Citrus Sinensis ID: 003878
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 789 | 2.2.26 [Sep-21-2011] | |||||||
| P48147 | 710 | Prolyl endopeptidase OS=H | yes | no | 0.893 | 0.992 | 0.504 | 0.0 | |
| O70196 | 710 | Prolyl endopeptidase OS=R | yes | no | 0.894 | 0.994 | 0.507 | 0.0 | |
| Q9QUR6 | 710 | Prolyl endopeptidase OS=M | yes | no | 0.894 | 0.994 | 0.505 | 0.0 | |
| Q9XTA2 | 710 | Prolyl endopeptidase OS=B | yes | no | 0.894 | 0.994 | 0.501 | 0.0 | |
| P23687 | 710 | Prolyl endopeptidase OS=S | yes | no | 0.893 | 0.992 | 0.504 | 0.0 | |
| Q86AS5 | 760 | Prolyl endopeptidase OS=D | yes | no | 0.915 | 0.95 | 0.355 | 1e-130 | |
| P27028 | 705 | Prolyl endopeptidase OS=F | N/A | no | 0.849 | 0.950 | 0.355 | 1e-125 | |
| Q06903 | 690 | Prolyl endopeptidase OS=A | no | no | 0.640 | 0.731 | 0.384 | 2e-98 | |
| P27195 | 705 | Prolyl endopeptidase OS=E | N/A | no | 0.636 | 0.712 | 0.370 | 7e-95 | |
| P55577 | 726 | Uncharacterized peptidase | yes | no | 0.387 | 0.421 | 0.339 | 6e-49 |
| >sp|P48147|PPCE_HUMAN Prolyl endopeptidase OS=Homo sapiens GN=PREP PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/781 (50%), Positives = 521/781 (66%), Gaps = 76/781 (9%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
SLQYP RDE+ V DYHG KI DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SLQYPDVYRDETAVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYF 189
GT AL + SED +Y AY LS SGSD WV
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSD--------------------WV----------- 151
Query: 190 FHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGF 249
TI + V K V+ + KFS +AWTHD KG
Sbjct: 152 ---TIKFMKVDGAK-----------------------ELPDVLERVKFSCMAWTHDGKGM 185
Query: 250 FYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE 309
FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++ +++
Sbjct: 186 FYNSYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD 242
Query: 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND 369
DG+Y+++ I E CDPVN+++YCDL G+ G +L +VKLID F+ +Y+ + N+
Sbjct: 243 DGRYVLLSIREGCDPVNRLWYCDLQQESSGIAG------ILKWVKLIDNFEGEYDYVTNE 296
Query: 370 DTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSYLSD 427
TVFTF TN+ +P Y++I +D ++P + W ++PE E+DVLE V N +++ YL D
Sbjct: 297 GTVFTFKTNRQSPNYRVINIDFRDPEESKWKVLVPEHEKDVLEWIACVRSNFLVLCYLHD 356
Query: 428 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487
VK +LQ+ DL G+LL P+++GS+ S +++D+ +F FTSFL PGI+Y C+L E
Sbjct: 357 VKNILQLHDLTTGALLKTFPLDVGSIVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416
Query: 488 PEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG 547
E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYGYGG
Sbjct: 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYGYGG 475
Query: 548 FNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE 607
FNIS+TP++SVSR I +RH+G + +ANIRGGGEYGE WHKGG LA KQNCFDDF A+E
Sbjct: 476 FNISITPNYSVSRLIFVRHMGGILAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAE 535
Query: 608 YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAW 667
YLI GYT ++L I GGSNGGLLV AC NQRPDLFGC +A VGVMDML++HK+TIGHAW
Sbjct: 536 YLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAW 595
Query: 668 VSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLK 727
+D+GCS+ ++ F WL+KYSPLHNV+ P + QYPS LLLTADHDDRVVPLHSLK
Sbjct: 596 TTDYGCSDSKQHFEWLVKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLHSLK 651
Query: 728 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASW 787
+AT+QY++ S + Q+NP++ ++ KAGHG G PT K+I+E +D + F+A+ L W
Sbjct: 652 FIATLQYIVGRSRK---QSNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNVDW 708
Query: 788 V 788
+
Sbjct: 709 I 709
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Homo sapiens (taxid: 9606) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 2EC: 6 |
| >sp|O70196|PPCE_RAT Prolyl endopeptidase OS=Rattus norvegicus GN=Prep PE=1 SV=1 | Back alignment and function description |
|---|
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/782 (50%), Positives = 524/782 (67%), Gaps = 76/782 (9%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ V DYHG KI DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETSVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPNTLSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNTLSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYF 189
GT AL + SED +Y AY LS SGSD WV
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSD--------------------WV----------- 151
Query: 190 FHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGF 249
TI + V K V+ + KF+ +AWTHD KG
Sbjct: 152 ---TIKFMKVDGAK-----------------------ELPDVLERVKFTCMAWTHDGKGM 185
Query: 250 FYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE 309
FY+ YP ++GK GTET +NL+ + YH LGT QSED+LC + P+ PK++ +++
Sbjct: 186 FYNSYPQ-QDGKS--DGTETSTNLHQKLCYHVLGTDQSEDVLCAEFPDEPKWMGGAELSD 242
Query: 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND 369
DG+Y+++ I E CDPVN+++YCDL G+ +G+L +VKLID F+ +Y+ I N+
Sbjct: 243 DGRYVLLSIWEGCDPVNRLWYCDLQQGSNGI------NGILKWVKLIDNFEGEYDYITNE 296
Query: 370 DTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSYLSD 427
TVFTF TN+++P Y++I +D +P++ W ++PE E+DVLE V N +++ YL +
Sbjct: 297 GTVFTFKTNRNSPNYRLINIDFTDPDESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLRN 356
Query: 428 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487
VK +LQ+ DL G+LL P+++GSV S R++DS +F FTSFL PG++Y C+L E
Sbjct: 357 VKNILQLHDLTTGALLKTFPLDVGSVVGYSGRKKDSEIFYQFTSFLSPGVIYHCDLTREE 416
Query: 488 PEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG 547
E ++FRE + G D S++ QVF PSKDG TKIPMFIV KK IKLDGSHP LYGYGG
Sbjct: 417 LEPRVFREVTVKGIDASDYQTIQVFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYGYGG 475
Query: 548 FNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE 607
FNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF A+E
Sbjct: 476 FNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAE 535
Query: 608 YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAW 667
YLI GYT S++L I GGSNGGLLV AC NQRPDLFGC +A VGVMDML++HKFTIGHAW
Sbjct: 536 YLIKEGYTTSKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKFTIGHAW 595
Query: 668 VSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLK 727
+D+GCS+ ++ F WL+KYSPLHNV+ P + QYPS LLLTADHDDRVVPLHSLK
Sbjct: 596 TTDYGCSDSKQHFEWLLKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLHSLK 651
Query: 728 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASW 787
+AT+QY++ S + Q+NP++ ++ KAGHG G PT K+I+E +D + F+A+ L W
Sbjct: 652 FIATLQYIVGRSRK---QSNPLLIHVDTKAGHGPGKPTAKVIEEVSDMFAFIARCLNIEW 708
Query: 788 VE 789
++
Sbjct: 709 IQ 710
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has high activity on the succinyl- (suc-) peptide-4-methylcoumaryl-7-amide (MCA) substrates suc-Gly-Pro-Leu-Gly-Pro-MCA, suc-Gly-Pro-MCA and suc-Ala-Ala-Ala-MCA. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|Q9QUR6|PPCE_MOUSE Prolyl endopeptidase OS=Mus musculus GN=Prep PE=2 SV=1 | Back alignment and function description |
|---|
Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/782 (50%), Positives = 522/782 (66%), Gaps = 76/782 (9%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ V +YHG KI DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETSVQEYHGHKICDPYSWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPNTLSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNTLSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYF 189
GT AL + SED +Y AY LS SGSD WV
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSD--------------------WV----------- 151
Query: 190 FHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGF 249
TI + V K V+ + KF+ +AWTHD KG
Sbjct: 152 ---TIKFMKVDGAK-----------------------ELPDVLERVKFTCMAWTHDGKGM 185
Query: 250 FYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE 309
FY+ YP ++GK GTET +NL+ + YH LGT QSEDILC + P+ PK++ +++
Sbjct: 186 FYNSYPQ-QDGKS--DGTETSTNLHQKLCYHVLGTDQSEDILCAEFPDEPKWMGGAELSD 242
Query: 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND 369
DG+Y+++ I E CDPVN+++YCDL P G+ G +L +VKLID F+ +Y+ + N+
Sbjct: 243 DGRYVLLSIWEGCDPVNRLWYCDLQQEPNGITG------ILKWVKLIDNFEGEYDYVTNE 296
Query: 370 DTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSYLSD 427
TVFTF TN+++P Y++I +D +P++ W ++PE E+DVLE V N +++ YL D
Sbjct: 297 GTVFTFKTNRNSPNYRLINIDFTDPDESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356
Query: 428 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487
VK +LQ+ DL G+LL P+++GSV S R++DS +F FTSFL PG++Y C+L E
Sbjct: 357 VKNILQLHDLTTGALLKTFPLDVGSVVGYSGRKKDSEIFYQFTSFLSPGVIYHCDLTKEE 416
Query: 488 PEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG 547
E +FRE + G D +++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYGYGG
Sbjct: 417 LEPMVFREVTVKGIDAADYQTIQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYGYGG 475
Query: 548 FNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE 607
FNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF A+E
Sbjct: 476 FNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAE 535
Query: 608 YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAW 667
YLI GYT ++L I GGSNGGLLV AC NQRPDLFGC +A VGVMDML++HKFTIGHAW
Sbjct: 536 YLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDMLKFHKFTIGHAW 595
Query: 668 VSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLK 727
+D+GCS+ ++ F WL+KYSPLHNV+ P + QYPS LLLTADHDDRVVPLHSLK
Sbjct: 596 TTDYGCSDTKQHFEWLLKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLHSLK 651
Query: 728 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASW 787
+AT+QY++ S + Q+NP++ ++ KAGHG G PT K+I+E +D + F+A+ L W
Sbjct: 652 FIATLQYIVGRSRK---QSNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIEW 708
Query: 788 VE 789
++
Sbjct: 709 IQ 710
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|Q9XTA2|PPCE_BOVIN Prolyl endopeptidase OS=Bos taurus GN=PREP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/782 (50%), Positives = 517/782 (66%), Gaps = 76/782 (9%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ V DYHG KI DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAVQDYHGHKICDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPNTLSDD
Sbjct: 63 YKERMTELYDYPKYSCNFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVCLDPNTLSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYF 189
GT AL + SED +Y+AY LS SGSDW
Sbjct: 123 GTVALRGYAFSEDGEYVAYGLSASGSDW-------------------------------- 150
Query: 190 FHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGF 249
+TI + V K V+ + KFS +AWTHD KG
Sbjct: 151 --VTIKFMKVDGAK-----------------------ELADVLERVKFSCMAWTHDGKGM 185
Query: 250 FYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE 309
FY+ YP ++GK GTET +NL+ + YH LGT QSEDILC + P+ PK++ +++
Sbjct: 186 FYNAYPQ-QDGKS--DGTETSTNLHQKLCYHVLGTDQSEDILCAEFPDEPKWMGGAELSD 242
Query: 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND 369
DG+Y+++ I E CDPVN+++YCDL P G+ G +L +VKLID F+ +Y+ + N+
Sbjct: 243 DGRYVLLSIREGCDPVNRLWYCDLHQEPNGITG------ILKWVKLIDNFEGEYDYVTNE 296
Query: 370 DTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSYLSD 427
TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ YL D
Sbjct: 297 GTVFTFKTNRHSPNYRLINIDFTDPEESRWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356
Query: 428 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487
VK LQ+ D+ G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L E
Sbjct: 357 VKNTLQLHDMATGALLKTFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416
Query: 488 PEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG 547
E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYGYGG
Sbjct: 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYGYGG 475
Query: 548 FNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE 607
FNIS+TP++SV R I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF A+E
Sbjct: 476 FNISITPNYSVCRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAE 535
Query: 608 YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAW 667
YLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIGHAW
Sbjct: 536 YLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAW 595
Query: 668 VSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLK 727
+D+GCS+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADHDDRVVPLHS K
Sbjct: 596 TTDYGCSDNKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLHSPK 651
Query: 728 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASW 787
+AT+Q+++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L W
Sbjct: 652 FIATLQHLVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDW 708
Query: 788 VE 789
++
Sbjct: 709 IQ 710
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|P23687|PPCE_PIG Prolyl endopeptidase OS=Sus scrofa GN=PREP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/781 (50%), Positives = 516/781 (66%), Gaps = 76/781 (9%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYF 189
GT AL + SED +Y AY LS SGSD WV
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSD--------------------WV----------- 151
Query: 190 FHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGF 249
TI + V K V+ + KFS +AWTHD KG
Sbjct: 152 ---TIKFMKVDGAK-----------------------ELPDVLERVKFSCMAWTHDGKGM 185
Query: 250 FYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE 309
FY+ YP ++GK GTET +NL+ + YYH LGT QSEDILC + P+ PK++ +++
Sbjct: 186 FYNAYPQ-QDGKS--DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD 242
Query: 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND 369
DG+Y+++ I E CDPVN+++YCDL G+ G +L +VKLID F+ +Y+ + N+
Sbjct: 243 DGRYVLLSIREGCDPVNRLWYCDLQQESNGITG------ILKWVKLIDNFEGEYDYVTNE 296
Query: 370 DTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSYLSD 427
TVFTF TN+ +P Y++I +D +P + W ++PE E+DVLE V N +++ YL D
Sbjct: 297 GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356
Query: 428 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487
VK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L E
Sbjct: 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416
Query: 488 PEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG 547
E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYGYGG
Sbjct: 417 LEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYGYGG 475
Query: 548 FNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE 607
FNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF A+E
Sbjct: 476 FNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAE 535
Query: 608 YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAW 667
YLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIGHAW
Sbjct: 536 YLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAW 595
Query: 668 VSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLK 727
+D+GCS+ ++ F WLIKYSPLHNV+ P + QYPS LLLTADHDDRVVPLHSLK
Sbjct: 596 TTDYGCSDSKQHFEWLIKYSPLHNVKLPEADD----IQYPSMLLLTADHDDRVVPLHSLK 651
Query: 728 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASW 787
+AT+QY++ S + Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L W
Sbjct: 652 FIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDW 708
Query: 788 V 788
+
Sbjct: 709 I 709
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Sus scrofa (taxid: 9823) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|Q86AS5|PPCE_DICDI Prolyl endopeptidase OS=Dictyostelium discoideum GN=prep PE=1 SV=1 | Back alignment and function description |
|---|
Score = 468 bits (1203), Expect = e-130, Method: Compositional matrix adjust.
Identities = 287/807 (35%), Positives = 423/807 (52%), Gaps = 85/807 (10%)
Query: 11 LQYPVARRDESVVDDYHG-----VKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCD 65
YP RRD+SV D + VK+ DPYR LED + E K +V ++ ++T S L +
Sbjct: 3 FNYPETRRDDSVFDIFKSTEKGSVKVYDPYRHLEDQQSPETKKWVDEENKITRSFLDQDN 62
Query: 66 VRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQD------SLDAKAKV 119
+K+ +I K+ + R+D +RG+K F+ N Q+++Y+ D S D K+
Sbjct: 63 TSEKISNEIMKMLNFERFDWFRRRGSKLFFSRNPNTLNQNIIYLIDIDQISISKDGKSSA 122
Query: 120 --------LLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE 171
L+PNT S DGT +L +S+ ++ ++ S +GSDW I + + I+
Sbjct: 123 KGFENAIEFLNPNTYSKDGTWSLKSFVISKSGDHVCFSYSKAGSDWEEIAVKK----IIT 178
Query: 172 ADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSV 231
+ L ++ + N Y +
Sbjct: 179 TNELK------TNKDDEEEKEDLKKKNCLHY---------------------AVVDLPDS 211
Query: 232 VSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLG-TKQSEDI 290
++ KF+SI W + GF Y+RYP P++ D D GTETD+NL ++ YYH LG +S D
Sbjct: 212 INWCKFTSIKWDENETGFIYNRYPKPEKVSDDDKGTETDTNLNNKVYYHKLGDANESFDR 271
Query: 291 LCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 350
+ ++ PE+P++IF + D L + +C+ + +Y + E +
Sbjct: 272 VVFECPENPQWIFGTEFSHDHSSLFISAFRDCNVEHNLYV--IRNFQEAIAN----KSAF 325
Query: 351 PFVKLIDGFDAQYEVIANDDT-VFTFLTNKDAPKYKIIRVDLKE-----PN-----DWFE 399
LID FDA Y I N + FLTN AP ++I + L + PN ++ E
Sbjct: 326 KVEALIDNFDACYYYITNTKQGEYFFLTNLSAPFNRLISIQLNDDQPIVPNSKSKLEFKE 385
Query: 400 VIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISAR 459
+IPE + VLES + + + VSY V+ ++++ D NG L + + ++SA
Sbjct: 386 IIPEKDY-VLESVSRSSQEKFYVSYQKHVQDIIEVYDF-NGKYLKDIKLPGPGSASLSAT 443
Query: 460 REDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGS 519
+FI+F++ + P + Y + K + E+ +F+E I GF S++ QVF S
Sbjct: 444 EYHDHIFINFSNLVSPSVTYYMDSKND--ELLLFKEPHIEGFKSSDYECKQVFYESPKDK 501
Query: 520 TKIPMFIVSKKNIKL-DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRG 578
TKIPMFI KK + G+ P + GYGGFNIS T SFS+ + +F IANIRG
Sbjct: 502 TKIPMFIAYKKTTDITSGNAPTYMTGYGGFNISYTQSFSIRNIYFLNKFNGIFVIANIRG 561
Query: 579 GGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ 638
GGEYG+ WH+ G+ KQNCFDDFI A+EYLI YT KL + GGSNGGLL+GA NQ
Sbjct: 562 GGEYGKAWHEAGSKKNKQNCFDDFIGAAEYLIKENYTNQNKLAVRGGSNGGLLMGAISNQ 621
Query: 639 RPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQ 698
RPDLF C +A VGVMDMLR+H TIG WVSD+G S+ ++F LIKYSPL+NV
Sbjct: 622 RPDLFKCVVADVGVMDMLRFHLHTIGSNWVSDYGRSDNPDDFDVLIKYSPLNNV------ 675
Query: 699 NPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAG 758
P QYPS +L T DHDDRV+P HS K ++ +QY L ++ P++ R+++ +G
Sbjct: 676 -PKDSNQYPSIMLCTGDHDDRVIPAHSYKFISELQYQLGKKVD-----TPLLIRVDKDSG 729
Query: 759 HGVGLPTQKMIDEAADRYGFMAKMLGA 785
HG G K +E AD + F +K+L
Sbjct: 730 HGAGKGLSKQNNEIADIFNFFSKVLNV 756
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|P27028|PPCE_FLAME Prolyl endopeptidase OS=Flavobacterium meningosepticum GN=f1pep1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust.
Identities = 277/779 (35%), Positives = 408/779 (52%), Gaps = 109/779 (13%)
Query: 11 LQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKL 70
L+YP ++ S D Y G ++ DPYRWLED AE+ K +VQ++V+ T L RD+L
Sbjct: 26 LKYPETKK-VSHTDTYFGTQVSDPYRWLEDDRAEDTKAWVQQEVKFTQDYLAQIPFRDQL 84
Query: 71 REKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDG 130
++++ +++ + APFK+G ++ N GLQ QSVLY +D+ K +V LDPN S+ G
Sbjct: 85 KKQLMDIWNYEKISAPFKKGKYTYFSKNDGLQAQSVLYRKDAA-GKTEVFLDPNKFSEKG 143
Query: 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFF 190
T +L VS ++ +AY++S GSDW I ++ E +
Sbjct: 144 TTSLASVSFNKKGTLVAYSISEGGSDWNKIIILDAETKK--------------------- 182
Query: 191 HLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFF 250
L +LL+V KFS I+W D +GFF
Sbjct: 183 QLDETLLDV------------------------------------KFSGISWLGD-EGFF 205
Query: 251 YSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTED 310
YS Y PKEG + T+ H+ Y+H LGTKQS+D L + P+ +VT+D
Sbjct: 206 YSSYDKPKEGSVLSGMTDK-----HKVYFHKLGTKQSQDELIIGGDKFPRRYIGAYVTDD 260
Query: 311 GQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDD 370
+YLV+ N N++Y DL K D F+ +I GFD+ V D
Sbjct: 261 QRYLVVSAA-NATNGNELYIKDLK---------NKTD----FIPIITGFDSNVNVADTDG 306
Query: 371 TVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVSYLSDV 428
T+KDAP ++++ ++ P W +VI E + LE T +Y+ D
Sbjct: 307 DTLYLFTDKDAPNKRLVKTTIQNPKAETWKDVIAETS-EPLEINTGGGY--FFATYMKDA 363
Query: 429 KYVLQIRDL-KNGSLLHQLPIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486
+ Q++ KNG L+ + + G+ + + + ++ SFT+++ P +++ N+ T
Sbjct: 364 --IDQVKQYDKNGKLVRAIKLPGSGNASGFGGEKTEKDLYYSFTNYITPPTIFKYNVTTG 421
Query: 487 TPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYG 546
E ++++ + F+ + QVF S DG TKIPM I KK +K DG +P +LY YG
Sbjct: 422 NSE--VYQKPKVK-FNPENYVSEQVFYTSSDG-TKIPMMISYKKGLKKDGKNPTILYSYG 477
Query: 547 GFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISAS 606
GFNIS+ P+FSV I M + G ++ + NIRGGGEYG++WH G +K+N F+DFI+A
Sbjct: 478 GFNISLQPAFSVVNAIWMEN-GGIYAVPNIRGGGEYGKKWHDAGTKMQKKNVFNDFIAAG 536
Query: 607 EYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHA 666
EYL GYT + + G SNGGLLVGA + RPDL A VGV+DMLRY+KFT G
Sbjct: 537 EYLQKNGYTSKEYMALSGRSNGGLLVGATMTMRPDLAKVAFPGVGVLDMLRYNKFTAGAG 596
Query: 667 WVSDFGCSEEEEE-FYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHS 725
W D+G +E+ +E F +L YSP+HNV+ YPST+++T+DHDDRVVP HS
Sbjct: 597 WAYDYGTAEDSKEMFEYLKSYSPVHNVKA--------GTCYPSTMVITSDHDDRVVPAHS 648
Query: 726 LKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784
K + +Q NPI+ RIE AGHG G T++++ E AD F +G
Sbjct: 649 FKFGSELQAKQSCK-------NPILIRIETNAGHGAGRSTEQVVAENADLLSFALYEMG 700
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has an absolute requirement for an X-Pro bond in the trans configuration immediately preceding the Pro-Y scissible bond. Flavobacterium meningosepticum (taxid: 238) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|Q06903|PPCE_AERHY Prolyl endopeptidase OS=Aeromonas hydrophila PE=1 SV=2 | Back alignment and function description |
|---|
Score = 360 bits (925), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 213/554 (38%), Positives = 316/554 (57%), Gaps = 49/554 (8%)
Query: 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD 295
KFS I+W + +GFFYS Y P +G ++ A T+ H+ Y+H LGT Q ED L +
Sbjct: 173 KFSGISWLGN-EGFFYSSYDKP-DGSELSARTDQ-----HKLYFHRLGTAQEEDRLVFGA 225
Query: 296 PEHPKYIFSGH-VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK 354
++ + G VTED +YL++ ++ N++Y DL+ R+G P +
Sbjct: 226 IPAQRHRYVGATVTEDDRYLLISAADSTSG-NRLYVKDLT-----------REGA-PLLT 272
Query: 355 LIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRV--DLKEPNDWFEVIPEAERDVLESA 412
+ A ++ N + LTN+DAP +++ V D P W ++IPE ++ VL
Sbjct: 273 VQGDLAADVSLVDNKGSRLYLLTNRDAPNRRLVTVEADNPGPEQWRDLIPERQQ-VLTVH 331
Query: 413 TAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFTS 471
+ + Y+ D ++ D +G + ++ + +GSV+ + +++D ++ F +
Sbjct: 332 SGGGY--LFAEYMVDATARVEQFD-HDGKRVREVGLPGLGSVSGFNGKQDDPALYFGFEN 388
Query: 472 FLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKN 531
+ P +Y+ + + + ++R + P F ++ Q F SKDG T++P+ I +K
Sbjct: 389 YAQPPTLYK--FEPNSGAISLYRASAAP-FKPEDYVSEQRFYRSKDG-TRVPLIISYRKG 444
Query: 532 IKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 591
+KLDGS+P +LYGYGGF++S+TPSFSVS + LG V+ +AN+RGGGEYG+ WH G
Sbjct: 445 LKLDGSNPTILYGYGGFDVSLTPSFSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGT 503
Query: 592 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651
KQN FDDFI+A+EYL + GYT++ +L I GGSNGGLLVGA + QRPDL A VG
Sbjct: 504 RMNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVACQAVG 563
Query: 652 VMDMLRYHKFTIGHAWVSDFGCSEEEEEFY-WLIKYSPLHNVRRPWEQNPDKPFQYPSTL 710
V+DMLRYH FT G W D+G S + E + +L YSPLH+VR YPSTL
Sbjct: 564 VLDMLRYHTFTAGAGWAYDYGTSADSEAMFDYLKGYSPLHSVR--------AGVSYPSTL 615
Query: 711 LLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMID 770
+ TADHDDRVVP HS K AT+Q + +P + RIE AGHG G P K+I+
Sbjct: 616 VTTADHDDRVVPAHSFKFAATLQ-------ADDAGPHPQLIRIETNAGHGAGTPVAKLIE 668
Query: 771 EAADRYGFMAKMLG 784
++AD Y F +G
Sbjct: 669 QSADIYAFTLFEMG 682
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has an absolute requirement for an X-Pro bond in the trans configuration immediately preceding the Pro-Y scissible bond. Aeromonas hydrophila (taxid: 644) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|P27195|PPCF_ELIMR Prolyl endopeptidase OS=Elizabethkingia miricola PE=1 SV=1 | Back alignment and function description |
|---|
Score = 348 bits (894), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 206/556 (37%), Positives = 310/556 (55%), Gaps = 54/556 (9%)
Query: 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD 295
KFS I+W D +GFFYS Y PK+G + T+ H+ Y+H LGTKQS+D L
Sbjct: 192 KFSGISWLGD-EGFFYSSYDKPKDGSVLSGMTDK-----HKVYFHKLGTKQSQDELIIGG 245
Query: 296 PEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL 355
+ P+ SG+VTED +YLV+ N N++Y DL K D F+ +
Sbjct: 246 DKFPRRYLSGYVTEDQRYLVVSAA-NATNGNELYIKDLK---------NKTD----FIPI 291
Query: 356 IDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVL-ESATA 414
I GF++ ++ D T+K+AP ++++ ++ P PE +DV+ E++
Sbjct: 292 ITGFESNVGLVDTDGDTLFLHTDKNAPNMRMVKTTIQNPK------PETWKDVIAETSEP 345
Query: 415 VNLNQ----MIVSYLSDVKYVLQIRDLKNGSLLHQLPI-EIGSVNAISARREDSVVFISF 469
+ +N +Y+ D ++ D K G L+ ++ + G+ + + ++ SF
Sbjct: 346 MRVNSGGGYFFATYMKDALSQIKQYD-KTGKLVREIKLPGSGTAGGFGGEKTEKELYYSF 404
Query: 470 TSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSK 529
T+++ P +++ ++ + E ++++ + F+ + QVF S DG TKIPM I +K
Sbjct: 405 TNYITPPTIFKFSIDSGKSE--VYQKPKVK-FNPENYVSEQVFYTSADG-TKIPMMISNK 460
Query: 530 KNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKG 589
K +K DG +P +LY YGGFNIS+ P+FSV I M + G ++ + NIRGGGEYG++WH
Sbjct: 461 KGLKKDGKNPTILYSYGGFNISLQPAFSVVNAIWMEN-GGIYAVPNIRGGGEYGKKWHDA 519
Query: 590 GALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 649
G +K+N F+DFI+A EYL GYT + + G SNGGLLVGA + RPDL A
Sbjct: 520 GTKQQKKNVFNDFIAAGEYLQKNGYTSKDYMALSGRSNGGLLVGATMTMRPDLAKVAFPG 579
Query: 650 VGVMDMLRYHKFTIGHAWVSDFGCSEEEEE-FYWLIKYSPLHNVRRPWEQNPDKPFQYPS 708
VGV+DMLRY+KFT G W D+G +E+ +E F +L YSP+HNV+ YPS
Sbjct: 580 VGVLDMLRYNKFTAGAGWAYDYGTAEDSKEMFEYLKSYSPVHNVK--------AGTCYPS 631
Query: 709 TLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKM 768
T+++T+DHDDRVVP HS K A +Q NP++ RIE AGHG G T+++
Sbjct: 632 TMVITSDHDDRVVPAHSFKFGAELQAKQACK-------NPVLIRIETNAGHGAGRSTEQV 684
Query: 769 IDEAADRYGFMAKMLG 784
+ E AD F +G
Sbjct: 685 VMENADLLSFALYEMG 700
|
Cleaves peptide bonds on the C-terminal side of prolyl residues within peptides that are up to approximately 30 amino acids long. Has an absolute requirement for an X-Pro bond in the trans configuration immediately preceding the Pro-Y scissible bond. Elizabethkingia miricola (taxid: 172045) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 6 |
| >sp|P55577|Y4NA_RHISN Uncharacterized peptidase y4nA OS=Rhizobium sp. (strain NGR234) GN=NGR_a02410 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (498), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 110/324 (33%), Positives = 175/324 (54%), Gaps = 18/324 (5%)
Query: 411 SATAVNLNQMIVSYLSDVKYVLQIRDLKNG---SLLHQLPIEIGSVNAISARREDSVVFI 467
+ T N++++S LS+V ++ D G S LP E +++ S+ E +F+
Sbjct: 370 AGTTQTKNRLVLSILSNVTSEVRSFDFGKGGWSSFKLALP-ENSTLSLTSSDDESDQLFV 428
Query: 468 SFTSFLIPGIVYQCNLKTETPEMKIFRETIIPG-FDRSEFHVHQVFVPSKDGSTKIPMFI 526
FL P ++ + T ++ + T P FD Q + SKDG TK+P F+
Sbjct: 429 FSEGFLEPSTLFCADAATG----QVEKITSTPARFDAGGLQAQQFWATSKDG-TKVPYFL 483
Query: 527 VSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 586
V++K++KLDG++P +LY YGGF I + PS+S L G + +ANIRGGGE+G +W
Sbjct: 484 VARKDVKLDGTNPTILYAYGGFQIPMQPSYSAVLGKLWLEKGGAYALANIRGGGEFGPKW 543
Query: 587 HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCA 646
H G +Q +DDF + ++ LI+ T + L I GGSNGGLL+G + QRPDL+
Sbjct: 544 HDAGLKTNRQRVYDDFQAVAQDLIAKKVTSTPHLGIMGGSNGGLLMGVQMIQRPDLWNAV 603
Query: 647 LAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQY 706
+ V ++DM+ + + + G +W +++G ++ E +L SP HNV+ Y
Sbjct: 604 VIQVPLLDMVNFTRMSAGASWQAEYGSPDDPVEGAFLRSISPYHNVK--------AGVAY 655
Query: 707 PSTLLLTADHDDRVVPLHSLKLLA 730
P T+ DDRV P+H+ K+ A
Sbjct: 656 PEPFFETSTKDDRVGPVHARKMAA 679
|
Rhizobium sp. (strain NGR234) (taxid: 394) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 789 | ||||||
| 449455579 | 731 | PREDICTED: prolyl endopeptidase-like [Cu | 0.926 | 1.0 | 0.713 | 0.0 | |
| 224085976 | 731 | predicted protein [Populus trichocarpa] | 0.926 | 1.0 | 0.712 | 0.0 | |
| 225459800 | 731 | PREDICTED: prolyl endopeptidase [Vitis v | 0.926 | 1.0 | 0.711 | 0.0 | |
| 147790149 | 731 | hypothetical protein VITISV_001107 [Viti | 0.926 | 1.0 | 0.711 | 0.0 | |
| 356553325 | 732 | PREDICTED: prolyl endopeptidase-like [Gl | 0.926 | 0.998 | 0.697 | 0.0 | |
| 371927101 | 731 | prolyl oligopeptidase [Coffea arabica] | 0.926 | 1.0 | 0.686 | 0.0 | |
| 371927103 | 731 | prolyl oligopeptidase [Coffea arabica] g | 0.926 | 1.0 | 0.685 | 0.0 | |
| 79382269 | 795 | prolyl oligopeptidase-like protein [Arab | 0.916 | 0.909 | 0.687 | 0.0 | |
| 19347837 | 757 | putative prolyl endopeptidase [Arabidops | 0.916 | 0.955 | 0.687 | 0.0 | |
| 297845008 | 731 | hypothetical protein ARALYDRAFT_472267 [ | 0.926 | 1.0 | 0.671 | 0.0 |
| >gi|449455579|ref|XP_004145530.1| PREDICTED: prolyl endopeptidase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1183 bits (3061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/789 (71%), Positives = 650/789 (82%), Gaps = 58/789 (7%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSV 60
M SLS + + YP ARRD+SVVDDYHG +IVDPYRWLEDPDA+EVK+FV+KQV+LT+SV
Sbjct: 1 MGSLSALIDPFLYPTARRDDSVVDDYHGCQIVDPYRWLEDPDADEVKEFVEKQVKLTESV 60
Query: 61 LKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVL 120
L+ CD R+KLR KIT+ FD PRYD PFKRGNKYFYFHNTGLQ Q++LYVQDSLD + +VL
Sbjct: 61 LQKCDTREKLRAKITEQFDHPRYDPPFKRGNKYFYFHNTGLQAQNILYVQDSLDGEPEVL 120
Query: 121 LDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCF 180
LDPN LS+DGT +L +SVS+DAKYLAY LS SGSDW IK+MRI+D+ E D LSWV F
Sbjct: 121 LDPNALSEDGTVSLSNLSVSKDAKYLAYGLSSSGSDWVKIKVMRIDDKKAEPDTLSWVKF 180
Query: 181 CFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSI 240
+IS W+V
Sbjct: 181 S-----------SIS---------------------------------WTV--------- 187
Query: 241 AWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPK 300
D KGFFYSRYPAPKE +DAGTET++NLYHE YYHFLGT QS+D+LCW+D +HPK
Sbjct: 188 ----DGKGFFYSRYPAPKEVGTLDAGTETNANLYHELYYHFLGTDQSDDVLCWRDQDHPK 243
Query: 301 YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD 360
Y+FS VT+DG+Y++M IEE CDPVNK YYC++SALP GLEGFK ++ LLPF KLID FD
Sbjct: 244 YLFSASVTDDGKYVLMPIEEGCDPVNKFYYCNISALPNGLEGFKGKNDLLPFTKLIDDFD 303
Query: 361 AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQM 420
AQY IANDDT+FTF+TNK+APKYK++RVDL +P W E++PE+++DVLESA AVN +QM
Sbjct: 304 AQYYAIANDDTLFTFITNKNAPKYKLVRVDLNDPTVWTELLPESDKDVLESACAVNGDQM 363
Query: 421 IVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQ 480
IVSYLSDVKYVLQIRDLK+GSLLHQLPI+IG+VN ISARREDS++FI FTSFL PGI+YQ
Sbjct: 364 IVSYLSDVKYVLQIRDLKSGSLLHQLPIDIGTVNGISARREDSLIFIGFTSFLTPGIIYQ 423
Query: 481 CNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPC 540
CNL++ TP++KIFRET++PGF+RS F+V QVFV SKDG T IPMF+V++KNI DGSHPC
Sbjct: 424 CNLESGTPDLKIFRETVVPGFERSAFNVDQVFVRSKDG-TNIPMFVVARKNIVFDGSHPC 482
Query: 541 LLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFD 600
LLYGYGGFNIS+TPSFSVSRT+LMRHLGAVFC+ANIRGGGEYGEEWHK G+LAKKQNCFD
Sbjct: 483 LLYGYGGFNISLTPSFSVSRTVLMRHLGAVFCVANIRGGGEYGEEWHKAGSLAKKQNCFD 542
Query: 601 DFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK 660
DFIS++EYLISAGYTQ KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR+HK
Sbjct: 543 DFISSAEYLISAGYTQPSKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRFHK 602
Query: 661 FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRV 720
FTIGHAW SD+GCS+ EEEF WLIKYSPLHNV+RPWEQ+PD+ QYPST+LLTADHDDRV
Sbjct: 603 FTIGHAWTSDYGCSDNEEEFKWLIKYSPLHNVKRPWEQHPDRLLQYPSTMLLTADHDDRV 662
Query: 721 VPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780
VPLHSLKLLATMQYVLCTSLE SPQTNPIIGRIE KAGHG G PTQKMIDEA+DRY FMA
Sbjct: 663 VPLHSLKLLATMQYVLCTSLEKSPQTNPIIGRIECKAGHGAGRPTQKMIDEASDRYAFMA 722
Query: 781 KMLGASWVE 789
ML A+W++
Sbjct: 723 MMLAATWID 731
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224085976|ref|XP_002307762.1| predicted protein [Populus trichocarpa] gi|222857211|gb|EEE94758.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1173 bits (3034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/789 (71%), Positives = 647/789 (82%), Gaps = 58/789 (7%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSV 60
M SLS ++ LQYP+ARRD+ ++DDYHGVKI DPYRWLEDPD EEVK FVQ+QV+LT+SV
Sbjct: 1 MGSLSALERPLQYPIARRDDIIIDDYHGVKIADPYRWLEDPDDEEVKGFVQEQVKLTESV 60
Query: 61 LKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVL 120
L+ CD R+KLREKITKLFD PRY PFKRG+KYFYFHNTGLQ Q VL+VQDSL+ + KVL
Sbjct: 61 LQTCDAREKLREKITKLFDHPRYYTPFKRGDKYFYFHNTGLQAQDVLFVQDSLEGEPKVL 120
Query: 121 LDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCF 180
LDPN LS+DGT +L +S+SEDAKYLAY LS SGSD WV
Sbjct: 121 LDPNGLSEDGTVSLNTLSLSEDAKYLAYGLSTSGSD--------------------WV-- 158
Query: 181 CFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSI 240
TI ++ V ++V++ ++ KF+ I
Sbjct: 159 ------------TIKVMRVED-----------------NIVEA------DTLNWVKFTGI 183
Query: 241 AWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPK 300
+WTHDSKGFFYSRYPAPKEG+++DAGTET++NLYHE YYHF+GT QSEDI CW+D E+PK
Sbjct: 184 SWTHDSKGFFYSRYPAPKEGENLDAGTETNANLYHELYYHFVGTDQSEDIQCWRDSENPK 243
Query: 301 YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD 360
Y+F VT+DG+YL++ I ENCDPVNKVYYCD+SA +GLEGFK + LLPF+KLID FD
Sbjct: 244 YMFGAGVTDDGKYLLLYISENCDPVNKVYYCDMSAFHDGLEGFKGGNALLPFIKLIDDFD 303
Query: 361 AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQM 420
AQY+ IANDDTVFTFLTNKDAP+YK++RVDLKEP+ W +V+PE+E+DVLESA AVN ++M
Sbjct: 304 AQYQEIANDDTVFTFLTNKDAPRYKVVRVDLKEPSSWIDVVPESEKDVLESAFAVNGDKM 363
Query: 421 IVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQ 480
IV YLSDVKYV+QIRDLK GSLLHQLP +IGSV ISARR DS VFI F SFL PGI+YQ
Sbjct: 364 IVCYLSDVKYVIQIRDLKTGSLLHQLPTDIGSVTGISARRRDSTVFIGFASFLTPGIIYQ 423
Query: 481 CNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPC 540
CNL +E P+MKIFRE +PGF+RSEF V+QVFV SKDG TKIPMFIV+KKNI LDGSHPC
Sbjct: 424 CNLDSEVPDMKIFREISVPGFNRSEFQVNQVFVRSKDG-TKIPMFIVAKKNITLDGSHPC 482
Query: 541 LLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFD 600
LLY YGGFNIS+TPSFSVSR +L RHLG+VFCIANIRGGGEYGEEWHK G+LA+KQNCFD
Sbjct: 483 LLYAYGGFNISITPSFSVSRIVLTRHLGSVFCIANIRGGGEYGEEWHKEGSLARKQNCFD 542
Query: 601 DFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK 660
DFISA+EYL+SAGYTQ +KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR+HK
Sbjct: 543 DFISAAEYLVSAGYTQPKKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRFHK 602
Query: 661 FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRV 720
FTIGHAW SDFGCS++EEEF WL KYSPLHNVRRPWEQ+P++P QYPST+LLTADHDDRV
Sbjct: 603 FTIGHAWTSDFGCSDKEEEFGWLFKYSPLHNVRRPWEQHPEQPSQYPSTMLLTADHDDRV 662
Query: 721 VPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780
VPLHSLKLLATMQY+LCTSL+NSPQTNPIIGRI+ KAGHG G PTQK+IDEAADRY FMA
Sbjct: 663 VPLHSLKLLATMQYILCTSLKNSPQTNPIIGRIDCKAGHGAGRPTQKLIDEAADRYSFMA 722
Query: 781 KMLGASWVE 789
KML ASW E
Sbjct: 723 KMLEASWTE 731
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459800|ref|XP_002285910.1| PREDICTED: prolyl endopeptidase [Vitis vinifera] gi|302141691|emb|CBI18894.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1167 bits (3020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/789 (71%), Positives = 645/789 (81%), Gaps = 58/789 (7%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSV 60
M S+ ESL+YP+ARRDESVVDDYHGV I DPYRWLEDPDA+EVK+FV+KQV+LTDSV
Sbjct: 1 MGSVGASGESLKYPLARRDESVVDDYHGVLISDPYRWLEDPDAQEVKEFVEKQVKLTDSV 60
Query: 61 LKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVL 120
L+ CD R+KLRE ITKLFD PR+DAPF+RG+KYFYFHNTGLQ Q VLYVQDSLD KA+VL
Sbjct: 61 LQTCDTREKLRETITKLFDHPRFDAPFRRGDKYFYFHNTGLQAQKVLYVQDSLDGKAEVL 120
Query: 121 LDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCF 180
LDPN LS+DGT +L +VSEDAKYLAY LS SGSD WV
Sbjct: 121 LDPNGLSEDGTVSLNTCAVSEDAKYLAYGLSSSGSD--------------------WV-- 158
Query: 181 CFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSI 240
TI ++ V ++ +S KFS I
Sbjct: 159 ------------TIKVMRVEDKRVET-----------------------DTLSWVKFSGI 183
Query: 241 AWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPK 300
+WTHDSKGFFY RYPAPKE + +DAGTET+SNL E YYHFLGT QS+DILCWKDP++PK
Sbjct: 184 SWTHDSKGFFYCRYPAPKEDEKLDAGTETNSNLNQELYYHFLGTDQSQDILCWKDPDNPK 243
Query: 301 YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD 360
++F VT+DG+Y+++ I E+C+ VNKVY+CD+++LPEGLEGF++R LLPF+KLID FD
Sbjct: 244 HMFGADVTDDGKYVLLYISESCEEVNKVYHCDITSLPEGLEGFRERKDLLPFIKLIDNFD 303
Query: 361 AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQM 420
A+Y IANDDT+FTF+TNKDAPKYK+++VDLKEP+ W V+ EAE+DVLESA AVN NQ+
Sbjct: 304 ARYHAIANDDTLFTFMTNKDAPKYKLVQVDLKEPSIWNVVLEEAEKDVLESAYAVNGNQI 363
Query: 421 IVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQ 480
+V YLSDVKYVLQIRDLK GSLLH LPI+IGSV ISARR DS VFI FTSFL PGI+Y
Sbjct: 364 LVCYLSDVKYVLQIRDLKTGSLLHDLPIDIGSVFDISARRRDSTVFIGFTSFLTPGIIYH 423
Query: 481 CNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPC 540
CNL+ P+MKIFRE ++PGFDR+EF V QVFVPSKDG TKIPMFIV++KNI +DGSHPC
Sbjct: 424 CNLEAGVPDMKIFREIVVPGFDRTEFCVDQVFVPSKDG-TKIPMFIVARKNIPMDGSHPC 482
Query: 541 LLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFD 600
LLYGYGGFNIS+TPSFSVSR +L RHLGAVFCIANIRGGGEYG+EWHK G+LAKKQNCFD
Sbjct: 483 LLYGYGGFNISITPSFSVSRIVLSRHLGAVFCIANIRGGGEYGQEWHKSGSLAKKQNCFD 542
Query: 601 DFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK 660
DFISA+EYL+SAGYTQ RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR+HK
Sbjct: 543 DFISAAEYLVSAGYTQPRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRFHK 602
Query: 661 FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRV 720
FTIGHAW SD+GCSE+EEEF+WLIKYSPLHNVRRPWEQ+PD+P QYP+T++LTADHDDRV
Sbjct: 603 FTIGHAWTSDYGCSEKEEEFHWLIKYSPLHNVRRPWEQSPDQPSQYPATMILTADHDDRV 662
Query: 721 VPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780
VPLHSLKLLATMQY+LCTS+E SPQTNPIIGRIE KAGHG G PTQKMIDEAADRY F+A
Sbjct: 663 VPLHSLKLLATMQYILCTSVEKSPQTNPIIGRIECKAGHGAGRPTQKMIDEAADRYSFLA 722
Query: 781 KMLGASWVE 789
KML ASW+E
Sbjct: 723 KMLEASWIE 731
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147790149|emb|CAN70125.1| hypothetical protein VITISV_001107 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1167 bits (3018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/789 (71%), Positives = 644/789 (81%), Gaps = 58/789 (7%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSV 60
M S+ ESL+YP+ARRDESVVDDYHGV I DPYRWLEDPDA+EVK+FV+KQV+LTDSV
Sbjct: 1 MGSVGASGESLKYPLARRDESVVDDYHGVLISDPYRWLEDPDAQEVKEFVEKQVKLTDSV 60
Query: 61 LKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVL 120
L+ CD R+KLRE ITKLFD PR+DAPF+RG+KYFYFHNTGLQ Q VLYVQDSLD KA+VL
Sbjct: 61 LQTCDTREKLRETITKLFDHPRFDAPFRRGDKYFYFHNTGLQAQKVLYVQDSLDGKAEVL 120
Query: 121 LDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCF 180
LDPN LS+DGT +L +VSEDAKYLAY LS SGSD WV
Sbjct: 121 LDPNGLSEDGTVSLNTCAVSEDAKYLAYGLSSSGSD--------------------WV-- 158
Query: 181 CFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSI 240
TI ++ V ++ +S KFS I
Sbjct: 159 ------------TIKVMRVEDKRVET-----------------------DTLSWVKFSGI 183
Query: 241 AWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPK 300
+WTHDSKGFFY RYPAPKE + +DAGTET+SNL E YYHFLGT QS+DILCWKDP++PK
Sbjct: 184 SWTHDSKGFFYCRYPAPKEDEKLDAGTETNSNLNQELYYHFLGTDQSQDILCWKDPDNPK 243
Query: 301 YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD 360
++F VT+DG+Y+++ I E+C+ VNKVY+CD+++LPEGLEGF++R LLPF+KLID FD
Sbjct: 244 HMFGADVTDDGKYVLLYISESCEEVNKVYHCDITSLPEGLEGFRERKDLLPFIKLIDNFD 303
Query: 361 AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQM 420
A+Y IANDDT+FTF+TNKDAPKYK+++VDLKEP+ W V+ EAE+DVLESA AVN NQ+
Sbjct: 304 ARYHAIANDDTLFTFMTNKDAPKYKLVQVDLKEPSIWNVVLEEAEKDVLESAYAVNGNQI 363
Query: 421 IVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQ 480
+V YLSDVKYVLQIRDLK GSLLH LPI+IGSV ISARR DS VFI FTSFL PGI+Y
Sbjct: 364 LVCYLSDVKYVLQIRDLKTGSLLHDLPIDIGSVFDISARRRDSTVFIGFTSFLTPGIIYH 423
Query: 481 CNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPC 540
CNL+ P MKIFRE ++PGFDR+EF V QVFVPSKDG TKIPMFIV++KNI +DGSHPC
Sbjct: 424 CNLEAGVPXMKIFREIVVPGFDRTEFCVDQVFVPSKDG-TKIPMFIVARKNIPMDGSHPC 482
Query: 541 LLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFD 600
LLYGYGGFNIS+TPSFSVSR +L RHLGAVFCIANIRGGGEYG+EWHK G+LAKKQNCFD
Sbjct: 483 LLYGYGGFNISITPSFSVSRIVLSRHLGAVFCIANIRGGGEYGQEWHKSGSLAKKQNCFD 542
Query: 601 DFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK 660
DFISA+EYL+SAGYTQ RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR+HK
Sbjct: 543 DFISAAEYLVSAGYTQPRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRFHK 602
Query: 661 FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRV 720
FTIGHAW SD+GCSE+EEEF+WLIKYSPLHNVRRPWEQ+PD+P QYP+T++LTADHDDRV
Sbjct: 603 FTIGHAWTSDYGCSEKEEEFHWLIKYSPLHNVRRPWEQSPDQPSQYPATMILTADHDDRV 662
Query: 721 VPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780
VPLHSLKLLATMQY+LCTS+E SPQTNPIIGRIE KAGHG G PTQKMIDEAADRY F+A
Sbjct: 663 VPLHSLKLLATMQYILCTSVEKSPQTNPIIGRIECKAGHGAGRPTQKMIDEAADRYSFLA 722
Query: 781 KMLGASWVE 789
KML ASW+E
Sbjct: 723 KMLEASWIE 731
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553325|ref|XP_003545007.1| PREDICTED: prolyl endopeptidase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1132 bits (2928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/790 (69%), Positives = 638/790 (80%), Gaps = 59/790 (7%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSV 60
M SLS + + +QYP ARRD+SV+DD+HGVKI DPYRWLE+P+AEEVK+FVQKQV LTDSV
Sbjct: 1 MGSLSALYQPIQYPTARRDDSVLDDFHGVKIADPYRWLENPEAEEVKEFVQKQVALTDSV 60
Query: 61 LKNCDVRDKLREKITKLFDSPRYDAPFKRG-NKYFYFHNTGLQPQSVLYVQDSLDAKAKV 119
L+ CD R KL EKITKLFD+PRY+APF+RG NKYFYFHNTGLQ QSVLYVQD
Sbjct: 61 LQRCDCRPKLAEKITKLFDNPRYNAPFRRGDNKYFYFHNTGLQAQSVLYVQD-------- 112
Query: 120 LLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVC 179
TL + L ++SED LS V DA ++
Sbjct: 113 -----TLEAEAEVLLDPNALSEDGTVSLNTLS------------------VSKDA-EFLA 148
Query: 180 FCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSS 239
+ S S + +TI+L+ + T+ +S KFSS
Sbjct: 149 YGLSSSGSDW--VTINLMRI---------------------RDKTVQP--DTLSWVKFSS 183
Query: 240 IAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHP 299
I+WTHD+KGFFYSRYPAPK+G+ +DAGTET++NLYHE YYHFLGT QS+DILCW+DPE+P
Sbjct: 184 ISWTHDTKGFFYSRYPAPKDGELVDAGTETNANLYHELYYHFLGTDQSQDILCWRDPENP 243
Query: 300 KYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF 359
KY+F G VTEDG+Y+++ IEE CDPVNK+YYCDLS LP GLEGF+ LLPFVKL+D F
Sbjct: 244 KYMFGGTVTEDGKYVLLYIEEGCDPVNKLYYCDLSELPNGLEGFRNESSLLPFVKLVDKF 303
Query: 360 DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ 419
D QY+ IANDDT+FTFLTNKDAPKYK++RVDLKEPN W +VIPE+E+DVLESA AVN NQ
Sbjct: 304 DGQYQAIANDDTLFTFLTNKDAPKYKLVRVDLKEPNAWTDVIPESEKDVLESARAVNGNQ 363
Query: 420 MIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVY 479
+IVSYLSDVKYVLQ+RDL+ GSL H+LPI+IG+V+ ISARRED+V+FI FTSFL PGI+Y
Sbjct: 364 LIVSYLSDVKYVLQVRDLETGSLQHKLPIDIGTVSEISARREDTVLFIGFTSFLTPGIIY 423
Query: 480 QCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHP 539
QC+L T+TP+MKIFRE IPGFDRSEFHV+QVFVPSKDG TKIPMFIV++K+I LDGSHP
Sbjct: 424 QCDLGTQTPDMKIFREIDIPGFDRSEFHVNQVFVPSKDG-TKIPMFIVARKDIVLDGSHP 482
Query: 540 CLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCF 599
CLLYGYGGFN+S+TP F++SRT+L RHLGAVFCIANIRGGGEYGEEWHK G+LA KQNCF
Sbjct: 483 CLLYGYGGFNVSLTPYFNISRTVLARHLGAVFCIANIRGGGEYGEEWHKSGSLANKQNCF 542
Query: 600 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH 659
DDFISA+EYL+SAGYTQ RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR+H
Sbjct: 543 DDFISAAEYLVSAGYTQPRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRFH 602
Query: 660 KFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDR 719
KFTIGHAW +D+GCSE+EEEF+WLIKYSPLHNVRRPWEQ+PD+ QYPST+LLTADHDDR
Sbjct: 603 KFTIGHAWATDYGCSEKEEEFHWLIKYSPLHNVRRPWEQHPDQSIQYPSTMLLTADHDDR 662
Query: 720 VVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFM 779
VVPLHSLKLLAT+QYVL TSL+ SPQTNPIIGRIE KAGHG G PTQKMIDEAADRY FM
Sbjct: 663 VVPLHSLKLLATLQYVLVTSLDKSPQTNPIIGRIECKAGHGAGRPTQKMIDEAADRYSFM 722
Query: 780 AKMLGASWVE 789
AKML A W+E
Sbjct: 723 AKMLDAHWIE 732
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|371927101|gb|AEX58648.1| prolyl oligopeptidase [Coffea arabica] | Back alignment and taxonomy information |
|---|
Score = 1127 bits (2916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/789 (68%), Positives = 627/789 (79%), Gaps = 58/789 (7%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSV 60
M SLS +DE LQYP ARRD+SVVD+YHGV + DPYRWLEDPD+EE K+FV+KQV+LTDSV
Sbjct: 1 MGSLSVLDEQLQYPAARRDDSVVDNYHGVPVSDPYRWLEDPDSEETKEFVEKQVKLTDSV 60
Query: 61 LKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVL 120
LK C+ R+KLREKIT LFD PRYDAPF+ NKYFYFHNTGLQPQSVLYVQD LD K +VL
Sbjct: 61 LKTCETREKLREKITALFDFPRYDAPFRAANKYFYFHNTGLQPQSVLYVQDGLDGKPEVL 120
Query: 121 LDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCF 180
LDPNTLSDDGT AL +VSEDA+YLAY + + WV
Sbjct: 121 LDPNTLSDDGTVALRAYAVSEDAEYLAYG--------------------ISSSGSDWV-- 158
Query: 181 CFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSI 240
TI +L + + VS KFS+I
Sbjct: 159 ------------TIQVLRIQDKHVLP-----------------------DTVSWVKFSNI 183
Query: 241 AWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPK 300
+WTHDSKGFFYSRYPAPKEG ++DAGTET++NL HE YYHFL T QSEDILCWKDP++PK
Sbjct: 184 SWTHDSKGFFYSRYPAPKEGDNLDAGTETNANLNHELYYHFLATDQSEDILCWKDPDNPK 243
Query: 301 YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD 360
+ S VTEDGQY+++ E CDPVNKVYYCDLSALP+GLE +K+ + LLPFVKL+D FD
Sbjct: 244 HTRSASVTEDGQYVLLYTFETCDPVNKVYYCDLSALPDGLEIYKETNNLLPFVKLVDSFD 303
Query: 361 AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQM 420
A Y +AND +VFTF TNKDAP+YK++RVDLK P W EV+ E+E+DVLES AVN +Q+
Sbjct: 304 ASYLDVANDGSVFTFRTNKDAPRYKLVRVDLKVPTSWTEVLQESEKDVLESVVAVNGDQI 363
Query: 421 IVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQ 480
+VSYLSDVK VLQIRDLK GSLLH LP++IG+V ISARR+D++VFI FTSFL+PGI+Y+
Sbjct: 364 VVSYLSDVKNVLQIRDLKTGSLLHHLPVDIGTVCQISARRKDNIVFIHFTSFLVPGIIYK 423
Query: 481 CNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPC 540
CNL PE+ IFRE I+PGFDRS+F V+QVFVPSKDG T IPMF+VSKK+I LDGS+PC
Sbjct: 424 CNLGGGAPEISIFREIIVPGFDRSQFVVNQVFVPSKDG-TLIPMFVVSKKDISLDGSNPC 482
Query: 541 LLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFD 600
LLY YGGF+IS+TPSFSVSR ++ RHL A+FCIANIRGGGEYGEEWHK G+LAKKQNCFD
Sbjct: 483 LLYAYGGFDISITPSFSVSRIVIARHLDAIFCIANIRGGGEYGEEWHKAGSLAKKQNCFD 542
Query: 601 DFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK 660
DF S ++YLIS GYTQ RKLCIEGGSNGGLLVGA INQRPDLFGCALAHVGVMDMLR+HK
Sbjct: 543 DFASCAKYLISTGYTQPRKLCIEGGSNGGLLVGASINQRPDLFGCALAHVGVMDMLRFHK 602
Query: 661 FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRV 720
FTIGHAW SD+GCSE+E+EF+WL KYSPLHNVRRPWEQ+PD+ QYP+T+LLTADHDDRV
Sbjct: 603 FTIGHAWTSDYGCSEKEKEFHWLFKYSPLHNVRRPWEQSPDQVSQYPATMLLTADHDDRV 662
Query: 721 VPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780
VPLHSLK LAT+QY LCT LE+SPQTNPII RIERKAGHG G PTQKMIDEAADRY FMA
Sbjct: 663 VPLHSLKFLATLQYELCTGLESSPQTNPIISRIERKAGHGAGRPTQKMIDEAADRYAFMA 722
Query: 781 KMLGASWVE 789
K+LGA+WV+
Sbjct: 723 KVLGATWVD 731
|
Source: Coffea arabica Species: Coffea arabica Genus: Coffea Family: Rubiaceae Order: Gentianales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|371927103|gb|AEX58649.1| prolyl oligopeptidase [Coffea arabica] gi|371927105|gb|AEX58650.1| prolyl oligopeptidase [Coffea arabica] | Back alignment and taxonomy information |
|---|
Score = 1126 bits (2913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/789 (68%), Positives = 627/789 (79%), Gaps = 58/789 (7%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSV 60
M SLS +DE LQYP ARRD+SVVD+YHGV + DPYRWLEDPD+EE K+FV+KQV+LTDSV
Sbjct: 1 MGSLSVLDEQLQYPAARRDDSVVDNYHGVPVSDPYRWLEDPDSEETKEFVEKQVKLTDSV 60
Query: 61 LKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVL 120
LK C+ R+KLREKIT LFD PRYDAPF+ NKYFYFHNTGLQPQSVLYVQD LD K +VL
Sbjct: 61 LKTCETREKLREKITALFDFPRYDAPFRAANKYFYFHNTGLQPQSVLYVQDGLDGKPEVL 120
Query: 121 LDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCF 180
LDPNTLS+DGT AL +VSEDA+YLAY + + WV
Sbjct: 121 LDPNTLSEDGTVALRAYAVSEDAEYLAYG--------------------ISSSGSDWV-- 158
Query: 181 CFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSI 240
TI +L + + VS KFS+I
Sbjct: 159 ------------TIQVLRIQDKHVLP-----------------------DTVSWVKFSNI 183
Query: 241 AWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPK 300
+WTHDSKGFFYSRYPAPKEG ++DAGTET++NL HE YYHFL T QSEDILCWKDP++PK
Sbjct: 184 SWTHDSKGFFYSRYPAPKEGDNLDAGTETNANLNHELYYHFLSTDQSEDILCWKDPDNPK 243
Query: 301 YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD 360
+ S VTEDGQY+++ E CDPVNKVYYCDLSALP+GLE +K+ + LLPFVKL+D FD
Sbjct: 244 HTRSASVTEDGQYVLLYTFETCDPVNKVYYCDLSALPDGLENYKETNNLLPFVKLVDSFD 303
Query: 361 AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQM 420
A Y +AND +VFTF TNKDAP+YK++RVDLK P W EV+ E+E+DVLES AVN +Q+
Sbjct: 304 ASYLDVANDGSVFTFRTNKDAPRYKLVRVDLKVPTSWTEVLQESEKDVLESVVAVNGDQI 363
Query: 421 IVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQ 480
+VSYLSDVK VLQIRDLK GSLLH LP++IG+V ISARR+D++VFI FTSFL+PGI+Y+
Sbjct: 364 VVSYLSDVKNVLQIRDLKTGSLLHHLPVDIGTVCQISARRKDNIVFIHFTSFLVPGIIYK 423
Query: 481 CNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPC 540
CNL PE+ IFRE I+PGFDRS+F V+QVFVPSKDG T IPMF+VSKK+I LDGS+PC
Sbjct: 424 CNLGGGAPEISIFREIIVPGFDRSQFVVNQVFVPSKDG-TLIPMFVVSKKDISLDGSNPC 482
Query: 541 LLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFD 600
LLY YGGF+IS+TPSFSVSR ++ RHL A+FCIANIRGGGEYGEEWHK G+LAKKQNCFD
Sbjct: 483 LLYAYGGFDISITPSFSVSRIVIARHLDAIFCIANIRGGGEYGEEWHKAGSLAKKQNCFD 542
Query: 601 DFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK 660
DF S ++YLIS GYTQ RKLCIEGGSNGGLLVGA INQRPDLFGCALAHVGVMDMLR+HK
Sbjct: 543 DFASCAKYLISTGYTQPRKLCIEGGSNGGLLVGASINQRPDLFGCALAHVGVMDMLRFHK 602
Query: 661 FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRV 720
FTIGHAW SD+GCSE+E+EF+WL KYSPLHNVRRPWEQ+PD+ QYP+T+LLTADHDDRV
Sbjct: 603 FTIGHAWTSDYGCSEKEKEFHWLFKYSPLHNVRRPWEQSPDQVSQYPATMLLTADHDDRV 662
Query: 721 VPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780
VPLHSLK LAT+QY LCT LE+SPQTNPII RIERKAGHG G PTQKMIDEAADRY FMA
Sbjct: 663 VPLHSLKFLATLQYELCTGLESSPQTNPIISRIERKAGHGAGRPTQKMIDEAADRYAFMA 722
Query: 781 KMLGASWVE 789
K+LGA+WV+
Sbjct: 723 KVLGATWVD 731
|
Source: Coffea arabica Species: Coffea arabica Genus: Coffea Family: Rubiaceae Order: Gentianales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|79382269|ref|NP_177741.3| prolyl oligopeptidase-like protein [Arabidopsis thaliana] gi|332197680|gb|AEE35801.1| prolyl oligopeptidase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1125 bits (2911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/781 (68%), Positives = 624/781 (79%), Gaps = 58/781 (7%)
Query: 9 ESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRD 68
E LQYP RRD+SVVDDYHGVKI DPYRWLEDPDAEEVK+FVQ QV+LTDSVL+ C+ ++
Sbjct: 73 EQLQYPATRRDDSVVDDYHGVKIGDPYRWLEDPDAEEVKEFVQSQVKLTDSVLEKCETKE 132
Query: 69 KLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSD 128
KLR+ ITKL D PRYD+PF++G+KYFYFHNTGLQ QSVLY+QD+LDA+ +VLLDPNTLSD
Sbjct: 133 KLRQNITKLIDHPRYDSPFRQGDKYFYFHNTGLQAQSVLYMQDNLDAEPEVLLDPNTLSD 192
Query: 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGY 188
DGT AL SVSEDAKYLAY LS SGSDW
Sbjct: 193 DGTVALNTFSVSEDAKYLAYGLSSSGSDW------------------------------- 221
Query: 189 FFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKG 248
+TI L+ + K+ +S KF+ I WTHDSKG
Sbjct: 222 ---VTIKLMKIEDKKVEP-----------------------DTLSWVKFTGITWTHDSKG 255
Query: 249 FFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVT 308
FFY RYPAPKEG+D+DAGTET+SNLYHE YYHF+GT QS+DILCW+D E+PKY+F VT
Sbjct: 256 FFYGRYPAPKEGEDIDAGTETNSNLYHELYYHFIGTDQSQDILCWRDNENPKYMFGAEVT 315
Query: 309 EDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAN 368
+DG+YL+M I E+CDPVNK+YYCD+++L GLE F+ LPF+KL+D FDAQY VI+N
Sbjct: 316 DDGKYLIMSIGESCDPVNKLYYCDMTSLSGGLESFRGSSSFLPFIKLVDTFDAQYSVISN 375
Query: 369 DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV 428
D+T+FTFLTNKDAPKYK++RVDLKEPN W +V+ E E+DVL SA AVN N ++ Y+SDV
Sbjct: 376 DETLFTFLTNKDAPKYKLVRVDLKEPNSWTDVVEEHEKDVLASACAVNGNHLVACYMSDV 435
Query: 429 KYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETP 488
K++LQIRDLK+GSLLHQLP++IGSV+ +SARR+D+ F SFTSFL PG++Y+C+L E+P
Sbjct: 436 KHILQIRDLKSGSLLHQLPLDIGSVSDVSARRKDNTFFFSFTSFLTPGVIYKCDLANESP 495
Query: 489 EMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF 548
E+K+FRE +PGFDR F QVF PSKDG TKIPMFIV+KK+IKLDGSHPCLLY YGGF
Sbjct: 496 EVKVFREVTVPGFDREAFQAIQVFYPSKDG-TKIPMFIVAKKDIKLDGSHPCLLYAYGGF 554
Query: 549 NISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEY 608
NIS+TPSFS SR +L +HLG VFC ANIRGGGEYGEEWHK G+LAKKQNCFDDFIS +EY
Sbjct: 555 NISITPSFSASRIVLSKHLGVVFCFANIRGGGEYGEEWHKAGSLAKKQNCFDDFISGAEY 614
Query: 609 LISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWV 668
L+SAGYTQ KLCIEGGSNGGLLVGACINQRPDL+GCALAHVGVMDMLR+HKFTIGHAW
Sbjct: 615 LVSAGYTQPSKLCIEGGSNGGLLVGACINQRPDLYGCALAHVGVMDMLRFHKFTIGHAWT 674
Query: 669 SDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKL 728
SD+GCSE EEEF+WLIKYSPLHNV+RPWEQ D QYPST+LLTADHDDRVVPLHSLKL
Sbjct: 675 SDYGCSENEEEFHWLIKYSPLHNVKRPWEQQTDHLVQYPSTMLLTADHDDRVVPLHSLKL 734
Query: 729 LATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASWV 788
LAT+Q+VLCTSL+NSPQ NPIIGRIE KAGHG G PTQKMIDEAADRY FMAKM+ ASW
Sbjct: 735 LATLQHVLCTSLDNSPQMNPIIGRIEVKAGHGAGRPTQKMIDEAADRYSFMAKMVNASWT 794
Query: 789 E 789
E
Sbjct: 795 E 795
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|19347837|gb|AAL86330.1| putative prolyl endopeptidase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1125 bits (2910), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/781 (68%), Positives = 624/781 (79%), Gaps = 58/781 (7%)
Query: 9 ESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRD 68
E LQYP RRD+SVVDDYHGVKI DPYRWLEDPDAEEVK+FVQ QV+LTDSVL+ C+ ++
Sbjct: 35 EQLQYPATRRDDSVVDDYHGVKIGDPYRWLEDPDAEEVKEFVQSQVKLTDSVLEKCETKE 94
Query: 69 KLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSD 128
KLR+ ITKL D PRYD+PF++G+KYFYFHNTGLQ QSVLY+QD+LDA+ +VLLDPNTLSD
Sbjct: 95 KLRQNITKLIDHPRYDSPFRQGDKYFYFHNTGLQAQSVLYMQDNLDAEPEVLLDPNTLSD 154
Query: 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGY 188
DGT AL SVSEDAKYLAY LS SGSDW
Sbjct: 155 DGTVALNTFSVSEDAKYLAYGLSSSGSDW------------------------------- 183
Query: 189 FFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKG 248
+TI L+ + K+ +S KF+ I WTHDSKG
Sbjct: 184 ---VTIKLMKIEDKKVEP-----------------------DTLSWVKFTGITWTHDSKG 217
Query: 249 FFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVT 308
FFY RYPAPKEG+D+DAGTET+SNLYHE YYHF+GT QS+DILCW+D E+PKY+F VT
Sbjct: 218 FFYGRYPAPKEGEDIDAGTETNSNLYHELYYHFIGTDQSQDILCWRDNENPKYMFGAEVT 277
Query: 309 EDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAN 368
+DG+YL+M I E+CDPVNK+YYCD+++L GLE F+ LPF+KL+D FDAQY VI+N
Sbjct: 278 DDGKYLIMSIGESCDPVNKLYYCDMTSLSGGLESFRGSSSFLPFIKLVDTFDAQYSVISN 337
Query: 369 DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV 428
D+T+FTFLTNKDAPKYK++RVDLKEPN W +V+ E E+DVL SA AVN N ++ Y+SDV
Sbjct: 338 DETLFTFLTNKDAPKYKLVRVDLKEPNSWTDVVEEHEKDVLASACAVNGNHLVACYMSDV 397
Query: 429 KYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETP 488
K++LQIRDLK+GSLLHQLP++IGSV+ +SARR+D+ F SFTSFL PG++Y+C+L E+P
Sbjct: 398 KHILQIRDLKSGSLLHQLPLDIGSVSDVSARRKDNTFFFSFTSFLTPGVIYKCDLANESP 457
Query: 489 EMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF 548
E+K+FRE +PGFDR F QVF PSKDG TKIPMFIV+KK+IKLDGSHPCLLY YGGF
Sbjct: 458 EVKVFREVTVPGFDREAFQAIQVFYPSKDG-TKIPMFIVAKKDIKLDGSHPCLLYAYGGF 516
Query: 549 NISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEY 608
NIS+TPSFS SR +L +HLG VFC ANIRGGGEYGEEWHK G+LAKKQNCFDDFIS +EY
Sbjct: 517 NISITPSFSASRIVLSKHLGVVFCFANIRGGGEYGEEWHKAGSLAKKQNCFDDFISGAEY 576
Query: 609 LISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWV 668
L+SAGYTQ KLCIEGGSNGGLLVGACINQRPDL+GCALAHVGVMDMLR+HKFTIGHAW
Sbjct: 577 LVSAGYTQPSKLCIEGGSNGGLLVGACINQRPDLYGCALAHVGVMDMLRFHKFTIGHAWT 636
Query: 669 SDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKL 728
SD+GCSE EEEF+WLIKYSPLHNV+RPWEQ D QYPST+LLTADHDDRVVPLHSLKL
Sbjct: 637 SDYGCSENEEEFHWLIKYSPLHNVKRPWEQQTDHLVQYPSTMLLTADHDDRVVPLHSLKL 696
Query: 729 LATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASWV 788
LAT+Q+VLCTSL+NSPQ NPIIGRIE KAGHG G PTQKMIDEAADRY FMAKM+ ASW
Sbjct: 697 LATLQHVLCTSLDNSPQMNPIIGRIEVKAGHGAGRPTQKMIDEAADRYSFMAKMVNASWT 756
Query: 789 E 789
E
Sbjct: 757 E 757
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297845008|ref|XP_002890385.1| hypothetical protein ARALYDRAFT_472267 [Arabidopsis lyrata subsp. lyrata] gi|297336227|gb|EFH66644.1| hypothetical protein ARALYDRAFT_472267 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1118 bits (2893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/789 (67%), Positives = 630/789 (79%), Gaps = 58/789 (7%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSV 60
M SLS +E LQYP A+RDESVV+DYHGV + DPYRWLEDPDAEEVK+FV+KQV+L++SV
Sbjct: 1 MGSLSAFEERLQYPTAKRDESVVEDYHGVNVSDPYRWLEDPDAEEVKEFVEKQVKLSESV 60
Query: 61 LKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVL 120
LK C+ ++KL +K T+ D PRYD PFKRGN YFYFHN+GLQ QSVL+VQD L+++A+VL
Sbjct: 61 LKTCETKEKLHDKFTEFIDYPRYDTPFKRGNSYFYFHNSGLQAQSVLHVQDDLESEAEVL 120
Query: 121 LDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCF 180
LDPNTLSDDGT +L +S+SEDAKYLAY LS SGSD WV
Sbjct: 121 LDPNTLSDDGTVSLNTLSISEDAKYLAYGLSSSGSD--------------------WV-- 158
Query: 181 CFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSI 240
TI ++ + K V+S +S KFS I
Sbjct: 159 ------------TIKVMKIEDKK-----------------VES------DSLSWVKFSGI 183
Query: 241 AWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPK 300
WTHD KGFFYSRYPAP+EG+ +DAGTET+SNLYHE YYHFLG QSED+LCW+D ++PK
Sbjct: 184 TWTHDGKGFFYSRYPAPQEGEKIDAGTETNSNLYHELYYHFLGMDQSEDVLCWRDQDNPK 243
Query: 301 YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD 360
++F VT+DG+YL+M IEE CDPVNKVY+CDLS+LP+GLEGF+ + LLPFVKLID FD
Sbjct: 244 HMFGSKVTDDGKYLIMSIEEGCDPVNKVYHCDLSSLPKGLEGFRGSNALLPFVKLIDTFD 303
Query: 361 AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQM 420
AQY IAND T+FTFLTNKDAPKYK++RVDLKEP+ W +VI E E+DVL +A+AVN +Q+
Sbjct: 304 AQYIAIANDATLFTFLTNKDAPKYKLVRVDLKEPSSWTDVIAEHEKDVLSTASAVNGDQL 363
Query: 421 IVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQ 480
+VSY+SDVK++LQIRDLK+GSLLH+LP++IGSV + ARR+D++ F FTSFL PG++Y+
Sbjct: 364 VVSYMSDVKHILQIRDLKSGSLLHRLPVDIGSVCGVFARRKDTIFFFRFTSFLTPGVIYK 423
Query: 481 CNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPC 540
C+L E PE+ +FRE +PGFDR+ F V QVF PSKDG T+IPMFIV++K+IKLDGSHPC
Sbjct: 424 CDLSHEAPEVTVFREIGVPGFDRTAFQVTQVFYPSKDG-TEIPMFIVARKDIKLDGSHPC 482
Query: 541 LLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFD 600
LLY YGGF++S+TP FS +R +L RHLG VFC ANIRGGGEYGEEWHK GALA KQNCFD
Sbjct: 483 LLYAYGGFSVSMTPFFSATRIVLSRHLGTVFCFANIRGGGEYGEEWHKSGALANKQNCFD 542
Query: 601 DFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK 660
DFIS +EYL+SAGYTQ RKLCIEGGSNGG+LVGACINQRPDLFGCALAHVGVMDMLR+HK
Sbjct: 543 DFISGAEYLVSAGYTQPRKLCIEGGSNGGILVGACINQRPDLFGCALAHVGVMDMLRFHK 602
Query: 661 FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRV 720
FTIGHAW S+FGCS++EEEF+WLIKYSPLHNV+RPWEQ D+ QYPST+LLTADHDDRV
Sbjct: 603 FTIGHAWTSEFGCSDKEEEFHWLIKYSPLHNVKRPWEQKTDRFVQYPSTMLLTADHDDRV 662
Query: 721 VPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780
VPLH+ KLLATMQY L SLENSPQTNPII RIE KAGHG G PTQKMIDEAADRY FMA
Sbjct: 663 VPLHTYKLLATMQYELGLSLENSPQTNPIIARIEVKAGHGAGRPTQKMIDEAADRYSFMA 722
Query: 781 KMLGASWVE 789
KM+ ASW++
Sbjct: 723 KMVDASWID 731
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 789 | ||||||
| TAIR|locus:2199814 | 795 | AT1G76140 [Arabidopsis thalian | 0.705 | 0.700 | 0.749 | 1.50000009901e-317 | |
| TAIR|locus:2012888 | 731 | AT1G20380 [Arabidopsis thalian | 0.705 | 0.761 | 0.747 | 2.3e-311 | |
| UNIPROTKB|F1NUS2 | 710 | PREP "Uncharacterized protein" | 0.685 | 0.761 | 0.558 | 4.4e-226 | |
| UNIPROTKB|P48147 | 710 | PREP "Prolyl endopeptidase" [H | 0.685 | 0.761 | 0.542 | 1e-224 | |
| RGD|620841 | 710 | Prep "prolyl endopeptidase" [R | 0.686 | 0.763 | 0.549 | 2.1e-224 | |
| UNIPROTKB|O70196 | 710 | Prep "Prolyl endopeptidase" [R | 0.686 | 0.763 | 0.549 | 2.1e-224 | |
| MGI|MGI:1270863 | 710 | Prep "prolyl endopeptidase" [M | 0.686 | 0.763 | 0.545 | 7.2e-224 | |
| UNIPROTKB|P23687 | 710 | PREP "Prolyl endopeptidase" [S | 0.685 | 0.761 | 0.548 | 4e-223 | |
| ZFIN|ZDB-GENE-050522-14 | 709 | prep "prolyl endopeptidase" [D | 0.685 | 0.763 | 0.551 | 4e-223 | |
| UNIPROTKB|Q9XTA2 | 710 | PREP "Prolyl endopeptidase" [B | 0.686 | 0.763 | 0.540 | 1.7e-222 |
| TAIR|locus:2199814 AT1G76140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2354 (833.7 bits), Expect = 1.5e-317, Sum P(2) = 1.5e-317
Identities = 418/558 (74%), Positives = 485/558 (86%)
Query: 232 VSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291
+S KF+ I WTHDSKGFFY RYPAPKEG+D+DAGTET+SNLYHE YYHF+GT QS+DIL
Sbjct: 239 LSWVKFTGITWTHDSKGFFYGRYPAPKEGEDIDAGTETNSNLYHELYYHFIGTDQSQDIL 298
Query: 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 351
CW+D E+PKY+F VT+DG+YL+M I E+CDPVNK+YYCD+++L GLE F+ LP
Sbjct: 299 CWRDNENPKYMFGAEVTDDGKYLIMSIGESCDPVNKLYYCDMTSLSGGLESFRGSSSFLP 358
Query: 352 FVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLES 411
F+KL+D FDAQY VI+ND+T+FTFLTNKDAPKYK++RVDLKEPN W +V+ E E+DVL S
Sbjct: 359 FIKLVDTFDAQYSVISNDETLFTFLTNKDAPKYKLVRVDLKEPNSWTDVVEEHEKDVLAS 418
Query: 412 ATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS 471
A AVN N ++ Y+SDVK++LQIRDLK+GSLLHQLP++IGSV+ +SARR+D+ F SFTS
Sbjct: 419 ACAVNGNHLVACYMSDVKHILQIRDLKSGSLLHQLPLDIGSVSDVSARRKDNTFFFSFTS 478
Query: 472 FLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKN 531
FL PG++Y+C+L E+PE+K+FRE +PGFDR F QVF PSKDG TKIPMFIV+KK+
Sbjct: 479 FLTPGVIYKCDLANESPEVKVFREVTVPGFDREAFQAIQVFYPSKDG-TKIPMFIVAKKD 537
Query: 532 IKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 591
IKLDGSHPCLLY YGGFNIS+TPSFS SR +L +HLG VFC ANIRGGGEYGEEWHK G+
Sbjct: 538 IKLDGSHPCLLYAYGGFNISITPSFSASRIVLSKHLGVVFCFANIRGGGEYGEEWHKAGS 597
Query: 592 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651
LAKKQNCFDDFIS +EYL+SAGYTQ KLCIEGGSNGGLLVGACINQRPDL+GCALAHVG
Sbjct: 598 LAKKQNCFDDFISGAEYLVSAGYTQPSKLCIEGGSNGGLLVGACINQRPDLYGCALAHVG 657
Query: 652 VMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLL 711
VMDMLR+HKFTIGHAW SD+GCSE EEEF+WLIKYSPLHNV+RPWEQ D QYPST+L
Sbjct: 658 VMDMLRFHKFTIGHAWTSDYGCSENEEEFHWLIKYSPLHNVKRPWEQQTDHLVQYPSTML 717
Query: 712 LTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDE 771
LTADHDDRVVPLHSLKLLAT+Q+VLCTSL+NSPQ NPIIGRIE KAGHG G PTQKMIDE
Sbjct: 718 LTADHDDRVVPLHSLKLLATLQHVLCTSLDNSPQMNPIIGRIEVKAGHGAGRPTQKMIDE 777
Query: 772 AADRYGFMAKMLGASWVE 789
AADRY FMAKM+ ASW E
Sbjct: 778 AADRYSFMAKMVNASWTE 795
|
|
| TAIR|locus:2012888 AT1G20380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2309 (817.9 bits), Expect = 2.3e-311, Sum P(2) = 2.3e-311
Identities = 417/558 (74%), Positives = 483/558 (86%)
Query: 232 VSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291
+S KFS I WTHD KGFFYSRYPAP+EG+ +DAGTET+SNLYHE YYHFLGT QSED+L
Sbjct: 175 LSWVKFSGITWTHDGKGFFYSRYPAPREGEKIDAGTETNSNLYHELYYHFLGTDQSEDVL 234
Query: 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 351
CW+D ++PK++F VT+DG+YL+M IEE CDPVNKVY+CDLS LP+GLEGF+ + LLP
Sbjct: 235 CWRDQDNPKHMFGSKVTDDGKYLIMSIEEGCDPVNKVYHCDLSLLPKGLEGFRGSNTLLP 294
Query: 352 FVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLES 411
FVKLID FDAQY IAND+T+FTFLTNKDAPKYK++RVDLKEP+ W +VI E E+DVL +
Sbjct: 295 FVKLIDTFDAQYIAIANDETLFTFLTNKDAPKYKVVRVDLKEPSSWTDVIAEHEKDVLST 354
Query: 412 ATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS 471
A+AVN +Q++VSY+SDVK++LQIRDLK+GSLLH LP++IGSV + ARR+D+ F FTS
Sbjct: 355 ASAVNGDQLVVSYMSDVKHILQIRDLKSGSLLHGLPVDIGSVCGVFARRKDTTFFFRFTS 414
Query: 472 FLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKN 531
FL PG++Y C+L E PE+ +FRE +PGFDR+ F V QVF PSKDG T IPMFIV++K+
Sbjct: 415 FLTPGVIYICDLSHEAPEVTVFREIGVPGFDRTAFQVTQVFYPSKDG-TDIPMFIVARKD 473
Query: 532 IKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 591
IKLDGSHPCLLY YGGF+IS+TP FS +R +L RHLG VFC ANIRGGGEYGEEWHK GA
Sbjct: 474 IKLDGSHPCLLYAYGGFSISMTPFFSATRIVLGRHLGTVFCFANIRGGGEYGEEWHKSGA 533
Query: 592 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651
LA KQNCFDDFIS +EYL+SAGYTQ RKLCIEGGSNGG+LVGACINQRPDLFGCALAHVG
Sbjct: 534 LANKQNCFDDFISGAEYLVSAGYTQPRKLCIEGGSNGGILVGACINQRPDLFGCALAHVG 593
Query: 652 VMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLL 711
VMDMLR+HKFTIGHAW S+FGCS++EEEF+WLIKYSPLHNV+RPWEQ D FQYPST+L
Sbjct: 594 VMDMLRFHKFTIGHAWTSEFGCSDKEEEFHWLIKYSPLHNVKRPWEQKTDLFFQYPSTML 653
Query: 712 LTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDE 771
LTADHDDRVVPLHS KLLATMQY L SLENSPQTNPII RIE KAGHG G PTQKMIDE
Sbjct: 654 LTADHDDRVVPLHSYKLLATMQYELGLSLENSPQTNPIIARIEVKAGHGAGRPTQKMIDE 713
Query: 772 AADRYGFMAKMLGASWVE 789
AADRY FMAKM+ ASW++
Sbjct: 714 AADRYSFMAKMVDASWID 731
|
|
| UNIPROTKB|F1NUS2 PREP "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1702 (604.2 bits), Expect = 4.4e-226, Sum P(2) = 4.4e-226
Identities = 313/560 (55%), Positives = 408/560 (72%)
Query: 232 VSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291
+ + KFS +AWTHD KG FY+ YP ++GK D GTET +NL+ + +YH LGT QSEDIL
Sbjct: 168 LERVKFSCMAWTHDGKGMFYNCYPK-QDGKS-D-GTETSTNLHQKLHYHVLGTNQSEDIL 224
Query: 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 351
C + P+ PK++ +++DG+Y+++ I E CDPVN+++YCDL +G+ G +L
Sbjct: 225 CAEFPDEPKWMGGAEISDDGRYVLLSIREGCDPVNRLWYCDLQKESQGISG------ILQ 278
Query: 352 FVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVL 409
+VKLID F+A+YE + N+ TVFTF TN+ +P Y++I +D +P + W +IPE ERDVL
Sbjct: 279 WVKLIDNFEAEYEYVTNEGTVFTFKTNRHSPNYRLINIDFSDPEESKWKVLIPEHERDVL 338
Query: 410 ESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISF 469
E V N +++ YL DVK +LQ+ DL G+ L P+++GS+ S +++D+ +F F
Sbjct: 339 EWVACVRSNFLVLCYLHDVKNILQLHDLATGAHLKTFPLDVGSIVGYSGQKKDNEIFYQF 398
Query: 470 TSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSK 529
TSFL PGI+Y C+L E E ++FRE + GFD S + QVF PSKDG TKIPMFI+ K
Sbjct: 399 TSFLSPGIIYHCDLTKEELEPRVFREVTVKGFDPSVYQTIQVFYPSKDG-TKIPMFIIHK 457
Query: 530 KNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKG 589
K IKLDGSHP LYGYGGFNIS+TPS+SVSR I +RHLG V +ANIRGGGEYGE WHKG
Sbjct: 458 KGIKLDGSHPAFLYGYGGFNISITPSYSVSRLIFVRHLGGVLAVANIRGGGEYGETWHKG 517
Query: 590 GALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 649
G LA KQNCFDDF A++YLI GYT +KL I GGSNGGLLV AC NQRPDLFGC +A
Sbjct: 518 GILANKQNCFDDFQYAAKYLIREGYTSPKKLTINGGSNGGLLVAACANQRPDLFGCVIAQ 577
Query: 650 VGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPST 709
VGVMDML++HK+TIGHAW +D+GCS+ +E+F WL KYSPLHNV+ P E QYP+T
Sbjct: 578 VGVMDMLKFHKYTIGHAWTTDYGCSDHKEQFEWLCKYSPLHNVKLPEEDG----IQYPAT 633
Query: 710 LLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMI 769
LLLTADHDDRVVPLHSLK +AT+QYV+ S + QTNP++ ++ KAGHG G PT K+I
Sbjct: 634 LLLTADHDDRVVPLHSLKFIATLQYVVGRSRK---QTNPLLIHVDTKAGHGAGKPTAKVI 690
Query: 770 DEAADRYGFMAKMLGASWVE 789
+E +D + F+A+ L W+E
Sbjct: 691 EEVSDMFAFIARCLNLDWIE 710
|
|
| UNIPROTKB|P48147 PREP "Prolyl endopeptidase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1685 (598.2 bits), Expect = 1.0e-224, Sum P(2) = 1.0e-224
Identities = 304/560 (54%), Positives = 408/560 (72%)
Query: 231 VVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDI 290
V+ + KFS +AWTHD KG FY+ YP ++GK D GTET +NL+ + YYH LGT QSEDI
Sbjct: 167 VLERVKFSCMAWTHDGKGMFYNSYPQ-QDGKS-D-GTETSTNLHQKLYYHVLGTDQSEDI 223
Query: 291 LCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 350
LC + P+ PK++ +++DG+Y+++ I E CDPVN+++YCDL G+ G +L
Sbjct: 224 LCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESSGIAG------IL 277
Query: 351 PFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDV 408
+VKLID F+ +Y+ + N+ TVFTF TN+ +P Y++I +D ++P + W ++PE E+DV
Sbjct: 278 KWVKLIDNFEGEYDYVTNEGTVFTFKTNRQSPNYRVINIDFRDPEESKWKVLVPEHEKDV 337
Query: 409 LESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFIS 468
LE V N +++ YL DVK +LQ+ DL G+LL P+++GS+ S +++D+ +F
Sbjct: 338 LEWIACVRSNFLVLCYLHDVKNILQLHDLTTGALLKTFPLDVGSIVGYSGQKKDTEIFYQ 397
Query: 469 FTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVS 528
FTSFL PGI+Y C+L E E ++FRE + G D S++ Q+F PSKDG TKIPMFIV
Sbjct: 398 FTSFLSPGIIYHCDLTKEELEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVH 456
Query: 529 KKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 588
KK IKLDGSHP LYGYGGFNIS+TP++SVSR I +RH+G + +ANIRGGGEYGE WHK
Sbjct: 457 KKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGILAVANIRGGGEYGETWHK 516
Query: 589 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA 648
GG LA KQNCFDDF A+EYLI GYT ++L I GGSNGGLLV AC NQRPDLFGC +A
Sbjct: 517 GGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIA 576
Query: 649 HVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPS 708
VGVMDML++HK+TIGHAW +D+GCS+ ++ F WL+KYSPLHNV+ P + D QYPS
Sbjct: 577 QVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLVKYSPLHNVKLP--EADD--IQYPS 632
Query: 709 TLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKM 768
LLLTADHDDRVVPLHSLK +AT+QY++ S + Q+NP++ ++ KAGHG G PT K+
Sbjct: 633 MLLLTADHDDRVVPLHSLKFIATLQYIVGRSRK---QSNPLLIHVDTKAGHGAGKPTAKV 689
Query: 769 IDEAADRYGFMAKMLGASWV 788
I+E +D + F+A+ L W+
Sbjct: 690 IEEVSDMFAFIARCLNVDWI 709
|
|
| RGD|620841 Prep "prolyl endopeptidase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1682 (597.2 bits), Expect = 2.1e-224, Sum P(2) = 2.1e-224
Identities = 308/561 (54%), Positives = 412/561 (73%)
Query: 231 VVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDI 290
V+ + KF+ +AWTHD KG FY+ YP ++GK D GTET +NL+ + YH LGT QSED+
Sbjct: 167 VLERVKFTCMAWTHDGKGMFYNSYPQ-QDGKS-D-GTETSTNLHQKLCYHVLGTDQSEDV 223
Query: 291 LCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 350
LC + P+ PK++ +++DG+Y+++ I E CDPVN+++YCDL +G G +G+L
Sbjct: 224 LCAEFPDEPKWMGGAELSDDGRYVLLSIWEGCDPVNRLWYCDLQ---QGSNGI---NGIL 277
Query: 351 PFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDV 408
+VKLID F+ +Y+ I N+ TVFTF TN+++P Y++I +D +P++ W ++PE E+DV
Sbjct: 278 KWVKLIDNFEGEYDYITNEGTVFTFKTNRNSPNYRLINIDFTDPDESKWKVLVPEHEKDV 337
Query: 409 LESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFIS 468
LE V N +++ YL +VK +LQ+ DL G+LL P+++GSV S R++DS +F
Sbjct: 338 LEWVACVRSNFLVLCYLRNVKNILQLHDLTTGALLKTFPLDVGSVVGYSGRKKDSEIFYQ 397
Query: 469 FTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVS 528
FTSFL PG++Y C+L E E ++FRE + G D S++ QVF PSKDG TKIPMFIV
Sbjct: 398 FTSFLSPGVIYHCDLTREELEPRVFREVTVKGIDASDYQTIQVFYPSKDG-TKIPMFIVH 456
Query: 529 KKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 588
KK IKLDGSHP LYGYGGFNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHK
Sbjct: 457 KKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHK 516
Query: 589 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA 648
GG LA KQNCFDDF A+EYLI GYT S++L I GGSNGGLLV AC NQRPDLFGC +A
Sbjct: 517 GGILANKQNCFDDFQCAAEYLIKEGYTTSKRLTINGGSNGGLLVAACANQRPDLFGCVIA 576
Query: 649 HVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPS 708
VGVMDML++HKFTIGHAW +D+GCS+ ++ F WL+KYSPLHNV+ P + D QYPS
Sbjct: 577 QVGVMDMLKFHKFTIGHAWTTDYGCSDSKQHFEWLLKYSPLHNVKLP--EADD--IQYPS 632
Query: 709 TLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKM 768
LLLTADHDDRVVPLHSLK +AT+QY++ S + Q+NP++ ++ KAGHG G PT K+
Sbjct: 633 MLLLTADHDDRVVPLHSLKFIATLQYIVGRSRK---QSNPLLIHVDTKAGHGPGKPTAKV 689
Query: 769 IDEAADRYGFMAKMLGASWVE 789
I+E +D + F+A+ L W++
Sbjct: 690 IEEVSDMFAFIARCLNIEWIQ 710
|
|
| UNIPROTKB|O70196 Prep "Prolyl endopeptidase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1682 (597.2 bits), Expect = 2.1e-224, Sum P(2) = 2.1e-224
Identities = 308/561 (54%), Positives = 412/561 (73%)
Query: 231 VVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDI 290
V+ + KF+ +AWTHD KG FY+ YP ++GK D GTET +NL+ + YH LGT QSED+
Sbjct: 167 VLERVKFTCMAWTHDGKGMFYNSYPQ-QDGKS-D-GTETSTNLHQKLCYHVLGTDQSEDV 223
Query: 291 LCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 350
LC + P+ PK++ +++DG+Y+++ I E CDPVN+++YCDL +G G +G+L
Sbjct: 224 LCAEFPDEPKWMGGAELSDDGRYVLLSIWEGCDPVNRLWYCDLQ---QGSNGI---NGIL 277
Query: 351 PFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDV 408
+VKLID F+ +Y+ I N+ TVFTF TN+++P Y++I +D +P++ W ++PE E+DV
Sbjct: 278 KWVKLIDNFEGEYDYITNEGTVFTFKTNRNSPNYRLINIDFTDPDESKWKVLVPEHEKDV 337
Query: 409 LESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFIS 468
LE V N +++ YL +VK +LQ+ DL G+LL P+++GSV S R++DS +F
Sbjct: 338 LEWVACVRSNFLVLCYLRNVKNILQLHDLTTGALLKTFPLDVGSVVGYSGRKKDSEIFYQ 397
Query: 469 FTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVS 528
FTSFL PG++Y C+L E E ++FRE + G D S++ QVF PSKDG TKIPMFIV
Sbjct: 398 FTSFLSPGVIYHCDLTREELEPRVFREVTVKGIDASDYQTIQVFYPSKDG-TKIPMFIVH 456
Query: 529 KKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 588
KK IKLDGSHP LYGYGGFNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHK
Sbjct: 457 KKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHK 516
Query: 589 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA 648
GG LA KQNCFDDF A+EYLI GYT S++L I GGSNGGLLV AC NQRPDLFGC +A
Sbjct: 517 GGILANKQNCFDDFQCAAEYLIKEGYTTSKRLTINGGSNGGLLVAACANQRPDLFGCVIA 576
Query: 649 HVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPS 708
VGVMDML++HKFTIGHAW +D+GCS+ ++ F WL+KYSPLHNV+ P + D QYPS
Sbjct: 577 QVGVMDMLKFHKFTIGHAWTTDYGCSDSKQHFEWLLKYSPLHNVKLP--EADD--IQYPS 632
Query: 709 TLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKM 768
LLLTADHDDRVVPLHSLK +AT+QY++ S + Q+NP++ ++ KAGHG G PT K+
Sbjct: 633 MLLLTADHDDRVVPLHSLKFIATLQYIVGRSRK---QSNPLLIHVDTKAGHGPGKPTAKV 689
Query: 769 IDEAADRYGFMAKMLGASWVE 789
I+E +D + F+A+ L W++
Sbjct: 690 IEEVSDMFAFIARCLNIEWIQ 710
|
|
| MGI|MGI:1270863 Prep "prolyl endopeptidase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1681 (596.8 bits), Expect = 7.2e-224, Sum P(2) = 7.2e-224
Identities = 306/561 (54%), Positives = 409/561 (72%)
Query: 231 VVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDI 290
V+ + KF+ +AWTHD KG FY+ YP ++GK D GTET +NL+ + YH LGT QSEDI
Sbjct: 167 VLERVKFTCMAWTHDGKGMFYNSYPQ-QDGKS-D-GTETSTNLHQKLCYHVLGTDQSEDI 223
Query: 291 LCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 350
LC + P+ PK++ +++DG+Y+++ I E CDPVN+++YCDL P G+ G +L
Sbjct: 224 LCAEFPDEPKWMGGAELSDDGRYVLLSIWEGCDPVNRLWYCDLQQEPNGITG------IL 277
Query: 351 PFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDV 408
+VKLID F+ +Y+ + N+ TVFTF TN+++P Y++I +D +P++ W ++PE E+DV
Sbjct: 278 KWVKLIDNFEGEYDYVTNEGTVFTFKTNRNSPNYRLINIDFTDPDESKWKVLVPEHEKDV 337
Query: 409 LESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFIS 468
LE V N +++ YL DVK +LQ+ DL G+LL P+++GSV S R++DS +F
Sbjct: 338 LEWVACVRSNFLVLCYLHDVKNILQLHDLTTGALLKTFPLDVGSVVGYSGRKKDSEIFYQ 397
Query: 469 FTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVS 528
FTSFL PG++Y C+L E E +FRE + G D +++ Q+F PSKDG TKIPMFIV
Sbjct: 398 FTSFLSPGVIYHCDLTKEELEPMVFREVTVKGIDAADYQTIQIFYPSKDG-TKIPMFIVH 456
Query: 529 KKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 588
KK IKLDGSHP LYGYGGFNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHK
Sbjct: 457 KKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHK 516
Query: 589 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA 648
GG LA KQNCFDDF A+EYLI GYT ++L I GGSNGGLLV AC NQRPDLFGC +A
Sbjct: 517 GGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIA 576
Query: 649 HVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPS 708
VGVMDML++HKFTIGHAW +D+GCS+ ++ F WL+KYSPLHNV+ P + D QYPS
Sbjct: 577 QVGVMDMLKFHKFTIGHAWTTDYGCSDTKQHFEWLLKYSPLHNVKLP--EADD--IQYPS 632
Query: 709 TLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKM 768
LLLTADHDDRVVPLHSLK +AT+QY++ S + Q+NP++ ++ KAGHG G PT K+
Sbjct: 633 MLLLTADHDDRVVPLHSLKFIATLQYIVGRSRK---QSNPLLIHVDTKAGHGAGKPTAKV 689
Query: 769 IDEAADRYGFMAKMLGASWVE 789
I+E +D + F+A+ L W++
Sbjct: 690 IEEVSDMFAFIARCLNIEWIQ 710
|
|
| UNIPROTKB|P23687 PREP "Prolyl endopeptidase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1676 (595.0 bits), Expect = 4.0e-223, Sum P(2) = 4.0e-223
Identities = 307/560 (54%), Positives = 404/560 (72%)
Query: 231 VVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDI 290
V+ + KFS +AWTHD KG FY+ YP ++GK D GTET +NL+ + YYH LGT QSEDI
Sbjct: 167 VLERVKFSCMAWTHDGKGMFYNAYPQ-QDGKS-D-GTETSTNLHQKLYYHVLGTDQSEDI 223
Query: 291 LCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 350
LC + P+ PK++ +++DG+Y+++ I E CDPVN+++YCDL G+ G +L
Sbjct: 224 LCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG------IL 277
Query: 351 PFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDV 408
+VKLID F+ +Y+ + N+ TVFTF TN+ +P Y++I +D +P + W ++PE E+DV
Sbjct: 278 KWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV 337
Query: 409 LESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFIS 468
LE V N +++ YL DVK LQ+ DL G+LL P+E+GSV S +++D+ +F
Sbjct: 338 LEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQ 397
Query: 469 FTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVS 528
FTSFL PGI+Y C+L E E ++FRE + G D S++ Q+F PSKDG TKIPMFIV
Sbjct: 398 FTSFLSPGIIYHCDLTKEELEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVH 456
Query: 529 KKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 588
KK IKLDGSHP LYGYGGFNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHK
Sbjct: 457 KKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHK 516
Query: 589 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA 648
GG LA KQNCFDDF A+EYLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A
Sbjct: 517 GGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIA 576
Query: 649 HVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPS 708
VGVMDML++HK+TIGHAW +D+GCS+ ++ F WLIKYSPLHNV+ P + D QYPS
Sbjct: 577 QVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLP--EADD--IQYPS 632
Query: 709 TLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKM 768
LLLTADHDDRVVPLHSLK +AT+QY++ S + Q NP++ ++ KAGHG G PT K+
Sbjct: 633 MLLLTADHDDRVVPLHSLKFIATLQYIVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKV 689
Query: 769 IDEAADRYGFMAKMLGASWV 788
I+E +D + F+A+ L W+
Sbjct: 690 IEEVSDMFAFIARCLNIDWI 709
|
|
| ZFIN|ZDB-GENE-050522-14 prep "prolyl endopeptidase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1658 (588.7 bits), Expect = 4.0e-223, Sum P(2) = 4.0e-223
Identities = 309/560 (55%), Positives = 406/560 (72%)
Query: 232 VSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291
+ + KF+ ++WTHD KG FY+ YP +EGK D GTET +NL+ + YYH LGT QS+D+L
Sbjct: 167 LERVKFTCMSWTHDGKGLFYNSYPE-QEGKS-D-GTETSTNLHQKLYYHVLGTPQSQDVL 223
Query: 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 351
C + P+ PK++ V++DG+Y+++ I E CDPVN+++YCDL+ P+G+ G LLP
Sbjct: 224 CAEFPDEPKWMSGVEVSDDGRYVLLSIREGCDPVNRLWYCDLNEEPQGITG------LLP 277
Query: 352 FVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVL 409
+VKLID FDA+YE + N+ TVFTF TN +AP+Y++I +D +P+ W E+IP+ ++DV+
Sbjct: 278 WVKLIDNFDAEYEYVTNEGTVFTFKTNLEAPQYRLINIDFTQPSVSQWKELIPQHDKDVI 337
Query: 410 ESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISF 469
AT + + V +L DVK VL++ L +G + P+++GS+ + R++DS +F SF
Sbjct: 338 VFATCTFSSFLFVCFLHDVKNVLKMFHLSSGEEIRTFPLDVGSIVGFTGRKKDSEIFYSF 397
Query: 470 TSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSK 529
TSFL P I+Y C+L E + +FRE + GF+ +++ QVF PSKDG T+IPMFIV K
Sbjct: 398 TSFLSPAIIYHCDLTMEPLQPHVFREVTVKGFNPADYQTTQVFYPSKDG-TQIPMFIVHK 456
Query: 530 KNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKG 589
K IK+DGSHP LYGYGGFNIS+TPS+SVSR I +RHLG V +ANIRGGGEYGE WHKG
Sbjct: 457 KGIKMDGSHPAFLYGYGGFNISITPSYSVSRLIFIRHLGGVLAVANIRGGGEYGETWHKG 516
Query: 590 GALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 649
G LA KQNCF DF A+EYLI GYT +KL I GGSNGGLLV AC+NQRPDLFGCA+A
Sbjct: 517 GMLANKQNCFTDFQCAAEYLIKEGYTSPKKLTINGGSNGGLLVAACVNQRPDLFGCAVAQ 576
Query: 650 VGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPST 709
VGVMDML++HKFTIGHAW +DFGCSE +E+F WLIKYSPLHN++ P QYP+
Sbjct: 577 VGVMDMLKFHKFTIGHAWTTDFGCSEIKEQFDWLIKYSPLHNIQVPEGDG----VQYPAV 632
Query: 710 LLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMI 769
LLLT DHDDRVVPLHSLK +AT+Q V+ + Q NP+ I+ K+GHG G PT K+I
Sbjct: 633 LLLTGDHDDRVVPLHSLKYIATLQNVIG---QCPGQKNPLFIYIDTKSGHGAGKPTSKVI 689
Query: 770 DEAADRYGFMAKMLGASWVE 789
E AD Y F+A+ L SW+E
Sbjct: 690 QEVADTYAFIARCLNLSWLE 709
|
|
| UNIPROTKB|Q9XTA2 PREP "Prolyl endopeptidase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1657 (588.4 bits), Expect = 1.7e-222, Sum P(2) = 1.7e-222
Identities = 303/561 (54%), Positives = 403/561 (71%)
Query: 231 VVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDI 290
V+ + KFS +AWTHD KG FY+ YP ++GK D GTET +NL+ + YH LGT QSEDI
Sbjct: 167 VLERVKFSCMAWTHDGKGMFYNAYPQ-QDGKS-D-GTETSTNLHQKLCYHVLGTDQSEDI 223
Query: 291 LCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 350
LC + P+ PK++ +++DG+Y+++ I E CDPVN+++YCDL P G+ G +L
Sbjct: 224 LCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLHQEPNGITG------IL 277
Query: 351 PFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDV 408
+VKLID F+ +Y+ + N+ TVFTF TN+ +P Y++I +D +P + W ++PE E+DV
Sbjct: 278 KWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESRWKVLVPEHEKDV 337
Query: 409 LESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFIS 468
LE V N +++ YL DVK LQ+ D+ G+LL P+E+GSV S +++D+ +F
Sbjct: 338 LEWVACVRSNFLVLCYLHDVKNTLQLHDMATGALLKTFPLEVGSVVGYSGQKKDTEIFYQ 397
Query: 469 FTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVS 528
FTSFL PGI+Y C+L E E ++FRE + G D S++ Q+F PSKDG TKIPMFIV
Sbjct: 398 FTSFLSPGIIYHCDLTKEELEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVH 456
Query: 529 KKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 588
KK IKLDGSHP LYGYGGFNIS+TP++SV R I +RH+G V +ANIRGGGEYGE WHK
Sbjct: 457 KKGIKLDGSHPAFLYGYGGFNISITPNYSVCRLIFVRHMGGVLAVANIRGGGEYGETWHK 516
Query: 589 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA 648
GG LA KQNCFDDF A+EYLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A
Sbjct: 517 GGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIA 576
Query: 649 HVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPS 708
VGVMDML++HK+TIGHAW +D+GCS+ ++ F WLIKYSPLHNV+ P + D QYPS
Sbjct: 577 QVGVMDMLKFHKYTIGHAWTTDYGCSDNKQHFEWLIKYSPLHNVKLP--EADD--IQYPS 632
Query: 709 TLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKM 768
LLLTADHDDRVVPLHS K +AT+Q+++ S + Q NP++ ++ KAGHG G PT K+
Sbjct: 633 MLLLTADHDDRVVPLHSPKFIATLQHLVGRSRK---QNNPLLIHVDTKAGHGAGKPTAKV 689
Query: 769 IDEAADRYGFMAKMLGASWVE 789
I+E +D + F+A+ L W++
Sbjct: 690 IEEVSDMFAFIARCLNIDWIQ 710
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9XTA2 | PPCE_BOVIN | 3, ., 4, ., 2, 1, ., 2, 6 | 0.5012 | 0.8948 | 0.9943 | yes | no |
| Q9QUR6 | PPCE_MOUSE | 3, ., 4, ., 2, 1, ., 2, 6 | 0.5051 | 0.8948 | 0.9943 | yes | no |
| O70196 | PPCE_RAT | 3, ., 4, ., 2, 1, ., 2, 6 | 0.5076 | 0.8948 | 0.9943 | yes | no |
| Q86AS5 | PPCE_DICDI | 3, ., 4, ., 2, 1, ., 2, 6 | 0.3556 | 0.9150 | 0.95 | yes | no |
| P48147 | PPCE_HUMAN | 3, ., 4, ., 2, 1, ., 2, 6 | 0.5044 | 0.8935 | 0.9929 | yes | no |
| P23687 | PPCE_PIG | 3, ., 4, ., 2, 1, ., 2, 6 | 0.5044 | 0.8935 | 0.9929 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 789 | |||
| COG1505 | 648 | COG1505, COG1505, Serine proteases of the peptidas | 1e-123 | |
| COG1770 | 682 | COG1770, PtrB, Protease II [Amino acid transport a | 2e-72 | |
| pfam00326 | 212 | pfam00326, Peptidase_S9, Prolyl oligopeptidase fam | 8e-65 | |
| pfam02897 | 412 | pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, | 4e-63 | |
| pfam02897 | 412 | pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, | 4e-57 | |
| PRK10115 | 686 | PRK10115, PRK10115, protease 2; Provisional | 2e-39 | |
| COG1505 | 648 | COG1505, COG1505, Serine proteases of the peptidas | 2e-22 | |
| COG1506 | 620 | COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin | 5e-15 | |
| COG1770 | 682 | COG1770, PtrB, Protease II [Amino acid transport a | 2e-10 |
| >gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 382 bits (984), Expect = e-123
Identities = 196/552 (35%), Positives = 279/552 (50%), Gaps = 59/552 (10%)
Query: 235 FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK 294
FKF I+W D G F SRY PKE + L Q D++
Sbjct: 154 FKFPGISWL-DDDGVFVSRYWRPKEKTPSGYP-----RVVKRLKRGKLFEGQEGDVMVNA 207
Query: 295 DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK 354
+ + F ++EDG + ++ + + + K
Sbjct: 208 RGDQDPWGFRLVLSEDGDFFMLSLWLGTSGKGLIKLGLPD------------KVGYEWGK 255
Query: 355 LIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATA 414
L++ A + D + LT++D K+I E IPE E LE
Sbjct: 256 LVNTLRADWTFADVDYGLLYLLTDEDLELGKVIA----------EFIPE-EEQSLEQVVT 304
Query: 415 VNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP-IEIGSVNAISARREDSVVFISFTSFL 473
++++ L +V L++ DLK G + ++ G++ SA ++ VF++FTSF
Sbjct: 305 TK-DKLVAGTLDNVSGRLEVYDLK-GERIEEVELPPPGALGMGSADKDGDEVFLAFTSFT 362
Query: 474 IPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIK 533
P +Y+ +L E+++ RE + FD + V Q F SKDG T+IP FIV +K K
Sbjct: 363 TPSTLYRLDLFGG--ELEVIREQPVQ-FDADNYEVEQFFATSKDG-TRIPYFIV-RKGAK 417
Query: 534 LDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 593
D +P LLY YGGFNIS+TP FS SR + + G VF +ANIRGGGE+G EWH+ G
Sbjct: 418 KD-ENPTLLYAYGGFNISLTPRFSGSRKLWLER-GGVFVLANIRGGGEFGPEWHQAGMKE 475
Query: 594 KKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653
KQN FDDFI+ +E LI G T KL I+GGSNGGLLVGA + QRP+LFG A+ V ++
Sbjct: 476 NKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLL 535
Query: 654 DMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQ-YPSTLLL 712
DMLRYH T G +W++++G ++ E+ +L+ YSP HN+ KP Q YP TL+
Sbjct: 536 DMLRYHLLTAGSSWIAEYGNPDDPEDRAFLLAYSPYHNL---------KPGQKYPPTLIT 586
Query: 713 TADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEA 772
T+ HDDRV P H+ K A +Q V P++ R E K GHG PT ++ E
Sbjct: 587 TSLHDDRVHPAHARKFAAKLQEV----------GAPVLLREETKGGHGGAAPTAEIAREL 636
Query: 773 ADRYGFMAKMLG 784
AD F+ + LG
Sbjct: 637 ADLLAFLLRTLG 648
|
Length = 648 |
| >gnl|CDD|224684 COG1770, PtrB, Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 249 bits (639), Expect = 2e-72
Identities = 156/563 (27%), Positives = 253/563 (44%), Gaps = 73/563 (12%)
Query: 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC--WK 294
S AW D K FY +++ + + H LGT S D L K
Sbjct: 176 SGSFAWAADGKTLFY--------------TRLDENHRPDKVWRHRLGTPGSSDELVYEEK 221
Query: 295 DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK 354
D + S + Y+V I ++V L A P V
Sbjct: 222 DDR---FFLSVGRSRSEAYIV--ISLGSHITSEVRL--LDA---------DDPEAEPKVV 265
Query: 355 LIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLK-EPNDWFEVIPEAERDVLESAT 413
L +Y V D F L+N D +K++R + + ++W E+IP E LE
Sbjct: 266 LPRENGVEYSVEHGGD-RFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVD 324
Query: 414 AVNLNQMIVSYLSDVKYVLQIRDLKNGSLLH-QLPIEIGSVN-AISARREDSVVFISFTS 471
+ +++ + + +RD K G E S + + + + S++S
Sbjct: 325 LFA-DHLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLSGNPEFDSDRLRYSYSS 383
Query: 472 FLIPGIVYQCNLKTETPEMKIFRETIIP-GFDRSEFHVHQVFVPSKDGSTKIPMFIVSKK 530
P ++ ++ T E + ++ +P GFD ++ +++ + DG ++P+ +V +K
Sbjct: 384 MTTPATLFDYDMATG--ERTLLKQQEVPGGFDPEDYVSRRIWATADDG-VQVPVSLVYRK 440
Query: 531 NIKLDGSHPCLLYGYGGFNISVTPSFSVSR-TILMRHLGAVFCIANIRGGGEYGEEWHKG 589
+ KLDGS P LLYGYG + IS+ PSFS++R ++L R G V+ IA++RGGGE G W++
Sbjct: 441 DTKLDGSAPLLLYGYGAYGISMDPSFSIARLSLLDR--GFVYAIAHVRGGGELGRAWYED 498
Query: 590 GALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 649
G L K+N F DFI+A+ +L+ GYT ++ GGS GG+L+GA N PDLF +A
Sbjct: 499 GKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQ 558
Query: 650 VGVMDMLRYHKFTIGHA--------WVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPD 701
V +D+L T+ W ++G + E + ++ YSP NV Q
Sbjct: 559 VPFVDVLT----TMLDPSLPLTVTEW-DEWGNPLDPEYYDYIKSYSPYDNVE---AQP-- 608
Query: 702 KPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGV 761
YP+ L+ T +D RV K +A ++ E NP++ + AGHG
Sbjct: 609 ----YPAILVTTGLNDPRVQYWEPAKWVAKLR-------ELKTDGNPLLLKTNMDAGHGG 657
Query: 762 GLPTQKMIDEAADRYGFMAKMLG 784
+ ++E A Y F+ K+ G
Sbjct: 658 ASGRFQRLEEIAFEYAFLLKLAG 680
|
Length = 682 |
| >gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family | Back alignment and domain information |
|---|
Score = 214 bits (548), Expect = 8e-65
Identities = 94/235 (40%), Positives = 119/235 (50%), Gaps = 25/235 (10%)
Query: 554 PSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG 613
PSFS L+ G V +AN RG G YG WH G QN FDDFI+A+EYLI+ G
Sbjct: 1 PSFS-WNLQLLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQG 59
Query: 614 YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHA-WVSDFG 672
Y +L I GGS GG L GA +NQRPDLF A+A V V+D L Y T ++G
Sbjct: 60 YVDPDRLAIWGGSYGGYLTGAALNQRPDLFKAAVAVVPVVDWLTYMSDTSPFTERYMEWG 119
Query: 673 CSEEEEEFY-WLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLAT 731
+ EE Y +L YSP NV+ YP LL+ HDDRV P +LKL+A
Sbjct: 120 NPWDNEEGYRYLSPYSPYDNVK-----------AYPPLLLIHGLHDDRVPPAEALKLVAA 168
Query: 732 MQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 786
+Q + ++ I GHG G P K +E A F+ K+LG +
Sbjct: 169 LQA----------KGKNVLLLIFPDEGHGGGKPRNK-REEYARELAFLLKVLGGT 212
|
Length = 212 |
| >gnl|CDD|217275 pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, N-terminal beta-propeller domain | Back alignment and domain information |
|---|
Score = 216 bits (553), Expect = 4e-63
Identities = 89/262 (33%), Positives = 134/262 (51%), Gaps = 24/262 (9%)
Query: 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD 295
KFS I W D+KGFFYSRY P+ G NL + + H LGT QS+D+L +++
Sbjct: 172 KFSGIVWAPDNKGFFYSRYDEPERGST---------NLNQKVWRHRLGTPQSQDVLVFEE 222
Query: 296 PEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL 355
P+ P + ++DG+YL + D N++Y DL+ + P K+
Sbjct: 223 PDEPFWYLGAERSDDGKYLFISSASGTDV-NELYVLDLAQ-----------EKDGPLRKV 270
Query: 356 IDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERDVLESAT 413
+ FD Y + ++ F FLTN AP ++++RVDL +P+ W +VI E DVL
Sbjct: 271 VPRFDGVYYYVEHEGDTFYFLTNDGAPNFRLVRVDLNDPSPADWKDVIVEHREDVLLEEI 330
Query: 414 AVNLNQMIVSYLSDVKYVLQIRDLKNG-SLLHQLPIEIGSVNAISARREDSVVFISFTSF 472
V N +++SY D LQ+ DL G L + +GSV++ S +D + SF+SF
Sbjct: 331 TVFGNYLVLSYRRDALSRLQVFDLGGGGVLFEEFLPGVGSVSSASGEYDDDELRYSFSSF 390
Query: 473 LIPGIVYQCNLKTETPEMKIFR 494
L PG +Y +L T E+ R
Sbjct: 391 LTPGTIYDLDLATGELELLKDR 412
|
This unusual 7-stranded beta-propeller domain protects the catalytic triad of prolyl oligopeptidase (see pfam00326), excluding larger peptides and proteins from proteolysis in the cytosol. Length = 412 |
| >gnl|CDD|217275 pfam02897, Peptidase_S9_N, Prolyl oligopeptidase, N-terminal beta-propeller domain | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 4e-57
Identities = 78/173 (45%), Positives = 107/173 (61%), Gaps = 6/173 (3%)
Query: 14 PVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNC-DVRDKLRE 72
P RRDE+VVD+YHG + DPYRWLED D+ EV +V+ + + T+ L +R+K++E
Sbjct: 1 PPTRRDETVVDEYHGDVVSDPYRWLEDDDSPEVLAWVEAENKYTEDFLAQLKPLREKIKE 60
Query: 73 KITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSL---DAKAKVLLDPNTLSDD 129
++T L + APF++G Y+YF NTG + QSVLY +D+ +V LDPNTLS+D
Sbjct: 61 ELTALINYDDISAPFRKGGYYYYFRNTGGKNQSVLYRRDAGEGPGETEEVFLDPNTLSED 120
Query: 130 G--TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCF 180
G T AL + S D + LAY+LS SGSDW TI+ +E D L V F
Sbjct: 121 GDFTVALDGYAFSPDGRLLAYSLSLSGSDWYTIRFRDVETGEPLPDVLEGVKF 173
|
This unusual 7-stranded beta-propeller domain protects the catalytic triad of prolyl oligopeptidase (see pfam00326), excluding larger peptides and proteins from proteolysis in the cytosol. Length = 412 |
| >gnl|CDD|182247 PRK10115, PRK10115, protease 2; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (392), Expect = 2e-39
Identities = 136/532 (25%), Positives = 244/532 (45%), Gaps = 83/532 (15%)
Query: 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE 297
S W +DS F+Y R + L ++ + H +GT S+D L +++ +
Sbjct: 175 PSFVWANDSWTFYYVR-------------KHPVTLLPYQVWRHTIGTPASQDELVYEEKD 221
Query: 298 HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID 357
Y+ S H T Y+V I ++V D + L + PFV L
Sbjct: 222 DTFYV-SLHKTTSKHYVV--IHLASATTSEVLLLD-AELADAE----------PFVFLPR 267
Query: 358 GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL 417
D +Y + + F +N+ + + R +++ W E+IP E +LE T
Sbjct: 268 RKDHEYSL-DHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFT---- 322
Query: 418 NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISF-------- 469
+ +L V++ R + + L Q+ + V I+ V +I++
Sbjct: 323 --LFTDWL-----VVEERQ-RGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSR 374
Query: 470 -----TSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPM 524
+S P +++ ++ +T E ++ ++T +PGFD + + +++ ++DG ++P+
Sbjct: 375 LRYGYSSMTTPDTLFELDM--DTGERRVLKQTEVPGFDAANYRSEHLWITARDG-VEVPV 431
Query: 525 FIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE 584
+V + G +P L+YGYG + S+ FS SR L+ G V+ I ++RGGGE G+
Sbjct: 432 SLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDR-GFVYAIVHVRGGGELGQ 490
Query: 585 EWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIE-GGSNGGLLVGACINQRPDLF 643
+W++ G KK+N F+D++ A + L+ GY S LC GGS GG+L+G INQRP+LF
Sbjct: 491 QWYEDGKFLKKKNTFNDYLDACDALLKLGYG-SPSLCYGMGGSAGGMLMGVAINQRPELF 549
Query: 644 GCALAHVGVMDMLRYH-----KFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQ 698
+A V +D++ T G ++G ++ + + ++ YSP NV
Sbjct: 550 HGVIAQVPFVDVVTTMLDESIPLTTGE--FEEWGNPQDPQYYEYMKSYSPYDNVT----- 602
Query: 699 NPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQ--------YVLCTSLEN 742
YP L+ T HD +V K +A ++ +LCT +++
Sbjct: 603 ----AQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDS 650
|
Length = 686 |
| >gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 2e-22
Identities = 45/136 (33%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Query: 33 DPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKLREKITKLFDSPRYDAPFKRGNK 92
DPYRWLED D+ E +V+ Q T L R +++ +L+D PF+RG +
Sbjct: 4 DPYRWLEDLDSAEALKWVEAQNAKTREFLGEDSARAASDKRLLELWDYEDIPIPFERGGR 63
Query: 93 YFYFHN-----TGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDG--TAALIKVSVSEDAKY 145
Y+ F GL ++ L S + +VL+D + LS D AL SV D
Sbjct: 64 YYNFWQDALYPRGLYRRTTLETYRSAKPEWEVLIDVDALSADLGDKVALGGASVLPDGTR 123
Query: 146 LAYALSYSGSDWATIK 161
L Y+LS GSD +
Sbjct: 124 LLYSLSIGGSDAGITR 139
|
Length = 648 |
| >gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 5e-15
Identities = 52/226 (23%), Positives = 83/226 (36%), Gaps = 16/226 (7%)
Query: 511 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAV 570
V S DG T I ++ +P ++Y +GG + V SF+ +L G
Sbjct: 368 VTYKSNDGET-IHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLA-SAGYA 425
Query: 571 FCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGL 630
N RG YG E+ +D I+A + L+ ++ I GGS GG
Sbjct: 426 VLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGY 485
Query: 631 LVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG--HAWVSDFGCSEEEEEFYWLIKYSP 688
+ + P GV +L + + T G + G E+ E Y SP
Sbjct: 486 MTLLAATKTPRFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGGGPPEDREKYE--DRSP 543
Query: 689 LHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQY 734
+ N P LL+ + DDRV + +L+ ++
Sbjct: 544 IFYAD-----NIKTP-----LLLIHGEEDDRVPIEQAEQLVDALKR 579
|
Length = 620 |
| >gnl|CDD|224684 COG1770, PtrB, Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-10
Identities = 40/192 (20%), Positives = 81/192 (42%), Gaps = 16/192 (8%)
Query: 14 PVARRDESVVDDYHGVKIVDPYRWLEDPD--AEEVKDFVQKQVELTDSVLKNC-DVRDKL 70
P+A++ +HG VD Y WL D + EV +++ + T++V+ + ++ K+
Sbjct: 7 PIAKK-VPTTRTHHGDTRVDDYAWLRDDNWSNPEVLAYLEAENAYTEAVMAHLQPLQKKI 65
Query: 71 REKI---TKLFDSPRYDAPFKRGNKYFY--FHNTGLQPQSVLYVQDSLDAKAKVLLDPNT 125
E+I K D P+++G +Y P + + + +VLLD N
Sbjct: 66 FEEIKGRIKEDDLS---VPYRKGPYEYYSRTEEGKEYPIYCRQPDEGGEGE-EVLLDVNK 121
Query: 126 LSDDGT-AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVC--FCF 182
++ +L S+S D LAY++ G + T++ + D ++ F +
Sbjct: 122 EAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEITNTSGSFAW 181
Query: 183 SHSFGYFFHLTI 194
+ F+ +
Sbjct: 182 AADGKTLFYTRL 193
|
Length = 682 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 789 | |||
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 100.0 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 100.0 | |
| PRK10115 | 686 | protease 2; Provisional | 100.0 | |
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 100.0 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 100.0 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 100.0 | |
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 100.0 | |
| PF00326 | 213 | Peptidase_S9: Prolyl oligopeptidase family This fa | 100.0 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 99.98 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 99.83 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 99.82 | |
| PRK10566 | 249 | esterase; Provisional | 99.82 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.81 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 99.81 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 99.8 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 99.77 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 99.77 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 99.77 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.76 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.75 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 99.74 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.74 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 99.74 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.74 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.73 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.73 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.73 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 99.72 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.72 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 99.71 | |
| COG1647 | 243 | Esterase/lipase [General function prediction only] | 99.71 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.7 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 99.69 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 99.69 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.69 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 99.68 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.67 | |
| PRK05371 | 767 | x-prolyl-dipeptidyl aminopeptidase; Provisional | 99.66 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.65 | |
| PRK11460 | 232 | putative hydrolase; Provisional | 99.64 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.63 | |
| PF07859 | 211 | Abhydrolase_3: alpha/beta hydrolase fold A web pag | 99.63 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.63 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 99.63 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.62 | |
| KOG1455 | 313 | consensus Lysophospholipase [Lipid transport and m | 99.62 | |
| KOG1515 | 336 | consensus Arylacetamide deacetylase [Defense mecha | 99.61 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.6 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.59 | |
| KOG1552 | 258 | consensus Predicted alpha/beta hydrolase [General | 99.58 | |
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 99.58 | |
| PF02230 | 216 | Abhydrolase_2: Phospholipase/Carboxylesterase; Int | 99.55 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 99.55 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 99.53 | |
| KOG4391 | 300 | consensus Predicted alpha/beta hydrolase BEM46 [Ge | 99.52 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.51 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.51 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 99.5 | |
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 99.48 | |
| PLN02511 | 388 | hydrolase | 99.48 | |
| COG3509 | 312 | LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda | 99.47 | |
| TIGR03611 | 257 | RutD pyrimidine utilization protein D. This protei | 99.47 | |
| PRK10985 | 324 | putative hydrolase; Provisional | 99.46 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.46 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.45 | |
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 99.44 | |
| PF12715 | 390 | Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8 | 99.43 | |
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 99.43 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.42 | |
| PRK00870 | 302 | haloalkane dehalogenase; Provisional | 99.4 | |
| TIGR03343 | 282 | biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die | 99.39 | |
| PLN00021 | 313 | chlorophyllase | 99.39 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 99.38 | |
| PF12695 | 145 | Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3 | 99.38 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.38 | |
| PRK11071 | 190 | esterase YqiA; Provisional | 99.38 | |
| TIGR02427 | 251 | protocat_pcaD 3-oxoadipate enol-lactonase. Members | 99.35 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 99.35 | |
| TIGR03056 | 278 | bchO_mg_che_rel putative magnesium chelatase acces | 99.35 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.35 | |
| COG2945 | 210 | Predicted hydrolase of the alpha/beta superfamily | 99.33 | |
| COG0400 | 207 | Predicted esterase [General function prediction on | 99.33 | |
| TIGR01250 | 288 | pro_imino_pep_2 proline-specific peptidases, Bacil | 99.32 | |
| PLN02872 | 395 | triacylglycerol lipase | 99.31 | |
| PRK10673 | 255 | acyl-CoA esterase; Provisional | 99.31 | |
| TIGR01249 | 306 | pro_imino_pep_1 proline iminopeptidase, Neisseria- | 99.31 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.3 | |
| PRK03592 | 295 | haloalkane dehalogenase; Provisional | 99.29 | |
| PLN02824 | 294 | hydrolase, alpha/beta fold family protein | 99.29 | |
| COG0429 | 345 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.27 | |
| TIGR01738 | 245 | bioH putative pimeloyl-BioC--CoA transferase BioH. | 99.27 | |
| PLN02965 | 255 | Probable pheophorbidase | 99.26 | |
| TIGR02240 | 276 | PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer | 99.25 | |
| PRK03204 | 286 | haloalkane dehalogenase; Provisional | 99.25 | |
| TIGR03695 | 251 | menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene | 99.25 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 99.24 | |
| PF12697 | 228 | Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3 | 99.22 | |
| PF08840 | 213 | BAAT_C: BAAT / Acyl-CoA thioester hydrolase C term | 99.22 | |
| PLN03087 | 481 | BODYGUARD 1 domain containing hydrolase; Provision | 99.22 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 99.21 | |
| PLN02679 | 360 | hydrolase, alpha/beta fold family protein | 99.21 | |
| PRK06489 | 360 | hypothetical protein; Provisional | 99.2 | |
| PLN02894 | 402 | hydrolase, alpha/beta fold family protein | 99.2 | |
| TIGR01392 | 351 | homoserO_Ac_trn homoserine O-acetyltransferase. Th | 99.19 | |
| PRK00175 | 379 | metX homoserine O-acetyltransferase; Provisional | 99.15 | |
| PRK07581 | 339 | hypothetical protein; Validated | 99.15 | |
| PF00756 | 251 | Esterase: Putative esterase; InterPro: IPR000801 T | 99.15 | |
| PRK10439 | 411 | enterobactin/ferric enterobactin esterase; Provisi | 99.15 | |
| TIGR01836 | 350 | PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth | 99.15 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.14 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.14 | |
| PRK10349 | 256 | carboxylesterase BioH; Provisional | 99.14 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.12 | |
| KOG1838 | 409 | consensus Alpha/beta hydrolase [General function p | 99.11 | |
| PLN02578 | 354 | hydrolase | 99.11 | |
| KOG4178 | 322 | consensus Soluble epoxide hydrolase [Lipid transpo | 99.1 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.1 | |
| KOG3101 | 283 | consensus Esterase D [General function prediction | 99.07 | |
| KOG4667 | 269 | consensus Predicted esterase [Lipid transport and | 99.07 | |
| KOG4627 | 270 | consensus Kynurenine formamidase [Amino acid trans | 99.07 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.05 | |
| PF03583 | 290 | LIP: Secretory lipase ; InterPro: IPR005152 This e | 99.05 | |
| PRK08775 | 343 | homoserine O-acetyltransferase; Provisional | 99.04 | |
| PLN02211 | 273 | methyl indole-3-acetate methyltransferase | 99.03 | |
| cd00312 | 493 | Esterase_lipase Esterases and lipases (includes fu | 99.02 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.01 | |
| COG2272 | 491 | PnbA Carboxylesterase type B [Lipid metabolism] | 99.01 | |
| PF12740 | 259 | Chlorophyllase2: Chlorophyllase enzyme; InterPro: | 99.01 | |
| PRK11126 | 242 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl | 98.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.97 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 98.97 | |
| COG0627 | 316 | Predicted esterase [General function prediction on | 98.96 | |
| PF05728 | 187 | UPF0227: Uncharacterised protein family (UPF0227); | 98.93 | |
| PLN03084 | 383 | alpha/beta hydrolase fold protein; Provisional | 98.93 | |
| KOG3043 | 242 | consensus Predicted hydrolase related to dienelact | 98.93 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 98.9 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 98.9 | |
| KOG1454 | 326 | consensus Predicted hydrolase/acyltransferase (alp | 98.87 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 98.85 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.84 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 98.82 | |
| PRK06765 | 389 | homoserine O-acetyltransferase; Provisional | 98.8 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.79 | |
| COG2936 | 563 | Predicted acyl esterases [General function predict | 98.78 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.76 | |
| KOG4409 | 365 | consensus Predicted hydrolase/acyltransferase (alp | 98.75 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 98.73 | |
| PTZ00421 | 493 | coronin; Provisional | 98.73 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 98.72 | |
| PF03403 | 379 | PAF-AH_p_II: Platelet-activating factor acetylhydr | 98.69 | |
| PF00561 | 230 | Abhydrolase_1: alpha/beta hydrolase fold A web pag | 98.66 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 98.63 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 98.62 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.62 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.62 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.6 | |
| COG4757 | 281 | Predicted alpha/beta hydrolase [General function p | 98.6 | |
| PF00135 | 535 | COesterase: Carboxylesterase family The prints ent | 98.59 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.58 | |
| PTZ00420 | 568 | coronin; Provisional | 98.58 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.57 | |
| KOG2112 | 206 | consensus Lysophospholipase [Lipid transport and m | 98.57 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.56 | |
| PF06821 | 171 | Ser_hydrolase: Serine hydrolase; InterPro: IPR0106 | 98.55 | |
| TIGR01838 | 532 | PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, | 98.54 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 98.53 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.51 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 98.49 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 98.48 | |
| KOG2624 | 403 | consensus Triglyceride lipase-cholesterol esterase | 98.47 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 98.46 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.46 | |
| PF10340 | 374 | DUF2424: Protein of unknown function (DUF2424); In | 98.45 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.45 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.43 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 98.43 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.42 | |
| cd00707 | 275 | Pancreat_lipase_like Pancreatic lipase-like enzyme | 98.41 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 98.41 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.41 | |
| COG2382 | 299 | Fes Enterochelin esterase and related enzymes [Ino | 98.4 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.39 | |
| PF08538 | 303 | DUF1749: Protein of unknown function (DUF1749); In | 98.39 | |
| PTZ00420 | 568 | coronin; Provisional | 98.39 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 98.38 | |
| COG2819 | 264 | Predicted hydrolase of the alpha/beta superfamily | 98.35 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.35 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.34 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.33 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 98.33 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 98.33 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.32 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.31 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.31 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.31 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.3 | |
| PTZ00421 | 493 | coronin; Provisional | 98.25 | |
| KOG2382 | 315 | consensus Predicted alpha/beta hydrolase [General | 98.25 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 98.24 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.24 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.24 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 98.24 | |
| KOG3847 | 399 | consensus Phospholipase A2 (platelet-activating fa | 98.23 | |
| PF07224 | 307 | Chlorophyllase: Chlorophyllase; InterPro: IPR01082 | 98.23 | |
| KOG2984 | 277 | consensus Predicted hydrolase [General function pr | 98.22 | |
| PF06342 | 297 | DUF1057: Alpha/beta hydrolase of unknown function | 98.22 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 98.22 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.2 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 98.19 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.18 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.16 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.15 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.15 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 98.15 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.14 | |
| COG2021 | 368 | MET2 Homoserine acetyltransferase [Amino acid tran | 98.13 | |
| KOG2564 | 343 | consensus Predicted acetyltransferases and hydrola | 98.12 | |
| COG4188 | 365 | Predicted dienelactone hydrolase [General function | 98.12 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.11 | |
| COG3208 | 244 | GrsT Predicted thioesterase involved in non-riboso | 98.1 | |
| PRK10115 | 686 | protease 2; Provisional | 98.07 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.07 | |
| TIGR03230 | 442 | lipo_lipase lipoprotein lipase. Members of this pr | 98.06 | |
| COG3571 | 213 | Predicted hydrolase of the alpha/beta-hydrolase fo | 98.05 | |
| PF09752 | 348 | DUF2048: Uncharacterized conserved protein (DUF204 | 98.04 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.04 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.04 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.03 | |
| TIGR01839 | 560 | PHA_synth_II poly(R)-hydroxyalkanoic acid synthase | 98.03 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.01 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 98.0 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.0 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 97.99 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.99 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 97.98 | |
| PF02273 | 294 | Acyl_transf_2: Acyl transferase; InterPro: IPR0031 | 97.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.93 | |
| PF11339 | 581 | DUF3141: Protein of unknown function (DUF3141); In | 97.91 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 97.9 | |
| KOG1553 | 517 | consensus Predicted alpha/beta hydrolase BAT5 [Gen | 97.89 | |
| COG1073 | 299 | Hydrolases of the alpha/beta superfamily [General | 97.88 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 97.84 | |
| PF03959 | 212 | FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 | 97.84 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 97.83 | |
| KOG1516 | 545 | consensus Carboxylesterase and related proteins [G | 97.81 | |
| COG3545 | 181 | Predicted esterase of the alpha/beta hydrolase fol | 97.8 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 97.79 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 97.78 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 97.77 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 97.76 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 97.75 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 97.74 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 97.74 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 97.74 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.72 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 97.7 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 97.68 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.66 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 97.64 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 97.64 | |
| PF11144 | 403 | DUF2920: Protein of unknown function (DUF2920); In | 97.62 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 97.62 | |
| PF10142 | 367 | PhoPQ_related: PhoPQ-activated pathogenicity-relat | 97.61 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.59 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 97.59 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 97.59 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 97.56 | |
| PRK04940 | 180 | hypothetical protein; Provisional | 97.55 | |
| TIGR03502 | 792 | lipase_Pla1_cef extracellular lipase, Pla-1/cef fa | 97.52 | |
| PF05677 | 365 | DUF818: Chlamydia CHLPS protein (DUF818); InterPro | 97.52 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.5 | |
| PF05577 | 434 | Peptidase_S28: Serine carboxypeptidase S28; InterP | 97.5 | |
| TIGR01849 | 406 | PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, | 97.49 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 97.47 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 97.45 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 97.44 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.41 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.41 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 97.31 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 97.31 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 97.27 | |
| COG0596 | 282 | MhpC Predicted hydrolases or acyltransferases (alp | 97.27 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.26 | |
| PF06057 | 192 | VirJ: Bacterial virulence protein (VirJ); InterPro | 97.22 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.22 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 97.21 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.21 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 97.18 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.17 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.16 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.15 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 97.14 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 97.12 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 97.11 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 97.09 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 97.05 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 97.05 | |
| COG3150 | 191 | Predicted esterase [General function prediction on | 97.02 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 97.02 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 97.0 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 96.98 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 96.95 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 96.95 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.95 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 96.93 | |
| KOG3253 | 784 | consensus Predicted alpha/beta hydrolase [General | 96.93 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 96.89 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 96.85 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 96.84 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.77 | |
| COG4947 | 227 | Uncharacterized protein conserved in bacteria [Fun | 96.76 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 96.75 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 96.75 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 96.74 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 96.7 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 96.67 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 96.65 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 96.62 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 96.6 | |
| PF00151 | 331 | Lipase: Lipase; InterPro: IPR013818 Triglyceride l | 96.59 | |
| KOG4389 | 601 | consensus Acetylcholinesterase/Butyrylcholinestera | 96.58 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 96.57 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 96.57 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 96.54 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 96.54 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 96.54 | |
| PF05705 | 240 | DUF829: Eukaryotic protein of unknown function (DU | 96.53 | |
| PTZ00472 | 462 | serine carboxypeptidase (CBP1); Provisional | 96.53 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 96.52 | |
| KOG2551 | 230 | consensus Phospholipase/carboxyhydrolase [Amino ac | 96.51 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 96.51 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 96.45 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.43 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 96.37 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 96.37 | |
| KOG2183 | 492 | consensus Prolylcarboxypeptidase (angiotensinase C | 96.34 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 96.31 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 96.3 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 96.3 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 96.29 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 96.29 | |
| COG3243 | 445 | PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid me | 96.28 | |
| PF06028 | 255 | DUF915: Alpha/beta hydrolase of unknown function ( | 96.26 | |
| PF10230 | 266 | DUF2305: Uncharacterised conserved protein (DUF230 | 96.22 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 96.2 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 96.19 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 96.13 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 96.09 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 96.09 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.05 | |
| PF07819 | 225 | PGAP1: PGAP1-like protein; InterPro: IPR012908 The | 96.05 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 96.02 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 96.02 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 95.98 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 95.96 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 95.96 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 95.9 | |
| PLN02733 | 440 | phosphatidylcholine-sterol O-acyltransferase | 95.88 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 95.83 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.8 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 95.79 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 95.76 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 95.75 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 95.74 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 95.71 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 95.67 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.63 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 95.6 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 95.6 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.58 | |
| KOG4840 | 299 | consensus Predicted hydrolases or acyltransferases | 95.53 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 95.49 | |
| PF03096 | 283 | Ndr: Ndr family; InterPro: IPR004142 This family c | 95.44 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 95.43 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 95.4 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 95.35 | |
| PF07082 | 250 | DUF1350: Protein of unknown function (DUF1350); In | 95.34 | |
| KOG2182 | 514 | consensus Hydrolytic enzymes of the alpha/beta hyd | 95.27 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 95.26 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.26 | |
| PF08386 | 103 | Abhydrolase_4: TAP-like protein; InterPro: IPR0135 | 95.26 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 95.24 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 95.17 | |
| PF01674 | 219 | Lipase_2: Lipase (class 2); InterPro: IPR002918 Li | 95.15 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 95.11 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 95.09 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 95.02 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 95.0 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 94.92 | |
| KOG4388 | 880 | consensus Hormone-sensitive lipase HSL [Lipid tran | 94.87 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 94.81 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 94.75 | |
| KOG3967 | 297 | consensus Uncharacterized conserved protein [Funct | 94.73 | |
| PF00450 | 415 | Peptidase_S10: Serine carboxypeptidase; InterPro: | 94.71 | |
| KOG2931 | 326 | consensus Differentiation-related gene 1 protein ( | 94.61 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 94.58 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 94.54 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 94.52 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 94.45 | |
| PF05990 | 233 | DUF900: Alpha/beta hydrolase of unknown function ( | 94.41 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 94.4 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 94.37 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 94.32 | |
| PF00975 | 229 | Thioesterase: Thioesterase domain; InterPro: IPR00 | 94.31 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 94.29 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 94.05 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 94.01 | |
| PF11187 | 224 | DUF2974: Protein of unknown function (DUF2974); In | 93.88 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 93.87 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 93.72 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 93.65 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 93.63 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 93.58 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 93.52 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 93.5 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 93.46 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 93.43 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 93.3 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 92.88 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 92.87 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 92.76 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 92.45 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 92.29 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 92.14 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 92.14 | |
| PF05057 | 217 | DUF676: Putative serine esterase (DUF676); InterPr | 92.13 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 92.12 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 91.87 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 91.82 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 91.6 | |
| PLN03016 | 433 | sinapoylglucose-malate O-sinapoyltransferase | 91.57 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 91.22 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 91.19 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 90.95 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 90.73 | |
| PF12048 | 310 | DUF3530: Protein of unknown function (DUF3530); In | 90.67 | |
| PLN02209 | 437 | serine carboxypeptidase | 90.53 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 90.31 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.05 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 89.97 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 89.77 | |
| KOG1282 | 454 | consensus Serine carboxypeptidases (lysosomal cath | 89.52 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 89.47 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 89.24 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 89.08 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 88.94 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 88.62 | |
| PF02089 | 279 | Palm_thioest: Palmitoyl protein thioesterase; Inte | 88.57 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 88.43 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 88.42 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 88.36 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 88.15 | |
| PF01764 | 140 | Lipase_3: Lipase (class 3); InterPro: IPR002921 Tr | 88.15 | |
| KOG2565 | 469 | consensus Predicted hydrolases or acyltransferases | 87.89 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 87.84 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 87.78 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 87.78 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 87.7 | |
| COG3319 | 257 | Thioesterase domains of type I polyketide synthase | 87.15 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 87.11 | |
| PF11288 | 207 | DUF3089: Protein of unknown function (DUF3089); In | 86.88 | |
| COG4814 | 288 | Uncharacterized protein with an alpha/beta hydrola | 86.87 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 86.78 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 86.52 | |
| KOG3975 | 301 | consensus Uncharacterized conserved protein [Funct | 86.45 | |
| cd00741 | 153 | Lipase Lipase. Lipases are esterases that can hydr | 86.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 85.82 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 85.74 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 85.61 | |
| PF04083 | 63 | Abhydro_lipase: Partial alpha/beta-hydrolase lipas | 85.36 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 85.27 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 85.03 | |
| COG4782 | 377 | Uncharacterized protein conserved in bacteria [Fun | 84.95 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 84.54 | |
| COG1075 | 336 | LipA Predicted acetyltransferases and hydrolases w | 83.67 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 83.53 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 83.39 | |
| PF02450 | 389 | LCAT: Lecithin:cholesterol acyltransferase; InterP | 83.23 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 82.7 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 82.62 | |
| PF03283 | 361 | PAE: Pectinacetylesterase | 82.56 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 81.47 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 81.42 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 80.9 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 80.79 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 80.73 |
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-109 Score=897.52 Aligned_cols=661 Identities=28% Similarity=0.508 Sum_probs=596.8
Q ss_pred CCCccccCCceeeeecCccccCCCCcccCCC--CHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHHhhhcCCCCCCceE
Q 003878 12 QYPVARRDESVVDDYHGVKIVDPYRWLEDPD--AEEVKDFVQKQVELTDSVLKNC-DVRDKLREKITKLFDSPRYDAPFK 88 (789)
Q Consensus 12 ~~p~~~~~~~~~~~~~g~~~~D~y~wled~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 88 (789)
+||+|+|.|+ +.+.||.+++|+|+||+|.+ +|+|++||++||+|+++.++++ +++++|.+||+.+++.++.|+|.+
T Consensus 5 ~pP~a~k~~~-~~~~hg~~~~D~Y~WlRd~~~~~p~vl~yL~aEN~Yt~~~~a~~~~L~~~if~Ei~~Rik~dd~Svp~~ 83 (682)
T COG1770 5 LPPIAKKVPT-TRTHHGDTRVDDYAWLRDDNWSNPEVLAYLEAENAYTEAVMAHLQPLQKKIFEEIKGRIKEDDLSVPYR 83 (682)
T ss_pred CCCCccccce-eeeecCceeecchHhhhCCcccChHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHhhhccCcCCCCccc
Confidence 7999999995 79999999999999999999 9999999999999999999999 899999999999999999999999
Q ss_pred eCCEEEEEEEcCCCCeeEEEEecCCC-C-CceEEeccCCCCCC-CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEc
Q 003878 89 RGNKYFYFHNTGLQPQSVLYVQDSLD-A-KAKVLLDPNTLSDD-GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRI 165 (789)
Q Consensus 89 ~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~l~d~~~~~~~-~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl 165 (789)
+|+++||.+...+.+++ +|+|...+ + .+++|||+|.++++ ..++++.+++|||+++|||+++..|+++++|++.||
T Consensus 84 ~~~~~Yy~r~~~g~~y~-~~~R~~~~g~~~eevlLD~n~~A~g~~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL 162 (682)
T COG1770 84 KGPYEYYSRTEEGKEYP-IYCRQPDEGGEGEEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDL 162 (682)
T ss_pred cCCeeEEEEecCCCcce-eEEeccCCCCCceeEeecchhccCcccceeeeeeeeCCCCceEEEEEecccccEEEEEEEec
Confidence 99999999998888775 67773333 3 38999999999998 678999999999999999999999999999999999
Q ss_pred CCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeC
Q 003878 166 EDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHD 245 (789)
Q Consensus 166 ~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspD 245 (789)
+||+.+++.+.++ ..+++|.+|
T Consensus 163 ~tg~~~~d~i~~~----------------------------------------------------------~~~~~Wa~d 184 (682)
T COG1770 163 ATGEELPDEITNT----------------------------------------------------------SGSFAWAAD 184 (682)
T ss_pred ccccccchhhccc----------------------------------------------------------ccceEEecC
Confidence 9999998888876 489999999
Q ss_pred CcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCc
Q 003878 246 SKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPV 325 (789)
Q Consensus 246 g~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 325 (789)
+++|||++.++ ..++.++++|.+|++...+.+||++++ +.++.++..|.+.++|++...+.. +
T Consensus 185 ~~~lfYt~~d~--------------~~rp~kv~~h~~gt~~~~d~lvyeE~d-~~f~~~v~~s~s~~yi~i~~~~~~--t 247 (682)
T COG1770 185 GKTLFYTRLDE--------------NHRPDKVWRHRLGTPGSSDELVYEEKD-DRFFLSVGRSRSEAYIVISLGSHI--T 247 (682)
T ss_pred CCeEEEEEEcC--------------CCCcceEEEEecCCCCCcceEEEEcCC-CcEEEEeeeccCCceEEEEcCCCc--c
Confidence 99999999875 569999999999999999999999987 566679999999999999986554 7
Q ss_pred eEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEEC-CCCCCeEEeccCC
Q 003878 326 NKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDL-KEPNDWFEVIPEA 404 (789)
Q Consensus 326 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl-~~~~~~~~l~~~~ 404 (789)
+++++++.+... ..+..-+....+.+|. ..+.|++||+.+|.++.+++|+..++ .+.+.|++++++.
T Consensus 248 sE~~ll~a~~p~-----------~~p~vv~pr~~g~eY~-~eh~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~ 315 (682)
T COG1770 248 SEVRLLDADDPE-----------AEPKVVLPRENGVEYS-VEHGGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHR 315 (682)
T ss_pred eeEEEEecCCCC-----------CceEEEEEcCCCcEEe-eeecCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccC
Confidence 899999988732 2222222223333444 46779999999999889999999998 2334699999999
Q ss_pred CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC--CeeEE-EeecccCCcEEEEEEcCCCCCcEEEEE
Q 003878 405 ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE--IGSVN-AISARREDSVVFISFTSFLIPGIVYQC 481 (789)
Q Consensus 405 ~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~--~~~v~-~~s~s~d~~~l~~~~ss~~~P~~ly~~ 481 (789)
++..++++..+. ++|++..+.++.++|++++.++|+. ..|.++ ..... ..+..++++.++++++|+++|.++|.|
T Consensus 316 ~~~~l~~~~~f~-~~lVl~eR~~glp~v~v~~~~~~~~-~~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~ 393 (682)
T COG1770 316 EDVRLEGVDLFA-DHLVLLERQEGLPRVVVRDRKTGEE-RGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDY 393 (682)
T ss_pred CCceeeeeeeec-cEEEEEecccCCceEEEEecCCCce-eeEEecchhhhccccCCCCCCCccEEEEeecccccceeEEe
Confidence 999999999998 8999999999999999999988876 567776 22221 234557889999999999999999999
Q ss_pred ECCCCCceEEEeeeccCCC-CCCCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHH
Q 003878 482 NLKTETPEMKIFRETIIPG-FDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSR 560 (789)
Q Consensus 482 dl~tg~~~~~~l~~~~~~~-~~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~ 560 (789)
|+.+++ .++|+++.+++ |+++.|+.+++++++.|| ++||++|+++++.+.++++||+||+||+||.+..+.|+..+
T Consensus 394 dm~t~e--r~~LkqqeV~~g~dp~~Y~s~riwa~a~dg-v~VPVSLvyrkd~~~~g~~p~lLygYGaYG~s~~p~Fs~~~ 470 (682)
T COG1770 394 DMATGE--RTLLKQQEVPGGFDPEDYVSRRIWATADDG-VQVPVSLVYRKDTKLDGSAPLLLYGYGAYGISMDPSFSIAR 470 (682)
T ss_pred eccCCc--EEEEEeccCCCCCChhHeEEEEEEEEcCCC-cEeeEEEEEecccCCCCCCcEEEEEeccccccCCcCcccce
Confidence 999994 89999998886 999999999999999999 99999999999988899999999999999999999999999
Q ss_pred HHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC
Q 003878 561 TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRP 640 (789)
Q Consensus 561 ~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p 640 (789)
++|++ ||++++++|+||||+.|++|+++|+...|+|+|+||++|+++|+++|++++++|+++|+||||+||+++++++|
T Consensus 471 lSLlD-RGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P 549 (682)
T COG1770 471 LSLLD-RGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAP 549 (682)
T ss_pred eeeec-CceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhCh
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEecCCccccccccc-----ccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecC
Q 003878 641 DLFGCALAHVGVMDMLRYHK-----FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTAD 715 (789)
Q Consensus 641 d~f~a~v~~~p~~d~~~~~~-----~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~ 715 (789)
++|+++|++|||+|++++|. ++.. .| .|||||.+++.|++|++||||.||+.. .|||+|+++|.
T Consensus 550 ~lf~~iiA~VPFVDvltTMlD~slPLT~~-E~-~EWGNP~d~e~y~yikSYSPYdNV~a~---------~YP~ilv~~Gl 618 (682)
T COG1770 550 DLFAGIIAQVPFVDVLTTMLDPSLPLTVT-EW-DEWGNPLDPEYYDYIKSYSPYDNVEAQ---------PYPAILVTTGL 618 (682)
T ss_pred hhhhheeecCCccchhhhhcCCCCCCCcc-ch-hhhCCcCCHHHHHHHhhcCchhccccC---------CCCceEEEccc
Confidence 99999999999999998874 3333 34 899999999999999999999999986 79999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 716 HDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 716 ~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
+|+||.+||+.||+++|+.. ++++.|++|++.+++||++..++.+.+++.+..++|+.+.++.
T Consensus 619 ~D~rV~YwEpAKWvAkLR~~-------~td~~plLlkt~M~aGHgG~SgRf~~lee~A~eYaF~l~~~~~ 681 (682)
T COG1770 619 NDPRVQYWEPAKWVAKLREL-------KTDGNPLLLKTNMDAGHGGASGRFQRLEEIAFEYAFLLKLAGT 681 (682)
T ss_pred cCCccccchHHHHHHHHhhc-------ccCCCcEEEEecccccCCCCCCchHHHHHHHHHHHHHhhhccC
Confidence 99999999999999999998 7778899999999999999999999999999999999988764
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-108 Score=877.86 Aligned_cols=706 Identities=51% Similarity=0.841 Sum_probs=617.3
Q ss_pred CCCCCCccccCCceeeeecCccccCCCCcccCCCCHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHhhhcCCCCCCceE
Q 003878 9 ESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKLREKITKLFDSPRYDAPFK 88 (789)
Q Consensus 9 ~~~~~p~~~~~~~~~~~~~g~~~~D~y~wled~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (789)
++++||+++|++++++++||+++.|||+||||+++.++++||++||.||+++|+++...++|..||+++++++.+++|.+
T Consensus 2 ~~~~~P~~~k~e~~~~~~hg~~v~Dpy~Wl~d~d~~~~~~fv~~en~~t~~vl~~~e~~~kl~~em~~~i~ye~~~~p~r 81 (712)
T KOG2237|consen 2 EPLQYPVARKDESVAEDFHGVTVEDPYRWLEDPDDTEMKEFVEAENKYTDAVLEDTETKEKLFSEMTKRIDYEIITPPLR 81 (712)
T ss_pred CCCCCCCcccccchhhhcCCceecCcchhhcCCcHHHHHHHHHHhhhhhHHHHhccHHHHHHHHHhhhccCccccCCccc
Confidence 56789999999999999999999999999999999999999999999999999999877799999999999999999999
Q ss_pred eCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCC
Q 003878 89 RGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ 168 (789)
Q Consensus 89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg 168 (789)
+|++|||+++++++ |+++|||++++.++++++|+|+++++++..+..-++|.|++|++|.++..|.++..|..+..+.|
T Consensus 82 ~G~~yyY~~n~~lk-q~vl~~rr~~~~e~~~~ld~~~~~dd~tV~Ld~~~~aed~~Y~~~gls~~spD~~~ia~~~~~~~ 160 (712)
T KOG2237|consen 82 WGPWYYYFYNTGLK-QYVLYCRRLLEKEEEVFLDPNALGDDGTVLLDTNQIAEDFKYFAYGLSESSPDHKYIAYTKDTEG 160 (712)
T ss_pred cCCEEEEEEcCCce-ehhHHHHhhhhcccceecCCccCCCCceEEechhhhhhcCCceEEeecccCCCceEEEEEEcCCC
Confidence 99999999999998 89999999888888999999999999999899999999999999999999999999999998888
Q ss_pred ceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcE
Q 003878 169 IVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKG 248 (789)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~ 248 (789)
..+.+.+.++ ++..++|.+|++.
T Consensus 161 ~e~~~~v~~~---------------------------------------------------------~~~~~~~~~~~~g 183 (712)
T KOG2237|consen 161 KELFTVVIDV---------------------------------------------------------KFSGPVWTHDGKG 183 (712)
T ss_pred Cccceeeeee---------------------------------------------------------ccCCceeeccCCc
Confidence 8777666666 5678899999999
Q ss_pred EEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEE
Q 003878 249 FFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKV 328 (789)
Q Consensus 249 i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i 328 (789)
++|.+... ..+.++..++.+..+++++||+|.+|+.+++|++++++++++.++.....+.+|.+++.+.+..++..+.+
T Consensus 184 ~~y~~w~~-~dg~~l~~~t~~~~~r~hkvy~h~~Gtdq~~Dvl~~~e~d~~~~vf~~~~kD~~~~~i~si~~t~s~~~~v 262 (712)
T KOG2237|consen 184 VSYLAWAK-QDGEDLLYGTEDENNRPHKVYYHTLGTDQSEDVLLYEEKDEPKHVFISETKDSGFYTINSISETCSPVNKV 262 (712)
T ss_pred eEeeeecc-cCCceeeeeeeccccCcceEEEEecccCCCcceEEEecCCCCeEEEEEEEecCceEEEEEeeccCCccceE
Confidence 98888765 22334445666678899999999999999999999999998888877777777777776666666667899
Q ss_pred EEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCC--CCeEEeccCCCC
Q 003878 329 YYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP--NDWFEVIPEAER 406 (789)
Q Consensus 329 ~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~--~~~~~l~~~~~~ 406 (789)
|.+|+.....++..+ ..++.+.+.-+...+.++..++..+++++|.+++++.+.++++..+ ..|+.++++.+.
T Consensus 263 f~~d~~~~~~gl~~~-----~~~~v~~v~~f~eh~~fi~~~~t~~~~~tn~~~p~y~l~r~~~~~~~~~~W~~v~~e~~~ 337 (712)
T KOG2237|consen 263 FLCDLSSPSDGLELL-----ILPRVKGVDCFVEHYDFITNEGTEFYFLTNKDAPNYYLLRIDVKEPEESKWETVFAEHEK 337 (712)
T ss_pred EEEecccccCCcchh-----eeeccchhhhhhhhhhheeccCcceeeeccCCCCceeEEeeeccCccccccceeecccch
Confidence 999987743332110 1123333333444445677788999999999999999999999877 369999998888
Q ss_pred ceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 407 DVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 407 ~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
..+..+...+++.+++.+..+....+.+.++.+|...+.+++|.+++..+....+++.++|.++|+.+|+.||.||+..+
T Consensus 338 ~vl~~~~~~~~~~ll~~~~~~l~~i~q~~~~l~g~~~~~fpLpv~sv~~~~g~~~~~~~~f~~sS~l~P~~iy~yDl~~~ 417 (712)
T KOG2237|consen 338 DVLEDVDMVNDNLLLVCYMSDLKHILQVRDLLDGSLLRSFPLPVGSVSGTSGDFKSSTIRFQFSSFLTPGSIYDYDLANG 417 (712)
T ss_pred hhhhhhhhhcCceEEEEEecCchhhccccccccCceeeeecCCCCcccccccCCCCceEEEEEeccCCCCeEEEeeccCC
Confidence 88888888886778888877766556666666677778899998888777778888999999999999999999999998
Q ss_pred CceEEEeeeccC--CCCCCCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHH
Q 003878 487 TPEMKIFRETII--PGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILM 564 (789)
Q Consensus 487 ~~~~~~l~~~~~--~~~~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l 564 (789)
+.+..++.+... ++|+.+.|++++++++|+|| ++|||+|++.++.+.+++.|++||+||||+.+..|.|+.++..++
T Consensus 418 ~~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDG-t~VPM~Iv~kk~~k~dg~~P~LLygYGay~isl~p~f~~srl~ll 496 (712)
T KOG2237|consen 418 KPEPSVFREITVVLPGFDASDYVVERIEVSSKDG-TKVPMFIVYKKDIKLDGSKPLLLYGYGAYGISLDPSFRASRLSLL 496 (712)
T ss_pred CCCCcceeeeccccCcccccceEEEEEEEecCCC-CccceEEEEechhhhcCCCceEEEEecccceeeccccccceeEEE
Confidence 655566665444 78999999999999999999 999999999998888899999999999999999999999999999
Q ss_pred HcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcee
Q 003878 565 RHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFG 644 (789)
Q Consensus 565 ~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~ 644 (789)
+ +|++.+.+|+|||||+|.+||+.|+...|+|+|+||++|++||+++||+.|+|+++.|+|+||+|++++++++||||+
T Consensus 497 d-~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~ 575 (712)
T KOG2237|consen 497 D-RGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFG 575 (712)
T ss_pred e-cceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhh
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHH
Q 003878 645 CALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 724 (789)
Q Consensus 645 a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~ 724 (789)
|+|++|||+||++++.+++++.|.++||+..+|+.++++.+++||+++++++.+ ..||.|||+++.+|+||++++
T Consensus 576 avia~VpfmDvL~t~~~tilplt~sd~ee~g~p~~~~~~~~i~~y~pv~~i~~q-----~~YPS~lvtta~hD~RV~~~~ 650 (712)
T KOG2237|consen 576 AVIAKVPFMDVLNTHKDTILPLTTSDYEEWGNPEDFEDLIKISPYSPVDNIKKQ-----VQYPSMLVTTADHDDRVGPLE 650 (712)
T ss_pred hhhhcCcceehhhhhccCccccchhhhcccCChhhhhhhheecccCccCCCchh-----ccCcceEEeeccCCCcccccc
Confidence 999999999999999999999998888777666666677777666666655332 359999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCCCC
Q 003878 725 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASWV 788 (789)
Q Consensus 725 ~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 788 (789)
+.||+++||...+.++ .+.+|+.+++.+++||+...++.+++++.+..++||.+.++..|.
T Consensus 651 ~~K~vAklre~~~~~~---~q~~pvll~i~~~agH~~~~~~~k~~~E~a~~yaFl~K~~~~~~~ 711 (712)
T KOG2237|consen 651 SLKWVAKLREATCDSL---KQTNPVLLRIETKAGHGAEKPRFKQIEEAAFRYAFLAKMLNSDWI 711 (712)
T ss_pred hHHHHHHHHHHhhcch---hcCCCEEEEEecCCccccCCchHHHHHHHHHHHHHHHHHhcCccC
Confidence 9999999999865542 246899999999999999999999999999999999999998875
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-99 Score=882.90 Aligned_cols=667 Identities=24% Similarity=0.425 Sum_probs=568.7
Q ss_pred CCCccccCCceeeeecCccccCCCCcccCC--CCHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHHhhhcCCCCCCceE
Q 003878 12 QYPVARRDESVVDDYHGVKIVDPYRWLEDP--DAEEVKDFVQKQVELTDSVLKNC-DVRDKLREKITKLFDSPRYDAPFK 88 (789)
Q Consensus 12 ~~p~~~~~~~~~~~~~g~~~~D~y~wled~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 88 (789)
.||.|+++|+ ++++||+++.|||+||||. ++|+|++||++||+||+++|+++ +++++|.++|++++..+++++|.+
T Consensus 1 ~pP~a~~~~~-~~~~hg~~~~DpY~WLed~~r~~~~v~~~l~~en~~t~~~l~~~~~~~~~l~~~~~~~~~~~~~~~p~~ 79 (686)
T PRK10115 1 MLPKAARIPH-AMTLHGDTRIDNYYWLRDDTRSQPEVLDYLHQENSYGHRVMASQQALQDRILKEIIDRIPQREVSAPYI 79 (686)
T ss_pred CcCCCCCCCe-eEEeCCCEeccCchHhhCCCCCCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhcccccCCCCEE
Confidence 3788999994 8999999999999999996 59999999999999999999996 999999999999999999999999
Q ss_pred eCCEEEEEEEcCCCCeeEEEEecCCC----CCceEEeccCCCCCC-CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEE
Q 003878 89 RGNKYFYFHNTGLQPQSVLYVQDSLD----AKAKVLLDPNTLSDD-GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLM 163 (789)
Q Consensus 89 ~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~d~~~~~~~-~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~ 163 (789)
+|+++||+++..+. +++||+|...+ +++++|||+|+++++ +++.++.+.+||||++|||+.+.+|+|+++|+++
T Consensus 80 ~g~~~y~~~~~~g~-~~~~~~r~~~~~~~~~~~~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~ 158 (686)
T PRK10115 80 KNGYRYRHIYEPGC-EYAIYQRQSAFSEEWDEWETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRRQYGIRFR 158 (686)
T ss_pred ECCEEEEEEEcCCC-ccEEEEEecCCCCCCCCCEEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcEEEEEEEE
Confidence 99998888877666 57799887642 457999999999655 6799999999999999999999999999999999
Q ss_pred EcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEE
Q 003878 164 RIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWT 243 (789)
Q Consensus 164 dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~ws 243 (789)
|+.||+.+++.+.++ + .+++|+
T Consensus 159 d~~tg~~l~~~i~~~---------------------------------------------------------~-~~~~w~ 180 (686)
T PRK10115 159 NLETGNWYPELLDNV---------------------------------------------------------E-PSFVWA 180 (686)
T ss_pred ECCCCCCCCccccCc---------------------------------------------------------c-eEEEEe
Confidence 999998777777766 3 569999
Q ss_pred eCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCC
Q 003878 244 HDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCD 323 (789)
Q Consensus 244 pDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 323 (789)
+||++|+|++.+. ...++.+||+|++|++++++++|+++.++..+ .....|.|++++++.+....
T Consensus 181 ~D~~~~~y~~~~~-------------~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~- 245 (686)
T PRK10115 181 NDSWTFYYVRKHP-------------VTLLPYQVWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASAT- 245 (686)
T ss_pred eCCCEEEEEEecC-------------CCCCCCEEEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCc-
Confidence 9999999998742 12477899999999998899999998765444 35566779999998776654
Q ss_pred CceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccC
Q 003878 324 PVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPE 403 (789)
Q Consensus 324 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~ 403 (789)
.+++++++.+... ..++..+....+..+.. .+.++.||+.+|.++++++|+.+++.+...|++++++
T Consensus 246 -~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~-~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~ 312 (686)
T PRK10115 246 -TSEVLLLDAELAD-----------AEPFVFLPRRKDHEYSL-DHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPP 312 (686)
T ss_pred -cccEEEEECcCCC-----------CCceEEEECCCCCEEEE-EeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECC
Confidence 4678887754311 11122222333444543 3557899999999899999999999854459999999
Q ss_pred CCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEee--cccCCcEEEEEEcCCCCCcEEEE
Q 003878 404 AERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAIS--ARREDSVVFISFTSFLIPGIVYQ 480 (789)
Q Consensus 404 ~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s--~s~d~~~l~~~~ss~~~P~~ly~ 480 (789)
.++..++++.++. +++++..++++.++|+++++++++ ...|.++ ...+..++ .+++++.++++++|+++|+++|.
T Consensus 313 ~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~ 390 (686)
T PRK10115 313 RENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTRE-VIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFE 390 (686)
T ss_pred CCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCc-eEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEE
Confidence 7667899999997 899999999999999999987444 3566643 22233333 34677889999999999999999
Q ss_pred EECCCCCceEEEeeeccCCCCCCCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHH
Q 003878 481 CNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSR 560 (789)
Q Consensus 481 ~dl~tg~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~ 560 (789)
+|+.+++ .++++....+.+++..+.++++++++.|| ++||+++++|++...+++.|+||++||||+.+..+.|+..+
T Consensus 391 ~d~~~~~--~~~l~~~~~~~~~~~~~~~e~v~~~s~DG-~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~~~~ 467 (686)
T PRK10115 391 LDMDTGE--RRVLKQTEVPGFDAANYRSEHLWITARDG-VEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSR 467 (686)
T ss_pred EECCCCc--EEEEEecCCCCcCccccEEEEEEEECCCC-CEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCccHHH
Confidence 9999884 77788766666888888999999999999 99999999988755567889999999999999999999988
Q ss_pred HHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC
Q 003878 561 TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRP 640 (789)
Q Consensus 561 ~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p 640 (789)
+.|++ +||+|+++|+|||||||++|+++++..+|.++|+|+++|+++|+++|++||+||+|+|+|+||+|++++++++|
T Consensus 468 ~~l~~-rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~P 546 (686)
T PRK10115 468 LSLLD-RGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRP 546 (686)
T ss_pred HHHHH-CCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcCh
Confidence 87777 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEecCCccccccccc---ccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCC
Q 003878 641 DLFGCALAHVGVMDMLRYHK---FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 717 (789)
Q Consensus 641 d~f~a~v~~~p~~d~~~~~~---~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D 717 (789)
|+|+|+|+.+|++||++++. +.....|..|||+|.+++.+++|++|||++|++++ .+|++||+||.+|
T Consensus 547 dlf~A~v~~vp~~D~~~~~~~~~~p~~~~~~~e~G~p~~~~~~~~l~~~SP~~~v~~~---------~~P~lLi~~g~~D 617 (686)
T PRK10115 547 ELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQ---------AYPHLLVTTGLHD 617 (686)
T ss_pred hheeEEEecCCchhHhhhcccCCCCCChhHHHHhCCCCCHHHHHHHHHcCchhccCcc---------CCCceeEEecCCC
Confidence 99999999999999998863 23344567899999989899999999999999986 5888999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCCCC
Q 003878 718 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASWV 788 (789)
Q Consensus 718 ~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 788 (789)
+|||++|+.||+++||+. .....++.|++.+++||+....+.+.+++.|.+++|+..++++++.
T Consensus 618 ~RV~~~~~~k~~a~Lr~~-------~~~~~~vl~~~~~~~GHg~~~~r~~~~~~~A~~~aFl~~~~~~~~~ 681 (686)
T PRK10115 618 SQVQYWEPAKWVAKLREL-------KTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLIALAQGTLP 681 (686)
T ss_pred CCcCchHHHHHHHHHHhc-------CCCCceEEEEecCCCCCCCCcCHHHHHHHHHHHHHHHHHHhCCcCC
Confidence 999999999999999987 2223447777779999998888888899999999999999998753
|
|
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-94 Score=770.95 Aligned_cols=635 Identities=37% Similarity=0.625 Sum_probs=529.4
Q ss_pred ccCCCCcccCCCCHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHhhhcCCCCCCceEeCCEEEEEEEcCCCCeeEEEEe
Q 003878 31 IVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQ 110 (789)
Q Consensus 31 ~~D~y~wled~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 110 (789)
..|||+||||++++|+++|+++||+.|..+|...+.+..+.+++.++++.++++.|+.+|+++|+++++...++. +|+|
T Consensus 2 ~~DPy~wlEd~~~~eal~wv~~~N~~t~~~L~~~~~~a~~~~~~~~l~d~~~~~~~~~~~~~~ynFw~D~~~p~G-lwr~ 80 (648)
T COG1505 2 VPDPYRWLEDLDSAEALKWVEAQNAKTREFLGEDSARAASDKRLLELWDYEDIPIPFERGGRYYNFWQDALYPRG-LYRR 80 (648)
T ss_pred CCCcchhhhcCCcHHHHHHHHhhhhHHHHHhhcchhhHHHHHHHHHHhhccccCcceeccceeEEeeccccCcce-eEEe
Confidence 579999999999999999999999999999999999999999999999999999999999999999999888874 8998
Q ss_pred cCC------CCCceEEeccCCCCCC--CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceeccccccccccc
Q 003878 111 DSL------DAKAKVLLDPNTLSDD--GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCF 182 (789)
Q Consensus 111 ~~~------~~~~~~l~d~~~~~~~--~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~ 182 (789)
+.+ +++|+||+|+++|+++ .++.+.+++.+||+++++|+++.+|+|+..++++|++||..+.+. +.
T Consensus 81 ttl~syrs~~p~WevLiD~d~Ls~~~g~~v~~~Gas~~~~~~R~l~s~S~gG~D~~~~re~Dlet~~fv~~~--~f---- 154 (648)
T COG1505 81 TTLETYRSAKPEWEVLIDVDALSADLGDKVALGGASVLPDGTRLLYSLSIGGSDAGITREFDLETGEFVEEE--GF---- 154 (648)
T ss_pred ecceeecccCCCceeecCHHHHhhhcCCcEEEccceeCCCCCEEEEEecCCCCcceEEEEEEecccccccCC--Cc----
Confidence 754 4779999999999977 478999999999999999999999999999999999999877653 22
Q ss_pred ccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCC
Q 003878 183 SHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKD 262 (789)
Q Consensus 183 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~ 262 (789)
.+..+.|..++ +++|++...++
T Consensus 155 -----------------------------------------------------~~~~~~wld~d-~~~~~~~~~~~---- 176 (648)
T COG1505 155 -----------------------------------------------------KFPGISWLDDD-GVFVSRYWRPK---- 176 (648)
T ss_pred -----------------------------------------------------cccceEEecCC-CEEEecccCCc----
Confidence 23458999877 88888776543
Q ss_pred CCCCccccCCcccE---EEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCC
Q 003878 263 MDAGTETDSNLYHE---FYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEG 339 (789)
Q Consensus 263 ~~~~~~~~~~~~~~---i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~ 339 (789)
+.|+++++.. ++++++.++++.++.++....-+.+...+.++.|+++++....-.......++ +++-+. .
T Consensus 177 ----e~T~sGy~~~~~~~krg~~f~~~~~dv~V~a~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-l~~p~~-~- 249 (648)
T COG1505 177 ----EKTPSGYPRVVKRLKRGKLFEGQEGDVMVNARGDQDPWGFRLVLSEDGDFFMLSLWLGTSGKGLIK-LGLPDK-V- 249 (648)
T ss_pred ----ccCccCCchHhhhhhhcccccCCCCceEEecccccCCccceEEEeeccchhhheeeEeccCCCcee-ccCCcc-c-
Confidence 3345666664 45556667888888887766544445556666677666544433222223333 222110 0
Q ss_pred cccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCE
Q 003878 340 LEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ 419 (789)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~ 419 (789)
...+..++-.....+.....+...+++.+....+ .+.....++|.. ...++.+.+++ ++
T Consensus 250 ---------~~~~~~l~~~~r~dw~~~~~~~g~l~l~~~e~~~----------~g~~~a~~~P~~-~~~le~v~tt~-~~ 308 (648)
T COG1505 250 ---------GYEWGKLVNTLRADWTFADVDYGLLYLLTDEDLE----------LGKVIAEFIPEE-EQSLEQVVTTK-DK 308 (648)
T ss_pred ---------cceeeeeeEeecccccccCcccceEEEEehhccc----------cCceeEEecCCc-ccceeeeEEEc-Ce
Confidence 0011112211111222212222334443333222 222233455554 58899999998 89
Q ss_pred EEEEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeeeccC
Q 003878 420 MIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETII 498 (789)
Q Consensus 420 lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~~~~ 498 (789)
+++...+|..++|.++++. |...+.|+++ .+.+...+.+.+++.+++.+++|++|+++|++++.+++ +++++.+..
T Consensus 309 ~va~~l~nv~~~l~v~~~~-g~~~~~v~l~~~ga~~~~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~e--Le~ik~~p~ 385 (648)
T COG1505 309 LVAGTLDNVSGRLEVYDLK-GERIEEVELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYRLDLFGGE--LEVIREQPV 385 (648)
T ss_pred EEeeeehhccceEEEeccC-ceEeeecccCCccceeeccCCCCCcEEEEEeecccCCCceEEEecCCce--ehhhhhccC
Confidence 9999999999999999987 6766888887 67776567778899999999999999999999999884 777776543
Q ss_pred CCCCCCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecC
Q 003878 499 PGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRG 578 (789)
Q Consensus 499 ~~~~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG 578 (789)
.|+++++.+++.+.+|.|| ++||++|++ |+.+.+ +.|++||+||||+.+..|.|++.+..||+ +|++++++|+||
T Consensus 386 -~FDa~~~~veQ~~atSkDG-T~IPYFiv~-K~~~~d-~~pTll~aYGGF~vsltP~fs~~~~~WLe-rGg~~v~ANIRG 460 (648)
T COG1505 386 -QFDADNYEVEQFFATSKDG-TRIPYFIVR-KGAKKD-ENPTLLYAYGGFNISLTPRFSGSRKLWLE-RGGVFVLANIRG 460 (648)
T ss_pred -CcCccCceEEEEEEEcCCC-ccccEEEEe-cCCcCC-CCceEEEeccccccccCCccchhhHHHHh-cCCeEEEEeccc
Confidence 6999999999999999999 999999999 887777 99999999999999999999999878887 999999999999
Q ss_pred CCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc
Q 003878 579 GGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY 658 (789)
Q Consensus 579 ~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~ 658 (789)
|||||++||+++.+.++++.|+||+|+++.|+++|++.|++|+|+|+|+||+|++++++|+||+|.|+|+.+|++||++|
T Consensus 461 GGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMlRY 540 (648)
T COG1505 461 GGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRY 540 (648)
T ss_pred CCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhcc
Q 003878 659 HKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCT 738 (789)
Q Consensus 659 ~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~ 738 (789)
+.+++|..|+.|||+|++|+.+.+|.+||||+|++.. +.|||+||++|.+|+||+|.|++||+++|+.+
T Consensus 541 h~l~aG~sW~~EYG~Pd~P~d~~~l~~YSPy~nl~~g--------~kYP~~LITTs~~DDRVHPaHarKfaa~L~e~--- 609 (648)
T COG1505 541 HLLTAGSSWIAEYGNPDDPEDRAFLLAYSPYHNLKPG--------QKYPPTLITTSLHDDRVHPAHARKFAAKLQEV--- 609 (648)
T ss_pred cccccchhhHhhcCCCCCHHHHHHHHhcCchhcCCcc--------ccCCCeEEEcccccccccchHHHHHHHHHHhc---
Confidence 9999999999999999999999999999999999996 57999999999999999999999999999998
Q ss_pred CCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 739 SLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 739 ~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
+.|+.+++..++||+...+..+.+++.+..++||.+.|+
T Consensus 610 -------~~pv~~~e~t~gGH~g~~~~~~~A~~~a~~~afl~r~L~ 648 (648)
T COG1505 610 -------GAPVLLREETKGGHGGAAPTAEIARELADLLAFLLRTLG 648 (648)
T ss_pred -------CCceEEEeecCCcccCCCChHHHHHHHHHHHHHHHHhhC
Confidence 899999999999999999988889999999999999875
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=477.93 Aligned_cols=404 Identities=34% Similarity=0.583 Sum_probs=324.1
Q ss_pred CCccccCCceeeeecCccccCCCCcccCCCCHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHHhhhcCCCCCCceEeCC
Q 003878 13 YPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNC-DVRDKLREKITKLFDSPRYDAPFKRGN 91 (789)
Q Consensus 13 ~p~~~~~~~~~~~~~g~~~~D~y~wled~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~ 91 (789)
||++++++ +++++||+++.|||+||||.++|+|++||++||+||+++|+++ +++++|+++|++++..++.++|.+.|+
T Consensus 1 P~~~~~~~-~~~~~hg~~~~DpY~WLed~~~~~v~~~~~~en~~t~~~l~~~~~~~~~l~~~~~~~~~~~~~~~p~~~g~ 79 (414)
T PF02897_consen 1 PPTARKPP-VVETLHGVTITDPYRWLEDDDSPEVLAWLKAENAYTEAYLAQLKPLREKLYEELKARINEDRESVPVRRGG 79 (414)
T ss_dssp S-TTS-TT-SEEEETTEEEE-TTGGGGSTTSHHHHHHHHHHHHHHHHHHHTSHTCHHHHHHHHHHHCSSSEE---EEETT
T ss_pred CCCCCCCC-eeeecCCCEeecCchhhcCCCCHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHhhccCCCccccEEECC
Confidence 45566666 5899999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred EEEEEEEcCCCCeeEEEEecCC--CCC-ceEEeccCCCCCCC-cEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCC
Q 003878 92 KYFYFHNTGLQPQSVLYVQDSL--DAK-AKVLLDPNTLSDDG-TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED 167 (789)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~l~d~~~~~~~~-~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~t 167 (789)
++||+++.+++++.++|||... +++ +++|||+|+|++++ +..++.+++||||++|||+++.+|+|+++|+++|++|
T Consensus 80 ~~y~~~~~~~~~~~~~~r~~~~~~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t 159 (414)
T PF02897_consen 80 YYYYSRNQGGKNYPVLYRRKTDEEDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET 159 (414)
T ss_dssp EEEEEEE-SS-SS-EEEEEETTS-TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT
T ss_pred eEEEEEEcCCCceEEEEEEecccCCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCC
Confidence 9999999999999999999876 455 59999999999987 7778899999999999999999999999999999999
Q ss_pred CceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCc
Q 003878 168 QIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSK 247 (789)
Q Consensus 168 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~ 247 (789)
|+.+.+.+.++ +..+++|++||+
T Consensus 160 g~~l~d~i~~~---------------------------------------------------------~~~~~~W~~d~~ 182 (414)
T PF02897_consen 160 GKFLPDGIENP---------------------------------------------------------KFSSVSWSDDGK 182 (414)
T ss_dssp TEEEEEEEEEE---------------------------------------------------------ESEEEEECTTSS
T ss_pred CcCcCCccccc---------------------------------------------------------ccceEEEeCCCC
Confidence 99888777765 234599999999
Q ss_pred EEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceE
Q 003878 248 GFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNK 327 (789)
Q Consensus 248 ~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~ 327 (789)
.|+|++.+..... ++++.+.+|++|++|++..++.+||++++++.++.++.+|+||++|++.+..+.. .++
T Consensus 183 ~~~y~~~~~~~~~--------~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~ 253 (414)
T PF02897_consen 183 GFFYTRFDEDQRT--------SDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESE 253 (414)
T ss_dssp EEEEEECSTTTSS---------CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEE
T ss_pred EEEEEEeCccccc--------ccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc-CCe
Confidence 9999998763210 0356799999999999999999999998876646689999999999999987764 599
Q ss_pred EEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC--CeE-EeccCC
Q 003878 328 VYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWF-EVIPEA 404 (789)
Q Consensus 328 i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~--~~~-~l~~~~ 404 (789)
+|++++.++.. ....+..+..........+.+.|+.||++||.++++++|++++++.+. .|. .++++.
T Consensus 254 v~~~d~~~~~~---------~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~ 324 (414)
T PF02897_consen 254 VYLLDLDDGGS---------PDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED 324 (414)
T ss_dssp EEEEECCCTTT---------SS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S
T ss_pred EEEEeccccCC---------CcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC
Confidence 99999987410 022345555544444444566699999999999999999999999876 355 777777
Q ss_pred CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEEC
Q 003878 405 ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 405 ~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl 483 (789)
+...+.++..++ ++|++..+.++.++|.++++..+.....+.++ .+.+.+++.+++++.++|+++|+++|+++|.||+
T Consensus 325 ~~~~l~~~~~~~-~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~ 403 (414)
T PF02897_consen 325 EDVSLEDVSLFK-DYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDL 403 (414)
T ss_dssp SSEEEEEEEEET-TEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEET
T ss_pred CceeEEEEEEEC-CEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 667899999998 89999999999999999999844554677776 6777788888999999999999999999999999
Q ss_pred CCCCceEEEeee
Q 003878 484 KTETPEMKIFRE 495 (789)
Q Consensus 484 ~tg~~~~~~l~~ 495 (789)
.+++ .+++++
T Consensus 404 ~t~~--~~~~k~ 413 (414)
T PF02897_consen 404 ATGE--LTLLKQ 413 (414)
T ss_dssp TTTC--EEEEEE
T ss_pred CCCC--EEEEEe
Confidence 9995 777764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-43 Score=405.89 Aligned_cols=386 Identities=18% Similarity=0.213 Sum_probs=290.6
Q ss_pred EEEecCCCEEEEEECCCC----CCceEEEEECCCCCCeEEeccCCC----CceeeeEEEecCCEEEEEEEe-CCeEEEEE
Q 003878 364 EVIANDDTVFTFLTNKDA----PKYKIIRVDLKEPNDWFEVIPEAE----RDVLESATAVNLNQMIVSYLS-DVKYVLQI 434 (789)
Q Consensus 364 ~~~s~dG~~l~~~tn~~~----~~~~L~~~dl~~~~~~~~l~~~~~----~~~i~~v~~~~~~~lv~~~~~-~g~~~L~~ 434 (789)
..+.++|+.+++..+... ....++.++.+.+. ........+ ...+... .+++.+++.... .+...+..
T Consensus 221 ~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~l~~ 297 (620)
T COG1506 221 LAFDADGKSIALLGTESDRGLAEGDFILLLDGELGE-VDGDLSSGDDTRGAWAVEGG--LDGDGLLFIATDGGGSSPLFR 297 (620)
T ss_pred eeeCCCCCeeEEeccCCccCccccceEEEEeccccc-cceeeccCCcccCcHHhccc--cCCCcEEEEEecCCCceEEEE
Confidence 447889998888877532 23455555523222 111111111 0011111 233566666665 45445555
Q ss_pred EECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeeeccCCCCCCC-CCcEEEEEE
Q 003878 435 RDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRS-EFHVHQVFV 513 (789)
Q Consensus 435 ~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~~~~~~~~~~-~~~~~~~~~ 513 (789)
.+...+.. ..+..+.+.+..++. +++.+++.++++..|+++|.++. .. ...+.......+... ....|.+++
T Consensus 298 ~~~~~~~~-~~~~~~~~~v~~f~~--~~~~~~~~~s~~~~p~~i~~~~~-~~---~~~~~~~~~~~~~~~~~~~~e~~~~ 370 (620)
T COG1506 298 VDDLGGGV-EGLSGDDGGVPGFDV--DGRKLALAYSSPTEPPEIYLYDR-GE---EAKLTSSNNSGLKKVKLAEPEPVTY 370 (620)
T ss_pred EeccCCce-eeecCCCceEEEEee--CCCEEEEEecCCCCccceEEEcC-CC---ceEEeecccccccccccCCceEEEE
Confidence 55432322 334444466655554 88999999999999999999997 22 222222222222222 346789999
Q ss_pred ecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccccc
Q 003878 514 PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 593 (789)
Q Consensus 514 ~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~ 593 (789)
++.|| .+|+++++.|.+..+.+++|+||++||||.......|......++. +||+|+.+|+||+++||++|.++....
T Consensus 371 ~~~dG-~~i~~~l~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~-~G~~V~~~n~RGS~GyG~~F~~~~~~~ 448 (620)
T COG1506 371 KSNDG-ETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLAS-AGYAVLAPNYRGSTGYGREFADAIRGD 448 (620)
T ss_pred EcCCC-CEEEEEEecCCCCCCCCCCCEEEEeCCCCccccccccchhhHHHhc-CCeEEEEeCCCCCCccHHHHHHhhhhc
Confidence 99999 9999999999998877889999999999988888888876655554 999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccch--hhc
Q 003878 594 KKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWV--SDF 671 (789)
Q Consensus 594 ~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~--~e~ 671 (789)
++...++|+++++++|.+.+++|++||+|+|+|+||+|+++++++.| +|+|+++..+.++.+.+........+. .+.
T Consensus 449 ~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (620)
T COG1506 449 WGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEEN 527 (620)
T ss_pred cCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCHHHh
Confidence 99999999999999999999999999999999999999999999987 899999999988877665432221111 111
Q ss_pred -CCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEE
Q 003878 672 -GCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPII 750 (789)
Q Consensus 672 -g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 750 (789)
+.+.. ..+.+.+.||+.+++++ .+|+|++||++|.|||.+|+++|+++|+.. |++++
T Consensus 528 ~~~~~~--~~~~~~~~sp~~~~~~i----------~~P~LliHG~~D~~v~~~q~~~~~~aL~~~----------g~~~~ 585 (620)
T COG1506 528 GGGPPE--DREKYEDRSPIFYADNI----------KTPLLLIHGEEDDRVPIEQAEQLVDALKRK----------GKPVE 585 (620)
T ss_pred CCCccc--ChHHHHhcChhhhhccc----------CCCEEEEeecCCccCChHHHHHHHHHHHHc----------CceEE
Confidence 22221 23457899999999997 899999999999999999999999999998 99999
Q ss_pred EEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 751 GRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 751 l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
++++|++||++..+.+ ..+.+..+++|+.++++.
T Consensus 586 ~~~~p~e~H~~~~~~~-~~~~~~~~~~~~~~~~~~ 619 (620)
T COG1506 586 LVVFPDEGHGFSRPEN-RVKVLKEILDWFKRHLKQ 619 (620)
T ss_pred EEEeCCCCcCCCCchh-HHHHHHHHHHHHHHHhcC
Confidence 9999999999998666 478999999999999975
|
|
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=284.99 Aligned_cols=333 Identities=19% Similarity=0.199 Sum_probs=257.8
Q ss_pred EEEEEEEeCCe--EEEEEEECC-CCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeee
Q 003878 419 QMIVSYLSDVK--YVLQIRDLK-NGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRE 495 (789)
Q Consensus 419 ~lv~~~~~~g~--~~L~~~dl~-tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~ 495 (789)
-+|+....++. .+||+..++ .|+. .+++.+..+. ...++.+=+.++..++|-..|+.+..|.+.+++. ..+.++
T Consensus 517 LVYf~gt~d~PlE~hLyvvsye~~g~~-~rlt~~g~sh-~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~-~~l~~q 593 (867)
T KOG2281|consen 517 LVYFVGTKDTPLEHHLYVVSYENPGEI-ARLTEPGYSH-SCELDQQCDHFVSYYSSVGSPPCVSLYSLSWPEN-DPLPKQ 593 (867)
T ss_pred EEEEEccCCCCceeeEEEEEEecCCce-eeccCCCccc-chhhhhhhhhHhhhhhcCCCCceEEEEeccCCcc-Ccccch
Confidence 35667777764 489998887 5665 6676542221 2234444455666678889999999999877642 111111
Q ss_pred cc-----CC-CCCCCCCcE-EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCCH---HHHHHH
Q 003878 496 TI-----IP-GFDRSEFHV-HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSV---SRTILM 564 (789)
Q Consensus 496 ~~-----~~-~~~~~~~~~-~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~~---~~~~~l 564 (789)
.. .. .-.+.+|+. |.+.+.++.| ..+.+.++.|.++++.+++|+++++|||++...- ..|.. .+...|
T Consensus 594 ~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg-~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnnsfkgi~ylR~~~L 672 (867)
T KOG2281|consen 594 VSFWAILVSGAPPPPDYVPPEIFSFQSKTG-LTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNSFKGIQYLRFCRL 672 (867)
T ss_pred hhHHHHHHhcCCCCCccCChhheeeecCCC-cEEEEEEEccccCCCCCCCceEEEEcCCCceEEeeccccceehhhhhhh
Confidence 10 00 112334543 6688899899 9999999999999999999999999999988653 34432 345667
Q ss_pred HcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhCCCce
Q 003878 565 RHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACINQRPDLF 643 (789)
Q Consensus 565 ~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f 643 (789)
+.+||+|+++|-||+--.|-.|-...+...++...+|.+.++++|+++ |++|.+||+|.|+|+||+|++++++++|+.|
T Consensus 673 aslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~If 752 (867)
T KOG2281|consen 673 ASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIF 752 (867)
T ss_pred hhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcCccee
Confidence 779999999999999999999999888899999999999999999999 5999999999999999999999999999999
Q ss_pred eEEEecCCcccccccccccCCccchhhc-CCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCC-eEEEEecCCCCCCC
Q 003878 644 GCALAHVGVMDMLRYHKFTIGHAWVSDF-GCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYP-STLLLTADHDDRVV 721 (789)
Q Consensus 644 ~a~v~~~p~~d~~~~~~~~~~~~~~~e~-g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~p-p~Li~~g~~D~~V~ 721 (789)
+++|+.+|++++..+.. .+.+.| |.|+..+.- +.+-|-..+|.+. +..| .+|++||.-|..|+
T Consensus 753 rvAIAGapVT~W~~YDT-----gYTERYMg~P~~nE~g--Y~agSV~~~Vekl--------pdepnRLlLvHGliDENVH 817 (867)
T KOG2281|consen 753 RVAIAGAPVTDWRLYDT-----GYTERYMGYPDNNEHG--YGAGSVAGHVEKL--------PDEPNRLLLVHGLIDENVH 817 (867)
T ss_pred eEEeccCcceeeeeecc-----cchhhhcCCCccchhc--ccchhHHHHHhhC--------CCCCceEEEEecccccchh
Confidence 99999999999987764 233445 567443321 2455666777765 2334 49999999999999
Q ss_pred cHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 722 PLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 722 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
+.|...++.+|-++ |+|.+|.+||++-|+...+... +..-++++.|+.+
T Consensus 818 F~Hts~Lvs~lvka----------gKpyeL~IfP~ERHsiR~~es~-~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 818 FAHTSRLVSALVKA----------GKPYELQIFPNERHSIRNPESG-IYYEARLLHFLQE 866 (867)
T ss_pred hhhHHHHHHHHHhC----------CCceEEEEccccccccCCCccc-hhHHHHHHHHHhh
Confidence 99999999999998 9999999999999999877664 5666788888864
|
|
| >PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=277.71 Aligned_cols=209 Identities=32% Similarity=0.472 Sum_probs=174.3
Q ss_pred CCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHH
Q 003878 554 PSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVG 633 (789)
Q Consensus 554 ~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~ 633 (789)
|+|+. ..++|+++||+|+.+|+||+++||.+|+..+....+...++|+++++++|++++.+|++||+|+|+|+||++++
T Consensus 1 ~~f~~-~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~ 79 (213)
T PF00326_consen 1 PSFNW-NAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLAL 79 (213)
T ss_dssp ---SH-HHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHH
T ss_pred CeeeH-HHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccc
Confidence 45673 46788779999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCceeEEEecCCccccccccccc--CCccchhhcCCC-CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEE
Q 003878 634 ACINQRPDLFGCALAHVGVMDMLRYHKFT--IGHAWVSDFGCS-EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTL 710 (789)
Q Consensus 634 ~~~~~~pd~f~a~v~~~p~~d~~~~~~~~--~~~~~~~e~g~p-~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~L 710 (789)
++++++|++|+|+|+.+|++|+..+...+ ....+..++|.+ ..++.+..+..+++..++. . .+|+|
T Consensus 80 ~~~~~~~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~----------~~P~l 148 (213)
T PF00326_consen 80 LAATQHPDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQ-I----------KPPVL 148 (213)
T ss_dssp HHHHHTCCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCG-G----------GSEEE
T ss_pred hhhcccceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhcccccccccc-C----------CCCEE
Confidence 99999999999999999999998876543 222245667877 4555554444444444332 4 79999
Q ss_pred EEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 711 LLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 711 i~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
++||++|.+||++++.+++++|++. |.+++++++|++||++..+..+ .+...++++||+++|+.
T Consensus 149 i~hG~~D~~Vp~~~s~~~~~~L~~~----------g~~~~~~~~p~~gH~~~~~~~~-~~~~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 149 IIHGENDPRVPPSQSLRLYNALRKA----------GKPVELLIFPGEGHGFGNPENR-RDWYERILDFFDKYLKK 212 (213)
T ss_dssp EEEETTBSSSTTHHHHHHHHHHHHT----------TSSEEEEEETT-SSSTTSHHHH-HHHHHHHHHHHHHHTT-
T ss_pred EEccCCCCccCHHHHHHHHHHHHhc----------CCCEEEEEcCcCCCCCCCchhH-HHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999998 9999999999999999887776 58999999999999985
|
; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B .... |
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.3e-28 Score=283.78 Aligned_cols=387 Identities=17% Similarity=0.221 Sum_probs=269.6
Q ss_pred EecCC-CEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec-CCEEEEEEEeC--CeEEEEEEECCCCc
Q 003878 366 IANDD-TVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSD--VKYVLQIRDLKNGS 441 (789)
Q Consensus 366 ~s~dG-~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~--g~~~L~~~dl~tG~ 441 (789)
++.|+ ..+++....+++-.++.......+.....++... ........+++ .+.+++..... +..+|+.+++.++.
T Consensus 347 ~~~d~~~~~~~~~~~~~~~~hi~~~~~~~~~~~~~lt~g~-w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~~ 425 (755)
T KOG2100|consen 347 FSSDGSSYLKVDSVSDGGYNHIAYLKLSNGSEPRMLTSGN-WEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISLGSGT 425 (755)
T ss_pred EeecCCceeEEEeeccCCEEEEEEEEcCCCCccccccccc-eEEEEeccccCCCceEEEEecCCCCCceEEEEEEccccc
Confidence 45554 4444444444334456666555542123333222 22222222332 36777777775 45588999988655
Q ss_pred eeeecccC----CeeEEEeecccCCcEEEEEEcCCCCCcEEEE-EECCCCCceEEEeeec-cCC-CCCCCCC---cEEEE
Q 003878 442 LLHQLPIE----IGSVNAISARREDSVVFISFTSFLIPGIVYQ-CNLKTETPEMKIFRET-IIP-GFDRSEF---HVHQV 511 (789)
Q Consensus 442 ~~~~l~~~----~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~-~dl~tg~~~~~~l~~~-~~~-~~~~~~~---~~~~~ 511 (789)
. ..++.. ......++++...+.+......+..|...+- .+....+ ....|... .+. .+....+ ..+.+
T Consensus 426 ~-~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~~~-~~~~Le~n~~~~~~~~~~~~p~~~~~~i 503 (755)
T KOG2100|consen 426 V-ESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPKVPDGQLTRHSSKNSK-TIVVLETNEELKKTIENVALPIVEFGKI 503 (755)
T ss_pred c-ccccccCCCCcceEEEEecCCcccEEEEEccCCCCCcceeeccccccce-EEEEeccChhhHHHhhcccCCcceeEEE
Confidence 4 345433 2344456667777777777777777744111 1111111 12222211 111 1111112 22333
Q ss_pred EEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCCHHH-HHHHHcCCeEEEEEeecCCCCCChhHHhc
Q 003878 512 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSR-TILMRHLGAVFCIANIRGGGEYGEEWHKG 589 (789)
Q Consensus 512 ~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~~~~-~~~l~~~G~~v~~~~~RG~g~~g~~~~~~ 589 (789)
.+ || ....+.++.|+++.+.++.|+||..|||+++..- ..|...+ ...+..+|++|+.+|+||+|++|..+..+
T Consensus 504 ~~---~~-~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~ 579 (755)
T KOG2100|consen 504 EI---DG-ITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSA 579 (755)
T ss_pred Ee---cc-EEEEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCCcchhHHHH
Confidence 33 88 9999999999999888899999999999984332 3333333 23466799999999999999999999999
Q ss_pred ccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC-CceeEEEecCCcccccccccccCCccch
Q 003878 590 GALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRP-DLFGCALAHVGVMDMLRYHKFTIGHAWV 668 (789)
Q Consensus 590 ~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p-d~f~a~v~~~p~~d~~~~~~~~~~~~~~ 668 (789)
..+..+....+|.+.+++++++.+++|++||+|+|+|+||++++.++...| +.|+|+++.+|++|+. ++..+ +.
T Consensus 580 ~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~-~yds~----~t 654 (755)
T KOG2100|consen 580 LPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL-YYDST----YT 654 (755)
T ss_pred hhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-eeccc----cc
Confidence 999999999999999999999999999999999999999999999999988 8999999999999998 44322 23
Q ss_pred hhc-CCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCC
Q 003878 669 SDF-GCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTN 747 (789)
Q Consensus 669 ~e~-g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~ 747 (789)
++| |.|..... .+...+|..++... ..|-.|++||+.|++|+++|+.+++++|+.+ |.
T Consensus 655 erymg~p~~~~~--~y~e~~~~~~~~~~---------~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~----------gv 713 (755)
T KOG2100|consen 655 ERYMGLPSENDK--GYEESSVSSPANNI---------KTPKLLLIHGTEDDNVHFQQSAILIKALQNA----------GV 713 (755)
T ss_pred HhhcCCCccccc--hhhhccccchhhhh---------ccCCEEEEEcCCcCCcCHHHHHHHHHHHHHC----------CC
Confidence 455 66633222 14566777777665 3445799999999999999999999999998 99
Q ss_pred cEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCC
Q 003878 748 PIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 748 ~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
++.+.+||+++|++...... ...+..+..||..+++..
T Consensus 714 ~~~~~vypde~H~is~~~~~-~~~~~~~~~~~~~~~~~~ 751 (755)
T KOG2100|consen 714 PFRLLVYPDENHGISYVEVI-SHLYEKLDRFLRDCFGSP 751 (755)
T ss_pred ceEEEEeCCCCcccccccch-HHHHHHHHHHHHHHcCcc
Confidence 99999999999999876654 577888999999777654
|
|
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-19 Score=186.82 Aligned_cols=245 Identities=16% Similarity=0.122 Sum_probs=165.6
Q ss_pred EEEEEEecC-CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEee--cCCCCCC-
Q 003878 508 VHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANI--RGGGEYG- 583 (789)
Q Consensus 508 ~~~~~~~s~-dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~--RG~g~~g- 583 (789)
.+.+.+.+. -+ .++++.++.|++.. .++.|+|+++||..+......+......++++.|++|++||. ||.+..|
T Consensus 13 ~~~~~~~s~~~~-~~~~~~v~~P~~~~-~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~ 90 (275)
T TIGR02821 13 QGFYRHKSETCG-VPMTFGVFLPPQAA-AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGE 90 (275)
T ss_pred EEEEEEeccccC-CceEEEEEcCCCcc-CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCC
Confidence 444555554 46 78889999998743 356899999999876655444333345666667999999997 6665333
Q ss_pred -hhH--------Hhcccc-cC--CcchHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecC
Q 003878 584 -EEW--------HKGGAL-AK--KQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV 650 (789)
Q Consensus 584 -~~~--------~~~~~~-~~--~~~~~~D~~~~~~~L~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~ 650 (789)
..| +..... .. .......+...+..+++. .-+|+++++++|+|+||++++.++.++|++|+++++.+
T Consensus 91 ~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~ 170 (275)
T TIGR02821 91 DDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFA 170 (275)
T ss_pred cccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEEC
Confidence 122 211100 01 112233334455555554 33788999999999999999999999999999999999
Q ss_pred CcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCc-HHHHHHH
Q 003878 651 GVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVP-LHSLKLL 729 (789)
Q Consensus 651 p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~-~~~~~~~ 729 (789)
|++++... ... .......+|.+. +. +..++|...+... ...||+|+.||..|++|+. .++..+.
T Consensus 171 ~~~~~~~~-~~~-~~~~~~~l~~~~--~~---~~~~~~~~~~~~~--------~~~~plli~~G~~D~~v~~~~~~~~~~ 235 (275)
T TIGR02821 171 PIVAPSRC-PWG-QKAFSAYLGADE--AA---WRSYDASLLVADG--------GRHSTILIDQGTADQFLDEQLRPDAFE 235 (275)
T ss_pred CccCcccC-cch-HHHHHHHhcccc--cc---hhhcchHHHHhhc--------ccCCCeeEeecCCCcccCccccHHHHH
Confidence 99885421 100 001112233321 11 2345565544432 1368999999999999999 6889999
Q ss_pred HHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 730 ATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 730 ~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
++|+++ |.++++.++++++|++.. ......+.+.|+.+++
T Consensus 236 ~~l~~~----------g~~v~~~~~~g~~H~f~~----~~~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 236 QACRAA----------GQALTLRRQAGYDHSYYF----IASFIADHLRHHAERL 275 (275)
T ss_pred HHHHHc----------CCCeEEEEeCCCCccchh----HHHhHHHHHHHHHhhC
Confidence 999988 999999999999999854 3456677788887653
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-19 Score=188.49 Aligned_cols=246 Identities=11% Similarity=0.050 Sum_probs=161.1
Q ss_pred cEEEEEEec-CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCC----
Q 003878 507 HVHQVFVPS-KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGE---- 581 (789)
Q Consensus 507 ~~~~~~~~s-~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~---- 581 (789)
..+.+++.| .-| .++++.+++|+. ...++.|+|+++||..+.............+++..|++|+++|..+.|.
T Consensus 17 ~~~~~~~~s~~l~-~~~~~~vy~P~~-~~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~ 94 (283)
T PLN02442 17 FNRRYKHFSSTLG-CSMTFSVYFPPA-SDSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEG 94 (283)
T ss_pred EEEEEEEeccccC-CceEEEEEcCCc-ccCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCC
Confidence 345555555 356 799999999984 3456899999999987665433333334567777899999999754331
Q ss_pred --------CChhHHhccc-ccCCc-c----hHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEE
Q 003878 582 --------YGEEWHKGGA-LAKKQ-N----CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCAL 647 (789)
Q Consensus 582 --------~g~~~~~~~~-~~~~~-~----~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v 647 (789)
+|..++.... ..++. . ..+++...++... ..+|+++++|+|+|+||++++.++.++|++|++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~--~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~ 172 (283)
T PLN02442 95 EADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNF--DQLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVS 172 (283)
T ss_pred CccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHH--HhcCCCceEEEEEChhHHHHHHHHHhCchhEEEEE
Confidence 1222211111 11111 1 1233333333322 23688999999999999999999999999999999
Q ss_pred ecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcH-HHH
Q 003878 648 AHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPL-HSL 726 (789)
Q Consensus 648 ~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~-~~~ 726 (789)
+.+|++|+... ... .......+|.+. +.++.....+|+.++... .+|+|++||++|.+|+.. ++.
T Consensus 173 ~~~~~~~~~~~-~~~-~~~~~~~~g~~~--~~~~~~d~~~~~~~~~~~----------~~pvli~~G~~D~~v~~~~~s~ 238 (283)
T PLN02442 173 AFAPIANPINC-PWG-QKAFTNYLGSDK--ADWEEYDATELVSKFNDV----------SATILIDQGEADKFLKEQLLPE 238 (283)
T ss_pred EECCccCcccC-chh-hHHHHHHcCCCh--hhHHHcChhhhhhhcccc----------CCCEEEEECCCCccccccccHH
Confidence 99999885421 111 001122345432 223222233344444333 689999999999999974 688
Q ss_pred HHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 727 KLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 727 ~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
.+++++++. |.+++++++++++|.+. ....+..+.+.|..++++
T Consensus 239 ~~~~~l~~~----------g~~~~~~~~pg~~H~~~----~~~~~i~~~~~~~~~~~~ 282 (283)
T PLN02442 239 NFEEACKEA----------GAPVTLRLQPGYDHSYF----FIATFIDDHINHHAQALK 282 (283)
T ss_pred HHHHHHHHc----------CCCeEEEEeCCCCccHH----HHHHHHHHHHHHHHHHhc
Confidence 999999988 88999999999999864 234556666777777664
|
|
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-19 Score=184.92 Aligned_cols=232 Identities=15% Similarity=0.117 Sum_probs=149.2
Q ss_pred EEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCC-ChhHHhcccc--cCCcc
Q 003878 521 KIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEY-GEEWHKGGAL--AKKQN 597 (789)
Q Consensus 521 ~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~-g~~~~~~~~~--~~~~~ 597 (789)
.++...+.|++. .+++.|+||++||..+... .|. .....|+++||.|+++|+||.|.. +..-...... .....
T Consensus 11 ~~~~~~~~p~~~-~~~~~p~vv~~HG~~~~~~--~~~-~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~ 86 (249)
T PRK10566 11 GIEVLHAFPAGQ-RDTPLPTVFFYHGFTSSKL--VYS-YFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQ 86 (249)
T ss_pred CcceEEEcCCCC-CCCCCCEEEEeCCCCcccc--hHH-HHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHH
Confidence 355666777642 2356899999999755432 333 345666669999999999997642 1100000000 00113
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEe-cCCcccccccccccCCccch-hhcCCCC
Q 003878 598 CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA-HVGVMDMLRYHKFTIGHAWV-SDFGCSE 675 (789)
Q Consensus 598 ~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~-~~p~~d~~~~~~~~~~~~~~-~e~g~p~ 675 (789)
..+|+.++++++.+++.+|++||+++|+|+||++++.++.++|++.++++. ..+.+.......+. .... .+.....
T Consensus 87 ~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 164 (249)
T PRK10566 87 NMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVASLMGSGYFTSLARTLFP--PLIPETAAQQAE 164 (249)
T ss_pred HHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEEeeCcHHHHHHHHHhcc--cccccccccHHH
Confidence 467888899999998889999999999999999999999998876544432 23322211000000 0000 0000000
Q ss_pred cHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCC--cEEEEE
Q 003878 676 EEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTN--PIIGRI 753 (789)
Q Consensus 676 ~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~--~~~l~~ 753 (789)
..+.+..+..+++...+.++ ...|+|++||++|..||+.++.++.++++.+ |. .+++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~i---------~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~----------g~~~~~~~~~ 225 (249)
T PRK10566 165 FNNIVAPLAEWEVTHQLEQL---------ADRPLLLWHGLADDVVPAAESLRLQQALRER----------GLDKNLTCLW 225 (249)
T ss_pred HHHHHHHHhhcChhhhhhhc---------CCCCEEEEEcCCCCcCCHHHHHHHHHHHHhc----------CCCcceEEEe
Confidence 11122233445554445443 2479999999999999999999999999876 65 478899
Q ss_pred eCCCCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 754 ERKAGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 754 ~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
++++||.+. .+....+.+||.++|
T Consensus 226 ~~~~~H~~~------~~~~~~~~~fl~~~~ 249 (249)
T PRK10566 226 EPGVRHRIT------PEALDAGVAFFRQHL 249 (249)
T ss_pred cCCCCCccC------HHHHHHHHHHHHhhC
Confidence 999999874 245678999999875
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-18 Score=192.45 Aligned_cols=296 Identities=16% Similarity=0.127 Sum_probs=204.5
Q ss_pred HHHHHHHHHcCCccHHHHHHHHHhhhcCCCCCCceEeCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcE
Q 003878 53 QVELTDSVLKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTA 132 (789)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~ 132 (789)
|+.++++++...+.+..+..+|...+.....+.|...+++++|....+.+.+..||+.+..+++.+.|++.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~------- 190 (417)
T TIGR02800 118 LQLLGKQYTVTASQLRRVAHRIADAIYEKLTGERGAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSRE------- 190 (417)
T ss_pred EEeeeeeEEcCHHHHHHHHHHHHHHHHHHhcCCCCCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCC-------
Confidence 5566677776667778888888888777666777778899999988776667889998865566778887663
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceeccc-ccccccccccCccceeeeeeccccccccccccccccc
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
.+..+.|||||++|||+....| ..+|+++|+++|+..... ...
T Consensus 191 ~~~~p~~Spdg~~la~~~~~~~--~~~i~v~d~~~g~~~~~~~~~~---------------------------------- 234 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSFESG--KPEIYVQDLATGQREKVASFPG---------------------------------- 234 (417)
T ss_pred ceecccCCCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEeecCCC----------------------------------
Confidence 2467789999999999876554 478999999998543211 111
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
....++|+|||+.|+|+... ....+||+++++++..+++
T Consensus 235 ------------------------~~~~~~~spDg~~l~~~~~~----------------~~~~~i~~~d~~~~~~~~l- 273 (417)
T TIGR02800 235 ------------------------MNGAPAFSPDGSKLAVSLSK----------------DGNPDIYVMDLDGKQLTRL- 273 (417)
T ss_pred ------------------------CccceEECCCCCEEEEEECC----------------CCCccEEEEECCCCCEEEC-
Confidence 13568999999999998532 1235699999987654322
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCC
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDD 370 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG 370 (789)
.... .....+.|+|||++|++.+.+.. ...||++++.+++ ...+..... ...+.|+|||
T Consensus 274 -~~~~---~~~~~~~~s~dg~~l~~~s~~~g--~~~iy~~d~~~~~--------------~~~l~~~~~~~~~~~~spdg 333 (417)
T TIGR02800 274 -TNGP---GIDTEPSWSPDGKSIAFTSDRGG--SPQIYMMDADGGE--------------VRRLTFRGGYNASPSWSPDG 333 (417)
T ss_pred -CCCC---CCCCCEEECCCCCEEEEEECCCC--CceEEEEECCCCC--------------EEEeecCCCCccCeEECCCC
Confidence 2211 11235789999999999876543 4579999988742 223332211 1235699999
Q ss_pred CEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccC
Q 003878 371 TVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE 449 (789)
Q Consensus 371 ~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~ 449 (789)
+.+++..... +.++|+.+|+.++. . .+++... ......++++ +.+++....++...+++.+.+ |+..+.++.+
T Consensus 334 ~~i~~~~~~~-~~~~i~~~d~~~~~-~-~~l~~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~ 407 (417)
T TIGR02800 334 DLIAFVHREG-GGFNIAVMDLDGGG-E-RVLTDTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLG 407 (417)
T ss_pred CEEEEEEccC-CceEEEEEeCCCCC-e-EEccCCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCC
Confidence 9998877653 67899999998865 3 4444332 2244566664 568888888888889988876 6655677766
Q ss_pred CeeEEEeec
Q 003878 450 IGSVNAISA 458 (789)
Q Consensus 450 ~~~v~~~s~ 458 (789)
.+.+..++|
T Consensus 408 ~g~~~~~~w 416 (417)
T TIGR02800 408 NGDVREPAW 416 (417)
T ss_pred CCCcCCCCC
Confidence 555544433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=179.63 Aligned_cols=218 Identities=14% Similarity=0.084 Sum_probs=151.0
Q ss_pred EEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCC-CCCChhHHhcc
Q 003878 512 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGG-GEYGEEWHKGG 590 (789)
Q Consensus 512 ~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~-g~~g~~~~~~~ 590 (789)
.+.+.|| .+|.+|+..|++. ...+.|+||++||-.+. . .+...++.+|.++||.|+.+|.||+ |+.+..+.+..
T Consensus 13 ~~~~~dG-~~L~Gwl~~P~~~-~~~~~~~vIi~HGf~~~-~--~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~t 87 (307)
T PRK13604 13 VICLENG-QSIRVWETLPKEN-SPKKNNTILIASGFARR-M--DHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEFT 87 (307)
T ss_pred eEEcCCC-CEEEEEEEcCccc-CCCCCCEEEEeCCCCCC-h--HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccCc
Confidence 3567899 9999999999853 24678999999995442 2 2233456777779999999999886 76655553322
Q ss_pred cccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCc-----
Q 003878 591 ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGH----- 665 (789)
Q Consensus 591 ~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~----- 665 (789)
.. ....|+.++++||.+++ .++|+++|+|+||.++..++.. + ..+++|+.+|+.++..+.......
T Consensus 88 ~s----~g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~-~-~v~~lI~~sp~~~l~d~l~~~~~~~~~~~ 158 (307)
T PRK13604 88 MS----IGKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINE-I-DLSFLITAVGVVNLRDTLERALGYDYLSL 158 (307)
T ss_pred cc----ccHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcC-C-CCCEEEEcCCcccHHHHHHHhhhcccccC
Confidence 11 12589999999998863 4689999999999998777764 3 389999999999976443210000
Q ss_pred cch--hh---c-CCCC-cHHHHHHHHhc------CcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHH
Q 003878 666 AWV--SD---F-GCSE-EEEEFYWLIKY------SPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATM 732 (789)
Q Consensus 666 ~~~--~e---~-g~p~-~~~~~~~l~~~------sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L 732 (789)
.+. .+ + |.+- ....+....++ +|...+++. ..|+|++||.+|+.||+.++.++++++
T Consensus 159 p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l----------~~PvLiIHG~~D~lVp~~~s~~l~e~~ 228 (307)
T PRK13604 159 PIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGL----------DIPFIAFTANNDSWVKQSEVIDLLDSI 228 (307)
T ss_pred cccccccccccccccccHHHHHHHHHhcCccccccHHHHHhhc----------CCCEEEEEcCCCCccCHHHHHHHHHHh
Confidence 000 00 1 1110 01112222222 344555554 579999999999999999999999987
Q ss_pred HHhhccCCCCCCCCCcEEEEEeCCCCcCCCCch
Q 003878 733 QYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT 765 (789)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~ 765 (789)
+. .+.+++++++++|.+....
T Consensus 229 ~s------------~~kkl~~i~Ga~H~l~~~~ 249 (307)
T PRK13604 229 RS------------EQCKLYSLIGSSHDLGENL 249 (307)
T ss_pred cc------------CCcEEEEeCCCccccCcch
Confidence 53 3578999999999987643
|
|
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-17 Score=179.22 Aligned_cols=238 Identities=15% Similarity=0.104 Sum_probs=163.2
Q ss_pred CcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCC-CCCHHHHHHHHcCCeEEEEEeecCCCCCCh
Q 003878 506 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP-SFSVSRTILMRHLGAVFCIANIRGGGEYGE 584 (789)
Q Consensus 506 ~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~-~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~ 584 (789)
...+.+.+++.+| .|++.+|+|+. ...|+|||+|||.....+. .+......+....|+.|+.+|||.+.+.
T Consensus 55 ~~~~~~~i~~~~g--~i~~~~y~P~~----~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~-- 126 (318)
T PRK10162 55 MATRAYMVPTPYG--QVETRLYYPQP----DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA-- 126 (318)
T ss_pred ceEEEEEEecCCC--ceEEEEECCCC----CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC--
Confidence 3467788888888 49999999964 2469999999987554443 3333333444446999999999987652
Q ss_pred hHHhcccccCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC------CCceeEEEecCCcccc
Q 003878 585 EWHKGGALAKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQR------PDLFGCALAHVGVMDM 655 (789)
Q Consensus 585 ~~~~~~~~~~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~------pd~f~a~v~~~p~~d~ 655 (789)
.....++|+.++++|+.++ --+|++||+|+|+|+||.+++.++.+. +..++++|+.+|++|+
T Consensus 127 ---------~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~ 197 (318)
T PRK10162 127 ---------RFPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGL 197 (318)
T ss_pred ---------CCCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCC
Confidence 1234689999999999764 236899999999999999999888653 3578999999999886
Q ss_pred cccccccCCccchhhcCCC---CcHHHHHHH-H--------hcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcH
Q 003878 656 LRYHKFTIGHAWVSDFGCS---EEEEEFYWL-I--------KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPL 723 (789)
Q Consensus 656 ~~~~~~~~~~~~~~e~g~p---~~~~~~~~l-~--------~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~ 723 (789)
..... + ..++.. -..+..+++ . ..+|+...... +-....||++|++|+.|+.+.
T Consensus 198 ~~~~s------~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~p~~~p~~~-----~l~~~lPp~~i~~g~~D~L~d-- 263 (318)
T PRK10162 198 RDSVS------R-RLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNN-----DLTRDVPPCFIAGAEFDPLLD-- 263 (318)
T ss_pred CCChh------H-HHhCCCccccCHHHHHHHHHHhCCCccccCCcccCcchh-----hhhcCCCCeEEEecCCCcCcC--
Confidence 32110 0 111110 011111111 1 11233221000 000136999999999999864
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCc---hhhHHHHHHHHHHHHHHHhC
Q 003878 724 HSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP---TQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 724 ~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~ 784 (789)
++..|.++|+++ |.+++++++++..|++... ..+..+.+..+.+||.++++
T Consensus 264 e~~~~~~~L~~a----------Gv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 264 DSRLLYQTLAAH----------QQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred hHHHHHHHHHHc----------CCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 899999999998 9999999999999997532 23345667788899988875
|
|
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-18 Score=182.16 Aligned_cols=243 Identities=20% Similarity=0.227 Sum_probs=160.5
Q ss_pred CCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCC
Q 003878 504 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 583 (789)
Q Consensus 504 ~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g 583 (789)
..+.+..+.|.+.+| .+|.++++.|++. .++.|+||.+||..+....+ .....+.. +|++|+.+|.||-|+..
T Consensus 52 ~~~~vy~v~f~s~~g-~~V~g~l~~P~~~--~~~~Pavv~~hGyg~~~~~~---~~~~~~a~-~G~~vl~~d~rGqg~~~ 124 (320)
T PF05448_consen 52 PGVEVYDVSFESFDG-SRVYGWLYRPKNA--KGKLPAVVQFHGYGGRSGDP---FDLLPWAA-AGYAVLAMDVRGQGGRS 124 (320)
T ss_dssp SSEEEEEEEEEEGGG-EEEEEEEEEES-S--SSSEEEEEEE--TT--GGGH---HHHHHHHH-TT-EEEEE--TTTSSSS
T ss_pred CCEEEEEEEEEccCC-CEEEEEEEecCCC--CCCcCEEEEecCCCCCCCCc---cccccccc-CCeEEEEecCCCCCCCC
Confidence 356778999999999 9999999999953 48999999999965542221 12234555 99999999999988543
Q ss_pred hhHHh-----------cccccCC-----cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEE
Q 003878 584 EEWHK-----------GGALAKK-----QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCAL 647 (789)
Q Consensus 584 ~~~~~-----------~~~~~~~-----~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v 647 (789)
++... .+..... .+.+.|.+.++++|.++..+|++||+++|.|.||.++++++...| ++++++
T Consensus 125 ~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~ 203 (320)
T PF05448_consen 125 PDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAA 203 (320)
T ss_dssp -B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEE
T ss_pred CCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEE
Confidence 33211 1111101 134689999999999999999999999999999999999999975 699999
Q ss_pred ecCCcc-cccccccccC-Cccc---h--hhcCCC---CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCC
Q 003878 648 AHVGVM-DMLRYHKFTI-GHAW---V--SDFGCS---EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 717 (789)
Q Consensus 648 ~~~p~~-d~~~~~~~~~-~~~~---~--~e~g~p---~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D 717 (789)
+.+|++ |+.+...... ...| . -.+.++ ..++.++.|.-++....++.+ .+|+|+..|..|
T Consensus 204 ~~vP~l~d~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri----------~~pvl~~~gl~D 273 (320)
T PF05448_consen 204 ADVPFLCDFRRALELRADEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRI----------KCPVLFSVGLQD 273 (320)
T ss_dssp EESESSSSHHHHHHHT--STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG------------SEEEEEEETT-
T ss_pred ecCCCccchhhhhhcCCccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHc----------CCCEEEEEecCC
Confidence 999954 4443332221 1111 0 112222 344566777777777777776 799999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHH
Q 003878 718 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 718 ~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 782 (789)
..|||.-....+++|. .+.++.+||..||..... ......+.||.++
T Consensus 274 ~~cPP~t~fA~yN~i~-------------~~K~l~vyp~~~He~~~~-----~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 274 PVCPPSTQFAAYNAIP-------------GPKELVVYPEYGHEYGPE-----FQEDKQLNFLKEH 320 (320)
T ss_dssp SSS-HHHHHHHHCC---------------SSEEEEEETT--SSTTHH-----HHHHHHHHHHHH-
T ss_pred CCCCchhHHHHHhccC-------------CCeeEEeccCcCCCchhh-----HHHHHHHHHHhcC
Confidence 9999998888887774 357999999999987532 2234677888764
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-17 Score=183.04 Aligned_cols=237 Identities=14% Similarity=0.040 Sum_probs=156.7
Q ss_pred CCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCCh
Q 003878 505 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE 584 (789)
Q Consensus 505 ~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~ 584 (789)
.+..+.+.++..|| .+|+++++.|+. +++.|+||+.|| .+......|.. ....|.++||+|+++|+||.|+...
T Consensus 165 ~~~~e~v~i~~~~g-~~l~g~l~~P~~---~~~~P~Vli~gG-~~~~~~~~~~~-~~~~La~~Gy~vl~~D~pG~G~s~~ 238 (414)
T PRK05077 165 PGELKELEFPIPGG-GPITGFLHLPKG---DGPFPTVLVCGG-LDSLQTDYYRL-FRDYLAPRGIAMLTIDMPSVGFSSK 238 (414)
T ss_pred CCceEEEEEEcCCC-cEEEEEEEECCC---CCCccEEEEeCC-cccchhhhHHH-HHHHHHhCCCEEEEECCCCCCCCCC
Confidence 34578999999999 899999999984 467898886555 44332233333 3445556999999999999775421
Q ss_pred hHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc--c-
Q 003878 585 EWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK--F- 661 (789)
Q Consensus 585 ~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~--~- 661 (789)
+. ..........+++++|.....+|++||+++|+|+||++++.++..+|++++++|+..|+++...... .
T Consensus 239 -~~------~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~~ 311 (414)
T PRK05077 239 -WK------LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQQ 311 (414)
T ss_pred -CC------ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhhh
Confidence 10 0111122335788999999899999999999999999999999998999999999998875221110 0
Q ss_pred cCCc----cchhhcCCC-CcH-HHHHHHHhcCccc--CC-CCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHH
Q 003878 662 TIGH----AWVSDFGCS-EEE-EEFYWLIKYSPLH--NV-RRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATM 732 (789)
Q Consensus 662 ~~~~----~~~~e~g~p-~~~-~~~~~l~~~sP~~--~v-~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L 732 (789)
.... .+....|.+ .+. .....+..++.-. .+ .+ ...|+|+++|++|.+||++++..+.+..
T Consensus 312 ~~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~----------i~~PvLiI~G~~D~ivP~~~a~~l~~~~ 381 (414)
T PRK05077 312 QVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRR----------CPTPMLSGYWKNDPFSPEEDSRLIASSS 381 (414)
T ss_pred hchHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccC----------CCCcEEEEecCCCCCCCHHHHHHHHHhC
Confidence 0000 011223433 222 2233344443211 11 22 3679999999999999999998776544
Q ss_pred HHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 733 QYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
. ..++.++++. |... ...+.+..+.+||.++|
T Consensus 382 ~--------------~~~l~~i~~~-~~~e----~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 382 A--------------DGKLLEIPFK-PVYR----NFDKALQEISDWLEDRL 413 (414)
T ss_pred C--------------CCeEEEccCC-CccC----CHHHHHHHHHHHHHHHh
Confidence 3 2367778876 3332 12466778899998876
|
|
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-17 Score=176.15 Aligned_cols=255 Identities=12% Similarity=0.065 Sum_probs=164.3
Q ss_pred CCCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCC
Q 003878 502 DRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGE 581 (789)
Q Consensus 502 ~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~ 581 (789)
.+..+..+...+++.|| .+|.+..+.|.+. ..+.|+||++||.... ....+.. ....|.++||.|+.+|+||.|.
T Consensus 26 ~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~--~~~~~~VvllHG~~~~-~~~~~~~-~~~~L~~~Gy~V~~~D~rGhG~ 100 (330)
T PLN02298 26 ALKGIKGSKSFFTSPRG-LSLFTRSWLPSSS--SPPRALIFMVHGYGND-ISWTFQS-TAIFLAQMGFACFALDLEGHGR 100 (330)
T ss_pred hccCCccccceEEcCCC-CEEEEEEEecCCC--CCCceEEEEEcCCCCC-cceehhH-HHHHHHhCCCEEEEecCCCCCC
Confidence 44455566677888999 9999988877642 2356899999997433 2333332 2334555899999999999886
Q ss_pred CChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccc
Q 003878 582 YGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKF 661 (789)
Q Consensus 582 ~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~ 661 (789)
.... .+....-....+|+.+++++|......+..+++++|+|+||.+++.++.++|++++++|+.+|+..+......
T Consensus 101 S~~~---~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~ 177 (330)
T PLN02298 101 SEGL---RAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIRP 177 (330)
T ss_pred CCCc---cccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccCC
Confidence 4321 1111111234688999999998754334457999999999999999999999999999999987654321100
Q ss_pred c--------CCccchhhc-CCC---------CcHHHHHHHHhcCcc----------------------cCCCCCCCCCCC
Q 003878 662 T--------IGHAWVSDF-GCS---------EEEEEFYWLIKYSPL----------------------HNVRRPWEQNPD 701 (789)
Q Consensus 662 ~--------~~~~~~~e~-g~p---------~~~~~~~~l~~~sP~----------------------~~v~~~~~~~~~ 701 (789)
. ....+.... ..+ ..+ ....+...+|. ..+.++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i------ 250 (330)
T PLN02298 178 PWPIPQILTFVARFLPTLAIVPTADLLEKSVKVP-AKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDV------ 250 (330)
T ss_pred chHHHHHHHHHHHHCCCCccccCCCcccccccCH-HHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhc------
Confidence 0 000000000 000 000 01111122222 112222
Q ss_pred CCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCC--chhhHHHHHHHHHHHH
Q 003878 702 KPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL--PTQKMIDEAADRYGFM 779 (789)
Q Consensus 702 ~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~--~~~~~~~~~~~~~~fl 779 (789)
..|+||+||.+|..||+.++.++++++.. ...++.+++++||.... +..........+.+||
T Consensus 251 ----~~PvLii~G~~D~ivp~~~~~~l~~~i~~------------~~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl 314 (330)
T PLN02298 251 ----SIPFIVLHGSADVVTDPDVSRALYEEAKS------------EDKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWL 314 (330)
T ss_pred ----CCCEEEEecCCCCCCCHHHHHHHHHHhcc------------CCceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999999887753 23578899999998653 2222234567889999
Q ss_pred HHHhCCCC
Q 003878 780 AKMLGASW 787 (789)
Q Consensus 780 ~~~l~~~~ 787 (789)
.++++...
T Consensus 315 ~~~~~~~~ 322 (330)
T PLN02298 315 NERCTGKA 322 (330)
T ss_pred HHhccCCC
Confidence 99987653
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-16 Score=174.61 Aligned_cols=269 Identities=13% Similarity=0.040 Sum_probs=173.2
Q ss_pred CCEEEEEEEcCCCC----eeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEE--EEEecCCceEEEEEEE
Q 003878 90 GNKYFYFHNTGLQP----QSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLA--YALSYSGSDWATIKLM 163 (789)
Q Consensus 90 g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la--~~~~~~g~~~~~i~v~ 163 (789)
+.++.|........ ...||+.+..+++.+.|+..+.. ..++.|||||+.++ |.....| ..+||++
T Consensus 146 ~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~-------~~sP~wSPDG~~~~~~y~S~~~g--~~~I~~~ 216 (428)
T PRK01029 146 SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSL-------SITPTWMHIGSGFPYLYVSYKLG--VPKIFLG 216 (428)
T ss_pred cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCC-------cccceEccCCCceEEEEEEccCC--CceEEEE
Confidence 78999998765422 46799998766666666654322 35789999999854 4555454 5799999
Q ss_pred EcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEE
Q 003878 164 RIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWT 243 (789)
Q Consensus 164 dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~ws 243 (789)
|+.+|+... +....+ ....++||
T Consensus 217 ~l~~g~~~~--lt~~~g-------------------------------------------------------~~~~p~wS 239 (428)
T PRK01029 217 SLENPAGKK--ILALQG-------------------------------------------------------NQLMPTFS 239 (428)
T ss_pred ECCCCCceE--eecCCC-------------------------------------------------------CccceEEC
Confidence 999986543 222200 13579999
Q ss_pred eCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEE--ECCCCC-CCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEc
Q 003878 244 HDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYH--FLGTKQ-SEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEE 320 (789)
Q Consensus 244 pDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~lg~~~-~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~ 320 (789)
|||+.|+|+.... ....+|.+ ++.++. .+...+..... .....+.|||||++|++.+.+
T Consensus 240 PDG~~Laf~s~~~----------------g~~di~~~~~~~~~g~~g~~~~lt~~~~--~~~~~p~wSPDG~~Laf~s~~ 301 (428)
T PRK01029 240 PRKKLLAFISDRY----------------GNPDLFIQSFSLETGAIGKPRRLLNEAF--GTQGNPSFSPDGTRLVFVSNK 301 (428)
T ss_pred CCCCEEEEEECCC----------------CCcceeEEEeecccCCCCcceEeecCCC--CCcCCeEECCCCCEEEEEECC
Confidence 9999999986432 12235554 343321 22233433221 112357999999999998754
Q ss_pred CCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEE
Q 003878 321 NCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFE 399 (789)
Q Consensus 321 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~ 399 (789)
.. ..+||++++.... .....++... ....+.|||||+.|++.+..+ +..+|+++|+++++ .+.
T Consensus 302 ~g--~~~ly~~~~~~~g------------~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~-g~~~I~v~dl~~g~-~~~ 365 (428)
T PRK01029 302 DG--RPRIYIMQIDPEG------------QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK-GVRQICVYDLATGR-DYQ 365 (428)
T ss_pred CC--CceEEEEECcccc------------cceEEeccCCCCccceeECCCCCEEEEEEcCC-CCcEEEEEECCCCC-eEE
Confidence 33 4679999886421 0122233221 112356999999999988764 45799999999887 555
Q ss_pred eccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccC
Q 003878 400 VIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARRE 461 (789)
Q Consensus 400 l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d 461 (789)
++... .....+.|+++ +.|++....++...|+++++++++. +.|+...+.+..++|+|-
T Consensus 366 Lt~~~--~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~-~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 366 LTTSP--ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT-RKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred ccCCC--CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCcccCceecCC
Confidence 55332 34567888875 4566666666778999999986665 666655555555666653
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.6e-16 Score=175.45 Aligned_cols=260 Identities=19% Similarity=0.135 Sum_probs=172.5
Q ss_pred EEEEEEEcC-CCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCce
Q 003878 92 KYFYFHNTG-LQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV 170 (789)
Q Consensus 92 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~ 170 (789)
++.|..... ......||+.+..+...++|+..+. .+..+.|||||++|||+....| ..+||++|+.+|+.
T Consensus 184 riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~-------~~~~p~wSPDG~~La~~s~~~g--~~~L~~~dl~tg~~ 254 (448)
T PRK04792 184 RIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPE-------PLMSPAWSPDGRKLAYVSFENR--KAEIFVQDIYTQVR 254 (448)
T ss_pred EEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCC-------cccCceECCCCCEEEEEEecCC--CcEEEEEECCCCCe
Confidence 455554433 3334568887754555677766542 3567899999999999887554 57899999999865
Q ss_pred ecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEE
Q 003878 171 EADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFF 250 (789)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~ 250 (789)
.. +....+ ....++|||||+.|+
T Consensus 255 ~~--lt~~~g-------------------------------------------------------~~~~~~wSPDG~~La 277 (448)
T PRK04792 255 EK--VTSFPG-------------------------------------------------------INGAPRFSPDGKKLA 277 (448)
T ss_pred EE--ecCCCC-------------------------------------------------------CcCCeeECCCCCEEE
Confidence 43 221100 135789999999999
Q ss_pred EEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEE
Q 003878 251 YSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYY 330 (789)
Q Consensus 251 y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~ 330 (789)
|+.... ...+||++++.++..+ .+... ......+.|||||++|++.+.+.. ..+||+
T Consensus 278 ~~~~~~----------------g~~~Iy~~dl~tg~~~--~lt~~---~~~~~~p~wSpDG~~I~f~s~~~g--~~~Iy~ 334 (448)
T PRK04792 278 LVLSKD----------------GQPEIYVVDIATKALT--RITRH---RAIDTEPSWHPDGKSLIFTSERGG--KPQIYR 334 (448)
T ss_pred EEEeCC----------------CCeEEEEEECCCCCeE--ECccC---CCCccceEECCCCCEEEEEECCCC--CceEEE
Confidence 975421 2357999999876432 22222 112346889999999999875443 468999
Q ss_pred EECCCCCCCcccccccCCCCccEeeec-cccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCcee
Q 003878 331 CDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVL 409 (789)
Q Consensus 331 ~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i 409 (789)
+|++++. ...++. +.....+.|+|||+.|++.+..+ +.++|+++|+++++ .+.+.... ..
T Consensus 335 ~dl~~g~--------------~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~-g~~~I~~~dl~~g~-~~~lt~~~---~d 395 (448)
T PRK04792 335 VNLASGK--------------VSRLTFEGEQNLGGSITPDGRSMIMVNRTN-GKFNIARQDLETGA-MQVLTSTR---LD 395 (448)
T ss_pred EECCCCC--------------EEEEecCCCCCcCeeECCCCCEEEEEEecC-CceEEEEEECCCCC-eEEccCCC---CC
Confidence 9998752 223332 21112256999999999987653 56899999998886 45554332 12
Q ss_pred eeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeeccc
Q 003878 410 ESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR 460 (789)
Q Consensus 410 ~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~ 460 (789)
....|+++ +.+++....++...|++++.+ |+..+.++.+.+.+..++|+|
T Consensus 396 ~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 396 ESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 34467764 567777777888889999986 665567766655555566654
|
|
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-17 Score=166.60 Aligned_cols=194 Identities=13% Similarity=0.101 Sum_probs=131.3
Q ss_pred EEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChh--HHhcccccCCcchHHH
Q 003878 524 MFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE--WHKGGALAKKQNCFDD 601 (789)
Q Consensus 524 ~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~--~~~~~~~~~~~~~~~D 601 (789)
++++.|++. +++.|+||++||+.+..........+..++++.|++|+++|+||++..+.. |..............|
T Consensus 1 ~~ly~P~~~--~~~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (212)
T TIGR01840 1 MYVYVPAGL--TGPRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVES 78 (212)
T ss_pred CEEEcCCCC--CCCCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccHHH
Confidence 478889874 468899999999876543322111245666668999999999997754443 3332222223345788
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHH
Q 003878 602 FISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFY 681 (789)
Q Consensus 602 ~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~ 681 (789)
+...++++.++..+|++||+|+|+|+||.+++.++.++|++|+++++.++..-...... .... .....+.....+.
T Consensus 79 ~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~~~---~~~~-~~~~~~~~~~~~~ 154 (212)
T TIGR01840 79 LHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEASSS---ISAT-PQMCTAATAASVC 154 (212)
T ss_pred HHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccccc---hhhH-hhcCCCCCHHHHH
Confidence 88999999988778999999999999999999999999999999988876542111000 0000 1111122222222
Q ss_pred HH-HhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHh
Q 003878 682 WL-IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYV 735 (789)
Q Consensus 682 ~l-~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~ 735 (789)
.+ .... ..... ..||++|+||.+|..||+..+.+++++|++.
T Consensus 155 ~~~~~~~--~~~~~----------~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 155 RLVRGMQ--SEYNG----------PTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred HHHhccC--CcccC----------CCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 22 2211 11112 3678899999999999999999999999986
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-15 Score=171.62 Aligned_cols=237 Identities=13% Similarity=0.103 Sum_probs=166.9
Q ss_pred cccceeeEEEeeecccc----ceeeeeeec------cc-----ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCC
Q 003878 208 LRGIFFFFYLFSLVKST----IYSFWSVVS------QF-----KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN 272 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g----~~~l~~~~~------~~-----~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~ 272 (789)
.+|+|..+++|+++..| ..+||.++. ++ ...+++|||||+.|+|.....
T Consensus 160 ~~g~f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~---------------- 223 (435)
T PRK05137 160 EKGYFDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYAN---------------- 223 (435)
T ss_pred CCCcCCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecC----------------
Confidence 47899999999999888 779999876 11 235799999999999987532
Q ss_pred cccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCcc
Q 003878 273 LYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPF 352 (789)
Q Consensus 273 ~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 352 (789)
...+||++++.++..+ .+...+ .....+.|||||+.|++...... ..+||++|++++. .
T Consensus 224 g~~~i~~~dl~~g~~~--~l~~~~---g~~~~~~~SPDG~~la~~~~~~g--~~~Iy~~d~~~~~--------------~ 282 (435)
T PRK05137 224 GRPRVYLLDLETGQRE--LVGNFP---GMTFAPRFSPDGRKVVMSLSQGG--NTDIYTMDLRSGT--------------T 282 (435)
T ss_pred CCCEEEEEECCCCcEE--EeecCC---CcccCcEECCCCCEEEEEEecCC--CceEEEEECCCCc--------------e
Confidence 2357999999776432 232222 12346899999999998875443 5789999998752 2
Q ss_pred Eeeecccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeE
Q 003878 353 VKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKY 430 (789)
Q Consensus 353 ~~l~~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~ 430 (789)
..++.... ...+.|+|||+.|+|.++++ +..+|+++|+++++ .+.++... .....+.|+++ +.+++.....+..
T Consensus 283 ~~Lt~~~~~~~~~~~spDG~~i~f~s~~~-g~~~Iy~~d~~g~~-~~~lt~~~--~~~~~~~~SpdG~~ia~~~~~~~~~ 358 (435)
T PRK05137 283 TRLTDSPAIDTSPSYSPDGSQIVFESDRS-GSPQLYVMNADGSN-PRRISFGG--GRYSTPVWSPRGDLIAFTKQGGGQF 358 (435)
T ss_pred EEccCCCCccCceeEcCCCCEEEEEECCC-CCCeEEEEECCCCC-eEEeecCC--CcccCeEECCCCCEEEEEEcCCCce
Confidence 33333221 12356999999999998765 35789999998776 56665432 23445678875 4566655555667
Q ss_pred EEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCC--cEEEEEECCCCC
Q 003878 431 VLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIP--GIVYQCNLKTET 487 (789)
Q Consensus 431 ~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P--~~ly~~dl~tg~ 487 (789)
+|++++++++.. +.++.. ..+..++++||++.++|+....... ..+|.+|+++++
T Consensus 359 ~i~~~d~~~~~~-~~lt~~-~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 359 SIGVMKPDGSGE-RILTSG-FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred EEEEEECCCCce-EeccCC-CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 899999975543 555543 2355678999999999877654443 589999998774
|
|
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.5e-17 Score=159.25 Aligned_cols=232 Identities=19% Similarity=0.179 Sum_probs=164.0
Q ss_pred CCCCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCC
Q 003878 501 FDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGG 580 (789)
Q Consensus 501 ~~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g 580 (789)
+.....++-.++|++.+| .+|.+|++.|+.- .++.|+||..||-.+....+. .++.|.. .||+|+..|.||.|
T Consensus 49 ~~~~~ve~ydvTf~g~~g-~rI~gwlvlP~~~--~~~~P~vV~fhGY~g~~g~~~---~~l~wa~-~Gyavf~MdvRGQg 121 (321)
T COG3458 49 FTLPRVEVYDVTFTGYGG-ARIKGWLVLPRHE--KGKLPAVVQFHGYGGRGGEWH---DMLHWAV-AGYAVFVMDVRGQG 121 (321)
T ss_pred ccCCceEEEEEEEeccCC-ceEEEEEEeeccc--CCccceEEEEeeccCCCCCcc---ccccccc-cceeEEEEecccCC
Confidence 333455678899999999 9999999999973 389999999999555433221 2344555 89999999999977
Q ss_pred CCCh------------hHHhcccccCC-----cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCce
Q 003878 581 EYGE------------EWHKGGALAKK-----QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLF 643 (789)
Q Consensus 581 ~~g~------------~~~~~~~~~~~-----~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f 643 (789)
..-. .|...|..+.+ ...|.|...+++.|.+...+|++||++.|+|.||.|+++++...| ++
T Consensus 122 ~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~-ri 200 (321)
T COG3458 122 SSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDP-RI 200 (321)
T ss_pred CccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcCh-hh
Confidence 6522 12222222322 356899999999999999999999999999999999999999965 89
Q ss_pred eEEEecCCcccc-cccccccCCccchhh------cCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCC
Q 003878 644 GCALAHVGVMDM-LRYHKFTIGHAWVSD------FGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADH 716 (789)
Q Consensus 644 ~a~v~~~p~~d~-~~~~~~~~~~~~~~e------~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~ 716 (789)
+++++.+|++.- .+.........+ .| .-.|...+.++.|.-++-.+.+.++ +.|+|+..|..
T Consensus 201 k~~~~~~Pfl~df~r~i~~~~~~~y-dei~~y~k~h~~~e~~v~~TL~yfD~~n~A~Ri----------K~pvL~svgL~ 269 (321)
T COG3458 201 KAVVADYPFLSDFPRAIELATEGPY-DEIQTYFKRHDPKEAEVFETLSYFDIVNLAARI----------KVPVLMSVGLM 269 (321)
T ss_pred hcccccccccccchhheeecccCcH-HHHHHHHHhcCchHHHHHHHHhhhhhhhHHHhh----------ccceEEeeccc
Confidence 999999998753 222221111111 11 1223334445544444433344444 78999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCc
Q 003878 717 DDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP 764 (789)
Q Consensus 717 D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~ 764 (789)
|+.|||......+++|.. +.++.+|+.-+|.....
T Consensus 270 D~vcpPstqFA~yN~l~~-------------~K~i~iy~~~aHe~~p~ 304 (321)
T COG3458 270 DPVCPPSTQFAAYNALTT-------------SKTIEIYPYFAHEGGPG 304 (321)
T ss_pred CCCCCChhhHHHhhcccC-------------CceEEEeeccccccCcc
Confidence 999999998888887753 23566777777976543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-15 Score=169.69 Aligned_cols=261 Identities=16% Similarity=0.102 Sum_probs=172.9
Q ss_pred CEEEEEEEcCC-CCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCc
Q 003878 91 NKYFYFHNTGL-QPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI 169 (789)
Q Consensus 91 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~ 169 (789)
.++.|.....+ ...+.||+.+..+++.+.|+..+. .+..++|||||++|||+....| ..+|+++|+.+|+
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~-------~~~~p~wSPDG~~la~~s~~~g--~~~i~i~dl~~G~ 234 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQ-------PLMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGA 234 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCC-------ceeeeEEcCCCCEEEEEEecCC--CcEEEEEECCCCC
Confidence 56777776433 335679998865555666665432 3678999999999999876444 4689999999986
Q ss_pred eecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEE
Q 003878 170 VEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGF 249 (789)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i 249 (789)
... +.... . ....++|||||+.|
T Consensus 235 ~~~--l~~~~---------------------~----------------------------------~~~~~~~SPDG~~L 257 (429)
T PRK03629 235 VRQ--VASFP---------------------R----------------------------------HNGAPAFSPDGSKL 257 (429)
T ss_pred eEE--ccCCC---------------------C----------------------------------CcCCeEECCCCCEE
Confidence 433 11110 0 13679999999999
Q ss_pred EEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEE
Q 003878 250 FYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVY 329 (789)
Q Consensus 250 ~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~ 329 (789)
+|+.... ...+||++++.++... .+.... .....+.|||||++|++.+.+.. ..+||
T Consensus 258 a~~~~~~----------------g~~~I~~~d~~tg~~~--~lt~~~---~~~~~~~wSPDG~~I~f~s~~~g--~~~Iy 314 (429)
T PRK03629 258 AFALSKT----------------GSLNLYVMDLASGQIR--QVTDGR---SNNTEPTWFPDSQNLAYTSDQAG--RPQVY 314 (429)
T ss_pred EEEEcCC----------------CCcEEEEEECCCCCEE--EccCCC---CCcCceEECCCCCEEEEEeCCCC--CceEE
Confidence 9985321 2246999998765332 232222 22347899999999999876443 46899
Q ss_pred EEECCCCCCCcccccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCce
Q 003878 330 YCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDV 408 (789)
Q Consensus 330 ~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~ 408 (789)
+++++++. ...++... ....+.|+|||+.|++.+..+ ....|+.+|+++++ .+.+.... .
T Consensus 315 ~~d~~~g~--------------~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~-~~~Lt~~~---~ 375 (429)
T PRK03629 315 KVNINGGA--------------PQRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGG-VQVLTDTF---L 375 (429)
T ss_pred EEECCCCC--------------eEEeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCC-eEEeCCCC---C
Confidence 99998752 12232211 112356999999999887764 35789999998876 55555322 2
Q ss_pred eeeEEEecCCE-EEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeeccc
Q 003878 409 LESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR 460 (789)
Q Consensus 409 i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~ 460 (789)
.....|++|+. +++...+.+...|++++++ |+..+.|+...+.+..++|+|
T Consensus 376 ~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 376 DETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCcccCC
Confidence 34677888654 5555555556789999997 655467765455565566654
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-15 Score=170.80 Aligned_cols=260 Identities=13% Similarity=0.097 Sum_probs=170.4
Q ss_pred CEEEEEEEcCCCC--eeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCC
Q 003878 91 NKYFYFHNTGLQP--QSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ 168 (789)
Q Consensus 91 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg 168 (789)
.+++|..+.++.. ...||+.+..+...+.|...+. .+..++|||||++|||+....| ..+|+++|+.+|
T Consensus 166 ~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~-------~v~~p~wSpDG~~lay~s~~~g--~~~i~~~dl~~g 236 (435)
T PRK05137 166 TRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSS-------LVLTPRFSPNRQEITYMSYANG--RPRVYLLDLETG 236 (435)
T ss_pred CeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCC-------CeEeeEECCCCCEEEEEEecCC--CCEEEEEECCCC
Confidence 4778877655422 4578988765455566665432 3678999999999999886555 379999999998
Q ss_pred ceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcE
Q 003878 169 IVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKG 248 (789)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~ 248 (789)
+... +....+ ....++|||||+.
T Consensus 237 ~~~~--l~~~~g-------------------------------------------------------~~~~~~~SPDG~~ 259 (435)
T PRK05137 237 QREL--VGNFPG-------------------------------------------------------MTFAPRFSPDGRK 259 (435)
T ss_pred cEEE--eecCCC-------------------------------------------------------cccCcEECCCCCE
Confidence 6542 222100 1367899999999
Q ss_pred EEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEE
Q 003878 249 FFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKV 328 (789)
Q Consensus 249 i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i 328 (789)
|+|+.... ...+||++++.++... .+... +.....+.|||||++|+|.+.+.. ..+|
T Consensus 260 la~~~~~~----------------g~~~Iy~~d~~~~~~~--~Lt~~---~~~~~~~~~spDG~~i~f~s~~~g--~~~I 316 (435)
T PRK05137 260 VVMSLSQG----------------GNTDIYTMDLRSGTTT--RLTDS---PAIDTSPSYSPDGSQIVFESDRSG--SPQL 316 (435)
T ss_pred EEEEEecC----------------CCceEEEEECCCCceE--EccCC---CCccCceeEcCCCCEEEEEECCCC--CCeE
Confidence 99985422 2356999998765432 23222 222346899999999999875433 4689
Q ss_pred EEEECCCCCCCcccccccCCCCccEeeecc-ccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCc
Q 003878 329 YYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERD 407 (789)
Q Consensus 329 ~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~ 407 (789)
|++|++++. ...++.+ .....+.|+|||+.|++.+... ..++|++++++++. .+ ++... .
T Consensus 317 y~~d~~g~~--------------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~~~~-~~-~lt~~--~ 377 (435)
T PRK05137 317 YVMNADGSN--------------PRRISFGGGRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPDGSG-ER-ILTSG--F 377 (435)
T ss_pred EEEECCCCC--------------eEEeecCCCcccCeEECCCCCEEEEEEcCC-CceEEEEEECCCCc-eE-eccCC--C
Confidence 999987642 2333322 1112356999999999987653 45799999987765 33 33333 2
Q ss_pred eeeeEEEecCC-EEEEEEEeCCe---EEEEEEECCCCceeeecccCCeeEEEeeccc
Q 003878 408 VLESATAVNLN-QMIVSYLSDVK---YVLQIRDLKNGSLLHQLPIEIGSVNAISARR 460 (789)
Q Consensus 408 ~i~~v~~~~~~-~lv~~~~~~g~---~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~ 460 (789)
....+.|++++ .+++.....+. ..|+++++++++. +.++. .+.+..++|+|
T Consensus 378 ~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 378 LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PGDASDPAWSP 432 (435)
T ss_pred CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccC-CCCccCcccCC
Confidence 35678888864 45555554544 5899999985544 56653 33444555554
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-15 Score=169.95 Aligned_cols=259 Identities=15% Similarity=0.103 Sum_probs=170.0
Q ss_pred CEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCce
Q 003878 91 NKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV 170 (789)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~ 170 (789)
.++.|....++ ...||+.+..+...+.++..+. .+..++|||||++|||+....+ ..+|+++|+.+|+.
T Consensus 164 ~~iayv~~~~~--~~~L~~~D~dG~~~~~l~~~~~-------~v~~p~wSPDG~~la~~s~~~~--~~~I~~~dl~~g~~ 232 (427)
T PRK02889 164 TRIAYVIKTGN--RYQLQISDADGQNAQSALSSPE-------PIISPAWSPDGTKLAYVSFESK--KPVVYVHDLATGRR 232 (427)
T ss_pred cEEEEEEccCC--ccEEEEECCCCCCceEeccCCC-------CcccceEcCCCCEEEEEEccCC--CcEEEEEECCCCCE
Confidence 46666664433 3458887753334455554332 2567899999999999876544 46899999999965
Q ss_pred ecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEE
Q 003878 171 EADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFF 250 (789)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~ 250 (789)
.. +....+ ....++|||||+.|+
T Consensus 233 ~~--l~~~~g-------------------------------------------------------~~~~~~~SPDG~~la 255 (427)
T PRK02889 233 RV--VANFKG-------------------------------------------------------SNSAPAWSPDGRTLA 255 (427)
T ss_pred EE--eecCCC-------------------------------------------------------CccceEECCCCCEEE
Confidence 43 211100 136799999999999
Q ss_pred EEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEE
Q 003878 251 YSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYY 330 (789)
Q Consensus 251 y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~ 330 (789)
|+.... ...+||..++.++.. ..+... ......+.|||||++|++.+.+.. ...||.
T Consensus 256 ~~~~~~----------------g~~~Iy~~d~~~~~~--~~lt~~---~~~~~~~~wSpDG~~l~f~s~~~g--~~~Iy~ 312 (427)
T PRK02889 256 VALSRD----------------GNSQIYTVNADGSGL--RRLTQS---SGIDTEPFFSPDGRSIYFTSDRGG--APQIYR 312 (427)
T ss_pred EEEccC----------------CCceEEEEECCCCCc--EECCCC---CCCCcCeEEcCCCCEEEEEecCCC--CcEEEE
Confidence 975422 235689888865432 222221 112235789999999999865433 467999
Q ss_pred EECCCCCCCcccccccCCCCccEeeec-cccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCcee
Q 003878 331 CDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVL 409 (789)
Q Consensus 331 ~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i 409 (789)
+++.++. ...++. +.....+.|||||+.|++.++.+ ..++|+++|+.+++ .+.++... ..
T Consensus 313 ~~~~~g~--------------~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~-g~~~I~v~d~~~g~-~~~lt~~~---~~ 373 (427)
T PRK02889 313 MPASGGA--------------AQRVTFTGSYNTSPRISPDGKLLAYISRVG-GAFKLYVQDLATGQ-VTALTDTT---RD 373 (427)
T ss_pred EECCCCc--------------eEEEecCCCCcCceEECCCCCEEEEEEccC-CcEEEEEEECCCCC-eEEccCCC---Cc
Confidence 9987642 122221 11112356999999999888764 45799999998876 55554332 23
Q ss_pred eeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeeccc
Q 003878 410 ESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR 460 (789)
Q Consensus 410 ~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~ 460 (789)
..+.|+++ ..+++.....+...|++++++ |+..+.+..+.+.+..++|+|
T Consensus 374 ~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 374 ESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred cCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecCCCCCCCCccCC
Confidence 56788875 457777777788899999996 665566766666666666665
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-15 Score=167.46 Aligned_cols=252 Identities=12% Similarity=0.076 Sum_probs=165.0
Q ss_pred EEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcE-EEEEEecCCceEEEEEEEEcCCCce
Q 003878 92 KYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKY-LAYALSYSGSDWATIKLMRIEDQIV 170 (789)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~-la~~~~~~g~~~~~i~v~dl~tg~~ 170 (789)
..|+.+..+. ....||+.+......++++... ....+.|||||++ ++|+.. .++ ..+||++|+.+|+.
T Consensus 157 ~~~v~~~~~~-~~~~l~~~d~dg~~~~~~~~~~--------~~~~p~wSpDG~~~i~y~s~-~~~-~~~Iyv~dl~tg~~ 225 (419)
T PRK04043 157 KVVFSKYTGP-KKSNIVLADYTLTYQKVIVKGG--------LNIFPKWANKEQTAFYYTSY-GER-KPTLYKYNLYTGKK 225 (419)
T ss_pred EEEEEEccCC-CcceEEEECCCCCceeEEccCC--------CeEeEEECCCCCcEEEEEEc-cCC-CCEEEEEECCCCcE
Confidence 3444443433 3567999886545556555432 2457899999997 555443 332 35999999999976
Q ss_pred ecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEE
Q 003878 171 EADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFF 250 (789)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~ 250 (789)
.... ...+ ....+.|||||+.|+
T Consensus 226 ~~lt--~~~g-------------------------------------------------------~~~~~~~SPDG~~la 248 (419)
T PRK04043 226 EKIA--SSQG-------------------------------------------------------MLVVSDVSKDGSKLL 248 (419)
T ss_pred EEEe--cCCC-------------------------------------------------------cEEeeEECCCCCEEE
Confidence 5422 1100 134688999999999
Q ss_pred EEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEE
Q 003878 251 YSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYY 330 (789)
Q Consensus 251 y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~ 330 (789)
|+.... ...+||++++.++.. ..+...+. ....+.|||||++|+|.+.+.. ..+||+
T Consensus 249 ~~~~~~----------------g~~~Iy~~dl~~g~~--~~LT~~~~---~d~~p~~SPDG~~I~F~Sdr~g--~~~Iy~ 305 (419)
T PRK04043 249 LTMAPK----------------GQPDIYLYDTNTKTL--TQITNYPG---IDVNGNFVEDDKRIVFVSDRLG--YPNIFM 305 (419)
T ss_pred EEEccC----------------CCcEEEEEECCCCcE--EEcccCCC---ccCccEECCCCCEEEEEECCCC--CceEEE
Confidence 986432 245799999876543 23333221 1235789999999999986544 578999
Q ss_pred EECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCC-----CCceEEEEECCCCCCeEEeccCCC
Q 003878 331 CDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDA-----PKYKIIRVDLKEPNDWFEVIPEAE 405 (789)
Q Consensus 331 ~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~-----~~~~L~~~dl~~~~~~~~l~~~~~ 405 (789)
+|++++. ..+++.... ....|||||+.|++.++... ..++|+++|+++++ ++.|+...
T Consensus 306 ~dl~~g~--------------~~rlt~~g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~-~~~LT~~~- 368 (419)
T PRK04043 306 KKLNSGS--------------VEQVVFHGK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY-IRRLTANG- 368 (419)
T ss_pred EECCCCC--------------eEeCccCCC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-eEECCCCC-
Confidence 9998753 222332211 12469999999999887542 23799999999886 66676543
Q ss_pred CceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEE
Q 003878 406 RDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVN 454 (789)
Q Consensus 406 ~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~ 454 (789)
......|++|+ .+++.....+...|++++++ |.....++...+.+.
T Consensus 369 --~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~~g~~~ 415 (419)
T PRK04043 369 --VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFPLKVGKIQ 415 (419)
T ss_pred --CcCCeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEeecCCCccC
Confidence 23357788764 56677666677789999998 654456665445443
|
|
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-17 Score=167.66 Aligned_cols=205 Identities=16% Similarity=0.181 Sum_probs=138.8
Q ss_pred EEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCC-CChhHHhc--ccc----cC
Q 003878 522 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGE-YGEEWHKG--GAL----AK 594 (789)
Q Consensus 522 i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~-~g~~~~~~--~~~----~~ 594 (789)
|.+++..|++. ++.|.||++|+.+|.. .+...+...|+++||.|++||+-++.. ......+. ... ..
T Consensus 1 ~~ay~~~P~~~---~~~~~Vvv~~d~~G~~---~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~ 74 (218)
T PF01738_consen 1 IDAYVARPEGG---GPRPAVVVIHDIFGLN---PNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPR 74 (218)
T ss_dssp EEEEEEEETTS---SSEEEEEEE-BTTBS----HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHS
T ss_pred CeEEEEeCCCC---CCCCEEEEEcCCCCCc---hHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhh
Confidence 56889999873 6899999999998875 222234556667999999999765554 11111111 000 11
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCC
Q 003878 595 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCS 674 (789)
Q Consensus 595 ~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p 674 (789)
......|+.+++++|.+++.++++||+++|+|+||.++..++.+. +.++|+|+..|.. . +
T Consensus 75 ~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~--------~-----------~ 134 (218)
T PF01738_consen 75 PEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGS--------P-----------P 134 (218)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SS--------S-----------G
T ss_pred HHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCC--------C-----------C
Confidence 224568889999999999878999999999999999999988876 6899999888800 0 0
Q ss_pred CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEe
Q 003878 675 EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIE 754 (789)
Q Consensus 675 ~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~ 754 (789)
..+ .....++ .+|+|+++|++|+.++.++..++.++|++. +.++++++|
T Consensus 135 ~~~-----------~~~~~~~----------~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~----------~~~~~~~~y 183 (218)
T PF01738_consen 135 PPP-----------LEDAPKI----------KAPVLILFGENDPFFPPEEVEALEEALKAA----------GVDVEVHVY 183 (218)
T ss_dssp GGH-----------HHHGGG------------S-EEEEEETT-TTS-HHHHHHHHHHHHCT----------TTTEEEEEE
T ss_pred Ccc-----------hhhhccc----------CCCEeecCccCCCCCChHHHHHHHHHHHhc----------CCcEEEEEC
Confidence 000 0111122 579999999999999999999999999887 899999999
Q ss_pred CCCCcCCCCchh------hHHHHHHHHHHHHHHHh
Q 003878 755 RKAGHGVGLPTQ------KMIDEAADRYGFMAKML 783 (789)
Q Consensus 755 ~~~gH~~~~~~~------~~~~~~~~~~~fl~~~l 783 (789)
++++|+|..+.. ...+.++++++||.++|
T Consensus 184 ~ga~HgF~~~~~~~~~~~aa~~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 184 PGAGHGFANPSRPPYDPAAAEDAWQRTLAFFKRHL 218 (218)
T ss_dssp TT--TTTTSTTSTT--HHHHHHHHHHHHHHHCC--
T ss_pred CCCcccccCCCCcccCHHHHHHHHHHHHHHHHhcC
Confidence 999999865332 23456677888888765
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.6e-15 Score=166.97 Aligned_cols=260 Identities=12% Similarity=0.072 Sum_probs=170.0
Q ss_pred EeEEeCCCCcEEEEEEecCCce----EEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccc
Q 003878 135 IKVSVSEDAKYLAYALSYSGSD----WATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 135 ~~~~~SpDg~~la~~~~~~g~~----~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
+...++ +++|||++...+.+ .+.||++|.+++...+.+-...
T Consensus 140 g~~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~-------------------------------- 185 (428)
T PRK01029 140 GVPGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHS-------------------------------- 185 (428)
T ss_pred CCCccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCC--------------------------------
Confidence 334455 89999999765422 5799999998886543221111
Q ss_pred ceeeEEEeeeccccceeeeeeecccccceEEEEeCCcE--EEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKG--FFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE 288 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~--i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~ 288 (789)
...+++|||||++ |+|++... ...+||++++.++...
T Consensus 186 -------------------------~~~sP~wSPDG~~~~~~y~S~~~----------------g~~~I~~~~l~~g~~~ 224 (428)
T PRK01029 186 -------------------------LSITPTWMHIGSGFPYLYVSYKL----------------GVPKIFLGSLENPAGK 224 (428)
T ss_pred -------------------------CcccceEccCCCceEEEEEEccC----------------CCceEEEEECCCCCce
Confidence 1368999999988 55675532 2357999999876543
Q ss_pred cEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEE--ECCCCCCCcccccccCCCCccEeeeccc-c-ceeE
Q 003878 289 DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYC--DLSALPEGLEGFKKRDGLLPFVKLIDGF-D-AQYE 364 (789)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~--d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~ 364 (789)
.+...+.. ...+.|||||++|++...... ..++|+. +++++.. .....++.+. . ...+
T Consensus 225 --~lt~~~g~---~~~p~wSPDG~~Laf~s~~~g--~~di~~~~~~~~~g~~-----------g~~~~lt~~~~~~~~~p 286 (428)
T PRK01029 225 --KILALQGN---QLMPTFSPRKKLLAFISDRYG--NPDLFIQSFSLETGAI-----------GKPRRLLNEAFGTQGNP 286 (428)
T ss_pred --EeecCCCC---ccceEECCCCCEEEEEECCCC--CcceeEEEeecccCCC-----------CcceEeecCCCCCcCCe
Confidence 33332221 236899999999999875433 3467774 5554211 1123344321 1 1235
Q ss_pred EEecCCCEEEEEECCCCCCceEEEEECCCC-CCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCce
Q 003878 365 VIANDDTVFTFLTNKDAPKYKIIRVDLKEP-NDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~-~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
.|+|||+.|+|.++++ +..+|+.++++.. ...+.+.... .......|+++ +.+++....++..+|+++|+++|+.
T Consensus 287 ~wSPDG~~Laf~s~~~-g~~~ly~~~~~~~g~~~~~lt~~~--~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 287 SFSPDGTRLVFVSNKD-GRPRIYIMQIDPEGQSPRLLTKKY--RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD 363 (428)
T ss_pred EECCCCCEEEEEECCC-CCceEEEEECcccccceEEeccCC--CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence 6999999999998865 4568999988642 2234444332 23456778885 4577766666777999999997776
Q ss_pred eeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEee
Q 003878 443 LHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFR 494 (789)
Q Consensus 443 ~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~ 494 (789)
+.++.....+..++++||++.++|+... .....+|.+|+.+++ .+.+.
T Consensus 364 -~~Lt~~~~~~~~p~wSpDG~~L~f~~~~-~g~~~L~~vdl~~g~--~~~Lt 411 (428)
T PRK01029 364 -YQLTTSPENKESPSWAIDSLHLVYSAGN-SNESELYLISLITKK--TRKIV 411 (428)
T ss_pred -EEccCCCCCccceEECCCCCEEEEEECC-CCCceEEEEECCCCC--EEEee
Confidence 6666444445567899999998887654 345789999998884 44444
|
|
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-15 Score=165.05 Aligned_cols=228 Identities=19% Similarity=0.201 Sum_probs=162.0
Q ss_pred ecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCC-HHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccc
Q 003878 514 PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFS-VSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 592 (789)
Q Consensus 514 ~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~-~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~ 592 (789)
....+ ..|++.+|.| .....++.|+|||+|||.......... ..+..++...|++|+.+|||-..+.
T Consensus 57 ~~~~~-~~~~~~~y~p-~~~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~---------- 124 (312)
T COG0657 57 AGPSG-DGVPVRVYRP-DRKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH---------- 124 (312)
T ss_pred cCCCC-CceeEEEECC-CCCCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC----------
Confidence 34566 6799999999 323456789999999997766655444 4556677779999999999987763
Q ss_pred cCCcchHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhCCC----ceeEEEecCCcccccccccccCCc
Q 003878 593 AKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQRPD----LFGCALAHVGVMDMLRYHKFTIGH 665 (789)
Q Consensus 593 ~~~~~~~~D~~~~~~~L~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~pd----~f~a~v~~~p~~d~~~~~~~~~~~ 665 (789)
.....++|+.+++.|+.++. -.||++|+++|+|+||.|++.++.+..+ ..++.+..+|.+|... .. . .
T Consensus 125 -~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~-~~-~--~ 199 (312)
T COG0657 125 -PFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS-SA-A--S 199 (312)
T ss_pred -CCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc-cc-c--c
Confidence 34567899999999999874 4799999999999999999988776443 5788999999999875 10 0 0
Q ss_pred cchhhcCC--CCcHHHH--HHHH------------hcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHH
Q 003878 666 AWVSDFGC--SEEEEEF--YWLI------------KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLL 729 (789)
Q Consensus 666 ~~~~e~g~--p~~~~~~--~~l~------------~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~ 729 (789)
..+++. .-..... .... ..+|+.... . ...||+++++|+.|...+ ++..+.
T Consensus 200 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~spl~~~~-~--------~~lPP~~i~~a~~D~l~~--~~~~~a 266 (312)
T COG0657 200 --LPGYGEADLLDAAAILAWFADLYLGAAPDREDPEASPLASDD-L--------SGLPPTLIQTAEFDPLRD--EGEAYA 266 (312)
T ss_pred --hhhcCCccccCHHHHHHHHHHHhCcCccccCCCccCcccccc-c--------cCCCCEEEEecCCCcchh--HHHHHH
Confidence 011111 1010000 0111 123433322 1 126899999999999988 999999
Q ss_pred HHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCch-hhHHHHHHHHHHHHHH
Q 003878 730 ATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT-QKMIDEAADRYGFMAK 781 (789)
Q Consensus 730 ~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~-~~~~~~~~~~~~fl~~ 781 (789)
++|+++ |.++++..+++..|++.... ....+....+..|+..
T Consensus 267 ~~L~~a----------gv~~~~~~~~g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 267 ERLRAA----------GVPVELRVYPGMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred HHHHHc----------CCeEEEEEeCCcceeccccCcHHHHHHHHHHHHHHHH
Confidence 999998 99999999999999884322 2234445666677663
|
|
| >COG1647 Esterase/lipase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=153.28 Aligned_cols=217 Identities=15% Similarity=0.182 Sum_probs=157.9
Q ss_pred cCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHH
Q 003878 529 KKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEY 608 (789)
Q Consensus 529 p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~ 608 (789)
|+.+...+.+-.||++||--|++.+-. .....|+++||.|.+|+++|.|.-++.+-+.+..+| ++|+.++.++
T Consensus 6 p~pf~f~~G~~AVLllHGFTGt~~Dvr---~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~ 78 (243)
T COG1647 6 PKPFTFEGGNRAVLLLHGFTGTPRDVR---MLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRD 78 (243)
T ss_pred CCCeeeccCCEEEEEEeccCCCcHHHH---HHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHH
Confidence 443333344589999999777654433 345678889999999999999998888877766666 7899999999
Q ss_pred HHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc-ccCCccch---hhcCCCCcHHHHHHHH
Q 003878 609 LISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK-FTIGHAWV---SDFGCSEEEEEFYWLI 684 (789)
Q Consensus 609 L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~-~~~~~~~~---~e~g~p~~~~~~~~l~ 684 (789)
|.++|| +.|+|.|.|+||.+++.++.++| .+++|..++-+.+..-.. ....-.|. ..|-.+..+..-+.|+
T Consensus 79 L~~~gy---~eI~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~~ 153 (243)
T COG1647 79 LKEAGY---DEIAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEMK 153 (243)
T ss_pred HHHcCC---CeEEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHHH
Confidence 999998 57999999999999999999998 677777666555322211 01001121 2233333333334455
Q ss_pred hcC--cc--------------cCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCc
Q 003878 685 KYS--PL--------------HNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNP 748 (789)
Q Consensus 685 ~~s--P~--------------~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 748 (789)
+|. |. .+++.+ +-|+|++.|.+|+.||.+.+..++..+.. .+
T Consensus 154 ~~~~~~~~~~~~~~~~i~~~~~~~~~I----------~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s------------~~ 211 (243)
T COG1647 154 SYKDTPMTTTAQLKKLIKDARRSLDKI----------YSPTLVVQGRQDEMVPAESANFIYDHVES------------DD 211 (243)
T ss_pred HhhcchHHHHHHHHHHHHHHHhhhhhc----------ccchhheecccCCCCCHHHHHHHHHhccC------------Cc
Confidence 554 21 344455 78999999999999999999999888763 46
Q ss_pred EEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 749 IIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 749 ~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
.+|..+.++||.+..+..+ ....+.++.||+
T Consensus 212 KeL~~~e~SgHVIt~D~Er-d~v~e~V~~FL~ 242 (243)
T COG1647 212 KELKWLEGSGHVITLDKER-DQVEEDVITFLE 242 (243)
T ss_pred ceeEEEccCCceeecchhH-HHHHHHHHHHhh
Confidence 6899999999999877664 677788999986
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.9e-15 Score=165.58 Aligned_cols=261 Identities=16% Similarity=0.154 Sum_probs=171.0
Q ss_pred CEEEEEEEcC--CCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCC
Q 003878 91 NKYFYFHNTG--LQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ 168 (789)
Q Consensus 91 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg 168 (789)
.++.|....+ ....+.||+.+..+++.+.++..+. .+..++|||||++|||+....+ ..+|+++|+.+|
T Consensus 163 ~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~-------~~~~p~wSpDG~~la~~s~~~~--~~~l~~~~l~~g 233 (430)
T PRK00178 163 TRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSRE-------PILSPRWSPDGKRIAYVSFEQK--RPRIFVQNLDTG 233 (430)
T ss_pred eeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCC-------ceeeeeECCCCCEEEEEEcCCC--CCEEEEEECCCC
Confidence 4566655433 2345678887765455556554432 2578899999999999876544 468999999998
Q ss_pred ceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcE
Q 003878 169 IVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKG 248 (789)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~ 248 (789)
+... +....+ ....++|||||+.
T Consensus 234 ~~~~--l~~~~g-------------------------------------------------------~~~~~~~SpDG~~ 256 (430)
T PRK00178 234 RREQ--ITNFEG-------------------------------------------------------LNGAPAWSPDGSK 256 (430)
T ss_pred CEEE--ccCCCC-------------------------------------------------------CcCCeEECCCCCE
Confidence 6543 222100 1357999999999
Q ss_pred EEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEE
Q 003878 249 FFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKV 328 (789)
Q Consensus 249 i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i 328 (789)
|+|+.... ...+||++++.++... .+.... .....+.|||||++|++.+.+.. ...|
T Consensus 257 la~~~~~~----------------g~~~Iy~~d~~~~~~~--~lt~~~---~~~~~~~~spDg~~i~f~s~~~g--~~~i 313 (430)
T PRK00178 257 LAFVLSKD----------------GNPEIYVMDLASRQLS--RVTNHP---AIDTEPFWGKDGRTLYFTSDRGG--KPQI 313 (430)
T ss_pred EEEEEccC----------------CCceEEEEECCCCCeE--EcccCC---CCcCCeEECCCCCEEEEEECCCC--CceE
Confidence 99986432 2357999998875432 233222 12235789999999999875433 4679
Q ss_pred EEEECCCCCCCcccccccCCCCccEeeec-cccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCc
Q 003878 329 YYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERD 407 (789)
Q Consensus 329 ~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~ 407 (789)
|++++.++. ...++. +.....+.|+|||+.+++.+..+ ..++|+++|+++++ .+.+.....
T Consensus 314 y~~d~~~g~--------------~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~-~~~~l~~~dl~tg~-~~~lt~~~~-- 375 (430)
T PRK00178 314 YKVNVNGGR--------------AERVTFVGNYNARPRLSADGKTLVMVHRQD-GNFHVAAQDLQRGS-VRILTDTSL-- 375 (430)
T ss_pred EEEECCCCC--------------EEEeecCCCCccceEECCCCCEEEEEEccC-CceEEEEEECCCCC-EEEccCCCC--
Confidence 999998752 222322 11112356999999999988754 46789999999876 455543221
Q ss_pred eeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeeccc
Q 003878 408 VLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR 460 (789)
Q Consensus 408 ~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~ 460 (789)
.....|+++ ..+++....++...|++++++ |...+.++.+.+.+..++|++
T Consensus 376 -~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 376 -DESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred -CCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 234567775 456676777778899999997 554456665556565556654
|
|
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-15 Score=155.21 Aligned_cols=216 Identities=18% Similarity=0.216 Sum_probs=160.4
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecC--CCCC--C-
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRG--GGEY--G- 583 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG--~g~~--g- 583 (789)
+.+.+++.| .++++++.+|++. ++.|.||.+|+-+|... ... .....|+++||++++||+=+ +... +
T Consensus 3 ~~v~~~~~~--~~~~~~~a~P~~~---~~~P~VIv~hei~Gl~~--~i~-~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~ 74 (236)
T COG0412 3 TDVTIPAPD--GELPAYLARPAGA---GGFPGVIVLHEIFGLNP--HIR-DVARRLAKAGYVVLAPDLYGRQGDPTDIED 74 (236)
T ss_pred cceEeeCCC--ceEeEEEecCCcC---CCCCEEEEEecccCCch--HHH-HHHHHHHhCCcEEEechhhccCCCCCcccc
Confidence 345666655 5999999999973 44499999999988643 333 34556667999999999754 2211 1
Q ss_pred -hhHHhcc--cccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc
Q 003878 584 -EEWHKGG--ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK 660 (789)
Q Consensus 584 -~~~~~~~--~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~ 660 (789)
......+ ..........|+.++++||..++.++++||+++|+|+||.+++.++.+.| .++|+|+..|..-
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~------ 147 (236)
T COG0412 75 EPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLI------ 147 (236)
T ss_pred cHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCC------
Confidence 1122221 01111456899999999999999899999999999999999999999977 7899988777321
Q ss_pred ccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCC
Q 003878 661 FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSL 740 (789)
Q Consensus 661 ~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~ 740 (789)
... + ....++ ..|+|+.+|..|+.+|.....++.+++.+.
T Consensus 148 ----~~~------~---------------~~~~~~----------~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~----- 187 (236)
T COG0412 148 ----ADD------T---------------ADAPKI----------KVPVLLHLAGEDPYIPAADVDALAAALEDA----- 187 (236)
T ss_pred ----CCc------c---------------cccccc----------cCcEEEEecccCCCCChhHHHHHHHHHHhc-----
Confidence 000 0 012233 689999999999999999999999999987
Q ss_pred CCCCCCCcEEEEEeCCCCcCCCCch---------hhHHHHHHHHHHHHHHHhC
Q 003878 741 ENSPQTNPIIGRIERKAGHGVGLPT---------QKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 741 ~~~~~~~~~~l~~~~~~gH~~~~~~---------~~~~~~~~~~~~fl~~~l~ 784 (789)
+..+.+.+|+++.|+|..+. ....+...++++||.++++
T Consensus 188 -----~~~~~~~~y~ga~H~F~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 188 -----GVKVDLEIYPGAGHGFANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred -----CCCeeEEEeCCCccccccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 77899999999999987542 1234567789999998876
|
|
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-15 Score=160.05 Aligned_cols=233 Identities=12% Similarity=0.086 Sum_probs=150.0
Q ss_pred EecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccc
Q 003878 513 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 592 (789)
Q Consensus 513 ~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~ 592 (789)
+.+.|| .++++.++.|.+ .+.|+|+++||..+. ...|.. ....|.++||.|+++|.||.|..... . ...
T Consensus 5 ~~~~~g-~~l~~~~~~~~~----~~~~~v~llHG~~~~--~~~~~~-~~~~l~~~g~~via~D~~G~G~S~~~--~-~~~ 73 (276)
T PHA02857 5 MFNLDN-DYIYCKYWKPIT----YPKALVFISHGAGEH--SGRYEE-LAENISSLGILVFSHDHIGHGRSNGE--K-MMI 73 (276)
T ss_pred eecCCC-CEEEEEeccCCC----CCCEEEEEeCCCccc--cchHHH-HHHHHHhCCCEEEEccCCCCCCCCCc--c-CCc
Confidence 345699 999999997752 456899999996543 334443 34556558999999999998864321 0 000
Q ss_pred cCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc--------------
Q 003878 593 AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY-------------- 658 (789)
Q Consensus 593 ~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~-------------- 658 (789)
..-...++|++..++++... + ...+++++|+|+||.+++.++.++|++++++|+.+|..+....
T Consensus 74 ~~~~~~~~d~~~~l~~~~~~-~-~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~ 151 (276)
T PHA02857 74 DDFGVYVRDVVQHVVTIKST-Y-PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIF 151 (276)
T ss_pred CCHHHHHHHHHHHHHHHHhh-C-CCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHh
Confidence 11112357777777776654 2 2357999999999999999999999999999999997653211
Q ss_pred ccccCCccchhhcCCCCcHHHHHHHHhcCcc----------------------cCCCCCCCCCCCCCCCCCeEEEEecCC
Q 003878 659 HKFTIGHAWVSDFGCSEEEEEFYWLIKYSPL----------------------HNVRRPWEQNPDKPFQYPSTLLLTADH 716 (789)
Q Consensus 659 ~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~----------------------~~v~~~~~~~~~~~~~~pp~Li~~g~~ 716 (789)
........+...+-.....+.. ...++|+ ..+.++ ..|+|+++|++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~Pvliv~G~~ 219 (276)
T PHA02857 152 YPNKIVGKLCPESVSRDMDEVY--KYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKI----------KTPILILQGTN 219 (276)
T ss_pred CCCCccCCCCHhhccCCHHHHH--HHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccC----------CCCEEEEecCC
Confidence 0000000000000000000000 0011111 123333 68999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhh-HHHHHHHHHHHHHHHh
Q 003878 717 DDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQK-MIDEAADRYGFMAKML 783 (789)
Q Consensus 717 D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~-~~~~~~~~~~fl~~~l 783 (789)
|..||+..+.++.+.+.. .+++.+++++||........ +.+.++++.+||..+.
T Consensus 220 D~i~~~~~~~~l~~~~~~-------------~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~~ 274 (276)
T PHA02857 220 NEISDVSGAYYFMQHANC-------------NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNRV 274 (276)
T ss_pred CCcCChHHHHHHHHHccC-------------CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHhc
Confidence 999999999888776531 35889999999987654332 4567889999998864
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-14 Score=163.65 Aligned_cols=262 Identities=16% Similarity=0.119 Sum_probs=170.8
Q ss_pred CCEEEEEEEcCC--CCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCC
Q 003878 90 GNKYFYFHNTGL--QPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED 167 (789)
Q Consensus 90 g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~t 167 (789)
+.++.|....+. .....||+.+...++.+.|+..+ ..+.+++|||||++|||+....+ ..+|+++|+.+
T Consensus 167 ~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~-------~~v~~p~wSpDg~~la~~s~~~~--~~~l~~~dl~~ 237 (433)
T PRK04922 167 WTRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSA-------EPILSPAWSPDGKKLAYVSFERG--RSAIYVQDLAT 237 (433)
T ss_pred cceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCC-------CccccccCCCCCCEEEEEecCCC--CcEEEEEECCC
Confidence 346777665432 23467888875444455665433 23568899999999999875444 57899999999
Q ss_pred CceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCc
Q 003878 168 QIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSK 247 (789)
Q Consensus 168 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~ 247 (789)
|+... +....+ ....++|||||+
T Consensus 238 g~~~~--l~~~~g-------------------------------------------------------~~~~~~~SpDG~ 260 (433)
T PRK04922 238 GQREL--VASFRG-------------------------------------------------------INGAPSFSPDGR 260 (433)
T ss_pred CCEEE--eccCCC-------------------------------------------------------CccCceECCCCC
Confidence 86543 221100 135789999999
Q ss_pred EEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceE
Q 003878 248 GFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNK 327 (789)
Q Consensus 248 ~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~ 327 (789)
.|+|+.... ...+||++++.++... .+.... .....+.|||||++|++.+.+.. ...
T Consensus 261 ~l~~~~s~~----------------g~~~Iy~~d~~~g~~~--~lt~~~---~~~~~~~~spDG~~l~f~sd~~g--~~~ 317 (433)
T PRK04922 261 RLALTLSRD----------------GNPEIYVMDLGSRQLT--RLTNHF---GIDTEPTWAPDGKSIYFTSDRGG--RPQ 317 (433)
T ss_pred EEEEEEeCC----------------CCceEEEEECCCCCeE--ECccCC---CCccceEECCCCCEEEEEECCCC--Cce
Confidence 999885422 2357999999776432 222221 11236799999999999875443 467
Q ss_pred EEEEECCCCCCCcccccccCCCCccEeeec-cccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCC
Q 003878 328 VYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAER 406 (789)
Q Consensus 328 i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~ 406 (789)
||++++.++. ...++. +.....+.|+|||+.|++.+.. ...++|+++|+.+++ .+.+....
T Consensus 318 iy~~dl~~g~--------------~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~-~~~Lt~~~-- 379 (433)
T PRK04922 318 IYRVAASGGS--------------AERLTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGS-VRTLTPGS-- 379 (433)
T ss_pred EEEEECCCCC--------------eEEeecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCC-eEECCCCC--
Confidence 9999987742 222322 1111235699999999998764 356799999998876 55554322
Q ss_pred ceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeeccc
Q 003878 407 DVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR 460 (789)
Q Consensus 407 ~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~ 460 (789)
....+.|++++ .+++.....+...|++++++ |...+.++.+.+.+..++|+|
T Consensus 380 -~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 380 -LDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccCC
Confidence 23456788754 46666666677899999997 554466765555555555554
|
|
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-15 Score=165.23 Aligned_cols=248 Identities=12% Similarity=0.040 Sum_probs=152.6
Q ss_pred CcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChh
Q 003878 506 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 585 (789)
Q Consensus 506 ~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~ 585 (789)
+..++..+...|| .+|.+....|.+ ..+.|+||++||..+.. ...|. .....|.++||.|+++|+||.|.....
T Consensus 59 ~~~~~~~~~~~~g-~~l~~~~~~p~~---~~~~~~iv~lHG~~~~~-~~~~~-~~~~~l~~~g~~v~~~D~~G~G~S~~~ 132 (349)
T PLN02385 59 IKTEESYEVNSRG-VEIFSKSWLPEN---SRPKAAVCFCHGYGDTC-TFFFE-GIARKIASSGYGVFAMDYPGFGLSEGL 132 (349)
T ss_pred cceeeeeEEcCCC-CEEEEEEEecCC---CCCCeEEEEECCCCCcc-chHHH-HHHHHHHhCCCEEEEecCCCCCCCCCC
Confidence 4444555666799 999998888864 24568999999964432 21222 234455558999999999998754311
Q ss_pred HHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc------
Q 003878 586 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH------ 659 (789)
Q Consensus 586 ~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~------ 659 (789)
.+....-..-.+|+.+.++.+......++.++.++|||+||.+++.++.++|++++++|+.+|+..+....
T Consensus 133 ---~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~ 209 (349)
T PLN02385 133 ---HGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLV 209 (349)
T ss_pred ---CCCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHH
Confidence 00000111224566666666654433345689999999999999999999999999999998865421110
Q ss_pred -----------ccc-C-Cccchhh--cCCCC-----------------cHHHHHHHHhcCc-ccCCCCCCCCCCCCCCCC
Q 003878 660 -----------KFT-I-GHAWVSD--FGCSE-----------------EEEEFYWLIKYSP-LHNVRRPWEQNPDKPFQY 706 (789)
Q Consensus 660 -----------~~~-~-~~~~~~e--~g~p~-----------------~~~~~~~l~~~sP-~~~v~~~~~~~~~~~~~~ 706 (789)
+.. . ......+ +.++. -....+.+..... ...+.++ .
T Consensus 210 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i----------~ 279 (349)
T PLN02385 210 LQILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEV----------S 279 (349)
T ss_pred HHHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccC----------C
Confidence 000 0 0000000 00000 0000111111100 1122333 6
Q ss_pred CeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhh--HHHHHHHHHHHHHHHhC
Q 003878 707 PSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQK--MIDEAADRYGFMAKMLG 784 (789)
Q Consensus 707 pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~--~~~~~~~~~~fl~~~l~ 784 (789)
.|+|++||++|..||+..+.++++++.. ...++++++++||........ ....+..+.+||.+++.
T Consensus 280 ~P~Lii~G~~D~vv~~~~~~~l~~~~~~------------~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~~ 347 (349)
T PLN02385 280 LPLLILHGEADKVTDPSVSKFLYEKASS------------SDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHST 347 (349)
T ss_pred CCEEEEEeCCCCccChHHHHHHHHHcCC------------CCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999998877642 235788999999987533222 23467889999998863
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-14 Score=158.84 Aligned_cols=203 Identities=12% Similarity=0.148 Sum_probs=140.8
Q ss_pred ceEEEEeCCcE-EEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 238 SSIAWTHDSKG-FFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 238 ~~~~wspDg~~-i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
.++.|||||++ ++|+.... +..+||++++.++.. ..+...+ .....+.|||||++|++
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~----------------~~~~Iyv~dl~tg~~--~~lt~~~---g~~~~~~~SPDG~~la~ 249 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGE----------------RKPTLYKYNLYTGKK--EKIASSQ---GMLVVSDVSKDGSKLLL 249 (419)
T ss_pred EeEEECCCCCcEEEEEEccC----------------CCCEEEEEECCCCcE--EEEecCC---CcEEeeEECCCCCEEEE
Confidence 68999999996 77775531 234799999977643 3444322 22345789999999999
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
...... ..+||+++++++. ..+++.... ...+.|+|||+.|+|.+++. +..+||++|+++++
T Consensus 250 ~~~~~g--~~~Iy~~dl~~g~--------------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~-g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 250 TMAPKG--QPDIYLYDTNTKT--------------LTQITNYPGIDVNGNFVEDDKRIVFVSDRL-GYPNIFMKKLNSGS 312 (419)
T ss_pred EEccCC--CcEEEEEECCCCc--------------EEEcccCCCccCccEECCCCCEEEEEECCC-CCceEEEEECCCCC
Confidence 876543 6789999998752 334443221 22356999999999999885 45799999999887
Q ss_pred CeEEeccCCCCceeeeEEEecC-CEEEEEEEeC------CeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEE
Q 003878 396 DWFEVIPEAERDVLESATAVNL-NQMIVSYLSD------VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFIS 468 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~------g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~ 468 (789)
.+.++.... . ...|+++ +.+++..... +..+|+++|+++|+. +.|+.. +....++++|||+.++|+
T Consensus 313 -~~rlt~~g~-~---~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~ 385 (419)
T PRK04043 313 -VEQVVFHGK-N---NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFI 385 (419)
T ss_pred -eEeCccCCC-c---CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEE
Confidence 556654432 1 2367765 5566665543 336899999997765 677754 222357899999999888
Q ss_pred EcCCCCCcEEEEEECCCC
Q 003878 469 FTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 469 ~ss~~~P~~ly~~dl~tg 486 (789)
... ..-..++.++++..
T Consensus 386 ~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 386 KYL-GNQSALGIIRLNYN 402 (419)
T ss_pred Ecc-CCcEEEEEEecCCC
Confidence 654 44457899998765
|
|
| >PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=172.20 Aligned_cols=259 Identities=16% Similarity=0.157 Sum_probs=174.2
Q ss_pred CCCCCCCcEEEEEEecC-----CC-ceEEEEEEEecCCCCCCCCccEEEEEc----CCCCcc-----------C---CCC
Q 003878 500 GFDRSEFHVHQVFVPSK-----DG-STKIPMFIVSKKNIKLDGSHPCLLYGY----GGFNIS-----------V---TPS 555 (789)
Q Consensus 500 ~~~~~~~~~~~~~~~s~-----dg-~~~i~~~l~~p~~~~~~~~~P~ll~~h----Gg~~~~-----------~---~~~ 555 (789)
-|+...+..|.|++.+. || .-.|.+.|++|+....+-+.|+|+..- |.-... . .+.
T Consensus 162 ~~~~~~~ire~v~Vet~~Dtd~dg~~D~v~~~i~rP~~~~~g~k~p~i~~aspY~~g~~~~~~~~~~~~~~~~l~~~~~~ 241 (767)
T PRK05371 162 VFDTSQLIREVVYVETPVDTDQDGKLDLVKVTIVRPKETASGLKVPVIMTASPYYQGTNDVANDKKLHNVDVELYAKPPR 241 (767)
T ss_pred ccCcccceEEEEEEeCCCCCCCCCCcceEEEEEECCCccCCCCccceEEecCccccCCCCcccccccccCCccccccCCc
Confidence 47777777888888764 44 245888999998754334788887542 320000 0 000
Q ss_pred ---------------------C----CHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHH
Q 003878 556 ---------------------F----SVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLI 610 (789)
Q Consensus 556 ---------------------~----~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~ 610 (789)
| ......++..+||+|++.|.||.++.+..|.. ......+|..++++||.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rGYaVV~~D~RGtg~SeG~~~~-----~~~~E~~D~~~vIeWl~ 316 (767)
T PRK05371 242 AQFTPLKTQPRKLPVGPAEESFTHINSYSLNDYFLPRGFAVVYVSGIGTRGSDGCPTT-----GDYQEIESMKAVIDWLN 316 (767)
T ss_pred cccccccccccccCCCccchhhccCcchhHHHHHHhCCeEEEEEcCCCCCCCCCcCcc-----CCHHHHHHHHHHHHHHh
Confidence 0 11234566669999999999998876544422 23556799999999999
Q ss_pred Hc--CCCC------------CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccccc----CCccc-----
Q 003878 611 SA--GYTQ------------SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT----IGHAW----- 667 (789)
Q Consensus 611 ~~--~~~d------------~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~----~~~~~----- 667 (789)
.+ +++| ..||+++|.||||+++.++|+..|..++|+|+.+++.++..++... ....|
T Consensus 317 ~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~ 396 (767)
T PRK05371 317 GRATAYTDRTRGKEVKADWSNGKVAMTGKSYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDL 396 (767)
T ss_pred hCCccccccccccccccCCCCCeeEEEEEcHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcch
Confidence 54 2334 5799999999999999999998899999999999998875443110 00001
Q ss_pred --hhhcC-----CC----CcHHHH-------------------HHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCC
Q 003878 668 --VSDFG-----CS----EEEEEF-------------------YWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 717 (789)
Q Consensus 668 --~~e~g-----~p----~~~~~~-------------------~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D 717 (789)
..++. .+ ...+.+ +++.+.++..++.++ ..|+|++||.+|
T Consensus 397 d~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~fW~~rn~~~~~~kI----------kvPvLlIhGw~D 466 (767)
T PRK05371 397 DVLAELTYSRNLLAGDYLRHNEACEKLLAELTAAQDRKTGDYNDFWDDRNYLKDADKI----------KASVLVVHGLND 466 (767)
T ss_pred hhHHHHhhhcccCcchhhcchHHHHHHHhhhhhhhhhcCCCccHHHHhCCHhhHhhCC----------CCCEEEEeeCCC
Confidence 00000 00 000111 112333455555555 789999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 718 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 718 ~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
.+|++.++.+++++|++. +.+..|.+. ..+|....... ..+....+++||+++|+.
T Consensus 467 ~~V~~~~s~~ly~aL~~~----------g~pkkL~l~-~g~H~~~~~~~-~~d~~e~~~~Wfd~~LkG 522 (767)
T PRK05371 467 WNVKPKQVYQWWDALPEN----------GVPKKLFLH-QGGHVYPNNWQ-SIDFRDTMNAWFTHKLLG 522 (767)
T ss_pred CCCChHHHHHHHHHHHhc----------CCCeEEEEe-CCCccCCCchh-HHHHHHHHHHHHHhcccc
Confidence 999999999999999987 788888776 46797544333 357778899999999864
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.6e-14 Score=157.90 Aligned_cols=206 Identities=14% Similarity=0.143 Sum_probs=139.4
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+++|||||+.|+|+.... ...+++++++.++..+ .+...+.+ ...+.|||||++|++
T Consensus 201 ~~~p~wSPDG~~la~~s~~~----------------g~~~i~i~dl~~G~~~--~l~~~~~~---~~~~~~SPDG~~La~ 259 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFES----------------GRSALVIQTLANGAVR--QVASFPRH---NGAPAFSPDGSKLAF 259 (429)
T ss_pred eeeeEEcCCCCEEEEEEecC----------------CCcEEEEEECCCCCeE--EccCCCCC---cCCeEECCCCCEEEE
Confidence 47899999999999986432 2346999998765432 33322221 236899999999999
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
...... ..+||++|++++. ...++.+. ....+.|+|||+.|+|.++++ ...+||.+++++++
T Consensus 260 ~~~~~g--~~~I~~~d~~tg~--------------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~-g~~~Iy~~d~~~g~ 322 (429)
T PRK03629 260 ALSKTG--SLNLYVMDLASGQ--------------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQA-GRPQVYKVNINGGA 322 (429)
T ss_pred EEcCCC--CcEEEEEECCCCC--------------EEEccCCCCCcCceEECCCCCEEEEEeCCC-CCceEEEEECCCCC
Confidence 765432 4579999998752 23333321 223456999999999999875 35799999998876
Q ss_pred CeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCC
Q 003878 396 DWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLI 474 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~ 474 (789)
.+.+.... .....+.++++ +.+++....++..+|+++|+++|+. +.|+.. .....++++||++.++++... ..
T Consensus 323 -~~~lt~~~--~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~-~~~~~p~~SpDG~~i~~~s~~-~~ 396 (429)
T PRK03629 323 -PQRITWEG--SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDT-FLDETPSIAPNGTMVIYSSSQ-GM 396 (429)
T ss_pred -eEEeecCC--CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCC-CCCCCceECCCCCEEEEEEcC-CC
Confidence 45554333 23345677775 4566666666667899999987765 566633 223356789999988876653 23
Q ss_pred CcEEEEEECCCC
Q 003878 475 PGIVYQCNLKTE 486 (789)
Q Consensus 475 P~~ly~~dl~tg 486 (789)
...++.++++.+
T Consensus 397 ~~~l~~~~~~G~ 408 (429)
T PRK03629 397 GSVLNLVSTDGR 408 (429)
T ss_pred ceEEEEEECCCC
Confidence 456888888555
|
|
| >PRK11460 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.9e-15 Score=150.72 Aligned_cols=186 Identities=14% Similarity=0.130 Sum_probs=130.9
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCC----CCChhHHhcccccCCcch-------HHHHHH
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGG----EYGEEWHKGGALAKKQNC-------FDDFIS 604 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g----~~g~~~~~~~~~~~~~~~-------~~D~~~ 604 (789)
.+.|+||++||..++... +.. ....+...++.+.++.+||-. ..|..|.... .....+. .+.+.+
T Consensus 14 ~~~~~vIlLHG~G~~~~~--~~~-l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~-~~~~~~~~~~~~~~~~~l~~ 89 (232)
T PRK11460 14 PAQQLLLLFHGVGDNPVA--MGE-IGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQ-GITEDNRQARVAAIMPTFIE 89 (232)
T ss_pred CCCcEEEEEeCCCCChHH--HHH-HHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCC-CCCccchHHHHHHHHHHHHH
Confidence 457899999997655332 222 344555466655666666632 2356777532 1111121 234555
Q ss_pred HHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHH
Q 003878 605 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLI 684 (789)
Q Consensus 605 ~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~ 684 (789)
.++++.++..++++||+++|+|+||.+++.++.++|++++++|+..+.+. . .|.
T Consensus 90 ~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~---------------~--~~~--------- 143 (232)
T PRK11460 90 TVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYA---------------S--LPE--------- 143 (232)
T ss_pred HHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccc---------------c--ccc---------
Confidence 66777777667889999999999999999999899999888876655211 0 000
Q ss_pred hcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCc
Q 003878 685 KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP 764 (789)
Q Consensus 685 ~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~ 764 (789)
... ..+|+|++||.+|++||++.+.+++++|++. |.++++++++++||.+..
T Consensus 144 -------~~~----------~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~----------g~~~~~~~~~~~gH~i~~- 195 (232)
T PRK11460 144 -------TAP----------TATTIHLIHGGEDPVIDVAHAVAAQEALISL----------GGDVTLDIVEDLGHAIDP- 195 (232)
T ss_pred -------ccc----------CCCcEEEEecCCCCccCHHHHHHHHHHHHHC----------CCCeEEEEECCCCCCCCH-
Confidence 001 1579999999999999999999999999987 888999999999999853
Q ss_pred hhhHHHHHHHHHHHHHHHhC
Q 003878 765 TQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 765 ~~~~~~~~~~~~~fl~~~l~ 784 (789)
++.+.+.+||.+.|.
T Consensus 196 -----~~~~~~~~~l~~~l~ 210 (232)
T PRK11460 196 -----RLMQFALDRLRYTVP 210 (232)
T ss_pred -----HHHHHHHHHHHHHcc
Confidence 455677778877763
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-13 Score=155.39 Aligned_cols=257 Identities=14% Similarity=0.078 Sum_probs=161.7
Q ss_pred eCCEEEEEEEcCC-CCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCC
Q 003878 89 RGNKYFYFHNTGL-QPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED 167 (789)
Q Consensus 89 ~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~t 167 (789)
-+.++.|.....+ .....||+.+..+...+.|...+ ..+..++|||||++|||+.... +..+|+++|+.+
T Consensus 167 f~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~-------~~v~~p~wSPDG~~la~~s~~~--~~~~i~i~dl~t 237 (429)
T PRK01742 167 FRTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSS-------QPLMSPAWSPDGSKLAYVSFEN--KKSQLVVHDLRS 237 (429)
T ss_pred cCCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCC-------CccccceEcCCCCEEEEEEecC--CCcEEEEEeCCC
Confidence 4567877766543 23467888875444445554433 2357899999999999987533 357899999999
Q ss_pred CceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCc
Q 003878 168 QIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSK 247 (789)
Q Consensus 168 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~ 247 (789)
|+... +....+ ....++|||||+
T Consensus 238 g~~~~--l~~~~g-------------------------------------------------------~~~~~~wSPDG~ 260 (429)
T PRK01742 238 GARKV--VASFRG-------------------------------------------------------HNGAPAFSPDGS 260 (429)
T ss_pred CceEE--EecCCC-------------------------------------------------------ccCceeECCCCC
Confidence 86432 111100 135789999999
Q ss_pred EEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceE
Q 003878 248 GFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNK 327 (789)
Q Consensus 248 ~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~ 327 (789)
.|+|+.... ...+||.+++.++.. ..+... ......+.|||||++|++.+.+.. ..+
T Consensus 261 ~La~~~~~~----------------g~~~Iy~~d~~~~~~--~~lt~~---~~~~~~~~wSpDG~~i~f~s~~~g--~~~ 317 (429)
T PRK01742 261 RLAFASSKD----------------GVLNIYVMGANGGTP--SQLTSG---AGNNTEPSWSPDGQSILFTSDRSG--SPQ 317 (429)
T ss_pred EEEEEEecC----------------CcEEEEEEECCCCCe--EeeccC---CCCcCCEEECCCCCEEEEEECCCC--Cce
Confidence 999975321 124588888866532 223222 222347899999999999875433 468
Q ss_pred EEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCc
Q 003878 328 VYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERD 407 (789)
Q Consensus 328 i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~ 407 (789)
||.++..++. . .+..... ....|+|||+.|++.+. ..++++|+.+++ ++.+....
T Consensus 318 I~~~~~~~~~--------------~-~~l~~~~-~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~-~~~lt~~~--- 372 (429)
T PRK01742 318 VYRMSASGGG--------------A-SLVGGRG-YSAQISADGKTLVMING-----DNVVKQDLTSGS-TEVLSSTF--- 372 (429)
T ss_pred EEEEECCCCC--------------e-EEecCCC-CCccCCCCCCEEEEEcC-----CCEEEEECCCCC-eEEecCCC---
Confidence 9999887642 1 1112111 12458999999988654 358889998876 45444332
Q ss_pred eeeeEEEecCCEEEEEEE-eCCeEEEEEEECCCCceeeecccCCeeEEEeeccc
Q 003878 408 VLESATAVNLNQMIVSYL-SDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR 460 (789)
Q Consensus 408 ~i~~v~~~~~~~lv~~~~-~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~ 460 (789)
....++|++++..++... +++...+++++.+ |+..+.|..+.+.+..++|+|
T Consensus 373 ~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~-G~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 373 LDESPSISPNGIMIIYSSTQGLGKVLQLVSAD-GRFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred CCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCceEEccCCCCCCCCcccCC
Confidence 235677888655444444 4444456777776 766677765556565666665
|
|
| >PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-15 Score=152.67 Aligned_cols=185 Identities=17% Similarity=0.154 Sum_probs=124.6
Q ss_pred EEEEcCCCCccCCCCCCHHHH-HHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHc---CCCC
Q 003878 541 LLYGYGGFNISVTPSFSVSRT-ILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA---GYTQ 616 (789)
Q Consensus 541 ll~~hGg~~~~~~~~~~~~~~-~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~---~~~d 616 (789)
|||+|||.............. .++.++|++|+.+|||-+.+ ...+..++|+.++++|+.++ -..|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~-----------~~~p~~~~D~~~a~~~l~~~~~~~~~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPE-----------APFPAALEDVKAAYRWLLKNADKLGID 69 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTT-----------SSTTHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeecccccc-----------ccccccccccccceeeecccccccccc
Confidence 799999977765555444444 44445899999999997654 23356789999999999987 2368
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCC----ceeEEEecCCcccccccccccCCccch--hhcC-CC-CcHHHHHH----H-
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPD----LFGCALAHVGVMDMLRYHKFTIGHAWV--SDFG-CS-EEEEEFYW----L- 683 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd----~f~a~v~~~p~~d~~~~~~~~~~~~~~--~e~g-~p-~~~~~~~~----l- 683 (789)
+++|+++|.|+||.|++.++.+..+ ..+++++.+|++|+..... ..+. .++. .+ -.....+. +
T Consensus 70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (211)
T PF07859_consen 70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDG----PSYDDSNENKDDPFLPAPKIDWFWKLYL 145 (211)
T ss_dssp EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSC----HHHHHHHHHSTTSSSBHHHHHHHHHHHH
T ss_pred ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhccc----cccccccccccccccccccccccccccc
Confidence 9999999999999999998875433 4899999999988711100 0010 0010 01 01111111 1
Q ss_pred -------HhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCC
Q 003878 684 -------IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERK 756 (789)
Q Consensus 684 -------~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~ 756 (789)
...||+.. ... ...||+++++|+.|..+ .++.+|+++|++. |.+++++++++
T Consensus 146 ~~~~~~~~~~sp~~~-~~~--------~~~Pp~~i~~g~~D~l~--~~~~~~~~~L~~~----------gv~v~~~~~~g 204 (211)
T PF07859_consen 146 PGSDRDDPLASPLNA-SDL--------KGLPPTLIIHGEDDVLV--DDSLRFAEKLKKA----------GVDVELHVYPG 204 (211)
T ss_dssp STGGTTSTTTSGGGS-SCC--------TTCHEEEEEEETTSTTH--HHHHHHHHHHHHT----------T-EEEEEEETT
T ss_pred ccccccccccccccc-ccc--------ccCCCeeeeccccccch--HHHHHHHHHHHHC----------CCCEEEEEECC
Confidence 12355544 121 24799999999999765 6889999999998 99999999999
Q ss_pred CCcCC
Q 003878 757 AGHGV 761 (789)
Q Consensus 757 ~gH~~ 761 (789)
.+|++
T Consensus 205 ~~H~f 209 (211)
T PF07859_consen 205 MPHGF 209 (211)
T ss_dssp EETTG
T ss_pred CeEEe
Confidence 99986
|
; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A .... |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.8e-14 Score=156.02 Aligned_cols=235 Identities=13% Similarity=0.103 Sum_probs=162.0
Q ss_pred cccceeeEEEeeeccccceeeeeeec-----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccE
Q 003878 208 LRGIFFFFYLFSLVKSTIYSFWSVVS-----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHE 276 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g~~~l~~~~~-----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (789)
.+|.|..+++|.++..+..+||.++. .-...+++|||||+.|+|..... ...+
T Consensus 158 ~~g~f~~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~----------------~~~~ 221 (427)
T PRK02889 158 ERGVFSTRIAYVIKTGNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFES----------------KKPV 221 (427)
T ss_pred CCcccccEEEEEEccCCccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccC----------------CCcE
Confidence 47899999999998888899998876 11235789999999999986532 2346
Q ss_pred EEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee
Q 003878 277 FYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI 356 (789)
Q Consensus 277 i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~ 356 (789)
||++++.++... .+...+ .....+.|||||++|++...... ..+||++|+.++. ...++
T Consensus 222 I~~~dl~~g~~~--~l~~~~---g~~~~~~~SPDG~~la~~~~~~g--~~~Iy~~d~~~~~--------------~~~lt 280 (427)
T PRK02889 222 VYVHDLATGRRR--VVANFK---GSNSAPAWSPDGRTLAVALSRDG--NSQIYTVNADGSG--------------LRRLT 280 (427)
T ss_pred EEEEECCCCCEE--EeecCC---CCccceEECCCCCEEEEEEccCC--CceEEEEECCCCC--------------cEECC
Confidence 999999776432 232222 12346899999999998765433 5789999987642 22333
Q ss_pred cccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEE
Q 003878 357 DGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 357 ~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~ 434 (789)
.... ...+.|+|||++|+|.+++. ...+||.+++.++. .+.++.+. .......|+++ +.+++....++..+|++
T Consensus 281 ~~~~~~~~~~wSpDG~~l~f~s~~~-g~~~Iy~~~~~~g~-~~~lt~~g--~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v 356 (427)
T PRK02889 281 QSSGIDTEPFFSPDGRSIYFTSDRG-GAPQIYRMPASGGA-AQRVTFTG--SYNTSPRISPDGKLLAYISRVGGAFKLYV 356 (427)
T ss_pred CCCCCCcCeEEcCCCCEEEEEecCC-CCcEEEEEECCCCc-eEEEecCC--CCcCceEECCCCCEEEEEEccCCcEEEEE
Confidence 3211 12356999999999988864 45789999988765 45554333 22335677775 45666555666678999
Q ss_pred EECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 435 RDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 435 ~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
+|+++|+. +.++... ....++++||++.++++...- .-..++.+++..+
T Consensus 357 ~d~~~g~~-~~lt~~~-~~~~p~~spdg~~l~~~~~~~-g~~~l~~~~~~g~ 405 (427)
T PRK02889 357 QDLATGQV-TALTDTT-RDESPSFAPNGRYILYATQQG-GRSVLAAVSSDGR 405 (427)
T ss_pred EECCCCCe-EEccCCC-CccCceECCCCCEEEEEEecC-CCEEEEEEECCCC
Confidence 99987765 5565332 234678999999998877543 3357888888543
|
|
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=157.87 Aligned_cols=245 Identities=14% Similarity=0.093 Sum_probs=148.0
Q ss_pred EEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHH
Q 003878 508 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWH 587 (789)
Q Consensus 508 ~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~ 587 (789)
.+...+...|| .++.+....|. .+.|+||++||..+.. ..|.. ....+.++||.|+++|+||.|..+....
T Consensus 30 ~~~~~~~~~~g-~~l~~~~~~~~-----~~~~~vll~HG~~~~~--~~y~~-~~~~l~~~g~~v~~~D~~G~G~S~~~~~ 100 (330)
T PRK10749 30 REEAEFTGVDD-IPIRFVRFRAP-----HHDRVVVICPGRIESY--VKYAE-LAYDLFHLGYDVLIIDHRGQGRSGRLLD 100 (330)
T ss_pred ccceEEEcCCC-CEEEEEEccCC-----CCCcEEEEECCccchH--HHHHH-HHHHHHHCCCeEEEEcCCCCCCCCCCCC
Confidence 34566777899 88888776543 2347899999964321 12322 2333444999999999999887543221
Q ss_pred hcccccCCcchH----HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc---
Q 003878 588 KGGALAKKQNCF----DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK--- 660 (789)
Q Consensus 588 ~~~~~~~~~~~~----~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~--- 660 (789)
.... .....+ +|+.+.++.++.. .+..++.++|||+||.++..++.++|++++++|+.+|.........
T Consensus 101 ~~~~--~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~ 176 (330)
T PRK10749 101 DPHR--GHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPLPSWM 176 (330)
T ss_pred CCCc--CccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCCCcHH
Confidence 1000 011234 4455555554433 2446899999999999999999999999999999988653210000
Q ss_pred ----------cc--------CCccchhhc-C-C--CCcHHHHHH-HH--hcCcc----------------------cCCC
Q 003878 661 ----------FT--------IGHAWVSDF-G-C--SEEEEEFYW-LI--KYSPL----------------------HNVR 693 (789)
Q Consensus 661 ----------~~--------~~~~~~~e~-g-~--p~~~~~~~~-l~--~~sP~----------------------~~v~ 693 (789)
.. ....|.... . + ..+++.++. ++ ...|. ..+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (330)
T PRK10749 177 ARRILNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVRESILAGEQVLAGAG 256 (330)
T ss_pred HHHHHHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHHHHHHHHHHHHhhcc
Confidence 00 000010000 0 0 011211110 11 11221 1222
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchh-hHHHHH
Q 003878 694 RPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQ-KMIDEA 772 (789)
Q Consensus 694 ~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~-~~~~~~ 772 (789)
+ ...|+|+++|++|..|++..+.+++++++.+ .......++++++++||....... .+...+
T Consensus 257 ~----------i~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~-------~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~ 319 (330)
T PRK10749 257 D----------ITTPLLLLQAEEERVVDNRMHDRFCEARTAA-------GHPCEGGKPLVIKGAYHEILFEKDAMRSVAL 319 (330)
T ss_pred C----------CCCCEEEEEeCCCeeeCHHHHHHHHHHHhhc-------CCCCCCceEEEeCCCcchhhhCCcHHHHHHH
Confidence 2 2679999999999999999999999988765 000123579999999998654332 235677
Q ss_pred HHHHHHHHHH
Q 003878 773 ADRYGFMAKM 782 (789)
Q Consensus 773 ~~~~~fl~~~ 782 (789)
..+.+||+++
T Consensus 320 ~~i~~fl~~~ 329 (330)
T PRK10749 320 NAIVDFFNRH 329 (330)
T ss_pred HHHHHHHhhc
Confidence 8899998764
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-13 Score=154.93 Aligned_cols=206 Identities=18% Similarity=0.179 Sum_probs=140.3
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+++|||||+.|+|+.... ...+||++++.++.. ..+...+ .....+.|||||++|++
T Consensus 206 v~~p~wSpDg~~la~~s~~~----------------~~~~l~~~dl~~g~~--~~l~~~~---g~~~~~~~SpDG~~l~~ 264 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFER----------------GRSAIYVQDLATGQR--ELVASFR---GINGAPSFSPDGRRLAL 264 (433)
T ss_pred cccccCCCCCCEEEEEecCC----------------CCcEEEEEECCCCCE--EEeccCC---CCccCceECCCCCEEEE
Confidence 47899999999999986532 245799999976543 2332222 12236799999999998
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-eeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
...... ..+||++|++++. ...++..... ..+.|+|||+.|++.+++. +..+||.+++++++
T Consensus 265 ~~s~~g--~~~Iy~~d~~~g~--------------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~-g~~~iy~~dl~~g~ 327 (433)
T PRK04922 265 TLSRDG--NPEIYVMDLGSRQ--------------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRG-GRPQIYRVAASGGS 327 (433)
T ss_pred EEeCCC--CceEEEEECCCCC--------------eEECccCCCCccceEECCCCCEEEEEECCC-CCceEEEEECCCCC
Confidence 775443 4689999998752 2233332111 2356999999999998875 34689999998876
Q ss_pred CeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCC
Q 003878 396 DWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLI 474 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~ 474 (789)
.+.++... .....+.|+++ +.+++....++..+|+++++++|+. +.++... ....+++++|++.++++... ..
T Consensus 328 -~~~lt~~g--~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~-~~Lt~~~-~~~~p~~spdG~~i~~~s~~-~g 401 (433)
T PRK04922 328 -AERLTFQG--NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV-RTLTPGS-LDESPSFAPNGSMVLYATRE-GG 401 (433)
T ss_pred -eEEeecCC--CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe-EECCCCC-CCCCceECCCCCEEEEEEec-CC
Confidence 55555433 22345778875 4566655555566899999987765 5665432 23356789999988887654 34
Q ss_pred CcEEEEEECCCC
Q 003878 475 PGIVYQCNLKTE 486 (789)
Q Consensus 475 P~~ly~~dl~tg 486 (789)
-..+|.++++.+
T Consensus 402 ~~~L~~~~~~g~ 413 (433)
T PRK04922 402 RGVLAAVSTDGR 413 (433)
T ss_pred ceEEEEEECCCC
Confidence 468999998655
|
|
| >KOG1455 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-14 Score=143.60 Aligned_cols=244 Identities=14% Similarity=0.095 Sum_probs=164.0
Q ss_pred EEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHH
Q 003878 508 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWH 587 (789)
Q Consensus 508 ~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~ 587 (789)
...-.++..+| .++-.....|.+. ..+.-+|+++||. +......|.....++ ++.||.|..+|++|.|... .
T Consensus 27 ~~~~~~~n~rG-~~lft~~W~p~~~--~~pr~lv~~~HG~-g~~~s~~~~~~a~~l-~~~g~~v~a~D~~GhG~Sd---G 98 (313)
T KOG1455|consen 27 YSESFFTNPRG-AKLFTQSWLPLSG--TEPRGLVFLCHGY-GEHSSWRYQSTAKRL-AKSGFAVYAIDYEGHGRSD---G 98 (313)
T ss_pred eeeeeEEcCCC-CEeEEEecccCCC--CCCceEEEEEcCC-cccchhhHHHHHHHH-HhCCCeEEEeeccCCCcCC---C
Confidence 44456778899 8887777777652 2566788888984 444455666544444 4599999999999987532 1
Q ss_pred hcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc-------
Q 003878 588 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK------- 660 (789)
Q Consensus 588 ~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~------- 660 (789)
..+.-..-...++|+++-.+....+.-..--..+++|+||||.+++.++.++|+.+.++|..+|++-...-..
T Consensus 99 l~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v~~ 178 (313)
T KOG1455|consen 99 LHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPVIS 178 (313)
T ss_pred CcccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHHHH
Confidence 1112222334567777777776666544445899999999999999999999999999999999765533221
Q ss_pred -----ccCCccchhh----cCCC--CcHHHHHHHHhcCcc----------------------cCCCCCCCCCCCCCCCCC
Q 003878 661 -----FTIGHAWVSD----FGCS--EEEEEFYWLIKYSPL----------------------HNVRRPWEQNPDKPFQYP 707 (789)
Q Consensus 661 -----~~~~~~~~~e----~g~p--~~~~~~~~l~~~sP~----------------------~~v~~~~~~~~~~~~~~p 707 (789)
....+.|..- -..+ .+++.. .+...+|+ .+..+. .-
T Consensus 179 ~l~~l~~liP~wk~vp~~d~~~~~~kdp~~r-~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~v----------tv 247 (313)
T KOG1455|consen 179 ILTLLSKLIPTWKIVPTKDIIDVAFKDPEKR-KILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEV----------TV 247 (313)
T ss_pred HHHHHHHhCCceeecCCccccccccCCHHHH-HHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccc----------cc
Confidence 0111122100 0111 233322 22223343 233343 67
Q ss_pred eEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCC--CchhhHHHHHHHHHHHHHHH
Q 003878 708 STLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVG--LPTQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 708 p~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~--~~~~~~~~~~~~~~~fl~~~ 782 (789)
|+||+||+.|.++.+.-+.++++... ..+..+++|||.-|... .+.......+.++.+||+++
T Consensus 248 PflilHG~dD~VTDp~~Sk~Lye~A~------------S~DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 248 PFLILHGTDDKVTDPKVSKELYEKAS------------SSDKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred cEEEEecCCCcccCcHHHHHHHHhcc------------CCCCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 99999999999999999999998765 34568999999999865 34444566789999999875
|
|
| >KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.4e-14 Score=147.77 Aligned_cols=244 Identities=15% Similarity=0.143 Sum_probs=166.0
Q ss_pred EEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCc---cCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCCh
Q 003878 508 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI---SVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE 584 (789)
Q Consensus 508 ~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~---~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~ 584 (789)
...+.+.. . ..|++.||.|.......+.|+|||+|||... ...+.|...+..+..+.+.+|+.+|||-..|
T Consensus 63 ~~dv~~~~--~-~~l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPE--- 136 (336)
T KOG1515|consen 63 SKDVTIDP--F-TNLPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPE--- 136 (336)
T ss_pred eeeeEecC--C-CCeEEEEEcCCCCCcccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCC---
Confidence 45555543 3 4699999999986544789999999999544 3356666666666678999999999998765
Q ss_pred hHHhcccccCCcchHHHHHHHHHHHHHc----CCCCCCcEEEEeeChHHHHHHHHHHhC------CCceeEEEecCCccc
Q 003878 585 EWHKGGALAKKQNCFDDFISASEYLISA----GYTQSRKLCIEGGSNGGLLVGACINQR------PDLFGCALAHVGVMD 654 (789)
Q Consensus 585 ~~~~~~~~~~~~~~~~D~~~~~~~L~~~----~~~d~~~i~i~G~S~GG~l~~~~~~~~------pd~f~a~v~~~p~~d 654 (789)
..-+..++|..+|+.|+.++ ..+|++||+|+|-|+||.+|..++.+. +-..++.|+..|++.
T Consensus 137 --------h~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~ 208 (336)
T KOG1515|consen 137 --------HPFPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQ 208 (336)
T ss_pred --------CCCCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccC
Confidence 34567799999999999886 468999999999999999998876543 246899999999987
Q ss_pred ccccccccCCccchhhc-CCC-CcHHHHH-HHHhcCc---------ccCCCC-CCCCCCCCCCCCCeEEEEecCCCCCCC
Q 003878 655 MLRYHKFTIGHAWVSDF-GCS-EEEEEFY-WLIKYSP---------LHNVRR-PWEQNPDKPFQYPSTLLLTADHDDRVV 721 (789)
Q Consensus 655 ~~~~~~~~~~~~~~~e~-g~p-~~~~~~~-~l~~~sP---------~~~v~~-~~~~~~~~~~~~pp~Li~~g~~D~~V~ 721 (789)
........ ..... +.+ .....++ +++.+.| +-|.-. .. .....-...||+||++++.|...
T Consensus 209 ~~~~~~~e----~~~~~~~~~~~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~~~-~~d~~~~~lp~tlv~~ag~D~L~- 282 (336)
T KOG1515|consen 209 GTDRTESE----KQQNLNGSPELARPKIDKWWRLLLPNGKTDLDHPFINPVGNSL-AKDLSGLGLPPTLVVVAGYDVLR- 282 (336)
T ss_pred CCCCCCHH----HHHhhcCCcchhHHHHHHHHHHhCCCCCCCcCCcccccccccc-ccCccccCCCceEEEEeCchhhh-
Confidence 65443210 00000 111 1111111 1121222 111111 00 00000124689999999999765
Q ss_pred cHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCC--c-hhhHHHHHHHHHHHHHHH
Q 003878 722 PLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL--P-TQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 722 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~--~-~~~~~~~~~~~~~fl~~~ 782 (789)
.+...++++|++. |.++++..+++++|++.. + .....+....+.+|+.+.
T Consensus 283 -D~~~~Y~~~Lkk~----------Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 283 -DEGLAYAEKLKKA----------GVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred -hhhHHHHHHHHHc----------CCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 6889999999988 999999999999998642 2 234567777788888654
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.8e-13 Score=151.96 Aligned_cols=206 Identities=14% Similarity=0.159 Sum_probs=139.0
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+++|||||+.|+|+.... ...+||++++.++..+ .+...+. ....+.|||||++|++
T Consensus 201 ~~~p~wSpDG~~la~~s~~~----------------~~~~l~~~~l~~g~~~--~l~~~~g---~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFEQ----------------KRPRIFVQNLDTGRRE--QITNFEG---LNGAPAWSPDGSKLAF 259 (430)
T ss_pred eeeeeECCCCCEEEEEEcCC----------------CCCEEEEEECCCCCEE--EccCCCC---CcCCeEECCCCCEEEE
Confidence 36889999999999986532 2357999999876433 2322221 2235899999999998
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
...... ..+||++|++++. ...++.... ...+.|+|||+.|+|.++++ +..+|+.+++.+++
T Consensus 260 ~~~~~g--~~~Iy~~d~~~~~--------------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~-g~~~iy~~d~~~g~ 322 (430)
T PRK00178 260 VLSKDG--NPEIYVMDLASRQ--------------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRG-GKPQIYKVNVNGGR 322 (430)
T ss_pred EEccCC--CceEEEEECCCCC--------------eEEcccCCCCcCCeEECCCCCEEEEEECCC-CCceEEEEECCCCC
Confidence 875443 4789999998753 223333221 12356999999999998875 45789999998876
Q ss_pred CeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCC
Q 003878 396 DWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLI 474 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~ 474 (789)
.+.++... .......|+++ +.+++....++..+|+++|+++|+. +.++..... ..++++||++.++|+... ..
T Consensus 323 -~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~-~~p~~spdg~~i~~~~~~-~g 396 (430)
T PRK00178 323 -AERVTFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTDTSLD-ESPSVAPNGTMLIYATRQ-QG 396 (430)
T ss_pred -EEEeecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccCCCCC-CCceECCCCCEEEEEEec-CC
Confidence 55555332 22234567764 5666666666666899999997765 666543222 245789999988887543 22
Q ss_pred CcEEEEEECCCC
Q 003878 475 PGIVYQCNLKTE 486 (789)
Q Consensus 475 P~~ly~~dl~tg 486 (789)
-..+|.++...+
T Consensus 397 ~~~l~~~~~~g~ 408 (430)
T PRK00178 397 RGVLMLVSINGR 408 (430)
T ss_pred ceEEEEEECCCC
Confidence 356888888655
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-13 Score=153.03 Aligned_cols=235 Identities=16% Similarity=0.177 Sum_probs=159.7
Q ss_pred cccceeeEEEeeecccc---ceeeeeeec---c--------cccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCc
Q 003878 208 LRGIFFFFYLFSLVKST---IYSFWSVVS---Q--------FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNL 273 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g---~~~l~~~~~---~--------~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~ 273 (789)
.+|+|..+++|.+...+ .++||.++. + -...+++|||||+.|+|+.... .
T Consensus 177 ~~g~f~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~----------------g 240 (448)
T PRK04792 177 ERGAFLTRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFEN----------------R 240 (448)
T ss_pred CCccccCEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecC----------------C
Confidence 47899999999987665 468887765 1 1124789999999999986532 2
Q ss_pred ccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccE
Q 003878 274 YHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV 353 (789)
Q Consensus 274 ~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 353 (789)
..+||++++.++.. ..+...+. ....+.|||||++|++...... ..+||++|++++. ..
T Consensus 241 ~~~L~~~dl~tg~~--~~lt~~~g---~~~~~~wSPDG~~La~~~~~~g--~~~Iy~~dl~tg~--------------~~ 299 (448)
T PRK04792 241 KAEIFVQDIYTQVR--EKVTSFPG---INGAPRFSPDGKKLALVLSKDG--QPEIYVVDIATKA--------------LT 299 (448)
T ss_pred CcEEEEEECCCCCe--EEecCCCC---CcCCeeECCCCCEEEEEEeCCC--CeEEEEEECCCCC--------------eE
Confidence 35799999977543 23332221 1236799999999998765443 5789999998752 22
Q ss_pred eeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEE
Q 003878 354 KLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYV 431 (789)
Q Consensus 354 ~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~ 431 (789)
.++... ....+.|+|||+.|++.++++ ...+|+.+|+++++ .+.++.... ......|+++ +.+++....++..+
T Consensus 300 ~lt~~~~~~~~p~wSpDG~~I~f~s~~~-g~~~Iy~~dl~~g~-~~~Lt~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~ 375 (448)
T PRK04792 300 RITRHRAIDTEPSWHPDGKSLIFTSERG-GKPQIYRVNLASGK-VSRLTFEGE--QNLGGSITPDGRSMIMVNRTNGKFN 375 (448)
T ss_pred ECccCCCCccceEECCCCCEEEEEECCC-CCceEEEEECCCCC-EEEEecCCC--CCcCeeECCCCCEEEEEEecCCceE
Confidence 333321 122356999999999998775 45799999998876 566653332 2234567765 56777666666678
Q ss_pred EEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 432 LQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 432 L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
|+++|+++|+. +.++.... ...++++||++.++|+... ..-..+|.++.+.+
T Consensus 376 I~~~dl~~g~~-~~lt~~~~-d~~ps~spdG~~I~~~~~~-~g~~~l~~~~~~G~ 427 (448)
T PRK04792 376 IARQDLETGAM-QVLTSTRL-DESPSVAPNGTMVIYSTTY-QGKQVLAAVSIDGR 427 (448)
T ss_pred EEEEECCCCCe-EEccCCCC-CCCceECCCCCEEEEEEec-CCceEEEEEECCCC
Confidence 99999987765 55653321 1245789999998887653 33456888887544
|
|
| >KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-14 Score=140.98 Aligned_cols=216 Identities=17% Similarity=0.162 Sum_probs=151.2
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHH-HcCCeEEEEEeecCCCCCChhHH
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILM-RHLGAVFCIANIRGGGEYGEEWH 587 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l-~~~G~~v~~~~~RG~g~~g~~~~ 587 (789)
+-+..+...| ..+-...+.|.. ...+++||.||. +.+.+-..+....+ ....+.++..||+|.|..+.
T Consensus 36 ~v~~~~t~rg-n~~~~~y~~~~~----~~~~~lly~hGN---a~Dlgq~~~~~~~l~~~ln~nv~~~DYSGyG~S~G--- 104 (258)
T KOG1552|consen 36 EVFKVKTSRG-NEIVCMYVRPPE----AAHPTLLYSHGN---AADLGQMVELFKELSIFLNCNVVSYDYSGYGRSSG--- 104 (258)
T ss_pred ceEEeecCCC-CEEEEEEEcCcc----ccceEEEEcCCc---ccchHHHHHHHHHHhhcccceEEEEecccccccCC---
Confidence 3444555566 566666666553 256999999997 22222111122222 22589999999999775322
Q ss_pred hcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccc-cCCcc
Q 003878 588 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKF-TIGHA 666 (789)
Q Consensus 588 ~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~-~~~~~ 666 (789)
.....|.++|+.++.+||.+..- .+++|+++|+|+|..-+..+|.+.| .+|+|+.+||++.++.+.. .....
T Consensus 105 ----~psE~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~~~~~~~ 177 (258)
T KOG1552|consen 105 ----KPSERNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFPDTKTTY 177 (258)
T ss_pred ----CcccccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhccCcceEE
Confidence 22334899999999999999865 7899999999999999999999988 8999999999998876532 21113
Q ss_pred chhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCC
Q 003878 667 WVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQT 746 (789)
Q Consensus 667 ~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~ 746 (789)
|+..| +-...++.+ .+|+|++||+.|++|+..|+.+++++.+.
T Consensus 178 ~~d~f---------------~~i~kI~~i----------~~PVLiiHgtdDevv~~sHg~~Lye~~k~------------ 220 (258)
T KOG1552|consen 178 CFDAF---------------PNIEKISKI----------TCPVLIIHGTDDEVVDFSHGKALYERCKE------------ 220 (258)
T ss_pred eeccc---------------cccCcceec----------cCCEEEEecccCceecccccHHHHHhccc------------
Confidence 33333 224566665 78999999999999999999999998765
Q ss_pred CcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 747 NPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 747 ~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
+++-.+..++||.......+ .....-.|+...+
T Consensus 221 -~~epl~v~g~gH~~~~~~~~---yi~~l~~f~~~~~ 253 (258)
T KOG1552|consen 221 -KVEPLWVKGAGHNDIELYPE---YIEHLRRFISSVL 253 (258)
T ss_pred -cCCCcEEecCCCcccccCHH---HHHHHHHHHHHhc
Confidence 35556667999986544333 3344445554443
|
|
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-13 Score=151.61 Aligned_cols=242 Identities=14% Similarity=0.088 Sum_probs=154.0
Q ss_pred cEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhH
Q 003878 507 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 586 (789)
Q Consensus 507 ~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~ 586 (789)
+.....+...+| ..+.+..+.|.. ..+.|+||++||..+... .|.. +...|.++||.|+++|+||.|.....+
T Consensus 109 ~~~~~~~~~~~~-~~l~~~~~~p~~---~~~~~~Vl~lHG~~~~~~--~~~~-~a~~L~~~Gy~V~~~D~rGhG~S~~~~ 181 (395)
T PLN02652 109 RWATSLFYGARR-NALFCRSWAPAA---GEMRGILIIIHGLNEHSG--RYLH-FAKQLTSCGFGVYAMDWIGHGGSDGLH 181 (395)
T ss_pred eEEEEEEECCCC-CEEEEEEecCCC---CCCceEEEEECCchHHHH--HHHH-HHHHHHHCCCEEEEeCCCCCCCCCCCC
Confidence 445566778888 899999888864 235689999999755322 2332 345555589999999999988643221
Q ss_pred HhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC---ceeEEEecCCccccccccccc-
Q 003878 587 HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD---LFGCALAHVGVMDMLRYHKFT- 662 (789)
Q Consensus 587 ~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd---~f~a~v~~~p~~d~~~~~~~~- 662 (789)
+.......-.+|+.++++++.... ...++.++|||+||.+++.++. +|+ +++++|+.+|.+++.......
T Consensus 182 ---~~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~~~~~~~ 255 (395)
T PLN02652 182 ---GYVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKPAHPIVG 255 (395)
T ss_pred ---CCCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccccchHHHH
Confidence 101111122467788888877541 2247999999999999987764 564 789999999987653211000
Q ss_pred --------CCccc----hhhcCCC--CcHHHHHHHHhc-Ccc----------------------cCCCCCCCCCCCCCCC
Q 003878 663 --------IGHAW----VSDFGCS--EEEEEFYWLIKY-SPL----------------------HNVRRPWEQNPDKPFQ 705 (789)
Q Consensus 663 --------~~~~~----~~e~g~p--~~~~~~~~l~~~-sP~----------------------~~v~~~~~~~~~~~~~ 705 (789)
..+.+ ...++.+ .+++.. +..+ +|+ .++.++
T Consensus 256 ~~~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~--~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I---------- 323 (395)
T PLN02652 256 AVAPIFSLVAPRFQFKGANKRGIPVSRDPAAL--LAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSV---------- 323 (395)
T ss_pred HHHHHHHHhCCCCcccCcccccCCcCCCHHHH--HHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccC----------
Confidence 00000 0001111 111110 0000 111 122333
Q ss_pred CCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 706 YPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 706 ~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
..|+|++||.+|..||+.++.++++++.. ...+++++++++|....... ..+..+.+.+||..+++.
T Consensus 324 ~vPvLIi~G~~D~vvp~~~a~~l~~~~~~------------~~k~l~~~~ga~H~l~~e~~-~e~v~~~I~~FL~~~~~~ 390 (395)
T PLN02652 324 TVPFMVLHGTADRVTDPLASQDLYNEAAS------------RHKDIKLYDGFLHDLLFEPE-REEVGRDIIDWMEKRLDL 390 (395)
T ss_pred CCCEEEEEeCCCCCCCHHHHHHHHHhcCC------------CCceEEEECCCeEEeccCCC-HHHHHHHHHHHHHHHhhc
Confidence 68999999999999999999999887653 23467889999998654322 356788899999998864
Q ss_pred C
Q 003878 786 S 786 (789)
Q Consensus 786 ~ 786 (789)
.
T Consensus 391 ~ 391 (395)
T PLN02652 391 V 391 (395)
T ss_pred c
Confidence 3
|
|
| >PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=140.97 Aligned_cols=190 Identities=14% Similarity=0.113 Sum_probs=111.9
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHH-HHHcCCeEEEEEeecC------CCCCChhHHhcccccCC----cchHHH---
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTI-LMRHLGAVFCIANIRG------GGEYGEEWHKGGALAKK----QNCFDD--- 601 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~-~l~~~G~~v~~~~~RG------~g~~g~~~~~~~~~~~~----~~~~~D--- 601 (789)
...|+||++||- |... ..+. .... .+......++.++-.- +|....+|......... ...+.+
T Consensus 12 ~~~~lvi~LHG~-G~~~-~~~~-~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~ 88 (216)
T PF02230_consen 12 KAKPLVILLHGY-GDSE-DLFA-LLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAE 88 (216)
T ss_dssp T-SEEEEEE--T-TS-H-HHHH-HHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHH
T ss_pred CCceEEEEECCC-CCCc-chhH-HHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHH
Confidence 578999999995 3332 1111 1111 1222456676665321 12222378764322221 122222
Q ss_pred -HHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHH
Q 003878 602 -FISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEF 680 (789)
Q Consensus 602 -~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~ 680 (789)
+.+.++.+++.+ ++++||++.|+|+||.+++.++.++|+.++++|+.+|.+..... + .
T Consensus 89 ~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~--------~---------~--- 147 (216)
T PF02230_consen 89 RLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE--------L---------E--- 147 (216)
T ss_dssp HHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC--------C---------H---
T ss_pred HHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc--------c---------c---
Confidence 223333344444 89999999999999999999999999999999999886532110 0 0
Q ss_pred HHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcC
Q 003878 681 YWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHG 760 (789)
Q Consensus 681 ~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~ 760 (789)
...... ..+|++++||..|+.||...+.+.++.|++. +..++++.|++.||.
T Consensus 148 ---------~~~~~~---------~~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~----------~~~v~~~~~~g~gH~ 199 (216)
T PF02230_consen 148 ---------DRPEAL---------AKTPILIIHGDEDPVVPFEWAEKTAEFLKAA----------GANVEFHEYPGGGHE 199 (216)
T ss_dssp ---------CCHCCC---------CTS-EEEEEETT-SSSTHHHHHHHHHHHHCT----------T-GEEEEEETT-SSS
T ss_pred ---------cccccc---------CCCcEEEEecCCCCcccHHHHHHHHHHHHhc----------CCCEEEEEcCCCCCC
Confidence 001111 2479999999999999999999999999988 889999999999998
Q ss_pred CCCchhhHHHHHHHHHHHHHHHh
Q 003878 761 VGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 761 ~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
.. .+++.++.+||.+++
T Consensus 200 i~------~~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 200 IS------PEELRDLREFLEKHI 216 (216)
T ss_dssp --------HHHHHHHHHHHHHH-
T ss_pred CC------HHHHHHHHHHHhhhC
Confidence 84 256678888998764
|
; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A. |
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=138.70 Aligned_cols=196 Identities=13% Similarity=0.082 Sum_probs=125.5
Q ss_pred EEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChh--HHhcccccCCcchH
Q 003878 522 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE--WHKGGALAKKQNCF 599 (789)
Q Consensus 522 i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~--~~~~~~~~~~~~~~ 599 (789)
+.+.||.|++.. .++.|+||.+||+.+......-...+..+.+++||+|+.|+-......... |.. .....+....
T Consensus 1 l~Y~lYvP~~~~-~~~~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~-~~~~~g~~d~ 78 (220)
T PF10503_consen 1 LSYRLYVPPGAP-RGPVPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFS-DDQQRGGGDV 78 (220)
T ss_pred CcEEEecCCCCC-CCCCCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccc-cccccCccch
Confidence 357889999753 357899999999876543211122345678889999999985432222333 333 1122233444
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHH
Q 003878 600 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEE 679 (789)
Q Consensus 600 ~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~ 679 (789)
..+.+.+++++.+.-+|++||.+.|.|+||.|+..++..+||+|+|+...+++.--....... ....-.-|....+..
T Consensus 79 ~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~~~~~--a~~~m~~g~~~~p~~ 156 (220)
T PF10503_consen 79 AFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAASGAS--ALSAMRSGPRPAPAA 156 (220)
T ss_pred hhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccccccccCccc--HHHHhhCCCCCChHH
Confidence 556677999999888999999999999999999999999999999998887753321111100 000001122222222
Q ss_pred HHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHh
Q 003878 680 FYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYV 735 (789)
Q Consensus 680 ~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~ 735 (789)
.......++ .. .--|++|+||+.|..|.+..+.++.+.+...
T Consensus 157 ~~~a~~~~g-----~~---------~~~P~~v~hG~~D~tV~~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 157 AWGARSDAG-----AY---------PGYPRIVFHGTADTTVNPQNADQLVAQWLNV 198 (220)
T ss_pred HHHhhhhcc-----CC---------CCCCEEEEecCCCCccCcchHHHHHHHHHHc
Confidence 111111111 10 1137889999999999999999988887764
|
|
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-13 Score=157.90 Aligned_cols=135 Identities=16% Similarity=0.154 Sum_probs=104.5
Q ss_pred ecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccc
Q 003878 514 PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 592 (789)
Q Consensus 514 ~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~ 592 (789)
+++|| ++|.+.++.|++ .++.|+||++||....... ..+.......+.++||+|+++|+||.|..+..+...
T Consensus 2 ~~~DG-~~L~~~~~~P~~---~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~~--- 74 (550)
T TIGR00976 2 PMRDG-TRLAIDVYRPAG---GGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDLL--- 74 (550)
T ss_pred cCCCC-CEEEEEEEecCC---CCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceEec---
Confidence 57899 999999999986 3578999999985432210 111111223444599999999999988765443211
Q ss_pred cCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc
Q 003878 593 AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY 658 (789)
Q Consensus 593 ~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~ 658 (789)
.....+|+.++++||.++.+.+ .+|+++|+|+||.+++.++.++|+.++|+|+.+++.|+...
T Consensus 75 --~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~~ 137 (550)
T TIGR00976 75 --GSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYRD 137 (550)
T ss_pred --CcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhHh
Confidence 1456799999999999998876 69999999999999999999999999999999999987654
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-13 Score=129.99 Aligned_cols=233 Identities=12% Similarity=0.115 Sum_probs=165.0
Q ss_pred CCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCC
Q 003878 504 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 583 (789)
Q Consensus 504 ~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g 583 (789)
.++.-+++...++|. +++.+|++... ...|++||+||.-|.. ..+-+...-+..+.+..|++++|||-|..-
T Consensus 50 ~n~pye~i~l~T~D~-vtL~a~~~~~E-----~S~pTlLyfh~NAGNm--Ghr~~i~~~fy~~l~mnv~ivsYRGYG~S~ 121 (300)
T KOG4391|consen 50 FNMPYERIELRTRDK-VTLDAYLMLSE-----SSRPTLLYFHANAGNM--GHRLPIARVFYVNLKMNVLIVSYRGYGKSE 121 (300)
T ss_pred cCCCceEEEEEcCcc-eeEeeeeeccc-----CCCceEEEEccCCCcc--cchhhHHHHHHHHcCceEEEEEeeccccCC
Confidence 356678999999999 99999998722 3789999999976542 222333344556699999999999965321
Q ss_pred hhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc-c-
Q 003878 584 EEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK-F- 661 (789)
Q Consensus 584 ~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~-~- 661 (789)
. ......-.-|..++++||..+...|..+|+++|.|.||..+..++...-++..|+|...-|+.+....- +
T Consensus 122 G-------spsE~GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~v 194 (300)
T KOG4391|consen 122 G-------SPSEEGLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPLV 194 (300)
T ss_pred C-------CccccceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhhee
Confidence 1 111223346899999999999999999999999999999999999999999999999988887643321 0
Q ss_pred -cCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCC
Q 003878 662 -TIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSL 740 (789)
Q Consensus 662 -~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~ 740 (789)
..+-.+...|. ++ ..++.+..+.. +..|.|++.|..|..|||-+.+++++..-..
T Consensus 195 ~p~~~k~i~~lc-------~k--n~~~S~~ki~~----------~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~----- 250 (300)
T KOG4391|consen 195 FPFPMKYIPLLC-------YK--NKWLSYRKIGQ----------CRMPFLFISGLKDELVPPVMMRQLYELCPSR----- 250 (300)
T ss_pred ccchhhHHHHHH-------HH--hhhcchhhhcc----------ccCceEEeecCccccCCcHHHHHHHHhCchh-----
Confidence 00001111111 10 13334444443 4789999999999999999999998865432
Q ss_pred CCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 741 ENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 741 ~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
..++..||++.|.-.--.. ..+..+-+||.+....
T Consensus 251 -------~Krl~eFP~gtHNDT~i~d---GYfq~i~dFlaE~~~~ 285 (300)
T KOG4391|consen 251 -------TKRLAEFPDGTHNDTWICD---GYFQAIEDFLAEVVKS 285 (300)
T ss_pred -------hhhheeCCCCccCceEEec---cHHHHHHHHHHHhccC
Confidence 3478999999997443222 3445667788776543
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.1e-12 Score=139.29 Aligned_cols=322 Identities=16% Similarity=0.128 Sum_probs=183.7
Q ss_pred eCCEEEEEEEcCCCC----eeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEE
Q 003878 89 RGNKYFYFHNTGLQP----QSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMR 164 (789)
Q Consensus 89 ~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~d 164 (789)
+|.++++..+...+. ...+|+.+..+++.+.|..+. ..+..+.|||||++|||+.+ .+|++.+
T Consensus 3 d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~-------~~~~~~~~sP~g~~~~~v~~------~nly~~~ 69 (353)
T PF00930_consen 3 DGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPP-------PKLQDAKWSPDGKYIAFVRD------NNLYLRD 69 (353)
T ss_dssp TSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EE-------TTBSEEEE-SSSTEEEEEET------TEEEEES
T ss_pred CCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCc-------cccccceeecCCCeeEEEec------CceEEEE
Confidence 566666655432211 133555554444433333321 12467889999999999874 3799999
Q ss_pred cCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEe
Q 003878 165 IEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTH 244 (789)
Q Consensus 165 l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wsp 244 (789)
+.++...+.+-.+. . +.+. -+..|.+.++ +. . ....+.|||
T Consensus 70 ~~~~~~~~lT~dg~-~------~i~n--G~~dwvyeEE----------------------v~-------~-~~~~~~WSp 110 (353)
T PF00930_consen 70 LATGQETQLTTDGE-P------GIYN--GVPDWVYEEE----------------------VF-------D-RRSAVWWSP 110 (353)
T ss_dssp STTSEEEESES--T-T------TEEE--SB--HHHHHH----------------------TS-------S-SSBSEEE-T
T ss_pred CCCCCeEEeccccc-e------eEEc--Cccceecccc----------------------cc-------c-cccceEECC
Confidence 99986654332210 0 0000 0001111111 00 0 136899999
Q ss_pred CCcEEEEEEccCCCCC----CCCCCC-c----------c--ccCCcccEEEEEECCCCCCCcEEEEe-cCCCCeeEEEEE
Q 003878 245 DSKGFFYSRYPAPKEG----KDMDAG-T----------E--TDSNLYHEFYYHFLGTKQSEDILCWK-DPEHPKYIFSGH 306 (789)
Q Consensus 245 Dg~~i~y~~~~~~~~~----~~~~~~-~----------~--~~~~~~~~i~~~~lg~~~~~~~~~~~-~~~~~~~~~~~~ 306 (789)
||++|+|.+.++.... ...... . + -+.+-..+++++++.++....+.+-. ....+.++..+.
T Consensus 111 d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~ 190 (353)
T PF00930_consen 111 DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVG 190 (353)
T ss_dssp TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEE
T ss_pred CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccce
Confidence 9999999999876542 001110 0 0 01112234666777655433222210 113367788999
Q ss_pred EecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc--eeEEEe-cCCCEEEEEECCCCCC
Q 003878 307 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA--QYEVIA-NDDTVFTFLTNKDAPK 383 (789)
Q Consensus 307 ~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~s-~dG~~l~~~tn~~~~~ 383 (789)
|++|++.+++...++......++++|.+++.+. ........++-. ....+. +++..+++++.++ +.
T Consensus 191 W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~----------~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~-G~ 259 (353)
T PF00930_consen 191 WSPDGKRLWVQWLNRDQNRLDLVLCDASTGETR----------VVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD-GY 259 (353)
T ss_dssp EEETTEEEEEEEEETTSTEEEEEEEEECTTTCE----------EEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT-SS
T ss_pred ecCCCcEEEEEEcccCCCEEEEEEEECCCCcee----------EEEEecCCcceeeecccccccCCCCEEEEEEEcC-CC
Confidence 999999888877777777788999999875321 001111112211 112233 7888888888865 47
Q ss_pred ceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCC--eEEEEEEECC-CCceeeecccCCeeEEEeecc
Q 003878 384 YKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDV--KYVLQIRDLK-NGSLLHQLPIEIGSVNAISAR 459 (789)
Q Consensus 384 ~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g--~~~L~~~dl~-tG~~~~~l~~~~~~v~~~s~s 459 (789)
.+|++++.+++. .+.|+... .....-+.+..+ +.+++.+..+. ..+||.++++ +|+. +.|+...+....+++|
T Consensus 260 ~hly~~~~~~~~-~~~lT~G~-~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~~~~~~~~~~S 336 (353)
T PF00930_consen 260 RHLYLYDLDGGK-PRQLTSGD-WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLTCEDGDHYSASFS 336 (353)
T ss_dssp EEEEEEETTSSE-EEESS-SS-S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE-EESSTTSSTTEEEEE-
T ss_pred cEEEEEcccccc-eeccccCc-eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-EeccCCCCCceEEEEC
Confidence 899999998876 55555443 343344555553 67887777643 5699999998 6655 7887653322457889
Q ss_pred cCCcEEEEEEcCCCCCc
Q 003878 460 REDSVVFISFTSFLIPG 476 (789)
Q Consensus 460 ~d~~~l~~~~ss~~~P~ 476 (789)
|+++.++..++++.+|+
T Consensus 337 pdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 337 PDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp TTSSEEEEEEESSSSCE
T ss_pred CCCCEEEEEEcCCCCCC
Confidence 99999999999999885
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.6e-12 Score=142.02 Aligned_cols=199 Identities=15% Similarity=0.111 Sum_probs=125.3
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+++|||||+.|+|+.... ...+|+++++.++..+ .+...+. ....+.|||||++|++
T Consensus 206 v~~p~wSPDG~~la~~s~~~----------------~~~~i~i~dl~tg~~~--~l~~~~g---~~~~~~wSPDG~~La~ 264 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFEN----------------KKSQLVVHDLRSGARK--VVASFRG---HNGAPAFSPDGSRLAF 264 (429)
T ss_pred cccceEcCCCCEEEEEEecC----------------CCcEEEEEeCCCCceE--EEecCCC---ccCceeECCCCCEEEE
Confidence 47899999999999986532 2356999999765432 2222221 1236899999999999
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
...... ..+||++|++++. ...++.+.. ...+.|+|||+.|++.++++ +..+|+.++..++.
T Consensus 265 ~~~~~g--~~~Iy~~d~~~~~--------------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~-g~~~I~~~~~~~~~ 327 (429)
T PRK01742 265 ASSKDG--VLNIYVMGANGGT--------------PSQLTSGAGNNTEPSWSPDGQSILFTSDRS-GSPQVYRMSASGGG 327 (429)
T ss_pred EEecCC--cEEEEEEECCCCC--------------eEeeccCCCCcCCEEECCCCCEEEEEECCC-CCceEEEEECCCCC
Confidence 765333 4679999997642 233333221 12356999999999998865 45799999987765
Q ss_pred CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCC
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIP 475 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P 475 (789)
..++... . ....+++++..++....+ .++++|+.+|+. +.++.. .....++++||++.++++.. -..-
T Consensus 328 --~~~l~~~--~--~~~~~SpDG~~ia~~~~~---~i~~~Dl~~g~~-~~lt~~-~~~~~~~~sPdG~~i~~~s~-~g~~ 395 (429)
T PRK01742 328 --ASLVGGR--G--YSAQISADGKTLVMINGD---NVVKQDLTSGST-EVLSST-FLDESPSISPNGIMIIYSST-QGLG 395 (429)
T ss_pred --eEEecCC--C--CCccCCCCCCEEEEEcCC---CEEEEECCCCCe-EEecCC-CCCCCceECCCCCEEEEEEc-CCCc
Confidence 2333332 1 235567654433333333 578899987765 444322 12235678999998877653 2333
Q ss_pred cEEEEEECCC
Q 003878 476 GIVYQCNLKT 485 (789)
Q Consensus 476 ~~ly~~dl~t 485 (789)
..++.++...
T Consensus 396 ~~l~~~~~~G 405 (429)
T PRK01742 396 KVLQLVSADG 405 (429)
T ss_pred eEEEEEECCC
Confidence 4455555433
|
|
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-12 Score=138.18 Aligned_cols=249 Identities=14% Similarity=0.102 Sum_probs=154.0
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHh
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 588 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~ 588 (789)
.+..+.+.|| .++.+....+.. .+..+||.+||..+... .|. .....|.++||.|+..|.||.|...+ ..
T Consensus 10 ~~~~~~~~d~-~~~~~~~~~~~~----~~~g~Vvl~HG~~Eh~~--ry~-~la~~l~~~G~~V~~~D~RGhG~S~r--~~ 79 (298)
T COG2267 10 TEGYFTGADG-TRLRYRTWAAPE----PPKGVVVLVHGLGEHSG--RYE-ELADDLAARGFDVYALDLRGHGRSPR--GQ 79 (298)
T ss_pred ccceeecCCC-ceEEEEeecCCC----CCCcEEEEecCchHHHH--HHH-HHHHHHHhCCCEEEEecCCCCCCCCC--CC
Confidence 4456778899 888887776653 23389999999754422 222 23455566999999999999987654 11
Q ss_pred cccccCCcchHHHHHHHHHHHHHcCC--CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccc---cccc--
Q 003878 589 GGALAKKQNCFDDFISASEYLISAGY--TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR---YHKF-- 661 (789)
Q Consensus 589 ~~~~~~~~~~~~D~~~~~~~L~~~~~--~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~---~~~~-- 661 (789)
.+ ....|.|.+..++.+++.-. .-..+++++||||||++++.++.+++..+.++|+.+|++.+.. ....
T Consensus 80 rg----~~~~f~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~~~~ 155 (298)
T COG2267 80 RG----HVDSFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLILAR 155 (298)
T ss_pred cC----CchhHHHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHHHHH
Confidence 11 12236555555555554321 1236899999999999999999999999999999999988762 1100
Q ss_pred ---cCCccchhhc--------C-CC----CcHHHHHHHHhcCcccCCC------------CCC-CCCCCCCCCCCeEEEE
Q 003878 662 ---TIGHAWVSDF--------G-CS----EEEEEFYWLIKYSPLHNVR------------RPW-EQNPDKPFQYPSTLLL 712 (789)
Q Consensus 662 ---~~~~~~~~e~--------g-~p----~~~~~~~~l~~~sP~~~v~------------~~~-~~~~~~~~~~pp~Li~ 712 (789)
.....+...+ + .. .+++..+.+.+ +|+-... ... ...+.+.....|+|++
T Consensus 156 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~-dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~PvLll 234 (298)
T COG2267 156 LALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEA-DPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALPVLLL 234 (298)
T ss_pred HhcccccccccccccCcccccCcCcchhhcCHHHHHHHhc-CCccccCCccHHHHHHHHHhhcccchhccccccCCEEEE
Confidence 0000000000 0 01 23333222222 2320000 000 0001122346799999
Q ss_pred ecCCCCCCC-cHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchh-hHHHHHHHHHHHHHHHhC
Q 003878 713 TADHDDRVV-PLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQ-KMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 713 ~g~~D~~V~-~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~-~~~~~~~~~~~fl~~~l~ 784 (789)
+|++|..|+ .+...++++++... ..++.+++++.|....... .+.+.++.+.+||.++++
T Consensus 235 ~g~~D~vv~~~~~~~~~~~~~~~~------------~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 235 QGGDDRVVDNVEGLARFFERAGSP------------DKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred ecCCCccccCcHHHHHHHHhcCCC------------CceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 999999999 67777776665432 2689999999998654333 225778889999988765
|
|
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-13 Score=144.51 Aligned_cols=213 Identities=17% Similarity=0.184 Sum_probs=135.7
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCcc---CC-CCCCHH----HHHHHHcCCeEEEEEeecCCCCCChhHHh
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNIS---VT-PSFSVS----RTILMRHLGAVFCIANIRGGGEYGEEWHK 588 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~---~~-~~~~~~----~~~~l~~~G~~v~~~~~RG~g~~g~~~~~ 588 (789)
|| ++|.+.+++| +....++.|+||..++-.... .. ....+. ...++. +||+|++.|.||.|..+..|..
T Consensus 1 DG-v~L~adv~~P-~~~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~-~GY~vV~~D~RG~g~S~G~~~~ 77 (272)
T PF02129_consen 1 DG-VRLAADVYRP-GADGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAE-RGYAVVVQDVRGTGGSEGEFDP 77 (272)
T ss_dssp TS--EEEEEEEEE---TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHH-TT-EEEEEE-TTSTTS-S-B-T
T ss_pred CC-CEEEEEEEec-CCCCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHh-CCCEEEEECCcccccCCCcccc
Confidence 79 9999999999 444578999999998843211 00 001110 011555 9999999999998876655543
Q ss_pred cccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc--cccc----
Q 003878 589 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY--HKFT---- 662 (789)
Q Consensus 589 ~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~--~~~~---- 662 (789)
. ..+..+|..++++|+.++.+.+ .||+++|.|++|..+..+|.+.|...+|++..++..|+... ....
T Consensus 78 ~-----~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~~~ 151 (272)
T PF02129_consen 78 M-----SPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAFRL 151 (272)
T ss_dssp T-----SHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEEBC
T ss_pred C-----ChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCcccc
Confidence 2 5667899999999999997755 69999999999999999999888899999999999998762 1110
Q ss_pred -CCccch-----h-hcCC-C-CcHHH------------------------H----------HHHHhcCcccCCCCCCCCC
Q 003878 663 -IGHAWV-----S-DFGC-S-EEEEE------------------------F----------YWLIKYSPLHNVRRPWEQN 699 (789)
Q Consensus 663 -~~~~~~-----~-e~g~-p-~~~~~------------------------~----------~~l~~~sP~~~v~~~~~~~ 699 (789)
....|. . .... + ...+. . +++.+.++..++.++
T Consensus 152 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i---- 227 (272)
T PF02129_consen 152 GFFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKI---- 227 (272)
T ss_dssp CHHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG-----
T ss_pred cchhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhC----
Confidence 111230 0 0010 0 00000 0 111222222223333
Q ss_pred CCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCC-CcEEEEEeCCCCcC
Q 003878 700 PDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQT-NPIIGRIERKAGHG 760 (789)
Q Consensus 700 ~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~-~~~~l~~~~~~gH~ 760 (789)
..|+|+++|-.|..+. ..+.+.+++|++. + .+..|.+-| .+|+
T Consensus 228 ------~vP~l~v~Gw~D~~~~-~~~~~~~~~l~~~----------~~~~~~Liigp-w~H~ 271 (272)
T PF02129_consen 228 ------DVPVLIVGGWYDTLFL-RGALRAYEALRAP----------GSKPQRLIIGP-WTHG 271 (272)
T ss_dssp -------SEEEEEEETTCSSTS-HHHHHHHHHHCTT----------STC-EEEEEES-ESTT
T ss_pred ------CCCEEEecccCCcccc-hHHHHHHHHhhcC----------CCCCCEEEEeC-CCCC
Confidence 7899999999997777 8899999999876 5 567777754 4564
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-12 Score=144.49 Aligned_cols=243 Identities=14% Similarity=0.080 Sum_probs=142.5
Q ss_pred cEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhH
Q 003878 507 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 586 (789)
Q Consensus 507 ~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~ 586 (789)
..++..+...|| ..+.+..+.+.........|+||++||..+.+...........++. +||.|+++|+||.|+....
T Consensus 70 ~~~re~l~~~DG-~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~~~y~~~~~~~~~~-~g~~vv~~d~rG~G~s~~~- 146 (388)
T PLN02511 70 RYRRECLRTPDG-GAVALDWVSGDDRALPADAPVLILLPGLTGGSDDSYVRHMLLRARS-KGWRVVVFNSRGCADSPVT- 146 (388)
T ss_pred ceeEEEEECCCC-CEEEEEecCcccccCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHH-CCCEEEEEecCCCCCCCCC-
Confidence 334556677899 8887655433211122456999999998776543222222233444 9999999999998764211
Q ss_pred HhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc--eeEEEecCCcccccc-c---cc
Q 003878 587 HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDL--FGCALAHVGVMDMLR-Y---HK 660 (789)
Q Consensus 587 ~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~--f~a~v~~~p~~d~~~-~---~~ 660 (789)
..........+|+.+++++|..+ + ...++.++|+|+||.+++.++.++|+. +.++++.++..++.. . ..
T Consensus 147 ---~~~~~~~~~~~Dl~~~i~~l~~~-~-~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~~~~~ 221 (388)
T PLN02511 147 ---TPQFYSASFTGDLRQVVDHVAGR-Y-PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADEDFHK 221 (388)
T ss_pred ---CcCEEcCCchHHHHHHHHHHHHH-C-CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHHHHhc
Confidence 01111234568999999999876 2 235899999999999999999999986 566665554444310 0 00
Q ss_pred ---------cc--C------Cccchh------------------hc----CCC----CcHHHHHHHHhcCcccCCCCCCC
Q 003878 661 ---------FT--I------GHAWVS------------------DF----GCS----EEEEEFYWLIKYSPLHNVRRPWE 697 (789)
Q Consensus 661 ---------~~--~------~~~~~~------------------e~----g~p----~~~~~~~~l~~~sP~~~v~~~~~ 697 (789)
+. . ...... +| ..+ ...+ +++...|+...+.++
T Consensus 222 ~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~--~yy~~~s~~~~L~~I-- 297 (388)
T PLN02511 222 GFNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVD--AYYSNSSSSDSIKHV-- 297 (388)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHH--HHHHHcCchhhhccC--
Confidence 00 0 000000 00 000 0111 123344555566665
Q ss_pred CCCCCCCCCCeEEEEecCCCCCCCcHHH-HHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHH----HHH
Q 003878 698 QNPDKPFQYPSTLLLTADHDDRVVPLHS-LKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMI----DEA 772 (789)
Q Consensus 698 ~~~~~~~~~pp~Li~~g~~D~~V~~~~~-~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~----~~~ 772 (789)
..|+|+++|.+|+.+|+... .... .. ...+.+.+.+++||.......... =..
T Consensus 298 --------~vPtLiI~g~dDpi~p~~~~~~~~~----~~----------~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~ 355 (388)
T PLN02511 298 --------RVPLLCIQAANDPIAPARGIPREDI----KA----------NPNCLLIVTPSGGHLGWVAGPEAPFGAPWTD 355 (388)
T ss_pred --------CCCeEEEEcCCCCcCCcccCcHhHH----hc----------CCCEEEEECCCcceeccccCCCCCCCCccHH
Confidence 78999999999999987643 2221 11 234688999999997432221100 023
Q ss_pred HHHHHHHHHHh
Q 003878 773 ADRYGFMAKML 783 (789)
Q Consensus 773 ~~~~~fl~~~l 783 (789)
..+.+||....
T Consensus 356 ~~i~~Fl~~~~ 366 (388)
T PLN02511 356 PVVMEFLEALE 366 (388)
T ss_pred HHHHHHHHHHH
Confidence 46677887654
|
|
| >COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-12 Score=130.85 Aligned_cols=231 Identities=13% Similarity=0.125 Sum_probs=157.9
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccC--
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK-- 594 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~-- 594 (789)
+| .+-+++++.|.+.. .+.|+||++||+.++.....-..-+..+.+..||.|+.|+ ++..+|+..+...+
T Consensus 43 ~g-~~r~y~l~vP~g~~--~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPd-----g~~~~wn~~~~~~~~~ 114 (312)
T COG3509 43 NG-LKRSYRLYVPPGLP--SGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPD-----GYDRAWNANGCGNWFG 114 (312)
T ss_pred CC-CccceEEEcCCCCC--CCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcC-----ccccccCCCcccccCC
Confidence 56 78899999999863 4459999999998775544333345678888999999993 56667766555444
Q ss_pred ------CcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc-ccc-ccccccCCcc
Q 003878 595 ------KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM-DML-RYHKFTIGHA 666 (789)
Q Consensus 595 ------~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~-d~~-~~~~~~~~~~ 666 (789)
+..+...+.+.++.|+.+.-+||.||.|.|-|+||.|+.++++.+|++|+|+...++.. +-. ....-.. .
T Consensus 115 p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~~~~a~~~~rp~--~ 192 (312)
T COG3509 115 PADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLALGVACTPPRPV--S 192 (312)
T ss_pred cccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccCCCcccCCCCch--h
Confidence 23456777888999999988999999999999999999999999999999998887765 211 1111000 0
Q ss_pred chhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCC-----
Q 003878 667 WVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLE----- 741 (789)
Q Consensus 667 ~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~----- 741 (789)
.+..-|.+ || .+|++- . .+| |-+|..|..|......+..+.+... ++..+
T Consensus 193 ~m~~~G~~-Dp--------~~p~~g---G----------~~~--~g~g~~~~~v~~~~~~~~Waa~ng~-~~~p~~~~~~ 247 (312)
T COG3509 193 VMAFHGTA-DP--------LNPYHG---G----------GVP--IGRGQRDGVVSAADLAARWAAVNGC-QAGPDTAELP 247 (312)
T ss_pred HHHhcCCC-CC--------CCCCCC---C----------Ccc--cccccccccccHHHHHHHHHHhcCC-CCCCcccccC
Confidence 01111222 11 123322 1 233 8899999988777777777776543 22111
Q ss_pred ---------CCCCCCcEEEEEeCCCCcCCCCchhh----------HHHHHHHHHHHHHHH
Q 003878 742 ---------NSPQTNPIIGRIERKAGHGVGLPTQK----------MIDEAADRYGFMAKM 782 (789)
Q Consensus 742 ---------~~~~~~~~~l~~~~~~gH~~~~~~~~----------~~~~~~~~~~fl~~~ 782 (789)
...++.+++++.+.+.||........ .++....+++|+..+
T Consensus 248 ~~~~~~~~~~~~~~~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~ 307 (312)
T COG3509 248 DVGDGTDYDTCDGNARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQH 307 (312)
T ss_pred CCcccceeeccCCCcceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhc
Confidence 23456789999999999986532221 245666788898765
|
|
| >TIGR03611 RutD pyrimidine utilization protein D | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=136.36 Aligned_cols=206 Identities=14% Similarity=0.104 Sum_probs=126.1
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
.+.|+||++||..+... .|. .....+. +||.|+++|+||.|...... ....+++|....+..+++. .
T Consensus 11 ~~~~~iv~lhG~~~~~~--~~~-~~~~~l~-~~~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~~~~~~i~~--~ 77 (257)
T TIGR03611 11 ADAPVVVLSSGLGGSGS--YWA-PQLDVLT-QRFHVVTYDHRGTGRSPGEL-------PPGYSIAHMADDVLQLLDA--L 77 (257)
T ss_pred CCCCEEEEEcCCCcchh--HHH-HHHHHHH-hccEEEEEcCCCCCCCCCCC-------cccCCHHHHHHHHHHHHHH--h
Confidence 35689999999765432 232 2355666 79999999999987643221 1123455555555544443 3
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc-----------c-cc------------CCccchhhc
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH-----------K-FT------------IGHAWVSDF 671 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~-----------~-~~------------~~~~~~~e~ 671 (789)
+..++.++|+|+||.++..++.++|+.++++|...++....... . .. ....|....
T Consensus 78 ~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (257)
T TIGR03611 78 NIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWISEN 157 (257)
T ss_pred CCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHhhcc
Confidence 45689999999999999999999999999999877654321100 0 00 000111100
Q ss_pred CC-----------C--CcHH---HHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHh
Q 003878 672 GC-----------S--EEEE---EFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYV 735 (789)
Q Consensus 672 g~-----------p--~~~~---~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~ 735 (789)
.. . .... ....+..++....+..+ ..|+|+++|++|..+|++++.++++.+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----------~~P~l~i~g~~D~~~~~~~~~~~~~~~~~- 226 (257)
T TIGR03611 158 AARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRI----------QHPVLLIANRDDMLVPYTQSLRLAAALPN- 226 (257)
T ss_pred chhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhccc----------CccEEEEecCcCcccCHHHHHHHHHhcCC-
Confidence 00 0 0000 01112222222233333 68999999999999999998888776543
Q ss_pred hccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 736 LCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
..+..++++||....... .+....+.+||.
T Consensus 227 -------------~~~~~~~~~gH~~~~~~~--~~~~~~i~~fl~ 256 (257)
T TIGR03611 227 -------------AQLKLLPYGGHASNVTDP--ETFNRALLDFLK 256 (257)
T ss_pred -------------ceEEEECCCCCCccccCH--HHHHHHHHHHhc
Confidence 267778999999765433 345566777764
|
This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067. |
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-12 Score=139.39 Aligned_cols=241 Identities=13% Similarity=0.069 Sum_probs=138.8
Q ss_pred EEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhc
Q 003878 510 QVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKG 589 (789)
Q Consensus 510 ~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~ 589 (789)
+..++..|| ..|......... ...+.|+||++||..+..... +.......|.++||.|+++|+||.|+.......
T Consensus 33 ~~~~~~~dg-~~~~l~w~~~~~--~~~~~p~vll~HG~~g~~~~~-~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~~- 107 (324)
T PRK10985 33 WQRLELPDG-DFVDLAWSEDPA--QARHKPRLVLFHGLEGSFNSP-YAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLHR- 107 (324)
T ss_pred eeEEECCCC-CEEEEecCCCCc--cCCCCCEEEEeCCCCCCCcCH-HHHHHHHHHHHCCCEEEEEeCCCCCCCccCCcc-
Confidence 334567798 777654332111 234579999999986654332 222234455569999999999997654221111
Q ss_pred ccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc--eeEEEecCCccccccccc-ccCC--
Q 003878 590 GALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDL--FGCALAHVGVMDMLRYHK-FTIG-- 664 (789)
Q Consensus 590 ~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~--f~a~v~~~p~~d~~~~~~-~~~~-- 664 (789)
.......+|+.++++++.++. ...+++++|+|+||.+++.++.++++. +.++|+.++..++..... +...
T Consensus 108 ---~~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~~~~~~~~ 182 (324)
T PRK10985 108 ---IYHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSYRMEQGFS 182 (324)
T ss_pred ---eECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHHHHhhhHH
Confidence 111234689999999998762 235799999999999888877776543 677666666554321100 0000
Q ss_pred ----c-----------cchhhc-CC-CCcH------------------------HHHHHHHhcCcccCCCCCCCCCCCCC
Q 003878 665 ----H-----------AWVSDF-GC-SEEE------------------------EEFYWLIKYSPLHNVRRPWEQNPDKP 703 (789)
Q Consensus 665 ----~-----------~~~~e~-g~-p~~~------------------------~~~~~l~~~sP~~~v~~~~~~~~~~~ 703 (789)
. .....| +. +.++ ...+++...++...+.++
T Consensus 183 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~~i-------- 254 (324)
T PRK10985 183 RVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLNQI-------- 254 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHhCC--------
Confidence 0 000000 00 0111 112233344444444444
Q ss_pred CCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCc----hhhHHHHHHHHHHHH
Q 003878 704 FQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP----TQKMIDEAADRYGFM 779 (789)
Q Consensus 704 ~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~----~~~~~~~~~~~~~fl 779 (789)
..|+|+++|++|+.+++.....+. +. ...+.+.+.+++||...-. ....+ .-..+.+||
T Consensus 255 --~~P~lii~g~~D~~~~~~~~~~~~----~~----------~~~~~~~~~~~~GH~~~~~g~~~~~~~w-~~~~~~~~~ 317 (324)
T PRK10985 255 --RKPTLIIHAKDDPFMTHEVIPKPE----SL----------PPNVEYQLTEHGGHVGFVGGTLLKPQMW-LEQRIPDWL 317 (324)
T ss_pred --CCCEEEEecCCCCCCChhhChHHH----Hh----------CCCeEEEECCCCCceeeCCCCCCCCCcc-HHHHHHHHH
Confidence 679999999999999876554442 22 2236778889999963211 11111 123578888
Q ss_pred HHHhCC
Q 003878 780 AKMLGA 785 (789)
Q Consensus 780 ~~~l~~ 785 (789)
...++.
T Consensus 318 ~~~~~~ 323 (324)
T PRK10985 318 TTYLEA 323 (324)
T ss_pred HHhhcC
Confidence 776653
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-11 Score=137.11 Aligned_cols=246 Identities=14% Similarity=0.116 Sum_probs=159.4
Q ss_pred CCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEee
Q 003878 140 SEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFS 219 (789)
Q Consensus 140 SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 219 (789)
...+.+++|....++....+|+++|..++.... +.... .
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~--l~~~~----------------------~----------------- 190 (417)
T TIGR02800 152 GAFSTRIAYVSKSGKSRRYELQVADYDGANPQT--ITRSR----------------------E----------------- 190 (417)
T ss_pred CCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEE--eecCC----------------------C-----------------
Confidence 446788999877654668899999987654322 11110 0
Q ss_pred eccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCC
Q 003878 220 LVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHP 299 (789)
Q Consensus 220 s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~ 299 (789)
...+++|||||+.|+|+.... ...+|+++++.++... .+....
T Consensus 191 ----------------~~~~p~~Spdg~~la~~~~~~----------------~~~~i~v~d~~~g~~~--~~~~~~--- 233 (417)
T TIGR02800 191 ----------------PILSPAWSPDGQKLAYVSFES----------------GKPEIYVQDLATGQRE--KVASFP--- 233 (417)
T ss_pred ----------------ceecccCCCCCCEEEEEEcCC----------------CCcEEEEEECCCCCEE--EeecCC---
Confidence 136789999999999986432 2357999998765332 222221
Q ss_pred eeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCCCEEEEEEC
Q 003878 300 KYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTN 378 (789)
Q Consensus 300 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG~~l~~~tn 378 (789)
.....+.|||||+.|++...... ..+||++++.++. ...+..... ...+.|++||+.|++.++
T Consensus 234 ~~~~~~~~spDg~~l~~~~~~~~--~~~i~~~d~~~~~--------------~~~l~~~~~~~~~~~~s~dg~~l~~~s~ 297 (417)
T TIGR02800 234 GMNGAPAFSPDGSKLAVSLSKDG--NPDIYVMDLDGKQ--------------LTRLTNGPGIDTEPSWSPDGKSIAFTSD 297 (417)
T ss_pred CCccceEECCCCCEEEEEECCCC--CccEEEEECCCCC--------------EEECCCCCCCCCCEEECCCCCEEEEEEC
Confidence 12235789999999998765433 4679999998742 122222111 123568999999999888
Q ss_pred CCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEee
Q 003878 379 KDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAIS 457 (789)
Q Consensus 379 ~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s 457 (789)
+. ...+|+.+++.+++ .+.+.... .....+.++++ +.+++.....+..+|++++++++.. +.++... ....++
T Consensus 298 ~~-g~~~iy~~d~~~~~-~~~l~~~~--~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~-~~~~p~ 371 (417)
T TIGR02800 298 RG-GSPQIYMMDADGGE-VRRLTFRG--GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTG-LDESPS 371 (417)
T ss_pred CC-CCceEEEEECCCCC-EEEeecCC--CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCC-CCCCce
Confidence 75 35689999998876 55565443 33456677775 4555555555567899999986654 4554332 223457
Q ss_pred cccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 458 ARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 458 ~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
+++|++.+++....-. ...++.++...+
T Consensus 372 ~spdg~~l~~~~~~~~-~~~l~~~~~~g~ 399 (417)
T TIGR02800 372 FAPNGRMILYATTRGG-RGVLGLVSTDGR 399 (417)
T ss_pred ECCCCCEEEEEEeCCC-cEEEEEEECCCc
Confidence 8899998888776433 356777765443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-11 Score=136.41 Aligned_cols=238 Identities=15% Similarity=0.151 Sum_probs=160.9
Q ss_pred cccccccceeeEEEeeeccc---cceeeeeeec-----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccc
Q 003878 204 LFLYLRGIFFFFYLFSLVKS---TIYSFWSVVS-----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 269 (789)
Q Consensus 204 ~~~~~~~~~~~~~~~~s~~~---g~~~l~~~~~-----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~ 269 (789)
.+..++|+|.++++|++..+ ..++||.++. ......++|+||++.|+|..+..
T Consensus 148 ~lt~~~g~~~~~i~~v~~~~~~~~~~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~------------- 214 (425)
T COG0823 148 KLTGIKGAFDTRIAYVAESDGGPLPYELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFEL------------- 214 (425)
T ss_pred hhcCCcceecceEEEEeecccCCCCceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEec-------------
Confidence 46678999999999965542 3447777664 22235789999999999997653
Q ss_pred cCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCC
Q 003878 270 DSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 349 (789)
Q Consensus 270 ~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 349 (789)
..+.+++++++.++..+.++-+... ...++|||||++|+|...+.. ..+||++|+.++.
T Consensus 215 --~~~~~i~~~~l~~g~~~~i~~~~g~-----~~~P~fspDG~~l~f~~~rdg--~~~iy~~dl~~~~------------ 273 (425)
T COG0823 215 --GGCPRIYYLDLNTGKRPVILNFNGN-----NGAPAFSPDGSKLAFSSSRDG--SPDIYLMDLDGKN------------ 273 (425)
T ss_pred --CCCceEEEEeccCCccceeeccCCc-----cCCccCCCCCCEEEEEECCCC--CccEEEEcCCCCc------------
Confidence 2226799999998876654443322 236899999999999987654 6889999998742
Q ss_pred CccEeeeccccc-eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeC
Q 003878 350 LPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSD 427 (789)
Q Consensus 350 ~~~~~l~~~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~ 427 (789)
..+++..... ..+.|+|||+.++|.+++. +.-+|+++++++.+ .+.++....... ...|+++ +++++.....
T Consensus 274 --~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~-G~p~I~~~~~~g~~-~~riT~~~~~~~--~p~~SpdG~~i~~~~~~~ 347 (425)
T COG0823 274 --LPRLTNGFGINTSPSWSPDGSKIVFTSDRG-GRPQIYLYDLEGSQ-VTRLTFSGGGNS--NPVWSPDGDKIVFESSSG 347 (425)
T ss_pred --ceecccCCccccCccCCCCCCEEEEEeCCC-CCcceEEECCCCCc-eeEeeccCCCCc--CccCCCCCCEEEEEeccC
Confidence 2234433222 2466999999999999986 46799999999876 466666554333 4455664 5666666555
Q ss_pred CeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEEC
Q 003878 428 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 428 g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl 483 (789)
|...+...++.++...+.++.. ......++.+++..+.++..+. .-+.++..+.
T Consensus 348 g~~~i~~~~~~~~~~~~~lt~~-~~~e~ps~~~ng~~i~~~s~~~-~~~~l~~~s~ 401 (425)
T COG0823 348 GQWDIDKNDLASGGKIRILTST-YLNESPSWAPNGRMIMFSSGQG-GGSVLSLVSL 401 (425)
T ss_pred CceeeEEeccCCCCcEEEcccc-ccCCCCCcCCCCceEEEeccCC-CCceEEEeec
Confidence 6567888888766533555433 2223456778888777765554 3344444443
|
|
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-12 Score=137.84 Aligned_cols=237 Identities=14% Similarity=0.116 Sum_probs=139.0
Q ss_pred CCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCCh
Q 003878 505 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE 584 (789)
Q Consensus 505 ~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~ 584 (789)
.+..+++.++-. | .+|++++..|++ +++.|+||++-|.-+.... .+. .+...+..+|++++.+|..|-|+..
T Consensus 162 ~~~i~~v~iP~e-g-~~I~g~LhlP~~---~~p~P~VIv~gGlDs~qeD-~~~-l~~~~l~~rGiA~LtvDmPG~G~s~- 233 (411)
T PF06500_consen 162 DYPIEEVEIPFE-G-KTIPGYLHLPSG---EKPYPTVIVCGGLDSLQED-LYR-LFRDYLAPRGIAMLTVDMPGQGESP- 233 (411)
T ss_dssp SSEEEEEEEEET-T-CEEEEEEEESSS---SS-EEEEEEE--TTS-GGG-GHH-HHHCCCHHCT-EEEEE--TTSGGGT-
T ss_pred CCCcEEEEEeeC-C-cEEEEEEEcCCC---CCCCCEEEEeCCcchhHHH-HHH-HHHHHHHhCCCEEEEEccCCCcccc-
Confidence 466788888864 5 799999999984 5789999988664433222 111 1223344599999999999987532
Q ss_pred hHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccc-ccccc--cc
Q 003878 585 EWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD-MLRYH--KF 661 (789)
Q Consensus 585 ~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d-~~~~~--~~ 661 (789)
.|-. .+....=..++++||...+++|++||+++|.|+||+.+..+|..++++++|+|+..|+++ +..-. ..
T Consensus 234 ~~~l------~~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~~~~~ 307 (411)
T PF06500_consen 234 KWPL------TQDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDPEWQQ 307 (411)
T ss_dssp TT-S-------S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-HHHHT
T ss_pred cCCC------CcCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhccHHHHh
Confidence 2211 111112245789999999999999999999999999999999887889999999888644 32210 00
Q ss_pred cCCc----cchhhcCCC--CcHHHHHHHHhcCccc--CCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHH
Q 003878 662 TIGH----AWVSDFGCS--EEEEEFYWLIKYSPLH--NVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQ 733 (789)
Q Consensus 662 ~~~~----~~~~e~g~p--~~~~~~~~l~~~sP~~--~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~ 733 (789)
..+. .+...+|.. ++......+.+||-.. -+... .+.+|+|.+.+.+|+.+|.++..-++.
T Consensus 308 ~~P~my~d~LA~rlG~~~~~~~~l~~el~~~SLk~qGlL~~r--------r~~~plL~i~~~~D~v~P~eD~~lia~--- 376 (411)
T PF06500_consen 308 RVPDMYLDVLASRLGMAAVSDESLRGELNKFSLKTQGLLSGR--------RCPTPLLAINGEDDPVSPIEDSRLIAE--- 376 (411)
T ss_dssp TS-HHHHHHHHHHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS---------BSS-EEEEEETT-SSS-HHHHHHHHH---
T ss_pred cCCHHHHHHHHHHhCCccCCHHHHHHHHHhcCcchhccccCC--------CCCcceEEeecCCCCCCCHHHHHHHHh---
Confidence 1111 112344543 2333334456666543 22111 257899999999999999888644432
Q ss_pred HhhccCCCCCCCCCcEEEEEeCCCC-cCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 734 YVLCTSLENSPQTNPIIGRIERKAG-HGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~~~~~g-H~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
. +.+-+...++... |.. .-+.+..+..||.+.|
T Consensus 377 -~----------s~~gk~~~~~~~~~~~g------y~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 377 -S----------STDGKALRIPSKPLHMG------YPQALDEIYKWLEDKL 410 (411)
T ss_dssp -T----------BTT-EEEEE-SSSHHHH------HHHHHHHHHHHHHHHH
T ss_pred -c----------CCCCceeecCCCccccc------hHHHHHHHHHHHHHhc
Confidence 1 2222444444443 432 1355678899998876
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.5e-14 Score=147.00 Aligned_cols=144 Identities=17% Similarity=0.156 Sum_probs=90.4
Q ss_pred CCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccC----CCC--------C---CHHHHHHHHcCC
Q 003878 504 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV----TPS--------F---SVSRTILMRHLG 568 (789)
Q Consensus 504 ~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~----~~~--------~---~~~~~~~l~~~G 568 (789)
+.|..|++.|...++ ..+|++++.|++. .++.|.||++||-.+... .+. . .......|+++|
T Consensus 84 dGY~~EKv~f~~~p~-~~vpaylLvPd~~--~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~G 160 (390)
T PF12715_consen 84 DGYTREKVEFNTTPG-SRVPAYLLVPDGA--KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRG 160 (390)
T ss_dssp TTEEEEEEEE--STT-B-EEEEEEEETT----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTT
T ss_pred CCeEEEEEEEEccCC-eeEEEEEEecCCC--CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCC
Confidence 468889999999999 9999999999986 589999999998422110 000 1 111234456699
Q ss_pred eEEEEEeecCCCCCChhHHh-----------------cccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHH
Q 003878 569 AVFCIANIRGGGEYGEEWHK-----------------GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLL 631 (789)
Q Consensus 569 ~~v~~~~~RG~g~~g~~~~~-----------------~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l 631 (789)
|+|+++|.+|-||.+..-+. .|....+...+ |-+.+++||.++..+|++||+++|+|+||+.
T Consensus 161 YVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~-ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~ 239 (390)
T PF12715_consen 161 YVVLAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAW-DDMRALDFLASLPEVDPDRIGCMGFSMGGYR 239 (390)
T ss_dssp SEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHH-HHHHHHHHHCT-TTEEEEEEEEEEEGGGHHH
T ss_pred CEEEEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHH-HHHHHHHHHhcCcccCccceEEEeecccHHH
Confidence 99999999998876542111 11111122233 4556999999999999999999999999999
Q ss_pred HHHHHHhCCCceeEEEecCCc
Q 003878 632 VGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 632 ~~~~~~~~pd~f~a~v~~~p~ 652 (789)
+.++++.. |+++|+|+..-+
T Consensus 240 a~~LaALD-dRIka~v~~~~l 259 (390)
T PF12715_consen 240 AWWLAALD-DRIKATVANGYL 259 (390)
T ss_dssp HHHHHHH--TT--EEEEES-B
T ss_pred HHHHHHcc-hhhHhHhhhhhh
Confidence 99999995 567777665443
|
|
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.3e-12 Score=137.04 Aligned_cols=235 Identities=11% Similarity=0.042 Sum_probs=137.7
Q ss_pred EecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCC--------------------C---CCHHHHHHHHcCCe
Q 003878 513 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP--------------------S---FSVSRTILMRHLGA 569 (789)
Q Consensus 513 ~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~--------------------~---~~~~~~~~l~~~G~ 569 (789)
+.+.|| .+|....+.|+ .+..+|+++||-.+..... . |...+...|.++||
T Consensus 2 ~~~~~g-~~l~~~~~~~~-----~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~ 75 (332)
T TIGR01607 2 FRNKDG-LLLKTYSWIVK-----NAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGY 75 (332)
T ss_pred ccCCCC-CeEEEeeeecc-----CCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCC
Confidence 567799 99988877765 2456999999954443211 1 22345666766999
Q ss_pred EEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHc------------------CCCCCCcEEEEeeChHHHH
Q 003878 570 VFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA------------------GYTQSRKLCIEGGSNGGLL 631 (789)
Q Consensus 570 ~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~------------------~~~d~~~i~i~G~S~GG~l 631 (789)
.|+.+|.||.|.....-...+....-..-.+|+.+.++.+.+. .+-....++++||||||++
T Consensus 76 ~V~~~D~rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i 155 (332)
T TIGR01607 76 SVYGLDLQGHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNI 155 (332)
T ss_pred cEEEecccccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHH
Confidence 9999999998753321000111011111234555555554431 1111247999999999999
Q ss_pred HHHHHHhCCC--------ceeEEEecCCcccccccc----------------------c-ccCCc-cchhhcCCCCcHHH
Q 003878 632 VGACINQRPD--------LFGCALAHVGVMDMLRYH----------------------K-FTIGH-AWVSDFGCSEEEEE 679 (789)
Q Consensus 632 ~~~~~~~~pd--------~f~a~v~~~p~~d~~~~~----------------------~-~~~~~-~~~~e~g~p~~~~~ 679 (789)
+..++.+.++ .++++|+.+|.+.+.... + +..+. .+.. .++..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~-----~~~~~ 230 (332)
T TIGR01607 156 ALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYE-----KSPYV 230 (332)
T ss_pred HHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccc-----cChhh
Confidence 9988765442 588888888765432100 0 00000 0000 11111
Q ss_pred HHHHHhcCccc----------------------CCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhc
Q 003878 680 FYWLIKYSPLH----------------------NVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLC 737 (789)
Q Consensus 680 ~~~l~~~sP~~----------------------~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~ 737 (789)
.+. ...+|+. .+..+ ....|+|+++|.+|..|++..+.++++++..
T Consensus 231 ~~~-~~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i--------~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~--- 298 (332)
T TIGR01607 231 NDI-IKFDKFRYDGGITFNLASELIKATDTLDCDIDYI--------PKDIPILFIHSKGDCVCSYEGTVSFYNKLSI--- 298 (332)
T ss_pred hhH-HhcCccccCCcccHHHHHHHHHHHHHHHhhHhhC--------CCCCCEEEEEeCCCCccCHHHHHHHHHhccC---
Confidence 110 1111211 11111 1146999999999999999998887776542
Q ss_pred cCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 738 TSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 738 ~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
....+.++++++|....... ..+..+.+.+||.
T Consensus 299 ---------~~~~l~~~~g~~H~i~~E~~-~~~v~~~i~~wL~ 331 (332)
T TIGR01607 299 ---------SNKELHTLEDMDHVITIEPG-NEEVLKKIIEWIS 331 (332)
T ss_pred ---------CCcEEEEECCCCCCCccCCC-HHHHHHHHHHHhh
Confidence 23578889999999876543 2466778888874
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.2e-11 Score=130.60 Aligned_cols=262 Identities=17% Similarity=0.168 Sum_probs=158.4
Q ss_pred CCCCcEEEEEEecC----CceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeE
Q 003878 140 SEDAKYLAYALSYS----GSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFF 215 (789)
Q Consensus 140 SpDg~~la~~~~~~----g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 215 (789)
||||+++++..+.. -+-..+++|+|+++++..+......
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~------------------------------------- 43 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPP------------------------------------- 43 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EET-------------------------------------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCcc-------------------------------------
Confidence 89999999977532 2446789999999997665332211
Q ss_pred EEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEec
Q 003878 216 YLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD 295 (789)
Q Consensus 216 ~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~ 295 (789)
....+.|||||+.|+|++.. .||+.++.++.. ..+...+
T Consensus 44 --------------------~~~~~~~sP~g~~~~~v~~~--------------------nly~~~~~~~~~-~~lT~dg 82 (353)
T PF00930_consen 44 --------------------KLQDAKWSPDGKYIAFVRDN--------------------NLYLRDLATGQE-TQLTTDG 82 (353)
T ss_dssp --------------------TBSEEEE-SSSTEEEEEETT--------------------EEEEESSTTSEE-EESES--
T ss_pred --------------------ccccceeecCCCeeEEEecC--------------------ceEEEECCCCCe-EEecccc
Confidence 24789999999999999753 377776655421 1111111
Q ss_pred --------CC-----C-CeeEEEEEEecCCcEEEEEEEcCCC-------------------------------CceEEEE
Q 003878 296 --------PE-----H-PKYIFSGHVTEDGQYLVMCIEENCD-------------------------------PVNKVYY 330 (789)
Q Consensus 296 --------~~-----~-~~~~~~~~~SpDG~~l~~~~~~~~~-------------------------------~~~~i~~ 330 (789)
++ + -....++.|||||++|++...+... ...++++
T Consensus 83 ~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v 162 (353)
T PF00930_consen 83 EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFV 162 (353)
T ss_dssp TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEE
T ss_pred ceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEE
Confidence 10 0 0001356799999999997755421 1234566
Q ss_pred EECCCCCCCcccccccCCCCccEeeec--ccccee---EEEecCCCE-EEEEECCCCCCceEEEEECCCCCCeEEeccCC
Q 003878 331 CDLSALPEGLEGFKKRDGLLPFVKLID--GFDAQY---EVIANDDTV-FTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA 404 (789)
Q Consensus 331 ~d~~~g~~~~~~~~~~~~~~~~~~l~~--~~~~~~---~~~s~dG~~-l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~ 404 (789)
+++++++.. ...... .....+ ..|+++++. ++...|+......|+.+|..++. .+.+..+.
T Consensus 163 ~~~~~~~~~------------~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~-~~~~~~e~ 229 (353)
T PF00930_consen 163 VDLASGKTT------------ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGE-TRVVLEET 229 (353)
T ss_dssp EESSSTCCC------------EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTT-CEEEEEEE
T ss_pred EECCCCcEE------------EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCc-eeEEEEec
Confidence 666554210 111110 001111 348999884 44557787788899999998765 33333332
Q ss_pred CCcee---eeEEEe--cCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEE-EeecccCCcEEEEEEcCCC-CCcE
Q 003878 405 ERDVL---ESATAV--NLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVN-AISARREDSVVFISFTSFL-IPGI 477 (789)
Q Consensus 405 ~~~~i---~~v~~~--~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~-~~s~s~d~~~l~~~~ss~~-~P~~ 477 (789)
....+ ..+.+. +++.++.....+|..+|++++.+++. .+.|+.....|. .+.++.+++.++|..+... .-..
T Consensus 230 ~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~ 308 (353)
T PF00930_consen 230 SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERH 308 (353)
T ss_dssp SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBE
T ss_pred CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceE
Confidence 22222 234443 34677777779999999999998555 478887777774 4567888899998876522 3448
Q ss_pred EEEEECC-CCCceEEEeee
Q 003878 478 VYQCNLK-TETPEMKIFRE 495 (789)
Q Consensus 478 ly~~dl~-tg~~~~~~l~~ 495 (789)
+|+.+++ ++ ..+.|+.
T Consensus 309 lY~v~~~~~~--~~~~LT~ 325 (353)
T PF00930_consen 309 LYRVSLDSGG--EPKCLTC 325 (353)
T ss_dssp EEEEETTETT--EEEESST
T ss_pred EEEEEeCCCC--CeEeccC
Confidence 8888988 66 4666664
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK00870 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-11 Score=130.84 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=85.7
Q ss_pred cEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhH
Q 003878 507 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 586 (789)
Q Consensus 507 ~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~ 586 (789)
..+.+.+...+| .++.+.+. ..+ +...|.||++||.++... .|.. ....|.++||.|+++|.||.|.....
T Consensus 20 ~~~~~~~~~~~~-~~~~i~y~-~~G---~~~~~~lvliHG~~~~~~--~w~~-~~~~L~~~gy~vi~~Dl~G~G~S~~~- 90 (302)
T PRK00870 20 APHYVDVDDGDG-GPLRMHYV-DEG---PADGPPVLLLHGEPSWSY--LYRK-MIPILAAAGHRVIAPDLIGFGRSDKP- 90 (302)
T ss_pred CceeEeecCCCC-ceEEEEEE-ecC---CCCCCEEEEECCCCCchh--hHHH-HHHHHHhCCCEEEEECCCCCCCCCCC-
Confidence 445566776677 66554433 222 113578999999754322 3443 34456557999999999998753211
Q ss_pred HhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 587 HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 587 ~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
......++++..+.+..++++ .+.+++.++|||+||.++..++.++|++++++|+..+
T Consensus 91 -----~~~~~~~~~~~a~~l~~~l~~--l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 148 (302)
T PRK00870 91 -----TRREDYTYARHVEWMRSWFEQ--LDLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANT 148 (302)
T ss_pred -----CCcccCCHHHHHHHHHHHHHH--cCCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCC
Confidence 011123566666655555554 2345899999999999999999999999999998765
|
|
| >TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.7e-12 Score=135.11 Aligned_cols=208 Identities=15% Similarity=0.026 Sum_probs=118.7
Q ss_pred CccEEEEEcCCCCccCCCC-CCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 537 SHPCLLYGYGGFNISVTPS-FSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~-~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
..|.||++||.......+. +...+..+++ .||.|+++|+||.|......... .......+|+.+.++. .
T Consensus 29 ~~~~ivllHG~~~~~~~~~~~~~~~~~l~~-~~~~vi~~D~~G~G~S~~~~~~~---~~~~~~~~~l~~~l~~------l 98 (282)
T TIGR03343 29 NGEAVIMLHGGGPGAGGWSNYYRNIGPFVD-AGYRVILKDSPGFNKSDAVVMDE---QRGLVNARAVKGLMDA------L 98 (282)
T ss_pred CCCeEEEECCCCCchhhHHHHHHHHHHHHh-CCCEEEEECCCCCCCCCCCcCcc---cccchhHHHHHHHHHH------c
Confidence 3467999999654332221 1122334445 79999999999987643211000 0000112344433333 2
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc---cc----------ccCC--cc---chhhc-CCC--
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY---HK----------FTIG--HA---WVSDF-GCS-- 674 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~---~~----------~~~~--~~---~~~e~-g~p-- 674 (789)
+.+++.++|+|+||.++..++.++|++++++|+..|....... .. .... .. +...+ -++
T Consensus 99 ~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (282)
T TIGR03343 99 DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSL 178 (282)
T ss_pred CCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCccc
Confidence 4569999999999999999999999999999987764210000 00 0000 00 00000 000
Q ss_pred Cc--------------HHHH-HHHHh--cCcc------cCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHH
Q 003878 675 EE--------------EEEF-YWLIK--YSPL------HNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLAT 731 (789)
Q Consensus 675 ~~--------------~~~~-~~l~~--~sP~------~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~ 731 (789)
.. ++.. ..+.. ..++ ..+.+ ...|+|+++|++|..|++..+.++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------i~~Pvlli~G~~D~~v~~~~~~~~~~~ 248 (282)
T TIGR03343 179 ITEELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGE----------IKAKTLVTWGRDDRFVPLDHGLKLLWN 248 (282)
T ss_pred CcHHHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhh----------CCCCEEEEEccCCCcCCchhHHHHHHh
Confidence 00 1110 00110 0111 11222 267999999999999999988888776
Q ss_pred HHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 732 MQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 732 L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
+.. +++.+++++||....... ....+.+.+||.
T Consensus 249 ~~~--------------~~~~~i~~agH~~~~e~p--~~~~~~i~~fl~ 281 (282)
T TIGR03343 249 MPD--------------AQLHVFSRCGHWAQWEHA--DAFNRLVIDFLR 281 (282)
T ss_pred CCC--------------CEEEEeCCCCcCCcccCH--HHHHHHHHHHhh
Confidence 653 377889999999765444 245567778874
|
Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself. |
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.7e-11 Score=128.28 Aligned_cols=207 Identities=14% Similarity=0.108 Sum_probs=132.4
Q ss_pred eEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchH
Q 003878 520 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCF 599 (789)
Q Consensus 520 ~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~ 599 (789)
..+|+.+++|.. .++.|+||++||..+.. ..|. .....|+++||+|+++|++|.+.. .....+
T Consensus 37 ~~~p~~v~~P~~---~g~~PvVv~lHG~~~~~--~~y~-~l~~~Las~G~~VvapD~~g~~~~-----------~~~~~i 99 (313)
T PLN00021 37 PPKPLLVATPSE---AGTYPVLLFLHGYLLYN--SFYS-QLLQHIASHGFIVVAPQLYTLAGP-----------DGTDEI 99 (313)
T ss_pred CCceEEEEeCCC---CCCCCEEEEECCCCCCc--ccHH-HHHHHHHhCCCEEEEecCCCcCCC-----------CchhhH
Confidence 679999999975 47899999999976532 2233 344556669999999998873210 112345
Q ss_pred HHHHHHHHHHHHc--------CCCCCCcEEEEeeChHHHHHHHHHHhCCC-----ceeEEEecCCcccccccccccCCcc
Q 003878 600 DDFISASEYLISA--------GYTQSRKLCIEGGSNGGLLVGACINQRPD-----LFGCALAHVGVMDMLRYHKFTIGHA 666 (789)
Q Consensus 600 ~D~~~~~~~L~~~--------~~~d~~~i~i~G~S~GG~l~~~~~~~~pd-----~f~a~v~~~p~~d~~~~~~~~~~~~ 666 (789)
+|..++++|+.+. ...|+++++++|||+||.++..++..+|+ .|+++|...|+..+....
T Consensus 100 ~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~~------- 172 (313)
T PLN00021 100 KDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKGK------- 172 (313)
T ss_pred HHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccccccc-------
Confidence 6677777777652 23677999999999999999999998875 578888888865432110
Q ss_pred chhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCC-----CCC----cHH-HHHHHHHHHHhh
Q 003878 667 WVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDD-----RVV----PLH-SLKLLATMQYVL 736 (789)
Q Consensus 667 ~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~-----~V~----~~~-~~~~~~~L~~~~ 736 (789)
...+.. ..+.|- .-.. ..|+|++++..|. .+| ... -.+|+++.
T Consensus 173 -------~~~p~i----l~~~~~--s~~~----------~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~---- 225 (313)
T PLN00021 173 -------QTPPPV----LTYAPH--SFNL----------DIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNEC---- 225 (313)
T ss_pred -------CCCCcc----cccCcc--cccC----------CCCeEEEecCCCcccccccccccCCCCCCHHHHHHhc----
Confidence 001100 111111 1112 4689999888663 222 322 36666554
Q ss_pred ccCCCCCCCCCcEEEEEeCCCCcCCC-Cch--------------------hhHHHHHHHHHHHHHHHhCCC
Q 003878 737 CTSLENSPQTNPIIGRIERKAGHGVG-LPT--------------------QKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 737 ~~~~~~~~~~~~~~l~~~~~~gH~~~-~~~--------------------~~~~~~~~~~~~fl~~~l~~~ 786 (789)
+.|..+.+.+++||... .+. ..+......+.+||..+|..+
T Consensus 226 ---------~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~~c~~g~~~~~~r~~~~g~~~aFl~~~l~~~ 287 (313)
T PLN00021 226 ---------KAPAVHFVAKDYGHMDMLDDDTSGIRGKITGCMCKNGKPRKPMRRFVGGAVVAFLKAYLEGD 287 (313)
T ss_pred ---------CCCeeeeeecCCCcceeecCCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhcCc
Confidence 44678888889999632 111 112233456899999998654
|
|
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-12 Score=127.88 Aligned_cols=173 Identities=16% Similarity=0.136 Sum_probs=120.2
Q ss_pred CCceEEEEEEEecCCCCCCCCc-cEEEEEcCCCCccCCCCCCHHHHHHHHcCC----------eEEEEEeecCCCCCChh
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSH-PCLLYGYGGFNISVTPSFSVSRTILMRHLG----------AVFCIANIRGGGEYGEE 585 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~-P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G----------~~v~~~~~RG~g~~g~~ 585 (789)
-| .++++.+|.|++..+++++ |++|+.||+....... ...+...+| +-|++|.| ..-
T Consensus 170 tg-neLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~dn-----~~~l~sg~gaiawa~pedqcfVlAPQy------~~i 237 (387)
T COG4099 170 TG-NELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSDN-----DKVLSSGIGAIAWAGPEDQCFVLAPQY------NPI 237 (387)
T ss_pred cC-ceeeEEEecccccCCCCccccEEEEEecCCCCCchh-----hhhhhcCccceeeecccCceEEEcccc------ccc
Confidence 46 7999999999999999998 9999999986543321 123333233 23333331 111
Q ss_pred HHhcccccCCcchHHHHHHHHH-HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCC
Q 003878 586 WHKGGALAKKQNCFDDFISASE-YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 664 (789)
Q Consensus 586 ~~~~~~~~~~~~~~~D~~~~~~-~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~ 664 (789)
+... .....+...-.++.++ -|.++.-+|.+||.++|.|.||+.+.+++-++||.|+|++..+|=-|
T Consensus 238 f~d~--e~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d---------- 305 (387)
T COG4099 238 FADS--EEKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGD---------- 305 (387)
T ss_pred cccc--ccccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCc----------
Confidence 1111 1111222334455555 56677779999999999999999999999999999999998877211
Q ss_pred ccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCC
Q 003878 665 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSP 744 (789)
Q Consensus 665 ~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~ 744 (789)
. + ..++.. ...|+.++|+.+|..+|.+.++-++++|+..
T Consensus 306 -----------~-----------v-~lv~~l---------k~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~--------- 344 (387)
T COG4099 306 -----------R-----------V-YLVRTL---------KKAPIWVFHSSDDKVIPVSNSRVLYERLKAL--------- 344 (387)
T ss_pred -----------h-----------h-hhhhhh---------ccCceEEEEecCCCccccCcceeehHHHHhh---------
Confidence 0 0 112222 3579999999999999999999999999988
Q ss_pred CCCcEEEEEeC
Q 003878 745 QTNPIIGRIER 755 (789)
Q Consensus 745 ~~~~~~l~~~~ 755 (789)
++++.+..+.
T Consensus 345 -~~kv~Ytaf~ 354 (387)
T COG4099 345 -DRKVNYTAFL 354 (387)
T ss_pred -ccccchhhhh
Confidence 7777666554
|
|
| >PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.5e-12 Score=119.39 Aligned_cols=145 Identities=14% Similarity=0.162 Sum_probs=103.7
Q ss_pred EEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCc
Q 003878 540 CLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRK 619 (789)
Q Consensus 540 ~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~ 619 (789)
+||++||..+.. ..|.. +...++++||.++.+|+|+.+.... ..+..++++++... ..++++
T Consensus 1 ~vv~~HG~~~~~--~~~~~-~~~~l~~~G~~v~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~~~~~~ 62 (145)
T PF12695_consen 1 VVVLLHGWGGSR--RDYQP-LAEALAEQGYAVVAFDYPGHGDSDG--------------ADAVERVLADIRAG-YPDPDR 62 (145)
T ss_dssp EEEEECTTTTTT--HHHHH-HHHHHHHTTEEEEEESCTTSTTSHH--------------SHHHHHHHHHHHHH-HCTCCE
T ss_pred CEEEECCCCCCH--HHHHH-HHHHHHHCCCEEEEEecCCCCccch--------------hHHHHHHHHHHHhh-cCCCCc
Confidence 589999986642 23443 3444555899999999998776411 11444444444332 228899
Q ss_pred EEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCC
Q 003878 620 LCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQN 699 (789)
Q Consensus 620 i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~ 699 (789)
|+++|+|+||.++..++.+. ..++++|+..|+ |. .+.. ..
T Consensus 63 i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~---------------------~~-~~~~------------~~----- 102 (145)
T PF12695_consen 63 IILIGHSMGGAIAANLAARN-PRVKAVVLLSPY---------------------PD-SEDL------------AK----- 102 (145)
T ss_dssp EEEEEETHHHHHHHHHHHHS-TTESEEEEESES---------------------SG-CHHH------------TT-----
T ss_pred EEEEEEccCcHHHHHHhhhc-cceeEEEEecCc---------------------cc-hhhh------------hc-----
Confidence 99999999999999999987 689999998882 11 0111 11
Q ss_pred CCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcC
Q 003878 700 PDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHG 760 (789)
Q Consensus 700 ~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~ 760 (789)
...|+|+++|++|..+++++..+++++++ .+.+++++++++|+
T Consensus 103 -----~~~pv~~i~g~~D~~~~~~~~~~~~~~~~-------------~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 103 -----IRIPVLFIHGENDPLVPPEQVRRLYEALP-------------GPKELYIIPGAGHF 145 (145)
T ss_dssp -----TTSEEEEEEETT-SSSHHHHHHHHHHHHC-------------SSEEEEEETTS-TT
T ss_pred -----cCCcEEEEEECCCCcCCHHHHHHHHHHcC-------------CCcEEEEeCCCcCc
Confidence 25699999999999999999999888875 35689999999995
|
... |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-10 Score=119.24 Aligned_cols=276 Identities=17% Similarity=0.131 Sum_probs=168.2
Q ss_pred eEEeccCCCCC-----CCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeee
Q 003878 118 KVLLDPNTLSD-----DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHL 192 (789)
Q Consensus 118 ~~l~d~~~~~~-----~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~ 192 (789)
.-|-|+++-.. ++..-+-.++|||||++|| +|.-..+|.+||.++|+.+-.++.+.. -..-+|
T Consensus 139 vR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iA-----SG~~dg~I~lwdpktg~~~g~~l~gH~-------K~It~L 206 (480)
T KOG0271|consen 139 VRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIA-----SGSKDGSIRLWDPKTGQQIGRALRGHK-------KWITAL 206 (480)
T ss_pred EEeeccCCCCcceeecCCccEEEEEEECCCcchhh-----ccccCCeEEEecCCCCCcccccccCcc-------cceeEE
Confidence 45678877653 3444578899999999999 677788999999999976655544321 112223
Q ss_pred eeccccc-cccccccccccceeeEEEeeeccccceeeeeeec--------cc--ccceEEEEeCCcEEEEEEccCCCCCC
Q 003878 193 TISLLNV-PTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVS--------QF--KFSSIAWTHDSKGFFYSRYPAPKEGK 261 (789)
Q Consensus 193 ~~~~~~~-p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~--------~~--~~~~~~wspDg~~i~y~~~~~~~~~~ 261 (789)
.-.|... |+. +.+.+|..+|+-.||.+.. .. .+.-+.| .|..++|+..
T Consensus 207 awep~hl~p~~------------r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrw--GG~gliySgS------- 265 (480)
T KOG0271|consen 207 AWEPLHLVPPC------------RRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRW--GGEGLIYSGS------- 265 (480)
T ss_pred eecccccCCCc------------cceecccCCCCEEEEEccCceEEEEeccCccceEEEEE--cCCceEEecC-------
Confidence 3334433 443 4688999999999999876 11 1245678 4677888732
Q ss_pred CCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEE-----------EecCCcE-----------------
Q 003878 262 DMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGH-----------VTEDGQY----------------- 313 (789)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~-----------~SpDG~~----------------- 313 (789)
...+|..|+...+. ++-+...+..++..++ +.|-|++
T Consensus 266 -----------~DrtIkvw~a~dG~----~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~ 330 (480)
T KOG0271|consen 266 -----------QDRTIKVWRALDGK----LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEA 330 (480)
T ss_pred -----------CCceEEEEEccchh----HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHH
Confidence 23345555543211 1111111122222222 2233333
Q ss_pred --------EEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-eeEEEecCCCEEEEEECCCCCCc
Q 003878 314 --------LVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKY 384 (789)
Q Consensus 314 --------l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dG~~l~~~tn~~~~~~ 384 (789)
|+-.+ + ...+++++-... .+|..+++..-.. ....|||||++++-.+ -+.
T Consensus 331 ~~~~~~erlVSgs-D----d~tlflW~p~~~------------kkpi~rmtgHq~lVn~V~fSPd~r~IASaS----FDk 389 (480)
T KOG0271|consen 331 VLKDSGERLVSGS-D----DFTLFLWNPFKS------------KKPITRMTGHQALVNHVSFSPDGRYIASAS----FDK 389 (480)
T ss_pred hhccCcceeEEec-C----CceEEEeccccc------------ccchhhhhchhhheeeEEECCCccEEEEee----ccc
Confidence 43222 2 356888865432 2334344432221 2345899999877433 234
Q ss_pred eEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcE
Q 003878 385 KIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSV 464 (789)
Q Consensus 385 ~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~ 464 (789)
.|-+++..+|+....+-.|- ..+..++|+.|.+|+++.+.|. .|.+|++.+.+....|+.....|..+.++|||..
T Consensus 390 SVkLW~g~tGk~lasfRGHv--~~VYqvawsaDsRLlVS~SkDs--TLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~r 465 (480)
T KOG0271|consen 390 SVKLWDGRTGKFLASFRGHV--AAVYQVAWSADSRLLVSGSKDS--TLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQR 465 (480)
T ss_pred ceeeeeCCCcchhhhhhhcc--ceeEEEEeccCccEEEEcCCCc--eEEEEEeeeeeecccCCCCCceEEEEEecCCCce
Confidence 67788888887333232232 4577899999889999999885 7889999866655556555677888999999987
Q ss_pred EE
Q 003878 465 VF 466 (789)
Q Consensus 465 l~ 466 (789)
+.
T Consensus 466 V~ 467 (480)
T KOG0271|consen 466 VA 467 (480)
T ss_pred ee
Confidence 65
|
|
| >PRK11071 esterase YqiA; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=122.79 Aligned_cols=182 Identities=14% Similarity=0.021 Sum_probs=115.0
Q ss_pred cEEEEEcCCCCccCCCCCCH-HHHHHHHc--CCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 539 PCLLYGYGGFNISVTPSFSV-SRTILMRH--LGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~-~~~~~l~~--~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
|.||++||-.++... |.. ....++.+ .+|.|.++|.||.+ ++..+.++.++++.
T Consensus 2 p~illlHGf~ss~~~--~~~~~~~~~l~~~~~~~~v~~~dl~g~~-------------------~~~~~~l~~l~~~~-- 58 (190)
T PRK11071 2 STLLYLHGFNSSPRS--AKATLLKNWLAQHHPDIEMIVPQLPPYP-------------------ADAAELLESLVLEH-- 58 (190)
T ss_pred CeEEEECCCCCCcch--HHHHHHHHHHHHhCCCCeEEeCCCCCCH-------------------HHHHHHHHHHHHHc--
Confidence 789999996554333 222 22345543 37999999999742 24555666666652
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhc-C--CCCcHHHHHHHHhcCcccCC
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDF-G--CSEEEEEFYWLIKYSPLHNV 692 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~-g--~p~~~~~~~~l~~~sP~~~v 692 (789)
+.+++.++|+|+||++++.++.++|. + +|+.+|..++........+.. ...+ + -+-..+.++.++++.+.. +
T Consensus 59 ~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~-i 133 (190)
T PRK11071 59 GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDYLGEN-ENPYTGQQYVLESRHIYDLKVMQIDP-L 133 (190)
T ss_pred CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHhcCCc-ccccCCCcEEEcHHHHHHHHhcCCcc-C
Confidence 23589999999999999999999984 3 456666666422211001110 0001 1 112234445555554433 2
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHH
Q 003878 693 RRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEA 772 (789)
Q Consensus 693 ~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~ 772 (789)
+ . ..|++++||++|..||+.++.+++++. .+.+.++++|.+... .+..
T Consensus 134 ~-~----------~~~v~iihg~~De~V~~~~a~~~~~~~-----------------~~~~~~ggdH~f~~~----~~~~ 181 (190)
T PRK11071 134 E-S----------PDLIWLLQQTGDEVLDYRQAVAYYAAC-----------------RQTVEEGGNHAFVGF----ERYF 181 (190)
T ss_pred C-C----------hhhEEEEEeCCCCcCCHHHHHHHHHhc-----------------ceEEECCCCcchhhH----HHhH
Confidence 2 2 468899999999999999999998842 244669999999543 2455
Q ss_pred HHHHHHHH
Q 003878 773 ADRYGFMA 780 (789)
Q Consensus 773 ~~~~~fl~ 780 (789)
..+.+|+.
T Consensus 182 ~~i~~fl~ 189 (190)
T PRK11071 182 NQIVDFLG 189 (190)
T ss_pred HHHHHHhc
Confidence 66777763
|
|
| >TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.9e-12 Score=129.28 Aligned_cols=203 Identities=14% Similarity=0.073 Sum_probs=120.8
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
..|+||++||..... ..|.. ....|. .||.|+.+|+||.|.... .....++++..+.+..+++. .+
T Consensus 12 ~~~~li~~hg~~~~~--~~~~~-~~~~l~-~~~~v~~~d~~G~G~s~~--------~~~~~~~~~~~~~~~~~i~~--~~ 77 (251)
T TIGR02427 12 GAPVLVFINSLGTDL--RMWDP-VLPALT-PDFRVLRYDKRGHGLSDA--------PEGPYSIEDLADDVLALLDH--LG 77 (251)
T ss_pred CCCeEEEEcCcccch--hhHHH-HHHHhh-cccEEEEecCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHH--hC
Confidence 568999999954332 23333 445666 799999999999876421 11233566766666666654 24
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc-------c---cC-------Cccch-hhcCCCCcH-
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK-------F---TI-------GHAWV-SDFGCSEEE- 677 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~-------~---~~-------~~~~~-~e~g~p~~~- 677 (789)
.+++.++|+|+||.++..++.++|++++++|+..+...+..... . .. ...|. ..+..+...
T Consensus 78 ~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (251)
T TIGR02427 78 IERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREAHPAR 157 (251)
T ss_pred CCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccCChHH
Confidence 46899999999999999999999999999887765432211000 0 00 00000 011111100
Q ss_pred -HHHH-H---------------HHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCC
Q 003878 678 -EEFY-W---------------LIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSL 740 (789)
Q Consensus 678 -~~~~-~---------------l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~ 740 (789)
+.+. . +...+....+.+. ..|+|+++|++|..+|++...++.+.+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~Pvlii~g~~D~~~~~~~~~~~~~~~~~------ 221 (251)
T TIGR02427 158 LDLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAI----------AVPTLCIAGDQDGSTPPELVREIADLVPG------ 221 (251)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhc----------CCCeEEEEeccCCcCChHHHHHHHHhCCC------
Confidence 0111 0 0011111122222 57999999999999999877776655432
Q ss_pred CCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHH
Q 003878 741 ENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFM 779 (789)
Q Consensus 741 ~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl 779 (789)
..+.+++++||....... ......+.+|+
T Consensus 222 --------~~~~~~~~~gH~~~~~~p--~~~~~~i~~fl 250 (251)
T TIGR02427 222 --------ARFAEIRGAGHIPCVEQP--EAFNAALRDFL 250 (251)
T ss_pred --------ceEEEECCCCCcccccCh--HHHHHHHHHHh
Confidence 367888999998654333 23344555554
|
Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. |
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-10 Score=123.33 Aligned_cols=235 Identities=12% Similarity=-0.009 Sum_probs=138.6
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCC-CCCHHHHHHHHcCCeEEEEEeecCCCCCChhHH
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP-SFSVSRTILMRHLGAVFCIANIRGGGEYGEEWH 587 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~-~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~ 587 (789)
+.+.++. +| .++.+.++.|.+. +.|.+|++|||....... .........|+++||.|+.+|+||.|.....
T Consensus 3 ~~~~~~~-~~-~~l~g~~~~p~~~----~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~~~-- 74 (274)
T TIGR03100 3 RALTFSC-EG-ETLVGVLHIPGAS----HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSEGE-- 74 (274)
T ss_pred eeEEEEc-CC-cEEEEEEEcCCCC----CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCC--
Confidence 3566664 57 7899999998752 345677778776543322 1112334556669999999999998864311
Q ss_pred hcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc-------
Q 003878 588 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK------- 660 (789)
Q Consensus 588 ~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~------- 660 (789)
........+|+.+++++|.++- ...++|+++|+|+||++++.++.. ++.++++|+.+|++.......
T Consensus 75 ----~~~~~~~~~d~~~~~~~l~~~~-~g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~~~~~~~~~~~~~~ 148 (274)
T TIGR03100 75 ----NLGFEGIDADIAAAIDAFREAA-PHLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVRTEAAQAASRIRHY 148 (274)
T ss_pred ----CCCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccCCcccchHHHHHHH
Confidence 0111234689999999998651 122579999999999999888765 568999999998754222100
Q ss_pred ----ccCCccchhhc-CCCCcHHHHHHHH----hcCccc--------------CCCCCCCCCCCCCCCCCeEEEEecCCC
Q 003878 661 ----FTIGHAWVSDF-GCSEEEEEFYWLI----KYSPLH--------------NVRRPWEQNPDKPFQYPSTLLLTADHD 717 (789)
Q Consensus 661 ----~~~~~~~~~e~-g~p~~~~~~~~l~----~~sP~~--------------~v~~~~~~~~~~~~~~pp~Li~~g~~D 717 (789)
...+..|...+ |..+..+..+.+. ++.|.. .+.. ...|+|+++|..|
T Consensus 149 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~P~ll~~g~~D 218 (274)
T TIGR03100 149 YLGQLLSADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLER----------FQGPVLFILSGND 218 (274)
T ss_pred HHHHHhChHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHh----------cCCcEEEEEcCcc
Confidence 00111222111 1111000011111 121110 0111 2579999999999
Q ss_pred CCCCcHHH-----HHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 718 DRVVPLHS-----LKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 718 ~~V~~~~~-----~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
...+.... .++.+.+. ...+++.++++++|....... +.+..+.+.+||.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~l~------------~~~v~~~~~~~~~H~l~~e~~-~~~v~~~i~~wL~ 273 (274)
T TIGR03100 219 LTAQEFADSVLGEPAWRGALE------------DPGIERVEIDGADHTFSDRVW-REWVAARTTEWLR 273 (274)
T ss_pred hhHHHHHHHhccChhhHHHhh------------cCCeEEEecCCCCcccccHHH-HHHHHHHHHHHHh
Confidence 86432210 22222232 234789999999997654433 3567788999985
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.1e-11 Score=126.46 Aligned_cols=204 Identities=13% Similarity=0.024 Sum_probs=122.9
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
+.|+||++||..+... .|.. ....|+ ++|.|+.+|+||.|..... .....+++++.+.+..+++. .+
T Consensus 27 ~~~~vv~~hG~~~~~~--~~~~-~~~~l~-~~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~l~~~i~~--~~ 93 (278)
T TIGR03056 27 AGPLLLLLHGTGASTH--SWRD-LMPPLA-RSFRVVAPDLPGHGFTRAP-------FRFRFTLPSMAEDLSALCAA--EG 93 (278)
T ss_pred CCCeEEEEcCCCCCHH--HHHH-HHHHHh-hCcEEEeecCCCCCCCCCc-------cccCCCHHHHHHHHHHHHHH--cC
Confidence 3589999999765432 3333 345666 6899999999998753211 11134567777777666654 23
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc-c--------------ccc---------CCccchhhc-
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY-H--------------KFT---------IGHAWVSDF- 671 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~-~--------------~~~---------~~~~~~~e~- 671 (789)
.+++.++|+|+||.+++.++.++|++.+++|+..+....... . ... ....+....
T Consensus 94 ~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (278)
T TIGR03056 94 LSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGAADQQRVERLIR 173 (278)
T ss_pred CCCceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhcccCcchhHHhh
Confidence 357899999999999999999999999888877664432110 0 000 000000000
Q ss_pred --CCCCcHHHHHH-----------------HHhcCc--c-cCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHH
Q 003878 672 --GCSEEEEEFYW-----------------LIKYSP--L-HNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLL 729 (789)
Q Consensus 672 --g~p~~~~~~~~-----------------l~~~sP--~-~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~ 729 (789)
+...++..... +..++. . ..+++ ...|+|+++|++|..||+..+..+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------i~~P~lii~g~~D~~vp~~~~~~~~ 243 (278)
T TIGR03056 174 DTGSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPR----------ITIPLHLIAGEEDKAVPPDESKRAA 243 (278)
T ss_pred ccccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhccc----------CCCCEEEEEeCCCcccCHHHHHHHH
Confidence 00001100100 011110 0 01122 2579999999999999998887776
Q ss_pred HHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHH
Q 003878 730 ATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFM 779 (789)
Q Consensus 730 ~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl 779 (789)
+.+.. +++.+++++||.+..... .+..+.+.+|+
T Consensus 244 ~~~~~--------------~~~~~~~~~gH~~~~e~p--~~~~~~i~~f~ 277 (278)
T TIGR03056 244 TRVPT--------------ATLHVVPGGGHLVHEEQA--DGVVGLILQAA 277 (278)
T ss_pred HhccC--------------CeEEEECCCCCcccccCH--HHHHHHHHHHh
Confidence 55443 367888999998764333 35566677775
|
Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.1e-11 Score=130.66 Aligned_cols=244 Identities=18% Similarity=0.135 Sum_probs=155.1
Q ss_pred CeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecc-cccccccc
Q 003878 103 PQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSWVCFC 181 (789)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~-~~~~~~~~ 181 (789)
....|+.-+......+++.+... .+..+.|||||+.++|..-+.+. ...++++|+.++..... ...+
T Consensus 171 ~~~~l~~~D~dg~~~~~l~~~~~-------~~~~p~ws~~~~~~~y~~f~~~~-~~~i~~~~l~~g~~~~i~~~~g---- 238 (425)
T COG0823 171 LPYELALGDYDGYNQQKLTDSGS-------LILTPAWSPDGKKLAYVSFELGG-CPRIYYLDLNTGKRPVILNFNG---- 238 (425)
T ss_pred CCceEEEEccCCcceeEecccCc-------ceeccccCcCCCceEEEEEecCC-CceEEEEeccCCccceeeccCC----
Confidence 34556766543233445554442 35678899999999998655443 27899999999954321 1111
Q ss_pred cccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCC
Q 003878 182 FSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGK 261 (789)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~ 261 (789)
....++|||||++|+|+....
T Consensus 239 ------------------------------------------------------~~~~P~fspDG~~l~f~~~rd----- 259 (425)
T COG0823 239 ------------------------------------------------------NNGAPAFSPDGSKLAFSSSRD----- 259 (425)
T ss_pred ------------------------------------------------------ccCCccCCCCCCEEEEEECCC-----
Confidence 137899999999999996532
Q ss_pred CCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcc
Q 003878 262 DMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLE 341 (789)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~ 341 (789)
...+||+.++.+.+... +.... .....+.|||||++|+|.+.+.+ ...||+++++++.
T Consensus 260 -----------g~~~iy~~dl~~~~~~~--Lt~~~---gi~~~Ps~spdG~~ivf~Sdr~G--~p~I~~~~~~g~~---- 317 (425)
T COG0823 260 -----------GSPDIYLMDLDGKNLPR--LTNGF---GINTSPSWSPDGSKIVFTSDRGG--RPQIYLYDLEGSQ---- 317 (425)
T ss_pred -----------CCccEEEEcCCCCccee--cccCC---ccccCccCCCCCCEEEEEeCCCC--CcceEEECCCCCc----
Confidence 45679999998876332 22222 12236899999999999987665 5689999998742
Q ss_pred cccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-CE
Q 003878 342 GFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQ 419 (789)
Q Consensus 342 ~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~ 419 (789)
...++... ....+.|+|||++|+|.+-. .+...++..++.++..++.+.. . ...+..++.++ ..
T Consensus 318 ----------~~riT~~~~~~~~p~~SpdG~~i~~~~~~-~g~~~i~~~~~~~~~~~~~lt~-~--~~~e~ps~~~ng~~ 383 (425)
T COG0823 318 ----------VTRLTFSGGGNSNPVWSPDGDKIVFESSS-GGQWDIDKNDLASGGKIRILTS-T--YLNESPSWAPNGRM 383 (425)
T ss_pred ----------eeEeeccCCCCcCccCCCCCCEEEEEecc-CCceeeEEeccCCCCcEEEccc-c--ccCCCCCcCCCCce
Confidence 12333322 22357799999999998843 3347788888876654444432 2 22334445553 44
Q ss_pred EEEEEEeCCeEEEEEEECCCCceeeecccCCeeEE
Q 003878 420 MIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVN 454 (789)
Q Consensus 420 lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~ 454 (789)
++++....+.+.+...++. |+..+.+....+.+.
T Consensus 384 i~~~s~~~~~~~l~~~s~~-g~~~~~~~~~~~~~~ 417 (425)
T COG0823 384 IMFSSGQGGGSVLSLVSLD-GRVSRPLPLADGDVR 417 (425)
T ss_pred EEEeccCCCCceEEEeecc-ceeEEEEeccCccee
Confidence 5555555556677777775 665444443334443
|
|
| >COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=114.92 Aligned_cols=199 Identities=16% Similarity=0.134 Sum_probs=130.4
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCC--CccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhH
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF--NISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 586 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~--~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~ 586 (789)
..+.++..-| .+.+.. -|.+ ....|+.|.+|=-+ +..+..--.......+.++||.++.+|+||=|..
T Consensus 5 ~~v~i~Gp~G--~le~~~-~~~~---~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S---- 74 (210)
T COG2945 5 PTVIINGPAG--RLEGRY-EPAK---TPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRS---- 74 (210)
T ss_pred CcEEecCCcc--cceecc-CCCC---CCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccc----
Confidence 3455555555 233332 2332 24678877777653 2222222222345566679999999999996653
Q ss_pred HhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCcc
Q 003878 587 HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHA 666 (789)
Q Consensus 587 ~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~ 666 (789)
+|.-+++....+|..+|++||.++. -+..-..+.|+|.|+++++.++.++|+. ...|+..|..+.
T Consensus 75 --~G~fD~GiGE~~Da~aaldW~~~~h-p~s~~~~l~GfSFGa~Ia~~la~r~~e~-~~~is~~p~~~~----------- 139 (210)
T COG2945 75 --QGEFDNGIGELEDAAAALDWLQARH-PDSASCWLAGFSFGAYIAMQLAMRRPEI-LVFISILPPINA----------- 139 (210)
T ss_pred --cCcccCCcchHHHHHHHHHHHHhhC-CCchhhhhcccchHHHHHHHHHHhcccc-cceeeccCCCCc-----------
Confidence 3445677888999999999999884 3434468999999999999999998763 344444443331
Q ss_pred chhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCC
Q 003878 667 WVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQT 746 (789)
Q Consensus 667 ~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~ 746 (789)
| .+ ..+.. +..|.|+++|+.|+.|.+....++.+ +
T Consensus 140 ~-----------df---------s~l~P----------~P~~~lvi~g~~Ddvv~l~~~l~~~~---------------~ 174 (210)
T COG2945 140 Y-----------DF---------SFLAP----------CPSPGLVIQGDADDVVDLVAVLKWQE---------------S 174 (210)
T ss_pred h-----------hh---------hhccC----------CCCCceeEecChhhhhcHHHHHHhhc---------------C
Confidence 0 01 01111 24599999999999888777666643 4
Q ss_pred CcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 747 NPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 747 ~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
.+..+++.++++|.|... .....+.+.+|+.
T Consensus 175 ~~~~~i~i~~a~HFF~gK---l~~l~~~i~~~l~ 205 (210)
T COG2945 175 IKITVITIPGADHFFHGK---LIELRDTIADFLE 205 (210)
T ss_pred CCCceEEecCCCceeccc---HHHHHHHHHHHhh
Confidence 566788889999998653 3445566777773
|
|
| >COG0400 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5e-11 Score=118.36 Aligned_cols=185 Identities=18% Similarity=0.119 Sum_probs=125.2
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCC--CCChh---HHhcccccCC--cchHHHHHHHHH
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGG--EYGEE---WHKGGALAKK--QNCFDDFISASE 607 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g--~~g~~---~~~~~~~~~~--~~~~~D~~~~~~ 607 (789)
+...|+||+.||-.+. ...|.+ +..++. -...++. +||.- +.+.. |...+..+.+ ......+.+.++
T Consensus 15 ~p~~~~iilLHG~Ggd--e~~~~~-~~~~~~-P~~~~is--~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~ 88 (207)
T COG0400 15 DPAAPLLILLHGLGGD--ELDLVP-LPELIL-PNATLVS--PRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLE 88 (207)
T ss_pred CCCCcEEEEEecCCCC--hhhhhh-hhhhcC-CCCeEEc--CCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHH
Confidence 4567899999995432 334443 333333 2344444 34422 12222 3333222211 112345556666
Q ss_pred HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcC
Q 003878 608 YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYS 687 (789)
Q Consensus 608 ~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~s 687 (789)
.+.++.-++++|+++.|+|+|+.+++.++.++|++|+++|+..|..-....
T Consensus 89 ~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~----------------------------- 139 (207)
T COG0400 89 ELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPE----------------------------- 139 (207)
T ss_pred HHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCc-----------------------------
Confidence 677777789999999999999999999999999999999988885421000
Q ss_pred cccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhh
Q 003878 688 PLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQK 767 (789)
Q Consensus 688 P~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~ 767 (789)
+..+. ..+|+|++||..|++||..++.++.+.|++. |..++.+.++ .||....
T Consensus 140 ~~~~~------------~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~----------g~~v~~~~~~-~GH~i~~---- 192 (207)
T COG0400 140 LLPDL------------AGTPILLSHGTEDPVVPLALAEALAEYLTAS----------GADVEVRWHE-GGHEIPP---- 192 (207)
T ss_pred ccccc------------CCCeEEEeccCcCCccCHHHHHHHHHHHHHc----------CCCEEEEEec-CCCcCCH----
Confidence 00111 3579999999999999999999999999998 9999999998 9998853
Q ss_pred HHHHHHHHHHHHHHHh
Q 003878 768 MIDEAADRYGFMAKML 783 (789)
Q Consensus 768 ~~~~~~~~~~fl~~~l 783 (789)
++++.+..|+...+
T Consensus 193 --e~~~~~~~wl~~~~ 206 (207)
T COG0400 193 --EELEAARSWLANTL 206 (207)
T ss_pred --HHHHHHHHHHHhcc
Confidence 34456666887654
|
|
| >TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.8e-11 Score=124.80 Aligned_cols=108 Identities=17% Similarity=0.099 Sum_probs=75.9
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
+.|.||++||+++.... +......++.+.||.|+.+|.||.|...... ......+++++.+.+..+++. .+
T Consensus 24 ~~~~vl~~hG~~g~~~~--~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~ 94 (288)
T TIGR01250 24 EKIKLLLLHGGPGMSHE--YLENLRELLKEEGREVIMYDQLGCGYSDQPD-----DSDELWTIDYFVDELEEVREK--LG 94 (288)
T ss_pred CCCeEEEEcCCCCccHH--HHHHHHHHHHhcCCEEEEEcCCCCCCCCCCC-----cccccccHHHHHHHHHHHHHH--cC
Confidence 35788999998776432 2223456666459999999999977532100 001124566666666666654 23
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
.+++.++|+|+||.++..++.++|++++++|+..++.
T Consensus 95 ~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 131 (288)
T TIGR01250 95 LDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLD 131 (288)
T ss_pred CCcEEEEEeehHHHHHHHHHHhCccccceeeEecccc
Confidence 4579999999999999999999999999999877654
|
This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase |
| >PLN02872 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-11 Score=132.89 Aligned_cols=146 Identities=19% Similarity=0.232 Sum_probs=96.8
Q ss_pred CCCCcEEEEEEecCCCceEEEEEEEecCCCC-CCCCccEEEEEcCCCCccCCCCCC---HHHHHHHHcCCeEEEEEeecC
Q 003878 503 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIK-LDGSHPCLLYGYGGFNISVTPSFS---VSRTILMRHLGAVFCIANIRG 578 (789)
Q Consensus 503 ~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~-~~~~~P~ll~~hGg~~~~~~~~~~---~~~~~~l~~~G~~v~~~~~RG 578 (789)
..+|.+|+..+++.|| ..+.+.-+.+.... ...+.|.||+.||....+..+... ......|+++||.|.++|.||
T Consensus 39 ~~gy~~e~h~v~T~DG-y~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG 117 (395)
T PLN02872 39 PAGYSCTEHTIQTKDG-YLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRG 117 (395)
T ss_pred HcCCCceEEEEECCCC-cEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccc
Confidence 4478889999999999 88888776433211 123468899999987665543221 122334555999999999999
Q ss_pred CCC-CChhHHhcccc-----cCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC---ceeEEEec
Q 003878 579 GGE-YGEEWHKGGAL-----AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD---LFGCALAH 649 (789)
Q Consensus 579 ~g~-~g~~~~~~~~~-----~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd---~f~a~v~~ 649 (789)
.+. +|......... .+......|+.++++++.+.. .+++.++|||+||.++..++ .+|+ .++++++.
T Consensus 118 ~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l 193 (395)
T PLN02872 118 TRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALL 193 (395)
T ss_pred cccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHh
Confidence 753 33222111111 111233479999999998652 36899999999999998655 5687 46666666
Q ss_pred CCcc
Q 003878 650 VGVM 653 (789)
Q Consensus 650 ~p~~ 653 (789)
+|+.
T Consensus 194 ~P~~ 197 (395)
T PLN02872 194 CPIS 197 (395)
T ss_pred cchh
Confidence 6653
|
|
| >PRK10673 acyl-CoA esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.3e-11 Score=123.62 Aligned_cols=206 Identities=15% Similarity=0.025 Sum_probs=118.2
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCC
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 614 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~ 614 (789)
....|.||++||.++... .|.. ....|. .+|.|+.+|.||.|+.... ...++++..+-+..+++.
T Consensus 13 ~~~~~~iv~lhG~~~~~~--~~~~-~~~~l~-~~~~vi~~D~~G~G~s~~~---------~~~~~~~~~~d~~~~l~~-- 77 (255)
T PRK10673 13 PHNNSPIVLVHGLFGSLD--NLGV-LARDLV-NDHDIIQVDMRNHGLSPRD---------PVMNYPAMAQDLLDTLDA-- 77 (255)
T ss_pred CCCCCCEEEECCCCCchh--HHHH-HHHHHh-hCCeEEEECCCCCCCCCCC---------CCCCHHHHHHHHHHHHHH--
Confidence 345689999999876643 3333 344555 7899999999998764321 112344443333333332
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecC--Ccccccccc-----------cccCCc-----cchhhcCCCC-
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV--GVMDMLRYH-----------KFTIGH-----AWVSDFGCSE- 675 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~--p~~d~~~~~-----------~~~~~~-----~~~~e~g~p~- 675 (789)
...+++.++|+|+||.++..++.++|++++++|+.. |........ ...... .+....-...
T Consensus 78 l~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (255)
T PRK10673 78 LQIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLNEEG 157 (255)
T ss_pred cCCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcCCHH
Confidence 234579999999999999999999999999988753 221100000 000000 0000000000
Q ss_pred -----------------cHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhcc
Q 003878 676 -----------------EEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCT 738 (789)
Q Consensus 676 -----------------~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~ 738 (789)
.+.....+.....+..+..+ ..|+|+++|++|..|+......+.+.+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~P~l~i~G~~D~~~~~~~~~~~~~~~~~---- 223 (255)
T PRK10673 158 VIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAW----------PHPALFIRGGNSPYVTEAYRDDLLAQFPQ---- 223 (255)
T ss_pred HHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCC----------CCCeEEEECCCCCCCCHHHHHHHHHhCCC----
Confidence 00000011111111112222 57999999999999998776666554432
Q ss_pred CCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 739 SLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 739 ~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
+.+.+++++||....... ......+..||.+
T Consensus 224 ----------~~~~~~~~~gH~~~~~~p--~~~~~~l~~fl~~ 254 (255)
T PRK10673 224 ----------ARAHVIAGAGHWVHAEKP--DAVLRAIRRYLND 254 (255)
T ss_pred ----------cEEEEeCCCCCeeeccCH--HHHHHHHHHHHhc
Confidence 467888999998654333 3455677778754
|
|
| >TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily | Back alignment and domain information |
|---|
Probab=99.31 E-value=8e-11 Score=126.67 Aligned_cols=122 Identities=15% Similarity=0.128 Sum_probs=81.5
Q ss_pred EEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccc
Q 003878 512 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 591 (789)
Q Consensus 512 ~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~ 591 (789)
++...|| .+|.+... + ..+.|.||++||+++..... .....+...+|.|+++|.||.|.....
T Consensus 8 ~~~~~~~-~~l~y~~~---g---~~~~~~lvllHG~~~~~~~~----~~~~~~~~~~~~vi~~D~~G~G~S~~~------ 70 (306)
T TIGR01249 8 YLNVSDN-HQLYYEQS---G---NPDGKPVVFLHGGPGSGTDP----GCRRFFDPETYRIVLFDQRGCGKSTPH------ 70 (306)
T ss_pred eEEcCCC-cEEEEEEC---c---CCCCCEEEEECCCCCCCCCH----HHHhccCccCCEEEEECCCCCCCCCCC------
Confidence 4555678 77765432 1 11235689999987654321 122334347999999999997643211
Q ss_pred ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 592 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 592 ~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
.......++|+.+.+..+++.- ..+++.++|+|+||.+++.++.++|++++++|+..++
T Consensus 71 ~~~~~~~~~~~~~dl~~l~~~l--~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~ 129 (306)
T TIGR01249 71 ACLEENTTWDLVADIEKLREKL--GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIF 129 (306)
T ss_pred CCcccCCHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccc
Confidence 1111244567777777776652 3458999999999999999999999999988877654
|
This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-09 Score=111.73 Aligned_cols=228 Identities=14% Similarity=0.097 Sum_probs=141.5
Q ss_pred EEeeeccccceeeeeeec---------ccccce-EEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCC
Q 003878 216 YLFSLVKSTIYSFWSVVS---------QFKFSS-IAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTK 285 (789)
Q Consensus 216 ~~~~s~~~g~~~l~~~~~---------~~~~~~-~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~ 285 (789)
++|+||.+|..|||++++ .++..- =.-+.|||+|+|+... .||+++-.+.
T Consensus 238 vYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~G--------------------dIylydP~td 297 (668)
T COG4946 238 VYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNAG--------------------DIYLYDPETD 297 (668)
T ss_pred EEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEEecCC--------------------cEEEeCCCcC
Confidence 499999999999999998 111111 1235599999998532 1455544433
Q ss_pred CCCcEEEE---e-cCCCC------eeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEee
Q 003878 286 QSEDILCW---K-DPEHP------KYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL 355 (789)
Q Consensus 286 ~~~~~~~~---~-~~~~~------~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l 355 (789)
.-+..-|- . .++.+ .+....+. -+|.++++.+. ...++++...+. ..++
T Consensus 298 ~lekldI~lpl~rk~k~~k~~~pskyledfa~-~~Gd~ia~VSR------GkaFi~~~~~~~--------------~iqv 356 (668)
T COG4946 298 SLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAV-VNGDYIALVSR------GKAFIMRPWDGY--------------SIQV 356 (668)
T ss_pred cceeeecCCccccccccccccCHHHhhhhhcc-CCCcEEEEEec------CcEEEECCCCCe--------------eEEc
Confidence 32221110 0 11111 11111222 27888887762 346777665532 1222
Q ss_pred eccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEE
Q 003878 356 IDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIR 435 (789)
Q Consensus 356 ~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~ 435 (789)
-......|..++.+++.+++-++.+ -.|-.+|..+++ .+.+.+.- ..|+.+.++++++.++..... -+|+++
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dg---D~l~iyd~~~~e-~kr~e~~l--g~I~av~vs~dGK~~vvaNdr--~el~vi 428 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDG---DKLGIYDKDGGE-VKRIEKDL--GNIEAVKVSPDGKKVVVANDR--FELWVI 428 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCC---ceEEEEecCCce-EEEeeCCc--cceEEEEEcCCCcEEEEEcCc--eEEEEE
Confidence 2222345656666777777666553 368888988876 45444333 678999999866666656554 489999
Q ss_pred ECCCCceeeecccC-CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeee
Q 003878 436 DLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRE 495 (789)
Q Consensus 436 dl~tG~~~~~l~~~-~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~ 495 (789)
|+++|+. +.+... .+-+..+.+++++..+++++-+----..+.+||+.+++ .-..+.
T Consensus 429 didngnv-~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K--iy~vTT 486 (668)
T COG4946 429 DIDNGNV-RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK--IYDVTT 486 (668)
T ss_pred EecCCCe-eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe--EEEecC
Confidence 9999987 666543 56677889999999999888654455678889998884 444443
|
|
| >PRK03592 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-10 Score=121.93 Aligned_cols=113 Identities=14% Similarity=0.111 Sum_probs=77.1
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCc
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQ 596 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~ 596 (789)
+| .++.+... +..|.||++||.++... .|.. ....|.+++ .|+++|.||.|..... ...
T Consensus 15 ~g-~~i~y~~~--------G~g~~vvllHG~~~~~~--~w~~-~~~~L~~~~-~via~D~~G~G~S~~~--------~~~ 73 (295)
T PRK03592 15 LG-SRMAYIET--------GEGDPIVFLHGNPTSSY--LWRN-IIPHLAGLG-RCLAPDLIGMGASDKP--------DID 73 (295)
T ss_pred CC-EEEEEEEe--------CCCCEEEEECCCCCCHH--HHHH-HHHHHhhCC-EEEEEcCCCCCCCCCC--------CCC
Confidence 77 77654432 23478999999876543 3333 344555355 9999999998864321 111
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 597 NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 597 ~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
.++++..+.+..+++. ...+++.++|+|+||.+++.++.++|++++++|+..++
T Consensus 74 ~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~ 127 (295)
T PRK03592 74 YTFADHARYLDAWFDA--LGLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAI 127 (295)
T ss_pred CCHHHHHHHHHHHHHH--hCCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCC
Confidence 2445554444444444 23368999999999999999999999999999988763
|
|
| >PLN02824 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.3e-11 Score=127.30 Aligned_cols=109 Identities=13% Similarity=0.035 Sum_probs=74.8
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
.|.||++||..+.+. .|... ...|. ..|.|+++|.||.|.....- ..........+++|+.+.+..+++.- ..
T Consensus 29 ~~~vlllHG~~~~~~--~w~~~-~~~L~-~~~~vi~~DlpG~G~S~~~~-~~~~~~~~~~~~~~~a~~l~~~l~~l--~~ 101 (294)
T PLN02824 29 GPALVLVHGFGGNAD--HWRKN-TPVLA-KSHRVYAIDLLGYGYSDKPN-PRSAPPNSFYTFETWGEQLNDFCSDV--VG 101 (294)
T ss_pred CCeEEEECCCCCChh--HHHHH-HHHHH-hCCeEEEEcCCCCCCCCCCc-cccccccccCCHHHHHHHHHHHHHHh--cC
Confidence 478999999766543 44443 34455 34699999999988643210 00000012346677766666666542 23
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 618 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
+++.++|||+||.+++.++.++|++++++|+..|..
T Consensus 102 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~ 137 (294)
T PLN02824 102 DPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISL 137 (294)
T ss_pred CCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCc
Confidence 689999999999999999999999999999987643
|
|
| >COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-10 Score=117.35 Aligned_cols=237 Identities=15% Similarity=0.124 Sum_probs=144.8
Q ss_pred EecCCCceEEE-EEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccc
Q 003878 513 VPSKDGSTKIP-MFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 591 (789)
Q Consensus 513 ~~s~dg~~~i~-~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~ 591 (789)
+...|| --+- .|..-|.+ .+.|+||..||--|++.++ |...+...+.++||.++++|.||.++.-.. ..
T Consensus 54 v~~pdg-~~~~ldw~~~p~~----~~~P~vVl~HGL~G~s~s~-y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~----~p 123 (345)
T COG0429 54 LETPDG-GFIDLDWSEDPRA----AKKPLVVLFHGLEGSSNSP-YARGLMRALSRRGWLVVVFHFRGCSGEANT----SP 123 (345)
T ss_pred EEcCCC-CEEEEeeccCccc----cCCceEEEEeccCCCCcCH-HHHHHHHHHHhcCCeEEEEecccccCCccc----Cc
Confidence 334455 3443 34433433 4569999999988887777 555556666679999999999998753211 11
Q ss_pred ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC---ceeEEEecCCcccccc-ccc-------
Q 003878 592 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD---LFGCALAHVGVMDMLR-YHK------- 660 (789)
Q Consensus 592 ~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd---~f~a~v~~~p~~d~~~-~~~------- 660 (789)
...-....+|+..++++|.+.+. +.++.++|.|+||.+.+..+.+.-+ +-+|++..+|+ |+.. ...
T Consensus 124 ~~yh~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~-Dl~~~~~~l~~~~s~ 200 (345)
T COG0429 124 RLYHSGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPF-DLEACAYRLDSGFSL 200 (345)
T ss_pred ceecccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHH-HHHHHHHHhcCchhh
Confidence 11222335999999999998754 5799999999999555444444322 44555555553 2210 000
Q ss_pred ---------------------c--cCCcc---------chhhcCC----C--CcHHHHHHHHhcCcccCCCCCCCCCCCC
Q 003878 661 ---------------------F--TIGHA---------WVSDFGC----S--EEEEEFYWLIKYSPLHNVRRPWEQNPDK 702 (789)
Q Consensus 661 ---------------------~--~~~~~---------~~~e~g~----p--~~~~~~~~l~~~sP~~~v~~~~~~~~~~ 702 (789)
+ ..+.. -..||-+ | .-++..+++++-|++..+.++
T Consensus 201 ~ly~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~~L~~I------- 273 (345)
T COG0429 201 RLYSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQASSLPLLPKI------- 273 (345)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCCcHHHHHHhcccccccccc-------
Confidence 0 00000 0011111 1 112344668899999999998
Q ss_pred CCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCC-CC-ch-hhHHHHHHHHHHHH
Q 003878 703 PFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGV-GL-PT-QKMIDEAADRYGFM 779 (789)
Q Consensus 703 ~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~-~~-~~-~~~~~~~~~~~~fl 779 (789)
..|+||+|+.+|+.+++..--+.-.. . ...++|.+.+.+||.+ -. .. +...=.-+.+.+||
T Consensus 274 ---r~PtLii~A~DDP~~~~~~iP~~~~~---~----------np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l 337 (345)
T COG0429 274 ---RKPTLIINAKDDPFMPPEVIPKLQEM---L----------NPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWL 337 (345)
T ss_pred ---ccceEEEecCCCCCCChhhCCcchhc---C----------CCceEEEeecCCceEEeccCccccchhhHHHHHHHHH
Confidence 78999999999999987542222111 2 4568899999999953 22 11 11111235688999
Q ss_pred HHHhCC
Q 003878 780 AKMLGA 785 (789)
Q Consensus 780 ~~~l~~ 785 (789)
...+..
T Consensus 338 ~~~~~~ 343 (345)
T COG0429 338 DPFLEA 343 (345)
T ss_pred HHHHhh
Confidence 887653
|
|
| >TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.3e-11 Score=121.69 Aligned_cols=95 Identities=15% Similarity=0.061 Sum_probs=66.1
Q ss_pred cEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCC
Q 003878 539 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSR 618 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~ 618 (789)
|.||++||..+.. ..|.. ....|. .+|.|+.+|+||.|.... ....+++++. +.+.+.. .+
T Consensus 5 ~~iv~~HG~~~~~--~~~~~-~~~~l~-~~~~vi~~d~~G~G~s~~---------~~~~~~~~~~---~~~~~~~---~~ 65 (245)
T TIGR01738 5 VHLVLIHGWGMNA--EVFRC-LDEELS-AHFTLHLVDLPGHGRSRG---------FGPLSLADAA---EAIAAQA---PD 65 (245)
T ss_pred ceEEEEcCCCCch--hhHHH-HHHhhc-cCeEEEEecCCcCccCCC---------CCCcCHHHHH---HHHHHhC---CC
Confidence 7899999964432 23332 345666 689999999999775321 1122344444 3444331 26
Q ss_pred cEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 619 KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 619 ~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
++.++|+|+||.+++.++.++|++++++|+..+.
T Consensus 66 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~ 99 (245)
T TIGR01738 66 PAIWLGWSLGGLVALHIAATHPDRVRALVTVASS 99 (245)
T ss_pred CeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCC
Confidence 8999999999999999999999999999876543
|
This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria. |
| >PLN02965 Probable pheophorbidase | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-10 Score=118.56 Aligned_cols=212 Identities=12% Similarity=0.116 Sum_probs=120.7
Q ss_pred EEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC-C
Q 003878 540 CLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS-R 618 (789)
Q Consensus 540 ~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~-~ 618 (789)
+||++||..... ..|... ...|.++||.|+++|.||.|..... .....+++++.+-+..+++. .+. .
T Consensus 5 ~vvllHG~~~~~--~~w~~~-~~~L~~~~~~via~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~--l~~~~ 72 (255)
T PLN02965 5 HFVFVHGASHGA--WCWYKL-ATLLDAAGFKSTCVDLTGAGISLTD-------SNTVSSSDQYNRPLFALLSD--LPPDH 72 (255)
T ss_pred EEEEECCCCCCc--CcHHHH-HHHHhhCCceEEEecCCcCCCCCCC-------ccccCCHHHHHHHHHHHHHh--cCCCC
Confidence 499999976543 344443 3455448999999999998854211 11134466666655555554 222 5
Q ss_pred cEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc---ccc---ccc--cccCCccchh---------------------
Q 003878 619 KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM---DML---RYH--KFTIGHAWVS--------------------- 669 (789)
Q Consensus 619 ~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~---d~~---~~~--~~~~~~~~~~--------------------- 669 (789)
++.++|||+||.++..++.++|++++++|...+.. ... ... .......|..
T Consensus 73 ~~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (255)
T PLN02965 73 KVILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVR 152 (255)
T ss_pred CEEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHH
Confidence 89999999999999999999999999998876542 100 000 0000000000
Q ss_pred h--cCCCCcHHHHHHHHhc-Cc--ccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCC
Q 003878 670 D--FGCSEEEEEFYWLIKY-SP--LHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSP 744 (789)
Q Consensus 670 e--~g~p~~~~~~~~l~~~-sP--~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~ 744 (789)
. +.. ...+........ .+ .........-.........|+|+++|++|..+|+..+..+.+.+...
T Consensus 153 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~~a--------- 222 (255)
T PLN02965 153 HYYYNQ-SPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFDPVRQDVMVENWPPA--------- 222 (255)
T ss_pred HHHhcC-CCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhCCcc---------
Confidence 0 011 000111111110 01 10000000000000013679999999999999998887777665533
Q ss_pred CCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 745 QTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 745 ~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
++.+++++||.......+ +..+.+.+|+.
T Consensus 223 -----~~~~i~~~GH~~~~e~p~--~v~~~l~~~~~ 251 (255)
T PLN02965 223 -----QTYVLEDSDHSAFFSVPT--TLFQYLLQAVS 251 (255)
T ss_pred -----eEEEecCCCCchhhcCHH--HHHHHHHHHHH
Confidence 688889999997654443 44555666654
|
|
| >TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-10 Score=120.28 Aligned_cols=220 Identities=14% Similarity=0.054 Sum_probs=130.1
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCC
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 595 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~ 595 (789)
.+| .+|.++.. .+ +...|.||++||..+... .|.. ....|. ++|.|+++|+||.|..... ..
T Consensus 9 ~~~-~~~~~~~~--~~---~~~~~plvllHG~~~~~~--~w~~-~~~~L~-~~~~vi~~Dl~G~G~S~~~--------~~ 70 (276)
T TIGR02240 9 LDG-QSIRTAVR--PG---KEGLTPLLIFNGIGANLE--LVFP-FIEALD-PDLEVIAFDVPGVGGSSTP--------RH 70 (276)
T ss_pred cCC-cEEEEEEe--cC---CCCCCcEEEEeCCCcchH--HHHH-HHHHhc-cCceEEEECCCCCCCCCCC--------CC
Confidence 367 77766543 11 112367899999655433 3443 345566 6899999999998864321 11
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccc------c-ccccC-----
Q 003878 596 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR------Y-HKFTI----- 663 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~------~-~~~~~----- 663 (789)
..+++++.+.++.+++. .+.+++.++|+|+||.+++.++.++|++++++|+.++...... . .....
T Consensus 71 ~~~~~~~~~~~~~~i~~--l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (276)
T TIGR02240 71 PYRFPGLAKLAARMLDY--LDYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRRYI 148 (276)
T ss_pred cCcHHHHHHHHHHHHHH--hCcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchhhh
Confidence 23456666555555554 2446899999999999999999999999999999876543210 0 00000
Q ss_pred Cc-----cchhhcCCC--CcHHHH-----------------HHHHh--cCcccCCCCCCCCCCCCCCCCCeEEEEecCCC
Q 003878 664 GH-----AWVSDFGCS--EEEEEF-----------------YWLIK--YSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 717 (789)
Q Consensus 664 ~~-----~~~~e~g~p--~~~~~~-----------------~~l~~--~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D 717 (789)
.. .....++.. .+++.. ..+.. ......+.++ ..|+|+++|++|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~P~lii~G~~D 218 (276)
T TIGR02240 149 QPSHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKI----------QQPTLVLAGDDD 218 (276)
T ss_pred ccccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcC----------CCCEEEEEeCCC
Confidence 00 000001100 011100 00000 0011112232 579999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHH
Q 003878 718 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 718 ~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 782 (789)
..+|+.++.++.+.+... ++.++++ ||....... .+....+.+|+.+.
T Consensus 219 ~~v~~~~~~~l~~~~~~~--------------~~~~i~~-gH~~~~e~p--~~~~~~i~~fl~~~ 266 (276)
T TIGR02240 219 PIIPLINMRLLAWRIPNA--------------ELHIIDD-GHLFLITRA--EAVAPIIMKFLAEE 266 (276)
T ss_pred CcCCHHHHHHHHHhCCCC--------------EEEEEcC-CCchhhccH--HHHHHHHHHHHHHh
Confidence 999999888887665432 5556654 998655433 35667788888764
|
This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. |
| >PRK03204 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-10 Score=122.70 Aligned_cols=103 Identities=14% Similarity=0.026 Sum_probs=75.0
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
..|.||++||..... ..|.. ....|. ++|.|+++|.||.|..+.. ......++++.+.+..++++ .+
T Consensus 33 ~~~~iv~lHG~~~~~--~~~~~-~~~~l~-~~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~~~~~~~~--~~ 99 (286)
T PRK03204 33 TGPPILLCHGNPTWS--FLYRD-IIVALR-DRFRCVAPDYLGFGLSERP-------SGFGYQIDEHARVIGEFVDH--LG 99 (286)
T ss_pred CCCEEEEECCCCccH--HHHHH-HHHHHh-CCcEEEEECCCCCCCCCCC-------CccccCHHHHHHHHHHHHHH--hC
Confidence 347899999975322 22332 345566 6899999999998754321 11123567888888887776 24
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
.+++.++|+|+||.++..++..+|++++++|+..+.
T Consensus 100 ~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~ 135 (286)
T PRK03204 100 LDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTW 135 (286)
T ss_pred CCCEEEEEECccHHHHHHHHHhChhheeEEEEECcc
Confidence 468999999999999999999999999999876553
|
|
| >TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-10 Score=119.09 Aligned_cols=103 Identities=15% Similarity=0.121 Sum_probs=73.1
Q ss_pred cEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHH-HHHHHHcCCCCC
Q 003878 539 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISA-SEYLISAGYTQS 617 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~-~~~L~~~~~~d~ 617 (789)
|+||++||..+... .|.. ....|. +||.|+.+|.||.|..... ......++++.... +..+.+. .+.
T Consensus 2 ~~vv~~hG~~~~~~--~~~~-~~~~L~-~~~~v~~~d~~g~G~s~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~ 69 (251)
T TIGR03695 2 PVLVFLHGFLGSGA--DWQA-LIELLG-PHFRCLAIDLPGHGSSQSP------DEIERYDFEEAAQDILATLLDQ--LGI 69 (251)
T ss_pred CEEEEEcCCCCchh--hHHH-HHHHhc-ccCeEEEEcCCCCCCCCCC------CccChhhHHHHHHHHHHHHHHH--cCC
Confidence 78999999765433 3333 345555 7999999999997754211 11123445555554 5555544 245
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 618 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
+++.++|||+||.++..++.++|+.++++++..+..
T Consensus 70 ~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~ 105 (251)
T TIGR03695 70 EPFFLVGYSMGGRIALYYALQYPERVQGLILESGSP 105 (251)
T ss_pred CeEEEEEeccHHHHHHHHHHhCchheeeeEEecCCC
Confidence 789999999999999999999999999999877654
|
This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. |
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.7e-10 Score=114.65 Aligned_cols=214 Identities=12% Similarity=0.002 Sum_probs=132.7
Q ss_pred EEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC--CCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHH
Q 003878 510 QVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT--PSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWH 587 (789)
Q Consensus 510 ~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~--~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~ 587 (789)
.+.+++..| . +-++++.|.+ .++.|+||++||..+.... ..+. .....|+++||.|+.+|+||.|.......
T Consensus 2 ~~~l~~~~g-~-~~~~~~~p~~---~~~~~~VlllHG~g~~~~~~~~~~~-~la~~La~~Gy~Vl~~Dl~G~G~S~g~~~ 75 (266)
T TIGR03101 2 PFFLDAPHG-F-RFCLYHPPVA---VGPRGVVIYLPPFAEEMNKSRRMVA-LQARAFAAGGFGVLQIDLYGCGDSAGDFA 75 (266)
T ss_pred CEEecCCCC-c-EEEEEecCCC---CCCceEEEEECCCcccccchhHHHH-HHHHHHHHCCCEEEEECCCCCCCCCCccc
Confidence 356677777 3 4466665654 2457999999995432211 1122 12345555999999999999875432211
Q ss_pred hcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc----c--
Q 003878 588 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK----F-- 661 (789)
Q Consensus 588 ~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~----~-- 661 (789)
. ..-..-.+|+.+++++|.+.+ ..+|+++|+|+||.+++.++.++|+.++++|+..|+++...+.. +
T Consensus 76 ~----~~~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~~lrl~~ 148 (266)
T TIGR03101 76 A----ARWDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLRLRL 148 (266)
T ss_pred c----CCHHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHHHHHHHH
Confidence 1 011123588899999998764 36899999999999999999999999999999999887543321 0
Q ss_pred ----cCCcc------c---------hhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEec-CCCCCCC
Q 003878 662 ----TIGHA------W---------VSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTA-DHDDRVV 721 (789)
Q Consensus 662 ----~~~~~------~---------~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g-~~D~~V~ 721 (789)
..+.. . ..-.|-.-.++..+.|.+......+. ...++|++.. ..+..-.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~~ 217 (266)
T TIGR03101 149 VARRLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVP-----------KNCPVHWFEVRPEEGATL 217 (266)
T ss_pred HHHhccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCC-----------CCCceEEEEeccccCCCC
Confidence 00000 0 00112222233334444432221111 1345666655 3344455
Q ss_pred cHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCC
Q 003878 722 PLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKA 757 (789)
Q Consensus 722 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~ 757 (789)
.....++.+++++. |..++...+++.
T Consensus 218 ~~~~~~l~~~~~~~----------g~~v~~~~~~~~ 243 (266)
T TIGR03101 218 SPVFSRLGEQWVQS----------GVEVTVDLVPGP 243 (266)
T ss_pred CHHHHHHHHHHHHc----------CCeEeeeecCCc
Confidence 56778999999998 999999999877
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-11 Score=122.55 Aligned_cols=186 Identities=15% Similarity=0.071 Sum_probs=113.6
Q ss_pred EEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcE
Q 003878 541 LLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKL 620 (789)
Q Consensus 541 ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i 620 (789)
||++||..+.. ..|.. ....|+ +||.|+++|.||.|.....- .....++++..+.+..+++. ...+++
T Consensus 1 vv~~hG~~~~~--~~~~~-~~~~l~-~~~~v~~~d~~G~G~s~~~~------~~~~~~~~~~~~~l~~~l~~--~~~~~~ 68 (228)
T PF12697_consen 1 VVFLHGFGGSS--ESWDP-LAEALA-RGYRVIAFDLPGHGRSDPPP------DYSPYSIEDYAEDLAELLDA--LGIKKV 68 (228)
T ss_dssp EEEE-STTTTG--GGGHH-HHHHHH-TTSEEEEEECTTSTTSSSHS------SGSGGSHHHHHHHHHHHHHH--TTTSSE
T ss_pred eEEECCCCCCH--HHHHH-HHHHHh-CCCEEEEEecCCcccccccc------ccCCcchhhhhhhhhhcccc--cccccc
Confidence 78999987654 34444 445666 89999999999977543211 12234556666665555554 222689
Q ss_pred EEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc---------cccC------Cccc----hhhcCCCCcH----
Q 003878 621 CIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH---------KFTI------GHAW----VSDFGCSEEE---- 677 (789)
Q Consensus 621 ~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~---------~~~~------~~~~----~~e~g~p~~~---- 677 (789)
.++|+|+||.+++.++.++|++++++|+..|........ .... ...+ ...+-.+...
T Consensus 69 ~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (228)
T PF12697_consen 69 ILVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLI 148 (228)
T ss_dssp EEEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhccccccccccccccccccccccccccc
Confidence 999999999999999999999999999998877532110 0000 0000 0000011000
Q ss_pred -----HHHHHHH----hcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCc
Q 003878 678 -----EEFYWLI----KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNP 748 (789)
Q Consensus 678 -----~~~~~l~----~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 748 (789)
...+.+. ...+....... ..|+++++|++|..++.....++.+.+. .
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~pvl~i~g~~D~~~~~~~~~~~~~~~~--------------~ 204 (228)
T PF12697_consen 149 RSSRRALAEYLRSNLWQADLSEALPRI----------KVPVLVIHGEDDPIVPPESAEELADKLP--------------N 204 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGS----------SSEEEEEEETTSSSSHHHHHHHHHHHST--------------T
T ss_pred ccccccccccccccccccccccccccc----------CCCeEEeecCCCCCCCHHHHHHHHHHCC--------------C
Confidence 0001111 11122233333 5799999999999998666555554432 3
Q ss_pred EEEEEeCCCCcCCC
Q 003878 749 IIGRIERKAGHGVG 762 (789)
Q Consensus 749 ~~l~~~~~~gH~~~ 762 (789)
+++.+++++||...
T Consensus 205 ~~~~~~~~~gH~~~ 218 (228)
T PF12697_consen 205 AELVVIPGAGHFLF 218 (228)
T ss_dssp EEEEEETTSSSTHH
T ss_pred CEEEEECCCCCccH
Confidence 58899999999853
|
... |
| >PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=117.28 Aligned_cols=162 Identities=17% Similarity=0.076 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc---ccc---CCccch----h
Q 003878 600 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH---KFT---IGHAWV----S 669 (789)
Q Consensus 600 ~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~---~~~---~~~~~~----~ 669 (789)
+-|..|++||.++..+++++|+|+|.|.||.+++.++...| .++|+|+.+|..-+.... ... .+..+. .
T Consensus 4 Eyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~~ 82 (213)
T PF08840_consen 4 EYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISKF 82 (213)
T ss_dssp HHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG-
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhhc
Confidence 55789999999999999999999999999999999999998 799999988743322111 000 000000 0
Q ss_pred hcCCCCcH---HHHHHH------HhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHH-HHHHHHHHHhhccC
Q 003878 670 DFGCSEEE---EEFYWL------IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHS-LKLLATMQYVLCTS 739 (789)
Q Consensus 670 e~g~p~~~---~~~~~l------~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~-~~~~~~L~~~~~~~ 739 (789)
.+..+... ..+... .+.-| +.++ ..|+|+++|++|...|..+. ..+.++|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~a~Ip---vE~i----------~~piLli~g~dD~~WpS~~~a~~i~~rL~~~---- 145 (213)
T PF08840_consen 83 SWNEPGLLRSRYAFELADDKAVEEARIP---VEKI----------KGPILLISGEDDQIWPSSEMAEQIEERLKAA---- 145 (213)
T ss_dssp EE-TTS-EE-TT-B--TTTGGGCCCB-----GGG------------SEEEEEEETT-SSS-HHHHHHHHHHHHHCT----
T ss_pred eecCCcceehhhhhhccccccccccccc---HHHc----------CCCEEEEEeCCCCccchHHHHHHHHHHHHHh----
Confidence 00000000 000000 01112 2222 67999999999999887664 4566678876
Q ss_pred CCCCCCCC--cEEEEEeCCCCcCCCCchh--------------------------hHHHHHHHHHHHHHHHhCC
Q 003878 740 LENSPQTN--PIIGRIERKAGHGVGLPTQ--------------------------KMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 740 ~~~~~~~~--~~~l~~~~~~gH~~~~~~~--------------------------~~~~~~~~~~~fl~~~l~~ 785 (789)
+. +++++.|+++||.+..+.. ...+....+++||.++|+.
T Consensus 146 ------~~~~~~~~l~Y~~aGH~i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~~ 213 (213)
T PF08840_consen 146 ------GFPHNVEHLSYPGAGHLIEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLGQ 213 (213)
T ss_dssp ------T-----EEEEETTB-S---STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH---
T ss_pred ------CCCCcceEEEcCCCCceecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 54 4889999999998642200 2356678899999999973
|
Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B. |
| >PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.5e-10 Score=125.96 Aligned_cols=125 Identities=12% Similarity=0.054 Sum_probs=82.7
Q ss_pred EecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHH---cCCeEEEEEeecCCCCCChhHHhc
Q 003878 513 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMR---HLGAVFCIANIRGGGEYGEEWHKG 589 (789)
Q Consensus 513 ~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~---~~G~~v~~~~~RG~g~~g~~~~~~ 589 (789)
+.+..| .++.+..-.|.+. ...|.||++||..+... .|.......+. ++||.|+++|.||.|.....
T Consensus 180 ~~~~~~-~~l~~~~~gp~~~---~~k~~VVLlHG~~~s~~--~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p---- 249 (481)
T PLN03087 180 WLSSSN-ESLFVHVQQPKDN---KAKEDVLFIHGFISSSA--FWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKP---- 249 (481)
T ss_pred eEeeCC-eEEEEEEecCCCC---CCCCeEEEECCCCccHH--HHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCC----
Confidence 344456 6777766666542 23478999999865542 23221112222 37999999999997754321
Q ss_pred ccccCCcchHHHHHHHHH-HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 590 GALAKKQNCFDDFISASE-YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 590 ~~~~~~~~~~~D~~~~~~-~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
.....++++..+.+. .+++. ...+++.++|||+||+++..++.++|++++++|+..|.
T Consensus 250 ---~~~~ytl~~~a~~l~~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~ 308 (481)
T PLN03087 250 ---ADSLYTLREHLEMIERSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPP 308 (481)
T ss_pred ---CCCcCCHHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCC
Confidence 112234666665553 45544 23468999999999999999999999999999988753
|
|
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-10 Score=125.81 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=76.7
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
+..|.||++||..+.... |.. ....|. ++|.|+++|.||.|.... .....+++++.+.+..+++. .
T Consensus 129 ~~~~~vl~~HG~~~~~~~--~~~-~~~~l~-~~~~v~~~d~~g~G~s~~--------~~~~~~~~~~~~~~~~~~~~--~ 194 (371)
T PRK14875 129 GDGTPVVLIHGFGGDLNN--WLF-NHAALA-AGRPVIALDLPGHGASSK--------AVGAGSLDELAAAVLAFLDA--L 194 (371)
T ss_pred CCCCeEEEECCCCCccch--HHH-HHHHHh-cCCEEEEEcCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHh--c
Confidence 345789999986554332 222 234566 679999999999886532 12234677777777777665 4
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
++.+++++|+|+||+++..++.++|++++++|+..|.
T Consensus 195 ~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~ 231 (371)
T PRK14875 195 GIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPA 231 (371)
T ss_pred CCccEEEEeechHHHHHHHHHHhCchheeEEEEECcC
Confidence 6678999999999999999999999999999988765
|
|
| >PLN02679 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.1e-10 Score=123.93 Aligned_cols=209 Identities=12% Similarity=0.044 Sum_probs=120.4
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
.|.||++||..+... .|... ...|. .+|.|+.+|+||.|..... .....+++++.+.+..+++. ...
T Consensus 88 gp~lvllHG~~~~~~--~w~~~-~~~L~-~~~~via~Dl~G~G~S~~~-------~~~~~~~~~~a~~l~~~l~~--l~~ 154 (360)
T PLN02679 88 GPPVLLVHGFGASIP--HWRRN-IGVLA-KNYTVYAIDLLGFGASDKP-------PGFSYTMETWAELILDFLEE--VVQ 154 (360)
T ss_pred CCeEEEECCCCCCHH--HHHHH-HHHHh-cCCEEEEECCCCCCCCCCC-------CCccccHHHHHHHHHHHHHH--hcC
Confidence 378999999765432 34433 34566 6899999999998754211 01123445555544444443 233
Q ss_pred CcEEEEeeChHHHHHHHHHH-hCCCceeEEEecCCcccccc-----ccc--ccCCcc---------------c-------
Q 003878 618 RKLCIEGGSNGGLLVGACIN-QRPDLFGCALAHVGVMDMLR-----YHK--FTIGHA---------------W------- 667 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~-~~pd~f~a~v~~~p~~d~~~-----~~~--~~~~~~---------------~------- 667 (789)
+++.++|+|+||+++..++. .+|++++++|+..+...+.. ... ...+.. +
T Consensus 155 ~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (360)
T PLN02679 155 KPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRGIASALFNRVKQR 234 (360)
T ss_pred CCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchhhHHHHHHHhcCH
Confidence 68999999999999988776 46999999998765321100 000 000000 0
Q ss_pred --h-----hhcCCC--CcHHHHHHH-------------HhcC-------cccCCCCCCCCCCCCCCCCCeEEEEecCCCC
Q 003878 668 --V-----SDFGCS--EEEEEFYWL-------------IKYS-------PLHNVRRPWEQNPDKPFQYPSTLLLTADHDD 718 (789)
Q Consensus 668 --~-----~e~g~p--~~~~~~~~l-------------~~~s-------P~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~ 718 (789)
. .-++++ ..++..+.+ .++. ....+.+ ...|+|+++|++|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------i~~PtLii~G~~D~ 304 (360)
T PLN02679 235 DNLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPR----------ISLPILVLWGDQDP 304 (360)
T ss_pred HHHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhh----------cCCCEEEEEeCCCC
Confidence 0 001111 011111111 1100 0011222 25799999999999
Q ss_pred CCCcHHH-HHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 719 RVVPLHS-LKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 719 ~V~~~~~-~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
.+|+..+ .++.+.+.+. -...++.+++++||....... .+..+.+.+||.+
T Consensus 305 ~~p~~~~~~~~~~~l~~~----------ip~~~l~~i~~aGH~~~~E~P--e~~~~~I~~FL~~ 356 (360)
T PLN02679 305 FTPLDGPVGKYFSSLPSQ----------LPNVTLYVLEGVGHCPHDDRP--DLVHEKLLPWLAQ 356 (360)
T ss_pred CcCchhhHHHHHHhhhcc----------CCceEEEEcCCCCCCccccCH--HHHHHHHHHHHHh
Confidence 9998743 3455555543 223688999999998765443 3566788889864
|
|
| >PRK06489 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.2e-10 Score=123.94 Aligned_cols=108 Identities=18% Similarity=0.146 Sum_probs=69.5
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHH--------HHHcCCeEEEEEeecCCCCCChhHHhccc-ccCCcchHHHHHHHH-H
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTI--------LMRHLGAVFCIANIRGGGEYGEEWHKGGA-LAKKQNCFDDFISAS-E 607 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~--------~l~~~G~~v~~~~~RG~g~~g~~~~~~~~-~~~~~~~~~D~~~~~-~ 607 (789)
.|.||++||..+....+. ...+.. ++. ++|.|+++|+||.|..... .... ......+++|+.+.+ +
T Consensus 69 gpplvllHG~~~~~~~~~-~~~~~~~l~~~~~~l~~-~~~~Via~Dl~GhG~S~~p--~~~~~~~~~~~~~~~~a~~~~~ 144 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSFL-SPTFAGELFGPGQPLDA-SKYFIILPDGIGHGKSSKP--SDGLRAAFPRYDYDDMVEAQYR 144 (360)
T ss_pred CCeEEEeCCCCCchhhhc-cchhHHHhcCCCCcccc-cCCEEEEeCCCCCCCCCCC--CcCCCCCCCcccHHHHHHHHHH
Confidence 588999999876543321 111211 224 7899999999998753210 0000 001124567776544 3
Q ss_pred HHHHcCCCCCCcEE-EEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 608 YLISAGYTQSRKLC-IEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 608 ~L~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
.+.+. ..-+++. ++|+|+||.+++.++.++|++++++|+.++
T Consensus 145 ~l~~~--lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s 187 (360)
T PRK06489 145 LVTEG--LGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMAS 187 (360)
T ss_pred HHHHh--cCCCceeEEEEECHHHHHHHHHHHhCchhhheeeeecc
Confidence 34443 1224664 899999999999999999999999997755
|
|
| >PLN02894 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-09 Score=121.49 Aligned_cols=107 Identities=13% Similarity=0.025 Sum_probs=68.6
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHH-HHHHHcCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISAS-EYLISAGY 614 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~-~~L~~~~~ 614 (789)
+..|.||++||..+.. ..|... ...|. ++|.|+++|+||.|...+.-.. ........+.+++.+ +++...
T Consensus 103 ~~~p~vvllHG~~~~~--~~~~~~-~~~L~-~~~~vi~~D~rG~G~S~~~~~~---~~~~~~~~~~~~~~i~~~~~~l-- 173 (402)
T PLN02894 103 EDAPTLVMVHGYGASQ--GFFFRN-FDALA-SRFRVIAIDQLGWGGSSRPDFT---CKSTEETEAWFIDSFEEWRKAK-- 173 (402)
T ss_pred CCCCEEEEECCCCcch--hHHHHH-HHHHH-hCCEEEEECCCCCCCCCCCCcc---cccHHHHHHHHHHHHHHHHHHc--
Confidence 3568999999975432 223333 34455 5799999999998764321000 000001112233333 333333
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
+.+++.++|||+||++++.++.++|++++++|+..|.
T Consensus 174 -~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~ 210 (402)
T PLN02894 174 -NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPA 210 (402)
T ss_pred -CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCc
Confidence 4468999999999999999999999999998887654
|
|
| >TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.9e-10 Score=122.39 Aligned_cols=129 Identities=13% Similarity=0.073 Sum_probs=82.5
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCC---------CCCHHH---HHHHHcCCeEEEEEeecC--CCCC
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP---------SFSVSR---TILMRHLGAVFCIANIRG--GGEY 582 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~---------~~~~~~---~~~l~~~G~~v~~~~~RG--~g~~ 582 (789)
+| .+|.+..+-+.+ .+..|.||++||-.++.... .|.... ..++. ++|.|+++|.|| +|..
T Consensus 14 ~~-~~~~y~~~g~~~---~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~-~~~~vi~~D~~G~~~g~s 88 (351)
T TIGR01392 14 SD-VRVAYETYGTLN---AERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDT-DRYFVVCSNVLGGCYGST 88 (351)
T ss_pred CC-ceEEEEeccccC---CCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCC-CceEEEEecCCCCCCCCC
Confidence 45 666555543322 12347899999976644221 122211 13334 899999999999 4443
Q ss_pred Ch-hHHhcccc---cCCcchHHHHHHHHHHHHHcCCCCCCc-EEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 583 GE-EWHKGGAL---AKKQNCFDDFISASEYLISAGYTQSRK-LCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 583 g~-~~~~~~~~---~~~~~~~~D~~~~~~~L~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
+. .+...+.. .....+++|+.+.+..+++.- .-++ +.++|+|+||.++..++.++|++++++|+..+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 161 (351)
T TIGR01392 89 GPSSINPGGRPYGSDFPLITIRDDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATS 161 (351)
T ss_pred CCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccC
Confidence 32 22222111 112356788877777766652 3357 999999999999999999999999999887654
|
This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. |
| >PRK00175 metX homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.4e-10 Score=123.22 Aligned_cols=113 Identities=18% Similarity=0.130 Sum_probs=74.5
Q ss_pred CccEEEEEcCCCCccCCCC-----------CCHHH---HHHHHcCCeEEEEEeecCC--CCCChhHHhc--ccc---cCC
Q 003878 537 SHPCLLYGYGGFNISVTPS-----------FSVSR---TILMRHLGAVFCIANIRGG--GEYGEEWHKG--GAL---AKK 595 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~-----------~~~~~---~~~l~~~G~~v~~~~~RG~--g~~g~~~~~~--~~~---~~~ 595 (789)
..|.||++||..+...... |...+ ..++. .+|.|+++|.+|+ +..+...... +.. ...
T Consensus 47 ~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~-~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~ 125 (379)
T PRK00175 47 RSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDT-DRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFP 125 (379)
T ss_pred CCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCc-cceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCC
Confidence 3689999999877654211 22211 12334 7999999999983 2222211000 000 011
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCc-EEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 596 QNCFDDFISASEYLISAGYTQSRK-LCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
..+++|+.+.+..+++.- .-++ ..++|+|+||.+++.++.++|++++++|+..+.
T Consensus 126 ~~~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 181 (379)
T PRK00175 126 VITIRDWVRAQARLLDAL--GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASS 181 (379)
T ss_pred cCCHHHHHHHHHHHHHHh--CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCC
Confidence 356888888777777652 3356 589999999999999999999999999987653
|
|
| >PRK07581 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.7e-10 Score=123.39 Aligned_cols=112 Identities=15% Similarity=0.107 Sum_probs=66.8
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccc---ccCCcchH-HHHHHHHHHHHH-
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA---LAKKQNCF-DDFISASEYLIS- 611 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~---~~~~~~~~-~D~~~~~~~L~~- 611 (789)
+.|+||+.||..+....+.+.......+...+|.|+++|.||.|........... ......++ +|+.+....|.+
T Consensus 40 ~~~~vll~~~~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 119 (339)
T PRK07581 40 KDNAILYPTWYSGTHQDNEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLTEK 119 (339)
T ss_pred CCCEEEEeCCCCCCcccchhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHHHH
Confidence 4577777777654433322110000134347899999999998864322110000 00011123 444443444554
Q ss_pred cCCCCCCcE-EEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 612 AGYTQSRKL-CIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 612 ~~~~d~~~i-~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
.+. +++ .++|+|+||+++..++.++|++++++|+.++
T Consensus 120 lgi---~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~ 157 (339)
T PRK07581 120 FGI---ERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAG 157 (339)
T ss_pred hCC---CceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeec
Confidence 343 584 7899999999999999999999999887754
|
|
| >PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.2e-11 Score=123.65 Aligned_cols=137 Identities=17% Similarity=0.218 Sum_probs=90.6
Q ss_pred CceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCC----eEEEEEeecCCCCCChhHHhc----
Q 003878 518 GSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLG----AVFCIANIRGGGEYGEEWHKG---- 589 (789)
Q Consensus 518 g~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G----~~v~~~~~RG~g~~g~~~~~~---- 589 (789)
| ..+.++++.|++....++.|+|++.||................+++ .| .++++++.-+.+.....|+..
T Consensus 5 g-~~~~~~VylP~~y~~~~~~PvlylldG~~~~~~~~~~~~~~~~~~~-~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~ 82 (251)
T PF00756_consen 5 G-RDRRVWVYLPPGYDPSKPYPVLYLLDGQSGWFRNGNAQEALDRLIA-EGKIPPMIIVVIPNGDNSRFYTSWYLPAGSS 82 (251)
T ss_dssp T-EEEEEEEEECTTGGTTTTEEEEEEESHTTHHHHHHHHHHHHHHHHH-HHTSEEEEEEEEESSSTSSTTSBTTSSBCTT
T ss_pred C-CeEEEEEEECCCCCCCCCCEEEEEccCCccccccchHHHHHHHHHH-hCCCCceEEEEEecccccccccccccccccc
Confidence 5 7889999999998778899999999995110000011111223444 44 455555554433233344422
Q ss_pred --ccccCCcchHHHHH--HHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccc
Q 003878 590 --GALAKKQNCFDDFI--SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML 656 (789)
Q Consensus 590 --~~~~~~~~~~~D~~--~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~ 656 (789)
.....+...+.+++ +.+.++.++--+++++.+|+|+|+||+.++.++.++||+|.++++.+|.++..
T Consensus 83 ~~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~ 153 (251)
T PF00756_consen 83 RRADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPS 153 (251)
T ss_dssp CBCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETT
T ss_pred cccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCcccccc
Confidence 11122233455554 35666666666677779999999999999999999999999999999988764
|
; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D .... |
| >PRK10439 enterobactin/ferric enterobactin esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.3e-09 Score=117.48 Aligned_cols=218 Identities=15% Similarity=0.103 Sum_probs=131.4
Q ss_pred EEEEEecC-CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCe----EEEEEeecCCCCCC
Q 003878 509 HQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGA----VFCIANIRGGGEYG 583 (789)
Q Consensus 509 ~~~~~~s~-dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~----~v~~~~~RG~g~~g 583 (789)
+.+.+.|. -| .+..+++|.|.+.. .+++|+|++.||.........+ .....+++ .|. +++.+|.-.+....
T Consensus 181 ~~~~~~S~~Lg-~~r~v~VY~P~~y~-~~~~PvlyllDG~~w~~~~~~~-~~ld~li~-~g~i~P~ivV~id~~~~~~R~ 256 (411)
T PRK10439 181 KEIIWKSERLG-NSRRVWIYTTGDAA-PEERPLAILLDGQFWAESMPVW-PALDSLTH-RGQLPPAVYLLIDAIDTTHRS 256 (411)
T ss_pred EEEEEEccccC-CceEEEEEECCCCC-CCCCCEEEEEECHHhhhcCCHH-HHHHHHHH-cCCCCceEEEEECCCCccccc
Confidence 44555553 46 77889999999865 5689999999997654322222 22344555 673 46677642211111
Q ss_pred hhHHhcccccCCcchHHHHH--HHHHHHHHc--CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc
Q 003878 584 EEWHKGGALAKKQNCFDDFI--SASEYLISA--GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH 659 (789)
Q Consensus 584 ~~~~~~~~~~~~~~~~~D~~--~~~~~L~~~--~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~ 659 (789)
.+ ......|.+++ +.+-++.++ -..|+++.+|+|.|+||+.++.++.++|++|.++++.+|-+-+..
T Consensus 257 ~e-------l~~~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ww~~-- 327 (411)
T PRK10439 257 QE-------LPCNADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSFWWPH-- 327 (411)
T ss_pred cc-------CCchHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccceecCC--
Confidence 00 01122343332 223343333 135889999999999999999999999999999999998542110
Q ss_pred cccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccC
Q 003878 660 KFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTS 739 (789)
Q Consensus 660 ~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~ 739 (789)
..+. ......+.+.+. .... ....++|.+|..|... .....++.+.|+++
T Consensus 328 ----------~~~~-~~~~l~~~l~~~----~~~~----------~~lr~~i~~G~~E~~~-~~~~~~l~~~L~~~---- 377 (411)
T PRK10439 328 ----------RGGQ-QEGVLLEQLKAG----EVSA----------RGLRIVLEAGRREPMI-MRANQALYAQLHPA---- 377 (411)
T ss_pred ----------ccCC-chhHHHHHHHhc----ccCC----------CCceEEEeCCCCCchH-HHHHHHHHHHHHHC----
Confidence 0000 000111112220 0111 1346889999988643 56778999999998
Q ss_pred CCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 740 LENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 740 ~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
|.++.+.++++ ||.... ....+.+.+.||.
T Consensus 378 ------G~~~~~~~~~G-GHd~~~----Wr~~L~~~L~~l~ 407 (411)
T PRK10439 378 ------GHSVFWRQVDG-GHDALC----WRGGLIQGLIDLW 407 (411)
T ss_pred ------CCcEEEEECCC-CcCHHH----HHHHHHHHHHHHh
Confidence 99999999976 796421 2234445555553
|
|
| >TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-09 Score=119.33 Aligned_cols=122 Identities=12% Similarity=0.078 Sum_probs=79.1
Q ss_pred EEEEEEecCCCCCCCCccEEEEEcCCCCccCC---CCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcch
Q 003878 522 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT---PSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNC 598 (789)
Q Consensus 522 i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~---~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~ 598 (789)
+.++.+.|... ...+.| ||++||-...... .... .....|.++||.|+++|+||.|.... ......
T Consensus 48 ~~l~~~~~~~~-~~~~~p-vl~v~~~~~~~~~~d~~~~~-~~~~~L~~~G~~V~~~D~~g~g~s~~--------~~~~~d 116 (350)
T TIGR01836 48 VVLYRYTPVKD-NTHKTP-LLIVYALVNRPYMLDLQEDR-SLVRGLLERGQDVYLIDWGYPDRADR--------YLTLDD 116 (350)
T ss_pred EEEEEecCCCC-cCCCCc-EEEeccccccceeccCCCCc-hHHHHHHHCCCeEEEEeCCCCCHHHh--------cCCHHH
Confidence 44444555431 122345 7788874221111 1112 23455555999999999998653211 111112
Q ss_pred H--HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccc
Q 003878 599 F--DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML 656 (789)
Q Consensus 599 ~--~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~ 656 (789)
+ +|+.++++++.++. ..+++.++|||+||.+++.++..+|+.++++|+.+|.+++.
T Consensus 117 ~~~~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~ 174 (350)
T TIGR01836 117 YINGYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFE 174 (350)
T ss_pred HHHHHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccC
Confidence 2 45778899988763 34689999999999999999999999999999998887753
|
This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates. |
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.9e-08 Score=103.82 Aligned_cols=267 Identities=15% Similarity=0.156 Sum_probs=157.2
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCc-eecccccccccccccCccceeeeeecccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI-VEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYL 208 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (789)
+..++.-..+||.|-|+| +|.....++|||....+ .+..++.-.. |
T Consensus 58 H~~~vtVAkySPsG~yiA-----SGD~sG~vRIWdtt~~~hiLKnef~v~a----------------------G------ 104 (603)
T KOG0318|consen 58 HAHQVTVAKYSPSGFYIA-----SGDVSGKVRIWDTTQKEHILKNEFQVLA----------------------G------ 104 (603)
T ss_pred ccceeEEEEeCCCceEEe-----ecCCcCcEEEEeccCcceeeeeeeeecc----------------------c------
Confidence 445666778999999999 78888899999987643 3322222221 1
Q ss_pred ccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCC--CCCC----cccc--------CCcc
Q 003878 209 RGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKD--MDAG----TETD--------SNLY 274 (789)
Q Consensus 209 ~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~--~~~~----~~~~--------~~~~ 274 (789)
+...+.|+.||++|+.+......-..- +|.| +.+. .-++
T Consensus 105 ---------------------------~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kp 157 (603)
T KOG0318|consen 105 ---------------------------PIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKP 157 (603)
T ss_pred ---------------------------ccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccC
Confidence 457899999999999875432110000 1111 1110 0011
Q ss_pred cEEEEEECCCCCCCcEEEEecC---------CCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccc
Q 003878 275 HEFYYHFLGTKQSEDILCWKDP---------EHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 345 (789)
Q Consensus 275 ~~i~~~~lg~~~~~~~~~~~~~---------~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 345 (789)
.+=+|.--+.+ ..-+-+|++| +|..++..+.+||||++++-...+ ..++++|-.+|+.
T Consensus 158 sRPfRi~T~sd-Dn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD-----gki~iyDGktge~------- 224 (603)
T KOG0318|consen 158 SRPFRIATGSD-DNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD-----GKIYIYDGKTGEK------- 224 (603)
T ss_pred CCceEEEeccC-CCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCC-----ccEEEEcCCCccE-------
Confidence 11122111111 1124456665 345566788999999988765443 4589999877531
Q ss_pred cCCCCccEeee---ccccceeEE-EecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCC-CCceeeeEEEecCCEE
Q 003878 346 RDGLLPFVKLI---DGFDAQYEV-IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-ERDVLESATAVNLNQM 420 (789)
Q Consensus 346 ~~~~~~~~~l~---~~~~~~~~~-~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~-~~~~i~~v~~~~~~~l 420 (789)
+-.+. ..-+..|.. |+||+++|+-.+. +..+-.||+.+.+-.+++.-.. -+...-+..|.+ ++|
T Consensus 225 ------vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqk-d~l 293 (603)
T KOG0318|consen 225 ------VGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQK-DHL 293 (603)
T ss_pred ------EEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEEeeccceEEEeecCCchhceEEEEEEeC-CeE
Confidence 11221 111223433 9999999875432 2456667777665223333222 123344677876 677
Q ss_pred EEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 421 IVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 421 v~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+.... +| .|-.+++.+++.++.+..+.-.|..++.++|++.++ |-.--+.|-.|+..+|+
T Consensus 294 ItVSl-~G--~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~----SgsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 294 ITVSL-SG--TINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY----SGSYDGHINSWDSGSGT 353 (603)
T ss_pred EEEEc-Cc--EEEEecccCCChhheecccccceeEEEEcCCCCEEE----eeccCceEEEEecCCcc
Confidence 65444 33 577788887776666666677788899999997655 33456788888888774
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.2e-09 Score=107.05 Aligned_cols=242 Identities=15% Similarity=0.046 Sum_probs=138.2
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
-.+-.+++||||++|| .|+...++++||+.|...+. +..+..
T Consensus 116 e~Vl~~~fsp~g~~l~-----tGsGD~TvR~WD~~TeTp~~-t~KgH~-------------------------------- 157 (480)
T KOG0271|consen 116 EAVLSVQFSPTGSRLV-----TGSGDTTVRLWDLDTETPLF-TCKGHK-------------------------------- 157 (480)
T ss_pred CcEEEEEecCCCceEE-----ecCCCceEEeeccCCCCcce-eecCCc--------------------------------
Confidence 4567889999999999 67778999999999985442 112110
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
-| +..++|||||+.|+-...+ ..|.+|+..+++..-.
T Consensus 158 ----------------~W-------VlcvawsPDgk~iASG~~d-------------------g~I~lwdpktg~~~g~- 194 (480)
T KOG0271|consen 158 ----------------NW-------VLCVAWSPDGKKIASGSKD-------------------GSIRLWDPKTGQQIGR- 194 (480)
T ss_pred ----------------cE-------EEEEEECCCcchhhccccC-------------------CeEEEecCCCCCcccc-
Confidence 01 3789999999999854433 3577887655543211
Q ss_pred EEecCCCCeeEEEEEE-----ecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEE-
Q 003878 292 CWKDPEHPKYIFSGHV-----TEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV- 365 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~-----SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 365 (789)
..+.+..++.+++| .|.+++|+-.+. .+.+.++|+..+ .....+..........
T Consensus 195 --~l~gH~K~It~Lawep~hl~p~~r~las~sk-----Dg~vrIWd~~~~-------------~~~~~lsgHT~~VTCvr 254 (480)
T KOG0271|consen 195 --ALRGHKKWITALAWEPLHLVPPCRRLASSSK-----DGSVRIWDTKLG-------------TCVRTLSGHTASVTCVR 254 (480)
T ss_pred --cccCcccceeEEeecccccCCCccceecccC-----CCCEEEEEccCc-------------eEEEEeccCccceEEEE
Confidence 12234555666665 568887764442 345777887653 1222333222212222
Q ss_pred EecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEe-------------c----------------
Q 003878 366 IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAV-------------N---------------- 416 (789)
Q Consensus 366 ~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~-------------~---------------- 416 (789)
|. |+-+.+.... +..|-+++...+.-.+++-.|. ..+..++++ +
T Consensus 255 wG--G~gliySgS~---DrtIkvw~a~dG~~~r~lkGHa--hwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r 327 (480)
T KOG0271|consen 255 WG--GEGLIYSGSQ---DRTIKVWRALDGKLCRELKGHA--HWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER 327 (480)
T ss_pred Ec--CCceEEecCC---CceEEEEEccchhHHHhhcccc--hheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence 43 3334443333 2345555544432112222222 112222221 1
Q ss_pred -------CCEEEEEEEeCCeEEEEEEECCCC-ceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 417 -------LNQMIVSYLSDVKYVLQIRDLKNG-SLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 417 -------~~~lv~~~~~~g~~~L~~~dl~tG-~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
....+++.+++. .|++|+.... +.+.+.+.+...|..+++|||+..++ ..||.. .+.+||..+|+
T Consensus 328 Y~~~~~~~~erlVSgsDd~--tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IA--SaSFDk--SVkLW~g~tGk 400 (480)
T KOG0271|consen 328 YEAVLKDSGERLVSGSDDF--TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIA--SASFDK--SVKLWDGRTGK 400 (480)
T ss_pred HHHhhccCcceeEEecCCc--eEEEecccccccchhhhhchhhheeeEEECCCccEEE--Eeeccc--ceeeeeCCCcc
Confidence 012467777776 7899987522 34445565666788899999998554 345544 77788888886
|
|
| >PRK10349 carboxylesterase BioH; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-09 Score=114.54 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=66.9
Q ss_pred cEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCC
Q 003878 539 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSR 618 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~ 618 (789)
|.||++||..+.. ..|.. ....|. ..|.|+++|.||.|.... ....+++++.+ .+++.+ .+
T Consensus 14 ~~ivllHG~~~~~--~~w~~-~~~~L~-~~~~vi~~Dl~G~G~S~~---------~~~~~~~~~~~---~l~~~~---~~ 74 (256)
T PRK10349 14 VHLVLLHGWGLNA--EVWRC-IDEELS-SHFTLHLVDLPGFGRSRG---------FGALSLADMAE---AVLQQA---PD 74 (256)
T ss_pred CeEEEECCCCCCh--hHHHH-HHHHHh-cCCEEEEecCCCCCCCCC---------CCCCCHHHHHH---HHHhcC---CC
Confidence 5699999965443 24444 345566 679999999999875321 11234444433 444432 46
Q ss_pred cEEEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 619 KLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 619 ~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
++.++|||+||.++..++.++|++++.+|+..+
T Consensus 75 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~ 107 (256)
T PRK10349 75 KAIWLGWSLGGLVASQIALTHPERVQALVTVAS 107 (256)
T ss_pred CeEEEEECHHHHHHHHHHHhChHhhheEEEecC
Confidence 899999999999999999999999999987655
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-07 Score=99.74 Aligned_cols=244 Identities=12% Similarity=0.026 Sum_probs=143.6
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccccee
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFF 213 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 213 (789)
+..+.+||||+.++.+.. ....|++||+.+++.+.. +....
T Consensus 33 ~~~l~~~~dg~~l~~~~~----~~~~v~~~d~~~~~~~~~-~~~~~---------------------------------- 73 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCAS----DSDTIQVIDLATGEVIGT-LPSGP---------------------------------- 73 (300)
T ss_pred CCceEECCCCCEEEEEEC----CCCeEEEEECCCCcEEEe-ccCCC----------------------------------
Confidence 346789999998754432 234799999999866531 11110
Q ss_pred eEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEE
Q 003878 214 FFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCW 293 (789)
Q Consensus 214 ~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~ 293 (789)
....++|+|||+.++++.. ....++++++.+.. .+..+
T Consensus 74 ----------------------~~~~~~~~~~g~~l~~~~~------------------~~~~l~~~d~~~~~--~~~~~ 111 (300)
T TIGR03866 74 ----------------------DPELFALHPNGKILYIANE------------------DDNLVTVIDIETRK--VLAEI 111 (300)
T ss_pred ----------------------CccEEEECCCCCEEEEEcC------------------CCCeEEEEECCCCe--EEeEe
Confidence 1356889999998876532 12358888887532 12222
Q ss_pred ecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEE
Q 003878 294 KDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVF 373 (789)
Q Consensus 294 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l 373 (789)
+... ....+.++|||+++++.... ...++.+|..++. .......+.......|+++|+.|
T Consensus 112 ~~~~---~~~~~~~~~dg~~l~~~~~~----~~~~~~~d~~~~~-------------~~~~~~~~~~~~~~~~s~dg~~l 171 (300)
T TIGR03866 112 PVGV---EPEGMAVSPDGKIVVNTSET----TNMAHFIDTKTYE-------------IVDNVLVDQRPRFAEFTADGKEL 171 (300)
T ss_pred eCCC---CcceEEECCCCCEEEEEecC----CCeEEEEeCCCCe-------------EEEEEEcCCCccEEEECCCCCEE
Confidence 2111 12468899999999876532 2346667876531 11111111122334589999988
Q ss_pred EEEECCCCCCceEEEEECCCCCCeEEeccCCC-----CceeeeEEEecCCE-EEEEEEeCCeEEEEEEECCCCceeeecc
Q 003878 374 TFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAE-----RDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGSLLHQLP 447 (789)
Q Consensus 374 ~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~-----~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl~tG~~~~~l~ 447 (789)
++.+.. ...|..+|+++++....+..+.. .....++.+++++. +++....+ .+|.+||+++++....+.
T Consensus 172 ~~~~~~---~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~--~~i~v~d~~~~~~~~~~~ 246 (300)
T TIGR03866 172 WVSSEI---GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA--NRVAVVDAKTYEVLDYLL 246 (300)
T ss_pred EEEcCC---CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC--CeEEEEECCCCcEEEEEE
Confidence 765432 35789999987652222211110 11123566776544 44433333 368999998777644443
Q ss_pred cCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 448 IEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 448 ~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.. ..+..++++|+++.++.+. ..-+.+..||+.+++
T Consensus 247 ~~-~~~~~~~~~~~g~~l~~~~---~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 247 VG-QRVWQLAFTPDEKYLLTTN---GVSNDVSVIDVAALK 282 (300)
T ss_pred eC-CCcceEEECCCCCEEEEEc---CCCCeEEEEECCCCc
Confidence 22 2355678899999776532 234579999999885
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1838 consensus Alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.6e-09 Score=111.70 Aligned_cols=241 Identities=15% Similarity=0.075 Sum_probs=150.6
Q ss_pred cEEEEEEecCCCceEEEEEEEecCCCC---CCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCC
Q 003878 507 HVHQVFVPSKDGSTKIPMFIVSKKNIK---LDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 583 (789)
Q Consensus 507 ~~~~~~~~s~dg~~~i~~~l~~p~~~~---~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g 583 (789)
..++..++.+|| -.+..-++.+.+.. ..+..|++|++||-.|.+....-.. ....+.++||.+++.|.||.++--
T Consensus 92 ~y~Reii~~~DG-G~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~-lv~~a~~~G~r~VVfN~RG~~g~~ 169 (409)
T KOG1838|consen 92 EYTREIIKTSDG-GTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRH-LVHEAQRKGYRVVVFNHRGLGGSK 169 (409)
T ss_pred cceeEEEEeCCC-CEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHH-HHHHHHhCCcEEEEECCCCCCCCc
Confidence 335555666788 78888777665531 1357799999999888776644333 334445599999999999954311
Q ss_pred hhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC---CceeEEEecCCcccc--ccc
Q 003878 584 EEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRP---DLFGCALAHVGVMDM--LRY 658 (789)
Q Consensus 584 ~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p---d~f~a~v~~~p~~d~--~~~ 658 (789)
- -.....-...-+|+.++++++.++ +-+ .++.++|.|+||.+....+.+.- .+.+|++..+|+--. .+.
T Consensus 170 L----tTpr~f~ag~t~Dl~~~v~~i~~~-~P~-a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~~~~~~ 243 (409)
T KOG1838|consen 170 L----TTPRLFTAGWTEDLREVVNHIKKR-YPQ-APLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLLAASRS 243 (409)
T ss_pred c----CCCceeecCCHHHHHHHHHHHHHh-CCC-CceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchhhhhhhH
Confidence 0 001111122348999999999987 333 37999999999999999888753 377888888886421 000
Q ss_pred c-------------------------c--ccCCcc------------ch-----hhcCCCCcHHHHHHHHhcCcccCCCC
Q 003878 659 H-------------------------K--FTIGHA------------WV-----SDFGCSEEEEEFYWLIKYSPLHNVRR 694 (789)
Q Consensus 659 ~-------------------------~--~~~~~~------------~~-----~e~g~p~~~~~~~~l~~~sP~~~v~~ 694 (789)
. . +..... +. ..||-+. .-+++++-|+...+++
T Consensus 244 ~~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~---~deYY~~aSs~~~v~~ 320 (409)
T KOG1838|consen 244 IETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKS---VDEYYKKASSSNYVDK 320 (409)
T ss_pred HhcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCc---HHHHHhhcchhhhccc
Confidence 0 0 000000 00 0123333 2245788899999999
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcC-CCCch--hhHHHH
Q 003878 695 PWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHG-VGLPT--QKMIDE 771 (789)
Q Consensus 695 ~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~-~~~~~--~~~~~~ 771 (789)
+ ..|+|++++.+|+.||.. +.-.-+..+ +.-+.+.+-..+||- +.... .. .-+
T Consensus 321 I----------~VP~L~ina~DDPv~p~~-~ip~~~~~~------------np~v~l~~T~~GGHlgfleg~~p~~-~~w 376 (409)
T KOG1838|consen 321 I----------KVPLLCINAADDPVVPEE-AIPIDDIKS------------NPNVLLVITSHGGHLGFLEGLWPSA-RTW 376 (409)
T ss_pred c----------cccEEEEecCCCCCCCcc-cCCHHHHhc------------CCcEEEEEeCCCceeeeeccCCCcc-chh
Confidence 8 899999999999999875 222222222 335677777889994 32221 21 233
Q ss_pred HHH-HHHHHHHH
Q 003878 772 AAD-RYGFMAKM 782 (789)
Q Consensus 772 ~~~-~~~fl~~~ 782 (789)
+.+ ..+|+...
T Consensus 377 ~~~~l~ef~~~~ 388 (409)
T KOG1838|consen 377 MDKLLVEFLGNA 388 (409)
T ss_pred HHHHHHHHHHHH
Confidence 444 66666554
|
|
| >PLN02578 hydrolase | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-09 Score=118.86 Aligned_cols=98 Identities=10% Similarity=-0.027 Sum_probs=65.6
Q ss_pred cEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcch-HHHHHHHHHHHHHcCCCCC
Q 003878 539 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNC-FDDFISASEYLISAGYTQS 617 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~-~~D~~~~~~~L~~~~~~d~ 617 (789)
|.||++||..+.. ..|.. ....|+ ++|.|+++|+||.|....... ...... .+|+.+.++.+. .
T Consensus 87 ~~vvliHG~~~~~--~~w~~-~~~~l~-~~~~v~~~D~~G~G~S~~~~~-----~~~~~~~a~~l~~~i~~~~------~ 151 (354)
T PLN02578 87 LPIVLIHGFGASA--FHWRY-NIPELA-KKYKVYALDLLGFGWSDKALI-----EYDAMVWRDQVADFVKEVV------K 151 (354)
T ss_pred CeEEEECCCCCCH--HHHHH-HHHHHh-cCCEEEEECCCCCCCCCCccc-----ccCHHHHHHHHHHHHHHhc------c
Confidence 5578999965542 22332 234566 689999999999886543210 111111 134444444432 3
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 618 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
+++.++|||+||+++..++.++|++++++|+..+
T Consensus 152 ~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~ 185 (354)
T PLN02578 152 EPAVLVGNSLGGFTALSTAVGYPELVAGVALLNS 185 (354)
T ss_pred CCeEEEEECHHHHHHHHHHHhChHhcceEEEECC
Confidence 5799999999999999999999999999987654
|
|
| >KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.8e-09 Score=106.24 Aligned_cols=117 Identities=14% Similarity=0.103 Sum_probs=78.9
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccC
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 594 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~ 594 (789)
.-+| .+++...- + .+..|++|++||-+....++.+.. ..|+.+||.|+++|.||.|.... ....
T Consensus 28 ~~~g-I~~h~~e~---g---~~~gP~illlHGfPe~wyswr~q~---~~la~~~~rviA~DlrGyG~Sd~------P~~~ 91 (322)
T KOG4178|consen 28 TYKG-IRLHYVEG---G---PGDGPIVLLLHGFPESWYSWRHQI---PGLASRGYRVIAPDLRGYGFSDA------PPHI 91 (322)
T ss_pred EEcc-EEEEEEee---c---CCCCCEEEEEccCCccchhhhhhh---hhhhhcceEEEecCCCCCCCCCC------CCCc
Confidence 3456 55544333 2 356799999999988766666543 44566999999999999775321 1111
Q ss_pred CcchHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecC
Q 003878 595 KQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV 650 (789)
Q Consensus 595 ~~~~~~D~~~~~~~L~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~ 650 (789)
-.-++.-+..-+..|++. | -+|+.+.||++|++++..++.++|++..+.|+..
T Consensus 92 ~~Yt~~~l~~di~~lld~Lg---~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~n 145 (322)
T KOG4178|consen 92 SEYTIDELVGDIVALLDHLG---LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLN 145 (322)
T ss_pred ceeeHHHHHHHHHHHHHHhc---cceeEEEeccchhHHHHHHHHhChhhcceEEEec
Confidence 122333333333333332 3 3699999999999999999999999999998763
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.7e-08 Score=97.10 Aligned_cols=232 Identities=13% Similarity=0.139 Sum_probs=141.8
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+...+..+.+|+||++.. +++-..++++||+++|+... .+.+. -.
T Consensus 62 HsH~v~dv~~s~dg~~al-----S~swD~~lrlWDl~~g~~t~-~f~GH------~~----------------------- 106 (315)
T KOG0279|consen 62 HSHFVSDVVLSSDGNFAL-----SASWDGTLRLWDLATGESTR-RFVGH------TK----------------------- 106 (315)
T ss_pred cceEecceEEccCCceEE-----eccccceEEEEEecCCcEEE-EEEec------CC-----------------------
Confidence 445688999999998754 34556699999999996543 22221 00
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
..-++++|||+++|+-. .+...|.+|+.-+.. .
T Consensus 107 --------------------------dVlsva~s~dn~qivSG-------------------SrDkTiklwnt~g~c--k 139 (315)
T KOG0279|consen 107 --------------------------DVLSVAFSTDNRQIVSG-------------------SRDKTIKLWNTLGVC--K 139 (315)
T ss_pred --------------------------ceEEEEecCCCceeecC-------------------CCcceeeeeeecccE--E
Confidence 35789999999999732 345567777754321 1
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEec
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIAN 368 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~ 368 (789)
..+.++. +..++.-+.|||...-..|.+. +. ...+.++|+.+-. .......... ..+..+||
T Consensus 140 ~t~~~~~-~~~WVscvrfsP~~~~p~Ivs~-s~--DktvKvWnl~~~~-------------l~~~~~gh~~~v~t~~vSp 202 (315)
T KOG0279|consen 140 YTIHEDS-HREWVSCVRFSPNESNPIIVSA-SW--DKTVKVWNLRNCQ-------------LRTTFIGHSGYVNTVTVSP 202 (315)
T ss_pred EEEecCC-CcCcEEEEEEcCCCCCcEEEEc-cC--CceEEEEccCCcc-------------hhhccccccccEEEEEECC
Confidence 2222222 2567778899999633333332 12 3457888988731 0111111111 12345899
Q ss_pred CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc
Q 003878 369 DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI 448 (789)
Q Consensus 369 dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~ 448 (789)
||..... ++..++++++|++.++....+ .+ ...+.++.++++...+...... .|.+||++++..+..+.+
T Consensus 203 DGslcas----Ggkdg~~~LwdL~~~k~lysl-~a--~~~v~sl~fspnrywL~~at~~---sIkIwdl~~~~~v~~l~~ 272 (315)
T KOG0279|consen 203 DGSLCAS----GGKDGEAMLWDLNEGKNLYSL-EA--FDIVNSLCFSPNRYWLCAATAT---SIKIWDLESKAVVEELKL 272 (315)
T ss_pred CCCEEec----CCCCceEEEEEccCCceeEec-cC--CCeEeeEEecCCceeEeeccCC---ceEEEeccchhhhhhccc
Confidence 9986652 566799999999988743322 22 3678899999943333333332 499999998776565554
Q ss_pred C-Ce--------eEEEeecccCCcEEEEEEc
Q 003878 449 E-IG--------SVNAISARREDSVVFISFT 470 (789)
Q Consensus 449 ~-~~--------~v~~~s~s~d~~~l~~~~s 470 (789)
. .+ ...+++++.||..++--++
T Consensus 273 d~~g~s~~~~~~~clslaws~dG~tLf~g~t 303 (315)
T KOG0279|consen 273 DGIGPSSKAGDPICLSLAWSADGQTLFAGYT 303 (315)
T ss_pred cccccccccCCcEEEEEEEcCCCcEEEeeec
Confidence 3 11 1224567778877775554
|
|
| >KOG3101 consensus Esterase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.1e-10 Score=106.05 Aligned_cols=239 Identities=14% Similarity=0.086 Sum_probs=145.3
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEe--ecCCCCCCh----------
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIAN--IRGGGEYGE---------- 584 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~--~RG~g~~g~---------- 584 (789)
-+ +.|..-+|.|++...+++.|+|.|.-|-.....+-.-...+.+...+.|.+|+.|| .||-.--|+
T Consensus 24 l~-c~Mtf~vylPp~a~~~k~~P~lf~LSGLTCT~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GA 102 (283)
T KOG3101|consen 24 LK-CSMTFGVYLPPDAPRGKRCPVLFYLSGLTCTHENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGA 102 (283)
T ss_pred cc-cceEEEEecCCCcccCCcCceEEEecCCcccchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCc
Confidence 35 78888999999876677799999999975443321112234566677999999998 466422222
Q ss_pred hHHhccccc-CCc--chHHHHHHHHHHHHHc--CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc
Q 003878 585 EWHKGGALA-KKQ--NCFDDFISASEYLISA--GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH 659 (789)
Q Consensus 585 ~~~~~~~~~-~~~--~~~~D~~~~~~~L~~~--~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~ 659 (789)
.|+.....+ |+. ..++-+..-+-.++.. --+|+.+++|.||||||.-++.+..++|.+|+.+.+.+|+++...-.
T Consensus 103 GFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~cp 182 (283)
T KOG3101|consen 103 GFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPINCP 182 (283)
T ss_pred eeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcccCc
Confidence 222222211 111 1122222222222221 23699999999999999999999999999999999999999864421
Q ss_pred cccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHH--HHHHHHHHHHhhc
Q 003878 660 KFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH--SLKLLATMQYVLC 737 (789)
Q Consensus 660 ~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~--~~~~~~~L~~~~~ 737 (789)
= .. ..+....|+ +++.+ .+|++-+.+++.. -..--+||-+|.+|...+ +| +..+.++.+..
T Consensus 183 W-Gq-KAf~gYLG~--~ka~W---~~yDat~lik~y~-------~~~~~ilIdqG~~D~Fl~-~qLlPe~l~~a~~~~-- 245 (283)
T KOG3101|consen 183 W-GQ-KAFTGYLGD--NKAQW---EAYDATHLIKNYR-------GVGDDILIDQGAADNFLA-EQLLPENLLEACKAT-- 245 (283)
T ss_pred c-hH-HHhhcccCC--ChHHH---hhcchHHHHHhcC-------CCCccEEEecCccchhhh-hhcChHHHHHHhhcc--
Confidence 0 00 001111233 44444 5566655555430 012248999999998876 33 55565555532
Q ss_pred cCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 738 TSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 738 ~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
...++.++.-++-.|..--- ...+++-.++-.+.|+
T Consensus 246 -------~~~~v~~r~~~gyDHSYyfI----aTFv~dHi~hHA~~L~ 281 (283)
T KOG3101|consen 246 -------WQAPVVFRLQEGYDHSYYFI----ATFVADHIEHHAKNLN 281 (283)
T ss_pred -------ccccEEEEeecCCCcceeee----hhhhHHHHHHHHHHhc
Confidence 36899999999999975321 2334444455555554
|
|
| >KOG4667 consensus Predicted esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.7e-09 Score=100.14 Aligned_cols=199 Identities=17% Similarity=0.143 Sum_probs=133.9
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCC
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 614 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~ 614 (789)
.+..-++|++|| +.+.-+.-+....+..+++.|+.++.+|++|-|+....++-. +.....+|+..+++++...
T Consensus 30 tgs~e~vvlcHG-frS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~~G----n~~~eadDL~sV~q~~s~~-- 102 (269)
T KOG4667|consen 30 TGSTEIVVLCHG-FRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFYYG----NYNTEADDLHSVIQYFSNS-- 102 (269)
T ss_pred cCCceEEEEeec-cccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCccccC----cccchHHHHHHHHHHhccC--
Confidence 356789999999 444444444555677888899999999999999865554422 2233349999999998763
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCc---cchhhcCC---C---------CcHHH
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGH---AWVSDFGC---S---------EEEEE 679 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~---~~~~e~g~---p---------~~~~~ 679 (789)
...--+|.|||-||..++..+...++ ..-+|...|-.|.......+.++ .|..+-|. + -.++.
T Consensus 103 -nr~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~eRlg~~~l~~ike~Gfid~~~rkG~y~~rvt~eS 180 (269)
T KOG4667|consen 103 -NRVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGINERLGEDYLERIKEQGFIDVGPRKGKYGYRVTEES 180 (269)
T ss_pred -ceEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchhhhhcccHHHHHHhCCceecCcccCCcCceecHHH
Confidence 22234799999999999999999887 66677777777765554322222 12222121 1 11111
Q ss_pred H-HHHHh-cCc-ccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCC
Q 003878 680 F-YWLIK-YSP-LHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERK 756 (789)
Q Consensus 680 ~-~~l~~-~sP-~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~ 756 (789)
. +.|.. .+| ...+++ .+|+|-+||..|..||.+.|.+|++.+... .|.+.++
T Consensus 181 lmdrLntd~h~aclkId~-----------~C~VLTvhGs~D~IVPve~AkefAk~i~nH--------------~L~iIEg 235 (269)
T KOG4667|consen 181 LMDRLNTDIHEACLKIDK-----------QCRVLTVHGSEDEIVPVEDAKEFAKIIPNH--------------KLEIIEG 235 (269)
T ss_pred HHHHHhchhhhhhcCcCc-----------cCceEEEeccCCceeechhHHHHHHhccCC--------------ceEEecC
Confidence 1 11110 011 112333 689999999999999999999998887643 7899999
Q ss_pred CCcCCCCchhh
Q 003878 757 AGHGVGLPTQK 767 (789)
Q Consensus 757 ~gH~~~~~~~~ 767 (789)
+.|.+.....+
T Consensus 236 ADHnyt~~q~~ 246 (269)
T KOG4667|consen 236 ADHNYTGHQSQ 246 (269)
T ss_pred CCcCccchhhh
Confidence 99999765443
|
|
| >KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.8e-10 Score=106.43 Aligned_cols=181 Identities=13% Similarity=0.126 Sum_probs=127.9
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
...|+++++||||+...+..-......-+.++||.|+.++|--+.+ ...-..++.|+...++|+.+. +-
T Consensus 65 ~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~q----------~htL~qt~~~~~~gv~filk~-~~ 133 (270)
T KOG4627|consen 65 NQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCPQ----------VHTLEQTMTQFTHGVNFILKY-TE 133 (270)
T ss_pred CCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCcc----------cccHHHHHHHHHHHHHHHHHh-cc
Confidence 4679999999999887765544333333445999999998754321 122245678999999998876 44
Q ss_pred CCCcEEEEeeChHHHHHHHHHHh-CCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcc-cCCC
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQ-RPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPL-HNVR 693 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~-~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~-~~v~ 693 (789)
..++|.+.|||+|+.|++.+.++ +.-++.+++..+|+.++.....++.+ ...|.-++. ....||. ...+
T Consensus 134 n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~~te~g----~dlgLt~~~-----ae~~Scdl~~~~ 204 (270)
T KOG4627|consen 134 NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELSNTESG----NDLGLTERN-----AESVSCDLWEYT 204 (270)
T ss_pred cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHhCCccc----cccCcccch-----hhhcCccHHHhc
Confidence 56789999999999998876654 44488899999999998665543332 122222221 1233432 2233
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcC
Q 003878 694 RPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHG 760 (789)
Q Consensus 694 ~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~ 760 (789)
.. .-++|++.+..|.---++|.+.|++.++++ .+..+++.+|.
T Consensus 205 ~v----------~~~ilVv~~~~espklieQnrdf~~q~~~a--------------~~~~f~n~~hy 247 (270)
T KOG4627|consen 205 DV----------TVWILVVAAEHESPKLIEQNRDFADQLRKA--------------SFTLFKNYDHY 247 (270)
T ss_pred Cc----------eeeeeEeeecccCcHHHHhhhhHHHHhhhc--------------ceeecCCcchh
Confidence 32 458999999999988899999999999876 67888999996
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-07 Score=100.58 Aligned_cols=312 Identities=11% Similarity=0.085 Sum_probs=149.7
Q ss_pred EeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceee
Q 003878 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFF 214 (789)
Q Consensus 135 ~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 214 (789)
..-.|.+||++|+|..+..| ..+++++||+|+++++.+-.... . +.+.+..|+.+.++|.+.....
T Consensus 39 ~~~~ft~dG~kllF~s~~dg--~~nly~lDL~t~~i~QLTdg~g~----~--------~~g~~~s~~~~~~~Yv~~~~~l 104 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDG--NRNLYLLDLATGEITQLTDGPGD----N--------TFGGFLSPDDRALYYVKNGRSL 104 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTS--S-EEEEEETTT-EEEE---SS-B-------------TTT-EE-TTSSEEEEEETTTEE
T ss_pred cCCCcCCCCCEEEEEeccCC--CcceEEEEcccCEEEECccCCCC----C--------ccceEEecCCCeEEEEECCCeE
Confidence 35568999999999988776 57899999999988763311100 0 1135566777655555543222
Q ss_pred EEEeeeccccceeeeeeecccccceEEEEe--CCcEEEEEEccCCCCC--CCCC-CCccccCCcccEEEEEECCCCCCCc
Q 003878 215 FYLFSLVKSTIYSFWSVVSQFKFSSIAWTH--DSKGFFYSRYPAPKEG--KDMD-AGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~~~~~~~~~wsp--Dg~~i~y~~~~~~~~~--~~~~-~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
.-+=+.. -+.-.||.++-.++ +...|+. |++.++..+....+.. .++. ....-...-..+|+..++.+++ .
T Consensus 105 ~~vdL~T-~e~~~vy~~p~~~~-g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~ 180 (386)
T PF14583_consen 105 RRVDLDT-LEERVVYEVPDDWK-GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--R 180 (386)
T ss_dssp EEEETTT---EEEEEE--TTEE-EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----E
T ss_pred EEEECCc-CcEEEEEECCcccc-cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--e
Confidence 1111111 12235666655555 4567753 5777766654321100 0000 0000012345679999998764 4
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcC-CCC-ceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEe
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEEN-CDP-VNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIA 367 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~-~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s 367 (789)
..++++. .++.-+.+||..-.++..+.++ .+. ..+||+++.++.. ..++.+...+.......|+
T Consensus 181 ~~v~~~~---~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-----------~~~v~~~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 181 KVVFEDT---DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN-----------VKKVHRRMEGESVGHEFWV 246 (386)
T ss_dssp EEEEEES---S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS--------------EESS---TTEEEEEEEE-
T ss_pred eEEEecC---ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc-----------ceeeecCCCCccccccccc
Confidence 5666653 3566788888555554444444 333 3589999987642 1112222233333567899
Q ss_pred cCCCEEEEEEC-CCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCC--------------eEEE
Q 003878 368 NDDTVFTFLTN-KDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV--------------KYVL 432 (789)
Q Consensus 368 ~dG~~l~~~tn-~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g--------------~~~L 432 (789)
+||..|++..- .++..+-|+.+++++++ ...+.+.+. -..+..+.++.|++.--.+. .+-|
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~--~~~~~~~p~--~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i 322 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGE--RRRLMEMPW--CSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWI 322 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT----EEEEEEE-S--EEEEEE-TTSSEEEEEE-------------------EE
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCC--ceEEEeCCc--eeeeEEcCCCCEEEecCCCCCccccccccceecCCcEE
Confidence 99999888654 44556789999999876 222222221 22344445455654432221 2367
Q ss_pred EEEECCCCceeeecccCC---------e--eEEEeecccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 433 QIRDLKNGSLLHQLPIEI---------G--SVNAISARREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 433 ~~~dl~tG~~~~~l~~~~---------~--~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
++++++.+.. ..|.... . .--.++++||++.|+|+ |++.-++.||..++.
T Consensus 323 ~~~~~~~~~~-~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~-Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 323 YLFDVEAGRF-RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFR-SDMEGPPAVYLVEIP 383 (386)
T ss_dssp EEEETTTTEE-EEEEE-------BTTBSSTT----EE-TTSSEEEEE-E-TTSS-EEEEEE--
T ss_pred EEeccccCce-eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEE-CCCCCCccEEEEeCc
Confidence 8888876653 2222110 0 11246789999998876 566888999998764
|
|
| >PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.6e-09 Score=110.67 Aligned_cols=196 Identities=16% Similarity=0.132 Sum_probs=124.6
Q ss_pred HHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHH-cCCCCCCcEEEEeeChHHHHHHHHHHh
Q 003878 560 RTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLIS-AGYTQSRKLCIEGGSNGGLLVGACINQ 638 (789)
Q Consensus 560 ~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~-~~~~d~~~i~i~G~S~GG~l~~~~~~~ 638 (789)
+..+|+ +||+|+++||-|-|. .|... .......-|.+.|++.+.. .|.....+++++|+|.||.-+++++..
T Consensus 19 l~~~L~-~GyaVv~pDY~Glg~---~y~~~---~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l 91 (290)
T PF03583_consen 19 LAAWLA-RGYAVVAPDYEGLGT---PYLNG---RSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAEL 91 (290)
T ss_pred HHHHHH-CCCEEEecCCCCCCC---cccCc---HhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHH
Confidence 466777 999999999988654 22111 1112334566666665554 354445799999999999999887754
Q ss_pred ----CCCc---eeEEEecCCcccccccccccCCccc---------------------hhhcCCCC---------------
Q 003878 639 ----RPDL---FGCALAHVGVMDMLRYHKFTIGHAW---------------------VSDFGCSE--------------- 675 (789)
Q Consensus 639 ----~pd~---f~a~v~~~p~~d~~~~~~~~~~~~~---------------------~~e~g~p~--------------- 675 (789)
.||+ +.++++..|..|+..+.....+..+ ..++.+|.
T Consensus 92 ~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~~ 171 (290)
T PF03583_consen 92 APSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLAD 171 (290)
T ss_pred hHHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHHH
Confidence 3676 7899999898887654321111000 00000010
Q ss_pred --------------------------cHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHH
Q 003878 676 --------------------------EEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLL 729 (789)
Q Consensus 676 --------------------------~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~ 729 (789)
++...+.+...+. ... .......|++|.||.+|..||+....+++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~-------~~~~P~~Pv~i~~g~~D~vvP~~~~~~l~ 242 (290)
T PF03583_consen 172 IVAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSL--GMG-------GDWTPTVPVLIYQGTADEVVPPADTDALV 242 (290)
T ss_pred HHHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhc--ccc-------CCCCCCCCEEEEecCCCCCCChHHHHHHH
Confidence 0011111111111 000 11123579999999999999999999999
Q ss_pred HHHHHhhccCCCCCCCC-CcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCC
Q 003878 730 ATMQYVLCTSLENSPQT-NPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 730 ~~L~~~~~~~~~~~~~~-~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
+++.+. | .+++++.++..+|.... .......++||...+...
T Consensus 243 ~~~c~~----------G~a~V~~~~~~~~~H~~~~-----~~~~~~a~~Wl~~rf~G~ 285 (290)
T PF03583_consen 243 AKWCAA----------GGADVEYVRYPGGGHLGAA-----FASAPDALAWLDDRFAGK 285 (290)
T ss_pred HHHHHc----------CCCCEEEEecCCCChhhhh-----hcCcHHHHHHHHHHHCCC
Confidence 999988 8 79999999999997542 223356789999888554
|
Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process |
| >PRK08775 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.5e-09 Score=113.72 Aligned_cols=74 Identities=15% Similarity=0.033 Sum_probs=53.4
Q ss_pred CCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCc-EEEEeeChHHHHHHHHHHhCCCceeE
Q 003878 567 LGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRK-LCIEGGSNGGLLVGACINQRPDLFGC 645 (789)
Q Consensus 567 ~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~pd~f~a 645 (789)
.+|.|+++|.||.|.... ....++|..+.+..+++.- +-++ +.++|+|+||++++.++.++|+++++
T Consensus 98 ~~~~Vi~~Dl~G~g~s~~----------~~~~~~~~a~dl~~ll~~l--~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~ 165 (343)
T PRK08775 98 ARFRLLAFDFIGADGSLD----------VPIDTADQADAIALLLDAL--GIARLHAFVGYSYGALVGLQFASRHPARVRT 165 (343)
T ss_pred cccEEEEEeCCCCCCCCC----------CCCCHHHHHHHHHHHHHHc--CCCcceEEEEECHHHHHHHHHHHHChHhhhe
Confidence 689999999998764210 1123455555555555431 2235 57999999999999999999999999
Q ss_pred EEecCCc
Q 003878 646 ALAHVGV 652 (789)
Q Consensus 646 ~v~~~p~ 652 (789)
+|+..+.
T Consensus 166 LvLi~s~ 172 (343)
T PRK08775 166 LVVVSGA 172 (343)
T ss_pred EEEECcc
Confidence 9988764
|
|
| >PLN02211 methyl indole-3-acetate methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-08 Score=107.07 Aligned_cols=107 Identities=20% Similarity=0.181 Sum_probs=75.6
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCC
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 614 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~ 614 (789)
.+..|.||++||..+.. ..|.. ....|.++||.|+++|+||.|.... ......++++..+.+..++++-.
T Consensus 15 ~~~~p~vvliHG~~~~~--~~w~~-~~~~L~~~g~~vi~~dl~g~G~s~~-------~~~~~~~~~~~~~~l~~~i~~l~ 84 (273)
T PLN02211 15 NRQPPHFVLIHGISGGS--WCWYK-IRCLMENSGYKVTCIDLKSAGIDQS-------DADSVTTFDEYNKPLIDFLSSLP 84 (273)
T ss_pred cCCCCeEEEECCCCCCc--CcHHH-HHHHHHhCCCEEEEecccCCCCCCC-------CcccCCCHHHHHHHHHHHHHhcC
Confidence 45678999999976543 34443 3455655899999999999774210 01122566666665555554421
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
..+++.++|||+||+++..++.++|++++++|...+.
T Consensus 85 -~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~ 121 (273)
T PLN02211 85 -ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAAT 121 (273)
T ss_pred -CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccc
Confidence 2368999999999999999999999999999987664
|
|
| >cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.9e-10 Score=126.83 Aligned_cols=228 Identities=18% Similarity=0.130 Sum_probs=132.8
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCC-eEEEEEeec-CCCCCChhHHhcccc
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLG-AVFCIANIR-GGGEYGEEWHKGGAL 592 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G-~~v~~~~~R-G~g~~g~~~~~~~~~ 592 (789)
+.|- +.+.++.|......++.|+||++|||.......... ....++.+.+ ++|+.+||| |..+|...-. ..
T Consensus 75 sEdc---l~l~i~~p~~~~~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~---~~ 147 (493)
T cd00312 75 SEDC---LYLNVYTPKNTKPGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGD---IE 147 (493)
T ss_pred CCcC---CeEEEEeCCCCCCCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCC---CC
Confidence 4455 566777887644456789999999996544443332 1234454344 999999999 5545543211 12
Q ss_pred cCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHh--CCCceeEEEecCCcccccccccccC---C
Q 003878 593 AKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVMDMLRYHKFTI---G 664 (789)
Q Consensus 593 ~~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~pd~f~a~v~~~p~~d~~~~~~~~~---~ 664 (789)
..+...+.|.++|++|+.++ --.||++|.|+|+|+||.++.+++.. .+.+|+++|+++|............ .
T Consensus 148 ~~~n~g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~~~~~~ 227 (493)
T cd00312 148 LPGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSALSPWAIQENARGRA 227 (493)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCccCcccccccHHHHH
Confidence 23344578999999999876 23699999999999999999988876 2458999999988665322111110 0
Q ss_pred ccchhhcCCCC--cHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCC
Q 003878 665 HAWVSDFGCSE--EEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLEN 742 (789)
Q Consensus 665 ~~~~~e~g~p~--~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~ 742 (789)
.......|+.. ..+..+.|++.++...++.. ..... ......+...-.-|..+-+.++.++.+.=+
T Consensus 228 ~~~~~~lgc~~~~~~~~l~cLr~~~~~~l~~a~-~~~~~--~~~~~~~~f~PvvDg~~lp~~p~~~~~~g~--------- 295 (493)
T cd00312 228 KRLARLLGCNDTSSAELLDCLRSKSAEELLDAT-RKLLL--FSYSPFLPFGPVVDGDFIPDDPEELIKEGK--------- 295 (493)
T ss_pred HHHHHHcCCCCCCHHHHHHHHhcCCHHHHHHHH-Hhhcc--ccccCccceeeecCCCCCCcCHHHHHhcCC---------
Confidence 11223456652 23345667766543322211 00000 000011111222344455555555443222
Q ss_pred CCCCCcEEEEEeCCCCcCCC
Q 003878 743 SPQTNPIIGRIERKAGHGVG 762 (789)
Q Consensus 743 ~~~~~~~~l~~~~~~gH~~~ 762 (789)
..++|+.+-...++|..+.
T Consensus 296 -~~~vPvLiG~t~dEg~~f~ 314 (493)
T cd00312 296 -FAKVPLIIGVTKDEGGYFA 314 (493)
T ss_pred -CCCCCEEEEEeccchhhhH
Confidence 2278999988888887643
|
) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate. |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.7e-08 Score=103.37 Aligned_cols=271 Identities=21% Similarity=0.204 Sum_probs=158.5
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.+=.+++|++|||||-+... ...-||...-.+.-.+-.++.+ |+-+ ..--.|+||.
T Consensus 226 EVWfl~FS~nGkyLAsaSkD---~Taiiw~v~~d~~~kl~~tlvg------h~~~-----V~yi~wSPDd---------- 281 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKD---STAIIWIVVYDVHFKLKKTLVG------HSQP-----VSYIMWSPDD---------- 281 (519)
T ss_pred cEEEEEEcCCCeeEeeccCC---ceEEEEEEecCcceeeeeeeec------ccCc-----eEEEEECCCC----------
Confidence 35567899999999944321 1223333333332111112211 1111 1112456777
Q ss_pred eeEEEeeeccccceeeeeeec-----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVS-----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHF 281 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~-----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (789)
++|-.+..+....+|.+.- .+...+-+|-|||.+++.... ...++.++
T Consensus 282 --ryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~-------------------dr~i~~wd 340 (519)
T KOG0293|consen 282 --RYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSP-------------------DRTIIMWD 340 (519)
T ss_pred --CeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCC-------------------CCcEEEec
Confidence 4666666677778887765 244578899999999774421 24577777
Q ss_pred CCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc
Q 003878 282 LGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA 361 (789)
Q Consensus 282 lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (789)
++... .-.|+....+ .+..++.|+||++++.... ..++.+++.++..+ + .+...-..
T Consensus 341 lDgn~---~~~W~gvr~~-~v~dlait~Dgk~vl~v~~-----d~~i~l~~~e~~~d-------------r-~lise~~~ 397 (519)
T KOG0293|consen 341 LDGNI---LGNWEGVRDP-KVHDLAITYDGKYVLLVTV-----DKKIRLYNREARVD-------------R-GLISEEQP 397 (519)
T ss_pred CCcch---hhcccccccc-eeEEEEEcCCCcEEEEEec-----ccceeeechhhhhh-------------h-ccccccCc
Confidence 76432 2234444333 3568899999999988763 35577888776310 1 11211111
Q ss_pred ee-EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCc-eeeeEEEec--CCEEEEEEEeCCeEEEEEEEC
Q 003878 362 QY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERD-VLESATAVN--LNQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 362 ~~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~-~i~~v~~~~--~~~lv~~~~~~g~~~L~~~dl 437 (789)
.. -.+|.||+.+. .|.. ...+.++|++.....+....+.... .|.+ .++ ++.+++++++|+ +||+|+.
T Consensus 398 its~~iS~d~k~~L--vnL~--~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS--CFgg~~~~fiaSGSED~--kvyIWhr 469 (519)
T KOG0293|consen 398 ITSFSISKDGKLAL--VNLQ--DQEIHLWDLEENKLVRKYFGHKQGHFIIRS--CFGGGNDKFIASGSEDS--KVYIWHR 469 (519)
T ss_pred eeEEEEcCCCcEEE--EEcc--cCeeEEeecchhhHHHHhhcccccceEEEe--ccCCCCcceEEecCCCc--eEEEEEc
Confidence 11 23678887544 4432 3578899998543112222222212 2222 233 357999999986 8999999
Q ss_pred CCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEE
Q 003878 438 KNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 438 ~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~d 482 (789)
.+|+.+..|+.+...+..++++|....++.+. ..-+++..|-
T Consensus 470 ~sgkll~~LsGHs~~vNcVswNP~~p~m~ASa---sDDgtIRIWg 511 (519)
T KOG0293|consen 470 ISGKLLAVLSGHSKTVNCVSWNPADPEMFASA---SDDGTIRIWG 511 (519)
T ss_pred cCCceeEeecCCcceeeEEecCCCCHHHhhcc---CCCCeEEEec
Confidence 99998888887788888899998887766543 3334444443
|
|
| >COG2272 PnbA Carboxylesterase type B [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=118.82 Aligned_cols=220 Identities=19% Similarity=0.172 Sum_probs=135.9
Q ss_pred ecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCC---CccCCCCCCHHHHHHHHcCC-eEEEEEeecCCCCCCh-hHHh
Q 003878 514 PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF---NISVTPSFSVSRTILMRHLG-AVFCIANIRGGGEYGE-EWHK 588 (789)
Q Consensus 514 ~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~---~~~~~~~~~~~~~~~l~~~G-~~v~~~~~RG~g~~g~-~~~~ 588 (789)
-|.|. +.+-|+.|. .+..+.|+|||+|||. |+...+.|.+. .|+++| ++|+.+|||-|- +|- ++..
T Consensus 75 ~sEDC---L~LNIwaP~--~~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs---~La~~g~vVvVSvNYRLG~-lGfL~~~~ 145 (491)
T COG2272 75 GSEDC---LYLNIWAPE--VPAEKLPVMVYIHGGGYIMGSGSEPLYDGS---ALAARGDVVVVSVNYRLGA-LGFLDLSS 145 (491)
T ss_pred ccccc---eeEEeeccC--CCCCCCcEEEEEeccccccCCCcccccChH---HHHhcCCEEEEEeCccccc-ceeeehhh
Confidence 35676 445566777 3456789999999993 55556667753 344477 999999999653 221 1111
Q ss_pred cc--cccCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhCCC---ceeEEEecCCccccccccc
Q 003878 589 GG--ALAKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQRPD---LFGCALAHVGVMDMLRYHK 660 (789)
Q Consensus 589 ~~--~~~~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~pd---~f~a~v~~~p~~d~~~~~~ 660 (789)
-. ........+.|.+.+++|+.++ ---||++|.|+|.|+|++.++.++.. |. +|+-+|+.+|-.-......
T Consensus 146 ~~~~~~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~~~~s~~ 224 (491)
T COG2272 146 LDTEDAFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAASRVTSRE 224 (491)
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCCccCcHH
Confidence 11 1111125689999999999765 33599999999999999999998886 76 8888888888665222111
Q ss_pred --ccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCC--CCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhh
Q 003878 661 --FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRP--WEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVL 736 (789)
Q Consensus 661 --~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~--~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~ 736 (789)
......+....|.+ .+..+.|++.++-..++.. .+....-...++|++ |+.+-+.++..+.+.-+..
T Consensus 225 ~A~~~a~~f~~~lG~~--~~~~~~L~~~~~~~L~~~~~~~~~~~~~~~~~~p~~------~d~~lp~~P~e~~~~g~~~- 295 (491)
T COG2272 225 EAREKAAAFARALGIP--EATLDKLRALSAEDLVKARLPLIGRTFGAVPYGPVL------GDSLLPRDPLEAIAQGRSH- 295 (491)
T ss_pred HHHHHHHHHHHHhCCC--HHHHHHHhcCCHHHHHhhhhhhccccCCCcCCCCcc------CcccccCChhhhhhccccc-
Confidence 01112234456777 3445556666654433321 000000001234443 4445566777777776655
Q ss_pred ccCCCCCCCCCcEEEEEeCCCCcCC
Q 003878 737 CTSLENSPQTNPIIGRIERKAGHGV 761 (789)
Q Consensus 737 ~~~~~~~~~~~~~~l~~~~~~gH~~ 761 (789)
++|+.+-+.-++|-.+
T Consensus 296 ---------~vpl~iGtn~dEg~~f 311 (491)
T COG2272 296 ---------GVPLMIGTNHDEGSLF 311 (491)
T ss_pred ---------CCcEEeeccCCcceEE
Confidence 8888887777777654
|
|
| >PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-08 Score=101.98 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=87.0
Q ss_pred EEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHH
Q 003878 522 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDD 601 (789)
Q Consensus 522 i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D 601 (789)
.|..+++|+. .+.+|++|+.||-. ....+.......+++.||+|+.++...-. ........++
T Consensus 4 ~~l~v~~P~~---~g~yPVv~f~~G~~---~~~s~Ys~ll~hvAShGyIVV~~d~~~~~-----------~~~~~~~~~~ 66 (259)
T PF12740_consen 4 KPLLVYYPSS---AGTYPVVLFLHGFL---LINSWYSQLLEHVASHGYIVVAPDLYSIG-----------GPDDTDEVAS 66 (259)
T ss_pred CCeEEEecCC---CCCcCEEEEeCCcC---CCHHHHHHHHHHHHhCceEEEEecccccC-----------CCCcchhHHH
Confidence 4678899987 48899999999954 23333444567777799999999954311 1222345677
Q ss_pred HHHHHHHHHHc---C-----CCCCCcEEEEeeChHHHHHHHHHHhC-----CCceeEEEecCCccc
Q 003878 602 FISASEYLISA---G-----YTQSRKLCIEGGSNGGLLVGACINQR-----PDLFGCALAHVGVMD 654 (789)
Q Consensus 602 ~~~~~~~L~~~---~-----~~d~~~i~i~G~S~GG~l~~~~~~~~-----pd~f~a~v~~~p~~d 654 (789)
+.+.++||.+. . -.|-+||+|+|||.||-++..++.++ +.+|+|+|+..|+--
T Consensus 67 ~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG 132 (259)
T PF12740_consen 67 AAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDG 132 (259)
T ss_pred HHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccc
Confidence 88889998762 1 14778999999999999999988887 558999999999763
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-08 Score=105.06 Aligned_cols=99 Identities=13% Similarity=0.035 Sum_probs=69.6
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
.|.||++||..+... .|... ...+ ++|.|+++|.||.|..... ....+++..+-+..+++.- ..
T Consensus 2 ~p~vvllHG~~~~~~--~w~~~-~~~l--~~~~vi~~D~~G~G~S~~~---------~~~~~~~~~~~l~~~l~~~--~~ 65 (242)
T PRK11126 2 LPWLVFLHGLLGSGQ--DWQPV-GEAL--PDYPRLYIDLPGHGGSAAI---------SVDGFADVSRLLSQTLQSY--NI 65 (242)
T ss_pred CCEEEEECCCCCChH--HHHHH-HHHc--CCCCEEEecCCCCCCCCCc---------cccCHHHHHHHHHHHHHHc--CC
Confidence 378999999876543 44433 3445 3799999999998764321 1125666555555555542 34
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCC-ceeEEEecCCc
Q 003878 618 RKLCIEGGSNGGLLVGACINQRPD-LFGCALAHVGV 652 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~pd-~f~a~v~~~p~ 652 (789)
+++.++|||+||.+++.++.++|+ +++++++..+.
T Consensus 66 ~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~ 101 (242)
T PRK11126 66 LPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGN 101 (242)
T ss_pred CCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCC
Confidence 699999999999999999999865 48888876544
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.5e-07 Score=93.59 Aligned_cols=259 Identities=17% Similarity=0.126 Sum_probs=155.9
Q ss_pred cEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccc
Q 003878 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 131 ~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
...+..+.++|||++|+.+.. ...|++||+.+++.... +... . + -.....+.|++
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~-----~g~i~i~~~~~~~~~~~-~~~~------~-~----~i~~~~~~~~~-------- 63 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSG-----DGTIKVWDLETGELLRT-LKGH------T-G----PVRDVAASADG-------- 63 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeec-----CcEEEEEEeeCCCcEEE-EecC------C-c----ceeEEEECCCC--------
Confidence 345788999999999986543 45899999988753221 1110 0 0 00122223333
Q ss_pred ceeeEEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEE
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYH 280 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (789)
..++.+..+|...+|.+.. ......+.|+|+++.++... ....+.++
T Consensus 64 ----~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------------------~~~~i~~~ 120 (289)
T cd00200 64 ----TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS-------------------RDKTIKVW 120 (289)
T ss_pred ----CEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEec-------------------CCCeEEEE
Confidence 3566667788888888764 11245688998866555332 12358888
Q ss_pred ECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-
Q 003878 281 FLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF- 359 (789)
Q Consensus 281 ~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~- 359 (789)
++.+.. ....+. .+...+..+.++|++++++.... ...++++|+.++. .........
T Consensus 121 ~~~~~~--~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~-----~~~i~i~d~~~~~-------------~~~~~~~~~~ 178 (289)
T cd00200 121 DVETGK--CLTTLR--GHTDWVNSVAFSPDGTFVASSSQ-----DGTIKLWDLRTGK-------------CVATLTGHTG 178 (289)
T ss_pred ECCCcE--EEEEec--cCCCcEEEEEEcCcCCEEEEEcC-----CCcEEEEEccccc-------------cceeEecCcc
Confidence 886432 122222 22334567899999888776542 2458888987532 111111111
Q ss_pred cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCC
Q 003878 360 DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN 439 (789)
Q Consensus 360 ~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~t 439 (789)
......|+++++.+++.+. +..|..+|+..++....+..+. ..+..+.+.+++.+++....++ .|++|++.+
T Consensus 179 ~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~--~i~i~~~~~ 250 (289)
T cd00200 179 EVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFSPDGYLLASGSEDG--TIRVWDLRT 250 (289)
T ss_pred ccceEEECCCcCEEEEecC----CCcEEEEECCCCceecchhhcC--CceEEEEEcCCCcEEEEEcCCC--cEEEEEcCC
Confidence 1122348888888877554 4678889987655222221232 3577888888666776666455 788999987
Q ss_pred CceeeecccCCeeEEEeecccCCcEEEE
Q 003878 440 GSLLHQLPIEIGSVNAISARREDSVVFI 467 (789)
Q Consensus 440 G~~~~~l~~~~~~v~~~s~s~d~~~l~~ 467 (789)
++....+......+..+.++++++.++.
T Consensus 251 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 251 GECVQTLSGHTNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred ceeEEEccccCCcEEEEEECCCCCEEEE
Confidence 7765666544556777888888775553
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-07 Score=108.18 Aligned_cols=233 Identities=18% Similarity=0.138 Sum_probs=147.4
Q ss_pred CCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCC-ceecccccccccccccCccceeeeeeccccccccccccc
Q 003878 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ-IVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLY 207 (789)
Q Consensus 129 ~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 207 (789)
++...+..+.|||||++|+ .|++..+|+|||++.+ ..+ ..+.+. . .
T Consensus 201 ~h~~~v~~~~fs~d~~~l~-----s~s~D~tiriwd~~~~~~~~-~~l~gH------~-~-------------------- 247 (456)
T KOG0266|consen 201 GHTRGVSDVAFSPDGSYLL-----SGSDDKTLRIWDLKDDGRNL-KTLKGH------S-T-------------------- 247 (456)
T ss_pred ccccceeeeEECCCCcEEE-----EecCCceEEEeeccCCCeEE-EEecCC------C-C--------------------
Confidence 4567789999999999887 5677889999999444 333 233332 0 0
Q ss_pred cccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC
Q 003878 208 LRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS 287 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~ 287 (789)
...+++|+|+|+.|+-...+ ..+++|++.++..
T Consensus 248 ----------------------------~v~~~~f~p~g~~i~Sgs~D-------------------~tvriWd~~~~~~ 280 (456)
T KOG0266|consen 248 ----------------------------YVTSVAFSPDGNLLVSGSDD-------------------GTVRIWDVRTGEC 280 (456)
T ss_pred ----------------------------ceEEEEecCCCCEEEEecCC-------------------CcEEEEeccCCeE
Confidence 24789999999555544332 3589999987432
Q ss_pred CcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc---eeE
Q 003878 288 EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA---QYE 364 (789)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~---~~~ 364 (789)
...+.. +...+..+++++||++|+..+. ...|.++|+.++.. .....+...... ...
T Consensus 281 --~~~l~~--hs~~is~~~f~~d~~~l~s~s~-----d~~i~vwd~~~~~~-----------~~~~~~~~~~~~~~~~~~ 340 (456)
T KOG0266|consen 281 --VRKLKG--HSDGISGLAFSPDGNLLVSASY-----DGTIRVWDLETGSK-----------LCLKLLSGAENSAPVTSV 340 (456)
T ss_pred --EEeeec--cCCceEEEEECCCCCEEEEcCC-----CccEEEEECCCCce-----------eeeecccCCCCCCceeEE
Confidence 223333 3344668899999999987643 35588999988520 001111111111 234
Q ss_pred EEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCC-ceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCcee
Q 003878 365 VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAER-DVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLL 443 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~-~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~ 443 (789)
.++|+|++++..+ .+..|..+++..+........+... .-+..+..+.++.++++...++ .|++|++.++..+
T Consensus 341 ~fsp~~~~ll~~~----~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~--~v~~~~~~s~~~~ 414 (456)
T KOG0266|consen 341 QFSPNGKYLLSAS----LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDG--SVYVWDSSSGGIL 414 (456)
T ss_pred EECCCCcEEEEec----CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCc--eEEEEeCCccchh
Confidence 4889999887643 3457888888876534445555432 1233333344467777788776 7999999887766
Q ss_pred eecccC-CeeEEEeecccCCcEEEE
Q 003878 444 HQLPIE-IGSVNAISARREDSVVFI 467 (789)
Q Consensus 444 ~~l~~~-~~~v~~~s~s~d~~~l~~ 467 (789)
..+... ...+..+++.+..+.+..
T Consensus 415 ~~l~~h~~~~~~~~~~~~~~~~~~s 439 (456)
T KOG0266|consen 415 QRLEGHSKAAVSDLSSHPTENLIAS 439 (456)
T ss_pred hhhcCCCCCceeccccCCCcCeeee
Confidence 666655 555556667776665443
|
|
| >COG0627 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.9e-09 Score=109.84 Aligned_cols=232 Identities=17% Similarity=0.137 Sum_probs=146.6
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeec--------------CCC-CCChhHHhcccccCCcchH
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIR--------------GGG-EYGEEWHKGGALAKKQNCF 599 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~R--------------G~g-~~g~~~~~~~~~~~~~~~~ 599 (789)
+.+.|++++.||--+......-........++.|.+++.+|.. |++ +|=.+|.+...... ...+
T Consensus 51 ~~~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~-~~q~ 129 (316)
T COG0627 51 GRDIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASG-PYQW 129 (316)
T ss_pred CCCCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccC-ccch
Confidence 4678888888886544311111112345566688888887432 322 22223433321111 2445
Q ss_pred HHHHHH-HHHHH-HcCCCCC--CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccccc-------CCccch
Q 003878 600 DDFISA-SEYLI-SAGYTQS--RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT-------IGHAWV 668 (789)
Q Consensus 600 ~D~~~~-~~~L~-~~~~~d~--~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~-------~~~~~~ 668 (789)
++++.. +-.++ +..-++. ++.+|.|+||||+-++.+|+.+||+|+.+.+.+|+++.......+ -+..+.
T Consensus 130 ~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~~~ 209 (316)
T COG0627 130 ETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKAFN 209 (316)
T ss_pred hHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCccHH
Confidence 666543 22223 3333454 389999999999999999999999999999999999987443222 111223
Q ss_pred hhcCCCCcHHHHHHHHhcCcccCCCCCCCC--C---CCCCCCCCeEEEEecCCCCCCC--cHHHHHHHHHHHHhhccCCC
Q 003878 669 SDFGCSEEEEEFYWLIKYSPLHNVRRPWEQ--N---PDKPFQYPSTLLLTADHDDRVV--PLHSLKLLATMQYVLCTSLE 741 (789)
Q Consensus 669 ~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~--~---~~~~~~~pp~Li~~g~~D~~V~--~~~~~~~~~~L~~~~~~~~~ 741 (789)
.-||...++. .+.++|..++++...+ . -... ..+++++-+|..|.... ...+.++.+++++.
T Consensus 210 ~~~G~~~~~~----w~~~D~~~~~~~l~~~~~~~~~~~~~-~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~------ 278 (316)
T COG0627 210 AMLGPDSDPA----WQENDPLSLIEKLVANANTRIWVYGG-SPPELLIDNGPADFFLAANNLSTRAFAEALRAA------ 278 (316)
T ss_pred HhcCCCcccc----ccccCchhHHHHhhhcccccceeccc-CCCccccccccchhhhhhcccCHHHHHHHHHhc------
Confidence 3466654432 3567777776641000 0 0000 25788999999998764 23478899999988
Q ss_pred CCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCC
Q 003878 742 NSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 742 ~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
|.+..++..+++.|.... ....++..+.|+...|+..
T Consensus 279 ----g~~~~~~~~~~G~Hsw~~----w~~~l~~~~~~~a~~l~~~ 315 (316)
T COG0627 279 ----GIPNGVRDQPGGDHSWYF----WASQLADHLPWLAGALGLA 315 (316)
T ss_pred ----CCCceeeeCCCCCcCHHH----HHHHHHHHHHHHHHHhccC
Confidence 999999988899997632 3567788999999988764
|
|
| >PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO | Back alignment and domain information |
|---|
Probab=98.93 E-value=3e-08 Score=97.37 Aligned_cols=182 Identities=15% Similarity=0.062 Sum_probs=106.5
Q ss_pred EEEEEcCCCCccCCCCCCHHHHHHHHcCCe--EEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 540 CLLYGYGGFNISVTPSFSVSRTILMRHLGA--VFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 540 ~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~--~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
.|||+||- .++..-.-.....+++++.|. .+..++.. ....+.++.++.++++. .+
T Consensus 1 ~ilYlHGF-~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~-------------------~~p~~a~~~l~~~i~~~--~~ 58 (187)
T PF05728_consen 1 MILYLHGF-NSSPQSFKAQALKQYFAEHGPDIQYPCPDLP-------------------PFPEEAIAQLEQLIEEL--KP 58 (187)
T ss_pred CeEEecCC-CCCCCCHHHHHHHHHHHHhCCCceEECCCCC-------------------cCHHHHHHHHHHHHHhC--CC
Confidence 37999994 332221111223455655553 34444432 22356677777777763 34
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCC--CcHHHHHHHHhcCcccCCCCC
Q 003878 618 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCS--EEEEEFYWLIKYSPLHNVRRP 695 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p--~~~~~~~~l~~~sP~~~v~~~ 695 (789)
+.++++|.|+||+.+.+++.+++ .++ |+.+|.+.+...+...+|..-...++.. -++.....++++.... +.
T Consensus 59 ~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~iG~~~~~~~~e~~~~~~~~~~~l~~l~~~~-~~-- 132 (187)
T PF05728_consen 59 ENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDYIGEQTNPYTGESYELTEEHIEELKALEVPY-PT-- 132 (187)
T ss_pred CCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHhhCccccCCCCccceechHhhhhcceEeccc-cC--
Confidence 45999999999999999988864 445 7778888876555433332111111211 1222233333322111 11
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHH
Q 003878 696 WEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADR 775 (789)
Q Consensus 696 ~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~ 775 (789)
..-+++++++..|..+++.++.+.++ .. ...+.+|++|.+.. ..+....+
T Consensus 133 ---------~~~~~lvll~~~DEvLd~~~a~~~~~---~~--------------~~~i~~ggdH~f~~----f~~~l~~i 182 (187)
T PF05728_consen 133 ---------NPERYLVLLQTGDEVLDYREAVAKYR---GC--------------AQIIEEGGDHSFQD----FEEYLPQI 182 (187)
T ss_pred ---------CCccEEEEEecCCcccCHHHHHHHhc---Cc--------------eEEEEeCCCCCCcc----HHHHHHHH
Confidence 23489999999999999976655442 21 23456899999975 23566778
Q ss_pred HHHH
Q 003878 776 YGFM 779 (789)
Q Consensus 776 ~~fl 779 (789)
.+|+
T Consensus 183 ~~f~ 186 (187)
T PF05728_consen 183 IAFL 186 (187)
T ss_pred HHhh
Confidence 8886
|
One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised. |
| >PLN03084 alpha/beta hydrolase fold protein; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.4e-08 Score=108.65 Aligned_cols=107 Identities=15% Similarity=0.006 Sum_probs=76.0
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
..|.||++||...... .|.. ....|. .+|.|+++|.||.|.....-. ......+++++...+..++++- .
T Consensus 126 ~~~~ivllHG~~~~~~--~w~~-~~~~L~-~~~~Via~DlpG~G~S~~p~~----~~~~~ys~~~~a~~l~~~i~~l--~ 195 (383)
T PLN03084 126 NNPPVLLIHGFPSQAY--SYRK-VLPVLS-KNYHAIAFDWLGFGFSDKPQP----GYGFNYTLDEYVSSLESLIDEL--K 195 (383)
T ss_pred CCCeEEEECCCCCCHH--HHHH-HHHHHh-cCCEEEEECCCCCCCCCCCcc----cccccCCHHHHHHHHHHHHHHh--C
Confidence 3588999999765432 3443 345666 689999999999875322100 0011345667766666666552 3
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
.+++.++|+|+||.++..++.++|++++++|+..|..
T Consensus 196 ~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~ 232 (383)
T PLN03084 196 SDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPL 232 (383)
T ss_pred CCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCC
Confidence 3589999999999999999999999999999988764
|
|
| >KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.6e-09 Score=100.41 Aligned_cols=188 Identities=13% Similarity=0.135 Sum_probs=127.2
Q ss_pred cEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCC--ChhHHhc---ccccCCcchHHHHHHHHHHHHHcC
Q 003878 539 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEY--GEEWHKG---GALAKKQNCFDDFISASEYLISAG 613 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~--g~~~~~~---~~~~~~~~~~~D~~~~~~~L~~~~ 613 (789)
-+||.+---||...... ...+.-++..||.|++||+=.|.-+ +.+|... .++...+..+.|+.+.++||..+|
T Consensus 40 ~~li~i~DvfG~~~~n~--r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~g 117 (242)
T KOG3043|consen 40 KVLIVIQDVFGFQFPNT--REGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNHG 117 (242)
T ss_pred eEEEEEEeeeccccHHH--HHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHcC
Confidence 46666655455433211 1123445558999999997554211 1111111 123555677899999999999776
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCC
Q 003878 614 YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVR 693 (789)
Q Consensus 614 ~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~ 693 (789)
++.+|+++|+.+||-.+..+....| +|.|+++..|.. .+.+. +.
T Consensus 118 --~~kkIGv~GfCwGak~vv~~~~~~~-~f~a~v~~hps~---------------------~d~~D------------~~ 161 (242)
T KOG3043|consen 118 --DSKKIGVVGFCWGAKVVVTLSAKDP-EFDAGVSFHPSF---------------------VDSAD------------IA 161 (242)
T ss_pred --CcceeeEEEEeecceEEEEeeccch-hheeeeEecCCc---------------------CChhH------------Hh
Confidence 4679999999999999888888866 788888766621 11111 11
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCC-------chh
Q 003878 694 RPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL-------PTQ 766 (789)
Q Consensus 694 ~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~-------~~~ 766 (789)
. ...|+|++.|+.|..+|+..-..+-++|+... ..-..+.+|++.+||+.. ++.
T Consensus 162 ~----------vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~~---------~~~~~v~~f~g~~HGf~~~r~~~~~Ped 222 (242)
T KOG3043|consen 162 N----------VKAPILFLFAELDEDVPPKDVKAWEEKLKENP---------AVGSQVKTFSGVGHGFVARRANISSPED 222 (242)
T ss_pred c----------CCCCEEEEeecccccCCHHHHHHHHHHHhcCc---------ccceeEEEcCCccchhhhhccCCCChhH
Confidence 1 25799999999999999999888888888751 112579999999999863 111
Q ss_pred --hHHHHHHHHHHHHHHHh
Q 003878 767 --KMIDEAADRYGFMAKML 783 (789)
Q Consensus 767 --~~~~~~~~~~~fl~~~l 783 (789)
...+.++++..||.+++
T Consensus 223 ~~~~eea~~~~~~Wf~~y~ 241 (242)
T KOG3043|consen 223 KKAAEEAYQRFISWFKHYL 241 (242)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 22345677899998876
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.4e-07 Score=89.65 Aligned_cols=242 Identities=12% Similarity=0.085 Sum_probs=146.4
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecc-cccccccccccCccceeeeeeccccccccccccccccc
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
++..++++||++.||-+ | +..|+++|+.++..-|. +++....+ ..+..+-.+|
T Consensus 42 qVNrLeiTpdk~~LAaa----~--~qhvRlyD~~S~np~Pv~t~e~h~kN-----------VtaVgF~~dg--------- 95 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLAAA----G--NQHVRLYDLNSNNPNPVATFEGHTKN-----------VTAVGFQCDG--------- 95 (311)
T ss_pred ceeeEEEcCCcchhhhc----c--CCeeEEEEccCCCCCceeEEeccCCc-----------eEEEEEeecC---------
Confidence 57788999999999943 3 57899999999965331 11111000 0011111333
Q ss_pred eeeEEEeeeccccceeeeeeec-----cc----ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEEC
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVS-----QF----KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFL 282 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~-----~~----~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 282 (789)
+..|.+.++|+-.||.+.. .+ .+..+...|.-..|+.. .....|++|++
T Consensus 96 ---rWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~-------------------dqsg~irvWDl 153 (311)
T KOG0315|consen 96 ---RWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISG-------------------DQSGNIRVWDL 153 (311)
T ss_pred ---eEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEee-------------------cCCCcEEEEEc
Confidence 5789999999999999865 11 23456666665555533 12335999999
Q ss_pred CCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec---cc
Q 003878 283 GTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID---GF 359 (789)
Q Consensus 283 g~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~---~~ 359 (789)
+...-...++- +....+.+++.-|||++|+...+. ...|++++-+.. . ..++.++.+ ..
T Consensus 154 ~~~~c~~~liP---e~~~~i~sl~v~~dgsml~a~nnk-----G~cyvW~l~~~~-~---------~s~l~P~~k~~ah~ 215 (311)
T KOG0315|consen 154 GENSCTHELIP---EDDTSIQSLTVMPDGSMLAAANNK-----GNCYVWRLLNHQ-T---------ASELEPVHKFQAHN 215 (311)
T ss_pred cCCccccccCC---CCCcceeeEEEcCCCcEEEEecCC-----ccEEEEEccCCC-c---------cccceEhhheeccc
Confidence 98765544542 233556789999999999865543 347888876632 1 112222221 11
Q ss_pred c-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC
Q 003878 360 D-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 360 ~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~ 438 (789)
. .--..+|||+++|+-.+. +-.++.++.++.-..+..+... ...+-+.+++.++..++....+. ..++|++.
T Consensus 216 ~~il~C~lSPd~k~lat~ss----dktv~iwn~~~~~kle~~l~gh-~rWvWdc~FS~dg~YlvTassd~--~~rlW~~~ 288 (311)
T KOG0315|consen 216 GHILRCLLSPDVKYLATCSS----DKTVKIWNTDDFFKLELVLTGH-QRWVWDCAFSADGEYLVTASSDH--TARLWDLS 288 (311)
T ss_pred ceEEEEEECCCCcEEEeecC----CceEEEEecCCceeeEEEeecC-CceEEeeeeccCccEEEecCCCC--ceeecccc
Confidence 1 112458999998874432 3456666666541123333322 24566777777677777777775 56778888
Q ss_pred CCceeeecc
Q 003878 439 NGSLLHQLP 447 (789)
Q Consensus 439 tG~~~~~l~ 447 (789)
.|+.+++-.
T Consensus 289 ~~k~v~qy~ 297 (311)
T KOG0315|consen 289 AGKEVRQYQ 297 (311)
T ss_pred cCceeeecC
Confidence 887655443
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.8e-06 Score=88.40 Aligned_cols=150 Identities=9% Similarity=0.091 Sum_probs=89.6
Q ss_pred EEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCC
Q 003878 304 SGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPK 383 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~ 383 (789)
+++.++||..+++... .+|-++.-.++ .....-++...-..++|+++.+++ ++.+
T Consensus 410 ~lav~~d~~~avv~~~------~~iv~l~~~~~---------------~~~~~~~y~~s~vAv~~~~~~vaV----GG~D 464 (603)
T KOG0318|consen 410 GLAVLSDGGTAVVACI------SDIVLLQDQTK---------------VSSIPIGYESSAVAVSPDGSEVAV----GGQD 464 (603)
T ss_pred eEEEcCCCCEEEEEec------CcEEEEecCCc---------------ceeeccccccceEEEcCCCCEEEE----eccc
Confidence 5667778777766553 33545442221 111112333334458899998876 3344
Q ss_pred ceEEEEECCCCC--CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce-eeecccCCeeEEEeeccc
Q 003878 384 YKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL-LHQLPIEIGSVNAISARR 460 (789)
Q Consensus 384 ~~L~~~dl~~~~--~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~-~~~l~~~~~~v~~~s~s~ 460 (789)
++|..+.+.+.+ .-..++++. ..+..++.+++...++.....+ .+.+||.++.+. ...-.++...|..++|+|
T Consensus 465 gkvhvysl~g~~l~ee~~~~~h~--a~iT~vaySpd~~yla~~Da~r--kvv~yd~~s~~~~~~~w~FHtakI~~~aWsP 540 (603)
T KOG0318|consen 465 GKVHVYSLSGDELKEEAKLLEHR--AAITDVAYSPDGAYLAAGDASR--KVVLYDVASREVKTNRWAFHTAKINCVAWSP 540 (603)
T ss_pred ceEEEEEecCCcccceeeeeccc--CCceEEEECCCCcEEEEeccCC--cEEEEEcccCceecceeeeeeeeEEEEEeCC
Confidence 566666666643 112333443 5688899999766666665554 788899986654 123344566778899999
Q ss_pred CCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 461 EDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 461 d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
++..+ ...|..+ .++.|+++.-
T Consensus 541 ~n~~v--ATGSlDt--~Viiysv~kP 562 (603)
T KOG0318|consen 541 NNKLV--ATGSLDT--NVIIYSVKKP 562 (603)
T ss_pred CceEE--Eeccccc--eEEEEEccCh
Confidence 88744 3445544 6777777654
|
|
| >KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.5e-08 Score=107.25 Aligned_cols=212 Identities=15% Similarity=0.093 Sum_probs=125.6
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
...|.||++|| |+. ....|......+....|+.|.++|.-|.|-.+ +.. ....-...+....++.+...-..
T Consensus 56 ~~~~pvlllHG-F~~-~~~~w~~~~~~L~~~~~~~v~aiDl~G~g~~s--~~~----~~~~y~~~~~v~~i~~~~~~~~~ 127 (326)
T KOG1454|consen 56 KDKPPVLLLHG-FGA-SSFSWRRVVPLLSKAKGLRVLAIDLPGHGYSS--PLP----RGPLYTLRELVELIRRFVKEVFV 127 (326)
T ss_pred CCCCcEEEecc-ccC-CcccHhhhccccccccceEEEEEecCCCCcCC--CCC----CCCceehhHHHHHHHHHHHhhcC
Confidence 46788999999 444 34455543333444347999999999855311 111 11123445666666655554333
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCCceeEEE---ecCCcccccccc-------------------c--ccCC-ccchhh
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPDLFGCAL---AHVGVMDMLRYH-------------------K--FTIG-HAWVSD 670 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v---~~~p~~d~~~~~-------------------~--~~~~-~~~~~e 670 (789)
+++.++|+|+||+++..+|..+|+..+.+| ...|........ + .... ..|...
T Consensus 128 --~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 205 (326)
T KOG1454|consen 128 --EPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSEG 205 (326)
T ss_pred --cceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeHh
Confidence 349999999999999999999999999998 444433221110 0 0000 001000
Q ss_pred --------cCCC-CcHHHHHHH------------------Hh-----cCcccCCCCCCCCCCCCCCCCCeEEEEecCCCC
Q 003878 671 --------FGCS-EEEEEFYWL------------------IK-----YSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDD 718 (789)
Q Consensus 671 --------~g~p-~~~~~~~~l------------------~~-----~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~ 718 (789)
+.++ ...+....+ .. ..+...++++ ...|+||++|+.|.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---------~~~pvlii~G~~D~ 276 (326)
T KOG1454|consen 206 LLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKI---------WKCPVLIIWGDKDQ 276 (326)
T ss_pred hhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccc---------cCCceEEEEcCcCC
Confidence 0111 000110000 00 1111233343 24899999999999
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHH
Q 003878 719 RVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 719 ~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 782 (789)
.+|.+.+..+.+.+. .+++++.+++||....... .+..+.+..|+.+.
T Consensus 277 ~~p~~~~~~~~~~~p--------------n~~~~~I~~~gH~~h~e~P--e~~~~~i~~Fi~~~ 324 (326)
T KOG1454|consen 277 IVPLELAEELKKKLP--------------NAELVEIPGAGHLPHLERP--EEVAALLRSFIARL 324 (326)
T ss_pred ccCHHHHHHHHhhCC--------------CceEEEeCCCCcccccCCH--HHHHHHHHHHHHHh
Confidence 999997777766552 2489999999998876444 36677888888765
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-07 Score=122.84 Aligned_cols=239 Identities=13% Similarity=0.068 Sum_probs=131.7
Q ss_pred EEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHH
Q 003878 522 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDD 601 (789)
Q Consensus 522 i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D 601 (789)
+..++.+...-. ....|.||++||..+... .|.. ....|. .+|.|+++|.||.|.....-...........++++
T Consensus 1356 ~~~~i~~~~~G~-~~~~~~vVllHG~~~s~~--~w~~-~~~~L~-~~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~ 1430 (1655)
T PLN02980 1356 FSCLIKVHEVGQ-NAEGSVVLFLHGFLGTGE--DWIP-IMKAIS-GSARCISIDLPGHGGSKIQNHAKETQTEPTLSVEL 1430 (1655)
T ss_pred eEEEEEEEecCC-CCCCCeEEEECCCCCCHH--HHHH-HHHHHh-CCCEEEEEcCCCCCCCCCccccccccccccCCHHH
Confidence 455555443211 224589999999876643 3443 344555 67999999999987653210000000112234666
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc--ccc-------------cCC-c
Q 003878 602 FISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY--HKF-------------TIG-H 665 (789)
Q Consensus 602 ~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~--~~~-------------~~~-~ 665 (789)
+.+.+..++++ ...+++.++|+|+||.+++.++.++|++++++|+..+...+... ... ..+ .
T Consensus 1431 ~a~~l~~ll~~--l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 1508 (1655)
T PLN02980 1431 VADLLYKLIEH--ITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLE 1508 (1655)
T ss_pred HHHHHHHHHHH--hCCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHH
Confidence 66666655554 24469999999999999999999999999999876543211100 000 000 0
Q ss_pred cchhhcCCC-------CcHHHHH----------------HHHhcCcc------cCCCCCCCCCCCCCCCCCeEEEEecCC
Q 003878 666 AWVSDFGCS-------EEEEEFY----------------WLIKYSPL------HNVRRPWEQNPDKPFQYPSTLLLTADH 716 (789)
Q Consensus 666 ~~~~e~g~p-------~~~~~~~----------------~l~~~sP~------~~v~~~~~~~~~~~~~~pp~Li~~g~~ 716 (789)
.+...|..+ ..+...+ .+..++.. ..+.++ ..|+|+++|++
T Consensus 1509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I----------~~PtLlI~Ge~ 1578 (1655)
T PLN02980 1509 IFLENWYSGELWKSLRNHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQC----------DTPLLLVVGEK 1578 (1655)
T ss_pred HHHHHhccHHHhhhhccCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhC----------CCCEEEEEECC
Confidence 000001000 0111000 11111100 112222 67999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHH
Q 003878 717 DDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 717 D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 782 (789)
|..++ ..+.++.+.+.+..+.. ......-+++.+++++||....... ......+.+||.+.
T Consensus 1579 D~~~~-~~a~~~~~~i~~a~~~~--~~~~~~~a~lvvI~~aGH~~~lE~P--e~f~~~I~~FL~~~ 1639 (1655)
T PLN02980 1579 DVKFK-QIAQKMYREIGKSKESG--NDKGKEIIEIVEIPNCGHAVHLENP--LPVIRALRKFLTRL 1639 (1655)
T ss_pred CCccH-HHHHHHHHHcccccccc--ccccccceEEEEECCCCCchHHHCH--HHHHHHHHHHHHhc
Confidence 98764 66677766664320000 0000112689999999998765433 35667788898764
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-06 Score=90.67 Aligned_cols=164 Identities=12% Similarity=0.019 Sum_probs=94.6
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.+++|+|||+.+++.... ...++.++..+...... + ..... ...+.|+|||++|++.
T Consensus 118 ~~~~~~~dg~~l~~~~~~------------------~~~~~~~d~~~~~~~~~-~-~~~~~---~~~~~~s~dg~~l~~~ 174 (300)
T TIGR03866 118 EGMAVSPDGKIVVNTSET------------------TNMAHFIDTKTYEIVDN-V-LVDQR---PRFAEFTADGKELWVS 174 (300)
T ss_pred ceEEECCCCCEEEEEecC------------------CCeEEEEeCCCCeEEEE-E-EcCCC---ccEEEECCCCCEEEEE
Confidence 678999999998876432 12344555544321111 1 11111 2357899999999876
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec--------cccceeEEEecCCCEEEEEECCCCCCceEEEE
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID--------GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRV 389 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~ 389 (789)
... ...++++|+++++. ...+.. .....-..+++||+.+++... ++.+|.++
T Consensus 175 ~~~----~~~v~i~d~~~~~~-------------~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~---~~~~i~v~ 234 (300)
T TIGR03866 175 SEI----GGTVSVIDVATRKV-------------IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG---PANRVAVV 234 (300)
T ss_pred cCC----CCEEEEEEcCccee-------------eeeeeecccccccccCCccceEECCCCCEEEEEcC---CCCeEEEE
Confidence 422 35689999987521 111100 000011237899998776443 23578999
Q ss_pred ECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEE-EeCCeEEEEEEECCCCceeeecccC
Q 003878 390 DLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSY-LSDVKYVLQIRDLKNGSLLHQLPIE 449 (789)
Q Consensus 390 dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~-~~~g~~~L~~~dl~tG~~~~~l~~~ 449 (789)
|+++++ ....+... ..+..+++++++..++.. ..++ .|.+||+++++.++.+..+
T Consensus 235 d~~~~~-~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~--~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 235 DAKTYE-VLDYLLVG--QRVWQLAFTPDEKYLLTTNGVSN--DVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred ECCCCc-EEEEEEeC--CCcceEEECCCCCEEEEEcCCCC--eEEEEECCCCcEEEEEEcc
Confidence 998765 22222222 345678888765444433 3343 7999999988876666543
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-07 Score=97.42 Aligned_cols=260 Identities=15% Similarity=0.132 Sum_probs=166.4
Q ss_pred cEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccc
Q 003878 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 131 ~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
+-.+....+|+|++.|| .|+=..+.+||...++..+. .+.+. .++.-+++-.|.. ++
T Consensus 175 ~rPis~~~fS~ds~~la-----T~swsG~~kvW~~~~~~~~~-~l~gH-------~~~v~~~~fhP~~--~~-------- 231 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLA-----TGSWSGLVKVWSVPQCNLLQ-TLRGH-------TSRVGAAVFHPVD--SD-------- 231 (459)
T ss_pred CCcceeeEeecCCCeEE-----EeecCCceeEeecCCcceeE-EEecc-------ccceeeEEEccCC--Cc--------
Confidence 34577888999999998 34444589999998885443 22221 1122222222221 11
Q ss_pred ceeeEEEeeeccccceeeeeeec-----cc-----ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEE
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVS-----QF-----KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYH 280 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~-----~~-----~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (789)
.-+.++..+|+..||.+.- ++ ++..++|.|+|+.|.-..++. .-.+|
T Consensus 232 ----~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~-------------------tWRlW 288 (459)
T KOG0272|consen 232 ----LNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDS-------------------TWRLW 288 (459)
T ss_pred ----cceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeeccccc-------------------chhhc
Confidence 3477888999999999876 22 247799999999998766553 24567
Q ss_pred ECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc
Q 003878 281 FLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD 360 (789)
Q Consensus 281 ~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 360 (789)
++.++.+ ++..+ .+...+.+++|-+||.-++-...+ +--.++|+.+|. ...-+.....
T Consensus 289 D~~tk~E---lL~QE-GHs~~v~~iaf~~DGSL~~tGGlD-----~~~RvWDlRtgr-------------~im~L~gH~k 346 (459)
T KOG0272|consen 289 DLETKSE---LLLQE-GHSKGVFSIAFQPDGSLAATGGLD-----SLGRVWDLRTGR-------------CIMFLAGHIK 346 (459)
T ss_pred ccccchh---hHhhc-ccccccceeEecCCCceeeccCcc-----chhheeecccCc-------------EEEEeccccc
Confidence 8877532 33333 234556789999999877643322 223456888852 1222333333
Q ss_pred ceeE-EEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECC
Q 003878 361 AQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 361 ~~~~-~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~ 438 (789)
..+. .|+|+|-+++- ++.+...-++|+......-.+..|. ..+..|-+.+ .+.++++..-|. .+.+|...
T Consensus 347 ~I~~V~fsPNGy~lAT----gs~Dnt~kVWDLR~r~~ly~ipAH~--nlVS~Vk~~p~~g~fL~TasyD~--t~kiWs~~ 418 (459)
T KOG0272|consen 347 EILSVAFSPNGYHLAT----GSSDNTCKVWDLRMRSELYTIPAHS--NLVSQVKYSPQEGYFLVTASYDN--TVKIWSTR 418 (459)
T ss_pred ceeeEeECCCceEEee----cCCCCcEEEeeecccccceeccccc--chhhheEecccCCeEEEEcccCc--ceeeecCC
Confidence 3443 39999987762 2344567778887655333333344 4567787776 477888887776 57778887
Q ss_pred CCceeeecccCCeeEEEeecccCCcEEE
Q 003878 439 NGSLLHQLPIEIGSVNAISARREDSVVF 466 (789)
Q Consensus 439 tG~~~~~l~~~~~~v~~~s~s~d~~~l~ 466 (789)
++...+.|..+.+.|.++..++|+..+.
T Consensus 419 ~~~~~ksLaGHe~kV~s~Dis~d~~~i~ 446 (459)
T KOG0272|consen 419 TWSPLKSLAGHEGKVISLDISPDSQAIA 446 (459)
T ss_pred CcccchhhcCCccceEEEEeccCCceEE
Confidence 7887788887788888888899887544
|
|
| >PRK06765 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=104.92 Aligned_cols=114 Identities=12% Similarity=0.027 Sum_probs=74.5
Q ss_pred CCccEEEEEcCCCCccCC----------CCCCHHH---HHHHHcCCeEEEEEeecCCCC--------CChhHHhcccc--
Q 003878 536 GSHPCLLYGYGGFNISVT----------PSFSVSR---TILMRHLGAVFCIANIRGGGE--------YGEEWHKGGAL-- 592 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~----------~~~~~~~---~~~l~~~G~~v~~~~~RG~g~--------~g~~~~~~~~~-- 592 (789)
.+.++||+.|+-.+.+.. ++|-... ...++-.-|-|+++|+=|++. .|+.-...+.+
T Consensus 54 ~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~ 133 (389)
T PRK06765 54 AKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNVITTGPASINPKTGKP 133 (389)
T ss_pred CCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCc
Confidence 456899999996553311 1221110 123344568999999998752 22221111111
Q ss_pred ---cCCcchHHHHHHHHHHHHHcCCCCCCcEE-EEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 593 ---AKKQNCFDDFISASEYLISAGYTQSRKLC-IEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 593 ---~~~~~~~~D~~~~~~~L~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
.....++.|+.+++..|++.- .-+++. ++|+|+||.+++..+.++|++++.+|+.+.
T Consensus 134 ~~~~fP~~t~~d~~~~~~~ll~~l--gi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~ 194 (389)
T PRK06765 134 YGMDFPVVTILDFVRVQKELIKSL--GIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIG 194 (389)
T ss_pred cCCCCCcCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEec
Confidence 223467899988888888652 235775 999999999999999999999999887743
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.3e-06 Score=88.67 Aligned_cols=142 Identities=9% Similarity=0.122 Sum_probs=95.0
Q ss_pred EEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeE-EEecCCCEEEEEECCCCC
Q 003878 304 SGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDAP 382 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dG~~l~~~tn~~~~ 382 (789)
-..++-|++.+++...++ ..+-++|..+++ ......+...... ..++||+.+++ +| .
T Consensus 364 Y~r~~~~~e~~vigt~dg----D~l~iyd~~~~e--------------~kr~e~~lg~I~av~vs~dGK~~vv-aN---d 421 (668)
T COG4946 364 YRRIQVDPEGDVIGTNDG----DKLGIYDKDGGE--------------VKRIEKDLGNIEAVKVSPDGKKVVV-AN---D 421 (668)
T ss_pred EEEEccCCcceEEeccCC----ceEEEEecCCce--------------EEEeeCCccceEEEEEcCCCcEEEE-Ec---C
Confidence 345666777777666543 236667777753 1222223332222 37899987764 33 3
Q ss_pred CceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCe--EEEEEEECCCCceeeecccCCeeEEEeeccc
Q 003878 383 KYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVK--YVLQIRDLKNGSLLHQLPIEIGSVNAISARR 460 (789)
Q Consensus 383 ~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~--~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~ 460 (789)
+++|+++|++++. ..++..++...|.++.|+++.+.++..-..|. ..|.++|.++|+. -.++.|.+.-.+.++++
T Consensus 422 r~el~vididngn--v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki-y~vTT~ta~DfsPaFD~ 498 (668)
T COG4946 422 RFELWVIDIDNGN--VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI-YDVTTPTAYDFSPAFDP 498 (668)
T ss_pred ceEEEEEEecCCC--eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE-EEecCCcccccCcccCC
Confidence 6899999999997 55666666788999999997666666666663 4789999997776 56666633323578899
Q ss_pred CCcEEEEEEc
Q 003878 461 EDSVVFISFT 470 (789)
Q Consensus 461 d~~~l~~~~s 470 (789)
|++.++|...
T Consensus 499 d~ryLYfLs~ 508 (668)
T COG4946 499 DGRYLYFLSA 508 (668)
T ss_pred CCcEEEEEec
Confidence 9998887544
|
|
| >COG2936 Predicted acyl esterases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.6e-08 Score=109.94 Aligned_cols=143 Identities=19% Similarity=0.212 Sum_probs=108.0
Q ss_pred CcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCC--HHHHH---HHHcCCeEEEEEeecCCC
Q 003878 506 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFS--VSRTI---LMRHLGAVFCIANIRGGG 580 (789)
Q Consensus 506 ~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~--~~~~~---~l~~~G~~v~~~~~RG~g 580 (789)
+..+.+.++.+|| ++|..-||+|++. ++.|+++...=.+-......+. ..... +++.+||+|+..|.||.+
T Consensus 17 ~~~~~v~V~MRDG-vrL~~dIy~Pa~~---g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~ 92 (563)
T COG2936 17 YIERDVMVPMRDG-VRLAADIYRPAGA---GPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRG 92 (563)
T ss_pred eeeeeeeEEecCC-eEEEEEEEccCCC---CCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccc
Confidence 5667789999999 9999999999974 8899999887322111111111 11111 344499999999999987
Q ss_pred CCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc
Q 003878 581 EYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY 658 (789)
Q Consensus 581 ~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~ 658 (789)
+....|-.- .. ...+|-.++|+||.++.+.+ .+|+.+|.|++|+...++|+..|--.||++...+..|+.+.
T Consensus 93 ~SeG~~~~~----~~-~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~y~d 164 (563)
T COG2936 93 GSEGVFDPE----SS-REAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDRYRD 164 (563)
T ss_pred cCCccccee----cc-ccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeecccccccccccc
Confidence 654443221 11 36689999999999999977 78999999999999999998888888999999999887543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.5e-05 Score=85.77 Aligned_cols=113 Identities=12% Similarity=0.195 Sum_probs=69.8
Q ss_pred Eec-CCCEEEEEECCCCCCceEEEEECCCCC-----CeEEeccCCC-----CceeeeEEEecC-CEEEEEEEe-------
Q 003878 366 IAN-DDTVFTFLTNKDAPKYKIIRVDLKEPN-----DWFEVIPEAE-----RDVLESATAVNL-NQMIVSYLS------- 426 (789)
Q Consensus 366 ~s~-dG~~l~~~tn~~~~~~~L~~~dl~~~~-----~~~~l~~~~~-----~~~i~~v~~~~~-~~lv~~~~~------- 426 (789)
+++ ||+. +|.+++ +.|+.+|+.+.+ .|..+..... ..-.+.++++++ +++|+....
T Consensus 201 ~~~~dg~~-~~vs~e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk 275 (352)
T TIGR02658 201 YSNKSGRL-VWPTYT----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHK 275 (352)
T ss_pred eEcCCCcE-EEEecC----CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcccccc
Confidence 355 6654 555654 689999975532 2333221110 112344778864 566664421
Q ss_pred CCeEEEEEEECCCCceeeecccCCeeEEEeecccCCc-EEEEEEcCCCCCcEEEEEECCCCC
Q 003878 427 DVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDS-VVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 427 ~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~-~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
++-.+|+++|.++++.+..+..... +.++.+++|++ .++. .+. ....+..+|..+++
T Consensus 276 ~~~~~V~ViD~~t~kvi~~i~vG~~-~~~iavS~Dgkp~lyv-tn~--~s~~VsViD~~t~k 333 (352)
T TIGR02658 276 TASRFLFVVDAKTGKRLRKIELGHE-IDSINVSQDAKPLLYA-LST--GDKTLYIFDAETGK 333 (352)
T ss_pred CCCCEEEEEECCCCeEEEEEeCCCc-eeeEEECCCCCeEEEE-eCC--CCCcEEEEECcCCe
Confidence 2225899999999988777776543 44678999999 5554 332 35678999998885
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-07 Score=97.33 Aligned_cols=129 Identities=16% Similarity=0.182 Sum_probs=79.0
Q ss_pred CcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChh
Q 003878 506 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 585 (789)
Q Consensus 506 ~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~ 585 (789)
+..+.+.+. ++ .++-..-+.+.. ...+-+|++|| ||..... |...+ .-|+ ....|.++|..|.|...+.
T Consensus 65 ~~~~~v~i~--~~-~~iw~~~~~~~~----~~~~plVliHG-yGAg~g~-f~~Nf-~~La-~~~~vyaiDllG~G~SSRP 133 (365)
T KOG4409|consen 65 YSKKYVRIP--NG-IEIWTITVSNES----ANKTPLVLIHG-YGAGLGL-FFRNF-DDLA-KIRNVYAIDLLGFGRSSRP 133 (365)
T ss_pred cceeeeecC--CC-ceeEEEeecccc----cCCCcEEEEec-cchhHHH-HHHhh-hhhh-hcCceEEecccCCCCCCCC
Confidence 444445444 44 444333333322 33455667777 3433222 22222 3344 4889999999997754332
Q ss_pred -HHhcccccCCcchHHHHHHHHH-HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 586 -WHKGGALAKKQNCFDDFISASE-YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 586 -~~~~~~~~~~~~~~~D~~~~~~-~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
|. ......-.-+++.++ |-++.+. +++.++|||+||+|+..+|.++|++++-.|+..|.-
T Consensus 134 ~F~-----~d~~~~e~~fvesiE~WR~~~~L---~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~G 195 (365)
T KOG4409|consen 134 KFS-----IDPTTAEKEFVESIEQWRKKMGL---EKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWG 195 (365)
T ss_pred CCC-----CCcccchHHHHHHHHHHHHHcCC---cceeEeeccchHHHHHHHHHhChHhhceEEEecccc
Confidence 11 112222335666666 4455555 489999999999999999999999999999887743
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-07 Score=110.75 Aligned_cols=106 Identities=12% Similarity=0.131 Sum_probs=67.5
Q ss_pred ecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccccc
Q 003878 514 PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 593 (789)
Q Consensus 514 ~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~ 593 (789)
...|| .+|.+..+- +...|.||++||..+... .|.. +...|. +||.|+++|+||.|..... ..
T Consensus 8 ~~~~g-~~l~~~~~g------~~~~~~ivllHG~~~~~~--~w~~-~~~~L~-~~~~Vi~~D~~G~G~S~~~------~~ 70 (582)
T PRK05855 8 VSSDG-VRLAVYEWG------DPDRPTVVLVHGYPDNHE--VWDG-VAPLLA-DRFRVVAYDVRGAGRSSAP------KR 70 (582)
T ss_pred EeeCC-EEEEEEEcC------CCCCCeEEEEcCCCchHH--HHHH-HHHHhh-cceEEEEecCCCCCCCCCC------Cc
Confidence 34588 888765432 123689999999865532 3443 345565 8999999999998754321 11
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCC-cEEEEeeChHHHHHHHHHHh
Q 003878 594 KKQNCFDDFISASEYLISAGYTQSR-KLCIEGGSNGGLLVGACINQ 638 (789)
Q Consensus 594 ~~~~~~~D~~~~~~~L~~~~~~d~~-~i~i~G~S~GG~l~~~~~~~ 638 (789)
....+++++.+-+..+++. .... .+.++|||+||.++..++.+
T Consensus 71 ~~~~~~~~~a~dl~~~i~~--l~~~~~~~lvGhS~Gg~~a~~~a~~ 114 (582)
T PRK05855 71 TAAYTLARLADDFAAVIDA--VSPDRPVHLLAHDWGSIQGWEAVTR 114 (582)
T ss_pred ccccCHHHHHHHHHHHHHH--hCCCCcEEEEecChHHHHHHHHHhC
Confidence 1123455555555555543 1223 49999999999888777655
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.4e-06 Score=97.08 Aligned_cols=214 Identities=14% Similarity=0.047 Sum_probs=120.4
Q ss_pred CcEEEEeEEeCC-CCcEEEEEEecCCceEEEEEEEEcCCCceecc---cccccccccccCccceeeeeeccccccccccc
Q 003878 130 GTAALIKVSVSE-DAKYLAYALSYSGSDWATIKLMRIEDQIVEAD---ALSWVCFCFSHSFGYFFHLTISLLNVPTYKLF 205 (789)
Q Consensus 130 ~~~~~~~~~~Sp-Dg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 205 (789)
+...+..+.||| |+++||- |++..+|++||+.++..... .+... ..| .
T Consensus 74 H~~~V~~v~fsP~d~~~LaS-----gS~DgtIkIWdi~~~~~~~~~~~~l~~L----~gH---------------~---- 125 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFT-----ASEDGTIMGWGIPEEGLTQNISDPIVHL----QGH---------------T---- 125 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEE-----EeCCCEEEEEecCCCccccccCcceEEe----cCC---------------C----
Confidence 445688999999 8888873 34456899999987632110 00000 000 0
Q ss_pred cccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCC
Q 003878 206 LYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTK 285 (789)
Q Consensus 206 ~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~ 285 (789)
-....++|+|++..++++.. ....|.+|++.+.
T Consensus 126 -----------------------------~~V~~l~f~P~~~~iLaSgs------------------~DgtVrIWDl~tg 158 (493)
T PTZ00421 126 -----------------------------KKVGIVSFHPSAMNVLASAG------------------ADMVVNVWDVERG 158 (493)
T ss_pred -----------------------------CcEEEEEeCcCCCCEEEEEe------------------CCCEEEEEECCCC
Confidence 02578999999765555422 2346889999765
Q ss_pred CCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc--cee
Q 003878 286 QSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD--AQY 363 (789)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~--~~~ 363 (789)
. ....+. .+...+.++.|+|||+.|+..+. ...|.++|+.++. ....+..... ...
T Consensus 159 ~--~~~~l~--~h~~~V~sla~spdG~lLatgs~-----Dg~IrIwD~rsg~-------------~v~tl~~H~~~~~~~ 216 (493)
T PTZ00421 159 K--AVEVIK--CHSDQITSLEWNLDGSLLCTTSK-----DKKLNIIDPRDGT-------------IVSSVEAHASAKSQR 216 (493)
T ss_pred e--EEEEEc--CCCCceEEEEEECCCCEEEEecC-----CCEEEEEECCCCc-------------EEEEEecCCCCcceE
Confidence 3 222333 23344678999999998876543 3458899988742 1222221111 112
Q ss_pred EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEE-EeCCeEEEEEEECCCCce
Q 003878 364 EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSY-LSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 364 ~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~-~~~g~~~L~~~dl~tG~~ 442 (789)
..|.+++..++........+..|..+|+.................+....++++..+++.. ..++ .|++|++.+++.
T Consensus 217 ~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg--~Iriwdl~~~~~ 294 (493)
T PTZ00421 217 CLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG--NIRCFELMNERL 294 (493)
T ss_pred EEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC--eEEEEEeeCCce
Confidence 4577877766544322234568999998765411112111111222233445544444444 3354 788999886654
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-05 Score=78.86 Aligned_cols=197 Identities=12% Similarity=0.049 Sum_probs=127.8
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...++-|+||...+ + ......+++|++.+++.. ..|.... ..+.++++|+|.++|+-
T Consensus 66 v~dv~~s~dg~~al-S------------------~swD~~lrlWDl~~g~~t--~~f~GH~--~dVlsva~s~dn~qivS 122 (315)
T KOG0279|consen 66 VSDVVLSSDGNFAL-S------------------ASWDGTLRLWDLATGEST--RRFVGHT--KDVLSVAFSTDNRQIVS 122 (315)
T ss_pred ecceEEccCCceEE-e------------------ccccceEEEEEecCCcEE--EEEEecC--CceEEEEecCCCceeec
Confidence 47888999997665 3 234456999999987443 3444432 34678999999999975
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc--ccc-eeEEEecCCCEEEEEECCCCCCceEEEEECCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG--FDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE 393 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~--~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~ 393 (789)
.+. ...|-+++.-+. +...+..+ .+- ....|+|+....++++.. .+..|-++|+.+
T Consensus 123 GSr-----DkTiklwnt~g~--------------ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s--~DktvKvWnl~~ 181 (315)
T KOG0279|consen 123 GSR-----DKTIKLWNTLGV--------------CKYTIHEDSHREWVSCVRFSPNESNPIIVSAS--WDKTVKVWNLRN 181 (315)
T ss_pred CCC-----cceeeeeeeccc--------------EEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc--CCceEEEEccCC
Confidence 442 344777776652 11122222 111 123489986566665543 345688899988
Q ss_pred CCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCC
Q 003878 394 PNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFL 473 (789)
Q Consensus 394 ~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~ 473 (789)
.+-....+.+. .++..+++++|+.+.++...+| ++++||++.|+.+..+.. ...|.++.++|+.-.+...
T Consensus 182 ~~l~~~~~gh~--~~v~t~~vSpDGslcasGgkdg--~~~LwdL~~~k~lysl~a-~~~v~sl~fspnrywL~~a----- 251 (315)
T KOG0279|consen 182 CQLRTTFIGHS--GYVNTVTVSPDGSLCASGGKDG--EAMLWDLNEGKNLYSLEA-FDIVNSLCFSPNRYWLCAA----- 251 (315)
T ss_pred cchhhcccccc--ccEEEEEECCCCCEEecCCCCc--eEEEEEccCCceeEeccC-CCeEeeEEecCCceeEeec-----
Confidence 76222333333 6788999999889999887776 889999998876554432 4457778888865444432
Q ss_pred CCcEEEEEECCCCC
Q 003878 474 IPGIVYQCNLKTET 487 (789)
Q Consensus 474 ~P~~ly~~dl~tg~ 487 (789)
+...|-.+|++++.
T Consensus 252 t~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 252 TATSIKIWDLESKA 265 (315)
T ss_pred cCCceEEEeccchh
Confidence 33358889998875
|
|
| >PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.2e-07 Score=101.90 Aligned_cols=127 Identities=16% Similarity=0.150 Sum_probs=66.2
Q ss_pred eEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCC------ChhHHhcc---
Q 003878 520 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEY------GEEWHKGG--- 590 (789)
Q Consensus 520 ~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~------g~~~~~~~--- 590 (789)
.++|+..-.| ....++.|+||+.||-.+... .|+..+..+.. +||+|++++.|-+... ...-....
T Consensus 84 ~~~pa~~~a~--~~~~~~~PvvIFSHGlgg~R~--~yS~~~~eLAS-~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~ 158 (379)
T PF03403_consen 84 IRIPAYWNAP--LSPPGKFPVVIFSHGLGGSRT--SYSAICGELAS-HGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYV 158 (379)
T ss_dssp -EESSEET----B--SS-EEEEEEE--TT--TT--TTHHHHHHHHH-TT-EEEEE---SS-SSEEEE-SSHHHHHHT---
T ss_pred cccccccCcc--cccCCCCCEEEEeCCCCcchh--hHHHHHHHHHh-CCeEEEEeccCCCceeEEEeccCCCcccccccc
Confidence 5555532222 223378999999999877643 45655555555 9999999999965321 11100000
Q ss_pred ----c------ccC-Ccch-----------HHHHHHHHHHHHH--c------------------CCCCCCcEEEEeeChH
Q 003878 591 ----A------LAK-KQNC-----------FDDFISASEYLIS--A------------------GYTQSRKLCIEGGSNG 628 (789)
Q Consensus 591 ----~------~~~-~~~~-----------~~D~~~~~~~L~~--~------------------~~~d~~~i~i~G~S~G 628 (789)
. ... .... ..|+..+++.|.+ . +-+|.++|+++|||+|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFG 238 (379)
T PF03403_consen 159 VEYLEEEWIPLRDFDPEEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFG 238 (379)
T ss_dssp ------EEEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHH
T ss_pred ccccccceeccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCch
Confidence 0 000 0111 2466667776653 1 3357889999999999
Q ss_pred HHHHHHHHHhCCCceeEEEecCCc
Q 003878 629 GLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 629 G~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
|..++.++.+. .+|+|+|+.-|.
T Consensus 239 GATa~~~l~~d-~r~~~~I~LD~W 261 (379)
T PF03403_consen 239 GATALQALRQD-TRFKAGILLDPW 261 (379)
T ss_dssp HHHHHHHHHH--TT--EEEEES--
T ss_pred HHHHHHHHhhc-cCcceEEEeCCc
Confidence 99999988885 689999976663
|
|
| >PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.2e-08 Score=98.78 Aligned_cols=78 Identities=21% Similarity=0.108 Sum_probs=62.8
Q ss_pred eEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEe
Q 003878 569 AVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA 648 (789)
Q Consensus 569 ~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~ 648 (789)
|.|+++|.||.|...+. ..........+|+.+.++.+++.--. +++.++|+|+||.+++.++.++|++++++|+
T Consensus 1 f~vi~~d~rG~g~S~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPH----WDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSC----CGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCC----ccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 67999999998864321 11334456689999999999886333 4599999999999999999999999999999
Q ss_pred cCCc
Q 003878 649 HVGV 652 (789)
Q Consensus 649 ~~p~ 652 (789)
..++
T Consensus 75 ~~~~ 78 (230)
T PF00561_consen 75 ISPP 78 (230)
T ss_dssp ESES
T ss_pred Eeee
Confidence 9885
|
; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A .... |
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.4e-05 Score=78.70 Aligned_cols=244 Identities=11% Similarity=0.091 Sum_probs=146.2
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCcee---cccccccccccccCccceeeeeecccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE---ADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFL 206 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 206 (789)
+...|..+.||+|.++|+= ++....+-|||.-|...+ +..-.|
T Consensus 54 H~~Ki~~~~ws~Dsr~ivS-----aSqDGklIvWDs~TtnK~haipl~s~W----------------------------- 99 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVS-----ASQDGKLIVWDSFTTNKVHAIPLPSSW----------------------------- 99 (343)
T ss_pred cccceeeeEecCCcCeEEe-----eccCCeEEEEEcccccceeEEecCcee-----------------------------
Confidence 3345778899999999973 333447999999887433 222223
Q ss_pred ccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCC
Q 003878 207 YLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ 286 (789)
Q Consensus 207 ~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~ 286 (789)
+..-++||.|+.++-...+ ....|| .+.+..
T Consensus 100 ------------------------------VMtCA~sPSg~~VAcGGLd-----------------N~Csiy--~ls~~d 130 (343)
T KOG0286|consen 100 ------------------------------VMTCAYSPSGNFVACGGLD-----------------NKCSIY--PLSTRD 130 (343)
T ss_pred ------------------------------EEEEEECCCCCeEEecCcC-----------------ceeEEE--eccccc
Confidence 3678999999988854322 122344 443332
Q ss_pred CC--cEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-
Q 003878 287 SE--DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY- 363 (789)
Q Consensus 287 ~~--~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~- 363 (789)
.+ ....-+.+.+..|+....+.+|+..|- .+ + ....-++|++++. .............
T Consensus 131 ~~g~~~v~r~l~gHtgylScC~f~dD~~ilT-~S--G---D~TCalWDie~g~-------------~~~~f~GH~gDV~s 191 (343)
T KOG0286|consen 131 AEGNVRVSRELAGHTGYLSCCRFLDDNHILT-GS--G---DMTCALWDIETGQ-------------QTQVFHGHTGDVMS 191 (343)
T ss_pred ccccceeeeeecCccceeEEEEEcCCCceEe-cC--C---CceEEEEEcccce-------------EEEEecCCcccEEE
Confidence 11 122223345667776777877776442 21 2 3557788999852 1112222111112
Q ss_pred EEEec-CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce
Q 003878 364 EVIAN-DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 364 ~~~s~-dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
..++| +++.|+ + ++-+..-+++|+..+. ...-++.. +..|.++.++|++.-+++.++|+. .+++|+...+.
T Consensus 192 lsl~p~~~ntFv--S--g~cD~~aklWD~R~~~-c~qtF~gh-esDINsv~ffP~G~afatGSDD~t--cRlyDlRaD~~ 263 (343)
T KOG0286|consen 192 LSLSPSDGNTFV--S--GGCDKSAKLWDVRSGQ-CVQTFEGH-ESDINSVRFFPSGDAFATGSDDAT--CRLYDLRADQE 263 (343)
T ss_pred EecCCCCCCeEE--e--cccccceeeeeccCcc-eeEeeccc-ccccceEEEccCCCeeeecCCCce--eEEEeecCCcE
Confidence 22677 777655 2 2334567778988875 33334433 356889999998788888999984 45567765554
Q ss_pred eeecccC--CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 443 LHQLPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 443 ~~~l~~~--~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+.....+ ...+.++.+|..|+.++..|..+ +...||.-.++
T Consensus 264 ~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~----~c~vWDtlk~e 306 (343)
T KOG0286|consen 264 LAVYSHDSIICGITSVAFSKSGRLLFAGYDDF----TCNVWDTLKGE 306 (343)
T ss_pred EeeeccCcccCCceeEEEcccccEEEeeecCC----ceeEeeccccc
Confidence 3333322 45567788888888776656655 67788865554
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-05 Score=90.78 Aligned_cols=246 Identities=17% Similarity=0.112 Sum_probs=147.4
Q ss_pred cEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCce-ecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV-EADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 131 ~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
...+..+.+||||++++.+.. ...+++|++.++.. +...+... ..
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~-----~~~i~~~~~~~~~~~~~~~l~~h------~~----------------------- 204 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASS-----DGLIRIWKLEGIKSNLLRELSGH------TR----------------------- 204 (456)
T ss_pred cCceEEEEEcCCCCeEEEccC-----CCcEEEeecccccchhhcccccc------cc-----------------------
Confidence 345667889999999886543 34788888866651 11122111 11
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
....++|||||+.|+=. ....++++|++-. ...-
T Consensus 205 --------------------------~v~~~~fs~d~~~l~s~-------------------s~D~tiriwd~~~-~~~~ 238 (456)
T KOG0266|consen 205 --------------------------GVSDVAFSPDGSYLLSG-------------------SDDKTLRIWDLKD-DGRN 238 (456)
T ss_pred --------------------------ceeeeEECCCCcEEEEe-------------------cCCceEEEeeccC-CCeE
Confidence 25889999999966533 2335689999832 2222
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce-eEEEec
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEVIAN 368 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~ 368 (789)
..++. .+..++..+.|+|+|+.++..+. ...|.++|+.+++ +...+....+.. ...+++
T Consensus 239 ~~~l~--gH~~~v~~~~f~p~g~~i~Sgs~-----D~tvriWd~~~~~-------------~~~~l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 239 LKTLK--GHSTYVTSVAFSPDGNLLVSGSD-----DGTVRIWDVRTGE-------------CVRKLKGHSDGISGLAFSP 298 (456)
T ss_pred EEEec--CCCCceEEEEecCCCCEEEEecC-----CCcEEEEeccCCe-------------EEEeeeccCCceEEEEECC
Confidence 33333 45566789999999965554443 3458889998742 223333322222 234788
Q ss_pred CCCEEEEEECCCCCCceEEEEECCCCCC--eEEeccCCCCc-eeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeee
Q 003878 369 DDTVFTFLTNKDAPKYKIIRVDLKEPND--WFEVIPEAERD-VLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQ 445 (789)
Q Consensus 369 dG~~l~~~tn~~~~~~~L~~~dl~~~~~--~~~l~~~~~~~-~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~ 445 (789)
||..|+.. ..++.|..+|+.++.. ...+.... .. .+..+.+++++..++....++ .+.+|++..+.....
T Consensus 299 d~~~l~s~----s~d~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~fsp~~~~ll~~~~d~--~~~~w~l~~~~~~~~ 371 (456)
T KOG0266|consen 299 DGNLLVSA----SYDGTIRVWDLETGSKLCLKLLSGAE-NSAPVTSVQFSPNGKYLLSASLDR--TLKLWDLRSGKSVGT 371 (456)
T ss_pred CCCEEEEc----CCCccEEEEECCCCceeeeecccCCC-CCCceeEEEECCCCcEEEEecCCC--eEEEEEccCCcceee
Confidence 88876643 2357899999988761 12333222 23 567788888655555565554 788999987766555
Q ss_pred cccCCe---eEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 446 LPIEIG---SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 446 l~~~~~---~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
...... .+.....+..+..++. -.....++.+|+.++.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~s----g~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYS----GSEDGSVYVWDSSSGG 412 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEE----EeCCceEEEEeCCccc
Confidence 544322 2323333455554442 2345688999988763
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.1e-06 Score=84.37 Aligned_cols=102 Identities=13% Similarity=0.089 Sum_probs=64.3
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...++|+|+|+.|+++... .+.++.++++. .+ .+...+.. ....+.|||+|++|++
T Consensus 62 I~~~~WsP~g~~favi~g~-----------------~~~~v~lyd~~---~~--~i~~~~~~--~~n~i~wsP~G~~l~~ 117 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGS-----------------MPAKVTLYDVK---GK--KIFSFGTQ--PRNTISWSPDGRFLVL 117 (194)
T ss_pred eEEEEECcCCCEEEEEEcc-----------------CCcccEEEcCc---cc--EeEeecCC--CceEEEECCCCCEEEE
Confidence 5789999999999887532 22356677764 22 22222222 2346899999999998
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEEC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTN 378 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn 378 (789)
...... ..++.++|+.+.+ .+ ............|||||++|+..+.
T Consensus 118 ~g~~n~--~G~l~~wd~~~~~-------------~i-~~~~~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 118 AGFGNL--NGDLEFWDVRKKK-------------KI-STFEHSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred EEccCC--CcEEEEEECCCCE-------------Ee-eccccCcEEEEEEcCCCCEEEEEEe
Confidence 764332 3568889988631 11 1112223334569999999887654
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.6e-05 Score=87.22 Aligned_cols=285 Identities=15% Similarity=0.096 Sum_probs=138.9
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccccee
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFF 213 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 213 (789)
...+.+||||+++ |..+..| .|.++|+.+++.+...-.+.
T Consensus 39 h~~~~~s~Dgr~~-yv~~rdg----~vsviD~~~~~~v~~i~~G~----------------------------------- 78 (369)
T PF02239_consen 39 HAGLKFSPDGRYL-YVANRDG----TVSVIDLATGKVVATIKVGG----------------------------------- 78 (369)
T ss_dssp EEEEE-TT-SSEE-EEEETTS----EEEEEETTSSSEEEEEE-SS-----------------------------------
T ss_pred eeEEEecCCCCEE-EEEcCCC----eEEEEECCcccEEEEEecCC-----------------------------------
Confidence 3456799999986 4455444 69999999998765321111
Q ss_pred eEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEE
Q 003878 214 FFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCW 293 (789)
Q Consensus 214 ~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~ 293 (789)
...+++.|+||++++.+.. .+.++.+++..+-..-..+-.
T Consensus 79 ----------------------~~~~i~~s~DG~~~~v~n~------------------~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 79 ----------------------NPRGIAVSPDGKYVYVANY------------------EPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp ----------------------EEEEEEE--TTTEEEEEEE------------------ETTEEEEEETTT--EEEEEE-
T ss_pred ----------------------CcceEEEcCCCCEEEEEec------------------CCCceeEeccccccceeeccc
Confidence 2367999999999987743 234566666655322111111
Q ss_pred e-cCC--CCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-cccceeEEEecC
Q 003878 294 K-DPE--HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIAND 369 (789)
Q Consensus 294 ~-~~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~d 369 (789)
. .+. ......++.-||++...++...+ ..+||++|..+.. .. ...... +....-..|+|+
T Consensus 119 ~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd----~~~I~vVdy~d~~-----------~~-~~~~i~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 119 GGMPVDGPESRVAAIVASPGRPEFVVNLKD----TGEIWVVDYSDPK-----------NL-KVTTIKVGRFPHDGGFDPD 182 (369)
T ss_dssp -EE-TTTS---EEEEEE-SSSSEEEEEETT----TTEEEEEETTTSS-----------CE-EEEEEE--TTEEEEEE-TT
T ss_pred ccccccccCCCceeEEecCCCCEEEEEEcc----CCeEEEEEecccc-----------cc-ceeeecccccccccccCcc
Confidence 1 000 11223456678888877666543 4679999987631 11 111111 111122458999
Q ss_pred CCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCC-C--ceeeeEEEecCCEEEEEEEeCCeE--------EEEEEECC
Q 003878 370 DTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAE-R--DVLESATAVNLNQMIVSYLSDVKY--------VLQIRDLK 438 (789)
Q Consensus 370 G~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~-~--~~i~~v~~~~~~~lv~~~~~~g~~--------~L~~~dl~ 438 (789)
|++++...+.. .+|..+|+++++ ...++.-.. . ..+..+ +.+....+......+.. .+.+++..
T Consensus 183 gry~~va~~~s---n~i~viD~~~~k-~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~ 257 (369)
T PF02239_consen 183 GRYFLVAANGS---NKIAVIDTKTGK-LVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDY 257 (369)
T ss_dssp SSEEEEEEGGG---TEEEEEETTTTE-EEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTT
T ss_pred cceeeeccccc---ceeEEEeeccce-EEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhh
Confidence 99988766542 388888988765 222222110 0 111111 12212222222222211 12234555
Q ss_pred CCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeeeccCCCCCCCCCcEEEEEEecCCC
Q 003878 439 NGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDG 518 (789)
Q Consensus 439 tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg 518 (789)
+.+.+++|+.+.+.+ .+..+|+++.+++....-..-..+..+|..+.+ ....+... + ....-++.| ++||
T Consensus 258 ~wkvv~~I~~~G~gl-Fi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~-~~~~i~~~--~-----~~~~~h~ef-~~dG 327 (369)
T PF02239_consen 258 AWKVVKTIPTQGGGL-FIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK-VVKTITPG--P-----GKRVVHMEF-NPDG 327 (369)
T ss_dssp BTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE-EEE-HHHH--H-----T--EEEEEE--TTS
T ss_pred cCeEEEEEECCCCcc-eeecCCCCccEEeeccCCCCCceEEEEECcCcc-eeEEEecc--C-----CCcEeccEE-CCCC
Confidence 556667777653333 567789999999873222336799999987763 11121110 0 112344555 4678
Q ss_pred ceEEEEEEEecC
Q 003878 519 STKIPMFIVSKK 530 (789)
Q Consensus 519 ~~~i~~~l~~p~ 530 (789)
.++-+++...+
T Consensus 328 -~~v~vS~~~~~ 338 (369)
T PF02239_consen 328 -KEVWVSVWDGN 338 (369)
T ss_dssp -SEEEEEEE--T
T ss_pred -CEEEEEEecCC
Confidence 77776665433
|
... |
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.6e-05 Score=87.38 Aligned_cols=214 Identities=14% Similarity=0.130 Sum_probs=145.0
Q ss_pred eccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 220 LVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 220 s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
.=.+|.+.||.+|. +.+...++|.-.|.+|++.. .+--++.+|+..+.
T Consensus 283 gFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~------------------~klgQLlVweWqsE---- 340 (893)
T KOG0291|consen 283 GFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGC------------------SKLGQLLVWEWQSE---- 340 (893)
T ss_pred EecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcC------------------CccceEEEEEeecc----
Confidence 33678888888887 45667899999999999863 22335666666432
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEec
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIAN 368 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~ 368 (789)
.-|++...|-..+..++.||||++|+-.+. ...|.++|...| .++........... ..|+.
T Consensus 341 sYVlKQQgH~~~i~~l~YSpDgq~iaTG~e-----DgKVKvWn~~Sg-------------fC~vTFteHts~Vt~v~f~~ 402 (893)
T KOG0291|consen 341 SYVLKQQGHSDRITSLAYSPDGQLIATGAE-----DGKVKVWNTQSG-------------FCFVTFTEHTSGVTAVQFTA 402 (893)
T ss_pred ceeeeccccccceeeEEECCCCcEEEeccC-----CCcEEEEeccCc-------------eEEEEeccCCCceEEEEEEe
Confidence 234444444445678899999999986654 355888887763 23333322221111 23777
Q ss_pred CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc
Q 003878 369 DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI 448 (789)
Q Consensus 369 dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~ 448 (789)
+|+.++ .+.. ++.+-.+|+......++.+.+.+ .....++..+.+-+++....+. -.|++|+.+||+.+..|..
T Consensus 403 ~g~~ll-ssSL---DGtVRAwDlkRYrNfRTft~P~p-~QfscvavD~sGelV~AG~~d~-F~IfvWS~qTGqllDiLsG 476 (893)
T KOG0291|consen 403 RGNVLL-SSSL---DGTVRAWDLKRYRNFRTFTSPEP-IQFSCVAVDPSGELVCAGAQDS-FEIFVWSVQTGQLLDILSG 476 (893)
T ss_pred cCCEEE-Eeec---CCeEEeeeecccceeeeecCCCc-eeeeEEEEcCCCCEEEeeccce-EEEEEEEeecCeeeehhcC
Confidence 776554 3333 36788999988766788776664 4556677776567777777765 4799999999998777877
Q ss_pred CCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEEC
Q 003878 449 EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 449 ~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl 483 (789)
+.+.|++++++++++.++ ..|+.. ++.+||.
T Consensus 477 HEgPVs~l~f~~~~~~La--S~SWDk--TVRiW~i 507 (893)
T KOG0291|consen 477 HEGPVSGLSFSPDGSLLA--SGSWDK--TVRIWDI 507 (893)
T ss_pred CCCcceeeEEccccCeEE--eccccc--eEEEEEe
Confidence 789999999999998443 346654 5666665
|
|
| >COG4757 Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.9e-07 Score=87.09 Aligned_cols=244 Identities=16% Similarity=0.084 Sum_probs=134.4
Q ss_pred EEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcc
Q 003878 511 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGG 590 (789)
Q Consensus 511 ~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~ 590 (789)
+.++.+|| ..+++..+ |.+ ++.+-.|..-|+++. ...|...+..+++.+||.|+..||||.|+.-..-....
T Consensus 8 ~~l~~~DG-~~l~~~~~-pA~----~~~~g~~~va~a~Gv--~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~ 79 (281)
T COG4757 8 AHLPAPDG-YSLPGQRF-PAD----GKASGRLVVAGATGV--GQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGS 79 (281)
T ss_pred cccccCCC-ccCccccc-cCC----CCCCCcEEecccCCc--chhHhHHHHHHhhccCceEEEEecccccCCCccccccC
Confidence 56788999 99998876 443 455555566666664 34455556778888999999999999887543322111
Q ss_pred cccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCC--ccccccc---c----cc
Q 003878 591 ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG--VMDMLRY---H----KF 661 (789)
Q Consensus 591 ~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p--~~d~~~~---~----~~ 661 (789)
.-....-...|+.++++++.+.- -.-.+..+|||+||.+.+.+. ++|..-.++|..++ +.-.... . ..
T Consensus 80 ~~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~-~~~k~~a~~vfG~gagwsg~m~~~~~l~~~~l~ 156 (281)
T COG4757 80 QWRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLG-QHPKYAAFAVFGSGAGWSGWMGLRERLGAVLLW 156 (281)
T ss_pred ccchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeecccc-cCcccceeeEeccccccccchhhhhcccceeec
Confidence 12223345679999999998742 223699999999998876654 45643333343322 1111000 0 00
Q ss_pred ----cCCccch-----hhcCCC-CcHH-HHHHHHhcC--c-ccCCCCCCCC--CCCCCCCCCeEEEEecCCCCCCCcHHH
Q 003878 662 ----TIGHAWV-----SDFGCS-EEEE-EFYWLIKYS--P-LHNVRRPWEQ--NPDKPFQYPSTLLLTADHDDRVVPLHS 725 (789)
Q Consensus 662 ----~~~~~~~-----~e~g~p-~~~~-~~~~l~~~s--P-~~~v~~~~~~--~~~~~~~~pp~Li~~g~~D~~V~~~~~ 725 (789)
.....|. .-.|.+ +.|- .+...+.+. | |...+....+ +-++ ...+|+..+...+|+-+|+...
T Consensus 157 ~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~ya-aVrtPi~~~~~~DD~w~P~As~ 235 (281)
T COG4757 157 NLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYA-AVRTPITFSRALDDPWAPPASR 235 (281)
T ss_pred cccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHH-HhcCceeeeccCCCCcCCHHHH
Confidence 0000110 011222 1111 111111111 1 1111100000 0000 1267999999999999999988
Q ss_pred HHHHHHHHHhhccCCCCCCCCCcEEEEEeCCC----CcCCCCchhhHHHHHHHHHHHH
Q 003878 726 LKLLATMQYVLCTSLENSPQTNPIIGRIERKA----GHGVGLPTQKMIDEAADRYGFM 779 (789)
Q Consensus 726 ~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~----gH~~~~~~~~~~~~~~~~~~fl 779 (789)
.+|....++ .|++++.++.. ||.....+.- .....+++.|+
T Consensus 236 d~f~~~y~n------------Apl~~~~~~~~~~~lGH~gyfR~~~-Ealwk~~L~w~ 280 (281)
T COG4757 236 DAFASFYRN------------APLEMRDLPRAEGPLGHMGYFREPF-EALWKEMLGWF 280 (281)
T ss_pred HHHHHhhhc------------CcccceecCcccCcccchhhhccch-HHHHHHHHHhh
Confidence 888887764 47777776665 8864332210 13344555554
|
|
| >PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.5e-08 Score=111.21 Aligned_cols=221 Identities=16% Similarity=0.185 Sum_probs=120.2
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCC---CCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccc
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP---SFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 591 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~---~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~ 591 (789)
+.|- +.+-|+.|+......+.||+|++|||....... .+.. ..++.+++++|+.+|||-|- +| |.....
T Consensus 105 sEDC---L~LnI~~P~~~~~~~~lPV~v~ihGG~f~~G~~~~~~~~~--~~~~~~~~vivVt~nYRlg~-~G--fl~~~~ 176 (535)
T PF00135_consen 105 SEDC---LYLNIYTPSNASSNSKLPVMVWIHGGGFMFGSGSFPPYDG--ASLAASKDVIVVTINYRLGA-FG--FLSLGD 176 (535)
T ss_dssp ES------EEEEEEETSSSSTTSEEEEEEE--STTTSSCTTSGGGHT--HHHHHHHTSEEEEE----HH-HH--H-BSSS
T ss_pred CchH---HHHhhhhccccccccccceEEEeecccccCCCcccccccc--cccccCCCEEEEEecccccc-cc--cccccc
Confidence 4555 666778898865555899999999985433332 2222 34555699999999999542 11 111111
Q ss_pred cc--CCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC--CCceeEEEecCCccc-cccccccc-
Q 003878 592 LA--KKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQR--PDLFGCALAHVGVMD-MLRYHKFT- 662 (789)
Q Consensus 592 ~~--~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--pd~f~a~v~~~p~~d-~~~~~~~~- 662 (789)
.. .+...+.|.+.|++|+.++ ---||++|.|+|+|+||..+...+... ..+|+.+|+++|..- ........
T Consensus 177 ~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs~~~~~~~~~~~~ 256 (535)
T PF00135_consen 177 LDAPSGNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGSALSPWATSENPE 256 (535)
T ss_dssp TTSHBSTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--TTSTTSSBSHHH
T ss_pred cccCchhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccccccccccccccc
Confidence 11 2445689999999999876 224999999999999999998877762 249999999998322 21111111
Q ss_pred -CCccchhhcCCCCc--HHHHHHHHhcCcccCCCCC---CCCCCCCCCC-CCeEEEEecCCCCCCCcHHHHHHHHHHHHh
Q 003878 663 -IGHAWVSDFGCSEE--EEEFYWLIKYSPLHNVRRP---WEQNPDKPFQ-YPSTLLLTADHDDRVVPLHSLKLLATMQYV 735 (789)
Q Consensus 663 -~~~~~~~e~g~p~~--~~~~~~l~~~sP~~~v~~~---~~~~~~~~~~-~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~ 735 (789)
.........|++.. .+..+.|++.++-.-++.. +.. ..... ..|++ |..+-+..+..+.+.=+
T Consensus 257 ~~~~~la~~lgc~~~~~~~~l~cLR~~~~~~L~~a~~~~~~~--~~~~~~f~Pvv------Dg~~lp~~p~~~~~~g~-- 326 (535)
T PF00135_consen 257 QQAQKLAKALGCDDSDSSDILECLRSLPAEELLAAQNKLWPE--SGFFPPFGPVV------DGDFLPDSPSELLKSGR-- 326 (535)
T ss_dssp HHHHHHHHHTTSTTSSHHHHHHHHHHS-HHHHHHHHHCCSTT--SSSSSSSSBBE------BSSSSSS-HHHHHHTTT--
T ss_pred hhhhhhhhhhccccccccchhhhhhhhhccchhhhhhccccc--ccccccCCcee------cccccccCccccccccc--
Confidence 11122334577622 3456666665442211100 000 00000 23542 33344555555443311
Q ss_pred hccCCCCCCCCCcEEEEEeCCCCcCC
Q 003878 736 LCTSLENSPQTNPIIGRIERKAGHGV 761 (789)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~~~~~gH~~ 761 (789)
...+|+.+-...++|..+
T Consensus 327 --------~~~vP~liG~t~~Eg~~~ 344 (535)
T PF00135_consen 327 --------FNKVPLLIGSTSDEGSLF 344 (535)
T ss_dssp --------STTSEEEEEEETBTTHHH
T ss_pred --------cceeeeecccccccchhh
Confidence 227899888888888864
|
Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A .... |
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.8e-05 Score=84.66 Aligned_cols=241 Identities=12% Similarity=0.148 Sum_probs=152.3
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.+..++++-.|.+||++.+. -.+|-||+..+...+-.+- + |+.
T Consensus 309 ~I~t~~~N~tGDWiA~g~~k----lgQLlVweWqsEsYVlKQQ-g------H~~-------------------------- 351 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSK----LGQLLVWEWQSESYVLKQQ-G------HSD-------------------------- 351 (893)
T ss_pred eeeEEEecccCCEEEEcCCc----cceEEEEEeeccceeeecc-c------ccc--------------------------
Confidence 45677788899999997654 4488888887765442221 1 110
Q ss_pred eeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 292 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~ 292 (789)
+...++.||||+.|+-... ..+|.+|+...+-. ...
T Consensus 352 -----------------------~i~~l~YSpDgq~iaTG~e-------------------DgKVKvWn~~SgfC--~vT 387 (893)
T KOG0291|consen 352 -----------------------RITSLAYSPDGQLIATGAE-------------------DGKVKVWNTQSGFC--FVT 387 (893)
T ss_pred -----------------------ceeeEEECCCCcEEEeccC-------------------CCcEEEEeccCceE--EEE
Confidence 2578999999998875432 23578887654322 234
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEE--EecCC
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV--IANDD 370 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~s~dG 370 (789)
|.++ ...+.++.|+.+|+.|+-.+-++ .|..+|+... ..++..+......... ..|.|
T Consensus 388 FteH--ts~Vt~v~f~~~g~~llssSLDG-----tVRAwDlkRY-------------rNfRTft~P~p~QfscvavD~sG 447 (893)
T KOG0291|consen 388 FTEH--TSGVTAVQFTARGNVLLSSSLDG-----TVRAWDLKRY-------------RNFRTFTSPEPIQFSCVAVDPSG 447 (893)
T ss_pred eccC--CCceEEEEEEecCCEEEEeecCC-----eEEeeeeccc-------------ceeeeecCCCceeeeEEEEcCCC
Confidence 4443 44467899999999887666443 3777787653 1233333222222222 34446
Q ss_pred CEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCC-ceeeecccC
Q 003878 371 TVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNG-SLLHQLPIE 449 (789)
Q Consensus 371 ~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG-~~~~~l~~~ 449 (789)
. +++.... ..+.|++|++++|+ ...++... +..+.++++++.+.++++.+.|- .|++||.=+. ...+++...
T Consensus 448 e-lV~AG~~--d~F~IfvWS~qTGq-llDiLsGH-EgPVs~l~f~~~~~~LaS~SWDk--TVRiW~if~s~~~vEtl~i~ 520 (893)
T KOG0291|consen 448 E-LVCAGAQ--DSFEIFVWSVQTGQ-LLDILSGH-EGPVSGLSFSPDGSLLASGSWDK--TVRIWDIFSSSGTVETLEIR 520 (893)
T ss_pred C-EEEeecc--ceEEEEEEEeecCe-eeehhcCC-CCcceeeEEccccCeEEeccccc--eEEEEEeeccCceeeeEeec
Confidence 5 4444433 46999999999997 45555544 36678877777677888888886 6777876321 233555543
Q ss_pred CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 450 IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 450 ~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
..+..++++|||+++.++.. -+.|-.||...+
T Consensus 521 -sdvl~vsfrPdG~elaVaTl----dgqItf~d~~~~ 552 (893)
T KOG0291|consen 521 -SDVLAVSFRPDGKELAVATL----DGQITFFDIKEA 552 (893)
T ss_pred -cceeEEEEcCCCCeEEEEEe----cceEEEEEhhhc
Confidence 33557899999999997643 346667776544
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.7e-05 Score=90.81 Aligned_cols=161 Identities=12% Similarity=-0.029 Sum_probs=90.3
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...++|+|++..++.+.. ....|.+|++.++.. ...+.. ...+.++.|+|||+.|+.
T Consensus 128 V~sVaf~P~g~~iLaSgS------------------~DgtIrIWDl~tg~~--~~~i~~---~~~V~SlswspdG~lLat 184 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSG------------------FDSFVNIWDIENEKR--AFQINM---PKKLSSLKWNIKGNLLSG 184 (568)
T ss_pred EEEEEECCCCCeEEEEEe------------------CCCeEEEEECCCCcE--EEEEec---CCcEEEEEECCCCCEEEE
Confidence 578999999988876532 234688999976542 222222 233668999999998876
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc--eeEE----EecCCCEEEEEECCCCCCceEEEEE
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA--QYEV----IANDDTVFTFLTNKDAPKYKIIRVD 390 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~----~s~dG~~l~~~tn~~~~~~~L~~~d 390 (789)
... ...|.++|+.++. ....+...... .... ++++++.|+.....+.....|.++|
T Consensus 185 ~s~-----D~~IrIwD~Rsg~-------------~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWD 246 (568)
T PTZ00420 185 TCV-----GKHMHIIDPRKQE-------------IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWD 246 (568)
T ss_pred Eec-----CCEEEEEECCCCc-------------EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEE
Confidence 543 2458899998742 11122111111 1111 3477777665444332234699999
Q ss_pred CCCCCCeEEeccCCC-CceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCc
Q 003878 391 LKEPNDWFEVIPEAE-RDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGS 441 (789)
Q Consensus 391 l~~~~~~~~l~~~~~-~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~ 441 (789)
+.........+.... ...+. ..+.+ ++.+++++..|+ .|++|++..+.
T Consensus 247 lr~~~~pl~~~~ld~~~~~L~-p~~D~~tg~l~lsGkGD~--tIr~~e~~~~~ 296 (568)
T PTZ00420 247 LKNTTSALVTMSIDNASAPLI-PHYDESTGLIYLIGKGDG--NCRYYQHSLGS 296 (568)
T ss_pred CCCCCCceEEEEecCCccceE-EeeeCCCCCEEEEEECCC--eEEEEEccCCc
Confidence 885331222222111 11111 12223 356777777776 68888886554
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-05 Score=86.57 Aligned_cols=286 Identities=14% Similarity=0.030 Sum_probs=169.1
Q ss_pred CCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec---ccccccccccccCccceeeeeeccccccccccc
Q 003878 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA---DALSWVCFCFSHSFGYFFHLTISLLNVPTYKLF 205 (789)
Q Consensus 129 ~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 205 (789)
.|+-.|..+.+-|.|-+++ +|+-.|++++||...-...- ..|..+ =.|..+|....|.+..+
T Consensus 165 hgtk~Vsal~~Dp~GaR~~-----sGs~Dy~v~~wDf~gMdas~~~fr~l~P~----------E~h~i~sl~ys~Tg~~i 229 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFV-----SGSLDYTVKFWDFQGMDASMRSFRQLQPC----------ETHQINSLQYSVTGDQI 229 (641)
T ss_pred CCceEEEEeeecCCCceee-----eccccceEEEEecccccccchhhhccCcc----------cccccceeeecCCCCeE
Confidence 3566788999999999998 78889999999998652211 112221 12566777777888755
Q ss_pred cccccceeeEEEeeeccccceee-------eeeec-ccc-----cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCC
Q 003878 206 LYLRGIFFFFYLFSLVKSTIYSF-------WSVVS-QFK-----FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN 272 (789)
Q Consensus 206 ~~~~~~~~~~~~~~s~~~g~~~l-------~~~~~-~~~-----~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~ 272 (789)
+-+.|- ..+-+-|++|..-+ |-.++ .++ ...-.|.|+.+..|.+...
T Consensus 230 Lvvsg~---aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~----------------- 289 (641)
T KOG0772|consen 230 LVVSGS---AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY----------------- 289 (641)
T ss_pred EEEecC---cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecC-----------------
Confidence 555443 23444577765533 22222 222 1456899999999888543
Q ss_pred cccEEEEEECCCCCCCcEEEEecCCCCee--EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCC
Q 003878 273 LYHEFYYHFLGTKQSEDILCWKDPEHPKY--IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 350 (789)
Q Consensus 273 ~~~~i~~~~lg~~~~~~~~~~~~~~~~~~--~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 350 (789)
...+++|++....++..++-..+..... ....+|++||++|+..+.+++ |-+|+..+.. .+ +..
T Consensus 290 -DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGS-----IQ~W~~~~~~-----v~---p~~ 355 (641)
T KOG0772|consen 290 -DGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGS-----IQIWDKGSRT-----VR---PVM 355 (641)
T ss_pred -CCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCc-----eeeeecCCcc-----cc---cce
Confidence 2346777765443333333333322221 346789999999887775543 4455543210 00 000
Q ss_pred ccE-eeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEecc--CCC-CceeeeEEEecCCEEEEEEEe
Q 003878 351 PFV-KLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP--EAE-RDVLESATAVNLNQMIVSYLS 426 (789)
Q Consensus 351 ~~~-~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~--~~~-~~~i~~v~~~~~~~lv~~~~~ 426 (789)
... ....+.+..-..||.||++|+-. +.+..|-+|||...+ +.|.. .-+ ........+++++.|++....
T Consensus 356 ~vk~AH~~g~~Itsi~FS~dg~~LlSR----g~D~tLKvWDLrq~k--kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 356 KVKDAHLPGQDITSISFSYDGNYLLSR----GFDDTLKVWDLRQFK--KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred EeeeccCCCCceeEEEeccccchhhhc----cCCCceeeeeccccc--cchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 011 11122222334589999987732 345679999998765 22211 110 012245667887888887654
Q ss_pred C----CeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEE
Q 003878 427 D----VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISF 469 (789)
Q Consensus 427 ~----g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ 469 (789)
- +...|+++|..+=+.+..|..+..+|....|.|.-++|++..
T Consensus 430 ~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 430 APNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred ccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeec
Confidence 3 234799999876666677777766666677888877777654
|
|
| >KOG2112 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2e-06 Score=83.53 Aligned_cols=187 Identities=16% Similarity=0.137 Sum_probs=116.9
Q ss_pred cEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEee--c----CCCCCChhHHhcccccC-Ccch---HHHHHHHHHH
Q 003878 539 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANI--R----GGGEYGEEWHKGGALAK-KQNC---FDDFISASEY 608 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~--R----G~g~~g~~~~~~~~~~~-~~~~---~~D~~~~~~~ 608 (789)
-+||++||-..+... +.....+ +..+..-.++|+- | -+|..+..|.+...... .... +.-..+.+..
T Consensus 4 atIi~LHglGDsg~~--~~~~~~~-l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~ 80 (206)
T KOG2112|consen 4 ATIIFLHGLGDSGSG--WAQFLKQ-LPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIAN 80 (206)
T ss_pred EEEEEEecCCCCCcc--HHHHHHc-CCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHH
Confidence 479999996443222 2221112 3334455555531 1 24555666777543221 1112 2222333444
Q ss_pred HHHc---CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHh
Q 003878 609 LISA---GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIK 685 (789)
Q Consensus 609 L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~ 685 (789)
|+++ ..++++||+|.|.|+||.+++.++..+|.-..+++...++..-.. . +.|
T Consensus 81 Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~-----------~--~~~----------- 136 (206)
T KOG2112|consen 81 LIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRAS-----------I--GLP----------- 136 (206)
T ss_pred HHHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccch-----------h--hcc-----------
Confidence 4433 236889999999999999999999988765555555555432100 0 000
Q ss_pred cCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCch
Q 003878 686 YSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT 765 (789)
Q Consensus 686 ~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~ 765 (789)
..... ..++|++..||+.|+.||..-..+..+.|+.. +..++++.|++.+|....
T Consensus 137 -----~~~~~--------~~~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~----------~~~~~f~~y~g~~h~~~~-- 191 (206)
T KOG2112|consen 137 -----GWLPG--------VNYTPILLCHGTADPLVPFRFGEKSAQFLKSL----------GVRVTFKPYPGLGHSTSP-- 191 (206)
T ss_pred -----CCccc--------cCcchhheecccCCceeehHHHHHHHHHHHHc----------CCceeeeecCCccccccH--
Confidence 00000 02589999999999999999999999999987 778999999999998643
Q ss_pred hhHHHHHHHHHHHHHH
Q 003878 766 QKMIDEAADRYGFMAK 781 (789)
Q Consensus 766 ~~~~~~~~~~~~fl~~ 781 (789)
+++.++..|+..
T Consensus 192 ----~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 192 ----QELDDLKSWIKT 203 (206)
T ss_pred ----HHHHHHHHHHHH
Confidence 456677778765
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.6e-05 Score=83.52 Aligned_cols=263 Identities=18% Similarity=0.167 Sum_probs=156.4
Q ss_pred eEeCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCce------EEEE
Q 003878 87 FKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSD------WATI 160 (789)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~------~~~i 160 (789)
.++|+++.|.-..+|.+...|++++..++ +.+-|. +. .....++.|++||+.+.|+....... ..+|
T Consensus 132 Spdg~~la~~~s~~G~e~~~l~v~Dl~tg--~~l~d~--i~---~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 132 SPDGKRLAYSLSDGGSEWYTLRVFDLETG--KFLPDG--IE---NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp TTTSSEEEEEEEETTSSEEEEEEEETTTT--EEEEEE--EE---EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred CCCCCEEEEEecCCCCceEEEEEEECCCC--cCcCCc--cc---ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 45899999999999999999999987655 333332 10 01122389999999999998655544 7899
Q ss_pred EEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceE
Q 003878 161 KLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSI 240 (789)
Q Consensus 161 ~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~ 240 (789)
+.+.+.|+......+-.. ++.. +...++
T Consensus 205 ~~~~~gt~~~~d~lvfe~---------------------~~~~-------------------------------~~~~~~ 232 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEE---------------------PDEP-------------------------------FWFVSV 232 (414)
T ss_dssp EEEETTS-GGG-EEEEC----------------------TTCT-------------------------------TSEEEE
T ss_pred EEEECCCChHhCeeEEee---------------------cCCC-------------------------------cEEEEE
Confidence 999998874332111110 1110 002467
Q ss_pred EEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCC---CCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 241 AWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTK---QSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 241 ~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~---~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.+|+|++.|++..... .. ...+|+.++... ..+-.++........+. + ...|..+++.
T Consensus 233 ~~s~d~~~l~i~~~~~--------------~~-~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~--v--~~~~~~~yi~ 293 (414)
T PF02897_consen 233 SRSKDGRYLFISSSSG--------------TS-ESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY--V--DHHGDRLYIL 293 (414)
T ss_dssp EE-TTSSEEEEEEESS--------------SS-EEEEEEEECCCTTTSS-SEEEEEESSSS-EEE--E--EEETTEEEEE
T ss_pred EecCcccEEEEEEEcc--------------cc-CCeEEEEeccccCCCcCCcEEEeCCCCceEEE--E--EccCCEEEEe
Confidence 8899999999876542 12 367999999874 33344555443322222 2 2227777777
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccE-eeecccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECC-CC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV-KLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLK-EP 394 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~-~l~~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~-~~ 394 (789)
++.. .....|+.+++++.. ...+. .+....+ .....++..+++|++..+++ ...+|.++++. +.
T Consensus 294 Tn~~-a~~~~l~~~~l~~~~-----------~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~-~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 294 TNDD-APNGRLVAVDLADPS-----------PAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYREN-GSSRLRVYDLDDGK 360 (414)
T ss_dssp E-TT--TT-EEEEEETTSTS-----------GGGEEEEEE--SSSEEEEEEEEETTEEEEEEEET-TEEEEEEEETT-TE
T ss_pred eCCC-CCCcEEEEecccccc-----------cccceeEEcCCCCceeEEEEEEECCEEEEEEEEC-CccEEEEEECCCCc
Confidence 7643 346789999998732 11123 3333222 12334566788998888775 46899999998 43
Q ss_pred CCeEEeccCCCCceeeeEEEec-CCEEEEEEEeCC-eEEEEEEECCCCce
Q 003878 395 NDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDV-KYVLQIRDLKNGSL 442 (789)
Q Consensus 395 ~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g-~~~L~~~dl~tG~~ 442 (789)
. ...+ +......+.++.... .+.+.+.++.-. ++.++.+|+++|+.
T Consensus 361 ~-~~~~-~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 361 E-SREI-PLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp E-EEEE-ESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred E-Eeee-cCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 3 2222 222234455554333 256776666554 55999999998875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.5e-06 Score=81.83 Aligned_cols=158 Identities=13% Similarity=-0.046 Sum_probs=92.8
Q ss_pred EEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcE
Q 003878 541 LLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKL 620 (789)
Q Consensus 541 ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i 620 (789)
|+.+||- +.+....|.+-+..-+.+. +.|-.++. .. -|+.+.++.|.+.=-...+.+
T Consensus 1 v~IvhG~-~~s~~~HW~~wl~~~l~~~-~~V~~~~~------------------~~---P~~~~W~~~l~~~i~~~~~~~ 57 (171)
T PF06821_consen 1 VLIVHGY-GGSPPDHWQPWLERQLENS-VRVEQPDW------------------DN---PDLDEWVQALDQAIDAIDEPT 57 (171)
T ss_dssp EEEE--T-TSSTTTSTHHHHHHHHTTS-EEEEEC--------------------TS-----HHHHHHHHHHCCHC-TTTE
T ss_pred CEEeCCC-CCCCccHHHHHHHHhCCCC-eEEecccc------------------CC---CCHHHHHHHHHHHHhhcCCCe
Confidence 4566773 3444466776666666644 66666553 11 134445555554411123469
Q ss_pred EEEeeChHHHHHHHHH-HhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCC
Q 003878 621 CIEGGSNGGLLVGACI-NQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQN 699 (789)
Q Consensus 621 ~i~G~S~GG~l~~~~~-~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~ 699 (789)
+++|||.|...++..+ .+....++++++.+|+-....... ..+. ..+.+......
T Consensus 58 ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~~~-------~~~~------------~~f~~~p~~~l----- 113 (171)
T PF06821_consen 58 ILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPEPF-------PPEL------------DGFTPLPRDPL----- 113 (171)
T ss_dssp EEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHHCC-------TCGG------------CCCTTSHCCHH-----
T ss_pred EEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCcccccch-------hhhc------------cccccCccccc-----
Confidence 9999999999999998 777889999999999743200000 0000 11111111111
Q ss_pred CCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchh
Q 003878 700 PDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQ 766 (789)
Q Consensus 700 ~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~ 766 (789)
.-|.+++.++||+.||+..+.+++++|.. ++...+++||.......
T Consensus 114 ------~~~~~viaS~nDp~vp~~~a~~~A~~l~a---------------~~~~~~~~GHf~~~~G~ 159 (171)
T PF06821_consen 114 ------PFPSIVIASDNDPYVPFERAQRLAQRLGA---------------ELIILGGGGHFNAASGF 159 (171)
T ss_dssp ------HCCEEEEEETTBSSS-HHHHHHHHHHHT----------------EEEEETS-TTSSGGGTH
T ss_pred ------CCCeEEEEcCCCCccCHHHHHHHHHHcCC---------------CeEECCCCCCcccccCC
Confidence 12448999999999999999999999864 58888999998765433
|
The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A. |
| >TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.2e-06 Score=97.40 Aligned_cols=110 Identities=15% Similarity=0.073 Sum_probs=69.2
Q ss_pred ccEEEEEcCCCCccCCCCCC--HHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 538 HPCLLYGYGGFNISVTPSFS--VSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~--~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
.+-||++||......-.... ..+..+|.++||.|+++|.||.|.....+ .......+++.++++++.+. +
T Consensus 188 ~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~------~~ddY~~~~i~~al~~v~~~--~ 259 (532)
T TIGR01838 188 KTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADK------TFDDYIRDGVIAALEVVEAI--T 259 (532)
T ss_pred CCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccccC------ChhhhHHHHHHHHHHHHHHh--c
Confidence 34466777753322211111 12445555599999999999876432211 11122335677888888764 4
Q ss_pred CCCcEEEEeeChHHHHHHH----HHHhC-CCceeEEEecCCcccc
Q 003878 616 QSRKLCIEGGSNGGLLVGA----CINQR-PDLFGCALAHVGVMDM 655 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~----~~~~~-pd~f~a~v~~~p~~d~ 655 (789)
..+++.++|+|+||.+++. ++..+ |+++++++.....+|+
T Consensus 260 g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df 304 (532)
T TIGR01838 260 GEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDF 304 (532)
T ss_pred CCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCC
Confidence 5679999999999998532 34444 7788888877665664
|
This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.8e-05 Score=75.58 Aligned_cols=198 Identities=15% Similarity=0.094 Sum_probs=126.9
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
+..+..+||++.|+.. ....|+++++.+.....+..|+.+.+ .+.++.|--||+|++-
T Consensus 43 VNrLeiTpdk~~LAaa--------------------~~qhvRlyD~~S~np~Pv~t~e~h~k--NVtaVgF~~dgrWMyT 100 (311)
T KOG0315|consen 43 VNRLEITPDKKDLAAA--------------------GNQHVRLYDLNSNNPNPVATFEGHTK--NVTAVGFQCDGRWMYT 100 (311)
T ss_pred eeeEEEcCCcchhhhc--------------------cCCeeEEEEccCCCCCceeEEeccCC--ceEEEEEeecCeEEEe
Confidence 5678889999988744 33458999999887767778887643 3567889999999976
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc-ccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
.+.+ ..+.++|+.... ..+.... .........|+...|+. .+ .++.|.++|+....
T Consensus 101 gseD-----gt~kIWdlR~~~--------------~qR~~~~~spVn~vvlhpnQteLis-~d---qsg~irvWDl~~~~ 157 (311)
T KOG0315|consen 101 GSED-----GTVKIWDLRSLS--------------CQRNYQHNSPVNTVVLHPNQTELIS-GD---QSGNIRVWDLGENS 157 (311)
T ss_pred cCCC-----ceEEEEeccCcc--------------cchhccCCCCcceEEecCCcceEEe-ec---CCCcEEEEEccCCc
Confidence 5543 336677876521 1111111 00111234566556653 22 24679999997764
Q ss_pred CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeee------cccCCeeEEEeecccCCcEEEEEE
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQ------LPIEIGSVNAISARREDSVVFISF 469 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~------l~~~~~~v~~~s~s~d~~~l~~~~ 469 (789)
--.+++|+. +..++++++.+++..++.....| ..|+|++-++....+ +....+.+..--.|||++.++-.
T Consensus 158 c~~~liPe~-~~~i~sl~v~~dgsml~a~nnkG--~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~- 233 (311)
T KOG0315|consen 158 CTHELIPED-DTSIQSLTVMPDGSMLAAANNKG--NCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATC- 233 (311)
T ss_pred cccccCCCC-CcceeeEEEcCCCcEEEEecCCc--cEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEee-
Confidence 346778877 47899999988777777676665 789999864432222 22235555555678999876632
Q ss_pred cCCCCCcEEEEEECCCC
Q 003878 470 TSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 470 ss~~~P~~ly~~dl~tg 486 (789)
++ -.+++.++.++-
T Consensus 234 ss---dktv~iwn~~~~ 247 (311)
T KOG0315|consen 234 SS---DKTVKIWNTDDF 247 (311)
T ss_pred cC---CceEEEEecCCc
Confidence 22 347778877655
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.8e-06 Score=92.09 Aligned_cols=196 Identities=15% Similarity=0.203 Sum_probs=132.8
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
+.+..|+||.+.|+-+. ....+++|.+.+.. -..+|.+...|.+ .+.|+|-|-|.+-
T Consensus 454 Vyg~sFsPd~rfLlScS-------------------ED~svRLWsl~t~s--~~V~y~GH~~PVw--dV~F~P~GyYFat 510 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCS-------------------EDSSVRLWSLDTWS--CLVIYKGHLAPVW--DVQFAPRGYYFAT 510 (707)
T ss_pred eeeeeecccccceeecc-------------------CCcceeeeecccce--eEEEecCCCccee--eEEecCCceEEEe
Confidence 46788999998887543 23458888888753 3567887766765 5779999988775
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
.+.+. ...+|..|-.. |++-..... +.....|.|+..+++ |. ..+..+-.||+.+|.
T Consensus 511 as~D~---tArLWs~d~~~---------------PlRifaghlsDV~cv~FHPNs~Y~a--TG--SsD~tVRlWDv~~G~ 568 (707)
T KOG0263|consen 511 ASHDQ---TARLWSTDHNK---------------PLRIFAGHLSDVDCVSFHPNSNYVA--TG--SSDRTVRLWDVSTGN 568 (707)
T ss_pred cCCCc---eeeeeecccCC---------------chhhhcccccccceEEECCcccccc--cC--CCCceEEEEEcCCCc
Confidence 54332 45677666432 122122211 222234788776544 32 345678889998887
Q ss_pred CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCC
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIP 475 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P 475 (789)
...++.. ....+..+.++++++.+++..+++ .|.+||+.+|+.+.++..+.+.+.+++++.||..++.. + .-
T Consensus 569 -~VRiF~G-H~~~V~al~~Sp~Gr~LaSg~ed~--~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasg--g--~D 640 (707)
T KOG0263|consen 569 -SVRIFTG-HKGPVTALAFSPCGRYLASGDEDG--LIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASG--G--AD 640 (707)
T ss_pred -EEEEecC-CCCceEEEEEcCCCceEeecccCC--cEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEec--C--CC
Confidence 3445543 347789999999888888888887 78999999888766665567888899999999976632 2 34
Q ss_pred cEEEEEECCC
Q 003878 476 GIVYQCNLKT 485 (789)
Q Consensus 476 ~~ly~~dl~t 485 (789)
.++.+||+..
T Consensus 641 nsV~lWD~~~ 650 (707)
T KOG0263|consen 641 NSVRLWDLTK 650 (707)
T ss_pred CeEEEEEchh
Confidence 5777778754
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.4e-06 Score=89.56 Aligned_cols=191 Identities=18% Similarity=0.050 Sum_probs=117.2
Q ss_pred cEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccc
Q 003878 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 131 ~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
...|+.++|.|+|++|+ .++-..+.++||+.|+..+-. .++ ||.|
T Consensus 261 ~~RVs~VafHPsG~~L~-----TasfD~tWRlWD~~tk~ElL~-QEG------Hs~~----------------------- 305 (459)
T KOG0272|consen 261 LARVSRVAFHPSGKFLG-----TASFDSTWRLWDLETKSELLL-QEG------HSKG----------------------- 305 (459)
T ss_pred hhhheeeeecCCCceee-----ecccccchhhcccccchhhHh-hcc------cccc-----------------------
Confidence 35688899999999998 455567999999999976532 122 2222
Q ss_pred ceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcE
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDI 290 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~ 290 (789)
..+++|.|||.-++-.. ...--++|++.++. .+
T Consensus 306 --------------------------v~~iaf~~DGSL~~tGG-------------------lD~~~RvWDlRtgr--~i 338 (459)
T KOG0272|consen 306 --------------------------VFSIAFQPDGSLAATGG-------------------LDSLGRVWDLRTGR--CI 338 (459)
T ss_pred --------------------------cceeEecCCCceeeccC-------------------ccchhheeecccCc--EE
Confidence 58899999997665322 22234577888763 35
Q ss_pred EEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-eeEEEecC
Q 003878 291 LCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIAND 369 (789)
Q Consensus 291 ~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~d 369 (789)
+++++ +...+.++.|||+|-.|+-.+.+ +.+.++|+.... .+..+....+. .-..++|+
T Consensus 339 m~L~g--H~k~I~~V~fsPNGy~lATgs~D-----nt~kVWDLR~r~-------------~ly~ipAH~nlVS~Vk~~p~ 398 (459)
T KOG0272|consen 339 MFLAG--HIKEILSVAFSPNGYHLATGSSD-----NTCKVWDLRMRS-------------ELYTIPAHSNLVSQVKYSPQ 398 (459)
T ss_pred EEecc--cccceeeEeECCCceEEeecCCC-----CcEEEeeecccc-------------cceecccccchhhheEeccc
Confidence 66665 44557799999999988765432 446667776521 01111111111 11236776
Q ss_pred CCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCC
Q 003878 370 DTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV 428 (789)
Q Consensus 370 G~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g 428 (789)
+..+++....+ ..+-.+.-.+....+.|..|. ..+-++.+++++..+++...|.
T Consensus 399 ~g~fL~TasyD---~t~kiWs~~~~~~~ksLaGHe--~kV~s~Dis~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 399 EGYFLVTASYD---NTVKIWSTRTWSPLKSLAGHE--GKVISLDISPDSQAIATSSFDR 452 (459)
T ss_pred CCeEEEEcccC---cceeeecCCCcccchhhcCCc--cceEEEEeccCCceEEEeccCc
Confidence 56555554433 334444444443345555554 4567888888777777776664
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.5e-05 Score=80.79 Aligned_cols=212 Identities=13% Similarity=0.066 Sum_probs=104.8
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC--cEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE--DILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~--~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
..++++|||+.||.+... ...|..+++.++... .+.......+ ...+.++|||++++
T Consensus 83 ~~i~~~~~g~~l~v~~~~------------------~~~v~v~~~~~~g~~~~~~~~~~~~~~---~~~~~~~p~g~~l~ 141 (330)
T PRK11028 83 THISTDHQGRFLFSASYN------------------ANCVSVSPLDKDGIPVAPIQIIEGLEG---CHSANIDPDNRTLW 141 (330)
T ss_pred eEEEECCCCCEEEEEEcC------------------CCeEEEEEECCCCCCCCceeeccCCCc---ccEeEeCCCCCEEE
Confidence 578999999999877432 234666666533211 1111111111 23567899999997
Q ss_pred EEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCC--
Q 003878 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE-- 393 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~-- 393 (789)
+.... ...|+++|+++.. .+... .........+.......++|||+++|+.... ...|..++++.
T Consensus 142 v~~~~----~~~v~v~d~~~~g-~l~~~-----~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~---~~~v~v~~~~~~~ 208 (330)
T PRK11028 142 VPCLK----EDRIRLFTLSDDG-HLVAQ-----EPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL---NSSVDVWQLKDPH 208 (330)
T ss_pred EeeCC----CCEEEEEEECCCC-ccccc-----CCCceecCCCCCCceEEECCCCCEEEEEecC---CCEEEEEEEeCCC
Confidence 65532 3568999987521 00000 0000111112223345689999988875432 35666666653
Q ss_pred CC--CeEEe--ccCCC--CceeeeEEEecCCEEEEEEEeCCeEEEEEEECCC-Cceee---ecccCCeeEEEeecccCCc
Q 003878 394 PN--DWFEV--IPEAE--RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN-GSLLH---QLPIEIGSVNAISARREDS 463 (789)
Q Consensus 394 ~~--~~~~l--~~~~~--~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~t-G~~~~---~l~~~~~~v~~~s~s~d~~ 463 (789)
++ ....+ +|... ......+.++++++.++...+ +...|.+|+++. +...+ .+... .....+.+++|++
T Consensus 209 ~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~-~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~ 286 (330)
T PRK11028 209 GEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR-TASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGK 286 (330)
T ss_pred CCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC-CCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCC
Confidence 32 11111 22210 111224667775544433332 224677777642 22111 11111 1123467889999
Q ss_pred EEEEEEcCCCCCcEEEEEECCCC
Q 003878 464 VVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 464 ~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
.++++.. ...--.+|.+|..++
T Consensus 287 ~l~va~~-~~~~v~v~~~~~~~g 308 (330)
T PRK11028 287 YLIAAGQ-KSHHISVYEIDGETG 308 (330)
T ss_pred EEEEEEc-cCCcEEEEEEcCCCC
Confidence 8887642 222234444454555
|
|
| >KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.7e-06 Score=91.73 Aligned_cols=146 Identities=18% Similarity=0.210 Sum_probs=104.8
Q ss_pred CCCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCC---HHHHHHHHcCCeEEEEEeecC
Q 003878 502 DRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFS---VSRTILMRHLGAVFCIANIRG 578 (789)
Q Consensus 502 ~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~---~~~~~~l~~~G~~v~~~~~RG 578 (789)
...++.+|...+++.|| .-+.+. -.|+.. +++|+|++.||-..++..+.-. ....-+|+.+||-|-.-|.||
T Consensus 42 ~~~gy~~E~h~V~T~Dg-YiL~lh-RIp~~~---~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG 116 (403)
T KOG2624|consen 42 EKYGYPVEEHEVTTEDG-YILTLH-RIPRGK---KKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRG 116 (403)
T ss_pred HHcCCceEEEEEEccCC-eEEEEe-eecCCC---CCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcC
Confidence 34567889999999999 733333 334432 7899999999987766654332 223445666999999999999
Q ss_pred CCCCChhHHhcccc-c-------CCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC---ceeEEE
Q 003878 579 GGEYGEEWHKGGAL-A-------KKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD---LFGCAL 647 (789)
Q Consensus 579 ~g~~g~~~~~~~~~-~-------~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd---~f~a~v 647 (789)
..|.++-..-... . +..-...|+-|.++++.+. +..+++..+|||.|+.....++.++|+ .++..+
T Consensus 117 -n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~--T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~ 193 (403)
T KOG2624|consen 117 -NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEK--TGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFI 193 (403)
T ss_pred -cccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHh--ccccceEEEEEEccchhheehhcccchhhhhhheee
Confidence 6666542222111 1 1122457999999999876 577899999999999999999999887 577888
Q ss_pred ecCCcccc
Q 003878 648 AHVGVMDM 655 (789)
Q Consensus 648 ~~~p~~d~ 655 (789)
+.+|++-+
T Consensus 194 aLAP~~~~ 201 (403)
T KOG2624|consen 194 ALAPAAFP 201 (403)
T ss_pred eecchhhh
Confidence 88887643
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.4e-05 Score=75.65 Aligned_cols=244 Identities=12% Similarity=0.064 Sum_probs=140.3
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..+.++.|.-||.+|| .|+-..+..||+++....+.+ +. +..|+.
T Consensus 21 ~~v~Sv~wn~~g~~la-----sgs~dktv~v~n~e~~r~~~~---~~--~~gh~~------------------------- 65 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLA-----SGSFDKTVSVWNLERDRFRKE---LV--YRGHTD------------------------- 65 (313)
T ss_pred hcceEEEEcccCceee-----ecccCCceEEEEecchhhhhh---hc--ccCCCc-------------------------
Confidence 4578899999999999 555566888999887743321 11 011211
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
....++|.|-..-++.+.. ....|.+|++.+......+
T Consensus 66 ------------------------svdql~w~~~~~d~~atas------------------~dk~ir~wd~r~~k~~~~i 103 (313)
T KOG1407|consen 66 ------------------------SVDQLCWDPKHPDLFATAS------------------GDKTIRIWDIRSGKCTARI 103 (313)
T ss_pred ------------------------chhhheeCCCCCcceEEec------------------CCceEEEEEeccCcEEEEe
Confidence 1467889887766666643 2345888888765432222
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCC
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDT 371 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~ 371 (789)
.... + .....|||||+++++... ..+|-.+|..+-. ........+...-..|. ...
T Consensus 104 ~~~~--e---ni~i~wsp~g~~~~~~~k-----dD~it~id~r~~~-------------~~~~~~~~~e~ne~~w~-~~n 159 (313)
T KOG1407|consen 104 ETKG--E---NINITWSPDGEYIAVGNK-----DDRITFIDARTYK-------------IVNEEQFKFEVNEISWN-NSN 159 (313)
T ss_pred eccC--c---ceEEEEcCCCCEEEEecC-----cccEEEEEecccc-------------eeehhcccceeeeeeec-CCC
Confidence 2221 1 135789999999988653 3457777876521 00000001111112355 445
Q ss_pred EEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCe
Q 003878 372 VFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIG 451 (789)
Q Consensus 372 ~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~ 451 (789)
.++|++|-. +..+|+.++ .-+....+-.|.. .---+.++++++-++.+..|. .+.+||++.--..+.++-..+
T Consensus 160 d~Fflt~Gl-G~v~ILsyp--sLkpv~si~AH~s--nCicI~f~p~GryfA~GsADA--lvSLWD~~ELiC~R~isRldw 232 (313)
T KOG1407|consen 160 DLFFLTNGL-GCVEILSYP--SLKPVQSIKAHPS--NCICIEFDPDGRYFATGSADA--LVSLWDVDELICERCISRLDW 232 (313)
T ss_pred CEEEEecCC-ceEEEEecc--ccccccccccCCc--ceEEEEECCCCceEeeccccc--eeeccChhHhhhheeeccccC
Confidence 677777743 345555554 2222344445542 223466777677777777776 567788863223344444456
Q ss_pred eEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 452 SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 452 ~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.|..++++.||+.|+ |...-..|=.-+++||.
T Consensus 233 pVRTlSFS~dg~~lA----SaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 233 PVRTLSFSHDGRMLA----SASEDHFIDIAEVETGD 264 (313)
T ss_pred ceEEEEeccCcceee----ccCccceEEeEecccCC
Confidence 677889999998665 33344445555566774
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.2e-05 Score=85.53 Aligned_cols=250 Identities=14% Similarity=0.038 Sum_probs=149.1
Q ss_pred EEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCc
Q 003878 107 LYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSF 186 (789)
Q Consensus 107 ~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~ 186 (789)
+|+-+..+++...|.+.+ ...+.++.|+|+|++||.... ...+.|||.++.+.+.. +... |.
T Consensus 199 vylW~~~s~~v~~l~~~~------~~~vtSv~ws~~G~~LavG~~-----~g~v~iwD~~~~k~~~~-~~~~------h~ 260 (484)
T KOG0305|consen 199 VYLWSASSGSVTELCSFG------EELVTSVKWSPDGSHLAVGTS-----DGTVQIWDVKEQKKTRT-LRGS------HA 260 (484)
T ss_pred EEEEecCCCceEEeEecC------CCceEEEEECCCCCEEEEeec-----CCeEEEEehhhcccccc-ccCC------cC
Confidence 455544455555666654 234789999999999997654 45899999988765542 1110 11
Q ss_pred cceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCC
Q 003878 187 GYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 266 (789)
Q Consensus 187 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~ 266 (789)
+ +.+.++|. +..+. +
T Consensus 261 ~------------------------------------------------rvg~laW~--~~~ls-s-------------- 275 (484)
T KOG0305|consen 261 S------------------------------------------------RVGSLAWN--SSVLS-S-------------- 275 (484)
T ss_pred c------------------------------------------------eeEEEecc--CceEE-E--------------
Confidence 1 36889997 22332 2
Q ss_pred ccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCccccccc
Q 003878 267 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR 346 (789)
Q Consensus 267 ~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~ 346 (789)
..+...|..+++...+..-. +.. .+...+.++.|++||++++-..+ .+.++++|..+.
T Consensus 276 ----Gsr~~~I~~~dvR~~~~~~~-~~~--~H~qeVCgLkws~d~~~lASGgn-----DN~~~Iwd~~~~---------- 333 (484)
T KOG0305|consen 276 ----GSRDGKILNHDVRISQHVVS-TLQ--GHRQEVCGLKWSPDGNQLASGGN-----DNVVFIWDGLSP---------- 333 (484)
T ss_pred ----ecCCCcEEEEEEecchhhhh-hhh--cccceeeeeEECCCCCeeccCCC-----ccceEeccCCCc----------
Confidence 22334566677665443211 122 23445788999999999974432 467888888441
Q ss_pred CCCCccEeeecccccee-EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEE
Q 003878 347 DGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 425 (789)
Q Consensus 347 ~~~~~~~~l~~~~~~~~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~ 425 (789)
.+...+.....+.. ..|+|..+-|+.. .-+..+..|..+|..++.....+-. ...|.++.|++...=+++.-
T Consensus 334 ---~p~~~~~~H~aAVKA~awcP~q~~lLAs-GGGs~D~~i~fwn~~~g~~i~~vdt---gsQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 334 ---EPKFTFTEHTAAVKALAWCPWQSGLLAT-GGGSADRCIKFWNTNTGARIDSVDT---GSQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred ---cccEEEeccceeeeEeeeCCCccCceEE-cCCCcccEEEEEEcCCCcEeccccc---CCceeeEEEcCCCCEEEEec
Confidence 12223332222222 2388865544433 2334567899999988763333322 35689999998432233333
Q ss_pred eCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEE
Q 003878 426 SDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFIS 468 (789)
Q Consensus 426 ~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~ 468 (789)
-....+|.+|+..+-+.+..+..+..-|..++++||+..++..
T Consensus 407 G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~ 449 (484)
T KOG0305|consen 407 GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTG 449 (484)
T ss_pred CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEe
Confidence 3334578888876545545666565667788999999876643
|
|
| >PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-06 Score=92.34 Aligned_cols=210 Identities=18% Similarity=0.206 Sum_probs=121.0
Q ss_pred EEEEEe-cCCCCCCCCccEEEEEcCCC-CccCCCCC---CHHHHHHHHcCCeEEEEEeecCCC--CCChhHHhcccccCC
Q 003878 523 PMFIVS-KKNIKLDGSHPCLLYGYGGF-NISVTPSF---SVSRTILMRHLGAVFCIANIRGGG--EYGEEWHKGGALAKK 595 (789)
Q Consensus 523 ~~~l~~-p~~~~~~~~~P~ll~~hGg~-~~~~~~~~---~~~~~~~l~~~G~~v~~~~~RG~g--~~g~~~~~~~~~~~~ 595 (789)
..|++. |.+.++ +.-|+|+|+|||. .....|.. -..+..++. ..++++.||.... +.| ..-
T Consensus 107 s~Wlvk~P~~~~p-k~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~--~~SILvLDYsLt~~~~~~---------~~y 174 (374)
T PF10340_consen 107 SYWLVKAPNRFKP-KSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP--EVSILVLDYSLTSSDEHG---------HKY 174 (374)
T ss_pred eEEEEeCCcccCC-CCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC--CCeEEEEeccccccccCC---------CcC
Confidence 367776 655433 3459999999983 22222221 112334454 4588999987543 121 223
Q ss_pred cchHHHHHHHHHHHH-HcCCCCCCcEEEEeeChHHHHHHHHHHh--C---CCceeEEEecCCcccccccccccC------
Q 003878 596 QNCFDDFISASEYLI-SAGYTQSRKLCIEGGSNGGLLVGACINQ--R---PDLFGCALAHVGVMDMLRYHKFTI------ 663 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~-~~~~~d~~~i~i~G~S~GG~l~~~~~~~--~---pd~f~a~v~~~p~~d~~~~~~~~~------ 663 (789)
+.-..++++..++|+ +.|. ++|.++|-||||.|++.++.. . .-.-+.+|+.+|.+++........
T Consensus 175 PtQL~qlv~~Y~~Lv~~~G~---~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~~~~n 251 (374)
T PF10340_consen 175 PTQLRQLVATYDYLVESEGN---KNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSSYHDN 251 (374)
T ss_pred chHHHHHHHHHHHHHhccCC---CeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCcccccc
Confidence 444678999999999 5554 589999999999999876532 1 113579999999999873211000
Q ss_pred ------CccchhhcCC----CCcHHHHHHHHhcCcccCCCC-----CCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHH
Q 003878 664 ------GHAWVSDFGC----SEEEEEFYWLIKYSPLHNVRR-----PWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKL 728 (789)
Q Consensus 664 ------~~~~~~e~g~----p~~~~~~~~l~~~sP~~~v~~-----~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~ 728 (789)
.......|+. ..+++. .....|+-++.. .|.+- .....++|+.|+++-. -.+..+|
T Consensus 252 ~~~D~l~~~~~~~~~~~y~~~~~~~~---~~~~~~~~n~~~n~d~~~W~~I----~~~~~vfVi~Ge~Evf--rddI~~~ 322 (374)
T PF10340_consen 252 EKRDMLSYKGLSMFGDAYIGNNDPEN---DLNSLPFVNIEYNFDAEDWKDI----LKKYSVFVIYGEDEVF--RDDILEW 322 (374)
T ss_pred ccccccchhhHHHHHHhhcccccccc---ccccCCccCcccCCChhHHHHh----ccCCcEEEEECCcccc--HHHHHHH
Confidence 0000011111 001111 011223333221 11110 0234799999997754 4588999
Q ss_pred HHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCC
Q 003878 729 LATMQYVLCTSLENSPQTNPIIGRIERKAGHGV 761 (789)
Q Consensus 729 ~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~ 761 (789)
++++....+ ..-+.+....+.+++.|..
T Consensus 323 ~~~~~~~~~-----~~~~~~~nv~~~~~G~Hi~ 350 (374)
T PF10340_consen 323 AKKLNDVKP-----NKFSNSNNVYIDEGGIHIG 350 (374)
T ss_pred HHHHhhcCc-----cccCCcceEEEecCCcccc
Confidence 999986511 1124467888899999975
|
In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved []. |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.5e-05 Score=90.71 Aligned_cols=196 Identities=16% Similarity=0.145 Sum_probs=112.3
Q ss_pred cceEEEEeC-CcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEec-CCcEE
Q 003878 237 FSSIAWTHD-SKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE-DGQYL 314 (789)
Q Consensus 237 ~~~~~wspD-g~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~Sp-DG~~l 314 (789)
...++|+|. ++.|+... ....|.+|++.+.. .+..+. .+...+.++.|+| ||..|
T Consensus 535 v~~l~~~~~~~~~las~~-------------------~Dg~v~lWd~~~~~--~~~~~~--~H~~~V~~l~~~p~~~~~L 591 (793)
T PLN00181 535 LSGICWNSYIKSQVASSN-------------------FEGVVQVWDVARSQ--LVTEMK--EHEKRVWSIDYSSADPTLL 591 (793)
T ss_pred eeeEEeccCCCCEEEEEe-------------------CCCeEEEEECCCCe--EEEEec--CCCCCEEEEEEcCCCCCEE
Confidence 467899885 45554332 23468889987642 222233 2344567899997 77777
Q ss_pred EEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEE-ecCCCEEEEEECCCCCCceEEEEECCC
Q 003878 315 VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI-ANDDTVFTFLTNKDAPKYKIIRVDLKE 393 (789)
Q Consensus 315 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-s~dG~~l~~~tn~~~~~~~L~~~dl~~ 393 (789)
+..+. ...|.++|+.++. ....+..........| +++|..|+..+ .++.|..+|+..
T Consensus 592 ~Sgs~-----Dg~v~iWd~~~~~-------------~~~~~~~~~~v~~v~~~~~~g~~latgs----~dg~I~iwD~~~ 649 (793)
T PLN00181 592 ASGSD-----DGSVKLWSINQGV-------------SIGTIKTKANICCVQFPSESGRSLAFGS----ADHKVYYYDLRN 649 (793)
T ss_pred EEEcC-----CCEEEEEECCCCc-------------EEEEEecCCCeEEEEEeCCCCCEEEEEe----CCCeEEEEECCC
Confidence 65543 3458889987642 1112211111111224 34677666432 346899999876
Q ss_pred CC-CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCC------ceeeecccCCeeEEEeecccCCcEEE
Q 003878 394 PN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNG------SLLHQLPIEIGSVNAISARREDSVVF 466 (789)
Q Consensus 394 ~~-~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG------~~~~~l~~~~~~v~~~s~s~d~~~l~ 466 (789)
+. ....+..+. ..+..+.+.+ +..+++...|+ .|.+||+..+ +.+..+..+...+..+++++++..++
T Consensus 650 ~~~~~~~~~~h~--~~V~~v~f~~-~~~lvs~s~D~--~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~la 724 (793)
T PLN00181 650 PKLPLCTMIGHS--KTVSYVRFVD-SSTLVSSSTDN--TLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIA 724 (793)
T ss_pred CCccceEecCCC--CCEEEEEEeC-CCEEEEEECCC--EEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEE
Confidence 54 133343343 4567787775 56666777776 6888998633 22334443344455677888877544
Q ss_pred EEEcCCCCCcEEEEEECCCC
Q 003878 467 ISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 467 ~~~ss~~~P~~ly~~dl~tg 486 (789)
.. + .-..++.|+....
T Consensus 725 sg--s--~D~~v~iw~~~~~ 740 (793)
T PLN00181 725 TG--S--ETNEVFVYHKAFP 740 (793)
T ss_pred EE--e--CCCEEEEEECCCC
Confidence 22 2 3457888887654
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00018 Score=77.47 Aligned_cols=122 Identities=15% Similarity=0.194 Sum_probs=72.6
Q ss_pred Eec-CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-----cccc---eeEEEecCCCEEEEEE
Q 003878 307 VTE-DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-----GFDA---QYEVIANDDTVFTFLT 377 (789)
Q Consensus 307 ~Sp-DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-----~~~~---~~~~~s~dG~~l~~~t 377 (789)
+++ ||++++++.. ..|+++|+.+..... ..++..... ++.. ....+++||+++|++.
T Consensus 201 ~~~~dg~~~~vs~e------G~V~~id~~~~~~~~--------~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~ 266 (352)
T TIGR02658 201 YSNKSGRLVWPTYT------GKIFQIDLSSGDAKF--------LPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLA 266 (352)
T ss_pred eEcCCCcEEEEecC------CeEEEEecCCCccee--------cceeeeccccccccccCCCcceeEEEcCCCCEEEEEe
Confidence 366 8888776542 559999976532110 111111110 1111 1134788999999966
Q ss_pred CCC------CCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCE-EEEEEEeCCeEEEEEEECCCCceeeec
Q 003878 378 NKD------APKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGSLLHQL 446 (789)
Q Consensus 378 n~~------~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl~tG~~~~~l 446 (789)
+.. .+..+|..+|+++.+....+ +-. ....++++++|++ +++..+.. ...|.++|..+++.++.+
T Consensus 267 ~~~~~~thk~~~~~V~ViD~~t~kvi~~i-~vG--~~~~~iavS~Dgkp~lyvtn~~-s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 267 DQRAKWTHKTASRFLFVVDAKTGKRLRKI-ELG--HEIDSINVSQDAKPLLYALSTG-DKTLYIFDAETGKELSSV 338 (352)
T ss_pred cCCccccccCCCCEEEEEECCCCeEEEEE-eCC--CceeeEEECCCCCeEEEEeCCC-CCcEEEEECcCCeEEeee
Confidence 432 23358999999988733333 222 3456888998766 55444432 346999999988876766
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-05 Score=83.56 Aligned_cols=220 Identities=17% Similarity=0.108 Sum_probs=134.6
Q ss_pred EEEeeeccccceeeeeeec-------------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEE
Q 003878 215 FYLFSLVKSTIYSFWSVVS-------------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHF 281 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~-------------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (789)
++|.++..+.+.-+|.+.. ...+..+.||||.++++-...++ .+.+|+
T Consensus 237 kyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e-------------------~~~lwD 297 (519)
T KOG0293|consen 237 KYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE-------------------VLSLWD 297 (519)
T ss_pred eeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH-------------------heeecc
Confidence 5788888888888888876 22246789999999998653322 278888
Q ss_pred CCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc
Q 003878 282 LGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA 361 (789)
Q Consensus 282 lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (789)
..++.. ...|+.. ......+.+|-|||..++..+.+ ..++.+|+++.. ...|.-... ..
T Consensus 298 v~tgd~--~~~y~~~-~~~S~~sc~W~pDg~~~V~Gs~d-----r~i~~wdlDgn~-----------~~~W~gvr~--~~ 356 (519)
T KOG0293|consen 298 VDTGDL--RHLYPSG-LGFSVSSCAWCPDGFRFVTGSPD-----RTIIMWDLDGNI-----------LGNWEGVRD--PK 356 (519)
T ss_pred CCcchh--hhhcccC-cCCCcceeEEccCCceeEecCCC-----CcEEEecCCcch-----------hhccccccc--ce
Confidence 877643 3444433 12335678999999998765533 458899988632 111221110 00
Q ss_pred ee-EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCC
Q 003878 362 QY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNG 440 (789)
Q Consensus 362 ~~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG 440 (789)
.+ ..+++||++++.++. +.++..++.++... +.++.+. ..+.++.+++++++++.-..+. .+.+||++..
T Consensus 357 v~dlait~Dgk~vl~v~~----d~~i~l~~~e~~~d-r~lise~--~~its~~iS~d~k~~LvnL~~q--ei~LWDl~e~ 427 (519)
T KOG0293|consen 357 VHDLAITYDGKYVLLVTV----DKKIRLYNREARVD-RGLISEE--QPITSFSISKDGKLALVNLQDQ--EIHLWDLEEN 427 (519)
T ss_pred eEEEEEcCCCcEEEEEec----ccceeeechhhhhh-hcccccc--CceeEEEEcCCCcEEEEEcccC--eeEEeecchh
Confidence 11 236789999987763 24566667665431 2244433 6688999999777777666554 7899999844
Q ss_pred ceeeecccC---CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 441 SLLHQLPIE---IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 441 ~~~~~l~~~---~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+.+++.... ...|.+ .+-...+.++. |-..-..+|.|+..+|+
T Consensus 428 ~lv~kY~Ghkq~~fiIrS-CFgg~~~~fia---SGSED~kvyIWhr~sgk 473 (519)
T KOG0293|consen 428 KLVRKYFGHKQGHFIIRS-CFGGGNDKFIA---SGSEDSKVYIWHRISGK 473 (519)
T ss_pred hHHHHhhcccccceEEEe-ccCCCCcceEE---ecCCCceEEEEEccCCc
Confidence 433333222 222321 22111122322 33567899999998886
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00035 Score=75.04 Aligned_cols=239 Identities=12% Similarity=0.065 Sum_probs=123.8
Q ss_pred EEEeeeccccceeeeeeec------cccc------ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEEC
Q 003878 215 FYLFSLVKSTIYSFWSVVS------QFKF------SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFL 282 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~------~~~~------~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 282 (789)
+++|.||++|..|||.+++ |+.. .+..+||+++.|+|.... ..|+..+|
T Consensus 49 kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~-------------------~~l~~vdL 109 (386)
T PF14583_consen 49 KLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG-------------------RSLRRVDL 109 (386)
T ss_dssp EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT-------------------TEEEEEET
T ss_pred EEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC-------------------CeEEEEEC
Confidence 9999999999999999999 4443 357899999999998532 35899999
Q ss_pred CCCCCCcEEEEecCCCCeeEEEEEE--ecCCcEEEEEEEcCCC-----------------CceEEEEEECCCCCCCcccc
Q 003878 283 GTKQSEDILCWKDPEHPKYIFSGHV--TEDGQYLVMCIEENCD-----------------PVNKVYYCDLSALPEGLEGF 343 (789)
Q Consensus 283 g~~~~~~~~~~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~-----------------~~~~i~~~d~~~g~~~~~~~ 343 (789)
.|.. ...||+.++. +.....| ..|+..++.....+.+ ..+.|+.+|+.+|.
T Consensus 110 ~T~e--~~~vy~~p~~--~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~------ 179 (386)
T PF14583_consen 110 DTLE--ERVVYEVPDD--WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE------ 179 (386)
T ss_dssp TT----EEEEEE--TT--EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--------
T ss_pred CcCc--EEEEEECCcc--cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc------
Confidence 8863 4578888754 3333444 4678887655433311 34689999999863
Q ss_pred cccCCCCccEeee-ccccceeEEEecCCCEEEEEECCC---CCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-C
Q 003878 344 KKRDGLLPFVKLI-DGFDAQYEVIANDDTVFTFLTNKD---APKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-N 418 (789)
Q Consensus 344 ~~~~~~~~~~~l~-~~~~~~~~~~s~dG~~l~~~tn~~---~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~ 418 (789)
...+. .........+||....++..+.++ .-..||+.++.++.. .+.+.++.+...+.-=.|.++ .
T Consensus 180 --------~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-~~~v~~~~~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 180 --------RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN-VKKVHRRMEGESVGHEFWVPDGS 250 (386)
T ss_dssp --------EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEEEEEEEE-TTSS
T ss_pred --------eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc-ceeeecCCCCcccccccccCCCC
Confidence 22222 222234556788544444444442 224589999988765 566666554444433345664 4
Q ss_pred EEEE-EEEeCCe-EEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcC-C-----------CCCcEEEEEECC
Q 003878 419 QMIV-SYLSDVK-YVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS-F-----------LIPGIVYQCNLK 484 (789)
Q Consensus 419 ~lv~-~~~~~g~-~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss-~-----------~~P~~ly~~dl~ 484 (789)
.+++ .+...+. ..|..+++++++.......| ..+ .+..++|++.++=--+. + ..-+-+|++++.
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-~~~-H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~ 328 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-WCS-HFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE 328 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEE-EEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-cee-eeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence 4544 4444443 36788899988762222233 222 34456676643221111 1 112377888888
Q ss_pred CCCceEEEeee
Q 003878 485 TETPEMKIFRE 495 (789)
Q Consensus 485 tg~~~~~~l~~ 495 (789)
++. ...+..
T Consensus 329 ~~~--~~~l~~ 337 (386)
T PF14583_consen 329 AGR--FRKLAR 337 (386)
T ss_dssp TTE--EEEEEE
T ss_pred cCc--eeeeee
Confidence 773 444443
|
|
| >cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-06 Score=92.47 Aligned_cols=113 Identities=11% Similarity=0.050 Sum_probs=78.8
Q ss_pred CCccEEEEEcCCCCccCCCCCCHH-HHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVS-RTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 614 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~-~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~ 614 (789)
...|++|++||..+.. ...|... ...++...++.|+++|+++++... +..+. ..-...-+++...+++|.+...
T Consensus 34 ~~~p~vilIHG~~~~~-~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~~~--y~~a~--~~~~~v~~~la~~l~~L~~~~g 108 (275)
T cd00707 34 PSRPTRFIIHGWTSSG-EESWISDLRKAYLSRGDYNVIVVDWGRGANPN--YPQAV--NNTRVVGAELAKFLDFLVDNTG 108 (275)
T ss_pred CCCCcEEEEcCCCCCC-CCcHHHHHHHHHHhcCCCEEEEEECccccccC--hHHHH--HhHHHHHHHHHHHHHHHHHhcC
Confidence 4578999999965543 2233322 234666568999999999863321 11110 0111122567778888887755
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
.+.++|.++|||+||.+++.++.+.|++++.++...|..
T Consensus 109 ~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~ 147 (275)
T cd00707 109 LSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAG 147 (275)
T ss_pred CChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCc
Confidence 678899999999999999999999999999999887654
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.9e-05 Score=90.57 Aligned_cols=267 Identities=14% Similarity=0.058 Sum_probs=135.1
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+...+.-+.|||||++|| .|+|..-|-||+-+.. ...+++| -+....+++.-|.+
T Consensus 68 h~~sv~CVR~S~dG~~lA-----sGSDD~~v~iW~~~~~-----~~~~~fg-----------s~g~~~~vE~wk~~---- 122 (942)
T KOG0973|consen 68 HDGSVNCVRFSPDGSYLA-----SGSDDRLVMIWERAEI-----GSGTVFG-----------STGGAKNVESWKVV---- 122 (942)
T ss_pred ccCceeEEEECCCCCeEe-----eccCcceEEEeeeccc-----CCccccc-----------ccccccccceeeEE----
Confidence 456688899999999999 5777888888987741 1111100 00001111111100
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
..+... .-++..++||||+..++-...+ +.|.+|+.-+- +.
T Consensus 123 ------~~l~~H------------~~DV~Dv~Wsp~~~~lvS~s~D-------------------nsViiwn~~tF--~~ 163 (942)
T KOG0973|consen 123 ------SILRGH------------DSDVLDVNWSPDDSLLVSVSLD-------------------NSVIIWNAKTF--EL 163 (942)
T ss_pred ------EEEecC------------CCccceeccCCCccEEEEeccc-------------------ceEEEEccccc--ee
Confidence 111111 1146789999999888755333 34667766554 23
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCc-ccccccCCCCccEeeeccccceeEEEec
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGL-EGFKKRDGLLPFVKLIDGFDAQYEVIAN 368 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~s~ 368 (789)
..++.. |...+-++.|.|-|+|++-.+.++ . |.++.+.+ .+. ..+ ..++.......-..-..|||
T Consensus 164 ~~vl~~--H~s~VKGvs~DP~Gky~ASqsdDr---t--ikvwrt~d--w~i~k~I-----t~pf~~~~~~T~f~RlSWSP 229 (942)
T KOG0973|consen 164 LKVLRG--HQSLVKGVSWDPIGKYFASQSDDR---T--LKVWRTSD--WGIEKSI-----TKPFEESPLTTFFLRLSWSP 229 (942)
T ss_pred eeeeec--ccccccceEECCccCeeeeecCCc---e--EEEEEccc--ceeeEee-----ccchhhCCCcceeeecccCC
Confidence 334443 334456899999999998776443 2 44444332 000 000 01111100000001123999
Q ss_pred CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec----C--C-----------EEEEEEEeCCeEE
Q 003878 369 DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN----L--N-----------QMIVSYLSDVKYV 431 (789)
Q Consensus 369 dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~----~--~-----------~lv~~~~~~g~~~ 431 (789)
||++|.....-+++...+-.++-.+=+.-..++.|.. .++=+.+.+ + + -+++.+..|+ .
T Consensus 230 DG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~--p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr--S 305 (942)
T KOG0973|consen 230 DGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA--PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR--S 305 (942)
T ss_pred CcCeecchhhccCCcceeEEEecCCceeeeeeecCCC--ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc--c
Confidence 9999886543344444444444322111124555542 222222111 0 1 1556666776 5
Q ss_pred EEEEECCCCceeeecc--cC--CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCC
Q 003878 432 LQIRDLKNGSLLHQLP--IE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 485 (789)
Q Consensus 432 L~~~dl~tG~~~~~l~--~~--~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~t 485 (789)
|-+|... .. +.+- .. .-.|..++|++||-.++.. ..-++++.+.++.
T Consensus 306 lSVW~T~--~~-RPl~vi~~lf~~SI~DmsWspdG~~Lfac----S~DGtV~~i~Fee 356 (942)
T KOG0973|consen 306 LSVWNTA--LP-RPLFVIHNLFNKSIVDMSWSPDGFSLFAC----SLDGTVALIHFEE 356 (942)
T ss_pred EEEEecC--CC-CchhhhhhhhcCceeeeeEcCCCCeEEEE----ecCCeEEEEEcch
Confidence 7777753 22 3332 11 3456678999998766532 1234666666543
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.1e-05 Score=76.56 Aligned_cols=262 Identities=17% Similarity=0.127 Sum_probs=136.5
Q ss_pred eccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccc
Q 003878 121 LDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVP 200 (789)
Q Consensus 121 ~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 200 (789)
+|.++|. ++.-.+..+.+|.|||+||-... ..+|++|++..=+.. .-..+ ..++|
T Consensus 77 l~~~~LK-gH~~~vt~~~FsSdGK~lat~~~-----Dr~Ir~w~~~DF~~~--eHr~~-----------------R~nve 131 (420)
T KOG2096|consen 77 LNVSVLK-GHKKEVTDVAFSSDGKKLATISG-----DRSIRLWDVRDFENK--EHRCI-----------------RQNVE 131 (420)
T ss_pred hhhhhhh-ccCCceeeeEEcCCCceeEEEeC-----CceEEEEecchhhhh--hhhHh-----------------hcccc
Confidence 4555553 44456889999999999995542 458999998762111 10111 22333
Q ss_pred ccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEE
Q 003878 201 TYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYH 280 (789)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (789)
.++ ...++|+||-+.|++.-... ..++++
T Consensus 132 ~dh---------------------------------pT~V~FapDc~s~vv~~~~g------------------~~l~vy 160 (420)
T KOG2096|consen 132 YDH---------------------------------PTRVVFAPDCKSVVVSVKRG------------------NKLCVY 160 (420)
T ss_pred CCC---------------------------------ceEEEECCCcceEEEEEccC------------------CEEEEE
Confidence 332 36789999999998875432 334544
Q ss_pred ECCCC--CC-------CcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCc
Q 003878 281 FLGTK--QS-------EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 351 (789)
Q Consensus 281 ~lg~~--~~-------~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 351 (789)
.+... .+ .|-+-|++. +...+.+...-..+++|+-.+. .++|.++++.+. .
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~k-h~v~~i~iGiA~~~k~imsas~-----dt~i~lw~lkGq--------------~ 220 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERK-HQVDIINIGIAGNAKYIMSASL-----DTKICLWDLKGQ--------------L 220 (420)
T ss_pred EeeecccCCCCcccccccccccchh-cccceEEEeecCCceEEEEecC-----CCcEEEEecCCc--------------e
Confidence 43211 10 111112221 1122234444555666654332 366899998852 1
Q ss_pred cEeeecc-ccceeEEEecCCCEEEEEECCCCCCceEEEEECC-CCC--CeEEeccCC-CCceeeeEEEecCCEEEEEEEe
Q 003878 352 FVKLIDG-FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLK-EPN--DWFEVIPEA-ERDVLESATAVNLNQMIVSYLS 426 (789)
Q Consensus 352 ~~~l~~~-~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~-~~~--~~~~l~~~~-~~~~i~~v~~~~~~~lv~~~~~ 426 (789)
+..+-.. .......+||+|+.++...- .++.+++-.=.. .|+ ....++.-. ....+..++++++..-+++.+.
T Consensus 221 L~~idtnq~~n~~aavSP~GRFia~~gF--TpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk 298 (420)
T KOG2096|consen 221 LQSIDTNQSSNYDAAVSPDGRFIAVSGF--TPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK 298 (420)
T ss_pred eeeeccccccccceeeCCCCcEEEEecC--CCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec
Confidence 1111111 11112458999987764322 133444433222 222 122222211 1134566778876677888888
Q ss_pred CCeEEEEEEECC----CCceeeecc---cC---Ce-eEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 427 DVKYVLQIRDLK----NGSLLHQLP---IE---IG-SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 427 ~g~~~L~~~dl~----tG~~~~~l~---~~---~~-~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
||. .++||.+ -|+-.+.|. .| .+ .--.++.+|.++.+++++.| .+..|..++|+
T Consensus 299 DG~--wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs-----~l~~~~se~g~ 363 (420)
T KOG2096|consen 299 DGK--WRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS-----DLKVFASEDGK 363 (420)
T ss_pred CCc--EEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC-----ceEEEEcccCc
Confidence 984 4555543 122112221 11 11 11246788999999887755 56677776664
|
|
| >COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.3e-06 Score=87.82 Aligned_cols=194 Identities=16% Similarity=0.090 Sum_probs=116.1
Q ss_pred eEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCC----eEEEEEeecCCCCCChhHHhcccccCC
Q 003878 520 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLG----AVFCIANIRGGGEYGEEWHKGGALAKK 595 (789)
Q Consensus 520 ~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G----~~v~~~~~RG~g~~g~~~~~~~~~~~~ 595 (789)
.+..+.++.|.+..+..++|+++..||-......+-. .....+++ .| .+++.+++----...+.++ .
T Consensus 80 ~~~~~vv~lppgy~~~~k~pvl~~~DG~~~~~~g~i~-~~~dsli~-~g~i~pai~vgid~~d~~~R~~~~~-------~ 150 (299)
T COG2382 80 SERRRVVYLPPGYNPLEKYPVLYLQDGQDWFRSGRIP-RILDSLIA-AGEIPPAILVGIDYIDVKKRREELH-------C 150 (299)
T ss_pred cceeEEEEeCCCCCccccccEEEEeccHHHHhcCChH-HHHHHHHH-cCCCCCceEEecCCCCHHHHHHHhc-------c
Confidence 3556778889988888999999999996443333221 22345555 45 4666666421111001111 1
Q ss_pred cchHHHHHH--HHHHHHHcC--CCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhc
Q 003878 596 QNCFDDFIS--ASEYLISAG--YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDF 671 (789)
Q Consensus 596 ~~~~~D~~~--~~~~L~~~~--~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~ 671 (789)
...+.++++ .+=++.+.- .-++++-+++|.|+||+.+++++.++|++|..+++++|.++..-... . .++
T Consensus 151 n~~~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~~~~~--~-----~~~ 223 (299)
T COG2382 151 NEAYWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWTPLDT--Q-----PQG 223 (299)
T ss_pred cHHHHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccCcccc--c-----ccc
Confidence 112222211 122222221 23678899999999999999999999999999999999776421110 0 111
Q ss_pred CCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEE
Q 003878 672 GCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIG 751 (789)
Q Consensus 672 g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l 751 (789)
. .. ...+-++.+... ..-++...+..+...++. +.+++.|+.. +.+..+
T Consensus 224 ~------~~---~~l~~~~a~~~~----------~~~~l~~g~~~~~~~~pN--r~L~~~L~~~----------g~~~~y 272 (299)
T COG2382 224 E------VA---ESLKILHAIGTD----------ERIVLTTGGEEGDFLRPN--RALAAQLEKK----------GIPYYY 272 (299)
T ss_pred c------hh---hhhhhhhccCcc----------ceEEeecCCccccccchh--HHHHHHHHhc----------CCccee
Confidence 0 11 111122223322 335566666666666654 5788899887 999999
Q ss_pred EEeCCCCcCC
Q 003878 752 RIERKAGHGV 761 (789)
Q Consensus 752 ~~~~~~gH~~ 761 (789)
..|+| ||-.
T Consensus 273 re~~G-gHdw 281 (299)
T COG2382 273 REYPG-GHDW 281 (299)
T ss_pred eecCC-CCch
Confidence 99988 9965
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00066 Score=70.46 Aligned_cols=149 Identities=13% Similarity=0.117 Sum_probs=91.2
Q ss_pred eeEEEEEEecCCcEEEEEEEcCCC--Cc--eEEEEEECCCCCCCcccccccCCCCccEeeeccccce-eEEEecCCCEEE
Q 003878 300 KYIFSGHVTEDGQYLVMCIEENCD--PV--NKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEVIANDDTVFT 374 (789)
Q Consensus 300 ~~~~~~~~SpDG~~l~~~~~~~~~--~~--~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dG~~l~ 374 (789)
.....+.++|||+ |+++...... .. ..||.++.+ +. ...+..+.... --.|+|||+.||
T Consensus 86 ~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~--------------~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 86 NRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK--------------VTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE--------------EEEEEEEESSEEEEEEETTSSEEE
T ss_pred CCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce--------------EEEEecCcccccceEECCcchhee
Confidence 4456789999999 6666543321 11 579999887 31 12222222211 234899999998
Q ss_pred EEECCCCCCceEEEEECCCCC----CeEEeccCCC-CceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC
Q 003878 375 FLTNKDAPKYKIIRVDLKEPN----DWFEVIPEAE-RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE 449 (789)
Q Consensus 375 ~~tn~~~~~~~L~~~dl~~~~----~~~~l~~~~~-~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~ 449 (789)
+... ...+|++++++... ..+.+..... .....++++..++.|++.....+ +|++++.+ |+.+..+.+|
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~--~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGG--RIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTT--EEEEEETT-SCEEEEEE-S
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCC--EEEEECCC-ccEEEEEcCC
Confidence 7543 35689999986432 1122322221 12467899988788888766554 89999998 8887888888
Q ss_pred CeeEEEeec-ccCCcEEEEEEc
Q 003878 450 IGSVNAISA-RREDSVVFISFT 470 (789)
Q Consensus 450 ~~~v~~~s~-s~d~~~l~~~~s 470 (789)
...++.+.+ -++.+.|+++..
T Consensus 224 ~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 224 VPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp SSSEEEEEEESTTSSEEEEEEB
T ss_pred CCCEEEEEEECCCCCEEEEEeC
Confidence 445666666 467788888653
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.2e-06 Score=86.95 Aligned_cols=216 Identities=17% Similarity=0.114 Sum_probs=83.5
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecC-CCCCChhHHhcccccCCcchHHHHHHHHHHHHHcC--
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRG-GGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG-- 613 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG-~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~-- 613 (789)
+.-+||++-|-........|-+.....|.+.||.++.+..+- .+++|..-. .++.+|+.++++||....
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL--------~~D~~eI~~~v~ylr~~~~g 103 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSL--------DRDVEEIAQLVEYLRSEKGG 103 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--H--------HHHHHHHHHHHHHHHHHS--
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchh--------hhHHHHHHHHHHHHHHhhcc
Confidence 345788887765545555566666777776899999999986 345553222 346799999999999873
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHhCC-----CceeEEEecCCcccccccccccC-------------------------
Q 003878 614 YTQSRKLCIEGGSNGGLLVGACINQRP-----DLFGCALAHVGVMDMLRYHKFTI------------------------- 663 (789)
Q Consensus 614 ~~d~~~i~i~G~S~GG~l~~~~~~~~p-----d~f~a~v~~~p~~d~~~~~~~~~------------------------- 663 (789)
....++|+++|||-|---++.++.... ..+.++|+++||.|-........
T Consensus 104 ~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~l 183 (303)
T PF08538_consen 104 HFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEIL 183 (303)
T ss_dssp ----S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG
T ss_pred ccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCcee
Confidence 236789999999999999888887642 46999999999998543321100
Q ss_pred Cccchhh--cCCCCcHHHHHHHHhcCcc------------c----CCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHH-
Q 003878 664 GHAWVSD--FGCSEEEEEFYWLIKYSPL------------H----NVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH- 724 (789)
Q Consensus 664 ~~~~~~e--~g~p~~~~~~~~l~~~sP~------------~----~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~- 724 (789)
+..+... |+.|-.+ ++++--.+|- . ....+ ..|+|++.+.+|.-||.+-
T Consensus 184 p~~~~~~~~~~~PiTA--~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v----------~~plLvl~Sg~DEyvP~~vd 251 (303)
T PF08538_consen 184 PREFTPLVFYDTPITA--YRFLSLASPGGDDDYFSSDLSDERLKKTFGKV----------SKPLLVLYSGKDEYVPPWVD 251 (303)
T ss_dssp ----GGTTT-SS---H--HHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG------------S-EEEEEE--TT-------
T ss_pred eccccccccCCCcccH--HHHHhccCCCCcccccCCCCCHHHHHHHhccC----------CCceEEEecCCCceeccccc
Confidence 0000000 1222221 1111111111 0 11122 4599999999999999864
Q ss_pred HHHHHHHHHHhhccCCCCCCCCC-cEEEEEeCCCCcCCCCchhh--HHHHHHHHHHHH
Q 003878 725 SLKLLATMQYVLCTSLENSPQTN-PIIGRIERKAGHGVGLPTQK--MIDEAADRYGFM 779 (789)
Q Consensus 725 ~~~~~~~L~~~~~~~~~~~~~~~-~~~l~~~~~~gH~~~~~~~~--~~~~~~~~~~fl 779 (789)
-.++.++++.+. ..+. .-.-.+.||++|....+..+ +.....++..||
T Consensus 252 k~~Ll~rw~~a~-------~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl 302 (303)
T PF08538_consen 252 KEALLERWKAAT-------NPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFL 302 (303)
T ss_dssp ----------------------------------------------------------
T ss_pred cccccccccccc-------ccccccccccccccccccccccccccccccccccccccC
Confidence 456777777651 1111 12355789999998754442 123455667766
|
This family contains many hypothetical proteins. ; PDB: 2Q0X_B. |
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00045 Score=79.36 Aligned_cols=204 Identities=9% Similarity=-0.063 Sum_probs=109.8
Q ss_pred cceEEEEeC-CcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC------CcEEEEecCCCCeeEEEEEEec
Q 003878 237 FSSIAWTHD-SKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS------EDILCWKDPEHPKYIFSGHVTE 309 (789)
Q Consensus 237 ~~~~~wspD-g~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~------~~~~~~~~~~~~~~~~~~~~Sp 309 (789)
...++|+|+ +..|+-.. ....|.+|++.+... +.+..+.. +...+..+.|+|
T Consensus 77 V~~lafsP~~~~lLASgS-------------------~DgtIrIWDi~t~~~~~~~i~~p~~~L~g--H~~~V~sVaf~P 135 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGS-------------------EDLTIRVWEIPHNDESVKEIKDPQCILKG--HKKKISIIDWNP 135 (568)
T ss_pred EEEEEEcCCCCCEEEEEe-------------------CCCeEEEEECCCCCccccccccceEEeec--CCCcEEEEEECC
Confidence 578999997 45554332 223588888865321 11112222 334467899999
Q ss_pred CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEE
Q 003878 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRV 389 (789)
Q Consensus 310 DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~ 389 (789)
++..+++++.. ...|.++|+.++. ....+..........|+++|+.|+..+ .+..|..+
T Consensus 136 ~g~~iLaSgS~----DgtIrIWDl~tg~-------------~~~~i~~~~~V~SlswspdG~lLat~s----~D~~IrIw 194 (568)
T PTZ00420 136 MNYYIMCSSGF----DSFVNIWDIENEK-------------RAFQINMPKKLSSLKWNIKGNLLSGTC----VGKHMHII 194 (568)
T ss_pred CCCeEEEEEeC----CCeEEEEECCCCc-------------EEEEEecCCcEEEEEECCCCCEEEEEe----cCCEEEEE
Confidence 99988766532 3458889998742 111121111112234899999776433 23578999
Q ss_pred ECCCCCCeEEeccCCCCceeeeEE---EecCCEEEEEEEeCC--eEEEEEEECCC-CceeeecccC--CeeEEEeecccC
Q 003878 390 DLKEPNDWFEVIPEAERDVLESAT---AVNLNQMIVSYLSDV--KYVLQIRDLKN-GSLLHQLPIE--IGSVNAISARRE 461 (789)
Q Consensus 390 dl~~~~~~~~l~~~~~~~~i~~v~---~~~~~~lv~~~~~~g--~~~L~~~dl~t-G~~~~~l~~~--~~~v~~~s~s~d 461 (789)
|+.+++....+..+........+. +++++..+++...+. ..+|.+||+.+ ++.+..+..+ .+.+ ...++++
T Consensus 195 D~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L-~p~~D~~ 273 (568)
T PTZ00420 195 DPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL-IPHYDES 273 (568)
T ss_pred ECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce-EEeeeCC
Confidence 998876334443343211111121 224344444444332 24799999874 3433333332 2222 1234455
Q ss_pred CcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 462 DSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 462 ~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
...++++.. .-..++.|++.++
T Consensus 274 tg~l~lsGk---GD~tIr~~e~~~~ 295 (568)
T PTZ00420 274 TGLIYLIGK---GDGNCRYYQHSLG 295 (568)
T ss_pred CCCEEEEEE---CCCeEEEEEccCC
Confidence 555555442 3457888887666
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.2e-05 Score=73.81 Aligned_cols=231 Identities=12% Similarity=0.085 Sum_probs=134.9
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
++..+..+.|+|-..-+.++.+ +| .+|++||+.+++.+... ....
T Consensus 63 h~~svdql~w~~~~~d~~atas-~d---k~ir~wd~r~~k~~~~i-~~~~------------------------------ 107 (313)
T KOG1407|consen 63 HTDSVDQLCWDPKHPDLFATAS-GD---KTIRIWDIRSGKCTARI-ETKG------------------------------ 107 (313)
T ss_pred CCcchhhheeCCCCCcceEEec-CC---ceEEEEEeccCcEEEEe-eccC------------------------------
Confidence 3445667778876665554443 23 48999999999876532 2211
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
..-.+.|||||.++++...+. .|-..+..+-.
T Consensus 108 --------------------------eni~i~wsp~g~~~~~~~kdD-------------------~it~id~r~~~--- 139 (313)
T KOG1407|consen 108 --------------------------ENINITWSPDGEYIAVGNKDD-------------------RITFIDARTYK--- 139 (313)
T ss_pred --------------------------cceEEEEcCCCCEEEEecCcc-------------------cEEEEEecccc---
Confidence 135789999999999875432 23333332211
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeE-EEec
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE-VIAN 368 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~ 368 (789)
.+-+++. ........|+.++...+++...++ |-++.-... +|+..+......-+. .++|
T Consensus 140 -~~~~~~~-~~e~ne~~w~~~nd~Fflt~GlG~-----v~ILsypsL-------------kpv~si~AH~snCicI~f~p 199 (313)
T KOG1407|consen 140 -IVNEEQF-KFEVNEISWNNSNDLFFLTNGLGC-----VEILSYPSL-------------KPVQSIKAHPSNCICIEFDP 199 (313)
T ss_pred -eeehhcc-cceeeeeeecCCCCEEEEecCCce-----EEEEecccc-------------ccccccccCCcceEEEEECC
Confidence 1111111 222345678877776665543222 333333221 122233222221222 3899
Q ss_pred CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc
Q 003878 369 DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI 448 (789)
Q Consensus 369 dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~ 448 (789)
+|++|++ ++.+..+-++|++.-- ....++-- +..+..++++-+++++++.++|- -|-+-+.+||..+.+|+-
T Consensus 200 ~GryfA~----GsADAlvSLWD~~ELi-C~R~isRl-dwpVRTlSFS~dg~~lASaSEDh--~IDIA~vetGd~~~eI~~ 271 (313)
T KOG1407|consen 200 DGRYFAT----GSADALVSLWDVDELI-CERCISRL-DWPVRTLSFSHDGRMLASASEDH--FIDIAEVETGDRVWEIPC 271 (313)
T ss_pred CCceEee----ccccceeeccChhHhh-hheeeccc-cCceEEEEeccCcceeeccCccc--eEEeEecccCCeEEEeec
Confidence 9999885 2334556677876532 22333333 36688899988789999999886 455667778987677754
Q ss_pred CCeeEEEeecccCCcEEEEEEcCC
Q 003878 449 EIGSVNAISARREDSVVFISFTSF 472 (789)
Q Consensus 449 ~~~~v~~~s~s~d~~~l~~~~ss~ 472 (789)
. +....++|.|....|+|+.+..
T Consensus 272 ~-~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 272 E-GPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred c-CCceeEEecCCCceeeEEecCC
Confidence 3 2333578889888888877653
|
|
| >COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.7e-05 Score=79.02 Aligned_cols=140 Identities=22% Similarity=0.233 Sum_probs=81.5
Q ss_pred EEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCe-EEEEEeecC---------CC
Q 003878 511 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGA-VFCIANIRG---------GG 580 (789)
Q Consensus 511 ~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~-~v~~~~~RG---------~g 580 (789)
..+.+.++-.+-.+++..|++..++.++|||-+.=|.- ..+.........+++.=. ..+...++. ..
T Consensus 12 ~~l~s~~~~~~yri~i~~P~~~~~~~~YpVlY~lDGn~---vf~~~~~~~~~~~~~~~~~~iv~iGye~~~~~~~~~r~~ 88 (264)
T COG2819 12 RDLKSANTGRKYRIFIATPKNYPKPGGYPVLYMLDGNA---VFNALTEIMLRILADLPPPVIVGIGYETILVFDPNRRAY 88 (264)
T ss_pred EeeeecCCCcEEEEEecCCCCCCCCCCCcEEEEecchh---hhchHHHHhhhhhhcCCCceEEEeccccccccccccccc
Confidence 33445443167788999999987777789876666642 122222222344442221 122222222 22
Q ss_pred CCChhH--H-hccc------ccCCcchHHH-HHHHHHHHHHcCC-CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEec
Q 003878 581 EYGEEW--H-KGGA------LAKKQNCFDD-FISASEYLISAGY-TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 649 (789)
Q Consensus 581 ~~g~~~--~-~~~~------~~~~~~~~~D-~~~~~~~L~~~~~-~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~ 649 (789)
.|-+.- . .+.. ...+...|.+ +..-+.=++++.| +++++.+|+|||+||++++.++..+|+.|...++.
T Consensus 89 DyTp~~~~~~~~~~~~~~~~~gGg~~~f~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~ 168 (264)
T COG2819 89 DYTPPSANAIVASSRDGFYQFGGGGDAFREFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLI 168 (264)
T ss_pred cCCCCCCCcccccccCCCCCCCCChHHHHHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeee
Confidence 221110 0 0101 0111223433 3455666666654 79999999999999999999999999999999999
Q ss_pred CCcc
Q 003878 650 VGVM 653 (789)
Q Consensus 650 ~p~~ 653 (789)
+|-+
T Consensus 169 SPSl 172 (264)
T COG2819 169 SPSL 172 (264)
T ss_pred cchh
Confidence 9843
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=9.6e-05 Score=76.53 Aligned_cols=203 Identities=13% Similarity=0.067 Sum_probs=125.3
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
++..+-.++++|+.+++| .|++.-.-++|++.+|+..- .++.. ++
T Consensus 63 H~~svFavsl~P~~~l~a-----TGGgDD~AflW~~~~ge~~~-eltgH---------------------KD-------- 107 (399)
T KOG0296|consen 63 HTDSVFAVSLHPNNNLVA-----TGGGDDLAFLWDISTGEFAG-ELTGH---------------------KD-------- 107 (399)
T ss_pred cCCceEEEEeCCCCceEE-----ecCCCceEEEEEccCCccee-EecCC---------------------CC--------
Confidence 445677889999888777 56666788999999997432 33333 11
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
.+....||.||..|+-. ...-+|.+|+..++..+-
T Consensus 108 --------------------------SVt~~~FshdgtlLATG-------------------dmsG~v~v~~~stg~~~~ 142 (399)
T KOG0296|consen 108 --------------------------SVTCCSFSHDGTLLATG-------------------DMSGKVLVFKVSTGGEQW 142 (399)
T ss_pred --------------------------ceEEEEEccCceEEEec-------------------CCCccEEEEEcccCceEE
Confidence 25788999999877632 233468888888765443
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce--eEEEe
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ--YEVIA 367 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~s 367 (789)
. +..+-+ .+..+.|.|-+..|++.+.+ ..+|++.+..+. ..++..+.... -..+.
T Consensus 143 ~-~~~e~~---dieWl~WHp~a~illAG~~D-----GsvWmw~ip~~~--------------~~kv~~Gh~~~ct~G~f~ 199 (399)
T KOG0296|consen 143 K-LDQEVE---DIEWLKWHPRAHILLAGSTD-----GSVWMWQIPSQA--------------LCKVMSGHNSPCTCGEFI 199 (399)
T ss_pred E-eecccC---ceEEEEecccccEEEeecCC-----CcEEEEECCCcc--------------eeeEecCCCCCccccccc
Confidence 2 222212 24578999999888877654 348999887621 23344432211 23378
Q ss_pred cCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce
Q 003878 368 NDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 368 ~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
|||+++..... ++.|.++++++++....+. ..+...+.-+.......+++....++ ..++.+..+|+.
T Consensus 200 pdGKr~~tgy~----dgti~~Wn~ktg~p~~~~~-~~e~~~~~~~~~~~~~~~~~~g~~e~--~~~~~~~~sgKV 267 (399)
T KOG0296|consen 200 PDGKRILTGYD----DGTIIVWNPKTGQPLHKIT-QAEGLELPCISLNLAGSTLTKGNSEG--VACGVNNGSGKV 267 (399)
T ss_pred CCCceEEEEec----CceEEEEecCCCceeEEec-ccccCcCCccccccccceeEeccCCc--cEEEEccccceE
Confidence 99999875433 5789999999987333332 22222333444444456666666665 345555555554
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0016 Score=66.61 Aligned_cols=245 Identities=13% Similarity=0.094 Sum_probs=147.6
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..+.++.+|+||..|+-.. +.-+|+++|..+|..+. ++..- .
T Consensus 15 ~~i~sl~fs~~G~~litss-----~dDsl~LYd~~~g~~~~-ti~sk----------------------k---------- 56 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSS-----EDDSLRLYDSLSGKQVK-TINSK----------------------K---------- 56 (311)
T ss_pred CceeEEEecCCCCEEEEec-----CCCeEEEEEcCCCceee-Eeecc----------------------c----------
Confidence 3578899999999998532 23479999999997653 22211 0
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
+-...+.|......+.++... ....|++..+-+. +=+.
T Consensus 57 -----------------------yG~~~~~Fth~~~~~i~sStk-----------------~d~tIryLsl~dN--kylR 94 (311)
T KOG1446|consen 57 -----------------------YGVDLACFTHHSNTVIHSSTK-----------------EDDTIRYLSLHDN--KYLR 94 (311)
T ss_pred -----------------------ccccEEEEecCCceEEEccCC-----------------CCCceEEEEeecC--ceEE
Confidence 013567888888888887531 2345777776543 2233
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCC
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDT 371 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~ 371 (789)
.|.+ |...+.++..||-+...+-.+. ...|++||+...+ -+....+. ......++|.|-
T Consensus 95 YF~G--H~~~V~sL~~sP~~d~FlS~S~-----D~tvrLWDlR~~~-----------cqg~l~~~---~~pi~AfDp~GL 153 (311)
T KOG1446|consen 95 YFPG--HKKRVNSLSVSPKDDTFLSSSL-----DKTVRLWDLRVKK-----------CQGLLNLS---GRPIAAFDPEGL 153 (311)
T ss_pred EcCC--CCceEEEEEecCCCCeEEeccc-----CCeEEeeEecCCC-----------CceEEecC---CCcceeECCCCc
Confidence 4444 3445678899998866543332 3458899988522 11122221 112355888886
Q ss_pred EEEEEECCCCCCceEEEEECCCCC--CeEEeccC-CCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc
Q 003878 372 VFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPE-AERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI 448 (789)
Q Consensus 372 ~l~~~tn~~~~~~~L~~~dl~~~~--~~~~l~~~-~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~ 448 (789)
.+++..+. ..|-++|+..-+ ..+..... ........+.++++++.++....++ .++++|.=+|..+..+..
T Consensus 154 ifA~~~~~----~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s--~~~~lDAf~G~~~~tfs~ 227 (311)
T KOG1446|consen 154 IFALANGS----ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS--FIYLLDAFDGTVKSTFSG 227 (311)
T ss_pred EEEEecCC----CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC--cEEEEEccCCcEeeeEee
Confidence 65543322 267777875421 22333222 3334567788888766666666554 688888767876555544
Q ss_pred C--CeeE-EEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 449 E--IGSV-NAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 449 ~--~~~v-~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
. .+.+ -...++||++.++-. ..-+++..|++++|.
T Consensus 228 ~~~~~~~~~~a~ftPds~Fvl~g----s~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 228 YPNAGNLPLSATFTPDSKFVLSG----SDDGTIHVWNLETGK 265 (311)
T ss_pred ccCCCCcceeEEECCCCcEEEEe----cCCCcEEEEEcCCCc
Confidence 3 2211 234678999866533 345799999999985
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.3e-05 Score=81.08 Aligned_cols=349 Identities=14% Similarity=0.130 Sum_probs=187.5
Q ss_pred cCCCCcccCCCCHHHHHHHHHHHHHHHHHHcCC-----ccHHHHHHHHHhhhcCC-CCCCceE----eCCEEEEEEEcCC
Q 003878 32 VDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNC-----DVRDKLREKITKLFDSP-RYDAPFK----RGNKYFYFHNTGL 101 (789)
Q Consensus 32 ~D~y~wled~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~----~g~~~~~~~~~~~ 101 (789)
.||---|...+ | -.|+.-||-+.++|++.- .-.++-|..|.+.+..+ .+-+|.+ -|.-+=+..-.|.
T Consensus 100 TdpM~~lKQ~~-p--eRy~~lE~ll~R~YFDp~EaY~dssKEkrRa~IAQ~ls~EV~VVppSRLlaLlGQaLKWQqHQGL 176 (508)
T KOG0275|consen 100 TDPMIMLKQIQ-P--ERYIRLENLLNRSYFDPREAYGDSSKEKRRAVIAQALSGEVHVVPPSRLLALLGQALKWQQHQGL 176 (508)
T ss_pred cCceehhhccC-h--HHHHHHHHHhcccccChhhhcCcchHHHHHHHHHHHhcCceEEcChHHHHHHHHHHhhhHhhcCC
Confidence 46655555432 2 356666776666666543 22345555566555554 2333332 2433322222222
Q ss_pred CC---eeEEEEecCC--CCCceEEeccCCCCCC----CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec
Q 003878 102 QP---QSVLYVQDSL--DAKAKVLLDPNTLSDD----GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA 172 (789)
Q Consensus 102 ~~---~~~~~~~~~~--~~~~~~l~d~~~~~~~----~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~ 172 (789)
-| +.-|++-... +.+++ .-|+.|+.. ....+....+||||+||+ +|+-..-|-|||-.+|+...
T Consensus 177 LPPGt~iDLFRGkAA~K~~~Ee--~~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLv-----sgSvDGFiEVWny~~GKlrK 249 (508)
T KOG0275|consen 177 LPPGTTIDLFRGKAAMKDQEEE--RYPTQLARSIKFGQKSHVECARFSPDGQYLV-----SGSVDGFIEVWNYTTGKLRK 249 (508)
T ss_pred CCCCceeeeccchhhhhhhHhh--hchHHhhhheecccccchhheeeCCCCceEe-----eccccceeeeehhccchhhh
Confidence 22 2223432211 11111 112333321 122345678999999998 56666789999999997544
Q ss_pred ccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEE
Q 003878 173 DALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYS 252 (789)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~ 252 (789)
+--.....+ +++.|. ..--+.||-|+.-++-.
T Consensus 250 DLkYQAqd~-----------------------------------fMMmd~-------------aVlci~FSRDsEMlAsG 281 (508)
T KOG0275|consen 250 DLKYQAQDN-----------------------------------FMMMDD-------------AVLCISFSRDSEMLASG 281 (508)
T ss_pred hhhhhhhcc-----------------------------------eeeccc-------------ceEEEeecccHHHhhcc
Confidence 321111000 000000 12345566666555432
Q ss_pred EccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEE
Q 003878 253 RYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCD 332 (789)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d 332 (789)
. ..-+|.+|++.|++.-. -|+.. +...+..+.+|.|+..++-.+.+ ..+.+--
T Consensus 282 s-------------------qDGkIKvWri~tG~ClR--rFdrA-HtkGvt~l~FSrD~SqiLS~sfD-----~tvRiHG 334 (508)
T KOG0275|consen 282 S-------------------QDGKIKVWRIETGQCLR--RFDRA-HTKGVTCLSFSRDNSQILSASFD-----QTVRIHG 334 (508)
T ss_pred C-------------------cCCcEEEEEEecchHHH--Hhhhh-hccCeeEEEEccCcchhhccccc-----ceEEEec
Confidence 1 23357777777765422 23322 23446688999999999755432 3344444
Q ss_pred CCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeee
Q 003878 333 LSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLES 411 (789)
Q Consensus 333 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~ 411 (789)
+++|+ .++....... .....+++||.+++-.+ .++.+-+|+.++.+-..+.-|...+..+.+
T Consensus 335 lKSGK-------------~LKEfrGHsSyvn~a~ft~dG~~iisaS----sDgtvkvW~~KtteC~~Tfk~~~~d~~vns 397 (508)
T KOG0275|consen 335 LKSGK-------------CLKEFRGHSSYVNEATFTDDGHHIISAS----SDGTVKVWHGKTTECLSTFKPLGTDYPVNS 397 (508)
T ss_pred cccch-------------hHHHhcCccccccceEEcCCCCeEEEec----CCccEEEecCcchhhhhhccCCCCccccee
Confidence 55542 1222111110 11245889999877433 346688888887653333444444566777
Q ss_pred EEEecC--CEEEEEEEeCCeEEEEEEECCCCceeeecccC---CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 412 ATAVNL--NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE---IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 412 v~~~~~--~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~---~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
+.+.+. .++++--+.+ .++++++. |+.++..... .|..-....+|.|..++.... -..+|.++..+|
T Consensus 398 v~~~PKnpeh~iVCNrsn---tv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigE----D~vlYCF~~~sG 469 (508)
T KOG0275|consen 398 VILLPKNPEHFIVCNRSN---TVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGE----DGVLYCFSVLSG 469 (508)
T ss_pred EEEcCCCCceEEEEcCCC---eEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEcc----CcEEEEEEeecC
Confidence 777662 4566544433 79999997 8877777654 334434457888998886644 458899998888
Q ss_pred CceE
Q 003878 487 TPEM 490 (789)
Q Consensus 487 ~~~~ 490 (789)
+++.
T Consensus 470 ~LE~ 473 (508)
T KOG0275|consen 470 KLER 473 (508)
T ss_pred ceee
Confidence 7543
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0015 Score=66.01 Aligned_cols=171 Identities=11% Similarity=0.038 Sum_probs=104.1
Q ss_pred ccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEec-CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCcc
Q 003878 274 YHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE-DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPF 352 (789)
Q Consensus 274 ~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 352 (789)
..+.-+|++.+++ .+..|.+. ...+.+++++| |++..+-.. . ....+++|+..+ ...
T Consensus 165 D~TCalWDie~g~--~~~~f~GH--~gDV~slsl~p~~~ntFvSg~---c--D~~aklWD~R~~-------------~c~ 222 (343)
T KOG0286|consen 165 DMTCALWDIETGQ--QTQVFHGH--TGDVMSLSLSPSDGNTFVSGG---C--DKSAKLWDVRSG-------------QCV 222 (343)
T ss_pred CceEEEEEcccce--EEEEecCC--cccEEEEecCCCCCCeEEecc---c--ccceeeeeccCc-------------cee
Confidence 4457788998764 34556543 44567899999 888765433 3 233567788763 122
Q ss_pred Eeeec-cccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEE
Q 003878 353 VKLID-GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYV 431 (789)
Q Consensus 353 ~~l~~-~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~ 431 (789)
+.... +.+..-..|-|+|..|.- . ..+...-.+|+....+....-++.....+.+++++..++|++....+. .
T Consensus 223 qtF~ghesDINsv~ffP~G~afat--G--SDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~--~ 296 (343)
T KOG0286|consen 223 QTFEGHESDINSVRFFPSGDAFAT--G--SDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDF--T 296 (343)
T ss_pred EeecccccccceEEEccCCCeeee--c--CCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCC--c
Confidence 22221 122222336789987663 2 223444455666544222222333334567888887788888876665 6
Q ss_pred EEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCC
Q 003878 432 LQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLI 474 (789)
Q Consensus 432 L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~ 474 (789)
..+||.=.|+....|..+...|+.+..+|||- .+...|+..
T Consensus 297 c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~--av~TgSWDs 337 (343)
T KOG0286|consen 297 CNVWDTLKGERVGVLAGHENRVSCLGVSPDGM--AVATGSWDS 337 (343)
T ss_pred eeEeeccccceEEEeeccCCeeEEEEECCCCc--EEEecchhH
Confidence 78888654777677777777888899999985 455566654
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-05 Score=99.08 Aligned_cols=106 Identities=12% Similarity=0.099 Sum_probs=64.0
Q ss_pred CccEEEEEcCCCCccCCCCCCH--HHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHH----HHHHHHHH
Q 003878 537 SHPCLLYGYGGFNISVTPSFSV--SRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDF----ISASEYLI 610 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~--~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~----~~~~~~L~ 610 (789)
..|.||++||.......+...+ ....+|.++||.|+++|+. .... . .. . ...++.|. .++++.+.
T Consensus 66 ~~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d~G-~~~~--~--~~---~-~~~~l~~~i~~l~~~l~~v~ 136 (994)
T PRK07868 66 VGPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVIDFG-SPDK--V--EG---G-MERNLADHVVALSEAIDTVK 136 (994)
T ss_pred CCCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEcCC-CCCh--h--Hc---C-ccCCHHHHHHHHHHHHHHHH
Confidence 4578999999766554444332 1245565589999999962 2111 0 00 0 12333333 33333333
Q ss_pred HcCCCCCCcEEEEeeChHHHHHHHHHHhC-CCceeEEEecCCccc
Q 003878 611 SAGYTQSRKLCIEGGSNGGLLVGACINQR-PDLFGCALAHVGVMD 654 (789)
Q Consensus 611 ~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-pd~f~a~v~~~p~~d 654 (789)
+.. .+++.++|+|+||.++..++..+ |++++.+|+.+..+|
T Consensus 137 ~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d 178 (994)
T PRK07868 137 DVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVD 178 (994)
T ss_pred Hhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccc
Confidence 332 24799999999999998877644 568888877555444
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0009 Score=73.24 Aligned_cols=218 Identities=13% Similarity=0.136 Sum_probs=112.9
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE--EEe----cCC----CCeeEEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL--CWK----DPE----HPKYIFSGHV 307 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~--~~~----~~~----~~~~~~~~~~ 307 (789)
..++.+||++.|+...+.. ..+..+.+.....-... ++. .++ .......+.+
T Consensus 90 ~~i~~~~~g~~l~vany~~------------------g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~ 151 (345)
T PF10282_consen 90 CHIAVDPDGRFLYVANYGG------------------GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF 151 (345)
T ss_dssp EEEEECTTSSEEEEEETTT------------------TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE
T ss_pred EEEEEecCCCEEEEEEccC------------------CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEE
Confidence 4678899999998875532 23555666543211111 111 111 1122346789
Q ss_pred ecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEE
Q 003878 308 TEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKII 387 (789)
Q Consensus 308 SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~ 387 (789)
+|||+++++.. .+ ...|++++++.....+. ......+..+...+...++|||+.+|+..... ..|.
T Consensus 152 ~pdg~~v~v~d-lG---~D~v~~~~~~~~~~~l~-------~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s---~~v~ 217 (345)
T PF10282_consen 152 SPDGRFVYVPD-LG---ADRVYVYDIDDDTGKLT-------PVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS---NTVS 217 (345)
T ss_dssp -TTSSEEEEEE-TT---TTEEEEEEE-TTS-TEE-------EEEEEECSTTSSEEEEEE-TTSSEEEEEETTT---TEEE
T ss_pred CCCCCEEEEEe-cC---CCEEEEEEEeCCCceEE-------EeeccccccCCCCcEEEEcCCcCEEEEecCCC---CcEE
Confidence 99999997653 22 35688888765310010 00011222344445667999999999876543 4555
Q ss_pred EEECC--CCC--CeE--EeccCCC--CceeeeEEEecCCE-EEEEEEeCCeEEEEEEEC--CCCceeeec---ccCCeeE
Q 003878 388 RVDLK--EPN--DWF--EVIPEAE--RDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDL--KNGSLLHQL---PIEIGSV 453 (789)
Q Consensus 388 ~~dl~--~~~--~~~--~l~~~~~--~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl--~tG~~~~~l---~~~~~~v 453 (789)
.+++. ++. ..+ ..+|... .....++.++++++ ||++-+.. ..|.++++ ++|+. +.+ ......-
T Consensus 218 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~--~sI~vf~~d~~~g~l-~~~~~~~~~G~~P 294 (345)
T PF10282_consen 218 VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS--NSISVFDLDPATGTL-TLVQTVPTGGKFP 294 (345)
T ss_dssp EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT--TEEEEEEECTTTTTE-EEEEEEEESSSSE
T ss_pred EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC--CEEEEEEEecCCCce-EEEEEEeCCCCCc
Confidence 55554 332 111 1222221 11356788887654 55544433 45666666 44543 332 2111124
Q ss_pred EEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEe
Q 003878 454 NAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIF 493 (789)
Q Consensus 454 ~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l 493 (789)
..+.++++++.++++-.. ..--.+|.+|.++|. ++..
T Consensus 295 r~~~~s~~g~~l~Va~~~-s~~v~vf~~d~~tG~--l~~~ 331 (345)
T PF10282_consen 295 RHFAFSPDGRYLYVANQD-SNTVSVFDIDPDTGK--LTPV 331 (345)
T ss_dssp EEEEE-TTSSEEEEEETT-TTEEEEEEEETTTTE--EEEE
T ss_pred cEEEEeCCCCEEEEEecC-CCeEEEEEEeCCCCc--EEEe
Confidence 567789999988876533 334566777878884 4443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00019 Score=76.43 Aligned_cols=225 Identities=8% Similarity=0.054 Sum_probs=140.4
Q ss_pred EEEeeeccccceeeeeeec------------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEEC
Q 003878 215 FYLFSLVKSTIYSFWSVVS------------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFL 282 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~------------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 282 (789)
.+|...+-+|+.+||+++. .+.....+++|+|...+++ +++..-+|.+++
T Consensus 226 plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~------------------s~rrky~ysyDl 287 (514)
T KOG2055|consen 226 PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFT------------------SGRRKYLYSYDL 287 (514)
T ss_pred ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEe------------------cccceEEEEeec
Confidence 5688999999999999988 4445678999999955555 234445888898
Q ss_pred CCCCCCcEE-EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc
Q 003878 283 GTKQSEDIL-CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA 361 (789)
Q Consensus 283 g~~~~~~~~-~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (789)
.+.....+- ++..+ ...+..+.+|||+++|++... ...|+++...++. ...-.++ .+ ..
T Consensus 288 e~ak~~k~~~~~g~e--~~~~e~FeVShd~~fia~~G~-----~G~I~lLhakT~e-----------li~s~Ki-eG-~v 347 (514)
T KOG2055|consen 288 ETAKVTKLKPPYGVE--EKSMERFEVSHDSNFIAIAGN-----NGHIHLLHAKTKE-----------LITSFKI-EG-VV 347 (514)
T ss_pred cccccccccCCCCcc--cchhheeEecCCCCeEEEccc-----CceEEeehhhhhh-----------hhheeee-cc-EE
Confidence 776543322 12221 234567889999999998764 4568888877642 0000011 11 11
Q ss_pred eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCC--
Q 003878 362 QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN-- 439 (789)
Q Consensus 362 ~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~t-- 439 (789)
.-..|+.||+.|+... ..+.|+.+|+.........+-++ ...-.++..+.++.+++.+++.|.-.|| |.++
T Consensus 348 ~~~~fsSdsk~l~~~~----~~GeV~v~nl~~~~~~~rf~D~G-~v~gts~~~S~ng~ylA~GS~~GiVNIY--d~~s~~ 420 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASG----GTGEVYVWNLRQNSCLHRFVDDG-SVHGTSLCISLNGSYLATGSDSGIVNIY--DGNSCF 420 (514)
T ss_pred eeEEEecCCcEEEEEc----CCceEEEEecCCcceEEEEeecC-ccceeeeeecCCCceEEeccCcceEEEe--ccchhh
Confidence 1234788998888643 34689999998875223333222 2333456666666788888888854444 4331
Q ss_pred -Cceeeeccc---CCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 440 -GSLLHQLPI---EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 440 -G~~~~~l~~---~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
+..++.+.. -...|+.+.+++|+..+++ .|-..+..+.+..+.+.
T Consensus 421 ~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAi--aS~~~knalrLVHvPS~ 469 (514)
T KOG2055|consen 421 ASTNPKPIKTVDNLTTAITSLQFNHDAQILAI--ASRVKKNALRLVHVPSC 469 (514)
T ss_pred ccCCCCchhhhhhhheeeeeeeeCcchhhhhh--hhhccccceEEEeccce
Confidence 111133321 1446778899999886665 35567788888877655
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.7e-05 Score=75.72 Aligned_cols=128 Identities=19% Similarity=0.273 Sum_probs=80.3
Q ss_pred EEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec-----ccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 137 VSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-----DALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 137 ~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
.++||+|+|||-.. ++.+.|.|.+|=+..+ +.+..+ .|. +
T Consensus 14 c~fSp~g~yiAs~~------~yrlviRd~~tlq~~qlf~cldki~yi---------------------------eW~--a 58 (447)
T KOG4497|consen 14 CSFSPCGNYIASLS------RYRLVIRDSETLQLHQLFLCLDKIVYI---------------------------EWK--A 58 (447)
T ss_pred eeECCCCCeeeeee------eeEEEEeccchhhHHHHHHHHHHhhhe---------------------------eee--c
Confidence 46999999999655 4689999988865432 111111 000 1
Q ss_pred eeeEEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHF 281 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (789)
-+-.++-..-.++.-|+|.+.- +-...+..|||||+.|.-+. ...-+|-+|.
T Consensus 59 ds~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~ts------------------eF~lriTVWS 120 (447)
T KOG4497|consen 59 DSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTS------------------EFDLRITVWS 120 (447)
T ss_pred cceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeee------------------cceeEEEEEE
Confidence 1123344445677789998765 22236789999999998762 3345677788
Q ss_pred CCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCC
Q 003878 282 LGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENC 322 (789)
Q Consensus 282 lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 322 (789)
+-+... .....+.+. .-+.++.|||++.++.+.+.+
T Consensus 121 L~t~~~---~~~~~pK~~--~kg~~f~~dg~f~ai~sRrDC 156 (447)
T KOG4497|consen 121 LNTQKG---YLLPHPKTN--VKGYAFHPDGQFCAILSRRDC 156 (447)
T ss_pred ecccee---EEecccccC--ceeEEECCCCceeeeeecccH
Confidence 776432 222333222 246889999999999876543
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00017 Score=74.65 Aligned_cols=198 Identities=16% Similarity=0.136 Sum_probs=123.3
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...+.|+||++.|++... ...++++++.+... ...... +...+..+.|+|++++++.
T Consensus 12 i~~~~~~~~~~~l~~~~~-------------------~g~i~i~~~~~~~~--~~~~~~--~~~~i~~~~~~~~~~~l~~ 68 (289)
T cd00200 12 VTCVAFSPDGKLLATGSG-------------------DGTIKVWDLETGEL--LRTLKG--HTGPVRDVAASADGTYLAS 68 (289)
T ss_pred EEEEEEcCCCCEEEEeec-------------------CcEEEEEEeeCCCc--EEEEec--CCcceeEEEECCCCCEEEE
Confidence 578999999998887643 23577888765432 122222 2223457899999988877
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
... ...++++++.++. ....+.... ......|+++++.++ .+. .++.|..+++.+++
T Consensus 69 ~~~-----~~~i~i~~~~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~~~-~~~---~~~~i~~~~~~~~~ 126 (289)
T cd00200 69 GSS-----DKTIRLWDLETGE-------------CVRTLTGHTSYVSSVAFSPDGRILS-SSS---RDKTIKVWDVETGK 126 (289)
T ss_pred EcC-----CCeEEEEEcCccc-------------ceEEEeccCCcEEEEEEcCCCCEEE-Eec---CCCeEEEEECCCcE
Confidence 653 3558888987631 111221111 112234777755444 333 24678899987654
Q ss_pred CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCC
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIP 475 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P 475 (789)
....+..+ ...+..+.+.+++.+++....++ .|++||+.+++....+..+...+..+.++++++.+++... .
T Consensus 127 ~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~ 198 (289)
T cd00200 127 CLTTLRGH--TDWVNSVAFSPDGTFVASSSQDG--TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----D 198 (289)
T ss_pred EEEEeccC--CCcEEEEEEcCcCCEEEEEcCCC--cEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----C
Confidence 22233222 24577888888556666665455 6889999877665555544556777888898877766543 5
Q ss_pred cEEEEEECCCCC
Q 003878 476 GIVYQCNLKTET 487 (789)
Q Consensus 476 ~~ly~~dl~tg~ 487 (789)
+.+..||+.+++
T Consensus 199 ~~i~i~d~~~~~ 210 (289)
T cd00200 199 GTIKLWDLSTGK 210 (289)
T ss_pred CcEEEEECCCCc
Confidence 688999987764
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0021 Score=67.25 Aligned_cols=173 Identities=12% Similarity=0.136 Sum_probs=97.2
Q ss_pred EEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCC
Q 003878 304 SGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPK 383 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~ 383 (789)
...++|||++|+...- + ..+|++++++.|+ +. ......+..+.+.+.-.|.|+|+..|+++..+ ..
T Consensus 149 ~a~~tP~~~~l~v~DL-G---~Dri~~y~~~dg~--L~-------~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~-st 214 (346)
T COG2706 149 SANFTPDGRYLVVPDL-G---TDRIFLYDLDDGK--LT-------PADPAEVKPGAGPRHIVFHPNGKYAYLVNELN-ST 214 (346)
T ss_pred eeeeCCCCCEEEEeec-C---CceEEEEEcccCc--cc-------cccccccCCCCCcceEEEcCCCcEEEEEeccC-CE
Confidence 4678999999986542 2 4668888888653 10 01111223455556677999999988887764 23
Q ss_pred ceEEEEECCCCC--CeEEe--ccCCC--CceeeeEEEecCCEEEEEEEeCC-eEEEEEEECCCCceeeeccc-C-Cee-E
Q 003878 384 YKIIRVDLKEPN--DWFEV--IPEAE--RDVLESATAVNLNQMIVSYLSDV-KYVLQIRDLKNGSLLHQLPI-E-IGS-V 453 (789)
Q Consensus 384 ~~L~~~dl~~~~--~~~~l--~~~~~--~~~i~~v~~~~~~~lv~~~~~~g-~~~L~~~dl~tG~~~~~l~~-~-~~~-v 453 (789)
-.++.++-..++ ..+.+ +|.+- .....++.+++++++++...+.. .-.++.++..+|+. +.+.. + .+. -
T Consensus 215 V~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L-~~~~~~~teg~~P 293 (346)
T COG2706 215 VDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKL-ELVGITPTEGQFP 293 (346)
T ss_pred EEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEE-EEEEEeccCCcCC
Confidence 334444433343 12221 23221 13346688888666554444332 22445556665543 32221 1 222 2
Q ss_pred EEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEee
Q 003878 454 NAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFR 494 (789)
Q Consensus 454 ~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~ 494 (789)
+.+.++++++.|+.+-+.-. --.+|+.|.+||. ++++.
T Consensus 294 R~F~i~~~g~~Liaa~q~sd-~i~vf~~d~~TG~--L~~~~ 331 (346)
T COG2706 294 RDFNINPSGRFLIAANQKSD-NITVFERDKETGR--LTLLG 331 (346)
T ss_pred ccceeCCCCCEEEEEccCCC-cEEEEEEcCCCce--EEecc
Confidence 45667788887776654433 3788999999994 55544
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00091 Score=76.25 Aligned_cols=205 Identities=10% Similarity=0.031 Sum_probs=114.7
Q ss_pred cceEEEEe-CCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC-----CcEEEEecCCCCeeEEEEEEecC
Q 003878 237 FSSIAWTH-DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS-----EDILCWKDPEHPKYIFSGHVTED 310 (789)
Q Consensus 237 ~~~~~wsp-Dg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~-----~~~~~~~~~~~~~~~~~~~~SpD 310 (789)
+..++|+| |++.|+.... ...|.+|++.+... +.+..+.. +...+..+.|+|+
T Consensus 78 V~~v~fsP~d~~~LaSgS~-------------------DgtIkIWdi~~~~~~~~~~~~l~~L~g--H~~~V~~l~f~P~ 136 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASE-------------------DGTIMGWGIPEEGLTQNISDPIVHLQG--HTKKVGIVSFHPS 136 (493)
T ss_pred EEEEEEcCCCCCEEEEEeC-------------------CCEEEEEecCCCccccccCcceEEecC--CCCcEEEEEeCcC
Confidence 57899999 8877765433 23588888865421 12223332 3344667899999
Q ss_pred CcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCCEEEEEECCCCCCceEEEE
Q 003878 311 GQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRV 389 (789)
Q Consensus 311 G~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~~l~~~tn~~~~~~~L~~~ 389 (789)
+..+++++.. ...|.++|+.++. ....+....+... ..|+++|+.|+..+ .+..|..+
T Consensus 137 ~~~iLaSgs~----DgtVrIWDl~tg~-------------~~~~l~~h~~~V~sla~spdG~lLatgs----~Dg~IrIw 195 (493)
T PTZ00421 137 AMNVLASAGA----DMVVNVWDVERGK-------------AVEVIKCHSDQITSLEWNLDGSLLCTTS----KDKKLNII 195 (493)
T ss_pred CCCEEEEEeC----CCEEEEEECCCCe-------------EEEEEcCCCCceEEEEEECCCCEEEEec----CCCEEEEE
Confidence 7644444432 3558899998742 1222222222222 34899998766432 34678899
Q ss_pred ECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEE-e-CCeEEEEEEECCCCce-eeecccC-CeeEEEeecccCCcEE
Q 003878 390 DLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL-S-DVKYVLQIRDLKNGSL-LHQLPIE-IGSVNAISARREDSVV 465 (789)
Q Consensus 390 dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~-~-~g~~~L~~~dl~tG~~-~~~l~~~-~~~v~~~s~s~d~~~l 465 (789)
|+.+++....+..+.. .....+.|.+++..+++.. . .....|.+||+.+... ...+... ...+..+.++++++.+
T Consensus 196 D~rsg~~v~tl~~H~~-~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L 274 (493)
T PTZ00421 196 DPRDGTIVSSVEAHAS-AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLL 274 (493)
T ss_pred ECCCCcEEEEEecCCC-CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEE
Confidence 9988763344444432 2233455665433333322 1 1224799999975432 2222222 2223344567888866
Q ss_pred EEEEcCCCCCcEEEEEECCCCC
Q 003878 466 FISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 466 ~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
++... .-..++.||+.+++
T Consensus 275 ~lggk---gDg~Iriwdl~~~~ 293 (493)
T PTZ00421 275 YIGSK---GEGNIRCFELMNER 293 (493)
T ss_pred EEEEe---CCCeEEEEEeeCCc
Confidence 65432 24578888888774
|
|
| >KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-05 Score=82.68 Aligned_cols=227 Identities=14% Similarity=0.074 Sum_probs=123.5
Q ss_pred eEEEEEEEe-cCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcch
Q 003878 520 TKIPMFIVS-KKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNC 598 (789)
Q Consensus 520 ~~i~~~l~~-p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~ 598 (789)
+++..-+++ ..+ -.+.|.++.+||-.|+..+ |....-.+-...|--+..+|.|-.|..... ........
T Consensus 36 ~~l~y~~~~~~~~---~~~~Pp~i~lHGl~GS~~N--w~sv~k~Ls~~l~~~v~~vd~RnHG~Sp~~-----~~h~~~~m 105 (315)
T KOG2382|consen 36 VRLAYDSVYSSEN---LERAPPAIILHGLLGSKEN--WRSVAKNLSRKLGRDVYAVDVRNHGSSPKI-----TVHNYEAM 105 (315)
T ss_pred cccceeeeecccc---cCCCCceEEecccccCCCC--HHHHHHHhcccccCceEEEecccCCCCccc-----cccCHHHH
Confidence 556655553 333 3678999999999887643 333223444456678999999987754321 11222233
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeeChHH-HHHHHHHHhCCCceeEEEe-c-CCc-ccc--------cccc---ccc-
Q 003878 599 FDDFISASEYLISAGYTQSRKLCIEGGSNGG-LLVGACINQRPDLFGCALA-H-VGV-MDM--------LRYH---KFT- 662 (789)
Q Consensus 599 ~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG-~l~~~~~~~~pd~f~a~v~-~-~p~-~d~--------~~~~---~~~- 662 (789)
-+|+...++..... +--.++.+.|||||| -++++.....|++..-+|+ . .|- +.- ...+ ...
T Consensus 106 a~dv~~Fi~~v~~~--~~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~ 183 (315)
T KOG2382|consen 106 AEDVKLFIDGVGGS--TRLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSI 183 (315)
T ss_pred HHHHHHHHHHcccc--cccCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccc
Confidence 34444444444322 234589999999999 6666666677886544443 2 331 100 0000 000
Q ss_pred ---CCcc-----------------chh------------hc-CCC-CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCe
Q 003878 663 ---IGHA-----------------WVS------------DF-GCS-EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPS 708 (789)
Q Consensus 663 ---~~~~-----------------~~~------------e~-g~p-~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp 708 (789)
.+.. |.. .| ++. ...+.+..+...++-..+... +...|
T Consensus 184 ~~~~~rke~~~~l~~~~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~--------~~~~p 255 (315)
T KOG2382|consen 184 GVSRGRKEALKSLIEVGFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDG--------PYTGP 255 (315)
T ss_pred cccccHHHHHHHHHHHhcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhccccccccc--------ccccc
Confidence 0000 000 01 111 111222222222222222111 23579
Q ss_pred EEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHH
Q 003878 709 TLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 709 ~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 782 (789)
+|+++|.++..|+..+-..+.... ..++++..+++||+......+ +....+..|+...
T Consensus 256 vlfi~g~~S~fv~~~~~~~~~~~f--------------p~~e~~~ld~aGHwVh~E~P~--~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 256 VLFIKGLQSKFVPDEHYPRMEKIF--------------PNVEVHELDEAGHWVHLEKPE--EFIESISEFLEEP 313 (315)
T ss_pred eeEEecCCCCCcChhHHHHHHHhc--------------cchheeecccCCceeecCCHH--HHHHHHHHHhccc
Confidence 999999999999977644433322 236899999999998766554 5666677777543
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0012 Score=73.74 Aligned_cols=203 Identities=11% Similarity=0.129 Sum_probs=111.7
Q ss_pred eEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec----cccceeEEEecCCCEEEEE
Q 003878 301 YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID----GFDAQYEVIANDDTVFTFL 376 (789)
Q Consensus 301 ~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~s~dG~~l~~~ 376 (789)
.+...+.||||++|++.+-. ...||.+..+. . .....+.. -.++..-.++-|+..+++.
T Consensus 384 nIs~~aiSPdg~~Ia~st~~----~~~iy~L~~~~-~------------vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~ 446 (691)
T KOG2048|consen 384 NISCAAISPDGNLIAISTVS----RTKIYRLQPDP-N------------VKVINVDDVPLALLDASAISFTIDKNKLFLV 446 (691)
T ss_pred ceeeeccCCCCCEEEEeecc----ceEEEEeccCc-c------------eeEEEeccchhhhccceeeEEEecCceEEEE
Confidence 35567899999999998743 34566665432 1 00111110 0111223367788777777
Q ss_pred ECCCCCCceEEEEECCCCC--CeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecc-cCCee
Q 003878 377 TNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLP-IEIGS 452 (789)
Q Consensus 377 tn~~~~~~~L~~~dl~~~~--~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~-~~~~~ 452 (789)
+. ..+.|..++++++. ....+.+......+..+..+++ ++++++.. ...|++|++++++. +.+. .....
T Consensus 447 s~---~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t---~g~I~v~nl~~~~~-~~l~~rln~~ 519 (691)
T KOG2048|consen 447 SK---NIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIST---RGQIFVYNLETLES-HLLKVRLNID 519 (691)
T ss_pred ec---ccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEec---cceEEEEEccccee-ecchhccCcc
Confidence 63 23678888887764 2333334333345777777774 55665553 34799999997665 4443 22344
Q ss_pred EEEeecc-cCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeeeccCCCCCCCCCcEEEEEEecCCCceEEEEEEEecCC
Q 003878 453 VNAISAR-REDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKN 531 (789)
Q Consensus 453 v~~~s~s-~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~ 531 (789)
++.+++. ++-+.+.+.+++ .++|.||+.... .+.+... +...+. ..+....+ .+++..+-|
T Consensus 520 vTa~~~~~~~~~~lvvats~----nQv~efdi~~~~--l~~ws~~-----nt~nlp---k~~~~l~~--~~~gisfd~-- 581 (691)
T KOG2048|consen 520 VTAAAFSPFVRNRLVVATSN----NQVFEFDIEARN--LTRWSKN-----NTRNLP---KEPKTLIP--GIPGISFDP-- 581 (691)
T ss_pred eeeeeccccccCcEEEEecC----CeEEEEecchhh--hhhhhhc-----cccccc---cChhhcCC--CCceEEeCC--
Confidence 5555666 345667766544 589999985442 2222111 111111 11222232 355555543
Q ss_pred CCCCCCccEEEEEcCCCCc
Q 003878 532 IKLDGSHPCLLYGYGGFNI 550 (789)
Q Consensus 532 ~~~~~~~P~ll~~hGg~~~ 550 (789)
++|..+.+|++...
T Consensus 582 -----~n~s~~~~~~a~w~ 595 (691)
T KOG2048|consen 582 -----KNSSRFIVYDAHWS 595 (691)
T ss_pred -----CCccEEEEEcCcEE
Confidence 46788888987654
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.5e-05 Score=87.65 Aligned_cols=172 Identities=12% Similarity=0.097 Sum_probs=99.9
Q ss_pred EEEeEEeCCCCcEEEEEEec---CCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 133 ALIKVSVSEDAKYLAYALSY---SGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~---~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
.+.++++||||+++||.... .++...+||+.+..+ ...+. ....
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~l-t~g~------------------------------- 397 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQV-LEGH------------------------------- 397 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceee-ecCC-------------------------------
Confidence 46789999999999999852 123467999999733 22221 1111
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
....+.|||||+.|+|.....+- ..........+++...+..+....
T Consensus 398 --------------------------~~t~PsWspDG~~lw~v~dg~~~-------~~v~~~~~~gql~~~~vd~ge~~~ 444 (591)
T PRK13616 398 --------------------------SLTRPSWSLDADAVWVVVDGNTV-------VRVIRDPATGQLARTPVDASAVAS 444 (591)
T ss_pred --------------------------CCCCceECCCCCceEEEecCcce-------EEEeccCCCceEEEEeccCchhhh
Confidence 24789999999999998643110 000001123467777775543221
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEE---EECCCCCCCcccccccCCCCccEeeeccccc--eeE
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYY---CDLSALPEGLEGFKKRDGLLPFVKLIDGFDA--QYE 364 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~---~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--~~~ 364 (789)
.. +..+.++.|||||++|++... .+||+ ....+|...+ .....+...... ...
T Consensus 445 ----~~---~g~Issl~wSpDG~RiA~i~~------g~v~Va~Vvr~~~G~~~l---------~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 445 ----RV---PGPISELQLSRDGVRAAMIIG------GKVYLAVVEQTEDGQYAL---------TNPREVGPGLGDTAVSL 502 (591)
T ss_pred ----cc---CCCcCeEEECCCCCEEEEEEC------CEEEEEEEEeCCCCceee---------cccEEeecccCCccccc
Confidence 11 112567899999999999872 35777 4434432110 112223332221 223
Q ss_pred EEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 365 VIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
.|..++. |++.+.. .+..++.+++++..
T Consensus 503 ~W~~~~~-L~V~~~~--~~~~v~~v~vDG~~ 530 (591)
T PRK13616 503 DWRTGDS-LVVGRSD--PEHPVWYVNLDGSN 530 (591)
T ss_pred eEecCCE-EEEEecC--CCCceEEEecCCcc
Confidence 4887665 6666553 45679999998764
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.6e-05 Score=88.01 Aligned_cols=195 Identities=11% Similarity=0.043 Sum_probs=122.0
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.|-+.++|||-++|+ +.+|..++++|.+.|...+..= .
T Consensus 453 PVyg~sFsPd~rfLl-----ScSED~svRLWsl~t~s~~V~y-~------------------------------------ 490 (707)
T KOG0263|consen 453 PVYGCSFSPDRRFLL-----SCSEDSSVRLWSLDTWSCLVIY-K------------------------------------ 490 (707)
T ss_pred ceeeeeeccccccee-----eccCCcceeeeecccceeEEEe-c------------------------------------
Confidence 467888999999997 6777889999999987543210 0
Q ss_pred eeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 292 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~ 292 (789)
...+ .+..+.|+|-|-+|+-... ..+..+|.... .....+
T Consensus 491 ----------GH~~---------PVwdV~F~P~GyYFatas~-------------------D~tArLWs~d~--~~PlRi 530 (707)
T KOG0263|consen 491 ----------GHLA---------PVWDVQFAPRGYYFATASH-------------------DQTARLWSTDH--NKPLRI 530 (707)
T ss_pred ----------CCCc---------ceeeEEecCCceEEEecCC-------------------Cceeeeeeccc--CCchhh
Confidence 0111 2345668887644442211 11223333222 122334
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee--EEEecCC
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY--EVIANDD 370 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~s~dG 370 (789)
+..+-.+ +.-+.+.|++.|++-.+. ...+.+||+.+|. .++++.+..... ..+||+|
T Consensus 531 faghlsD--V~cv~FHPNs~Y~aTGSs-----D~tVRlWDv~~G~--------------~VRiF~GH~~~V~al~~Sp~G 589 (707)
T KOG0263|consen 531 FAGHLSD--VDCVSFHPNSNYVATGSS-----DRTVRLWDVSTGN--------------SVRIFTGHKGPVTALAFSPCG 589 (707)
T ss_pred hcccccc--cceEEECCcccccccCCC-----CceEEEEEcCCCc--------------EEEEecCCCCceEEEEEcCCC
Confidence 4443322 234789999999985533 3457888988752 234444322222 3489999
Q ss_pred CEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC
Q 003878 371 TVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 371 ~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~ 438 (789)
++|.- ++..+.|..||+.++.....+..|. ..+.+++++.++.++++...|. .|.+||+.
T Consensus 590 r~LaS----g~ed~~I~iWDl~~~~~v~~l~~Ht--~ti~SlsFS~dg~vLasgg~Dn--sV~lWD~~ 649 (707)
T KOG0263|consen 590 RYLAS----GDEDGLIKIWDLANGSLVKQLKGHT--GTIYSLSFSRDGNVLASGGADN--SVRLWDLT 649 (707)
T ss_pred ceEee----cccCCcEEEEEcCCCcchhhhhccc--CceeEEEEecCCCEEEecCCCC--eEEEEEch
Confidence 98772 3456889999999887455566663 6788999998777777666554 78889985
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0004 Score=78.14 Aligned_cols=270 Identities=18% Similarity=0.168 Sum_probs=156.3
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+...+.++.+|.|...++ +|+ ...|.+|+..|.+.+. +++.. | -.-...+|..
T Consensus 372 HR~dVRsl~vS~d~~~~~-----Sga-~~SikiWn~~t~kciR-Ti~~~---y----------~l~~~Fvpgd------- 424 (888)
T KOG0306|consen 372 HRSDVRSLCVSSDSILLA-----SGA-GESIKIWNRDTLKCIR-TITCG---Y----------ILASKFVPGD------- 424 (888)
T ss_pred chhheeEEEeecCceeee-----ecC-CCcEEEEEccCcceeE-Eeccc---c----------EEEEEecCCC-------
Confidence 346688999999987776 221 1368899999886543 22211 0 0011223333
Q ss_pred cceeeEEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEE
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYY 279 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (789)
++..++-++|-.|++.+.. .-...+++-+||+++++-...+. .|..
T Consensus 425 -----~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDk-------------------tVkf 480 (888)
T KOG0306|consen 425 -----RYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADK-------------------TVKF 480 (888)
T ss_pred -----ceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCc-------------------EEEE
Confidence 3556667888777777655 11135677889999998665443 2222
Q ss_pred EEC-------CCCCC----CcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCC
Q 003878 280 HFL-------GTKQS----EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 348 (789)
Q Consensus 280 ~~l-------g~~~~----~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~ 348 (789)
|+. |+... +...+.+.++ .+..+.+||||++|++..-+. +-.||.+|.=.
T Consensus 481 Wdf~l~~~~~gt~~k~lsl~~~rtLel~d---dvL~v~~Spdgk~LaVsLLdn---TVkVyflDtlK------------- 541 (888)
T KOG0306|consen 481 WDFKLVVSVPGTQKKVLSLKHTRTLELED---DVLCVSVSPDGKLLAVSLLDN---TVKVYFLDTLK------------- 541 (888)
T ss_pred EeEEEEeccCcccceeeeeccceEEeccc---cEEEEEEcCCCcEEEEEeccC---eEEEEEeccee-------------
Confidence 221 11100 0111223333 256789999999999887543 35566655321
Q ss_pred CCccEeeeccccce-eEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeC
Q 003878 349 LLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSD 427 (789)
Q Consensus 349 ~~~~~~l~~~~~~~-~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~ 427 (789)
-...+...--+. --.+|||++.++ +...+ .+.+++-+|..... +-++.|. ..+..+.+.|..+++++...+
T Consensus 542 --FflsLYGHkLPV~smDIS~DSkliv-TgSAD-KnVKiWGLdFGDCH--KS~fAHd--DSvm~V~F~P~~~~FFt~gKD 613 (888)
T KOG0306|consen 542 --FFLSLYGHKLPVLSMDISPDSKLIV-TGSAD-KNVKIWGLDFGDCH--KSFFAHD--DSVMSVQFLPKTHLFFTCGKD 613 (888)
T ss_pred --eeeeecccccceeEEeccCCcCeEE-eccCC-CceEEeccccchhh--hhhhccc--CceeEEEEcccceeEEEecCc
Confidence 022222211111 123789887654 33332 45667666664433 5667776 456778888878899999888
Q ss_pred CeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEEC
Q 003878 428 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 428 g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl 483 (789)
+ .+..||-+.=+.++.+..+...+..++.+|+|+.++ +. ..-..+..|..
T Consensus 614 ~--kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vv-s~---shD~sIRlwE~ 663 (888)
T KOG0306|consen 614 G--KVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVV-SS---SHDKSIRLWER 663 (888)
T ss_pred c--eEEeechhhhhhheeeccchheeeeeEEcCCCCeEE-ec---cCCceeEeeec
Confidence 7 788898553334455555566777788889988544 32 23345666654
|
|
| >KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.8e-05 Score=80.61 Aligned_cols=112 Identities=22% Similarity=0.236 Sum_probs=69.1
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCC--------------CChhHHhcccc--cCC---
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGE--------------YGEEWHKGGAL--AKK--- 595 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~--------------~g~~~~~~~~~--~~~--- 595 (789)
++++|++|+.||-.++ ...|+..+..+.. +||+|+++..|-.+. +-.+|..--.. +.+
T Consensus 115 ~~k~PvvvFSHGLggs--Rt~YSa~c~~LAS-hG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~ 191 (399)
T KOG3847|consen 115 NDKYPVVVFSHGLGGS--RTLYSAYCTSLAS-HGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFH 191 (399)
T ss_pred CCCccEEEEecccccc--hhhHHHHhhhHhh-CceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEE
Confidence 6899999999997654 3345555555554 999999999885432 22233322111 111
Q ss_pred -cch-----HHHHHHHHHHHHH---------------------cCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEe
Q 003878 596 -QNC-----FDDFISASEYLIS---------------------AGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA 648 (789)
Q Consensus 596 -~~~-----~~D~~~~~~~L~~---------------------~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~ 648 (789)
+|. ...+..|++-|.+ ++-+|.++++|+|||.||..+.+....+ ..|+++|+
T Consensus 192 irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~-t~FrcaI~ 270 (399)
T KOG3847|consen 192 IRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSH-TDFRCAIA 270 (399)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccc-cceeeeee
Confidence 111 1223333333221 1335778999999999999998888875 46898886
Q ss_pred cC
Q 003878 649 HV 650 (789)
Q Consensus 649 ~~ 650 (789)
.-
T Consensus 271 lD 272 (399)
T KOG3847|consen 271 LD 272 (399)
T ss_pred ee
Confidence 43
|
|
| >PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.1e-06 Score=82.31 Aligned_cols=138 Identities=19% Similarity=0.172 Sum_probs=96.8
Q ss_pred CCCCCCcEEEEEEe-cC--CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeec
Q 003878 501 FDRSEFHVHQVFVP-SK--DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIR 577 (789)
Q Consensus 501 ~~~~~~~~~~~~~~-s~--dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~R 577 (789)
|....+.++.+.+. +. ..+-..|+.|+.|.. .|.+|+|++.||-.-. ..|....++.++..||+|++++.-
T Consensus 9 F~~G~~~~~~~~Vd~s~~~~~spPkpLlI~tP~~---~G~yPVilF~HG~~l~---ns~Ys~lL~HIASHGfIVVAPQl~ 82 (307)
T PF07224_consen 9 FETGKYKTKLFNVDTSSNSSPSPPKPLLIVTPSE---AGTYPVILFLHGFNLY---NSFYSQLLAHIASHGFIVVAPQLY 82 (307)
T ss_pred eecCCceeEEEeecCCCCCCCCCCCCeEEecCCc---CCCccEEEEeechhhh---hHHHHHHHHHHhhcCeEEEechhh
Confidence 45555666665552 11 111467889999986 5899999999995432 344455677888899999999975
Q ss_pred CCCCCChhHHhcccccCCcchHHHHHHHHHHHHHc--C------CCCCCcEEEEeeChHHHHHHHHHHhC-CC-ceeEEE
Q 003878 578 GGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA--G------YTQSRKLCIEGGSNGGLLVGACINQR-PD-LFGCAL 647 (789)
Q Consensus 578 G~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~--~------~~d~~~i~i~G~S~GG~l~~~~~~~~-pd-~f~a~v 647 (789)
... .......+++..++++||-+. . -.+.+++++.|||-||-.+.++|..+ .+ .|.|.|
T Consensus 83 ~~~-----------~p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLI 151 (307)
T PF07224_consen 83 TLF-----------PPDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALI 151 (307)
T ss_pred ccc-----------CCCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhhee
Confidence 321 134456678888999998754 1 23668999999999999999988865 22 377777
Q ss_pred ecCCcccc
Q 003878 648 AHVGVMDM 655 (789)
Q Consensus 648 ~~~p~~d~ 655 (789)
..-|+--+
T Consensus 152 GiDPV~G~ 159 (307)
T PF07224_consen 152 GIDPVAGT 159 (307)
T ss_pred cccccCCC
Confidence 77776543
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >KOG2984 consensus Predicted hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.4e-06 Score=81.39 Aligned_cols=205 Identities=13% Similarity=0.129 Sum_probs=122.5
Q ss_pred EEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCC---cchHHHHHHHHHHHHHcCCCC
Q 003878 540 CLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK---QNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 540 ~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~---~~~~~D~~~~~~~L~~~~~~d 616 (789)
.||.+-|.-|+ ....|.+...++....-+.++..|.+|-|..- ..+.+ +.-.+|..+|++-+... +
T Consensus 44 ~iLlipGalGs-~~tDf~pql~~l~k~l~~TivawDPpGYG~Sr-------PP~Rkf~~~ff~~Da~~avdLM~aL---k 112 (277)
T KOG2984|consen 44 YILLIPGALGS-YKTDFPPQLLSLFKPLQVTIVAWDPPGYGTSR-------PPERKFEVQFFMKDAEYAVDLMEAL---K 112 (277)
T ss_pred eeEeccccccc-ccccCCHHHHhcCCCCceEEEEECCCCCCCCC-------CCcccchHHHHHHhHHHHHHHHHHh---C
Confidence 45555666554 34567777777766555899999999955321 11112 12247888888877765 4
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCC--cccccccccc---cCCccchh--------hcCCCCcHHHH---
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG--VMDMLRYHKF---TIGHAWVS--------DFGCSEEEEEF--- 680 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p--~~d~~~~~~~---~~~~~~~~--------e~g~p~~~~~~--- 680 (789)
-.++.|+|+|-||..++.+|+++++.+.-.|.... .++-...+.+ .....|.. -||--.-+..+
T Consensus 113 ~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~wa~w 192 (277)
T KOG2984|consen 113 LEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFRTQWAAW 192 (277)
T ss_pred CCCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHHHHHHHH
Confidence 57999999999999999999999986655554432 2222221111 11112321 23211111111
Q ss_pred -HHHHhcCcc-------cCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEE
Q 003878 681 -YWLIKYSPL-------HNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGR 752 (789)
Q Consensus 681 -~~l~~~sP~-------~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~ 752 (789)
+...++--+ .-+.+ ..+|+||+||..|+.|+-.+.- |...+.. -.++.
T Consensus 193 vD~v~qf~~~~dG~fCr~~lp~----------vkcPtli~hG~kDp~~~~~hv~-fi~~~~~-------------~a~~~ 248 (277)
T KOG2984|consen 193 VDVVDQFHSFCDGRFCRLVLPQ----------VKCPTLIMHGGKDPFCGDPHVC-FIPVLKS-------------LAKVE 248 (277)
T ss_pred HHHHHHHhhcCCCchHhhhccc----------ccCCeeEeeCCcCCCCCCCCcc-chhhhcc-------------cceEE
Confidence 111111100 11233 3789999999999999987743 3333332 24789
Q ss_pred EeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 753 IERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 753 ~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
++|.++|.+.-.-. .+....+.+||.+
T Consensus 249 ~~peGkHn~hLrya--~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 249 IHPEGKHNFHLRYA--KEFNKLVLDFLKS 275 (277)
T ss_pred EccCCCcceeeech--HHHHHHHHHHHhc
Confidence 99999999875433 3667788899864
|
|
| >PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Probab=98.22 E-value=9.9e-05 Score=75.23 Aligned_cols=236 Identities=13% Similarity=0.008 Sum_probs=133.1
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHh
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 588 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~ 588 (789)
..+.+.+.+| ..+..--.|-.....+.+..+||-+||+||+..+-.| ....|.+.|..++.+|+.|.|--...
T Consensus 7 ~~~k~~~~~~-~~~~~~a~y~D~~~~gs~~gTVv~~hGsPGSH~DFkY---i~~~l~~~~iR~I~iN~PGf~~t~~~--- 79 (297)
T PF06342_consen 7 KLVKFQAENG-KIVTVQAVYEDSLPSGSPLGTVVAFHGSPGSHNDFKY---IRPPLDEAGIRFIGINYPGFGFTPGY--- 79 (297)
T ss_pred EEEEcccccC-ceEEEEEEEEecCCCCCCceeEEEecCCCCCccchhh---hhhHHHHcCeEEEEeCCCCCCCCCCC---
Confidence 3455666777 6777766665544334456699999999998665443 34667779999999999997742211
Q ss_pred cccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc--c---------c--
Q 003878 589 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM--D---------M-- 655 (789)
Q Consensus 589 ~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~--d---------~-- 655 (789)
.....+-.+-..-++.|.++--++ +++.++|||.|+-.++.+++.+|- .++++..|+- - +
T Consensus 80 ----~~~~~~n~er~~~~~~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~~--~g~~lin~~G~r~HkgIrp~~r~~~ 152 (297)
T PF06342_consen 80 ----PDQQYTNEERQNFVNALLDELGIK-GKLIFLGHSRGCENALQLAVTHPL--HGLVLINPPGLRPHKGIRPLSRMET 152 (297)
T ss_pred ----cccccChHHHHHHHHHHHHHcCCC-CceEEEEeccchHHHHHHHhcCcc--ceEEEecCCccccccCcCHHHHHHH
Confidence 111222234445555566553344 799999999999999999999873 3444444321 0 0
Q ss_pred ccc----ccccCCc----cchhhcCCC--CcHHHHHHHHhcCcc------cCCCCCCCCCCCCCCCCCeEEEEecCCCCC
Q 003878 656 LRY----HKFTIGH----AWVSDFGCS--EEEEEFYWLIKYSPL------HNVRRPWEQNPDKPFQYPSTLLLTADHDDR 719 (789)
Q Consensus 656 ~~~----~~~~~~~----~~~~e~g~p--~~~~~~~~l~~~sP~------~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~ 719 (789)
+.+ .+...+. ..+.-.|-- ...+....|+...-. .+++...+ ...|+|++.|.+|..
T Consensus 153 i~~l~~~lp~~~~~~i~~~~y~~iG~KV~~GeeA~na~r~m~~~df~~q~~~I~~ln~-------~~ikvli~ygg~DhL 225 (297)
T PF06342_consen 153 INYLYDLLPRFIINAIMYFYYRMIGFKVSDGEEAINAMRSMQNCDFEEQKEYIDKLNK-------KPIKVLIAYGGKDHL 225 (297)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhCeeecChHHHHHHHHHHHhcCHHHHHHHHHHhcc-------CCCcEEEEEcCcchh
Confidence 000 0000000 001112322 223444455533222 12222211 247999999999999
Q ss_pred CCcHHHHHHHHHHHHhhccCCC------------CC-CCCCcEEEEEeCCCCcCCCCch
Q 003878 720 VVPLHSLKLLATMQYVLCTSLE------------NS-PQTNPIIGRIERKAGHGVGLPT 765 (789)
Q Consensus 720 V~~~~~~~~~~~L~~~~~~~~~------------~~-~~~~~~~l~~~~~~gH~~~~~~ 765 (789)
|--+.+.++....+...--+++ ++ .++..-.-..+...||...+..
T Consensus 226 IEeeI~~E~a~~f~~l~Hf~~~~~~seee~~kI~~~f~~~~~~~sv~f~~dgHf~qK~~ 284 (297)
T PF06342_consen 226 IEEEISFEFAMKFKGLDHFNIEKEISEEEKPKILKSFASGQKGASVFFAKDGHFQQKFR 284 (297)
T ss_pred hHHHHHHHHHHHhCCccceeeecCCChhHHHHHHHHHhcCCceeEEEEecCChHHhHHH
Confidence 9877777776665432000000 00 1233444456678899875543
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00042 Score=74.05 Aligned_cols=261 Identities=13% Similarity=0.129 Sum_probs=152.6
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
-.+..+.|+.||..||++ ++...+++|+..++... ++... .|- ..+..|-..|
T Consensus 236 kdVT~L~Wn~~G~~LatG-----~~~G~~riw~~~G~l~~--tl~~H-------kgP----I~slKWnk~G--------- 288 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATG-----SEDGEARIWNKDGNLIS--TLGQH-------KGP----IFSLKWNKKG--------- 288 (524)
T ss_pred CCcceEEecCCCCeEEEe-----ecCcEEEEEecCchhhh--hhhcc-------CCc----eEEEEEcCCC---------
Confidence 357889999999999964 44558999998765332 12211 110 0112222333
Q ss_pred eeeEEEeeeccccceeeeeeec-----cccc-----ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVS-----QFKF-----SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHF 281 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~-----~~~~-----~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (789)
+++.+++.+|+.-||...- ++.+ -.+.|-.+ ..|+-. .....|++.+
T Consensus 289 ---~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts-------------------~td~~i~V~k 345 (524)
T KOG0273|consen 289 ---TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATS-------------------STDGCIHVCK 345 (524)
T ss_pred ---CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEeec-------------------CCCceEEEEE
Confidence 4577778888888887633 2221 12455432 233322 1223478888
Q ss_pred CCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc
Q 003878 282 LGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA 361 (789)
Q Consensus 282 lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (789)
++.+... ..+... ..-+..+.|.|.|+.|+-.+.+ ..+-++...... ....+......
T Consensus 346 v~~~~P~--~t~~GH--~g~V~alk~n~tg~LLaS~SdD-----~TlkiWs~~~~~-------------~~~~l~~Hske 403 (524)
T KOG0273|consen 346 VGEDRPV--KTFIGH--HGEVNALKWNPTGSLLASCSDD-----GTLKIWSMGQSN-------------SVHDLQAHSKE 403 (524)
T ss_pred ecCCCcc--eeeecc--cCceEEEEECCCCceEEEecCC-----CeeEeeecCCCc-------------chhhhhhhccc
Confidence 8765432 233332 3345678999999988765543 224445443311 01111111122
Q ss_pred eeE-EEecCCCE-------EEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEE
Q 003878 362 QYE-VIANDDTV-------FTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQ 433 (789)
Q Consensus 362 ~~~-~~s~dG~~-------l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~ 433 (789)
.|. .|+|+|.- +.+++ .+.+.-|.++|+..+.....+..+. ..+.+++++++++.+++.+.++ .|.
T Consensus 404 i~t~~wsp~g~v~~n~~~~~~l~s--as~dstV~lwdv~~gv~i~~f~kH~--~pVysvafS~~g~ylAsGs~dg--~V~ 477 (524)
T KOG0273|consen 404 IYTIKWSPTGPVTSNPNMNLMLAS--ASFDSTVKLWDVESGVPIHTLMKHQ--EPVYSVAFSPNGRYLASGSLDG--CVH 477 (524)
T ss_pred eeeEeecCCCCccCCCcCCceEEE--eecCCeEEEEEccCCceeEeeccCC--CceEEEEecCCCcEEEecCCCC--eeE
Confidence 232 37776531 01111 1235667888888876445555665 5678999998788888888887 688
Q ss_pred EEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcC
Q 003878 434 IRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS 471 (789)
Q Consensus 434 ~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss 471 (789)
+|+.++|+..+... ..+.|..+.|+.+++.+...++.
T Consensus 478 iws~~~~~l~~s~~-~~~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 478 IWSTKTGKLVKSYQ-GTGGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred eccccchheeEeec-CCCeEEEEEEcCCCCEEEEEecC
Confidence 88998888755554 34567788999999988877653
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00028 Score=72.06 Aligned_cols=165 Identities=12% Similarity=0.025 Sum_probs=95.6
Q ss_pred CCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccc
Q 003878 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYL 208 (789)
Q Consensus 129 ~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (789)
++.-.|.++++||=+.... +++...+|++||+.+.+-.- +-...
T Consensus 98 GH~~~V~sL~~sP~~d~Fl-----S~S~D~tvrLWDlR~~~cqg--~l~~~----------------------------- 141 (311)
T KOG1446|consen 98 GHKKRVNSLSVSPKDDTFL-----SSSLDKTVRLWDLRVKKCQG--LLNLS----------------------------- 141 (311)
T ss_pred CCCceEEEEEecCCCCeEE-----ecccCCeEEeeEecCCCCce--EEecC-----------------------------
Confidence 4455788899999887665 55666799999998653321 11110
Q ss_pred ccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC
Q 003878 209 RGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE 288 (789)
Q Consensus 209 ~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~ 288 (789)
.-.-.++.|.|-.++.... . ..|.++++..=...
T Consensus 142 ---------------------------~~pi~AfDp~GLifA~~~~------------------~-~~IkLyD~Rs~dkg 175 (311)
T KOG1446|consen 142 ---------------------------GRPIAAFDPEGLIFALANG------------------S-ELIKLYDLRSFDKG 175 (311)
T ss_pred ---------------------------CCcceeECCCCcEEEEecC------------------C-CeEEEEEecccCCC
Confidence 0245788887755554311 1 14666666432222
Q ss_pred cEEEE--ecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-cceeEE
Q 003878 289 DILCW--KDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEV 365 (789)
Q Consensus 289 ~~~~~--~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~ 365 (789)
.-..+ ..+++.. ...+.+|||||+|++++.. +.++++|.=+|.- ...+....... ...-..
T Consensus 176 PF~tf~i~~~~~~e-w~~l~FS~dGK~iLlsT~~-----s~~~~lDAf~G~~----------~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 176 PFTTFSITDNDEAE-WTDLEFSPDGKSILLSTNA-----SFIYLLDAFDGTV----------KSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CceeEccCCCCccc-eeeeEEcCCCCEEEEEeCC-----CcEEEEEccCCcE----------eeeEeeccCCCCcceeEE
Confidence 22222 2223333 3578999999999998753 5588998766520 00010000000 111245
Q ss_pred EecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 366 IANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 366 ~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
++|||+.+... +.+++|..++++++.
T Consensus 240 ftPds~Fvl~g----s~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 240 FTPDSKFVLSG----SDDGTIHVWNLETGK 265 (311)
T ss_pred ECCCCcEEEEe----cCCCcEEEEEcCCCc
Confidence 89999876532 345789999998886
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00077 Score=70.00 Aligned_cols=280 Identities=15% Similarity=0.124 Sum_probs=161.5
Q ss_pred cEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccc
Q 003878 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 131 ~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
..++..+-+.|+--.++ ..++.++|++||..||+.+. .+.+. +. + .+.+ +-
T Consensus 108 r~~vt~v~~hp~~~~v~-----~as~d~tikv~D~~tg~~e~-~LrGH----t~--s-v~di----------------~~ 158 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVV-----SASEDATIKVFDTETGELER-SLRGH----TD--S-VFDI----------------SF 158 (406)
T ss_pred ccceeeeeeccCceEEE-----EecCCceEEEEEccchhhhh-hhhcc----cc--c-eeEE----------------EE
Confidence 34566677778754444 23457899999999997642 22221 00 0 0000 00
Q ss_pred ceeeEEEeeeccccceeeeeeec-----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEE
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVS-----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYY 279 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~-----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (789)
--+-++|.++..+-..+||...- ....+++.+-|-|..|+-. .+.+.|..
T Consensus 159 ~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~-------------------srD~tik~ 219 (406)
T KOG0295|consen 159 DASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSC-------------------SRDNTIKA 219 (406)
T ss_pred ecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeec-------------------ccccceeE
Confidence 00115666666666689998765 2224788899999777633 34456888
Q ss_pred EECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc
Q 003878 280 HFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF 359 (789)
Q Consensus 280 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~ 359 (789)
|++.++-. ++.-+.++.++..+..+-||..++-.+. ...|.++-++++..+.. ++ ....+..++.-..
T Consensus 220 We~~tg~c----v~t~~~h~ewvr~v~v~~DGti~As~s~-----dqtl~vW~~~t~~~k~~-lR--~hEh~vEci~wap 287 (406)
T KOG0295|consen 220 WECDTGYC----VKTFPGHSEWVRMVRVNQDGTIIASCSN-----DQTLRVWVVATKQCKAE-LR--EHEHPVECIAWAP 287 (406)
T ss_pred Eeccccee----EEeccCchHhEEEEEecCCeeEEEecCC-----CceEEEEEeccchhhhh-hh--ccccceEEEEecc
Confidence 88887643 3333445567778888999987764432 34566666665421100 00 0011111111000
Q ss_pred cceeEEE---ec--CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEE
Q 003878 360 DAQYEVI---AN--DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 360 ~~~~~~~---s~--dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~ 434 (789)
...++.+ .+ +|..+.....+ +..|-.+|+.++.-.-+|..+. ..+.+++++++++.+++..+|. .|.+
T Consensus 288 ~~~~~~i~~at~~~~~~~~l~s~Sr---DktIk~wdv~tg~cL~tL~ghd--nwVr~~af~p~Gkyi~ScaDDk--tlrv 360 (406)
T KOG0295|consen 288 ESSYPSISEATGSTNGGQVLGSGSR---DKTIKIWDVSTGMCLFTLVGHD--NWVRGVAFSPGGKYILSCADDK--TLRV 360 (406)
T ss_pred cccCcchhhccCCCCCccEEEeecc---cceEEEEeccCCeEEEEEeccc--ceeeeeEEcCCCeEEEEEecCC--cEEE
Confidence 1112211 11 22233333322 3567778998886455666665 5688999998788888888887 7899
Q ss_pred EECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEE
Q 003878 435 RDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVY 479 (789)
Q Consensus 435 ~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly 479 (789)
||+++++..+.+..+..-+..+.+..+.. ++...+..++..++
T Consensus 361 wdl~~~~cmk~~~ah~hfvt~lDfh~~~p--~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 361 WDLKNLQCMKTLEAHEHFVTSLDFHKTAP--YVVTGSVDQTVKVW 403 (406)
T ss_pred EEeccceeeeccCCCcceeEEEecCCCCc--eEEeccccceeeee
Confidence 99998887777776666666666654444 44445555555443
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00028 Score=70.34 Aligned_cols=246 Identities=17% Similarity=0.127 Sum_probs=139.9
Q ss_pred CCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccc
Q 003878 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYL 208 (789)
Q Consensus 129 ~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (789)
+++.++-.+.++.|.++|. .|+...++++||+++|+.+...-.++
T Consensus 50 GHtGavW~~Did~~s~~li-----TGSAD~t~kLWDv~tGk~la~~k~~~------------------------------ 94 (327)
T KOG0643|consen 50 GHTGAVWCCDIDWDSKHLI-----TGSADQTAKLWDVETGKQLATWKTNS------------------------------ 94 (327)
T ss_pred CCCceEEEEEecCCcceee-----eccccceeEEEEcCCCcEEEEeecCC------------------------------
Confidence 4556677788999999998 67778999999999998876322222
Q ss_pred ccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCC--
Q 003878 209 RGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ-- 286 (789)
Q Consensus 209 ~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~-- 286 (789)
....+.|+++|..++++.... .+....|.+.++..+.
T Consensus 95 ---------------------------~Vk~~~F~~~gn~~l~~tD~~--------------mg~~~~v~~fdi~~~~~~ 133 (327)
T KOG0643|consen 95 ---------------------------PVKRVDFSFGGNLILASTDKQ--------------MGYTCFVSVFDIRDDSSD 133 (327)
T ss_pred ---------------------------eeEEEeeccCCcEEEEEehhh--------------cCcceEEEEEEccCChhh
Confidence 246788999999999987543 3455567777776333
Q ss_pred --CCc-EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec--cccc
Q 003878 287 --SED-ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID--GFDA 361 (789)
Q Consensus 287 --~~~-~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~--~~~~ 361 (789)
+++ .+...-+ ...+..+-|+|-|++|+..-.+ ..|-.+|+.+|.. ...-.. ....
T Consensus 134 ~~s~ep~~kI~t~--~skit~a~Wg~l~~~ii~Ghe~-----G~is~~da~~g~~-------------~v~s~~~h~~~I 193 (327)
T KOG0643|consen 134 IDSEEPYLKIPTP--DSKITSALWGPLGETIIAGHED-----GSISIYDARTGKE-------------LVDSDEEHSSKI 193 (327)
T ss_pred hcccCceEEecCC--ccceeeeeecccCCEEEEecCC-----CcEEEEEcccCce-------------eeechhhhcccc
Confidence 222 2322222 2345678899999999865433 3477788887520 111100 0111
Q ss_pred eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCC
Q 003878 362 QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNG 440 (789)
Q Consensus 362 ~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG 440 (789)
..-.+++|..+|+ ...++ ...+| +|..+-+-.++...+. .+...++++ .+++++..-.++. .+-.-..+.|
T Consensus 194 nd~q~s~d~T~Fi-T~s~D-ttakl--~D~~tl~v~Kty~te~---PvN~aaisP~~d~VilgGGqeA~-dVTTT~~r~G 265 (327)
T KOG0643|consen 194 NDLQFSRDRTYFI-TGSKD-TTAKL--VDVRTLEVLKTYTTER---PVNTAAISPLLDHVILGGGQEAM-DVTTTSTRAG 265 (327)
T ss_pred ccccccCCcceEE-ecccC-cccee--eeccceeeEEEeeecc---cccceecccccceEEecCCceee-eeeeeccccc
Confidence 1123677765443 33332 23333 4555443233333333 344445554 2677765554432 2222222224
Q ss_pred c------------eeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEE
Q 003878 441 S------------LLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 441 ~------------~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~d 482 (789)
+ ...++..+-|.+.+++++|+|+ +|+|-..-+.+.++.
T Consensus 266 KFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk----sYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 266 KFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK----SYSSGGEDGYVRLHH 315 (327)
T ss_pred chhhhHHHHHHHHHhccccccccCcceeEECCCCc----ccccCCCCceEEEEE
Confidence 2 1223343466778889999998 445555555555443
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00087 Score=69.66 Aligned_cols=118 Identities=10% Similarity=0.116 Sum_probs=79.0
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+.-+|....||.||.+|| .|+=...|.||+..+|...-.....+.
T Consensus 105 HKDSVt~~~FshdgtlLA-----TGdmsG~v~v~~~stg~~~~~~~~e~~------------------------------ 149 (399)
T KOG0296|consen 105 HKDSVTCCSFSHDGTLLA-----TGDMSGKVLVFKVSTGGEQWKLDQEVE------------------------------ 149 (399)
T ss_pred CCCceEEEEEccCceEEE-----ecCCCccEEEEEcccCceEEEeecccC------------------------------
Confidence 345688899999999999 566667899999999964321111110
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
...=+.|.|-+..|+....+ -.+|.|.++.+ ..
T Consensus 150 --------------------------dieWl~WHp~a~illAG~~D-------------------GsvWmw~ip~~--~~ 182 (399)
T KOG0296|consen 150 --------------------------DIEWLKWHPRAHILLAGSTD-------------------GSVWMWQIPSQ--AL 182 (399)
T ss_pred --------------------------ceEEEEecccccEEEeecCC-------------------CcEEEEECCCc--ce
Confidence 12456799988777765433 24899999874 23
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCC
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 336 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g 336 (789)
..++.++.-+ .....++||||+++-...+ ..|.+++++++
T Consensus 183 ~kv~~Gh~~~--ct~G~f~pdGKr~~tgy~d-----gti~~Wn~ktg 222 (399)
T KOG0296|consen 183 CKVMSGHNSP--CTCGEFIPDGKRILTGYDD-----GTIIVWNPKTG 222 (399)
T ss_pred eeEecCCCCC--cccccccCCCceEEEEecC-----ceEEEEecCCC
Confidence 4456554322 2346789999999866543 44788888775
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0017 Score=71.06 Aligned_cols=170 Identities=15% Similarity=0.144 Sum_probs=85.0
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC--cEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE--DILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~--~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
..+.++|||+.++..-. ...+|+.+++.....+ .......+... --..+.++|||++++
T Consensus 147 H~v~~~pdg~~v~v~dl------------------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~-GPRh~~f~pdg~~~Y 207 (345)
T PF10282_consen 147 HQVVFSPDGRFVYVPDL------------------GADRVYVYDIDDDTGKLTPVDSIKVPPGS-GPRHLAFSPDGKYAY 207 (345)
T ss_dssp EEEEE-TTSSEEEEEET------------------TTTEEEEEEE-TTS-TEEEEEEEECSTTS-SEEEEEE-TTSSEEE
T ss_pred eeEEECCCCCEEEEEec------------------CCCEEEEEEEeCCCceEEEeeccccccCC-CCcEEEEcCCcCEEE
Confidence 56899999999987632 2346888888655422 11112222211 123578999999988
Q ss_pred EEEEcCCCCceEEEEEECC--CCCCCcccccccCCCCccEeeecccc----ceeEEEecCCCEEEEEECCCCCCceEEEE
Q 003878 316 MCIEENCDPVNKVYYCDLS--ALPEGLEGFKKRDGLLPFVKLIDGFD----AQYEVIANDDTVFTFLTNKDAPKYKIIRV 389 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~--~g~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~s~dG~~l~~~tn~~~~~~~L~~~ 389 (789)
+.... .+.|.++++. ++. +..+ .....+..++. ..--.++|||++||+ +|++. ..|..+
T Consensus 208 v~~e~----s~~v~v~~~~~~~g~--~~~~------~~~~~~~~~~~~~~~~~~i~ispdg~~lyv-snr~~--~sI~vf 272 (345)
T PF10282_consen 208 VVNEL----SNTVSVFDYDPSDGS--LTEI------QTISTLPEGFTGENAPAEIAISPDGRFLYV-SNRGS--NSISVF 272 (345)
T ss_dssp EEETT----TTEEEEEEEETTTTE--EEEE------EEEESCETTSCSSSSEEEEEE-TTSSEEEE-EECTT--TEEEEE
T ss_pred EecCC----CCcEEEEeecccCCc--eeEE------EEeeeccccccccCCceeEEEecCCCEEEE-EeccC--CEEEEE
Confidence 76532 3556666665 321 1000 00000111111 112248999998875 66654 445555
Q ss_pred EC--CCCC-CeEEeccCCCCceeeeEEEecCCE-EEEEEEeCCeEEEEEEECCCCce
Q 003878 390 DL--KEPN-DWFEVIPEAERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 390 dl--~~~~-~~~~l~~~~~~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
++ +++. .....++-. ...-..+.+++++. |++.....+.-.++.+|.++|..
T Consensus 273 ~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 273 DLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp EECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence 55 4444 111222222 23346788887654 55444444444566667777764
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00022 Score=71.00 Aligned_cols=172 Identities=9% Similarity=0.049 Sum_probs=97.9
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCC--cccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN--LYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYL 314 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l 314 (789)
...+.|+|+|+.|++......++ +... ....||+.+......+ ..+... ...+.+++|||+|+.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~---------~~ks~~~~~~l~~~~~~~~~~~---~i~l~~-~~~I~~~~WsP~g~~f 74 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDK---------SGKSYYGEFELFYLNEKNIPVE---SIELKK-EGPIHDVAWSPNGNEF 74 (194)
T ss_pred eEEEEecccCCEEEEEEEEeecc---------CcceEEeeEEEEEEecCCCccc---eeeccC-CCceEEEEECcCCCEE
Confidence 36799999999999876522111 0011 2234666544332221 222222 1226789999999999
Q ss_pred EEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCC
Q 003878 315 VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 394 (789)
Q Consensus 315 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~ 394 (789)
++..... ...+.++|++..+ ...+ .........|+|+|+.|++..-. ..++.|..+|+.+.
T Consensus 75 avi~g~~---~~~v~lyd~~~~~--------------i~~~-~~~~~n~i~wsP~G~~l~~~g~~-n~~G~l~~wd~~~~ 135 (194)
T PF08662_consen 75 AVIYGSM---PAKVTLYDVKGKK--------------IFSF-GTQPRNTISWSPDGRFLVLAGFG-NLNGDLEFWDVRKK 135 (194)
T ss_pred EEEEccC---CcccEEEcCcccE--------------eEee-cCCCceEEEECCCCCEEEEEEcc-CCCcEEEEEECCCC
Confidence 8765322 2357777776311 1111 11111234599999988876543 23478999999854
Q ss_pred CCeEEeccCCCCceeeeEEEecCCEEEEEEEeC----CeEEEEEEECCCCceeee
Q 003878 395 NDWFEVIPEAERDVLESATAVNLNQMIVSYLSD----VKYVLQIRDLKNGSLLHQ 445 (789)
Q Consensus 395 ~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~----g~~~L~~~dl~tG~~~~~ 445 (789)
+ .+.... ......+.|+++++.+++.... ..+.+.+|+.. |+.+.+
T Consensus 136 ~---~i~~~~-~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 136 K---KISTFE-HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred E---Eeeccc-cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 3 332222 2346788999976655555432 22356777776 665443
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00049 Score=73.92 Aligned_cols=229 Identities=16% Similarity=0.177 Sum_probs=143.8
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccccee
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFF 213 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 213 (789)
+.++.+-.||+.|| .|++...++|+|..+..++. .+...
T Consensus 71 v~s~~fR~DG~Lla-----aGD~sG~V~vfD~k~r~iLR-~~~ah----------------------------------- 109 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLA-----AGDESGHVKVFDMKSRVILR-QLYAH----------------------------------- 109 (487)
T ss_pred eeEEEeecCCeEEE-----ccCCcCcEEEeccccHHHHH-HHhhc-----------------------------------
Confidence 66788999999999 57777899999977754442 22211
Q ss_pred eEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEE
Q 003878 214 FFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCW 293 (789)
Q Consensus 214 ~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~ 293 (789)
+.......|+|++.+++.+..+. ..+.+|++.+.. ..+
T Consensus 110 --------------------~apv~~~~f~~~d~t~l~s~sDd------------------~v~k~~d~s~a~----v~~ 147 (487)
T KOG0310|consen 110 --------------------QAPVHVTKFSPQDNTMLVSGSDD------------------KVVKYWDLSTAY----VQA 147 (487)
T ss_pred --------------------cCceeEEEecccCCeEEEecCCC------------------ceEEEEEcCCcE----EEE
Confidence 00345678899999998875443 346778887653 244
Q ss_pred ecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEE
Q 003878 294 KDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVF 373 (789)
Q Consensus 294 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l 373 (789)
+...+..|+...+++|-...++++..- ...|.++|+.... .....+-.+...+...+-|.|..|
T Consensus 148 ~l~~htDYVR~g~~~~~~~hivvtGsY----Dg~vrl~DtR~~~------------~~v~elnhg~pVe~vl~lpsgs~i 211 (487)
T KOG0310|consen 148 ELSGHTDYVRCGDISPANDHIVVTGSY----DGKVRLWDTRSLT------------SRVVELNHGCPVESVLALPSGSLI 211 (487)
T ss_pred EecCCcceeEeeccccCCCeEEEecCC----CceEEEEEeccCC------------ceeEEecCCCceeeEEEcCCCCEE
Confidence 555667788889999999988876532 3457788876621 111222222222223355777766
Q ss_pred EEEECCCCCCceEEEEECCCCCCeEEeccCC-CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCee
Q 003878 374 TFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGS 452 (789)
Q Consensus 374 ~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~-~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~ 452 (789)
+- ++...+-+||+.+|. +.+.... ....+..+.+..++.-+++..-|+ ++.++|..+=+.+.....| +.
T Consensus 212 as-----AgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~--~VKVfd~t~~Kvv~s~~~~-~p 281 (487)
T KOG0310|consen 212 AS-----AGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR--HVKVFDTTNYKVVHSWKYP-GP 281 (487)
T ss_pred EE-----cCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeeccccc--ceEEEEccceEEEEeeecc-cc
Confidence 52 334578889998665 3333222 234566777666556666666666 6788886544444444444 34
Q ss_pred EEEeecccCCcEEEEEEcC
Q 003878 453 VNAISARREDSVVFISFTS 471 (789)
Q Consensus 453 v~~~s~s~d~~~l~~~~ss 471 (789)
|-+++.+||+..+++..++
T Consensus 282 vLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 282 VLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred eeeEEecCCCceEEEeccc
Confidence 5567888888888775543
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00066 Score=73.96 Aligned_cols=198 Identities=11% Similarity=0.084 Sum_probs=112.5
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc-EEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED-ILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~-~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+.|||-+.-|+|..-. ..+.|.++-+..+.+.+.-. .-++... -.-+.|-..|+||.+
T Consensus 350 r~FswsP~~~llAYwtpe--------------~~~~parvtL~evPs~~~iRt~nlfnVs-----DckLhWQk~gdyLcv 410 (698)
T KOG2314|consen 350 RDFSWSPTSNLLAYWTPE--------------TNNIPARVTLMEVPSKREIRTKNLFNVS-----DCKLHWQKSGDYLCV 410 (698)
T ss_pred cCcccCCCcceEEEEccc--------------ccCCcceEEEEecCccceeeeccceeee-----ccEEEeccCCcEEEE
Confidence 578999999999998422 13456667777766543211 0112211 135789999999999
Q ss_pred EEEcCCCC-------ceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCCEEEEEECCC-CCCceEE
Q 003878 317 CIEENCDP-------VNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKD-APKYKII 387 (789)
Q Consensus 317 ~~~~~~~~-------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~~l~~~tn~~-~~~~~L~ 387 (789)
...+.... +-+|+.++-.. .|+..+-- .+... -.|.|.|+.+.+++... ..+-+.|
T Consensus 411 kvdR~tK~~~~g~f~n~eIfrireKd--------------Ipve~vel-ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY 475 (698)
T KOG2314|consen 411 KVDRHTKSKVKGQFSNLEIFRIREKD--------------IPVEVVEL-KESVIAFAWEPHGDKFAVISGNTVKNTVSFY 475 (698)
T ss_pred EEEeeccccccceEeeEEEEEeeccC--------------CCceeeec-chheeeeeeccCCCeEEEEEccccccceeEE
Confidence 88765421 23455444322 22222110 11112 23999999999887643 3456667
Q ss_pred EEECCCCCCeEEeccCCCCceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEeecccCCcEE
Q 003878 388 RVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVV 465 (789)
Q Consensus 388 ~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s~d~~~l 465 (789)
.+...... ++ ++..-+...-..+.|++.+ .+++.........|..+|.+-... +.+..+ ....+.+.|+|.|+.+
T Consensus 476 ~~e~~~~~-~~-lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~-k~~~~~eh~~at~veWDPtGRYv 552 (698)
T KOG2314|consen 476 AVETNIKK-PS-LVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL-KDTASPEHFAATEVEWDPTGRYV 552 (698)
T ss_pred EeecCCCc-hh-hhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhh-hhccCccccccccceECCCCCEE
Confidence 66643333 33 2222223445678888844 455666555556899999863222 344333 3334567789989866
Q ss_pred EEEEcCC
Q 003878 466 FISFTSF 472 (789)
Q Consensus 466 ~~~~ss~ 472 (789)
.-+.+++
T Consensus 553 vT~ss~w 559 (698)
T KOG2314|consen 553 VTSSSSW 559 (698)
T ss_pred EEeeehh
Confidence 5444443
|
|
| >COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=4e-05 Score=81.02 Aligned_cols=112 Identities=21% Similarity=0.200 Sum_probs=71.7
Q ss_pred CCccEEEEEcCCCCccCCCCCC-----HHHHHHHH------cCCeEEEEEeecCCC--CCChh-HHhccc---ccCCcch
Q 003878 536 GSHPCLLYGYGGFNISVTPSFS-----VSRTILMR------HLGAVFCIANIRGGG--EYGEE-WHKGGA---LAKKQNC 598 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~-----~~~~~~l~------~~G~~v~~~~~RG~g--~~g~~-~~~~~~---~~~~~~~ 598 (789)
.+..+||++||-.|.+...... .-|..++- -.-|-|++.|.=||. ..|+. ....|+ .....-+
T Consensus 49 ~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~t 128 (368)
T COG2021 49 EKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVIT 128 (368)
T ss_pred cCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCccc
Confidence 4567999999976643322210 11233332 233889999998764 23332 111111 1123356
Q ss_pred HHHHHHHHHHHHHc-CCCCCCcEE-EEeeChHHHHHHHHHHhCCCceeEEEecC
Q 003878 599 FDDFISASEYLISA-GYTQSRKLC-IEGGSNGGLLVGACINQRPDLFGCALAHV 650 (789)
Q Consensus 599 ~~D~~~~~~~L~~~-~~~d~~~i~-i~G~S~GG~l~~~~~~~~pd~f~a~v~~~ 650 (789)
+.|.+.+-+.|++. |+ ++|. |+|+||||+.++..+..+||+...+|..+
T Consensus 129 i~D~V~aq~~ll~~LGI---~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia 179 (368)
T COG2021 129 IRDMVRAQRLLLDALGI---KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIA 179 (368)
T ss_pred HHHHHHHHHHHHHhcCc---ceEeeeeccChHHHHHHHHHHhChHHHhhhheec
Confidence 78999998888776 44 3565 99999999999999999999877666543
|
|
| >KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.3e-05 Score=80.48 Aligned_cols=117 Identities=19% Similarity=0.211 Sum_probs=76.8
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHh
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 588 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~ 588 (789)
+.+.++..++ ++..++-.|. ....|++++.|||..+ ...|......+....-..++++|.||.|+.--+-..
T Consensus 51 edv~i~~~~~--t~n~Y~t~~~----~t~gpil~l~HG~G~S--~LSfA~~a~el~s~~~~r~~a~DlRgHGeTk~~~e~ 122 (343)
T KOG2564|consen 51 EDVSIDGSDL--TFNVYLTLPS----ATEGPILLLLHGGGSS--ALSFAIFASELKSKIRCRCLALDLRGHGETKVENED 122 (343)
T ss_pred cccccCCCcc--eEEEEEecCC----CCCccEEEEeecCccc--chhHHHHHHHHHhhcceeEEEeeccccCccccCChh
Confidence 3455554443 5666665554 2467999999997544 345555445555555677899999999874221111
Q ss_pred cccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC
Q 003878 589 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR 639 (789)
Q Consensus 589 ~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~ 639 (789)
.........|+.+.++++-.. ++.+|+++||||||.++...+...
T Consensus 123 ---dlS~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k 167 (343)
T KOG2564|consen 123 ---DLSLETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASK 167 (343)
T ss_pred ---hcCHHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhh
Confidence 122233457888888888743 456799999999999998877653
|
|
| >COG4188 Predicted dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.1e-05 Score=85.27 Aligned_cols=130 Identities=13% Similarity=0.082 Sum_probs=89.0
Q ss_pred EEEEEEecCC-CceEEEEEEEecCCCC---CCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCC
Q 003878 508 VHQVFVPSKD-GSTKIPMFIVSKKNIK---LDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 583 (789)
Q Consensus 508 ~~~~~~~s~d-g~~~i~~~l~~p~~~~---~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g 583 (789)
...+++.... + .+++..+++|.... .-.+.|+|++.||.... ...|.. ....+++.||+|+.++..|+..-+
T Consensus 38 ~~~i~~~~~~r~-~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~--~~~f~~-~A~~lAs~Gf~Va~~~hpgs~~~~ 113 (365)
T COG4188 38 FVTITLNDPQRD-RERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSY--VTGFAW-LAEHLASYGFVVAAPDHPGSNAGG 113 (365)
T ss_pred EEEEeccCcccC-CccccceeccCCCccccccCcCCeEEecCCCCCC--ccchhh-hHHHHhhCceEEEeccCCCccccc
Confidence 4455555543 5 68999999998643 12488999999996443 233332 355667799999999999976544
Q ss_pred hhHHhcccccCCc----chHHHHHHHHHHHHHc-------CCCCCCcEEEEeeChHHHHHHHHHHhCCC
Q 003878 584 EEWHKGGALAKKQ----NCFDDFISASEYLISA-------GYTQSRKLCIEGGSNGGLLVGACINQRPD 641 (789)
Q Consensus 584 ~~~~~~~~~~~~~----~~~~D~~~~~~~L~~~-------~~~d~~~i~i~G~S~GG~l~~~~~~~~pd 641 (789)
..=+.++...... .--.|+-..+++|... +-.|+.+|++.|||+||+.++.++.-+.+
T Consensus 114 ~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~ 182 (365)
T COG4188 114 APAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELD 182 (365)
T ss_pred CChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhcccccc
Confidence 4434443222111 1235777788887766 34688999999999999999988776554
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0033 Score=65.77 Aligned_cols=172 Identities=15% Similarity=0.136 Sum_probs=89.9
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE--EecCCCCeeEEEEEEecCCcEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC--WKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~--~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
....++||++.|+.... ...+|+.+++..+.-+.... ......| .-+.|.|+|+++.
T Consensus 148 H~a~~tP~~~~l~v~DL------------------G~Dri~~y~~~dg~L~~~~~~~v~~G~GP---RHi~FHpn~k~aY 206 (346)
T COG2706 148 HSANFTPDGRYLVVPDL------------------GTDRIFLYDLDDGKLTPADPAEVKPGAGP---RHIVFHPNGKYAY 206 (346)
T ss_pred ceeeeCCCCCEEEEeec------------------CCceEEEEEcccCccccccccccCCCCCc---ceEEEcCCCcEEE
Confidence 45678999999987632 23457777776433222111 1222223 2468999999987
Q ss_pred EEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce-e---EEEecCCCEEEEEECCCCCCceEEEEEC
Q 003878 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-Y---EVIANDDTVFTFLTNKDAPKYKIIRVDL 391 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~---~~~s~dG~~l~~~tn~~~~~~~L~~~dl 391 (789)
+...-.+ +-.+|-++-..++ ++. -+....+..++... + --+++||+.|| .+|+....-.++.+|.
T Consensus 207 ~v~EL~s--tV~v~~y~~~~g~--~~~------lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY-asNRg~dsI~~f~V~~ 275 (346)
T COG2706 207 LVNELNS--TVDVLEYNPAVGK--FEE------LQTIDTLPEDFTGTNWAAAIHISPDGRFLY-ASNRGHDSIAVFSVDP 275 (346)
T ss_pred EEeccCC--EEEEEEEcCCCce--EEE------eeeeccCccccCCCCceeEEEECCCCCEEE-EecCCCCeEEEEEEcC
Confidence 7654321 3334444433222 110 01111111222211 1 12789998776 6888766556666676
Q ss_pred CCCC-CeEEeccCCCCceeeeEEEecCCEEEEEEEeCC-eEEEEEEECCCCce
Q 003878 392 KEPN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSDV-KYVLQIRDLKNGSL 442 (789)
Q Consensus 392 ~~~~-~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g-~~~L~~~dl~tG~~ 442 (789)
.++. .....++.. ...-.++.+.+++.+++...+++ .-.++..|.++|+.
T Consensus 276 ~~g~L~~~~~~~te-g~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L 327 (346)
T COG2706 276 DGGKLELVGITPTE-GQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRL 327 (346)
T ss_pred CCCEEEEEEEeccC-CcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceE
Confidence 6664 111222221 23235677776555555555554 34677777777765
|
|
| >COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.1e-05 Score=74.39 Aligned_cols=205 Identities=12% Similarity=0.045 Sum_probs=109.7
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCC-
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY- 614 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~- 614 (789)
.+.-++.+.|-|.+.+.-..|. .-|. .-..++.+.+.|-+.. .+...++|+.+.++.|...-.
T Consensus 6 ~~~~L~cfP~AGGsa~~fr~W~----~~lp-~~iel~avqlPGR~~r-----------~~ep~~~di~~Lad~la~el~~ 69 (244)
T COG3208 6 ARLRLFCFPHAGGSASLFRSWS----RRLP-ADIELLAVQLPGRGDR-----------FGEPLLTDIESLADELANELLP 69 (244)
T ss_pred CCceEEEecCCCCCHHHHHHHH----hhCC-chhheeeecCCCcccc-----------cCCcccccHHHHHHHHHHHhcc
Confidence 3445666667665443322222 2333 2366888898885431 122334566666666665522
Q ss_pred CCC-CcEEEEeeChHHHHHHHHHHhC------CCceeEEEecCCcccccccccccCCccch---hhc-CCC----CcHHH
Q 003878 615 TQS-RKLCIEGGSNGGLLVGACINQR------PDLFGCALAHVGVMDMLRYHKFTIGHAWV---SDF-GCS----EEEEE 679 (789)
Q Consensus 615 ~d~-~~i~i~G~S~GG~l~~~~~~~~------pd~f~a~v~~~p~~d~~~~~~~~~~~~~~---~e~-g~p----~~~~~ 679 (789)
..+ ...++.||||||+++..++-+. |..+=..-+..|..+-........-..+. .++ |.| +|+|.
T Consensus 70 ~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~i~~~~D~~~l~~l~~lgG~p~e~led~El 149 (244)
T COG3208 70 PLLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQIHHLDDADFLADLVDLGGTPPELLEDPEL 149 (244)
T ss_pred ccCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCCccCCCHHHHHHHHHHhCCCChHHhcCHHH
Confidence 222 4799999999999999887643 33233333445633321111100001111 122 444 44443
Q ss_pred HHHH--------HhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEE
Q 003878 680 FYWL--------IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIG 751 (789)
Q Consensus 680 ~~~l--------~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l 751 (789)
.+.+ +...-|...... ...+|+.++.|++|..|...+...|.+.. +....+
T Consensus 150 ~~l~LPilRAD~~~~e~Y~~~~~~--------pl~~pi~~~~G~~D~~vs~~~~~~W~~~t-------------~~~f~l 208 (244)
T COG3208 150 MALFLPILRADFRALESYRYPPPA--------PLACPIHAFGGEKDHEVSRDELGAWREHT-------------KGDFTL 208 (244)
T ss_pred HHHHHHHHHHHHHHhcccccCCCC--------CcCcceEEeccCcchhccHHHHHHHHHhh-------------cCCceE
Confidence 2211 111222222222 23689999999999999876655554443 456789
Q ss_pred EEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 752 RIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 752 ~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
+++ ++||++..... ..+++++.+.++
T Consensus 209 ~~f-dGgHFfl~~~~------~~v~~~i~~~l~ 234 (244)
T COG3208 209 RVF-DGGHFFLNQQR------EEVLARLEQHLA 234 (244)
T ss_pred EEe-cCcceehhhhH------HHHHHHHHHHhh
Confidence 998 57899864332 345556655554
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0033 Score=74.96 Aligned_cols=256 Identities=8% Similarity=-0.052 Sum_probs=140.3
Q ss_pred eEeCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCC-ceEEEEEEEEc
Q 003878 87 FKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSG-SDWATIKLMRI 165 (789)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g-~~~~~i~v~dl 165 (789)
.++|+++.|....++.++..|++++..+++ +|.+. +.. .. ..++|++||+.|.|+....+ ....++|..++
T Consensus 135 Spdg~~la~~~d~~G~E~~~l~v~d~~tg~--~l~~~--i~~---~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 135 TPDNTIMALAEDFLSRRQYGIRFRNLETGN--WYPEL--LDN---VE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred CCCCCEEEEEecCCCcEEEEEEEEECCCCC--CCCcc--ccC---cc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 457888999998888888899998865553 22111 111 11 45889999999999987433 24478999999
Q ss_pred CCCceecccc-cccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEe
Q 003878 166 EDQIVEADAL-SWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTH 244 (789)
Q Consensus 166 ~tg~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wsp 244 (789)
.|+......+ +.. ++ .+.-..|.+
T Consensus 207 gt~~~~d~lv~~e~----------------------~~---------------------------------~~~~~~~~s 231 (686)
T PRK10115 207 GTPASQDELVYEEK----------------------DD---------------------------------TFYVSLHKT 231 (686)
T ss_pred CCChhHCeEEEeeC----------------------CC---------------------------------CEEEEEEEc
Confidence 9983211111 110 00 011123444
Q ss_pred -CCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCC
Q 003878 245 -DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCD 323 (789)
Q Consensus 245 -Dg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 323 (789)
|++.+++..... ....+++........+...+...+.+..+ .+ ...+..+++.++.+ .
T Consensus 232 ~d~~~l~i~~~~~----------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~ly~~tn~~-~ 290 (686)
T PRK10115 232 TSKHYVVIHLASA----------------TTSEVLLLDAELADAEPFVFLPRRKDHEY--SL--DHYQHRFYLRSNRH-G 290 (686)
T ss_pred CCCCEEEEEEECC----------------ccccEEEEECcCCCCCceEEEECCCCCEE--EE--EeCCCEEEEEEcCC-C
Confidence 888887554322 22346666643322233344444333222 12 23456666666543 3
Q ss_pred CceEEEEEECCCCCCCcccccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEecc
Q 003878 324 PVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP 402 (789)
Q Consensus 324 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~ 402 (789)
.+..|..+++.+ + ..+..++... +.....+...+++|++..+.+ ...+|+.+++.++. ...+.-
T Consensus 291 ~~~~l~~~~~~~-~------------~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~-g~~~l~~~~~~~~~-~~~l~~ 355 (686)
T PRK10115 291 KNFGLYRTRVRD-E------------QQWEELIPPRENIMLEGFTLFTDWLVVEERQR-GLTSLRQINRKTRE-VIGIAF 355 (686)
T ss_pred CCceEEEecCCC-c------------ccCeEEECCCCCCEEEEEEEECCEEEEEEEeC-CEEEEEEEcCCCCc-eEEecC
Confidence 356787777763 1 1144444432 112222333467888887765 46789999986544 444431
Q ss_pred CCCCceeeeEEEe--cC-CEEEEEEEeC-CeEEEEEEECCCCce
Q 003878 403 EAERDVLESATAV--NL-NQMIVSYLSD-VKYVLQIRDLKNGSL 442 (789)
Q Consensus 403 ~~~~~~i~~v~~~--~~-~~lv~~~~~~-g~~~L~~~dl~tG~~ 442 (789)
..+ ..+..+..+ .+ +.+++....- ....++.+|+++++.
T Consensus 356 ~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~ 398 (686)
T PRK10115 356 DDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGER 398 (686)
T ss_pred CCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcE
Confidence 211 222222232 21 4555555443 356999999987653
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00015 Score=78.04 Aligned_cols=200 Identities=16% Similarity=0.095 Sum_probs=107.8
Q ss_pred CCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccc
Q 003878 128 DDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLY 207 (789)
Q Consensus 128 ~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 207 (789)
+++.+.+....|.|+.+....+.++.| ++++||+..-..-...|... + ..++
T Consensus 265 KGHia~lt~g~whP~~k~~FlT~s~Dg----tlRiWdv~~~k~q~qVik~k-----------------~---~~g~---- 316 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNKEEFLTCSYDG----TLRIWDVNNTKSQLQVIKTK-----------------P---AGGK---- 316 (641)
T ss_pred CCceeeeeccccccCcccceEEecCCC----cEEEEecCCchhheeEEeec-----------------c---CCCc----
Confidence 455677888899999999888777666 79999987543111111111 0 0000
Q ss_pred cccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC
Q 003878 208 LRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS 287 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~ 287 (789)
+....+-+|+|||+.|+-...+. .|..|+.+.-..
T Consensus 317 --------------------------Rv~~tsC~~nrdg~~iAagc~DG-------------------SIQ~W~~~~~~v 351 (641)
T KOG0772|consen 317 --------------------------RVPVTSCAWNRDGKLIAAGCLDG-------------------SIQIWDKGSRTV 351 (641)
T ss_pred --------------------------ccCceeeecCCCcchhhhcccCC-------------------ceeeeecCCccc
Confidence 11246789999999987544332 255556554333
Q ss_pred CcEEEEecCC-CCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEE
Q 003878 288 EDILCWKDPE-HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 366 (789)
Q Consensus 288 ~~~~~~~~~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 366 (789)
.....+.... ....+.++.||+||++|+-... ...+.+||+..-+.- ...+.-+...+......|
T Consensus 352 ~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~-----D~tLKvWDLrq~kkp---------L~~~tgL~t~~~~tdc~F 417 (641)
T KOG0772|consen 352 RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF-----DDTLKVWDLRQFKKP---------LNVRTGLPTPFPGTDCCF 417 (641)
T ss_pred ccceEeeeccCCCCceeEEEeccccchhhhccC-----CCceeeeeccccccc---------hhhhcCCCccCCCCcccc
Confidence 3322222221 1224678999999999985433 344778888763200 011222222333334568
Q ss_pred ecCCCEEEEEECC--CCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec
Q 003878 367 ANDDTVFTFLTNK--DAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN 416 (789)
Q Consensus 367 s~dG~~l~~~tn~--~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~ 416 (789)
|||.+.|+--+.. +...+.|+.+|..+-+....+.-. ...+-.+.|.+
T Consensus 418 SPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~--~aSvv~~~Whp 467 (641)
T KOG0772|consen 418 SPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS--TASVVRCLWHP 467 (641)
T ss_pred CCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--CceEEEEeecc
Confidence 9986544322221 223356888876654422222111 24455566665
|
|
| >TIGR03230 lipo_lipase lipoprotein lipase | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.6e-05 Score=86.29 Aligned_cols=113 Identities=9% Similarity=-0.060 Sum_probs=75.9
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHH-HHHHc-CCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRT-ILMRH-LGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG 613 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~-~~l~~-~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~ 613 (789)
...|++|++||..+......|..... .++.. ..+.|+++|.+|++.... ..+. .+-...-+++.+.+++|.+..
T Consensus 39 ~~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~y--~~a~--~~t~~vg~~la~lI~~L~~~~ 114 (442)
T TIGR03230 39 HETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQHY--PTSA--AYTKLVGKDVAKFVNWMQEEF 114 (442)
T ss_pred CCCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCCC--cccc--ccHHHHHHHHHHHHHHHHHhh
Confidence 45689999999655332233444332 34432 269999999998764321 1111 111112245666777777553
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 614 YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 614 ~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
..+.+++.++|||+||.+++.++.+.|++++.++...|.
T Consensus 115 gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPA 153 (442)
T TIGR03230 115 NYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPA 153 (442)
T ss_pred CCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCC
Confidence 357889999999999999999999999999999987764
|
Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity. |
| >COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00045 Score=63.83 Aligned_cols=166 Identities=14% Similarity=0.094 Sum_probs=96.8
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeec--CCCCCChhHHhcccccCCcchHHH-HHHHHHHHHHcCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIR--GGGEYGEEWHKGGALAKKQNCFDD-FISASEYLISAGY 614 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~R--G~g~~g~~~~~~~~~~~~~~~~~D-~~~~~~~L~~~~~ 614 (789)
.-+||+.||......++.... ....|+.+|+.|+.+++. -.--+|+ -+......+.++ .+.++..|.+.
T Consensus 14 ~~tilLaHGAGasmdSt~m~~-~a~~la~~G~~vaRfefpYma~Rrtg~-----rkPp~~~~t~~~~~~~~~aql~~~-- 85 (213)
T COG3571 14 PVTILLAHGAGASMDSTSMTA-VAAALARRGWLVARFEFPYMAARRTGR-----RKPPPGSGTLNPEYIVAIAQLRAG-- 85 (213)
T ss_pred CEEEEEecCCCCCCCCHHHHH-HHHHHHhCceeEEEeecchhhhccccC-----CCCcCccccCCHHHHHHHHHHHhc--
Confidence 346788899766555544443 344555599999999853 1111110 011222233333 34455555554
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEe-cCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCC
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA-HVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVR 693 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~-~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~ 693 (789)
.+...+++.|.||||-++.+++..----+.+.+| .+||.- -|.|+... ..++.
T Consensus 86 l~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfhp----------------pGKPe~~R----------t~HL~ 139 (213)
T COG3571 86 LAEGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFHP----------------PGKPEQLR----------TEHLT 139 (213)
T ss_pred ccCCceeeccccccchHHHHHHHhhcCCcceEEEecCccCC----------------CCCcccch----------hhhcc
Confidence 3456899999999999988877542111333333 233221 13343221 14555
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCC
Q 003878 694 RPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVG 762 (789)
Q Consensus 694 ~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~ 762 (789)
.+ .+|+||++|+.|..=.-.+...+ .. ..+++++...++.|...
T Consensus 140 gl----------~tPtli~qGtrD~fGtr~~Va~y-----~l----------s~~iev~wl~~adHDLk 183 (213)
T COG3571 140 GL----------KTPTLITQGTRDEFGTRDEVAGY-----AL----------SDPIEVVWLEDADHDLK 183 (213)
T ss_pred CC----------CCCeEEeecccccccCHHHHHhh-----hc----------CCceEEEEeccCccccc
Confidence 55 78999999999988665554221 12 56889999999999754
|
|
| >PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00028 Score=74.65 Aligned_cols=124 Identities=13% Similarity=0.048 Sum_probs=77.6
Q ss_pred EEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChh--HHhccc-----cc
Q 003878 521 KIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE--WHKGGA-----LA 593 (789)
Q Consensus 521 ~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~--~~~~~~-----~~ 593 (789)
+....++.|+.. .....|+.|+..|................++. .|+..++....=.|..-+. +..... ..
T Consensus 76 ~a~~~~~~P~~~-~~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~-~gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl~~ 153 (348)
T PF09752_consen 76 TARFQLLLPKRW-DSPYRPVCIHLAGTGDHGFWRRRRLMARPLLK-EGIASLILENPYYGQRKPKDQRRSSLRNVSDLFV 153 (348)
T ss_pred heEEEEEECCcc-ccCCCceEEEecCCCccchhhhhhhhhhHHHH-cCcceEEEecccccccChhHhhcccccchhHHHH
Confidence 445667788875 23568999999886443322222222346676 6998888763322211111 111000 01
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEec
Q 003878 594 KKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 649 (789)
Q Consensus 594 ~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~ 649 (789)
.+...+.+..+.+.||.++|+. ++++.|.||||.+|..+++..|.-..++-+.
T Consensus 154 ~g~~~i~E~~~Ll~Wl~~~G~~---~~g~~G~SmGG~~A~laa~~~p~pv~~vp~l 206 (348)
T PF09752_consen 154 MGRATILESRALLHWLEREGYG---PLGLTGISMGGHMAALAASNWPRPVALVPCL 206 (348)
T ss_pred HHhHHHHHHHHHHHHHHhcCCC---ceEEEEechhHhhHHhhhhcCCCceeEEEee
Confidence 1233456777889999999874 8999999999999999999999865544433
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.003 Score=63.38 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=86.1
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+++|||.|+.|+-..++. .+.++.-..+.=+-+.+.+++++. +-.++||++|.+|+-
T Consensus 64 VRsvAwsp~g~~La~aSFD~-------------------t~~Iw~k~~~efecv~~lEGHEnE--VK~Vaws~sG~~LAT 122 (312)
T KOG0645|consen 64 VRSVAWSPHGRYLASASFDA-------------------TVVIWKKEDGEFECVATLEGHENE--VKCVAWSASGNYLAT 122 (312)
T ss_pred eeeeeecCCCcEEEEeeccc-------------------eEEEeecCCCceeEEeeeeccccc--eeEEEEcCCCCEEEE
Confidence 57999999999998877764 222332222222224445665543 457899999999997
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND 396 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~ 396 (789)
.+.+ ..+|++.++.+. +.+.. ..+...+. +.....|.|..+ |++....+ ..-++|+-+. +..
T Consensus 123 CSRD-----KSVWiWe~dedd-Efec~------aVL~~Htq--DVK~V~WHPt~d-lL~S~SYD-nTIk~~~~~~--ddd 184 (312)
T KOG0645|consen 123 CSRD-----KSVWIWEIDEDD-EFECI------AVLQEHTQ--DVKHVIWHPTED-LLFSCSYD-NTIKVYRDED--DDD 184 (312)
T ss_pred eeCC-----CeEEEEEecCCC-cEEEE------eeeccccc--cccEEEEcCCcc-eeEEeccC-CeEEEEeecC--CCC
Confidence 7643 348888776421 11100 00111111 122345777443 45544433 2344554433 333
Q ss_pred eEEeccCCC-CceeeeEEEecCCEEEEEEEeCCeEEEEE
Q 003878 397 WFEVIPEAE-RDVLESATAVNLNQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 397 ~~~l~~~~~-~~~i~~v~~~~~~~lv~~~~~~g~~~L~~ 434 (789)
|..+-.-.. ...+-.+++.+.+.-+++.++++.-.|+.
T Consensus 185 W~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 185 WECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred eeEEEEecCccceEEEEEecCCCceEEEecCCcceEeee
Confidence 554332221 23566677777555667788887556655
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00051 Score=75.50 Aligned_cols=81 Identities=14% Similarity=0.024 Sum_probs=45.4
Q ss_pred EecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCCCceee
Q 003878 366 IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSLLH 444 (789)
Q Consensus 366 ~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~tG~~~~ 444 (789)
.+||++++++-+..+.....|.++|.++.+....+.+ .....+-.+.+++++ .++++.. +....|.++|.+|.+.+.
T Consensus 276 thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~-~~~~~~~h~ef~~dG~~v~vS~~-~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 276 THPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP-GPGKRVVHMEFNPDGKEVWVSVW-DGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp --TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH-HHT--EEEEEE-TTSSEEEEEEE---TTEEEEEETTTTEEEE
T ss_pred cCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec-cCCCcEeccEECCCCCEEEEEEe-cCCCEEEEEECCCcEEEE
Confidence 5789998887644433467899999887642223322 222235677888864 4555444 433389999999888777
Q ss_pred eccc
Q 003878 445 QLPI 448 (789)
Q Consensus 445 ~l~~ 448 (789)
+++.
T Consensus 354 ~i~~ 357 (369)
T PF02239_consen 354 RIPV 357 (369)
T ss_dssp EEE-
T ss_pred EEEe
Confidence 7663
|
... |
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0023 Score=73.83 Aligned_cols=235 Identities=10% Similarity=0.059 Sum_probs=138.2
Q ss_pred cEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccc
Q 003878 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 131 ~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
+..+..+.+.|||+.| ++....| .|++|+.-+-...|+.|... ++..+|+.
T Consensus 13 t~G~t~i~~d~~gefi-~tcgsdg----~ir~~~~~sd~e~P~ti~~~-----------------------g~~v~~ia- 63 (933)
T KOG1274|consen 13 TGGLTLICYDPDGEFI-CTCGSDG----DIRKWKTNSDEEEPETIDIS-----------------------GELVSSIA- 63 (933)
T ss_pred cCceEEEEEcCCCCEE-EEecCCC----ceEEeecCCcccCCchhhcc-----------------------CceeEEEe-
Confidence 3346678899999944 4554444 68888876654455444421 00011111
Q ss_pred ceeeEEEeeeccccceeeeeeec--------c--cccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEE
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVS--------Q--FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYH 280 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~--------~--~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (789)
-+...+.++.++++.++|..+- + +.....+++.+|+.++....+ ..|.+.
T Consensus 64 -~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD-------------------~~vK~~ 123 (933)
T KOG1274|consen 64 -CYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDD-------------------TAVKLL 123 (933)
T ss_pred -ecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCc-------------------eeEEEE
Confidence 0122355667888889998876 2 223567899999999876433 236666
Q ss_pred ECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec--c
Q 003878 281 FLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID--G 358 (789)
Q Consensus 281 ~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~--~ 358 (789)
++.+.. .+.++...+.+ +..+.++|.|..|+..+-+ ..|+++++.++... ..+..+.. +
T Consensus 124 ~~~D~s--~~~~lrgh~ap--Vl~l~~~p~~~fLAvss~d-----G~v~iw~~~~~~~~----------~tl~~v~k~n~ 184 (933)
T KOG1274|consen 124 NLDDSS--QEKVLRGHDAP--VLQLSYDPKGNFLAVSSCD-----GKVQIWDLQDGILS----------KTLTGVDKDNE 184 (933)
T ss_pred eccccc--hheeecccCCc--eeeeeEcCCCCEEEEEecC-----ceEEEEEcccchhh----------hhcccCCcccc
Confidence 665433 33444444433 5678999999999987754 44889999875311 00111111 1
Q ss_pred cc----ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEE
Q 003878 359 FD----AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 359 ~~----~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~ 434 (789)
+. ...+.|+|+|.+|++..-+ ..|..++.++.+....+.+......+..++|++++..++...-++ +|.+
T Consensus 185 ~~~s~i~~~~aW~Pk~g~la~~~~d----~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g--~I~v 258 (933)
T KOG1274|consen 185 FILSRICTRLAWHPKGGTLAVPPVD----NTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG--QILV 258 (933)
T ss_pred ccccceeeeeeecCCCCeEEeeccC----CeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCC--cEEE
Confidence 11 1225699998888876543 346666666543222333333233477788998655555555555 7889
Q ss_pred EECCC
Q 003878 435 RDLKN 439 (789)
Q Consensus 435 ~dl~t 439 (789)
||.++
T Consensus 259 Wnv~t 263 (933)
T KOG1274|consen 259 WNVDT 263 (933)
T ss_pred Eeccc
Confidence 99874
|
|
| >TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00027 Score=79.85 Aligned_cols=84 Identities=17% Similarity=0.115 Sum_probs=59.4
Q ss_pred HHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHH----HHHHHHHHcCCCCCCcEEEEeeChHHHHHHH-
Q 003878 560 RTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFI----SASEYLISAGYTQSRKLCIEGGSNGGLLVGA- 634 (789)
Q Consensus 560 ~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~----~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~- 634 (789)
+..+|.++|+.|++++.|.-+... ...+++|.+ +|++.+.+. +...+|-++|+|+||.+++.
T Consensus 239 lVr~lv~qG~~VflIsW~nP~~~~-----------r~~~ldDYv~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~ 305 (560)
T TIGR01839 239 FVQYCLKNQLQVFIISWRNPDKAH-----------REWGLSTYVDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAAL 305 (560)
T ss_pred HHHHHHHcCCeEEEEeCCCCChhh-----------cCCCHHHHHHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHH
Confidence 345555599999999998744321 223344444 455555443 55679999999999999886
Q ss_pred ---HHHhCCC-ceeEEEecCCccccc
Q 003878 635 ---CINQRPD-LFGCALAHVGVMDML 656 (789)
Q Consensus 635 ---~~~~~pd-~f~a~v~~~p~~d~~ 656 (789)
+++++++ +++.++..+..+|+.
T Consensus 306 ~a~~aA~~~~~~V~sltllatplDf~ 331 (560)
T TIGR01839 306 VGHLQALGQLRKVNSLTYLVSLLDST 331 (560)
T ss_pred HHHHHhcCCCCceeeEEeeecccccC
Confidence 6777786 799998887777753
|
This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00016 Score=76.95 Aligned_cols=199 Identities=14% Similarity=0.108 Sum_probs=120.5
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec-ccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
.+..+.+|||+++||++-. ..-|.+.-..|++.+. ..+++.
T Consensus 305 ~~e~FeVShd~~fia~~G~-----~G~I~lLhakT~eli~s~KieG~--------------------------------- 346 (514)
T KOG2055|consen 305 SMERFEVSHDSNFIAIAGN-----NGHIHLLHAKTKELITSFKIEGV--------------------------------- 346 (514)
T ss_pred hhheeEecCCCCeEEEccc-----CceEEeehhhhhhhhheeeeccE---------------------------------
Confidence 4678899999999997532 4579999999987543 223332
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
...++||.||+.|+.+.. ..+||.+++++.... -
T Consensus 347 -------------------------v~~~~fsSdsk~l~~~~~-------------------~GeV~v~nl~~~~~~--~ 380 (514)
T KOG2055|consen 347 -------------------------VSDFTFSSDSKELLASGG-------------------TGEVYVWNLRQNSCL--H 380 (514)
T ss_pred -------------------------EeeEEEecCCcEEEEEcC-------------------CceEEEEecCCcceE--E
Confidence 588999999999887632 227999999876332 2
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccE---eeeccccceeEEEec
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV---KLIDGFDAQYEVIAN 368 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~s~ 368 (789)
.|... ...+..+++.|++|+|++..+..+- |=++|..+--.. ..++|.. .++.. ...-.|+|
T Consensus 381 rf~D~-G~v~gts~~~S~ng~ylA~GS~~Gi-----VNIYd~~s~~~s-------~~PkPik~~dNLtt~--Itsl~Fn~ 445 (514)
T KOG2055|consen 381 RFVDD-GSVHGTSLCISLNGSYLATGSDSGI-----VNIYDGNSCFAS-------TNPKPIKTVDNLTTA--ITSLQFNH 445 (514)
T ss_pred EEeec-CccceeeeeecCCCceEEeccCcce-----EEEeccchhhcc-------CCCCchhhhhhhhee--eeeeeeCc
Confidence 33332 2334457889999999988764332 334443321000 0122222 22221 12234899
Q ss_pred CCCEEEEEECCCCCCceEEEEECCCCC---CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEE
Q 003878 369 DDTVFTFLTNKDAPKYKIIRVDLKEPN---DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 369 dG~~l~~~tn~~~~~~~L~~~dl~~~~---~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~ 434 (789)
|++.|++.++......+|+-+ .+.. +|-+. ..+-..+..+++++++..++.+.+.|+..||.
T Consensus 446 d~qiLAiaS~~~knalrLVHv--PS~TVFsNfP~~--n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 446 DAQILAIASRVKKNALRLVHV--PSCTVFSNFPTS--NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred chhhhhhhhhccccceEEEec--cceeeeccCCCC--CCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 999999988764434455544 3322 22111 12224467788888667777788888555543
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0002 Score=70.60 Aligned_cols=198 Identities=14% Similarity=0.162 Sum_probs=127.8
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
.-+..+++|.|.++|. .|+-..-++|+|+..-+.-+..+.+. .|
T Consensus 101 hivk~~af~~ds~~ll-----tgg~ekllrvfdln~p~App~E~~gh-------tg------------------------ 144 (334)
T KOG0278|consen 101 HIVKAVAFSQDSNYLL-----TGGQEKLLRVFDLNRPKAPPKEISGH-------TG------------------------ 144 (334)
T ss_pred heeeeEEecccchhhh-----ccchHHHhhhhhccCCCCCchhhcCC-------CC------------------------
Confidence 4577889999999987 45556689999998776555444443 11
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
....+.|-...+.|+-+.. ...|++|+..++.....+
T Consensus 145 ------------------------~Ir~v~wc~eD~~iLSSad-------------------d~tVRLWD~rTgt~v~sL 181 (334)
T KOG0278|consen 145 ------------------------GIRTVLWCHEDKCILSSAD-------------------DKTVRLWDHRTGTEVQSL 181 (334)
T ss_pred ------------------------cceeEEEeccCceEEeecc-------------------CCceEEEEeccCcEEEEE
Confidence 1467788888888875432 235889999887655544
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCC
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDT 371 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~ 371 (789)
-+..+ +.++..|+||++|.+.-. +.|-.+|..+.. . ++...-.....-...+|+.
T Consensus 182 ~~~s~-----VtSlEvs~dG~ilTia~g------ssV~Fwdaksf~----~---------lKs~k~P~nV~SASL~P~k- 236 (334)
T KOG0278|consen 182 EFNSP-----VTSLEVSQDGRILTIAYG------SSVKFWDAKSFG----L---------LKSYKMPCNVESASLHPKK- 236 (334)
T ss_pred ecCCC-----CcceeeccCCCEEEEecC------ceeEEecccccc----c---------eeeccCccccccccccCCC-
Confidence 44332 347889999999976531 336677776521 0 1110001111223367765
Q ss_pred EEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEEC
Q 003878 372 VFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 372 ~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl 437 (789)
.+++.. +..+.++++|..++++... .-......+-.+.+++++.+|++.++||.-+||....
T Consensus 237 ~~fVaG---ged~~~~kfDy~TgeEi~~-~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 237 EFFVAG---GEDFKVYKFDYNTGEEIGS-YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred ceEEec---CcceEEEEEeccCCceeee-cccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 566543 4468999999999873322 1122345678899999889999999999666666554
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00046 Score=70.62 Aligned_cols=93 Identities=13% Similarity=0.083 Sum_probs=56.7
Q ss_pred EEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCcee
Q 003878 365 VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLL 443 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~ 443 (789)
.|++|..++. +.|..-+ ..|+.+|+...+ ...++-+. ..|..+.|.++ -+|++.. |.++||.|.+. |-..
T Consensus 325 afs~Ds~y~a-Trnd~~P-nalW~Wdlq~l~-l~avLiQk--~piraf~WdP~~prL~vct---g~srLY~W~ps-g~~~ 395 (447)
T KOG4497|consen 325 AFSCDSTYAA-TRNDKYP-NALWLWDLQNLK-LHAVLIQK--HPIRAFEWDPGRPRLVVCT---GKSRLYFWAPS-GPRV 395 (447)
T ss_pred eecCCceEEe-eecCCCC-ceEEEEechhhh-hhhhhhhc--cceeEEEeCCCCceEEEEc---CCceEEEEcCC-CceE
Confidence 5888765544 4444445 479999998765 33333333 45778889884 3455543 44689999997 6433
Q ss_pred eecccCCeeEEEeecccCCcEEE
Q 003878 444 HQLPIEIGSVNAISARREDSVVF 466 (789)
Q Consensus 444 ~~l~~~~~~v~~~s~s~d~~~l~ 466 (789)
-.++.+...|..+.+.-+|+-++
T Consensus 396 V~vP~~GF~i~~l~W~~~g~~i~ 418 (447)
T KOG4497|consen 396 VGVPKKGFNIQKLQWLQPGEFIV 418 (447)
T ss_pred EecCCCCceeeeEEecCCCcEEE
Confidence 34444445566666666665443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0022 Score=69.74 Aligned_cols=167 Identities=12% Similarity=0.006 Sum_probs=81.4
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC----cEEE-EecCCCCeeEEEEEEecCCc
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE----DILC-WKDPEHPKYIFSGHVTEDGQ 312 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~----~~~~-~~~~~~~~~~~~~~~SpDG~ 312 (789)
..++++|||+.++.... ....|+++++.+...- ...+ ......+ ..+.++|||+
T Consensus 129 ~~~~~~p~g~~l~v~~~------------------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p---~~~~~~pdg~ 187 (330)
T PRK11028 129 HSANIDPDNRTLWVPCL------------------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGP---RHMVFHPNQQ 187 (330)
T ss_pred cEeEeCCCCCEEEEeeC------------------CCCEEEEEEECCCCcccccCCCceecCCCCCC---ceEEECCCCC
Confidence 56789999999987632 2346888888652210 0000 1111122 3578999999
Q ss_pred EEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee---ccc-ccee---EEEecCCCEEEEEECCCCCCce
Q 003878 313 YLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI---DGF-DAQY---EVIANDDTVFTFLTNKDAPKYK 385 (789)
Q Consensus 313 ~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~---~~~-~~~~---~~~s~dG~~l~~~tn~~~~~~~ 385 (789)
+++..... .+.|.+++++.....+ .....+. ... ...+ ..++|||+++|+ +++.. ..
T Consensus 188 ~lyv~~~~----~~~v~v~~~~~~~~~~---------~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv-~~~~~--~~ 251 (330)
T PRK11028 188 YAYCVNEL----NSSVDVWQLKDPHGEI---------ECVQTLDMMPADFSDTRWAADIHITPDGRHLYA-CDRTA--SL 251 (330)
T ss_pred EEEEEecC----CCEEEEEEEeCCCCCE---------EEEEEEecCCCcCCCCccceeEEECCCCCEEEE-ecCCC--Ce
Confidence 99876432 3567777775311010 0011110 000 0111 237899998886 45533 35
Q ss_pred EEEEECCCCCCeEEeccCCC-CceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCCCc
Q 003878 386 IIRVDLKEPNDWFEVIPEAE-RDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGS 441 (789)
Q Consensus 386 L~~~dl~~~~~~~~l~~~~~-~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~tG~ 441 (789)
|..++++.......++.... ......+.+++++ +|+++...++.-.++.++.++|.
T Consensus 252 I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~ 309 (330)
T PRK11028 252 ISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGL 309 (330)
T ss_pred EEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCc
Confidence 66666543220111221110 0122356777654 55555544443344444444454
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.015 Score=61.65 Aligned_cols=117 Identities=13% Similarity=0.200 Sum_probs=70.5
Q ss_pred EEEecCCCEEEEEECCCCCCceEEEEECCCCC-----CeEEeccCC--CC---ceeeeEEEec-CCEEEEEEEeC-----
Q 003878 364 EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-----DWFEVIPEA--ER---DVLESATAVN-LNQMIVSYLSD----- 427 (789)
Q Consensus 364 ~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~-----~~~~l~~~~--~~---~~i~~v~~~~-~~~lv~~~~~~----- 427 (789)
+.++.++.+++|.|-. +.|+.+++.+.+ .|..+.... +. .-.+-+++.+ .++||+.--..
T Consensus 189 ~~~~~~~~~~~F~Sy~----G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsH 264 (342)
T PF06433_consen 189 PAYSRDGGRLYFVSYE----GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSH 264 (342)
T ss_dssp -EEETTTTEEEEEBTT----SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-T
T ss_pred cceECCCCeEEEEecC----CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCc
Confidence 3456677788887653 689999987754 122121110 00 0123355654 36888765432
Q ss_pred --CeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 428 --VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 428 --g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+-.+||++|+++++.+.+++++. .+.+++.+.|.+-++|..+. .-..++.+|..+|+
T Consensus 265 KdpgteVWv~D~~t~krv~Ri~l~~-~~~Si~Vsqd~~P~L~~~~~--~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 265 KDPGTEVWVYDLKTHKRVARIPLEH-PIDSIAVSQDDKPLLYALSA--GDGTLDVYDAATGK 323 (342)
T ss_dssp TS-EEEEEEEETTTTEEEEEEEEEE-EESEEEEESSSS-EEEEEET--TTTEEEEEETTT--
T ss_pred cCCceEEEEEECCCCeEEEEEeCCC-ccceEEEccCCCcEEEEEcC--CCCeEEEEeCcCCc
Confidence 23599999999999888888752 23356666777666666543 34689999999996
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00061 Score=75.58 Aligned_cols=199 Identities=8% Similarity=0.043 Sum_probs=121.3
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
+.++.|+++|+.|++..... .+.++++.+.... .-+... +...+..++|. ..++.
T Consensus 220 vtSv~ws~~G~~LavG~~~g-------------------~v~iwD~~~~k~~--~~~~~~-h~~rvg~laW~---~~~ls 274 (484)
T KOG0305|consen 220 VTSVKWSPDGSHLAVGTSDG-------------------TVQIWDVKEQKKT--RTLRGS-HASRVGSLAWN---SSVLS 274 (484)
T ss_pred eEEEEECCCCCEEEEeecCC-------------------eEEEEehhhcccc--ccccCC-cCceeEEEecc---CceEE
Confidence 58999999999999875432 4677776543221 111111 34556678887 23333
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee--EEEecCCCEEEEEECCCCCCceEEEEECCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY--EVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 394 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~ 394 (789)
... + ...|...|+.....- ...+ .+-..+. -.|++|+..++ .++.+..++.+|....
T Consensus 275 sGs-r---~~~I~~~dvR~~~~~------------~~~~-~~H~qeVCgLkws~d~~~lA----SGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 275 SGS-R---DGKILNHDVRISQHV------------VSTL-QGHRQEVCGLKWSPDGNQLA----SGGNDNVVFIWDGLSP 333 (484)
T ss_pred Eec-C---CCcEEEEEEecchhh------------hhhh-hcccceeeeeEECCCCCeec----cCCCccceEeccCCCc
Confidence 322 2 244666676553100 1101 1111112 23999999887 3445678999998555
Q ss_pred CCeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCC
Q 003878 395 NDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFL 473 (789)
Q Consensus 395 ~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~ 473 (789)
+....+..+. ..+..++|.+ ...|++++..-....|.+||..+|+.+..+.- ...|..+.|++..+++..+..-..
T Consensus 334 ~p~~~~~~H~--aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~ 410 (484)
T KOG0305|consen 334 EPKFTFTEHT--AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSE 410 (484)
T ss_pred cccEEEeccc--eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCC
Confidence 4345566665 5678888887 35677776555556899999998887555542 456788999999999887664433
Q ss_pred CCcEEEEEECCCC
Q 003878 474 IPGIVYQCNLKTE 486 (789)
Q Consensus 474 ~P~~ly~~dl~tg 486 (789)
. .+.+|+..+.
T Consensus 411 n--~i~lw~~ps~ 421 (484)
T KOG0305|consen 411 N--QITLWKYPSM 421 (484)
T ss_pred C--cEEEEecccc
Confidence 3 5555555444
|
|
| >PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00022 Score=70.71 Aligned_cols=214 Identities=15% Similarity=0.166 Sum_probs=111.4
Q ss_pred ecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccccc
Q 003878 514 PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 593 (789)
Q Consensus 514 ~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~ 593 (789)
.-.+| .+|.+|--.|+... ..++|+||..-| |+..+. .|.+ .+..|..+||.|+.+|.--.=+. .+ +.
T Consensus 8 ~~~~~-~~I~vwet~P~~~~-~~~~~tiliA~G-f~rrmd-h~ag-LA~YL~~NGFhViRyDsl~HvGl-----Ss--G~ 75 (294)
T PF02273_consen 8 RLEDG-RQIRVWETRPKNNE-PKRNNTILIAPG-FARRMD-HFAG-LAEYLSANGFHVIRYDSLNHVGL-----SS--GD 75 (294)
T ss_dssp EETTT-EEEEEEEE---TTS----S-EEEEE-T-T-GGGG-GGHH-HHHHHHTTT--EEEE---B---------------
T ss_pred EcCCC-CEEEEeccCCCCCC-cccCCeEEEecc-hhHHHH-HHHH-HHHHHhhCCeEEEeccccccccC-----CC--CC
Confidence 34689 99999999999743 467788888877 554433 4444 45556669999999974311000 00 11
Q ss_pred CCcc----hHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCc----
Q 003878 594 KKQN----CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGH---- 665 (789)
Q Consensus 594 ~~~~----~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~---- 665 (789)
-.+- .-+|+..+++||...|. .+++++-.|.-|-++..+++. ++ ..-.|..+|++|+..+..-..+.
T Consensus 76 I~eftms~g~~sL~~V~dwl~~~g~---~~~GLIAaSLSaRIAy~Va~~-i~-lsfLitaVGVVnlr~TLe~al~~Dyl~ 150 (294)
T PF02273_consen 76 INEFTMSIGKASLLTVIDWLATRGI---RRIGLIAASLSARIAYEVAAD-IN-LSFLITAVGVVNLRDTLEKALGYDYLQ 150 (294)
T ss_dssp -----HHHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTT-S---SEEEEES--S-HHHHHHHHHSS-GGG
T ss_pred hhhcchHHhHHHHHHHHHHHHhcCC---CcchhhhhhhhHHHHHHHhhc-cC-cceEEEEeeeeeHHHHHHHHhccchhh
Confidence 1111 23788899999998875 579999999999999999996 65 66777788999987654211111
Q ss_pred cchhhc-------CCCCcHHHH--HHHH-hc----CcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHH
Q 003878 666 AWVSDF-------GCSEEEEEF--YWLI-KY----SPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLAT 731 (789)
Q Consensus 666 ~~~~e~-------g~p~~~~~~--~~l~-~~----sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~ 731 (789)
.+..+. |-.-+.+.| +.++ .+ |-...++.. ..|++.+++.+|.-|-..+..++...
T Consensus 151 ~~i~~lp~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l----------~iP~iaF~A~~D~WV~q~eV~~~~~~ 220 (294)
T PF02273_consen 151 LPIEQLPEDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRL----------SIPFIAFTANDDDWVKQSEVEELLDN 220 (294)
T ss_dssp S-GGG--SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT------------S-EEEEEETT-TTS-HHHHHHHHTT
T ss_pred cchhhCCCcccccccccchHHHHHHHHHcCCccchhHHHHHhhC----------CCCEEEEEeCCCccccHHHHHHHHHh
Confidence 111111 111111111 0011 11 122334443 67999999999999988877776655
Q ss_pred HHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchh
Q 003878 732 MQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQ 766 (789)
Q Consensus 732 L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~ 766 (789)
+. ...+.++..+|++|-.+...-
T Consensus 221 ~~------------s~~~klysl~Gs~HdL~enl~ 243 (294)
T PF02273_consen 221 IN------------SNKCKLYSLPGSSHDLGENLV 243 (294)
T ss_dssp -T------------T--EEEEEETT-SS-TTSSHH
T ss_pred cC------------CCceeEEEecCccchhhhChH
Confidence 54 345788999999998875433
|
Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B. |
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0026 Score=67.62 Aligned_cols=198 Identities=17% Similarity=0.200 Sum_probs=118.6
Q ss_pred ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 236 ~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
+...+.++||.+.++.... ...|++|..+......... ..+.+ +..+...|.|+|++
T Consensus 263 ki~~v~~~~~~~~v~~aSa-------------------d~~i~vws~~~~s~~~~~~--~h~~~--V~~ls~h~tgeYll 319 (506)
T KOG0289|consen 263 KITSVKFHKDLDTVITASA-------------------DEIIRVWSVPLSSEPTSSR--PHEEP--VTGLSLHPTGEYLL 319 (506)
T ss_pred EEEEEEeccchhheeecCC-------------------cceEEeeccccccCccccc--ccccc--ceeeeeccCCcEEE
Confidence 3567788888777664321 2347777777654332221 11222 34677889999998
Q ss_pred EEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc-cccee--EEEecCCCEEEEEECCCCCCceEEEEECC
Q 003878 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FDAQY--EVIANDDTVFTFLTNKDAPKYKIIRVDLK 392 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~-~~~~~--~~~s~dG~~l~~~tn~~~~~~~L~~~dl~ 392 (789)
-.++++. +-.-|..++. .+.....+ .+..+ ..+.|||-. |.+ +.+++.|-.+|++
T Consensus 320 sAs~d~~-----w~Fsd~~~g~-------------~lt~vs~~~s~v~~ts~~fHpDgLi--fgt--gt~d~~vkiwdlk 377 (506)
T KOG0289|consen 320 SASNDGT-----WAFSDISSGS-------------QLTVVSDETSDVEYTSAAFHPDGLI--FGT--GTPDGVVKIWDLK 377 (506)
T ss_pred EecCCce-----EEEEEccCCc-------------EEEEEeeccccceeEEeeEcCCceE--Eec--cCCCceEEEEEcC
Confidence 7664432 3334555531 12222221 22233 347888743 333 3467889999999
Q ss_pred CCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEeecccCCcEEEEEEcC
Q 003878 393 EPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFTS 471 (789)
Q Consensus 393 ~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s~d~~~l~~~~ss 471 (789)
++.... -+|. ....+..++++.+++.++...+++ .|.+||+..-+..+.+.++ ...+..++++..|..+.+.
T Consensus 378 s~~~~a-~Fpg-ht~~vk~i~FsENGY~Lat~add~--~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~--- 450 (506)
T KOG0289|consen 378 SQTNVA-KFPG-HTGPVKAISFSENGYWLATAADDG--SVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA--- 450 (506)
T ss_pred Cccccc-cCCC-CCCceeEEEeccCceEEEEEecCC--eEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee---
Confidence 876322 3343 246789999998788888888887 4999999744444556655 2345678888888877655
Q ss_pred CCCCcEEEEEECCCC
Q 003878 472 FLIPGIVYQCNLKTE 486 (789)
Q Consensus 472 ~~~P~~ly~~dl~tg 486 (789)
.+--.+|.++-.+.
T Consensus 451 -g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 451 -GSDLQVYICKKKTK 464 (506)
T ss_pred -cceeEEEEEecccc
Confidence 22335666664444
|
|
| >PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.001 Score=72.99 Aligned_cols=102 Identities=18% Similarity=0.217 Sum_probs=65.9
Q ss_pred CCccEEEE----EcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHH
Q 003878 536 GSHPCLLY----GYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLIS 611 (789)
Q Consensus 536 ~~~P~ll~----~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~ 611 (789)
.+.|.||. +|| +|+..-.. ..+....|. .|.-|..+-+.--.+- ..+++|+..+....++
T Consensus 67 ~krP~vViDPRAGHG-pGIGGFK~-dSevG~AL~-~GHPvYFV~F~p~P~p-------------gQTl~DV~~ae~~Fv~ 130 (581)
T PF11339_consen 67 TKRPFVVIDPRAGHG-PGIGGFKP-DSEVGVALR-AGHPVYFVGFFPEPEP-------------GQTLEDVMRAEAAFVE 130 (581)
T ss_pred CCCCeEEeCCCCCCC-CCccCCCc-ccHHHHHHH-cCCCeEEEEecCCCCC-------------CCcHHHHHHHHHHHHH
Confidence 45677665 465 44433333 335566676 7988887776543332 3467777665433322
Q ss_pred c---CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEe-cCCcc
Q 003878 612 A---GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA-HVGVM 653 (789)
Q Consensus 612 ~---~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~-~~p~~ 653 (789)
. -.-+..|..++|.+.||..++.+++.+||++.-+|+ .+|+.
T Consensus 131 ~V~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPls 176 (581)
T PF11339_consen 131 EVAERHPDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLS 176 (581)
T ss_pred HHHHhCCCCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCcc
Confidence 1 122334999999999999999999999999877654 45544
|
Their function is unknown. |
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00036 Score=76.59 Aligned_cols=222 Identities=18% Similarity=0.179 Sum_probs=124.2
Q ss_pred CCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceeccc-ccccccccccCccceeeeeeccccccccccccc
Q 003878 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLY 207 (789)
Q Consensus 129 ~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 207 (789)
+++..+.++++.|-|.+|| +|++..+++||.+.||..+... +..
T Consensus 398 GHtg~Vr~iSvdp~G~wla-----sGsdDGtvriWEi~TgRcvr~~~~d~------------------------------ 442 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLA-----SGSDDGTVRIWEIATGRCVRTVQFDS------------------------------ 442 (733)
T ss_pred ccCCeEEEEEecCCcceee-----ecCCCCcEEEEEeecceEEEEEeecc------------------------------
Confidence 4556688999999999999 7888999999999999765311 111
Q ss_pred cccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCC---CCCCCC----C--------ccccCC
Q 003878 208 LRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKE---GKDMDA----G--------TETDSN 272 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~---~~~~~~----~--------~~~~~~ 272 (789)
....++|.|.++.=+......... .+.+++ + ...++.
T Consensus 443 ----------------------------~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~ 494 (733)
T KOG0650|consen 443 ----------------------------EIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESE 494 (733)
T ss_pred ----------------------------eeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccC
Confidence 147888888775422221111100 011110 0 001122
Q ss_pred cccEEEEEECCCCCCC--cE-EEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCC
Q 003878 273 LYHEFYYHFLGTKQSE--DI-LCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL 349 (789)
Q Consensus 273 ~~~~i~~~~lg~~~~~--~~-~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 349 (789)
.+.++..|.-+..... .+ ++.. ++..+..+.|..+|.||+.....+. +..|++-.+..... .
T Consensus 495 p~~~~~~W~~~~~~e~~~~v~~~I~---~~k~i~~vtWHrkGDYlatV~~~~~--~~~VliHQLSK~~s----------Q 559 (733)
T KOG0650|consen 495 PDAAVVTWSRASLDELEKGVCIVIK---HPKSIRQVTWHRKGDYLATVMPDSG--NKSVLIHQLSKRKS----------Q 559 (733)
T ss_pred CcccceeechhhhhhhccceEEEEe---cCCccceeeeecCCceEEEeccCCC--cceEEEEecccccc----------c
Confidence 2334555554422111 11 2222 2334568899999999998775544 56788888876321 1
Q ss_pred CccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec-CCEEEEEEEeCC
Q 003878 350 LPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDV 428 (789)
Q Consensus 350 ~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g 428 (789)
.|+.+. .+. .....|.|...+|++.|.+ .|..+|+....-.+.+.+.. ..|.++++.+ ++.|++...+.
T Consensus 560 ~PF~ks-kG~-vq~v~FHPs~p~lfVaTq~-----~vRiYdL~kqelvKkL~tg~--kwiS~msihp~GDnli~gs~d~- 629 (733)
T KOG0650|consen 560 SPFRKS-KGL-VQRVKFHPSKPYLFVATQR-----SVRIYDLSKQELVKKLLTGS--KWISSMSIHPNGDNLILGSYDK- 629 (733)
T ss_pred Cchhhc-CCc-eeEEEecCCCceEEEEecc-----ceEEEehhHHHHHHHHhcCC--eeeeeeeecCCCCeEEEecCCC-
Confidence 122111 111 1223366665666665533 46666776643234455554 4577888876 36677655544
Q ss_pred eEEEEEEECCCC
Q 003878 429 KYVLQIRDLKNG 440 (789)
Q Consensus 429 ~~~L~~~dl~tG 440 (789)
++..+|++-+
T Consensus 630 --k~~WfDldls 639 (733)
T KOG0650|consen 630 --KMCWFDLDLS 639 (733)
T ss_pred --eeEEEEcccC
Confidence 6788888633
|
|
| >KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.3e-05 Score=77.91 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=97.9
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHh
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 588 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~ 588 (789)
++.++++.|| -+|...++-.+........-+|+.+-|.-|.-.-.-. ..-++ .||.|+-.|..|.++.-
T Consensus 215 ~R~kiks~dg-neiDtmF~d~r~n~~~ngq~LvIC~EGNAGFYEvG~m----~tP~~-lgYsvLGwNhPGFagST----- 283 (517)
T KOG1553|consen 215 QRLKIKSSDG-NEIDTMFLDGRPNQSGNGQDLVICFEGNAGFYEVGVM----NTPAQ-LGYSVLGWNHPGFAGST----- 283 (517)
T ss_pred eEEEEeecCC-cchhheeecCCCCCCCCCceEEEEecCCccceEeeee----cChHH-hCceeeccCCCCccccC-----
Confidence 6778899999 9998777765543333344677777775332111111 12234 89999999999865421
Q ss_pred cccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc
Q 003878 589 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH 659 (789)
Q Consensus 589 ~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~ 659 (789)
-.....|+..-..+++++.|..---.++.|+++|+|-||+-++++|..+|| .+|+|+.+-|-|++-..
T Consensus 284 --G~P~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllpLA 351 (517)
T KOG1553|consen 284 --GLPYPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLPLA 351 (517)
T ss_pred --CCCCcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhhHH
Confidence 123445666667788899887744477899999999999999999999998 69999999988876543
|
|
| >COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00014 Score=77.03 Aligned_cols=239 Identities=13% Similarity=0.066 Sum_probs=126.1
Q ss_pred EecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEee--cCCCCCChhHHhcc
Q 003878 513 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANI--RGGGEYGEEWHKGG 590 (789)
Q Consensus 513 ~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~--RG~g~~g~~~~~~~ 590 (789)
+....+ ..+...+..|++....++.|+++..||.......... ....++..++.++..+. +|....-.......
T Consensus 25 ~~~~~~-~~~~~~l~~p~~~~~~~~~p~v~~~h~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 100 (299)
T COG1073 25 LANRTG-IALAAVLHLPPSGNEEKKLPAVVFLHGFGSSKEQSLG---YAVLLAEKGYRVLAGDASLFGESGGDPRGLADS 100 (299)
T ss_pred cccccC-ceeeeEEEecCCCCccccCceEEeccCccccccCcch---HHHHhhhceeEEeeeccccccccccccccccCc
Confidence 333444 5677888888875444689999999996554433222 23455557887776654 21111110000000
Q ss_pred cccCCcchHHHHHHHHHHH---------HHcCCCCCCcEEEEeeChHHHHHHHHHHhCC---CceeEEEecCCccccccc
Q 003878 591 ALAKKQNCFDDFISASEYL---------ISAGYTQSRKLCIEGGSNGGLLVGACINQRP---DLFGCALAHVGVMDMLRY 658 (789)
Q Consensus 591 ~~~~~~~~~~D~~~~~~~L---------~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p---d~f~a~v~~~p~~d~~~~ 658 (789)
. ....++....... .........+....|.+.||..+...+...+ +..+.++...++-.....
T Consensus 101 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~g~~~~~ 175 (299)
T COG1073 101 E-----GYAEDFSAAVLLLLSEGVLDKDYRLLGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGESLGGALAL 175 (299)
T ss_pred c-----ccccccchhheeeeccccccHHHHHHhhhcCcceEEEEEeeccchHHHhhcchhHHHhhcccceeeccCceeec
Confidence 0 0001111100000 0001112357888888888888777777665 222222222221111111
Q ss_pred cccc--------CCccch------h------hcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCC
Q 003878 659 HKFT--------IGHAWV------S------DFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDD 718 (789)
Q Consensus 659 ~~~~--------~~~~~~------~------e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~ 718 (789)
.... ...... . .+..+.. . ...+..++++..+..+ ...|+|++||.+|.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~d~~~~~~~i---------~~~P~l~~~G~~D~ 244 (299)
T COG1073 176 LLLGANPELARELIDYLITPGGFAPLPAPEAPLDTLPL-R-AVLLLLLDPFDDAEKI---------SPRPVLLVHGERDE 244 (299)
T ss_pred cccccchHHHHhhhhhhccCCCCCCCCccccccccccc-c-hhhhccCcchhhHhhc---------CCcceEEEecCCCc
Confidence 0000 000000 0 0000000 1 1224555666666665 12699999999999
Q ss_pred CCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCC-chhhHHHHHHHHHHHHHHHh
Q 003878 719 RVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL-PTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 719 ~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~-~~~~~~~~~~~~~~fl~~~l 783 (789)
.||..++.+++.+.+. .+..+.++++++|.... ......+...++..||.+++
T Consensus 245 ~vp~~~~~~~~~~~~~------------~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~~~l 298 (299)
T COG1073 245 VVPLRDAEDLYEAARE------------RPKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLERHL 298 (299)
T ss_pred ccchhhhHHHHhhhcc------------CCceEEEecCCccccccCccHHHHHHHHHHHHHHHHhc
Confidence 9999999999988764 26678888999998764 22222467788899998875
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0017 Score=65.95 Aligned_cols=195 Identities=14% Similarity=0.106 Sum_probs=118.0
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
.....|+|||..|+- .+..++|++|+.-.+- +...+.. .+...+..+.|++||+.|+-
T Consensus 50 I~~~~F~P~gs~~aS-------------------gG~Dr~I~LWnv~gdc-eN~~~lk--gHsgAVM~l~~~~d~s~i~S 107 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFAS-------------------GGSDRAIVLWNVYGDC-ENFWVLK--GHSGAVMELHGMRDGSHILS 107 (338)
T ss_pred EEEEEECCCCCeEee-------------------cCCcceEEEEeccccc-cceeeec--cccceeEeeeeccCCCEEEE
Confidence 567889999988873 3456789999975443 2333333 34566789999999999975
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEec--CCCEEEEEECCCCCCceEEEEECCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAN--DDTVFTFLTNKDAPKYKIIRVDLKEP 394 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~--dG~~l~~~tn~~~~~~~L~~~dl~~~ 394 (789)
... ...++.+|+++|.. ..+...... ......| -|..++. + ..++..+.++|+.+.
T Consensus 108 ~gt-----Dk~v~~wD~~tG~~-------------~rk~k~h~~-~vNs~~p~rrg~~lv~-S--gsdD~t~kl~D~R~k 165 (338)
T KOG0265|consen 108 CGT-----DKTVRGWDAETGKR-------------IRKHKGHTS-FVNSLDPSRRGPQLVC-S--GSDDGTLKLWDIRKK 165 (338)
T ss_pred ecC-----CceEEEEeccccee-------------eehhccccc-eeeecCccccCCeEEE-e--cCCCceEEEEeeccc
Confidence 543 35699999998631 111111111 1111223 2433332 2 234678888998765
Q ss_pred CCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCC
Q 003878 395 NDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLI 474 (789)
Q Consensus 395 ~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~ 474 (789)
+..+ .+ +. ...+.++.|.....-+++..-|+ .|.+||+..+.....+......|.+++.++++..+. |-..
T Consensus 166 ~~~~-t~-~~-kyqltAv~f~d~s~qv~sggIdn--~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~ll----snsM 236 (338)
T KOG0265|consen 166 EAIK-TF-EN-KYQLTAVGFKDTSDQVISGGIDN--DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLL----SNSM 236 (338)
T ss_pred chhh-cc-cc-ceeEEEEEecccccceeeccccC--ceeeeccccCcceEEeecccCceeeEEeccCCCccc----cccc
Confidence 5222 22 22 24577888775433444444443 789999965555456665667788899899887544 2234
Q ss_pred CcEEEEEECC
Q 003878 475 PGIVYQCNLK 484 (789)
Q Consensus 475 P~~ly~~dl~ 484 (789)
-.++.++|..
T Consensus 237 d~tvrvwd~r 246 (338)
T KOG0265|consen 237 DNTVRVWDVR 246 (338)
T ss_pred cceEEEEEec
Confidence 4567777764
|
|
| >PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.6e-05 Score=77.15 Aligned_cols=168 Identities=18% Similarity=0.105 Sum_probs=77.6
Q ss_pred CccEEEEEcCCCCccCCCCCCH---HHHHHHHcCCeEEEEEeec--C--CC----------------CCChhHHhccccc
Q 003878 537 SHPCLLYGYGGFNISVTPSFSV---SRTILMRHLGAVFCIANIR--G--GG----------------EYGEEWHKGGALA 593 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~---~~~~~l~~~G~~v~~~~~R--G--~g----------------~~g~~~~~~~~~~ 593 (789)
+.|-||.+||...+.. .|.. .+...|.+.++-++.+|-. - +. +-...|......
T Consensus 3 ~k~riLcLHG~~~na~--if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~- 79 (212)
T PF03959_consen 3 RKPRILCLHGYGQNAE--IFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDD- 79 (212)
T ss_dssp ---EEEEE--TT--HH--HHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S--
T ss_pred CCceEEEeCCCCcCHH--HHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCC-
Confidence 4578999999644321 2221 2344555227777777632 1 11 112234433221
Q ss_pred CCcchHHHHHHHHHHHH----HcCCCCCCcEEEEeeChHHHHHHHHHHhC--------CCceeEEEecCCcccccccccc
Q 003878 594 KKQNCFDDFISASEYLI----SAGYTQSRKLCIEGGSNGGLLVGACINQR--------PDLFGCALAHVGVMDMLRYHKF 661 (789)
Q Consensus 594 ~~~~~~~D~~~~~~~L~----~~~~~d~~~i~i~G~S~GG~l~~~~~~~~--------pd~f~a~v~~~p~~d~~~~~~~ 661 (789)
.....++..++++|. ++|- =.+|+|+|.||.+++.++.+. .-.|+.+|+.+++.-....
T Consensus 80 --~~~~~~~~~sl~~l~~~i~~~GP----fdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~--- 150 (212)
T PF03959_consen 80 --DHEYEGLDESLDYLRDYIEENGP----FDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD--- 150 (212)
T ss_dssp --SGGG---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE----
T ss_pred --cccccCHHHHHHHHHHHHHhcCC----eEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh---
Confidence 223444445544444 3332 479999999999998877531 1247888877775431110
Q ss_pred cCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCC
Q 003878 662 TIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLE 741 (789)
Q Consensus 662 ~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~ 741 (789)
+.+...... ...|+|.++|.+|..+++..+.++++....
T Consensus 151 ------------------------~~~~~~~~~----------i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~------- 189 (212)
T PF03959_consen 151 ------------------------YQELYDEPK----------ISIPTLHVIGENDPVVPPERSEALAEMFDP------- 189 (212)
T ss_dssp ------------------------GTTTT--TT-------------EEEEEEETT-SSS-HHHHHHHHHHHHH-------
T ss_pred ------------------------hhhhhcccc----------CCCCeEEEEeCCCCCcchHHHHHHHHhccC-------
Confidence 111111111 257999999999999999999999888775
Q ss_pred CCCCCCcEEEEEeCCCCcCCCCc
Q 003878 742 NSPQTNPIIGRIERKAGHGVGLP 764 (789)
Q Consensus 742 ~~~~~~~~~l~~~~~~gH~~~~~ 764 (789)
. ..++.. ++||.+...
T Consensus 190 ----~--~~v~~h-~gGH~vP~~ 205 (212)
T PF03959_consen 190 ----D--ARVIEH-DGGHHVPRK 205 (212)
T ss_dssp ----H--EEEEEE-SSSSS----
T ss_pred ----C--cEEEEE-CCCCcCcCC
Confidence 1 355555 688987543
|
It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A. |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0098 Score=72.78 Aligned_cols=192 Identities=15% Similarity=0.103 Sum_probs=103.1
Q ss_pred cceEEEEe-CCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEE-ecCCcEE
Q 003878 237 FSSIAWTH-DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHV-TEDGQYL 314 (789)
Q Consensus 237 ~~~~~wsp-Dg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-SpDG~~l 314 (789)
..+++|+| |+..|+-... ...|.+|++.+... ...+... ..+..+.| +++|.+|
T Consensus 578 V~~l~~~p~~~~~L~Sgs~-------------------Dg~v~iWd~~~~~~--~~~~~~~---~~v~~v~~~~~~g~~l 633 (793)
T PLN00181 578 VWSIDYSSADPTLLASGSD-------------------DGSVKLWSINQGVS--IGTIKTK---ANICCVQFPSESGRSL 633 (793)
T ss_pred EEEEEEcCCCCCEEEEEcC-------------------CCEEEEEECCCCcE--EEEEecC---CCeEEEEEeCCCCCEE
Confidence 46889997 6666654422 23588999876432 2222221 12446677 4578888
Q ss_pred EEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce-eEEEecCCCEEEEEECCCCCCceEEEEECCC
Q 003878 315 VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKE 393 (789)
Q Consensus 315 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~ 393 (789)
+..+. ...|+++|+.+.. .+...+....... ...|. ++..|+..+ .+..|..+|+..
T Consensus 634 atgs~-----dg~I~iwD~~~~~------------~~~~~~~~h~~~V~~v~f~-~~~~lvs~s----~D~~ikiWd~~~ 691 (793)
T PLN00181 634 AFGSA-----DHKVYYYDLRNPK------------LPLCTMIGHSKTVSYVRFV-DSSTLVSSS----TDNTLKLWDLSM 691 (793)
T ss_pred EEEeC-----CCeEEEEECCCCC------------ccceEecCCCCCEEEEEEe-CCCEEEEEE----CCCEEEEEeCCC
Confidence 77653 3569999987631 1122222211111 22254 566655433 235688888764
Q ss_pred CC------CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeee--------c---cc--CCeeEE
Q 003878 394 PN------DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQ--------L---PI--EIGSVN 454 (789)
Q Consensus 394 ~~------~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~--------l---~~--~~~~v~ 454 (789)
+. ....+..+. ..+..+.+++++.++++...++ .|++|+...+..... + .. ....|.
T Consensus 692 ~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~--~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~ 767 (793)
T PLN00181 692 SISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETN--EVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFIS 767 (793)
T ss_pred CccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCC--EEEEEECCCCCceEEEecccCCcccccccCCCCcEEE
Confidence 21 123333333 3445667776667788888877 677788654322100 0 00 123467
Q ss_pred EeecccCCcEEEEEEcCCCCCcEEEEEE
Q 003878 455 AISARREDSVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 455 ~~s~s~d~~~l~~~~ss~~~P~~ly~~d 482 (789)
.+.|++++..++.. + ..+.+..++
T Consensus 768 ~v~ws~~~~~lva~-~---~dG~I~i~~ 791 (793)
T PLN00181 768 SVCWRGQSSTLVAA-N---STGNIKILE 791 (793)
T ss_pred EEEEcCCCCeEEEe-c---CCCcEEEEe
Confidence 77888888765432 2 234455554
|
|
| >KOG1516 consensus Carboxylesterase and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.2e-05 Score=90.33 Aligned_cols=131 Identities=21% Similarity=0.199 Sum_probs=86.6
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCCH-HHHHHHHcCCeEEEEEeecCCCCCChhHHhcccc
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSV-SRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 592 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~~-~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~ 592 (789)
+.|. +.+-++.|+.....+ .|++|++|||.-.... ..|.. .....+..+..+|+.++||-|- +| |...+..
T Consensus 93 sEDC---LylNV~tp~~~~~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~-lG--F~st~d~ 165 (545)
T KOG1516|consen 93 SEDC---LYLNVYTPQGCSESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGP-LG--FLSTGDS 165 (545)
T ss_pred cCCC---ceEEEeccCCCccCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEeccccee-ce--eeecCCC
Confidence 4455 566777787643223 9999999998432222 22211 1134455578999999999652 22 2222222
Q ss_pred c-CCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhCC---CceeEEEecCCcc
Q 003878 593 A-KKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQRP---DLFGCALAHVGVM 653 (789)
Q Consensus 593 ~-~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p---d~f~a~v~~~p~~ 653 (789)
. .+.-.+.|.+.|++|+.++ ---||++|.++|+|+||.++..++.. | .+|+.+|.+++..
T Consensus 166 ~~~gN~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~S-p~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 166 AAPGNLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLS-PHSRGLFHKAISMSGNA 232 (545)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcC-HhhHHHHHHHHhhcccc
Confidence 2 2334567999999999765 22699999999999999998877664 4 4899888887743
|
|
| >COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00099 Score=63.12 Aligned_cols=122 Identities=16% Similarity=0.095 Sum_probs=85.8
Q ss_pred ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhc
Q 003878 592 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDF 671 (789)
Q Consensus 592 ~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~ 671 (789)
.++....++|-++.++.-+..- ++.+++.+||.|..+++..+-+.-..++++++.+|+- .
T Consensus 36 ~~w~~P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd-~---------------- 95 (181)
T COG3545 36 DDWEAPVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPD-V---------------- 95 (181)
T ss_pred CCCCCCCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCC-c----------------
Confidence 4566677889888887766542 4559999999999999998887655677777777632 1
Q ss_pred CCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEE
Q 003878 672 GCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIG 751 (789)
Q Consensus 672 g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l 751 (789)
..|.. ....+..++|+...+.. =|.+++++.||+.|+++++..+.+++-.. |
T Consensus 96 ~~~~~--~~~~~~tf~~~p~~~lp-----------fps~vvaSrnDp~~~~~~a~~~a~~wgs~---------------l 147 (181)
T COG3545 96 SRPEI--RPKHLMTFDPIPREPLP-----------FPSVVVASRNDPYVSYEHAEDLANAWGSA---------------L 147 (181)
T ss_pred ccccc--chhhccccCCCccccCC-----------CceeEEEecCCCCCCHHHHHHHHHhccHh---------------h
Confidence 11100 01223456666554443 37889999999999999999998887654 5
Q ss_pred EEeCCCCcCC
Q 003878 752 RIERKAGHGV 761 (789)
Q Consensus 752 ~~~~~~gH~~ 761 (789)
+...++||..
T Consensus 148 v~~g~~GHiN 157 (181)
T COG3545 148 VDVGEGGHIN 157 (181)
T ss_pred eecccccccc
Confidence 6666777753
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0045 Score=60.84 Aligned_cols=224 Identities=11% Similarity=0.066 Sum_probs=125.3
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..+-.+..|-|..++| +++....+++||++||+.... +.+. .+
T Consensus 60 ~EVlD~~~s~Dnskf~-----s~GgDk~v~vwDV~TGkv~Rr-~rgH-------~a------------------------ 102 (307)
T KOG0316|consen 60 HEVLDAALSSDNSKFA-----SCGGDKAVQVWDVNTGKVDRR-FRGH-------LA------------------------ 102 (307)
T ss_pred ceeeeccccccccccc-----cCCCCceEEEEEcccCeeeee-cccc-------cc------------------------
Confidence 3466777888998887 444567899999999987652 2221 01
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
+...+.|..++ .++++ ......+..|+-.+...+.+.
T Consensus 103 ------------------------qVNtV~fNees-SVv~S------------------gsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 103 ------------------------QVNTVRFNEES-SVVAS------------------GSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred ------------------------eeeEEEecCcc-eEEEe------------------ccccceeEEEEcccCCCCccc
Confidence 24667776444 45444 233456888888877666666
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc-cc--ceeEEEec
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FD--AQYEVIAN 368 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~-~~--~~~~~~s~ 368 (789)
++.+..+. +.++.. .+.-|+..+.+ ..+..+|+..|. ++.+ +. ..-..+++
T Consensus 140 ildea~D~--V~Si~v--~~heIvaGS~D-----GtvRtydiR~G~-----------------l~sDy~g~pit~vs~s~ 193 (307)
T KOG0316|consen 140 ILDEAKDG--VSSIDV--AEHEIVAGSVD-----GTVRTYDIRKGT-----------------LSSDYFGHPITSVSFSK 193 (307)
T ss_pred hhhhhcCc--eeEEEe--cccEEEeeccC-----CcEEEEEeecce-----------------eehhhcCCcceeEEecC
Confidence 66554322 334433 23334333322 335666766541 1111 11 11123789
Q ss_pred CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc
Q 003878 369 DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI 448 (789)
Q Consensus 369 dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~ 448 (789)
||+-..+.+ -+..|.++|-++++-.+.-..+....+-..-.+...+..+++.+++| .+|+||+.++..+..+..
T Consensus 194 d~nc~La~~----l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG--~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 194 DGNCSLASS----LDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDG--KVYFWDLVDETQISKLSV 267 (307)
T ss_pred CCCEEEEee----ccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCc--eEEEEEeccceeeeeecc
Confidence 988666433 23567778877775222222222111212233444467889999998 799999987665445544
Q ss_pred CCee-EEEeecccCCcEEEE
Q 003878 449 EIGS-VNAISARREDSVVFI 467 (789)
Q Consensus 449 ~~~~-v~~~s~s~d~~~l~~ 467 (789)
+... +..++..|.-..++.
T Consensus 268 ~~~v~v~dl~~hp~~~~f~~ 287 (307)
T KOG0316|consen 268 VSTVIVTDLSCHPTMDDFIT 287 (307)
T ss_pred CCceeEEeeecccCccceeE
Confidence 4332 445555554444443
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0028 Score=64.52 Aligned_cols=260 Identities=14% Similarity=0.113 Sum_probs=135.8
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCC-------cee-----cc-cccccccccccCccceeeee-ecc-cc
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ-------IVE-----AD-ALSWVCFCFSHSFGYFFHLT-ISL-LN 198 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg-------~~~-----~~-~~~~~~~~~~~~~~~~~~~~-~~~-~~ 198 (789)
....++||||..+| .|+-...|+|+|++.- ++. +. .+-.. .++|++ ++- ..
T Consensus 115 cR~aafs~DG~lvA-----TGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRT---------lYDH~devn~l~F 180 (430)
T KOG0640|consen 115 CRAAAFSPDGSLVA-----TGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRT---------LYDHVDEVNDLDF 180 (430)
T ss_pred eeeeeeCCCCcEEE-----ccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEee---------hhhccCcccceee
Confidence 44567999999999 6777889999999821 000 00 00000 122221 111 12
Q ss_pred ccccccccccccceeeEEEeeeccccceeeeeeec------------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCC
Q 003878 199 VPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVS------------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 266 (789)
Q Consensus 199 ~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~------------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~ 266 (789)
-|.. .||+++.++++-.|....- .....++.|.|.|..|+.....
T Consensus 181 HPre------------~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdH----------- 237 (430)
T KOG0640|consen 181 HPRE------------TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDH----------- 237 (430)
T ss_pred cchh------------heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCC-----------
Confidence 2444 6899999999999876543 2224678999999999876432
Q ss_pred ccccCCcccEEEEEECCCCCCCcEEEEecCC--CCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCccccc
Q 003878 267 TETDSNLYHEFYYHFLGTKQSEDILCWKDPE--HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFK 344 (789)
Q Consensus 267 ~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~--~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~ 344 (789)
..++++++.|-+. .+-..|+ +...+..+..|+.|+.-+-.+.+ ..|.++|--.+
T Consensus 238 --------p~~rlYdv~T~Qc---fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkD-----G~IklwDGVS~-------- 293 (430)
T KOG0640|consen 238 --------PTLRLYDVNTYQC---FVSANPDDQHTGAITQVRYSSTGSLYVTASKD-----GAIKLWDGVSN-------- 293 (430)
T ss_pred --------CceeEEeccceeE---eeecCcccccccceeEEEecCCccEEEEeccC-----CcEEeeccccH--------
Confidence 2366777776432 2222222 22335678889988755433332 34666663321
Q ss_pred ccCCCCccEeee---ccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCC--CceeeeEEEecCCE
Q 003878 345 KRDGLLPFVKLI---DGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAE--RDVLESATAVNLNQ 419 (789)
Q Consensus 345 ~~~~~~~~~~l~---~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~--~~~i~~v~~~~~~~ 419 (789)
.+....- ++...-...|+.+|++++ +. +.+.-+.+|.+.++...++.+..+. .+....-+++++..
T Consensus 294 -----rCv~t~~~AH~gsevcSa~Ftkn~kyiL--sS--G~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtE 364 (430)
T KOG0640|consen 294 -----RCVRTIGNAHGGSEVCSAVFTKNGKYIL--SS--GKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTE 364 (430)
T ss_pred -----HHHHHHHhhcCCceeeeEEEccCCeEEe--ec--CCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCcc
Confidence 1111111 111111245888888655 22 3345677777766542333332210 11111222333222
Q ss_pred EEEEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEeecccCCc
Q 003878 420 MIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDS 463 (789)
Q Consensus 420 lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s~d~~ 463 (789)
=|+..-+.....|..||..++..+..+.+. .+.+..+.-+|.+.
T Consensus 365 dyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 365 DYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP 409 (430)
T ss_pred ceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC
Confidence 222233333457888988777654555544 44444444444443
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.003 Score=65.71 Aligned_cols=117 Identities=15% Similarity=0.165 Sum_probs=73.6
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
|+.-|.+++|.+||..|+-+. -| ...|.|||..+|..++..-.+..
T Consensus 194 gh~pVtsmqwn~dgt~l~tAS--~g--sssi~iWdpdtg~~~pL~~~glg------------------------------ 239 (445)
T KOG2139|consen 194 GHNPVTSMQWNEDGTILVTAS--FG--SSSIMIWDPDTGQKIPLIPKGLG------------------------------ 239 (445)
T ss_pred CCceeeEEEEcCCCCEEeecc--cC--cceEEEEcCCCCCcccccccCCC------------------------------
Confidence 445688999999999887432 23 46799999999987663311110
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECC-CCCCC
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLG-TKQSE 288 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg-~~~~~ 288 (789)
.++-+.|||||..|+-.+.+.. ..++... +-..+
T Consensus 240 --------------------------g~slLkwSPdgd~lfaAt~dav-------------------frlw~e~q~wt~e 274 (445)
T KOG2139|consen 240 --------------------------GFSLLKWSPDGDVLFAATCDAV-------------------FRLWQENQSWTKE 274 (445)
T ss_pred --------------------------ceeeEEEcCCCCEEEEecccce-------------------eeeehhcccceec
Confidence 1467899999999997765531 2222111 11111
Q ss_pred cEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECC
Q 003878 289 DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLS 334 (789)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~ 334 (789)
.- +. .+.++....|||+|++|+|.... ...||.+...
T Consensus 275 rw-~l----gsgrvqtacWspcGsfLLf~~sg----sp~lysl~f~ 311 (445)
T KOG2139|consen 275 RW-IL----GSGRVQTACWSPCGSFLLFACSG----SPRLYSLTFD 311 (445)
T ss_pred ce-ec----cCCceeeeeecCCCCEEEEEEcC----CceEEEEeec
Confidence 11 11 12345678899999999998754 3556666543
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0063 Score=61.94 Aligned_cols=247 Identities=13% Similarity=0.084 Sum_probs=135.9
Q ss_pred CCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccc
Q 003878 126 LSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLF 205 (789)
Q Consensus 126 ~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 205 (789)
+-.++...|.-..++|||..+| +|+-...|.+|++-....---.+... |.
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~a-----SgG~Dr~I~LWnv~gdceN~~~lkgH------sg------------------- 91 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFA-----SGGSDRAIVLWNVYGDCENFWVLKGH------SG------------------- 91 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEe-----ecCCcceEEEEeccccccceeeeccc------cc-------------------
Confidence 3345556677889999999998 45556799999976542211122221 10
Q ss_pred cccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCC
Q 003878 206 LYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTK 285 (789)
Q Consensus 206 ~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~ 285 (789)
.+..+.|.+|+..|+-... ..+++.|+..++
T Consensus 92 ------------------------------AVM~l~~~~d~s~i~S~gt-------------------Dk~v~~wD~~tG 122 (338)
T KOG0265|consen 92 ------------------------------AVMELHGMRDGSHILSCGT-------------------DKTVRGWDAETG 122 (338)
T ss_pred ------------------------------eeEeeeeccCCCEEEEecC-------------------CceEEEEecccc
Confidence 2578899999999875533 235888888776
Q ss_pred CCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEE
Q 003878 286 QSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV 365 (789)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 365 (789)
.. ++.-..+..++.++..+.-|-.|+.+.++ ...+.++|+.+.. +.......+...-..
T Consensus 123 ~~----~rk~k~h~~~vNs~~p~rrg~~lv~Sgsd----D~t~kl~D~R~k~-------------~~~t~~~kyqltAv~ 181 (338)
T KOG0265|consen 123 KR----IRKHKGHTSFVNSLDPSRRGPQLVCSGSD----DGTLKLWDIRKKE-------------AIKTFENKYQLTAVG 181 (338)
T ss_pred ee----eehhccccceeeecCccccCCeEEEecCC----CceEEEEeecccc-------------hhhccccceeEEEEE
Confidence 43 22223334445556666667777665543 3457778887521 011111111111112
Q ss_pred EecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCC---Cce
Q 003878 366 IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN---GSL 442 (789)
Q Consensus 366 ~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~t---G~~ 442 (789)
|...++.+.. ++-+..|-.+|+...+-.-.+-.+. ..|.+++.++++..+.+-.-+. .+.+||..- ++.
T Consensus 182 f~d~s~qv~s----ggIdn~ikvWd~r~~d~~~~lsGh~--DtIt~lsls~~gs~llsnsMd~--tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 182 FKDTSDQVIS----GGIDNDIKVWDLRKNDGLYTLSGHA--DTITGLSLSRYGSFLLSNSMDN--TVRVWDVRPFAPSQR 253 (338)
T ss_pred ecccccceee----ccccCceeeeccccCcceEEeeccc--CceeeEEeccCCCccccccccc--eEEEEEecccCCCCc
Confidence 5444554441 2345678889986655222333333 5678888888555544433332 677887641 221
Q ss_pred eeecccCCeeE-------EEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 443 LHQLPIEIGSV-------NAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 443 ~~~l~~~~~~v-------~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
.+..-.+.+ -..+|+|++..+-+..+ -..+|.||..+.
T Consensus 254 --~v~if~g~~hnfeknlL~cswsp~~~~i~ags~----dr~vyvwd~~~r 298 (338)
T KOG0265|consen 254 --CVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSA----DRFVYVWDTTSR 298 (338)
T ss_pred --eEEEeecchhhhhhhcceeeccCCCCccccccc----cceEEEeecccc
Confidence 121111111 13467888776544332 246788886554
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00061 Score=69.32 Aligned_cols=225 Identities=18% Similarity=0.213 Sum_probs=127.7
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
++-.+.+|-|...|| +|+....|+||.++||.-+. .+... |+.|
T Consensus 265 aVlci~FSRDsEMlA-----sGsqDGkIKvWri~tG~ClR-rFdrA-----HtkG------------------------- 308 (508)
T KOG0275|consen 265 AVLCISFSRDSEMLA-----SGSQDGKIKVWRIETGQCLR-RFDRA-----HTKG------------------------- 308 (508)
T ss_pred ceEEEeecccHHHhh-----ccCcCCcEEEEEEecchHHH-Hhhhh-----hccC-------------------------
Confidence 355678999999998 67777899999999997654 22222 2222
Q ss_pred eeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 292 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~ 292 (789)
...+.||.|+.+|+-.. ..+.+++|-+-++. ++
T Consensus 309 ------------------------vt~l~FSrD~SqiLS~s-------------------fD~tvRiHGlKSGK----~L 341 (508)
T KOG0275|consen 309 ------------------------VTCLSFSRDNSQILSAS-------------------FDQTVRIHGLKSGK----CL 341 (508)
T ss_pred ------------------------eeEEEEccCcchhhccc-------------------ccceEEEeccccch----hH
Confidence 47889999999987443 33467778665442 12
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCE
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTV 372 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~ 372 (789)
-+-..+..|+..+.+++||.+++-.++++ .+.+++.++.++ +.. ++++-.+........-|....
T Consensus 342 KEfrGHsSyvn~a~ft~dG~~iisaSsDg-----tvkvW~~KtteC-~~T---------fk~~~~d~~vnsv~~~PKnpe 406 (508)
T KOG0275|consen 342 KEFRGHSSYVNEATFTDDGHHIISASSDG-----TVKVWHGKTTEC-LST---------FKPLGTDYPVNSVILLPKNPE 406 (508)
T ss_pred HHhcCccccccceEEcCCCCeEEEecCCc-----cEEEecCcchhh-hhh---------ccCCCCcccceeEEEcCCCCc
Confidence 12233566777889999999997665443 366777766421 111 111111111111112343333
Q ss_pred EEEEECCCCCCceEEEEECCCCCCeEEeccCC-C-CceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceeeecccC
Q 003878 373 FTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-E-RDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE 449 (789)
Q Consensus 373 l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~-~-~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~ 449 (789)
-+++.|+. ..||.+++.+.- .+...... + ...+ ...+++ ++++|... +|+ .+|-+...+|+..+.++..
T Consensus 407 h~iVCNrs---ntv~imn~qGQv-VrsfsSGkREgGdFi-~~~lSpkGewiYcig-ED~--vlYCF~~~sG~LE~tl~Vh 478 (508)
T KOG0275|consen 407 HFIVCNRS---NTVYIMNMQGQV-VRSFSSGKREGGDFI-NAILSPKGEWIYCIG-EDG--VLYCFSVLSGKLERTLPVH 478 (508)
T ss_pred eEEEEcCC---CeEEEEeccceE-EeeeccCCccCCceE-EEEecCCCcEEEEEc-cCc--EEEEEEeecCceeeeeecc
Confidence 34456653 468888886532 22222211 1 1233 333444 35566544 444 6888888888875666655
Q ss_pred CeeEEEeecccCCc
Q 003878 450 IGSVNAISARREDS 463 (789)
Q Consensus 450 ~~~v~~~s~s~d~~ 463 (789)
...+-++.-.|..+
T Consensus 479 EkdvIGl~HHPHqN 492 (508)
T KOG0275|consen 479 EKDVIGLTHHPHQN 492 (508)
T ss_pred cccccccccCcccc
Confidence 44444555444444
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00056 Score=73.53 Aligned_cols=223 Identities=18% Similarity=0.167 Sum_probs=129.6
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCcee-ccccccc-ccccccCccceeeeeecccccccccccccccc
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE-ADALSWV-CFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
.+.+..++|||+.|+ .|++..++-||||++-... ...++.. -.|| +|.+ .||.
T Consensus 467 yiRSckL~pdgrtLi-----vGGeastlsiWDLAapTprikaeltssapaCy--------ALa~----spDa-------- 521 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLI-----VGGEASTLSIWDLAAPTPRIKAELTSSAPACY--------ALAI----SPDA-------- 521 (705)
T ss_pred ceeeeEecCCCceEE-----eccccceeeeeeccCCCcchhhhcCCcchhhh--------hhhc----CCcc--------
Confidence 367888999999998 4677999999999986422 1122221 1232 2333 3666
Q ss_pred ceeeEEEeeeccccceeeeeeeccccc----------ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEE
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVSQFKF----------SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYH 280 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~~~~~----------~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (789)
+++|++=.+|...||.+..+..+ ..+..|+||..|+- .+..+.|+.|
T Consensus 522 ----kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWT-------------------GGlDntvRcW 578 (705)
T KOG0639|consen 522 ----KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWT-------------------GGLDNTVRCW 578 (705)
T ss_pred ----ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeec-------------------CCCccceeeh
Confidence 69999999999999998872222 45667777777652 2345668889
Q ss_pred ECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc
Q 003878 281 FLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD 360 (789)
Q Consensus 281 ~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 360 (789)
++.+...-.. + +-...++++...|.|.||++... ++.++++.... +.+ -.+.....
T Consensus 579 Dlregrqlqq--h---dF~SQIfSLg~cP~~dWlavGMe-----ns~vevlh~sk-p~k-------------yqlhlheS 634 (705)
T KOG0639|consen 579 DLREGRQLQQ--H---DFSSQIFSLGYCPTGDWLAVGME-----NSNVEVLHTSK-PEK-------------YQLHLHES 634 (705)
T ss_pred hhhhhhhhhh--h---hhhhhheecccCCCccceeeecc-----cCcEEEEecCC-ccc-------------eeeccccc
Confidence 8876532111 1 11233568889999999998764 35578877654 211 11111111
Q ss_pred ceeE-EEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEE
Q 003878 361 AQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 361 ~~~~-~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~ 434 (789)
.... -|++-|++|+ .+.++ ..-..++++. +. .++...+...+....++.+++++++.+-+-...||-
T Consensus 635 cVLSlKFa~cGkwfv-StGkD-nlLnawrtPy--Ga---siFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 635 CVLSLKFAYCGKWFV-STGKD-NLLNAWRTPY--GA---SIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred EEEEEEecccCceee-ecCch-hhhhhccCcc--cc---ceeeccccCcceeeeeccCceEEEecCCCcceEEEE
Confidence 1111 2677787654 44332 1122333332 22 122222234455666666678888777664444543
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00027 Score=75.72 Aligned_cols=225 Identities=12% Similarity=0.033 Sum_probs=127.2
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecc-cccccccccccCccceeeeeecccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYL 208 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (789)
+.-.|..+.||++|..+. +.+=...|++||++||..+.. ....
T Consensus 257 H~k~Vrd~~~s~~g~~fL-----S~sfD~~lKlwDtETG~~~~~f~~~~------------------------------- 300 (503)
T KOG0282|consen 257 HRKPVRDASFNNCGTSFL-----SASFDRFLKLWDTETGQVLSRFHLDK------------------------------- 300 (503)
T ss_pred chhhhhhhhccccCCeee-----eeecceeeeeeccccceEEEEEecCC-------------------------------
Confidence 334577889999999886 233356899999999977641 1111
Q ss_pred ccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC
Q 003878 209 RGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE 288 (789)
Q Consensus 209 ~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~ 288 (789)
...-+.+.||+..+|+.. ....+|..|++.++..
T Consensus 301 ---------------------------~~~cvkf~pd~~n~fl~G------------------~sd~ki~~wDiRs~kv- 334 (503)
T KOG0282|consen 301 ---------------------------VPTCVKFHPDNQNIFLVG------------------GSDKKIRQWDIRSGKV- 334 (503)
T ss_pred ---------------------------CceeeecCCCCCcEEEEe------------------cCCCcEEEEeccchHH-
Confidence 135677899997777662 2344688899877531
Q ss_pred cEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee--EEE
Q 003878 289 DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY--EVI 366 (789)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~ 366 (789)
+-+-..+-..+..+.+-++|++.+.++.+. + +.+++-... .+...........- ...
T Consensus 335 ---vqeYd~hLg~i~~i~F~~~g~rFissSDdk---s--~riWe~~~~-------------v~ik~i~~~~~hsmP~~~~ 393 (503)
T KOG0282|consen 335 ---VQEYDRHLGAILDITFVDEGRRFISSSDDK---S--VRIWENRIP-------------VPIKNIADPEMHTMPCLTL 393 (503)
T ss_pred ---HHHHHhhhhheeeeEEccCCceEeeeccCc---c--EEEEEcCCC-------------ccchhhcchhhccCcceec
Confidence 111112233456788899999987665432 3 444444331 11111111000011 124
Q ss_pred ecCCCEEEEEECCCCCCceEEEEECCCCC--CeEEec-cCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCcee
Q 003878 367 ANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVI-PEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLL 443 (789)
Q Consensus 367 s~dG~~l~~~tn~~~~~~~L~~~dl~~~~--~~~~l~-~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~ 443 (789)
.|+|..+.-.+.. ..|+...+...- .-+..+ .+.-...-..+.+++|+..++++..+| .++.||.++-+..
T Consensus 394 ~P~~~~~~aQs~d----N~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG--~v~~wdwkt~kl~ 467 (503)
T KOG0282|consen 394 HPNGKWFAAQSMD----NYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDG--KVNFWDWKTTKLV 467 (503)
T ss_pred CCCCCeehhhccC----ceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCc--cEEEeechhhhhh
Confidence 5677766544332 234444332210 001111 111122334577888888998888777 7899998876665
Q ss_pred eecccCCeeEEEeecccCCc
Q 003878 444 HQLPIEIGSVNAISARREDS 463 (789)
Q Consensus 444 ~~l~~~~~~v~~~s~s~d~~ 463 (789)
..+..+...+.++.|.|-..
T Consensus 468 ~~lkah~~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 468 SKLKAHDQPCIGVDWHPVEP 487 (503)
T ss_pred hccccCCcceEEEEecCCCc
Confidence 66666655555677766544
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0027 Score=72.75 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=57.6
Q ss_pred Eeeeccccceeeeeeec--ccc-------cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC
Q 003878 217 LFSLVKSTIYSFWSVVS--QFK-------FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS 287 (789)
Q Consensus 217 ~~~s~~~g~~~l~~~~~--~~~-------~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~ 287 (789)
|.+|.-+.|-.||.+.. .|+ +..++|.|-.+..|.+ .....++++|.+-.
T Consensus 383 LLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiS------------------GSLD~KvRiWsI~d--- 441 (712)
T KOG0283|consen 383 LLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFIS------------------GSLDGKVRLWSISD--- 441 (712)
T ss_pred eEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEee------------------cccccceEEeecCc---
Confidence 77888999999999877 222 2678888855555544 23456788998853
Q ss_pred CcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcC
Q 003878 288 EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEEN 321 (789)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 321 (789)
..+..|.+- ...+.++.++|||++.++.+..+
T Consensus 442 ~~Vv~W~Dl--~~lITAvcy~PdGk~avIGt~~G 473 (712)
T KOG0283|consen 442 KKVVDWNDL--RDLITAVCYSPDGKGAVIGTFNG 473 (712)
T ss_pred CeeEeehhh--hhhheeEEeccCCceEEEEEecc
Confidence 234445443 24567899999999999988754
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0024 Score=74.16 Aligned_cols=165 Identities=13% Similarity=0.074 Sum_probs=100.1
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+++.||||+.++|......+ +..+...||+...+... ..++.... ...+.|||||++|++
T Consensus 352 vsspaiSpdG~~vA~v~~~~~~-----------~~d~~s~Lwv~~~gg~~---~~lt~g~~----~t~PsWspDG~~lw~ 413 (591)
T PRK13616 352 ITSAALSRSGRQVAAVVTLGRG-----------APDPASSLWVGPLGGVA---VQVLEGHS----LTRPSWSLDADAVWV 413 (591)
T ss_pred cccceECCCCCEEEEEEeecCC-----------CCCcceEEEEEeCCCcc---eeeecCCC----CCCceECCCCCceEE
Confidence 3688999999999999753211 11244578888875432 22333321 347899999999988
Q ss_pred EEEcC-------CCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEE-
Q 003878 317 CIEEN-------CDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIR- 388 (789)
Q Consensus 317 ~~~~~-------~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~- 388 (789)
..... .....++|+++++.+. . ..-..+ ...-..|||||.+++++.. ++|++
T Consensus 414 v~dg~~~~~v~~~~~~gql~~~~vd~ge-----------~---~~~~~g-~Issl~wSpDG~RiA~i~~-----g~v~Va 473 (591)
T PRK13616 414 VVDGNTVVRVIRDPATGQLARTPVDASA-----------V---ASRVPG-PISELQLSRDGVRAAMIIG-----GKVYLA 473 (591)
T ss_pred EecCcceEEEeccCCCceEEEEeccCch-----------h---hhccCC-CcCeEEECCCCCEEEEEEC-----CEEEEE
Confidence 75321 1124578888876642 0 101111 1223459999999999872 47777
Q ss_pred --EECCCCC----CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce
Q 003878 389 --VDLKEPN----DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 389 --~dl~~~~----~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
....++. ..+++.+.. .....++.|..++.|++.. .++...++.++++ |..
T Consensus 474 ~Vvr~~~G~~~l~~~~~l~~~l-~~~~~~l~W~~~~~L~V~~-~~~~~~v~~v~vD-G~~ 530 (591)
T PRK13616 474 VVEQTEDGQYALTNPREVGPGL-GDTAVSLDWRTGDSLVVGR-SDPEHPVWYVNLD-GSN 530 (591)
T ss_pred EEEeCCCCceeecccEEeeccc-CCccccceEecCCEEEEEe-cCCCCceEEEecC-Ccc
Confidence 4434443 123344433 2334678899877877654 4555678999998 654
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0022 Score=73.97 Aligned_cols=168 Identities=14% Similarity=0.156 Sum_probs=100.5
Q ss_pred EEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCc
Q 003878 107 LYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSF 186 (789)
Q Consensus 107 ~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~ 186 (789)
+.+.+-..+++.-+|+.-++ .+..++++-+|+++|. |++.+.|++.++.+..... .+.+. .
T Consensus 78 v~~y~fps~~~~~iL~Rftl------p~r~~~v~g~g~~iaa-----gsdD~~vK~~~~~D~s~~~-~lrgh-------~ 138 (933)
T KOG1274|consen 78 VLRYKFPSGEEDTILARFTL------PIRDLAVSGSGKMIAA-----GSDDTAVKLLNLDDSSQEK-VLRGH-------D 138 (933)
T ss_pred EEEeeCCCCCccceeeeeec------cceEEEEecCCcEEEe-----ecCceeEEEEeccccchhe-eeccc-------C
Confidence 33333334555656665543 4678899999999994 6678889999987763221 11111 0
Q ss_pred cceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeec------------ccc------cceEEEEeCCcE
Q 003878 187 GYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVS------------QFK------FSSIAWTHDSKG 248 (789)
Q Consensus 187 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~------------~~~------~~~~~wspDg~~ 248 (789)
+-..+|+-+ |.+ .+|.+|+-+|+-++|.+.. ... ...++|+|+|.+
T Consensus 139 apVl~l~~~----p~~------------~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~ 202 (933)
T KOG1274|consen 139 APVLQLSYD----PKG------------NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGT 202 (933)
T ss_pred CceeeeeEc----CCC------------CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCe
Confidence 000111111 333 4789999999999999877 111 246899999888
Q ss_pred EEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEE
Q 003878 249 FFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKV 328 (789)
Q Consensus 249 i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i 328 (789)
+++...+. .|..++..+-.. ...+.......-+..++|||.|+|||...- .+.|
T Consensus 203 la~~~~d~-------------------~Vkvy~r~~we~--~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~-----~g~I 256 (933)
T KOG1274|consen 203 LAVPPVDN-------------------TVKVYSRKGWEL--QFKLRDKLSSSKFSDLQWSPNGKYIAASTL-----DGQI 256 (933)
T ss_pred EEeeccCC-------------------eEEEEccCCcee--heeecccccccceEEEEEcCCCcEEeeecc-----CCcE
Confidence 87764332 233433332211 111111112222567899999999997654 3568
Q ss_pred EEEECCC
Q 003878 329 YYCDLSA 335 (789)
Q Consensus 329 ~~~d~~~ 335 (789)
-+||+++
T Consensus 257 ~vWnv~t 263 (933)
T KOG1274|consen 257 LVWNVDT 263 (933)
T ss_pred EEEeccc
Confidence 8899886
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0093 Score=61.06 Aligned_cols=247 Identities=14% Similarity=0.110 Sum_probs=131.2
Q ss_pred EeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceee
Q 003878 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFF 214 (789)
Q Consensus 135 ~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 214 (789)
...++|+-|.+||.+.. . ..+.+||..|..+- ..+...+
T Consensus 27 ~~~~Fs~~G~~lAvGc~-n----G~vvI~D~~T~~ia-r~lsaH~----------------------------------- 65 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCA-N----GRVVIYDFDTFRIA-RMLSAHV----------------------------------- 65 (405)
T ss_pred ceEEeccCcceeeeecc-C----CcEEEEEccccchh-hhhhccc-----------------------------------
Confidence 45789999999998765 2 36888999887422 1222210
Q ss_pred EEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEe
Q 003878 215 FYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK 294 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~ 294 (789)
....+++||+||+.|+-+. +...+..|++-.+..-....|.
T Consensus 66 --------------------~pi~sl~WS~dgr~LltsS-------------------~D~si~lwDl~~gs~l~rirf~ 106 (405)
T KOG1273|consen 66 --------------------RPITSLCWSRDGRKLLTSS-------------------RDWSIKLWDLLKGSPLKRIRFD 106 (405)
T ss_pred --------------------cceeEEEecCCCCEeeeec-------------------CCceeEEEeccCCCceeEEEcc
Confidence 0248999999999998543 3446888888665443344444
Q ss_pred cCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc----ceeEEEecCC
Q 003878 295 DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD----AQYEVIANDD 370 (789)
Q Consensus 295 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~s~dG 370 (789)
.| +..+.|.|-.+..++.+--.. .-+++++...... ..+.-.+.+ +....+.+.|
T Consensus 107 sp-----v~~~q~hp~k~n~~va~~~~~----sp~vi~~s~~~h~------------~Lp~d~d~dln~sas~~~fdr~g 165 (405)
T KOG1273|consen 107 SP-----VWGAQWHPRKRNKCVATIMEE----SPVVIDFSDPKHS------------VLPKDDDGDLNSSASHGVFDRRG 165 (405)
T ss_pred Cc-----cceeeeccccCCeEEEEEecC----CcEEEEecCCcee------------eccCCCccccccccccccccCCC
Confidence 32 345677775554444332221 1355666542110 000101111 1112366778
Q ss_pred CEEEEEECCCCCCceEEEEECCCCC--CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC---C-Cceee
Q 003878 371 TVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK---N-GSLLH 444 (789)
Q Consensus 371 ~~l~~~tn~~~~~~~L~~~dl~~~~--~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~---t-G~~~~ 444 (789)
++++.-+ ..++|..++..+-+ .+-.++. -..|..+.++..+..+++-..|- .|+.+++. + |+. .
T Consensus 166 ~yIitGt----sKGkllv~~a~t~e~vas~rits---~~~IK~I~~s~~g~~liiNtsDR--vIR~ye~~di~~~~r~-~ 235 (405)
T KOG1273|consen 166 KYIITGT----SKGKLLVYDAETLECVASFRITS---VQAIKQIIVSRKGRFLIINTSDR--VIRTYEISDIDDEGRD-G 235 (405)
T ss_pred CEEEEec----CcceEEEEecchheeeeeeeech---heeeeEEEEeccCcEEEEecCCc--eEEEEehhhhcccCcc-C
Confidence 8887432 35788888887754 1222322 13456666664344444443332 45566543 1 111 1
Q ss_pred ecccC--------CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeeec
Q 003878 445 QLPIE--------IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRET 496 (789)
Q Consensus 445 ~l~~~--------~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~~ 496 (789)
.++.. .-......++.+|..+. .+| .....+|.|.-..|.+ .++|...
T Consensus 236 e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~--a~s-~~aHaLYIWE~~~GsL-VKILhG~ 291 (405)
T KOG1273|consen 236 EVEPEHKLQDVVNKLQWKKCCFSGDGEYVC--AGS-ARAHALYIWEKSIGSL-VKILHGT 291 (405)
T ss_pred CcChhHHHHHHHhhhhhhheeecCCccEEE--ecc-ccceeEEEEecCCcce-eeeecCC
Confidence 11110 11122234555665433 233 7788999999888862 5555543
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00099 Score=65.85 Aligned_cols=196 Identities=12% Similarity=0.038 Sum_probs=116.3
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
+...+|+.|.+.|+-.... .-++++++..+..... +-..++..+..+-|-...+.++-
T Consensus 103 vk~~af~~ds~~lltgg~e-------------------kllrvfdln~p~App~---E~~ghtg~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 103 VKAVAFSQDSNYLLTGGQE-------------------KLLRVFDLNRPKAPPK---EISGHTGGIRTVLWCHEDKCILS 160 (334)
T ss_pred eeeEEecccchhhhccchH-------------------HHhhhhhccCCCCCch---hhcCCCCcceeEEEeccCceEEe
Confidence 4678999999888743221 1234445544332211 22233444555666655555543
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND 396 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~ 396 (789)
++. ...|.++|..++. ....+..........+++||+.|.+. ....|..+|.++-+
T Consensus 161 Sad-----d~tVRLWD~rTgt-------------~v~sL~~~s~VtSlEvs~dG~ilTia-----~gssV~Fwdaksf~- 216 (334)
T KOG0278|consen 161 SAD-----DKTVRLWDHRTGT-------------EVQSLEFNSPVTSLEVSQDGRILTIA-----YGSSVKFWDAKSFG- 216 (334)
T ss_pred ecc-----CCceEEEEeccCc-------------EEEEEecCCCCcceeeccCCCEEEEe-----cCceeEEecccccc-
Confidence 332 3458888988853 12223222211223378899876652 22457778877644
Q ss_pred eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec-ccCCeeEEEeecccCCcEEEEEEcCCCCC
Q 003878 397 WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL-PIEIGSVNAISARREDSVVFISFTSFLIP 475 (789)
Q Consensus 397 ~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l-~~~~~~v~~~s~s~d~~~l~~~~ss~~~P 475 (789)
.|-.-.-...+.+.++.+++.+++...++. .++.+|..||+.+... ..+.+.|..+.++|||.. |.|-.+-
T Consensus 217 --~lKs~k~P~nV~SASL~P~k~~fVaGged~--~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~----yAsGSED 288 (334)
T KOG0278|consen 217 --LLKSYKMPCNVESASLHPKKEFFVAGGEDF--KVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGEL----YASGSED 288 (334)
T ss_pred --ceeeccCccccccccccCCCceEEecCcce--EEEEEeccCCceeeecccCCCCceEEEEECCCCce----eeccCCC
Confidence 121112235577888888677888777776 7899999999875442 344777888999999973 2355677
Q ss_pred cEEEEEECCCC
Q 003878 476 GIVYQCNLKTE 486 (789)
Q Consensus 476 ~~ly~~dl~tg 486 (789)
++|.+|....+
T Consensus 289 GTirlWQt~~~ 299 (334)
T KOG0278|consen 289 GTIRLWQTTPG 299 (334)
T ss_pred ceEEEEEecCC
Confidence 78888876555
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.015 Score=60.44 Aligned_cols=226 Identities=15% Similarity=0.145 Sum_probs=130.8
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
-+..+.+-|-..++| .|+...+|.|||++||.... ++++. .--.||..
T Consensus 153 WVr~vavdP~n~wf~-----tgs~DrtikIwDlatg~Lkl-tltGh--------------------------i~~vr~va 200 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFA-----TGSADRTIKIWDLATGQLKL-TLTGH--------------------------IETVRGVA 200 (460)
T ss_pred eEEEEeeCCCceeEE-----ecCCCceeEEEEcccCeEEE-eecch--------------------------hheeeeee
Confidence 467788999988888 56677899999999996542 23321 00124444
Q ss_pred e---eEEEeeeccccceeeeeeec---------ccc-cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEE
Q 003878 213 F---FFYLFSLVKSTIYSFWSVVS---------QFK-FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYY 279 (789)
Q Consensus 213 ~---~~~~~~s~~~g~~~l~~~~~---------~~~-~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (789)
+ +.++|+..+++.-.-|.+.. .+. +..++..|.-+.|+ + ..+...+++
T Consensus 201 vS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~-t------------------~grDst~Rv 261 (460)
T KOG0285|consen 201 VSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLV-T------------------GGRDSTIRV 261 (460)
T ss_pred ecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEE-e------------------cCCcceEEE
Confidence 3 35699999999999998766 111 12344445444443 2 456677999
Q ss_pred EECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc
Q 003878 280 HFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF 359 (789)
Q Consensus 280 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~ 359 (789)
|++.+.. .+.++.+...+ +.++...|-.-+++-.+. ...|.++|+..|++ ...++..
T Consensus 262 WDiRtr~--~V~~l~GH~~~--V~~V~~~~~dpqvit~S~-----D~tvrlWDl~agkt-------------~~tlt~h- 318 (460)
T KOG0285|consen 262 WDIRTRA--SVHVLSGHTNP--VASVMCQPTDPQVITGSH-----DSTVRLWDLRAGKT-------------MITLTHH- 318 (460)
T ss_pred eeecccc--eEEEecCCCCc--ceeEEeecCCCceEEecC-----CceEEEeeeccCce-------------eEeeecc-
Confidence 9998864 34555544433 345555554444443332 35588999987642 2222221
Q ss_pred ccee-E-EEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEEC
Q 003878 360 DAQY-E-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 360 ~~~~-~-~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl 437 (789)
.... . ...| +...|.+. ....+-.+++..+.....+-.+ ...+..++... +.++++..++| .|+.||.
T Consensus 319 kksvral~lhP--~e~~fASa---s~dnik~w~~p~g~f~~nlsgh--~~iintl~~ns-D~v~~~G~dng--~~~fwdw 388 (460)
T KOG0285|consen 319 KKSVRALCLHP--KENLFASA---SPDNIKQWKLPEGEFLQNLSGH--NAIINTLSVNS-DGVLVSGGDNG--SIMFWDW 388 (460)
T ss_pred cceeeEEecCC--chhhhhcc---CCccceeccCCccchhhccccc--cceeeeeeecc-CceEEEcCCce--EEEEEec
Confidence 1111 1 1222 22222221 1223555566555423332222 25566777766 67888888887 7899999
Q ss_pred CCCce
Q 003878 438 KNGSL 442 (789)
Q Consensus 438 ~tG~~ 442 (789)
++|-.
T Consensus 389 ksg~n 393 (460)
T KOG0285|consen 389 KSGHN 393 (460)
T ss_pred CcCcc
Confidence 88854
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0072 Score=60.57 Aligned_cols=212 Identities=13% Similarity=0.032 Sum_probs=123.5
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.+..+.+|++|.++++..+..=+-...|.++|+..-..-...-+.. --+.-|++
T Consensus 95 ~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~----------------~kI~t~~s---------- 148 (327)
T KOG0643|consen 95 PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPY----------------LKIPTPDS---------- 148 (327)
T ss_pred eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCce----------------EEecCCcc----------
Confidence 5677889999999999998776667889999987432110000000 00111333
Q ss_pred eeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 292 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~ 292 (789)
+.....|+|-++.|++.-.+ -.|-.+++.++. .++
T Consensus 149 -----------------------kit~a~Wg~l~~~ii~Ghe~-------------------G~is~~da~~g~---~~v 183 (327)
T KOG0643|consen 149 -----------------------KITSALWGPLGETIIAGHED-------------------GSISIYDARTGK---ELV 183 (327)
T ss_pred -----------------------ceeeeeecccCCEEEEecCC-------------------CcEEEEEcccCc---eee
Confidence 36889999999999876432 236677776542 233
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCE
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTV 372 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~ 372 (789)
-....+...+.++.+|+|..+.+-.+.+ +.-.++|..+.. ..+.-..+.......++|--++
T Consensus 184 ~s~~~h~~~Ind~q~s~d~T~FiT~s~D-----ttakl~D~~tl~-------------v~Kty~te~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 184 DSDEEHSSKINDLQFSRDRTYFITGSKD-----TTAKLVDVRTLE-------------VLKTYTTERPVNTAAISPLLDH 245 (327)
T ss_pred echhhhccccccccccCCcceEEecccC-----ccceeeecccee-------------eEEEeeecccccceecccccce
Confidence 2223344456788999999987654432 224566776631 1111111222223447776666
Q ss_pred EEEEECCCCCCceEEEEECCCCC------------CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEEC
Q 003878 373 FTFLTNKDAPKYKIIRVDLKEPN------------DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 373 l~~~tn~~~~~~~L~~~dl~~~~------------~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl 437 (789)
++.-...++ ..+-......++ ++-.+-.| -..|.++++.|++..|.+..++|.-+|..++.
T Consensus 246 VilgGGqeA--~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH--FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 246 VILGGGQEA--MDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH--FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred EEecCCcee--eeeeeecccccchhhhHHHHHHHHHhcccccc--ccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 554322222 234444433332 11122222 25678899999889999999999877777664
|
|
| >PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.001 Score=71.87 Aligned_cols=165 Identities=16% Similarity=0.128 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHcCCCC--CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccc-ccc-----c---------c-
Q 003878 600 DDFISASEYLISAGYTQ--SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML-RYH-----K---------F- 661 (789)
Q Consensus 600 ~D~~~~~~~L~~~~~~d--~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~-~~~-----~---------~- 661 (789)
-|.+.|+.+|++.-..- .-++..+|+|+||+|+..++--+|.+|.++|-.++.+-.. ++. . +
T Consensus 164 iD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~~~~~~~ 243 (403)
T PF11144_consen 164 IDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYICSGEFF 243 (403)
T ss_pred HHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCccccccccccc
Confidence 48889999998873222 3389999999999999999999999999999876544321 110 0 0
Q ss_pred ---------cCCccchhhcCCC--CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHH
Q 003878 662 ---------TIGHAWVSDFGCS--EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLA 730 (789)
Q Consensus 662 ---------~~~~~~~~e~g~p--~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~ 730 (789)
.....|....+.| -.++. ..++..--..++.-. +.. ...|-.+..|+..|+.+|+++-.+++.
T Consensus 244 ~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~-~~IR~iLn~~HL~iq---s~~--n~~~~yvsYHs~~D~~~p~~~K~~l~~ 317 (403)
T PF11144_consen 244 NFKNIRIYCFDKTFWTRNKNSPYYFSKAR-YIIRSILNPDHLKIQ---SNY--NKKIIYVSYHSIKDDLAPAEDKEELYE 317 (403)
T ss_pred ccCCEEEEEEeccccccCCCCccccChHH-HHHHHhcChHHHHHH---Hhc--ccceEEEEEeccCCCCCCHHHHHHHHH
Confidence 0011243333444 12221 123332111211110 000 024667889999999999999999999
Q ss_pred HHHHhhccCCCCCCCCCcEEEEEe-----------CCCCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 731 TMQYVLCTSLENSPQTNPIIGRIE-----------RKAGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 731 ~L~~~~~~~~~~~~~~~~~~l~~~-----------~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
.|++. |-.++|+.. .+-.||++-+.. ......+.-+.+.+
T Consensus 318 ~l~~l----------gfda~l~lIkdes~iDGkfIKnl~HGmgis~k---~Lf~KeLp~~lek~ 368 (403)
T PF11144_consen 318 ILKNL----------GFDATLHLIKDESEIDGKFIKNLEHGMGISDK---ALFKKELPLMLEKL 368 (403)
T ss_pred HHHHc----------CCCeEEEEecChhhccchheeccccCCCCCHH---HHHHHHhHHHHHHh
Confidence 99998 888888876 346788765433 23344444444443
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0016 Score=68.56 Aligned_cols=248 Identities=11% Similarity=0.013 Sum_probs=138.5
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCc---eec---ccccccccccccCccceeeeeeccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI---VEA---DALSWVCFCFSHSFGYFFHLTISLLNVPTYKLF 205 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 205 (789)
+.|..+.|.|+|++|..+.+ +| ..-+|+..+=. +++ ..+..+ .+++++
T Consensus 97 c~V~~v~WtPeGRRLltgs~-SG----EFtLWNg~~fnFEtilQaHDs~Vr~m------------------~ws~~g--- 150 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQ-SG----EFTLWNGTSFNFETILQAHDSPVRTM------------------KWSHNG--- 150 (464)
T ss_pred cceeeEEEcCCCceeEeecc-cc----cEEEecCceeeHHHHhhhhcccceeE------------------EEccCC---
Confidence 56788999999999986554 23 45556653321 111 111111 122233
Q ss_pred cccccceeeEEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCccc
Q 003878 206 LYLRGIFFFFYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYH 275 (789)
Q Consensus 206 ~~~~~~~~~~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~ 275 (789)
..+.++|.+|....|+-.+ .-.+..+++||....|+-...+ .
T Consensus 151 ---------~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdD-------------------g 202 (464)
T KOG0284|consen 151 ---------TWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDD-------------------G 202 (464)
T ss_pred ---------CEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCC-------------------C
Confidence 4688999999999999888 1234678999966555543322 2
Q ss_pred EEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEee
Q 003878 276 EFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL 355 (789)
Q Consensus 276 ~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l 355 (789)
.|.+|+..-...+.++ ..+. -.+-+++|.|.-..|+..+. .+-|-++|..++. ++..+
T Consensus 203 ~ikiWdf~~~kee~vL--~GHg--wdVksvdWHP~kgLiasgsk-----DnlVKlWDprSg~-------------cl~tl 260 (464)
T KOG0284|consen 203 TIKIWDFRMPKEERVL--RGHG--WDVKSVDWHPTKGLIASGSK-----DNLVKLWDPRSGS-------------CLATL 260 (464)
T ss_pred eEEEEeccCCchhhee--ccCC--CCcceeccCCccceeEEccC-----CceeEeecCCCcc-------------hhhhh
Confidence 4677776554444443 2221 12457899998776654332 3468889988752 11111
Q ss_pred ecccccee-EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEE
Q 003878 356 IDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQ 433 (789)
Q Consensus 356 ~~~~~~~~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~ 433 (789)
...-.... ..|.++|..|.-.+ .+..+.++|+.+-++....-.+. ..+..+.|.+ ...|+.+.-.+| .|+
T Consensus 261 h~HKntVl~~~f~~n~N~Llt~s----kD~~~kv~DiR~mkEl~~~r~Hk--kdv~~~~WhP~~~~lftsgg~Dg--svv 332 (464)
T KOG0284|consen 261 HGHKNTVLAVKFNPNGNWLLTGS----KDQSCKVFDIRTMKELFTYRGHK--KDVTSLTWHPLNESLFTSGGSDG--SVV 332 (464)
T ss_pred hhccceEEEEEEcCCCCeeEEcc----CCceEEEEehhHhHHHHHhhcch--hhheeeccccccccceeeccCCC--ceE
Confidence 11111111 23889986655322 23457777876443233333343 3355677776 356777777776 455
Q ss_pred EEECCCCceeeecccC-CeeEEEeecccCCc
Q 003878 434 IRDLKNGSLLHQLPIE-IGSVNAISARREDS 463 (789)
Q Consensus 434 ~~dl~tG~~~~~l~~~-~~~v~~~s~s~d~~ 463 (789)
.|.+...+.+..+... .+.|.++++.|=|-
T Consensus 333 h~~v~~~~p~~~i~~AHd~~iwsl~~hPlGh 363 (464)
T KOG0284|consen 333 HWVVGLEEPLGEIPPAHDGEIWSLAYHPLGH 363 (464)
T ss_pred EEeccccccccCCCcccccceeeeeccccce
Confidence 5555422332333322 56677777777554
|
|
| >PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0048 Score=66.85 Aligned_cols=230 Identities=19% Similarity=0.179 Sum_probs=138.7
Q ss_pred EEEEEecCCCCCCCCccEEEEEcCCCC---ccCCCCCCHHHH-HHHHcCCeEEEEE-eec-------CCCC-C------C
Q 003878 523 PMFIVSKKNIKLDGSHPCLLYGYGGFN---ISVTPSFSVSRT-ILMRHLGAVFCIA-NIR-------GGGE-Y------G 583 (789)
Q Consensus 523 ~~~l~~p~~~~~~~~~P~ll~~hGg~~---~~~~~~~~~~~~-~~l~~~G~~v~~~-~~R-------G~g~-~------g 583 (789)
.+.|+.|++. ..+...+|++-||.. ....+.+....+ .+...-|-+|+.. ++. +-+. . +
T Consensus 51 ~l~I~vP~~~--~~~~~all~i~gG~~~~~~~~~~~~~~~~~~~~A~~t~siv~~l~qvPNQpl~f~~d~~~r~ED~iIA 128 (367)
T PF10142_consen 51 WLTIYVPKND--KNPDTALLFITGGSNRNWPGPPPDFDDELLQMIARATGSIVAILYQVPNQPLTFDNDPKPRTEDAIIA 128 (367)
T ss_pred EEEEEECCCC--CCCceEEEEEECCcccCCCCCCCcchHHHHHHHHHhcCCEEEEeCcCCCCCeEeCCCCccccHHHHHH
Confidence 4677888872 356678999999862 222223333333 3333345555544 222 2221 1 1
Q ss_pred hhHHhcccc---cCCc-----chHHHHHHHH-HHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecC-Ccc
Q 003878 584 EEWHKGGAL---AKKQ-----NCFDDFISAS-EYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV-GVM 653 (789)
Q Consensus 584 ~~~~~~~~~---~~~~-----~~~~D~~~~~-~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~-p~~ 653 (789)
..|..-... .+-. .+.--.++++ +++.+....+.++.+|.|.|==|..+..++.- ..+.+|++..| +++
T Consensus 129 ytW~~fl~~~d~~w~l~~PMtka~vrAMD~vq~~~~~~~~~~i~~FvV~GaSKRGWTtWltaa~-D~RV~aivP~Vid~L 207 (367)
T PF10142_consen 129 YTWRKFLETGDPEWPLHLPMTKAAVRAMDAVQEFLKKKFGVNIEKFVVTGASKRGWTTWLTAAV-DPRVKAIVPIVIDVL 207 (367)
T ss_pred HHHHHHhccCCccchhhhhHHHHHHHHHHHHHHHHHhhcCCCccEEEEeCCchHhHHHHHhhcc-CcceeEEeeEEEccC
Confidence 234443221 1100 0111222233 33444445678899999999999999888774 56777777653 666
Q ss_pred ccccccc---ccCCccch---hhc---CCC---CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCC
Q 003878 654 DMLRYHK---FTIGHAWV---SDF---GCS---EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVV 721 (789)
Q Consensus 654 d~~~~~~---~~~~~~~~---~e~---g~p---~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~ 721 (789)
|+...+. -..|..|- ..| |-. ..++..+.+.-.+|+.+.++. .-|-||+.|.+|+...
T Consensus 208 N~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~l~tp~f~~L~~ivDP~~Y~~rL----------~~PK~ii~atgDeFf~ 277 (367)
T PF10142_consen 208 NMKANLEHQYRSYGGNWSFAFQDYYNEGITQQLDTPEFDKLMQIVDPYSYRDRL----------TMPKYIINATGDEFFV 277 (367)
T ss_pred CcHHHHHHHHHHhCCCCccchhhhhHhCchhhcCCHHHHHHHHhcCHHHHHHhc----------CccEEEEecCCCceec
Confidence 6654321 01110111 111 211 445555556667999998876 6799999999999999
Q ss_pred cHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 722 PLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 722 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
+..+.-++..|. | +..|++.|+++|+... .+....+.+|+...+
T Consensus 278 pD~~~~y~d~L~------------G-~K~lr~vPN~~H~~~~-----~~~~~~l~~f~~~~~ 321 (367)
T PF10142_consen 278 PDSSNFYYDKLP------------G-EKYLRYVPNAGHSLIG-----SDVVQSLRAFYNRIQ 321 (367)
T ss_pred cCchHHHHhhCC------------C-CeeEEeCCCCCcccch-----HHHHHHHHHHHHHHH
Confidence 999999999886 3 5579999999999865 245567888888764
|
Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.027 Score=59.05 Aligned_cols=214 Identities=13% Similarity=0.096 Sum_probs=127.4
Q ss_pred cceEEEEe-CCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 237 FSSIAWTH-DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 237 ~~~~~wsp-Dg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
...++.+| ++.-++|.|.+. .-+++++..++.... ....+++..++.-..+|+||++|+
T Consensus 7 gH~~a~~p~~~~avafaRRPG------------------~~~~v~D~~~g~~~~--~~~a~~gRHFyGHg~fs~dG~~Ly 66 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPG------------------TFALVFDCRTGQLLQ--RLWAPPGRHFYGHGVFSPDGRLLY 66 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCC------------------cEEEEEEcCCCceee--EEcCCCCCEEecCEEEcCCCCEEE
Confidence 46788899 566677776553 126677776654332 233344455566778999999998
Q ss_pred EEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-cccceeEEEecCCCEEEEEEC-----CC---------
Q 003878 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTN-----KD--------- 380 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dG~~l~~~tn-----~~--------- 380 (789)
.+-++.......|-++|+..+- ........ +.+..-..+.|||+.|++..- .+
T Consensus 67 tTEnd~~~g~G~IgVyd~~~~~------------~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 67 TTENDYETGRGVIGVYDAARGY------------RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EeccccCCCcEEEEEEECcCCc------------EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 7766655556778889987421 00111111 222222347899988876421 11
Q ss_pred CCCceEEEEECCCCCCeEE-eccC-CCCceeeeEEEecCCEEEEEEEeCCe-----EEEEEEECCCCceeeecccC----
Q 003878 381 APKYKIIRVDLKEPNDWFE-VIPE-AERDVLESATAVNLNQMIVSYLSDVK-----YVLQIRDLKNGSLLHQLPIE---- 449 (789)
Q Consensus 381 ~~~~~L~~~dl~~~~~~~~-l~~~-~~~~~i~~v~~~~~~~lv~~~~~~g~-----~~L~~~dl~tG~~~~~l~~~---- 449 (789)
.-...|..+|..+++-... .+|+ ....+|..+++..++.+++.....+. +-|.+++. |+..+.+..+
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~ 212 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQW 212 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHH
Confidence 1134567777777752222 1332 22346788888886666666655542 34555554 3333445443
Q ss_pred ---CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 450 ---IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 450 ---~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.+.+.+++++.++..++++ | -.-+.+..+|.++++
T Consensus 213 ~~l~~Y~gSIa~~~~g~~ia~t--s-PrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 213 RRLNGYIGSIAADRDGRLIAVT--S-PRGGRVAVWDAATGR 250 (305)
T ss_pred HhhCCceEEEEEeCCCCEEEEE--C-CCCCEEEEEECCCCC
Confidence 3556778888888877663 3 355788899999985
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0018 Score=76.11 Aligned_cols=212 Identities=10% Similarity=0.009 Sum_probs=111.2
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+...+..+.||||+++|| +++-..+|.+||..|.+.+. .+....
T Consensus 128 H~~DV~Dv~Wsp~~~~lv-----S~s~DnsViiwn~~tF~~~~-vl~~H~------------------------------ 171 (942)
T KOG0973|consen 128 HDSDVLDVNWSPDDSLLV-----SVSLDNSVIIWNAKTFELLK-VLRGHQ------------------------------ 171 (942)
T ss_pred CCCccceeccCCCccEEE-----EecccceEEEEccccceeee-eeeccc------------------------------
Confidence 334577899999999998 45556789999999985443 333320
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
..+-+++|-|=|++|+-...+ +.|.+|+...=+.+.
T Consensus 172 -------------------------s~VKGvs~DP~Gky~ASqsdD-------------------rtikvwrt~dw~i~k 207 (942)
T KOG0973|consen 172 -------------------------SLVKGVSWDPIGKYFASQSDD-------------------RTLKVWRTSDWGIEK 207 (942)
T ss_pred -------------------------ccccceEECCccCeeeeecCC-------------------ceEEEEEcccceeeE
Confidence 035789999999999876543 235555543211111
Q ss_pred EE--EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-eeEEE
Q 003878 290 IL--CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVI 366 (789)
Q Consensus 290 ~~--~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 366 (789)
.. .|++.-...++..+.|||||++|+..-.-.. ..+-+-+++-.+=+ .-..++.+... +...|
T Consensus 208 ~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~-~~~~~~IieR~tWk-------------~~~~LvGH~~p~evvrF 273 (942)
T KOG0973|consen 208 SITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG-GKSTIAIIERGTWK-------------VDKDLVGHSAPVEVVRF 273 (942)
T ss_pred eeccchhhCCCcceeeecccCCCcCeecchhhccC-CcceeEEEecCCce-------------eeeeeecCCCceEEEEe
Confidence 10 1222112345678999999999975432221 12333344332200 00011111000 00111
Q ss_pred ec--------CCC-----EEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEE
Q 003878 367 AN--------DDT-----VFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQ 433 (789)
Q Consensus 367 s~--------dG~-----~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~ 433 (789)
.| +|. ..|.....++.+..|-+|....+. .--++-+-....|-+++|++|+..++..+.|| .|.
T Consensus 274 nP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R-Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DG--tV~ 350 (942)
T KOG0973|consen 274 NPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR-PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDG--TVA 350 (942)
T ss_pred ChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC-chhhhhhhhcCceeeeeEcCCCCeEEEEecCC--eEE
Confidence 11 111 122111112334456666553332 11111222345688999999888888888887 566
Q ss_pred EEECC
Q 003878 434 IRDLK 438 (789)
Q Consensus 434 ~~dl~ 438 (789)
++.++
T Consensus 351 ~i~Fe 355 (942)
T KOG0973|consen 351 LIHFE 355 (942)
T ss_pred EEEcc
Confidence 66554
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00074 Score=71.07 Aligned_cols=198 Identities=13% Similarity=0.077 Sum_probs=116.9
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
+..+.|+|+||+|+....-. ++-+|+.-+=.-| +|... ++.-+..+.||++|.|++-
T Consensus 99 V~~v~WtPeGRRLltgs~SG-------------------EFtLWNg~~fnFE--tilQa--HDs~Vr~m~ws~~g~wmiS 155 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSG-------------------EFTLWNGTSFNFE--TILQA--HDSPVRTMKWSHNGTWMIS 155 (464)
T ss_pred eeeEEEcCCCceeEeecccc-------------------cEEEecCceeeHH--HHhhh--hcccceeEEEccCCCEEEE
Confidence 57899999999999764321 1334443111111 12222 3344667899999999864
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND 396 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~ 396 (789)
.... .-|-+++..-... +......++ ...-..+||+...|+-.+ +++.|..+|...++.
T Consensus 156 gD~g-----G~iKyWqpnmnnV-----------k~~~ahh~e-aIRdlafSpnDskF~t~S----dDg~ikiWdf~~~ke 214 (464)
T KOG0284|consen 156 GDKG-----GMIKYWQPNMNNV-----------KIIQAHHAE-AIRDLAFSPNDSKFLTCS----DDGTIKIWDFRMPKE 214 (464)
T ss_pred cCCC-----ceEEecccchhhh-----------HHhhHhhhh-hhheeccCCCCceeEEec----CCCeEEEEeccCCch
Confidence 3221 2244444332100 000000001 112234788655544322 346788888766652
Q ss_pred eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCc
Q 003878 397 WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPG 476 (789)
Q Consensus 397 ~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~ 476 (789)
-+.|..+. ..+.++.|.+.+.++++...+. -|.+||.++|+.+-.+.....+|..+.++++++.|+ +. ..-.
T Consensus 215 e~vL~GHg--wdVksvdWHP~kgLiasgskDn--lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Ll-t~---skD~ 286 (464)
T KOG0284|consen 215 ERVLRGHG--WDVKSVDWHPTKGLIASGSKDN--LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLL-TG---SKDQ 286 (464)
T ss_pred hheeccCC--CCcceeccCCccceeEEccCCc--eeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeE-Ec---cCCc
Confidence 23443333 5578899998778999988886 689999999987656655667788889999997554 32 2334
Q ss_pred EEEEEECCCC
Q 003878 477 IVYQCNLKTE 486 (789)
Q Consensus 477 ~ly~~dl~tg 486 (789)
.+..+|..+.
T Consensus 287 ~~kv~DiR~m 296 (464)
T KOG0284|consen 287 SCKVFDIRTM 296 (464)
T ss_pred eEEEEehhHh
Confidence 6777777644
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.036 Score=55.88 Aligned_cols=186 Identities=10% Similarity=0.065 Sum_probs=106.3
Q ss_pred cceEEEEeC-CcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC-CcEEEEecCCCCeeEEEEEEecCCcEE
Q 003878 237 FSSIAWTHD-SKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS-EDILCWKDPEHPKYIFSGHVTEDGQYL 314 (789)
Q Consensus 237 ~~~~~wspD-g~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~-~~~~~~~~~~~~~~~~~~~~SpDG~~l 314 (789)
..+++|+|- |. |+++. .....|+.+....+.. .-..+..+ .+...+.+++|||.|++|
T Consensus 17 ~W~~awhp~~g~-ilAsc------------------g~Dk~vriw~~~~~~s~~ck~vld~-~hkrsVRsvAwsp~g~~L 76 (312)
T KOG0645|consen 17 VWSVAWHPGKGV-ILASC------------------GTDKAVRIWSTSSGDSWTCKTVLDD-GHKRSVRSVAWSPHGRYL 76 (312)
T ss_pred EEEEEeccCCce-EEEee------------------cCCceEEEEecCCCCcEEEEEeccc-cchheeeeeeecCCCcEE
Confidence 457999997 54 55552 2334577777764211 11122222 234557899999999999
Q ss_pred EEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee--EEEecCCCEEEEEECCCCCCceEEEEECC
Q 003878 315 VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY--EVIANDDTVFTFLTNKDAPKYKIIRVDLK 392 (789)
Q Consensus 315 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~s~dG~~l~~~tn~~~~~~~L~~~dl~ 392 (789)
+..+.+.. .-|| .-.++. -.. .....+...+. ..|+++|.+|+-.+.. -.++.+.++
T Consensus 77 a~aSFD~t---~~Iw--~k~~~e-----------fec-v~~lEGHEnEVK~Vaws~sG~~LATCSRD----KSVWiWe~d 135 (312)
T KOG0645|consen 77 ASASFDAT---VVIW--KKEDGE-----------FEC-VATLEGHENEVKCVAWSASGNYLATCSRD----KSVWIWEID 135 (312)
T ss_pred EEeeccce---EEEe--ecCCCc-----------eeE-EeeeeccccceeEEEEcCCCCEEEEeeCC----CeEEEEEec
Confidence 87765432 2233 222211 111 12222322222 4599999988854432 356666665
Q ss_pred CCCC---eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCc--eeeecccCCeeEEEeecccCCcEEE
Q 003878 393 EPND---WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGS--LLHQLPIEIGSVNAISARREDSVVF 466 (789)
Q Consensus 393 ~~~~---~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~--~~~~l~~~~~~v~~~s~s~d~~~l~ 466 (789)
..++ ...|-+|. +.+..+.|.|...|+++++-|..-++|.-+. ++. ....|.....++-.+.+++.|.++.
T Consensus 136 eddEfec~aVL~~Ht--qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~ 211 (312)
T KOG0645|consen 136 EDDEFECIAVLQEHT--QDVKHVIWHPTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLV 211 (312)
T ss_pred CCCcEEEEeeecccc--ccccEEEEcCCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEE
Confidence 4432 23444555 4567888888667999988886444444332 232 3345555566787888888887655
|
|
| >PRK04940 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0016 Score=62.98 Aligned_cols=119 Identities=8% Similarity=-0.037 Sum_probs=73.8
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCC
Q 003878 618 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWE 697 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~ 697 (789)
++++++|.|+||+.|.+++.++- .+ +|+..|.+.+...+..-.+. ..+|. --.++..+.++ ++.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~~-aVLiNPAv~P~~~L~~~ig~--~~~y~-~~~~~h~~eL~-------~~~--- 123 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--IR-QVIFNPNLFPEENMEGKIDR--PEEYA-DIATKCVTNFR-------EKN--- 123 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--CC-EEEECCCCChHHHHHHHhCC--Ccchh-hhhHHHHHHhh-------hcC---
Confidence 46999999999999999999864 34 44566766654432211111 01111 11223333333 111
Q ss_pred CCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHH
Q 003878 698 QNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYG 777 (789)
Q Consensus 698 ~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~ 777 (789)
.-..+++..+.|....+.++.+.++. . ..+.+.+|+.|.|.. ..+....+.+
T Consensus 124 --------p~r~~vllq~gDEvLDyr~a~~~y~~---------------~-y~~~v~~GGdH~f~~----fe~~l~~I~~ 175 (180)
T PRK04940 124 --------RDRCLVILSRNDEVLDSQRTAEELHP---------------Y-YEIVWDEEQTHKFKN----ISPHLQRIKA 175 (180)
T ss_pred --------cccEEEEEeCCCcccCHHHHHHHhcc---------------C-ceEEEECCCCCCCCC----HHHHHHHHHH
Confidence 23468888999999998887665532 1 136788999999964 2356778888
Q ss_pred HHH
Q 003878 778 FMA 780 (789)
Q Consensus 778 fl~ 780 (789)
|+.
T Consensus 176 F~~ 178 (180)
T PRK04940 176 FKT 178 (180)
T ss_pred HHh
Confidence 884
|
|
| >TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00045 Score=81.44 Aligned_cols=100 Identities=13% Similarity=0.071 Sum_probs=64.6
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChh--HHh-----cc---c---------ccCCc
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE--WHK-----GG---A---------LAKKQ 596 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~--~~~-----~~---~---------~~~~~ 596 (789)
...|+||++||-.+... .|.. ....|.++||.|+++|+||.|..... +.. .. . +++-.
T Consensus 447 ~g~P~VVllHG~~g~~~--~~~~-lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~r 523 (792)
T TIGR03502 447 DGWPVVIYQHGITGAKE--NALA-FAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLR 523 (792)
T ss_pred CCCcEEEEeCCCCCCHH--HHHH-HHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHH
Confidence 34689999999766533 2332 34455558999999999998865221 000 00 0 11223
Q ss_pred chHHHHHHHHHHHH------Hc----CCCCCCcEEEEeeChHHHHHHHHHHh
Q 003878 597 NCFDDFISASEYLI------SA----GYTQSRKLCIEGGSNGGLLVGACINQ 638 (789)
Q Consensus 597 ~~~~D~~~~~~~L~------~~----~~~d~~~i~i~G~S~GG~l~~~~~~~ 638 (789)
....|+......|. .. +..+..++.++|||+||.+...++..
T Consensus 524 Q~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 524 QSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred HHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 34577777766665 11 12456799999999999999888875
|
Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae |
| >PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00099 Score=69.77 Aligned_cols=121 Identities=18% Similarity=0.247 Sum_probs=84.6
Q ss_pred cEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC----CCCCHHHHHHHHcCCeEEEEEeecCCCCC
Q 003878 507 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT----PSFSVSRTILMRHLGAVFCIANIRGGGEY 582 (789)
Q Consensus 507 ~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~----~~~~~~~~~~l~~~G~~v~~~~~RG~g~~ 582 (789)
..+++.+.. |+ ..|....+.-++. ++..-||+.-|..+.-.. ......+..+..+.|..|+.+||||=|..
T Consensus 111 ~~kRv~Iq~-D~-~~IDt~~I~~~~a---~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpGVg~S 185 (365)
T PF05677_consen 111 SVKRVPIQY-DG-VKIDTMAIHQPEA---KPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPGVGSS 185 (365)
T ss_pred ceeeEEEee-CC-EEEEEEEeeCCCC---CCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCccccC
Confidence 456777765 89 9998887764432 455677777775332222 12334567777779999999999995531
Q ss_pred ChhHHhcccccCCcchHHHHHHHHHHHHHcC-CCCCCcEEEEeeChHHHHHHHHHHhC
Q 003878 583 GEEWHKGGALAKKQNCFDDFISASEYLISAG-YTQSRKLCIEGGSNGGLLVGACINQR 639 (789)
Q Consensus 583 g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~-~~d~~~i~i~G~S~GG~l~~~~~~~~ 639 (789)
.|.. ....-..|..++++||.++. .+.+++|++.|+|.||.+++.++.++
T Consensus 186 ------~G~~-s~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 186 ------TGPP-SRKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred ------CCCC-CHHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 1222 23445789999999999743 46899999999999999988866653
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.078 Score=66.31 Aligned_cols=167 Identities=8% Similarity=0.018 Sum_probs=89.5
Q ss_pred EEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCcc---Eeeeccc-cceeEEEecCCCEEEEEECC
Q 003878 304 SGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPF---VKLIDGF-DAQYEVIANDDTVFTFLTNK 379 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~---~~l~~~~-~~~~~~~s~dG~~l~~~tn~ 379 (789)
+++++|++..|++.... +..|++++..++... .+..+...... ......+ ...-..++|||+.||+...
T Consensus 687 gVa~dp~~g~LyVad~~----~~~I~v~d~~~g~v~--~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs- 759 (1057)
T PLN02919 687 DVCFEPVNEKVYIAMAG----QHQIWEYNISDGVTR--VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS- 759 (1057)
T ss_pred EEEEecCCCeEEEEECC----CCeEEEEECCCCeEE--EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC-
Confidence 57899987777766432 466888888664210 00000000000 0000000 0111247899998887543
Q ss_pred CCCCceEEEEECCCCCCeEEeccCC------------C--------CceeeeEEEecCCEEEEEEEeCCeEEEEEEECCC
Q 003878 380 DAPKYKIIRVDLKEPNDWFEVIPEA------------E--------RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN 439 (789)
Q Consensus 380 ~~~~~~L~~~dl~~~~~~~~l~~~~------------~--------~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~t 439 (789)
.+.+|.++|++++. ...+.... . ...-.++++++++.+|++...++ +|.++|+++
T Consensus 760 --~n~~Irv~D~~tg~-~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~--rIrviD~~t 834 (1057)
T PLN02919 760 --ESSSIRALDLKTGG-SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNH--KIKKLDPAT 834 (1057)
T ss_pred --CCCeEEEEECCCCc-EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCC--EEEEEECCC
Confidence 35789999988764 22111100 0 00113667777667777665554 899999986
Q ss_pred Cceeeeccc-C-------------CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 440 GSLLHQLPI-E-------------IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 440 G~~~~~l~~-~-------------~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+.. ..+.. . .....++..+++++ ++++ + ....+|..+|+.+++
T Consensus 835 g~v-~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVa-D--t~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 835 KRV-TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVA-D--TNNSLIRYLDLNKGE 891 (1057)
T ss_pred CeE-EEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEE-E--CCCCEEEEEECCCCc
Confidence 654 22211 0 01233566777876 5543 3 344589999998875
|
|
| >PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00031 Score=79.46 Aligned_cols=117 Identities=20% Similarity=0.123 Sum_probs=71.1
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCC---hhHHhcccccCCcchHHHHHHHHHHHHHcC-
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG---EEWHKGGALAKKQNCFDDFISASEYLISAG- 613 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g---~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~- 613 (789)
.|++|++-|-...............+..+.|..+++...|--|+.- ..-.+..+...-..++.|+...++++..+-
T Consensus 29 gpifl~~ggE~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~~ 108 (434)
T PF05577_consen 29 GPIFLYIGGEGPIEPFWINNGFMWELAKEFGALVVALEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKYN 108 (434)
T ss_dssp SEEEEEE--SS-HHHHHHH-HHHHHHHHHHTEEEEEE--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCccchhhhcCChHHHHHHHcCCcEEEeehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhhc
Confidence 7999999553211111111123456777899999999999755421 111111122233456899999999988653
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccc
Q 003878 614 YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 654 (789)
Q Consensus 614 ~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d 654 (789)
..+..+++++|+|+||.|++++-.++|++|.|+++.++++.
T Consensus 109 ~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 109 TAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp TGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred CCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 33456999999999999999999999999999988766543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C. |
| >TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0052 Score=67.57 Aligned_cols=83 Identities=12% Similarity=0.024 Sum_probs=57.1
Q ss_pred HHHHHHcCCeEEEEEeecCCCCCChhHHhccc--ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHH
Q 003878 560 RTILMRHLGAVFCIANIRGGGEYGEEWHKGGA--LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACIN 637 (789)
Q Consensus 560 ~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~--~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~ 637 (789)
....|.. |+-|.+.|.+ .+.. ...+.-.++|.+..+...++. +-++ +-++|.|+||.+++++++
T Consensus 122 ~V~~Ll~-g~dVYl~DW~----------~p~~vp~~~~~f~ldDYi~~l~~~i~~--~G~~-v~l~GvCqgG~~~laa~A 187 (406)
T TIGR01849 122 TVEALLP-DHDVYITDWV----------NARMVPLSAGKFDLEDYIDYLIEFIRF--LGPD-IHVIAVCQPAVPVLAAVA 187 (406)
T ss_pred HHHHHhC-CCcEEEEeCC----------CCCCCchhcCCCCHHHHHHHHHHHHHH--hCCC-CcEEEEchhhHHHHHHHH
Confidence 3455553 9999999954 3322 224556678887665555543 2344 999999999999876665
Q ss_pred hC-----CCceeEEEecCCccccc
Q 003878 638 QR-----PDLFGCALAHVGVMDML 656 (789)
Q Consensus 638 ~~-----pd~f~a~v~~~p~~d~~ 656 (789)
.. |+..+.++...+.+|..
T Consensus 188 l~a~~~~p~~~~sltlm~~PID~~ 211 (406)
T TIGR01849 188 LMAENEPPAQPRSMTLMGGPIDAR 211 (406)
T ss_pred HHHhcCCCCCcceEEEEecCccCC
Confidence 54 56788988888877764
|
This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some |
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.11 Score=58.70 Aligned_cols=244 Identities=14% Similarity=0.120 Sum_probs=141.2
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.+.++++|.+.+.||.+.. ...|-+|++..+=.....+++- +++
T Consensus 27 ~I~slA~s~kS~~lAvsRt-----~g~IEiwN~~~~w~~~~vi~g~---------------------~dr---------- 70 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRT-----DGNIEIWNLSNNWFLEPVIHGP---------------------EDR---------- 70 (691)
T ss_pred ceEEEEEeccCCceeeecc-----CCcEEEEccCCCceeeEEEecC---------------------CCC----------
Confidence 3677889999999996543 3479999998873332223221 111
Q ss_pred eeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 292 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~ 292 (789)
...+++|+ +|.+||-+. ....|--|++.+.. ....
T Consensus 71 -----------------------sIE~L~W~-e~~RLFS~g-------------------~sg~i~EwDl~~lk--~~~~ 105 (691)
T KOG2048|consen 71 -----------------------SIESLAWA-EGGRLFSSG-------------------LSGSITEWDLHTLK--QKYN 105 (691)
T ss_pred -----------------------ceeeEEEc-cCCeEEeec-------------------CCceEEEEecccCc--eeEE
Confidence 25899999 555666432 22346667766542 2222
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-ccee-EEEecCC
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQY-EVIANDD 370 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~-~~~s~dG 370 (789)
.+. ....+.+.+..|.+..+++.+.++ -++.++...+. .........- .... ..|.++|
T Consensus 106 ~d~--~gg~IWsiai~p~~~~l~IgcddG-----vl~~~s~~p~~------------I~~~r~l~rq~sRvLslsw~~~~ 166 (691)
T KOG2048|consen 106 IDS--NGGAIWSIAINPENTILAIGCDDG-----VLYDFSIGPDK------------ITYKRSLMRQKSRVLSLSWNPTG 166 (691)
T ss_pred ecC--CCcceeEEEeCCccceEEeecCCc-----eEEEEecCCce------------EEEEeecccccceEEEEEecCCc
Confidence 222 233456788899999999876443 46666655421 0011111100 0011 2388888
Q ss_pred CEEEEEECCCCCCceEEEEECCCCCCeEEecc------CCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceee
Q 003878 371 TVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP------EAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLH 444 (789)
Q Consensus 371 ~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~------~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~ 444 (789)
.+++. +..++.|..+|+..+.....+.. ..+...+-++.+-. +..++++...| .|..||.+.|...+
T Consensus 167 ~~i~~----Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G--~V~FWd~~~gTLiq 239 (691)
T KOG2048|consen 167 TKIAG----GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAG--TVTFWDSIFGTLIQ 239 (691)
T ss_pred cEEEe----cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCc--eEEEEcccCcchhh
Confidence 87773 34467899999988763221111 11222334444445 45555555554 79999998887655
Q ss_pred ecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 445 QLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 445 ~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
......+.|..++.+.+++.++.+ ..-+.+++|...+++
T Consensus 240 S~~~h~adVl~Lav~~~~d~vfsa----Gvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 240 SHSCHDADVLALAVADNEDRVFSA----GVDPKIIQYSLTTNK 278 (691)
T ss_pred hhhhhhcceeEEEEcCCCCeEEEc----cCCCceEEEEecCCc
Confidence 554456677778777777876643 334566777776664
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.02 Score=61.74 Aligned_cols=199 Identities=14% Similarity=0.127 Sum_probs=115.4
Q ss_pred ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 236 ~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
...+++|+.||..|++...+. .+..|+..... ...+.....| +.++.|+.+|.||+
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G-------------------~~riw~~~G~l---~~tl~~HkgP--I~slKWnk~G~yil 292 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDG-------------------EARIWNKDGNL---ISTLGQHKGP--IFSLKWNKKGTYIL 292 (524)
T ss_pred CcceEEecCCCCeEEEeecCc-------------------EEEEEecCchh---hhhhhccCCc--eEEEEEcCCCCEEE
Confidence 468999999999999875543 46666665432 2233322223 56899999999998
Q ss_pred EEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
-...+ ..+-++|..++... +.+ .+.. .......|-. .+.|+....+ ...+|++++.+.+.
T Consensus 293 S~~vD-----~ttilwd~~~g~~~----------q~f-~~~s-~~~lDVdW~~-~~~F~ts~td--~~i~V~kv~~~~P~ 352 (524)
T KOG0273|consen 293 SGGVD-----GTTILWDAHTGTVK----------QQF-EFHS-APALDVDWQS-NDEFATSSTD--GCIHVCKVGEDRPV 352 (524)
T ss_pred eccCC-----ccEEEEeccCceEE----------Eee-eecc-CCccceEEec-CceEeecCCC--ceEEEEEecCCCcc
Confidence 65433 34677888765311 001 1110 0001122433 3444432222 34677777777665
Q ss_pred CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCC--------cEEEE
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARRED--------SVVFI 467 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~--------~~l~~ 467 (789)
.+++.|. ..+..+.|.+.+.|+++.++|+ .|.+|....+.....+....-.|..+.|+|.+ +..+.
T Consensus 353 --~t~~GH~--g~V~alk~n~tg~LLaS~SdD~--TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~ 426 (524)
T KOG0273|consen 353 --KTFIGHH--GEVNALKWNPTGSLLASCSDDG--TLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLA 426 (524)
T ss_pred --eeeeccc--CceEEEEECCCCceEEEecCCC--eeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEE
Confidence 5666654 5678888987788999999998 67777765444434554443333344455443 32332
Q ss_pred EEcCCCCCcEEEEEECCCCC
Q 003878 468 SFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 468 ~~ss~~~P~~ly~~dl~tg~ 487 (789)
+. + .-.++..||...+.
T Consensus 427 sa-s--~dstV~lwdv~~gv 443 (524)
T KOG0273|consen 427 SA-S--FDSTVKLWDVESGV 443 (524)
T ss_pred Ee-e--cCCeEEEEEccCCc
Confidence 22 2 23578888888875
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.025 Score=64.19 Aligned_cols=279 Identities=17% Similarity=0.218 Sum_probs=146.9
Q ss_pred cEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccc
Q 003878 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 131 ~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
...+.-++++|.|-.|| .|+-...++|||++.+..+. .+.+. +| +.-+..+-|+-. |
T Consensus 105 e~Pvi~ma~~~~g~LlA-----tggaD~~v~VWdi~~~~~th-~fkG~-------gG----vVssl~F~~~~~-----~- 161 (775)
T KOG0319|consen 105 EAPVITMAFDPTGTLLA-----TGGADGRVKVWDIKNGYCTH-SFKGH-------GG----VVSSLLFHPHWN-----R- 161 (775)
T ss_pred CCCeEEEEEcCCCceEE-----eccccceEEEEEeeCCEEEE-EecCC-------Cc----eEEEEEeCCccc-----h-
Confidence 33455677899997666 45567799999999886543 22221 11 122223334432 1
Q ss_pred ceeeEEEeeeccccceeeeeeec-----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEE
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVS-----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYY 279 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~-----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (789)
.+|+++.-+++-.+|.+.. .....++++++|+..+++...+. .+.+
T Consensus 162 ----~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDk-------------------vi~v 218 (775)
T KOG0319|consen 162 ----WLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDK-------------------VIIV 218 (775)
T ss_pred ----hheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCc-------------------EEEE
Confidence 5789999999999999884 22357899999999998765432 3444
Q ss_pred EECCCCCCCcEE-EEecCC-------------------------------------------CCeeEEEEEEecCCcEEE
Q 003878 280 HFLGTKQSEDIL-CWKDPE-------------------------------------------HPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 280 ~~lg~~~~~~~~-~~~~~~-------------------------------------------~~~~~~~~~~SpDG~~l~ 315 (789)
|++-+-....++ +|+.-+ .+..........+++.++
T Consensus 219 wd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~ 298 (775)
T KOG0319|consen 219 WDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLL 298 (775)
T ss_pred eehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEE
Confidence 444211100000 011000 000000111122222222
Q ss_pred EEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce---eEEEecCCCEEEEEECCCCCCceEEEEECC
Q 003878 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ---YEVIANDDTVFTFLTNKDAPKYKIIRVDLK 392 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~ 392 (789)
+++ ...++++|.+++. +.+...++..+ ..++.|+.+++++.||. +..+|| ++.
T Consensus 299 vta------eQnl~l~d~~~l~--------------i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs--~~lr~y--~~~ 354 (775)
T KOG0319|consen 299 VTA------EQNLFLYDEDELT--------------IVKQIVGYNDEILDMKFLGPEESHLAVATNS--PELRLY--TLP 354 (775)
T ss_pred EEc------cceEEEEEccccE--------------EehhhcCCchhheeeeecCCccceEEEEeCC--CceEEE--ecC
Confidence 222 2335555554421 11112233222 23578888999999986 456676 776
Q ss_pred CCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce--eeecccCCeeEEEeecccCCcEEEEEEc
Q 003878 393 EPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL--LHQLPIEIGSVNAISARREDSVVFISFT 470 (789)
Q Consensus 393 ~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~--~~~l~~~~~~v~~~s~s~d~~~l~~~~s 470 (789)
+.. .+ +++... ..+-++.....+.++++.+.|..-.||+++-+.++. ......+..++..++.+..+..++++.+
T Consensus 355 ~~~-c~-ii~GH~-e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS 431 (775)
T KOG0319|consen 355 TSY-CQ-IIPGHT-EAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVS 431 (775)
T ss_pred CCc-eE-EEeCch-hheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEec
Confidence 665 34 554433 345566643436688888888755555553221211 1122223555666666666666666554
Q ss_pred CCCCCcEEEEEECCC
Q 003878 471 SFLIPGIVYQCNLKT 485 (789)
Q Consensus 471 s~~~P~~ly~~dl~t 485 (789)
+ -.++-.|++..
T Consensus 432 ~---D~tlK~W~l~~ 443 (775)
T KOG0319|consen 432 Q---DCTLKLWDLPK 443 (775)
T ss_pred C---CceEEEecCCC
Confidence 3 34566666543
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.027 Score=60.15 Aligned_cols=192 Identities=15% Similarity=0.129 Sum_probs=110.6
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.+..+++.|.|+|+..+.+ ...+-+.|+.+|..+.......+
T Consensus 305 ~V~~ls~h~tgeYllsAs~-----d~~w~Fsd~~~g~~lt~vs~~~s--------------------------------- 346 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASN-----DGTWAFSDISSGSQLTVVSDETS--------------------------------- 346 (506)
T ss_pred cceeeeeccCCcEEEEecC-----CceEEEEEccCCcEEEEEeeccc---------------------------------
Confidence 3678889999999986544 45788889999965532211100
Q ss_pred eeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 292 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~ 292 (789)
+....+.++.|||-- |... ..+..+.+|++-.+. .+.-
T Consensus 347 ---------------------~v~~ts~~fHpDgLi--fgtg-----------------t~d~~vkiwdlks~~--~~a~ 384 (506)
T KOG0289|consen 347 ---------------------DVEYTSAAFHPDGLI--FGTG-----------------TPDGVVKIWDLKSQT--NVAK 384 (506)
T ss_pred ---------------------cceeEEeeEcCCceE--Eecc-----------------CCCceEEEEEcCCcc--cccc
Confidence 003578999999843 3321 123468888886543 2233
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCE
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTV 372 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~ 372 (789)
|.. +..-+..++||.+|=||+..+.+ ..|.++|+...+ ..+-..+-......-..+...|++
T Consensus 385 Fpg--ht~~vk~i~FsENGY~Lat~add-----~~V~lwDLRKl~-----------n~kt~~l~~~~~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 385 FPG--HTGPVKAISFSENGYWLATAADD-----GSVKLWDLRKLK-----------NFKTIQLDEKKEVNSLSFDQSGTY 446 (506)
T ss_pred CCC--CCCceeEEEeccCceEEEEEecC-----CeEEEEEehhhc-----------ccceeeccccccceeEEEcCCCCe
Confidence 333 34446689999999999987753 238999997632 111111212211112236667888
Q ss_pred EEEEECCCCCCceEEEEECCCCCCeEEeccCCCCcee-eeEEEecCCEEEEEEEeC
Q 003878 373 FTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVL-ESATAVNLNQMIVSYLSD 427 (789)
Q Consensus 373 l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i-~~v~~~~~~~lv~~~~~~ 427 (789)
+.+. +..-+||.+.-.+.+ |+.+..-....-+ ..+.+.....+++...-+
T Consensus 447 L~~~----g~~l~Vy~~~k~~k~-W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd 497 (506)
T KOG0289|consen 447 LGIA----GSDLQVYICKKKTKS-WTEIKELADHSGLSTGVRFGEHAQYLASTSMD 497 (506)
T ss_pred EEee----cceeEEEEEeccccc-ceeeehhhhcccccceeeecccceEEeeccch
Confidence 7764 345788888866655 8776544332213 333333323444444433
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.12 Score=54.26 Aligned_cols=234 Identities=10% Similarity=-0.010 Sum_probs=115.7
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+..-.+...+||||++|.-+-+.....+..|-|||++.+-.....+.. +.-
T Consensus 49 gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s------~GI----------------------- 99 (305)
T PF07433_consen 49 GRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPS------HGI----------------------- 99 (305)
T ss_pred CCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecC------CCc-----------------------
Confidence 444467788999999987665555556789999999944222111111 111
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCcc-ccCCcccEEEEEECCCCCCC
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE-TDSNLYHEFYYHFLGTKQSE 288 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~lg~~~~~ 288 (789)
....+.|.|||++|++.-.. -.+-++.+.... -+.-.+. |.+.+..++.--
T Consensus 100 --------------------------GPHel~l~pDG~tLvVANGG-I~Thpd~GR~kLNl~tM~ps-L~~ld~~sG~ll 151 (305)
T PF07433_consen 100 --------------------------GPHELLLMPDGETLVVANGG-IETHPDSGRAKLNLDTMQPS-LVYLDARSGALL 151 (305)
T ss_pred --------------------------ChhhEEEcCCCCEEEEEcCC-CccCcccCceecChhhcCCc-eEEEecCCCcee
Confidence 13568899999999875321 111011100000 0111233 444444443322
Q ss_pred cEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCC--ceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEE
Q 003878 289 DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDP--VNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVI 366 (789)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~--~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 366 (789)
++.......+...+.-+++++||.-++-....+... ..-|.+..-.. + +..+. . +........++..+. .+
T Consensus 152 ~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-~--~~~~~-~--p~~~~~~l~~Y~gSI-a~ 224 (305)
T PF07433_consen 152 EQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG-A--LRLLP-A--PEEQWRRLNGYIGSI-AA 224 (305)
T ss_pred eeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC-c--ceecc-C--ChHHHHhhCCceEEE-EE
Confidence 222221122333466788999998776655544321 12233332221 0 00000 0 000001112232222 36
Q ss_pred ecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC
Q 003878 367 ANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 367 s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~ 438 (789)
+.+|+.+++.+-++ ..+..+|.+++. +...++-. ...+++..+ +.++++. |...+...+..
T Consensus 225 ~~~g~~ia~tsPrG---g~~~~~d~~tg~-~~~~~~l~---D~cGva~~~-~~f~~ss---G~G~~~~~~~~ 285 (305)
T PF07433_consen 225 DRDGRLIAVTSPRG---GRVAVWDAATGR-LLGSVPLP---DACGVAPTD-DGFLVSS---GQGQLIRLSPD 285 (305)
T ss_pred eCCCCEEEEECCCC---CEEEEEECCCCC-EeeccccC---ceeeeeecC-CceEEeC---CCccEEEccCc
Confidence 77888888877664 578888998886 44444333 356777776 4433322 23345554443
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.013 Score=60.28 Aligned_cols=180 Identities=14% Similarity=0.027 Sum_probs=95.2
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC-c--EEEEecCCC-CeeEEEEEEecC-Cc
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE-D--ILCWKDPEH-PKYIFSGHVTED-GQ 312 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~-~--~~~~~~~~~-~~~~~~~~~SpD-G~ 312 (789)
.++.|||||.+||- +..+.|.++++.-+... + ..++..... ...+.-+++||- .+
T Consensus 162 hsL~Fs~DGeqlfa--------------------GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~ 221 (406)
T KOG2919|consen 162 HSLQFSPDGEQLFA--------------------GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSK 221 (406)
T ss_pred eeEEecCCCCeEee--------------------cccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCc
Confidence 68999999999983 34445666666322211 1 112221111 122345678884 44
Q ss_pred EEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-cccceeEEEecCCCEEEEEECCCCCCceEEEEEC
Q 003878 313 YLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDL 391 (789)
Q Consensus 313 ~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl 391 (789)
.++..+... ...||-.+-. .|+..+.. +.....-.|.+||.+|+.-+.+ .-+|..+|+
T Consensus 222 ~~a~gsY~q---~~giy~~~~~---------------~pl~llggh~gGvThL~~~edGn~lfsGaRk---~dkIl~WDi 280 (406)
T KOG2919|consen 222 TLAVGSYGQ---RVGIYNDDGR---------------RPLQLLGGHGGGVTHLQWCEDGNKLFSGARK---DDKILCWDI 280 (406)
T ss_pred ceeeecccc---eeeeEecCCC---------------CceeeecccCCCeeeEEeccCcCeecccccC---CCeEEEEee
Confidence 666655432 2445543211 12222222 1122234589999998854333 357999998
Q ss_pred CCCCCeEEec---cCCC--CceeeeEEEecCCEEEEEEEeCCeEEEEEEECCC-CceeeecccCCeeEEEeecccCCc
Q 003878 392 KEPNDWFEVI---PEAE--RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN-GSLLHQLPIEIGSVNAISARREDS 463 (789)
Q Consensus 392 ~~~~~~~~l~---~~~~--~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~t-G~~~~~l~~~~~~v~~~s~s~d~~ 463 (789)
..-. .+|. .+.. .+.| -+.+.+.+.++++...+| .|.+||+++ |..+..+......+.++++.|-=.
T Consensus 281 R~~~--~pv~~L~rhv~~TNQRI-~FDld~~~~~LasG~tdG--~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mp 353 (406)
T KOG2919|consen 281 RYSR--DPVYALERHVGDTNQRI-LFDLDPKGEILASGDTDG--SVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMP 353 (406)
T ss_pred hhcc--chhhhhhhhccCccceE-EEecCCCCceeeccCCCc--cEEEEecCCCCCcccccccccccccceecCcccc
Confidence 7543 1222 1211 1222 234445567888887776 688899986 554222222255566777776544
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.025 Score=60.85 Aligned_cols=220 Identities=13% Similarity=0.119 Sum_probs=119.8
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccccee
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFF 213 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 213 (789)
+..+.-+|+|.+|+ .|....+||+|.+.||+.+-. +...
T Consensus 84 v~al~s~n~G~~l~-----ag~i~g~lYlWelssG~LL~v-~~aH----------------------------------- 122 (476)
T KOG0646|consen 84 VHALASSNLGYFLL-----AGTISGNLYLWELSSGILLNV-LSAH----------------------------------- 122 (476)
T ss_pred eeeeecCCCceEEE-----eecccCcEEEEEeccccHHHH-HHhh-----------------------------------
Confidence 56788999999998 455677999999999976531 1111
Q ss_pred eEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCC---C----C
Q 003878 214 FFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT---K----Q 286 (789)
Q Consensus 214 ~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~---~----~ 286 (789)
|| ...-+.||.||+.|+-..++. .|..|.+-. + .
T Consensus 123 ------------YQ--------~ITcL~fs~dgs~iiTgskDg-------------------~V~vW~l~~lv~a~~~~~ 163 (476)
T KOG0646|consen 123 ------------YQ--------SITCLKFSDDGSHIITGSKDG-------------------AVLVWLLTDLVSADNDHS 163 (476)
T ss_pred ------------cc--------ceeEEEEeCCCcEEEecCCCc-------------------cEEEEEEEeecccccCCC
Confidence 00 124567787877776443321 233333211 0 1
Q ss_pred CCcEEEEecCCCCeeEEEEEEecCCcEE-EEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEE
Q 003878 287 SEDILCWKDPEHPKYIFSGHVTEDGQYL-VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV 365 (789)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~SpDG~~l-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 365 (789)
.+....|. +|...+.++..++.|-.- +++++. ...+.++|+..+. .+...+......-..
T Consensus 164 ~~p~~~f~--~HtlsITDl~ig~Gg~~~rl~TaS~----D~t~k~wdlS~g~-------------LLlti~fp~si~av~ 224 (476)
T KOG0646|consen 164 VKPLHIFS--DHTLSITDLQIGSGGTNARLYTASE----DRTIKLWDLSLGV-------------LLLTITFPSSIKAVA 224 (476)
T ss_pred ccceeeec--cCcceeEEEEecCCCccceEEEecC----CceEEEEEeccce-------------eeEEEecCCcceeEE
Confidence 12223333 233334555555554221 233321 3457778887752 122222222112233
Q ss_pred EecCCCEEEEEECCCCCCceEEEEECCCC----------------CCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCe
Q 003878 366 IANDDTVFTFLTNKDAPKYKIIRVDLKEP----------------NDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVK 429 (789)
Q Consensus 366 ~s~dG~~l~~~tn~~~~~~~L~~~dl~~~----------------~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~ 429 (789)
.+|-+..+|+-+. .+.|+..++.+- .....++.+.....|.-++++-|+.+++++..+|
T Consensus 225 lDpae~~~yiGt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg- 299 (476)
T KOG0646|consen 225 LDPAERVVYIGTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDG- 299 (476)
T ss_pred EcccccEEEecCC----cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCC-
Confidence 6776666665332 345555544210 1234455555434677778877788999999998
Q ss_pred EEEEEEECCCCceeeecccCCeeEEEeec
Q 003878 430 YVLQIRDLKNGSLLHQLPIEIGSVNAISA 458 (789)
Q Consensus 430 ~~L~~~dl~tG~~~~~l~~~~~~v~~~s~ 458 (789)
.+.+||..+.+.++.+..-.+.|+.+..
T Consensus 300 -~VcvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 300 -KVCVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred -CEEEEecchHHHHHHHhhhccccceeEe
Confidence 7899999866666666532344544443
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0015 Score=77.01 Aligned_cols=212 Identities=13% Similarity=0.062 Sum_probs=123.0
Q ss_pred ccceEEEEeCCcE---EEEEEccCCCCCCCCCCCccccCCcccEEEEEECCC--CCCCcEEEEecCCCCeeEEEEEEecC
Q 003878 236 KFSSIAWTHDSKG---FFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT--KQSEDILCWKDPEHPKYIFSGHVTED 310 (789)
Q Consensus 236 ~~~~~~wspDg~~---i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~--~~~~~~~~~~~~~~~~~~~~~~~SpD 310 (789)
+|..++|++-|+. |+... ..+-.|-+++... ...+..++.....+...+.++.+.+.
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG------------------~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~ 127 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGG------------------LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF 127 (1049)
T ss_pred cceeeeecccCCCccceeecc------------------ccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc
Confidence 5788999997776 34332 2223355555443 12222233333445566778999999
Q ss_pred CcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc--cceeEEEecCCCEEEEEECCCCCCceEEE
Q 003878 311 GQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF--DAQYEVIANDDTVFTFLTNKDAPKYKIIR 388 (789)
Q Consensus 311 G~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~s~dG~~l~~~tn~~~~~~~L~~ 388 (789)
+.-++.+. +.+.+|+++|+.... . +........ +.....|-..-++++-. ...+++...
T Consensus 128 q~nlLASG----a~~geI~iWDlnn~~-t-----------P~~~~~~~~~~eI~~lsWNrkvqhILAS---~s~sg~~~i 188 (1049)
T KOG0307|consen 128 QGNLLASG----ADDGEILIWDLNKPE-T-----------PFTPGSQAPPSEIKCLSWNRKVSHILAS---GSPSGRAVI 188 (1049)
T ss_pred CCceeecc----CCCCcEEEeccCCcC-C-----------CCCCCCCCCcccceEeccchhhhHHhhc---cCCCCCcee
Confidence 88444332 125789999998721 1 111100000 11111232222233321 235678899
Q ss_pred EECCCCCCeEEeccCCCCceeeeEEEecC--CEEEEEEEeCCeEEEEEEECCCC-ceeeecccCCeeEEEeecccCCcEE
Q 003878 389 VDLKEPNDWFEVIPEAERDVLESATAVNL--NQMIVSYLSDVKYVLQIRDLKNG-SLLHQLPIEIGSVNAISARREDSVV 465 (789)
Q Consensus 389 ~dl~~~~~~~~l~~~~~~~~i~~v~~~~~--~~lv~~~~~~g~~~L~~~dl~tG-~~~~~l~~~~~~v~~~s~s~d~~~l 465 (789)
+|++..+....+...........++|.++ .++++...++..+.|.+||+.-- ...+.++.+...+-+++|.+.+.++
T Consensus 189 WDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~l 268 (1049)
T KOG0307|consen 189 WDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRL 268 (1049)
T ss_pred ccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchh
Confidence 99987642222322222244678899985 46888888888889999997632 2334555555556678898877777
Q ss_pred EEEEcCCCCCcEEEEEECCCCC
Q 003878 466 FISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 466 ~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+++ -..-.+++.+|.+|++
T Consensus 269 llS---sgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 269 LLS---SGKDNRIICWNPNTGE 287 (1049)
T ss_pred hhc---ccCCCCeeEecCCCce
Confidence 764 3556789999999985
|
|
| >COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.001 Score=67.88 Aligned_cols=103 Identities=17% Similarity=0.039 Sum_probs=65.2
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
.|.++++||.++.................+ |.++.+|.||.|... . . ........+-++.+.+.-. .
T Consensus 21 ~~~i~~~hg~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~g~g~s~----~---~---~~~~~~~~~~~~~~~~~~~--~ 87 (282)
T COG0596 21 GPPLVLLHGFPGSSSVWRPVFKVLPALAAR-YRVIAPDLRGHGRSD----P---A---GYSLSAYADDLAALLDALG--L 87 (282)
T ss_pred CCeEEEeCCCCCchhhhHHHHHHhhccccc-eEEEEecccCCCCCC----c---c---cccHHHHHHHHHHHHHHhC--C
Confidence 559999999886654433311111111113 999999999877543 0 0 1111222333333333311 2
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 618 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
.++.+.|+|+||.++..++.++|++++++|...+..
T Consensus 88 ~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~ 123 (282)
T COG0596 88 EKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAP 123 (282)
T ss_pred CceEEEEecccHHHHHHHHHhcchhhheeeEecCCC
Confidence 349999999999999999999999999998877543
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.061 Score=57.34 Aligned_cols=151 Identities=16% Similarity=0.165 Sum_probs=87.1
Q ss_pred EEEEecCCcEEEEEEE---c-CC--CCceEEEEEECCCCCCCcccccccCCCCccEeeecc-ccc-eeEEEecCCCEEEE
Q 003878 304 SGHVTEDGQYLVMCIE---E-NC--DPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FDA-QYEVIANDDTVFTF 375 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~---~-~~--~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~~s~dG~~l~~ 375 (789)
.....|||+.-+-... . .. .....||.++..++ ..++..+ ... .--.|||||+.+|+
T Consensus 115 D~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~---------------~~~l~~~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 115 DGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG---------------VVRLLDDDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC---------------EEEeecCcEEecCceEECCCCCEEEE
Confidence 4567888876543332 0 11 12346888886432 1222222 111 11349999999997
Q ss_pred EECCCCCCceEEEEECCC--CC---C-eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC
Q 003878 376 LTNKDAPKYKIIRVDLKE--PN---D-WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE 449 (789)
Q Consensus 376 ~tn~~~~~~~L~~~dl~~--~~---~-~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~ 449 (789)
.-. ...+|++++++. +. . ....... +...-.++....++.+++....+| ..|.+++++ |+....+.+|
T Consensus 180 aDT---~~~~i~r~~~d~~~g~~~~~~~~~~~~~-~~G~PDG~~vDadG~lw~~a~~~g-~~v~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 180 ADT---PANRIHRYDLDPATGPIGGRRGFVDFDE-EPGLPDGMAVDADGNLWVAAVWGG-GRVVRFNPD-GKLLGEIKLP 253 (307)
T ss_pred EeC---CCCeEEEEecCcccCccCCcceEEEccC-CCCCCCceEEeCCCCEEEecccCC-ceEEEECCC-CcEEEEEECC
Confidence 533 457899998762 11 1 1122222 234456777777566765544443 578999998 8887888887
Q ss_pred CeeEEEeec-ccCCcEEEEEEcCCCCC
Q 003878 450 IGSVNAISA-RREDSVVFISFTSFLIP 475 (789)
Q Consensus 450 ~~~v~~~s~-s~d~~~l~~~~ss~~~P 475 (789)
...++...+ .++.+.|+++......+
T Consensus 254 ~~~~t~~~FgG~~~~~L~iTs~~~~~~ 280 (307)
T COG3386 254 VKRPTNPAFGGPDLNTLYITSARSGMS 280 (307)
T ss_pred CCCCccceEeCCCcCEEEEEecCCCCC
Confidence 433333332 35678888877666554
|
|
| >PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0023 Score=62.10 Aligned_cols=148 Identities=11% Similarity=0.099 Sum_probs=88.7
Q ss_pred EEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCc
Q 003878 540 CLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRK 619 (789)
Q Consensus 540 ~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~ 619 (789)
++|++-|-.|. ..++......|+++|+.|+-+|-+- .-|. ....+.+-.|+...+++..++- ..++
T Consensus 4 ~~v~~SGDgGw---~~~d~~~a~~l~~~G~~VvGvdsl~-----Yfw~----~rtP~~~a~Dl~~~i~~y~~~w--~~~~ 69 (192)
T PF06057_consen 4 LAVFFSGDGGW---RDLDKQIAEALAKQGVPVVGVDSLR-----YFWS----ERTPEQTAADLARIIRHYRARW--GRKR 69 (192)
T ss_pred EEEEEeCCCCc---hhhhHHHHHHHHHCCCeEEEechHH-----HHhh----hCCHHHHHHHHHHHHHHHHHHh--CCce
Confidence 34455443332 2556666777888999999999542 1122 2233455688888888877762 3469
Q ss_pred EEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCC
Q 003878 620 LCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQN 699 (789)
Q Consensus 620 i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~ 699 (789)
+.++|.|+|+-++-.+.++-|.-.++-|..+-++.+.....|.... ...+|.+... .++.+...+.++
T Consensus 70 vvLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~~~dFeihv--~~wlg~~~~~------~~~~~~pei~~l---- 137 (192)
T PF06057_consen 70 VVLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSPSTTADFEIHV--SGWLGMGGDD------AAYPVIPEIAKL---- 137 (192)
T ss_pred EEEEeecCCchhHHHHHhhCCHHHHhheeEEEEeccCCcceEEEEh--hhhcCCCCCc------ccCCchHHHHhC----
Confidence 9999999999998898888887555555554444433332222111 1112333221 123344444454
Q ss_pred CCCCCCCCeEEEEecCCCC
Q 003878 700 PDKPFQYPSTLLLTADHDD 718 (789)
Q Consensus 700 ~~~~~~~pp~Li~~g~~D~ 718 (789)
...|++++.|.++.
T Consensus 138 -----~~~~v~CiyG~~E~ 151 (192)
T PF06057_consen 138 -----PPAPVQCIYGEDED 151 (192)
T ss_pred -----CCCeEEEEEcCCCC
Confidence 34699999998764
|
VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium []. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.033 Score=61.43 Aligned_cols=188 Identities=11% Similarity=0.096 Sum_probs=112.7
Q ss_pred EEEeEEeCCC--CcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccc
Q 003878 133 ALIKVSVSED--AKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 133 ~~~~~~~SpD--g~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
.++.+++||- .-.||+-+-..++--..++|+-..-+...+ .+ .+--|...|.-.+.|=..
T Consensus 167 ~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~-~~-----------------a~ksFFkadkvqm~WN~~ 228 (566)
T KOG2315|consen 167 GITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ-PV-----------------ANKSFFKADKVQMKWNKL 228 (566)
T ss_pred ceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc-hh-----------------hhccccccceeEEEeccC
Confidence 3566677775 445665554455556678887765221111 11 111233344445666666
Q ss_pred ceeeEEEeeeccccce-------eeeeeec-------ccc----cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCC
Q 003878 211 IFFFFYLFSLVKSTIY-------SFWSVVS-------QFK----FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN 272 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~-------~l~~~~~-------~~~----~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~ 272 (789)
+-..=+|.++|-+.+. .||-+.. ++. +..+.|+|+|+.|+++-.-
T Consensus 229 gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGf----------------- 291 (566)
T KOG2315|consen 229 GTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGF----------------- 291 (566)
T ss_pred CceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEec-----------------
Confidence 6666778888866643 5666655 222 4678999999999887533
Q ss_pred cccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCcc
Q 003878 273 LYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPF 352 (789)
Q Consensus 273 ~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 352 (789)
-|.++-++++... .+++-++.+.. .+-|+|-|++|++..-... ..++-++|+.+.+ .+
T Consensus 292 MPAkvtifnlr~~-----~v~df~egpRN--~~~fnp~g~ii~lAGFGNL--~G~mEvwDv~n~K-------------~i 349 (566)
T KOG2315|consen 292 MPAKVTIFNLRGK-----PVFDFPEGPRN--TAFFNPHGNIILLAGFGNL--PGDMEVWDVPNRK-------------LI 349 (566)
T ss_pred ccceEEEEcCCCC-----EeEeCCCCCcc--ceEECCCCCEEEEeecCCC--CCceEEEeccchh-------------hc
Confidence 3455777777543 45555544432 4678999999999876554 3455667776621 01
Q ss_pred EeeeccccceeEEEecCCCEEEEEEC
Q 003878 353 VKLIDGFDAQYEVIANDDTVFTFLTN 378 (789)
Q Consensus 353 ~~l~~~~~~~~~~~s~dG~~l~~~tn 378 (789)
.. ....+..+..|+|||++|+..|.
T Consensus 350 ~~-~~a~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 350 AK-FKAANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred cc-cccCCceEEEEcCCCcEEEEEec
Confidence 11 11223356679999999886665
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.045 Score=56.33 Aligned_cols=227 Identities=16% Similarity=0.122 Sum_probs=123.7
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
.++..+++| |.++| +|+..-+|+|+|+.+...+...+... |-..+| ..++.
T Consensus 44 ~sitavAVs--~~~~a-----SGssDetI~IYDm~k~~qlg~ll~Ha--------gsitaL----~F~~~---------- 94 (362)
T KOG0294|consen 44 GSITALAVS--GPYVA-----SGSSDETIHIYDMRKRKQLGILLSHA--------GSITAL----KFYPP---------- 94 (362)
T ss_pred cceeEEEec--ceeEe-----ccCCCCcEEEEeccchhhhcceeccc--------cceEEE----EecCC----------
Confidence 445555554 77877 56667799999999886544222111 100000 00110
Q ss_pred eeeEEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHF 281 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (789)
++..-|.++.++|..-+|.... .-++..++-.|-|| |+.+- ++...+..|+
T Consensus 95 ~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsV------------------g~D~~lr~WN 155 (362)
T KOG0294|consen 95 LSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGK-LALSV------------------GGDQVLRTWN 155 (362)
T ss_pred cchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCc-eEEEE------------------cCCceeeeeh
Confidence 0012377888999999998766 22246677777775 44442 2334577777
Q ss_pred CCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc
Q 003878 282 LGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA 361 (789)
Q Consensus 282 lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (789)
|-.+...-++ ...... ..+.|+|.|.+.++...+ .-+||-.+.+.. +..+...-..
T Consensus 156 LV~Gr~a~v~--~L~~~a---t~v~w~~~Gd~F~v~~~~----~i~i~q~d~A~v---------------~~~i~~~~r~ 211 (362)
T KOG0294|consen 156 LVRGRVAFVL--NLKNKA---TLVSWSPQGDHFVVSGRN----KIDIYQLDNASV---------------FREIENPKRI 211 (362)
T ss_pred hhcCccceee--ccCCcc---eeeEEcCCCCEEEEEecc----EEEEEecccHhH---------------hhhhhccccc
Confidence 7554333222 222222 248999999988877643 244555544331 1111111000
Q ss_pred eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec--CCEEEEEEEeCCeEEEEEEECCC
Q 003878 362 QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN--LNQMIVSYLSDVKYVLQIRDLKN 439 (789)
Q Consensus 362 ~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~--~~~lv~~~~~~g~~~L~~~dl~t 439 (789)
....| -++..+++ +..+..+...|.+.......+..|. ..+.++.+.. ...++++.+.+| .|.+||++.
T Consensus 212 l~~~~-l~~~~L~v----G~d~~~i~~~D~ds~~~~~~~~AH~--~RVK~i~~~~~~~~~~lvTaSSDG--~I~vWd~~~ 282 (362)
T KOG0294|consen 212 LCATF-LDGSELLV----GGDNEWISLKDTDSDTPLTEFLAHE--NRVKDIASYTNPEHEYLVTASSDG--FIKVWDIDM 282 (362)
T ss_pred eeeee-cCCceEEE----ecCCceEEEeccCCCccceeeecch--hheeeeEEEecCCceEEEEeccCc--eEEEEEccc
Confidence 11112 24555553 2234557777766544345566665 4577777443 357888888888 677888764
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.16 Score=63.51 Aligned_cols=126 Identities=15% Similarity=0.108 Sum_probs=67.8
Q ss_pred EEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCC--CccEeee--cc------c-cceeEEEecCCCE
Q 003878 304 SGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL--LPFVKLI--DG------F-DAQYEVIANDDTV 372 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~--~~~~~l~--~~------~-~~~~~~~s~dG~~ 372 (789)
+++++|||++|++.... ++.|+++|++++.... +..++.. ......- ++ + ...-..++++|+
T Consensus 744 GIavspdG~~LYVADs~----n~~Irv~D~~tg~~~~--~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~- 816 (1057)
T PLN02919 744 GISLSPDLKELYIADSE----SSSIRALDLKTGGSRL--LAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ- 816 (1057)
T ss_pred EEEEeCCCCEEEEEECC----CCeEEEEECCCCcEEE--EEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-
Confidence 57899999998876432 4679999987642100 0000000 0000000 00 0 001123677776
Q ss_pred EEEEECCCCCCceEEEEECCCCCCeEEeccCCC------------CceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCC
Q 003878 373 FTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAE------------RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNG 440 (789)
Q Consensus 373 l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~------------~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG 440 (789)
+|+. + ..+.+|.++|.+++. ...+..... -....++++++++++++.-..+ ..|+++|++++
T Consensus 817 LYVA-D--s~N~rIrviD~~tg~-v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N--n~Irvid~~~~ 890 (1057)
T PLN02919 817 IYVA-D--SYNHKIKKLDPATKR-VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN--SLIRYLDLNKG 890 (1057)
T ss_pred EEEE-E--CCCCEEEEEECCCCe-EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC--CEEEEEECCCC
Confidence 5543 3 246789999987764 333332110 0123467787767777765544 48999999876
Q ss_pred ce
Q 003878 441 SL 442 (789)
Q Consensus 441 ~~ 442 (789)
+.
T Consensus 891 ~~ 892 (1057)
T PLN02919 891 EA 892 (1057)
T ss_pred cc
Confidence 54
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.019 Score=57.20 Aligned_cols=199 Identities=11% Similarity=0.076 Sum_probs=110.7
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
..++||+....++++.... -.+.+++++. .+..+.+|++... -+.++.|++-.++.++.
T Consensus 64 fdV~Wse~~e~~~~~a~GD------------------GSLrl~d~~~-~s~Pi~~~kEH~~--EV~Svdwn~~~r~~~lt 122 (311)
T KOG0277|consen 64 FDVAWSENHENQVIAASGD------------------GSLRLFDLTM-PSKPIHKFKEHKR--EVYSVDWNTVRRRIFLT 122 (311)
T ss_pred eEeeecCCCcceEEEEecC------------------ceEEEeccCC-CCcchhHHHhhhh--heEEeccccccceeEEe
Confidence 6799999888777775322 2367777553 3455666766543 35688999988887776
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCCEEEEEECCCCCCceEEEEECCCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND 396 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~ 396 (789)
+ ..+.+ |.+++..-. ..+..........| ..|+|.-.-++..+ .+++.+-.+|++.+..
T Consensus 123 s--SWD~T--iKLW~~~r~-------------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~---Sgd~~l~lwdvr~~gk 182 (311)
T KOG0277|consen 123 S--SWDGT--IKLWDPNRP-------------NSVQTFNGHNSCIYQAAFSPHIPNLFASA---SGDGTLRLWDVRSPGK 182 (311)
T ss_pred e--ccCCc--eEeecCCCC-------------cceEeecCCccEEEEEecCCCCCCeEEEc---cCCceEEEEEecCCCc
Confidence 6 33223 444443321 11222222222234 34787543333222 2346677778776542
Q ss_pred eEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCc-eeeecccCCeeEEEeecccCCcEEEEEEcCCCC
Q 003878 397 WFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGS-LLHQLPIEIGSVNAISARREDSVVFISFTSFLI 474 (789)
Q Consensus 397 ~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~-~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~ 474 (789)
...+..+. .-+....|++ +..++++...|+ -|+.||+..=+ .+.+|..+...|..+.+||....++.+. |...
T Consensus 183 ~~~i~ah~--~Eil~cdw~ky~~~vl~Tg~vd~--~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSa-sYDm 257 (311)
T KOG0277|consen 183 FMSIEAHN--SEILCCDWSKYNHNVLATGGVDN--LVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASA-SYDM 257 (311)
T ss_pred eeEEEecc--ceeEeecccccCCcEEEecCCCc--eEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhc-cccc
Confidence 22232333 2345666776 467787777765 68899986322 2233433456778888888766555433 3333
Q ss_pred CcEEEEEECC
Q 003878 475 PGIVYQCNLK 484 (789)
Q Consensus 475 P~~ly~~dl~ 484 (789)
++..+|..
T Consensus 258 --T~riw~~~ 265 (311)
T KOG0277|consen 258 --TVRIWDPE 265 (311)
T ss_pred --eEEecccc
Confidence 34444444
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.048 Score=59.52 Aligned_cols=196 Identities=11% Similarity=0.030 Sum_probs=112.5
Q ss_pred cceEEEEeC--CcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC-cEEEEecCCCCeeEEEEEEecCCcE
Q 003878 237 FSSIAWTHD--SKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE-DILCWKDPEHPKYIFSGHVTEDGQY 313 (789)
Q Consensus 237 ~~~~~wspD--g~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~-~~~~~~~~~~~~~~~~~~~SpDG~~ 313 (789)
+..+.|||- +..|+|..-.. .+.+.++.++.++..... ...+++.. -..+.|-+.|++
T Consensus 176 i~dFsisP~~n~~~la~~tPEk--------------~~kpa~~~i~sIp~~s~l~tk~lfk~~-----~~qLkW~~~g~~ 236 (561)
T COG5354 176 ILDFSISPEGNHDELAYWTPEK--------------LNKPAMVRILSIPKNSVLVTKNLFKVS-----GVQLKWQVLGKY 236 (561)
T ss_pred eeeEEecCCCCCceEEEEcccc--------------CCCCcEEEEEEccCCCeeeeeeeEeec-----ccEEEEecCCce
Confidence 478899995 55677663211 456677777777632211 11223221 246889999999
Q ss_pred EEEEEEcCCC------CceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCCEEEEEECCCCCCceE
Q 003878 314 LVMCIEENCD------PVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKI 386 (789)
Q Consensus 314 l~~~~~~~~~------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~~l~~~tn~~~~~~~L 386 (789)
|++....+.. ..+.+|++++... ..+...... +... ..|+|+++.|.+++... -..+
T Consensus 237 ll~l~~t~~ksnKsyfgesnLyl~~~~e~------------~i~V~~~~~--~pVhdf~W~p~S~~F~vi~g~~--pa~~ 300 (561)
T COG5354 237 LLVLVMTHTKSNKSYFGESNLYLLRITER------------SIPVEKDLK--DPVHDFTWEPLSSRFAVISGYM--PASV 300 (561)
T ss_pred EEEEEEEeeecccceeccceEEEEeeccc------------ccceecccc--ccceeeeecccCCceeEEeccc--ccce
Confidence 9887654421 2367899988752 112221112 2222 24999999999887432 2456
Q ss_pred EEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec-ccCCeeEEEeecccCCcEE
Q 003878 387 IRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL-PIEIGSVNAISARREDSVV 465 (789)
Q Consensus 387 ~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l-~~~~~~v~~~s~s~d~~~l 465 (789)
...|+.+. .+-.+|+..... .-++... .++++..-.+-...+-+++.. |+- ..+ .+.....+...|+||+..+
T Consensus 301 s~~~lr~N--l~~~~Pe~~rNT-~~fsp~~-r~il~agF~nl~gni~i~~~~-~rf-~~~~~~~~~n~s~~~wspd~qF~ 374 (561)
T COG5354 301 SVFDLRGN--LRFYFPEQKRNT-IFFSPHE-RYILFAGFDNLQGNIEIFDPA-GRF-KVAGAFNGLNTSYCDWSPDGQFY 374 (561)
T ss_pred eecccccc--eEEecCCccccc-ccccCcc-cEEEEecCCccccceEEeccC-Cce-EEEEEeecCCceEeeccCCceEE
Confidence 66777653 455566654322 2233333 567776777767788889987 543 122 2221122234688999877
Q ss_pred EEEEcCCC
Q 003878 466 FISFTSFL 473 (789)
Q Consensus 466 ~~~~ss~~ 473 (789)
...+.|..
T Consensus 375 ~~~~ts~k 382 (561)
T COG5354 375 DTDTTSEK 382 (561)
T ss_pred EecCCCcc
Confidence 76665543
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.052 Score=56.52 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=26.6
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCC
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ 168 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg 168 (789)
..+.++++||||+.+|+.. .+.+...|++....+.
T Consensus 24 ~~~~s~AvS~dg~~~A~v~--~~~~~~~L~~~~~~~~ 58 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVS--EGDGGRSLYVGPAGGP 58 (253)
T ss_pred ccccceEECCCCCeEEEEE--EcCCCCEEEEEcCCCc
Confidence 3467899999999999988 3334568888876554
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.028 Score=61.71 Aligned_cols=218 Identities=13% Similarity=0.035 Sum_probs=120.6
Q ss_pred EeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec-ccccccccccccCccceeeeeecccc
Q 003878 120 LLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSWVCFCFSHSFGYFFHLTISLLN 198 (789)
Q Consensus 120 l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (789)
|+|..++..+ .+..++|||-+..|||=+-....--.++-++.+.+++.+. ..+-++
T Consensus 338 lld~Kslki~---gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV-------------------- 394 (698)
T KOG2314|consen 338 LLDKKSLKIS---GIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV-------------------- 394 (698)
T ss_pred eecccccCCc---cccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceee--------------------
Confidence 4444444332 3678899999999999876666556788899999987654 223333
Q ss_pred ccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEE
Q 003878 199 VPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFY 278 (789)
Q Consensus 199 ~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (789)
. .-.+-|-..|++|++-...-++.. ....-.+-+|+
T Consensus 395 -s------------------------------------DckLhWQk~gdyLcvkvdR~tK~~-------~~g~f~n~eIf 430 (698)
T KOG2314|consen 395 -S------------------------------------DCKLHWQKSGDYLCVKVDRHTKSK-------VKGQFSNLEIF 430 (698)
T ss_pred -e------------------------------------ccEEEeccCCcEEEEEEEeecccc-------ccceEeeEEEE
Confidence 1 245789999999998655432210 00011223344
Q ss_pred EEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc
Q 003878 279 YHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG 358 (789)
Q Consensus 279 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~ 358 (789)
+ +...+. .+.+.+..+ .+..++|-|.|...++.+.+....+-..|-+....+ + .. +....+.
T Consensus 431 r--ireKdI-pve~velke---~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~--~---------~~-lVk~~dk 492 (698)
T KOG2314|consen 431 R--IREKDI-PVEVVELKE---SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK--K---------PS-LVKELDK 492 (698)
T ss_pred E--eeccCC-Cceeeecch---heeeeeeccCCCeEEEEEccccccceeEEEeecCCC--c---------hh-hhhhhcc
Confidence 4 332221 122222222 245789999999988776554433334444443221 1 11 1111111
Q ss_pred ccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEE
Q 003878 359 FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 425 (789)
Q Consensus 359 ~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~ 425 (789)
-......|+|.|+.+++.+- .+.++.|.-+|++-.+ .+ .+...++.....+.|.+.++.++..+
T Consensus 493 ~~~N~vfwsPkG~fvvva~l-~s~~g~l~F~D~~~a~-~k-~~~~~eh~~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAAL-VSRRGDLEFYDTDYAD-LK-DTASPEHFAATEVEWDPTGRYVVTSS 556 (698)
T ss_pred cccceEEEcCCCcEEEEEEe-cccccceEEEecchhh-hh-hccCccccccccceECCCCCEEEEee
Confidence 11233469999987765543 3467889999876422 11 22222234456778888555555444
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.015 Score=65.85 Aligned_cols=153 Identities=13% Similarity=0.058 Sum_probs=89.0
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
.-.+..||||+.|+++--+ +++.++-+++- .--+.+|... --+.++.+|||++.++-
T Consensus 511 vL~v~~Spdgk~LaVsLLd-------------------nTVkVyflDtl-KFflsLYGHk---LPV~smDIS~DSklivT 567 (888)
T KOG0306|consen 511 VLCVSVSPDGKLLAVSLLD-------------------NTVKVYFLDTL-KFFLSLYGHK---LPVLSMDISPDSKLIVT 567 (888)
T ss_pred EEEEEEcCCCcEEEEEecc-------------------CeEEEEEecce-eeeeeecccc---cceeEEeccCCcCeEEe
Confidence 4678999999999987443 34444455442 1112233322 22457899999999886
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-eeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
.+.+. +-.+|=+|-.+ +-+.+...-+. ....|-| ..+++|.+.+ ...+-.||-+..+
T Consensus 568 gSADK---nVKiWGLdFGD---------------CHKS~fAHdDSvm~V~F~P-~~~~FFt~gK---D~kvKqWDg~kFe 625 (888)
T KOG0306|consen 568 GSADK---NVKIWGLDFGD---------------CHKSFFAHDDSVMSVQFLP-KTHLFFTCGK---DGKVKQWDGEKFE 625 (888)
T ss_pred ccCCC---ceEEeccccch---------------hhhhhhcccCceeEEEEcc-cceeEEEecC---cceEEeechhhhh
Confidence 65443 44565544432 11222332222 1233677 4677777655 4678889877655
Q ss_pred CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~ 438 (789)
.++.+-.|. .-+...+.++++.++++.+.|- .|+.|...
T Consensus 626 ~iq~L~~H~--~ev~cLav~~~G~~vvs~shD~--sIRlwE~t 664 (888)
T KOG0306|consen 626 EIQKLDGHH--SEVWCLAVSPNGSFVVSSSHDK--SIRLWERT 664 (888)
T ss_pred hheeeccch--heeeeeEEcCCCCeEEeccCCc--eeEeeecc
Confidence 445554433 3355566777677888888775 46666543
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.072 Score=57.43 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=53.1
Q ss_pred CCCCceEEEEECCCCCC------eEEeccCC-C---CceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCc-eeeecc-
Q 003878 380 DAPKYKIIRVDLKEPND------WFEVIPEA-E---RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGS-LLHQLP- 447 (789)
Q Consensus 380 ~~~~~~L~~~dl~~~~~------~~~l~~~~-~---~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~-~~~~l~- 447 (789)
++.++.|++|++...+. ...+.|.. + ...+.+++..++.-|+++.+.+|. |++|-..+|- .+..|.
T Consensus 344 GSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~--vrLW~i~~g~r~i~~l~~ 421 (479)
T KOG0299|consen 344 GSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC--VRLWKIEDGLRAINLLYS 421 (479)
T ss_pred ccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc--eEEEEecCCccccceeee
Confidence 34578888888765431 11122221 0 125678888886678998988885 4455555452 112221
Q ss_pred cC-CeeEEEeecccCCcEEEEEEc
Q 003878 448 IE-IGSVNAISARREDSVVFISFT 470 (789)
Q Consensus 448 ~~-~~~v~~~s~s~d~~~l~~~~s 470 (789)
++ .|-|.++.++.+++.++....
T Consensus 422 ls~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 422 LSLVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred cccccEEEEEEEccCCCEEEEecc
Confidence 23 567788888899997776543
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.11 Score=55.30 Aligned_cols=61 Identities=26% Similarity=0.254 Sum_probs=38.9
Q ss_pred cCCCCeeEEEEecCCC-CC--ceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcC
Q 003878 99 TGLQPQSVLYVQDSLD-AK--AKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIE 166 (789)
Q Consensus 99 ~~~~~~~~~~~~~~~~-~~--~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~ 166 (789)
-|++.+-.||...... ++ ..|.+ ...|+ .++.++..+.+||+|..|| +|++..++.+|-..
T Consensus 32 ~G~D~~iriW~v~r~~~~~~~~~V~y-~s~Ls-~H~~aVN~vRf~p~gelLA-----Sg~D~g~v~lWk~~ 95 (434)
T KOG1009|consen 32 AGGDKDIRIWKVNRSEPGGGDMKVEY-LSSLS-RHTRAVNVVRFSPDGELLA-----SGGDGGEVFLWKQG 95 (434)
T ss_pred ccCccceeeeeeeecCCCCCceeEEE-eeccc-CCcceeEEEEEcCCcCeee-----ecCCCceEEEEEec
Confidence 3455556677754322 21 23332 22343 2456789999999999999 67777888888765
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.059 Score=55.41 Aligned_cols=51 Identities=18% Similarity=0.070 Sum_probs=37.1
Q ss_pred ceEEeccCCCCCC-----CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec
Q 003878 117 AKVLLDPNTLSDD-----GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA 172 (789)
Q Consensus 117 ~~~l~d~~~~~~~-----~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~ 172 (789)
..|+.|..++... +...+.+++||+||++|.-+. ....|.+||+..|..+.
T Consensus 46 ~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS-----~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 46 RVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSS-----RDWSIKLWDLLKGSPLK 101 (405)
T ss_pred cEEEEEccccchhhhhhccccceeEEEecCCCCEeeeec-----CCceeEEEeccCCCcee
Confidence 3566777666433 345688999999999998433 34579999999997543
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.045 Score=59.32 Aligned_cols=192 Identities=14% Similarity=0.009 Sum_probs=116.9
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
++..+....++|+++.++. .|+|...+++||+.++.+ +..+... .|
T Consensus 109 h~apv~~~~f~~~d~t~l~----s~sDd~v~k~~d~s~a~v-~~~l~~h---------------------tD-------- 154 (487)
T KOG0310|consen 109 HQAPVHVTKFSPQDNTMLV----SGSDDKVVKYWDLSTAYV-QAELSGH---------------------TD-------- 154 (487)
T ss_pred ccCceeEEEecccCCeEEE----ecCCCceEEEEEcCCcEE-EEEecCC---------------------cc--------
Confidence 5566788889999988874 466778999999999875 3233332 01
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
-....+|+|-...|+++ ..+...|.+|+..+... .
T Consensus 155 --------------------------YVR~g~~~~~~~hivvt------------------GsYDg~vrl~DtR~~~~-~ 189 (487)
T KOG0310|consen 155 --------------------------YVRCGDISPANDHIVVT------------------GSYDGKVRLWDTRSLTS-R 189 (487)
T ss_pred --------------------------eeEeeccccCCCeEEEe------------------cCCCceEEEEEeccCCc-e
Confidence 13677899998999987 55677899999887642 2
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee--EEEe
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY--EVIA 367 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~s 367 (789)
+ .+. ++..-+.++-+-|.|..++-.. -+.+.+||+.+|... +... ....... -.+.
T Consensus 190 v--~el-nhg~pVe~vl~lpsgs~iasAg------Gn~vkVWDl~~G~ql------------l~~~-~~H~KtVTcL~l~ 247 (487)
T KOG0310|consen 190 V--VEL-NHGCPVESVLALPSGSLIASAG------GNSVKVWDLTTGGQL------------LTSM-FNHNKTVTCLRLA 247 (487)
T ss_pred e--EEe-cCCCceeeEEEcCCCCEEEEcC------CCeEEEEEecCCcee------------hhhh-hcccceEEEEEee
Confidence 2 222 2222345677788888876443 256889999875311 1000 1011111 1133
Q ss_pred cCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCe
Q 003878 368 NDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVK 429 (789)
Q Consensus 368 ~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~ 429 (789)
.++.+|+- .+=+.++-.+|+.+ ++.+..-.-...+-++++++++..++.+..||.
T Consensus 248 s~~~rLlS----~sLD~~VKVfd~t~---~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 248 SDSTRLLS----GSLDRHVKVFDTTN---YKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred cCCceEee----cccccceEEEEccc---eEEEEeeecccceeeEEecCCCceEEEecccce
Confidence 46666662 12234555556433 444433333355778888887787778888874
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.024 Score=60.41 Aligned_cols=68 Identities=15% Similarity=0.113 Sum_probs=44.0
Q ss_pred EEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEEC
Q 003878 365 VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl 437 (789)
.+|.||+.+++-|+. +.|..++..+-+ ...++++.....+.++.++|+.+.....+.+....|..+..
T Consensus 288 ~VS~dGkf~AlGT~d----GsVai~~~~~lq-~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 288 AVSDDGKFLALGTMD----GSVAIYDAKSLQ-RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEcCCCcEEEEeccC----CcEEEEEeceee-eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 478999999887774 456667766554 34456666556788999998655555555444444444444
|
|
| >COG3150 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0099 Score=55.74 Aligned_cols=139 Identities=12% Similarity=-0.012 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEec---CCcccccccccccCCccch--hhcCC
Q 003878 599 FDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH---VGVMDMLRYHKFTIGHAWV--SDFGC 673 (789)
Q Consensus 599 ~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~---~p~~d~~~~~~~~~~~~~~--~e~g~ 673 (789)
..+.++-++.++++. .|+ .++|.|.|.||+.+-+++.++ -+++++.. .|.-+|..+.. ..+.|+ .+|-.
T Consensus 42 p~~a~~ele~~i~~~-~~~-~p~ivGssLGGY~At~l~~~~--Girav~~NPav~P~e~l~gylg--~~en~ytg~~y~l 115 (191)
T COG3150 42 PQQALKELEKAVQEL-GDE-SPLIVGSSLGGYYATWLGFLC--GIRAVVFNPAVRPYELLTGYLG--RPENPYTGQEYVL 115 (191)
T ss_pred HHHHHHHHHHHHHHc-CCC-CceEEeecchHHHHHHHHHHh--CChhhhcCCCcCchhhhhhhcC--CCCCCCCcceEEe
Confidence 456666777777663 233 399999999999999999885 35555432 23223322221 001010 11100
Q ss_pred CCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCC-CCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEE
Q 003878 674 SEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADH-DDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGR 752 (789)
Q Consensus 674 p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~-D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~ 752 (789)
.+.....+.. .+++.. ..|..|++-... |....+.++..++... ...
T Consensus 116 --e~~hI~~l~~----~~~~~l---------~~p~~~~lL~qtgDEvLDyr~a~a~y~~~-----------------~~~ 163 (191)
T COG3150 116 --ESRHIATLCV----LQFREL---------NRPRCLVLLSQTGDEVLDYRQAVAYYHPC-----------------YEI 163 (191)
T ss_pred --ehhhHHHHHH----hhcccc---------CCCcEEEeecccccHHHHHHHHHHHhhhh-----------------hhe
Confidence 1112222222 223332 356677766666 8776655554443332 356
Q ss_pred EeCCCCcCCCCchhhHHHHHHHHHHHH
Q 003878 753 IERKAGHGVGLPTQKMIDEAADRYGFM 779 (789)
Q Consensus 753 ~~~~~gH~~~~~~~~~~~~~~~~~~fl 779 (789)
+..++.|+|.. ....+..+.+|+
T Consensus 164 V~dgg~H~F~~----f~~~l~~i~aF~ 186 (191)
T COG3150 164 VWDGGDHKFKG----FSRHLQRIKAFK 186 (191)
T ss_pred eecCCCccccc----hHHhHHHHHHHh
Confidence 66789999864 234566777776
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.021 Score=61.83 Aligned_cols=179 Identities=10% Similarity=0.019 Sum_probs=106.5
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.+-..+|||++|++. ++...+-+|+|.++...- -.+.+-....-..++.|||.+-.+..
T Consensus 469 RSckL~pdgrtLivG-------------------GeastlsiWDLAapTpri--kaeltssapaCyALa~spDakvcFsc 527 (705)
T KOG0639|consen 469 RSCKLLPDGRTLIVG-------------------GEASTLSIWDLAAPTPRI--KAELTSSAPACYALAISPDAKVCFSC 527 (705)
T ss_pred eeeEecCCCceEEec-------------------cccceeeeeeccCCCcch--hhhcCCcchhhhhhhcCCccceeeee
Confidence 567789999999875 234568889997654221 01111100112357899999987766
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND 396 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~ 396 (789)
..++ .|.++|+.+. ..++.+....+. .--.+++||..|+ .++.+..|.-||+..+.
T Consensus 528 csdG-----nI~vwDLhnq-------------~~VrqfqGhtDGascIdis~dGtklW----TGGlDntvRcWDlregr- 584 (705)
T KOG0639|consen 528 CSDG-----NIAVWDLHNQ-------------TLVRQFQGHTDGASCIDISKDGTKLW----TGGLDNTVRCWDLREGR- 584 (705)
T ss_pred ccCC-----cEEEEEcccc-------------eeeecccCCCCCceeEEecCCCceee----cCCCccceeehhhhhhh-
Confidence 6543 3788898762 112222222221 2234788998877 35566778889987753
Q ss_pred eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEE
Q 003878 397 WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVV 465 (789)
Q Consensus 397 ~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l 465 (789)
.+..+.....|.++...+.+..++...+++ ++.+.... +....+|.+....|-++.+.+-|+.+
T Consensus 585 --qlqqhdF~SQIfSLg~cP~~dWlavGMens--~vevlh~s-kp~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 585 --QLQQHDFSSQIFSLGYCPTGDWLAVGMENS--NVEVLHTS-KPEKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred --hhhhhhhhhhheecccCCCccceeeecccC--cEEEEecC-CccceeecccccEEEEEEecccCcee
Confidence 333444334455555555444444566665 56666654 55557788777777777788777743
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.11 Score=58.93 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=53.2
Q ss_pred ceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC---CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEEC
Q 003878 407 DVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE---IGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 407 ~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~---~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl 483 (789)
..+.++++.+..+++++.-.|- .|.++++++|+.++..... .|..--+..+|.+..++-+++. .++-.+|.
T Consensus 597 tTlYDm~Vdp~~k~v~t~cQDr--nirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd----ktl~~~Df 670 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVCQDR--NIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSD----KTLCFVDF 670 (1080)
T ss_pred ceEEEeeeCCCcceEEEEeccc--ceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecC----CceEEEEe
Confidence 4577888877545555555553 6899999999986665542 4665567788888877776654 36777888
Q ss_pred CCCCc
Q 003878 484 KTETP 488 (789)
Q Consensus 484 ~tg~~ 488 (789)
-+|++
T Consensus 671 ~sgEc 675 (1080)
T KOG1408|consen 671 VSGEC 675 (1080)
T ss_pred ccchh
Confidence 77764
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.42 Score=46.90 Aligned_cols=133 Identities=12% Similarity=0.136 Sum_probs=71.0
Q ss_pred cCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEE
Q 003878 309 EDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIR 388 (789)
Q Consensus 309 pDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~ 388 (789)
..|..|+++... ..-.||+-|-..| +++..+..........++=+|-.|+ + +..+..|..
T Consensus 149 ~s~~~il~s~ga---gdc~iy~tdc~~g-------------~~~~a~sghtghilalyswn~~m~~--s--gsqdktirf 208 (350)
T KOG0641|consen 149 ESGGAILASAGA---GDCKIYITDCGRG-------------QGFHALSGHTGHILALYSWNGAMFA--S--GSQDKTIRF 208 (350)
T ss_pred CcCceEEEecCC---CcceEEEeecCCC-------------CcceeecCCcccEEEEEEecCcEEE--c--cCCCceEEE
Confidence 345555555432 2577999887764 3344444333222222222333332 1 223345666
Q ss_pred EECCCCCCeEEeccC--C---CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCc
Q 003878 389 VDLKEPNDWFEVIPE--A---ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDS 463 (789)
Q Consensus 389 ~dl~~~~~~~~l~~~--~---~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~ 463 (789)
||+.-+.....+-.. . +...+.++.+.+.++|+++...+. .-.++|+..|..++........+..+.++|..-
T Consensus 209 wdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds--sc~lydirg~r~iq~f~phsadir~vrfsp~a~ 286 (350)
T KOG0641|consen 209 WDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS--SCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAH 286 (350)
T ss_pred EeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCC--ceEEEEeeCCceeeeeCCCccceeEEEeCCCce
Confidence 676543311221111 1 113456777777789998888776 445568876666555554466777777777554
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.016 Score=62.51 Aligned_cols=246 Identities=11% Similarity=0.023 Sum_probs=132.8
Q ss_pred CCcEEEEeEEeCC-CCcEEEEEEecCCceEEEEEEEEcCC-CceecccccccccccccCccceeeeeecccccccccccc
Q 003878 129 DGTAALIKVSVSE-DAKYLAYALSYSGSDWATIKLMRIED-QIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFL 206 (789)
Q Consensus 129 ~~~~~~~~~~~Sp-Dg~~la~~~~~~g~~~~~i~v~dl~t-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 206 (789)
+++-.+..+.|.| .|..|+ +++-...|+||++-+ +..+. +..+. +.
T Consensus 212 gH~kgvsai~~fp~~~hLlL-----S~gmD~~vklW~vy~~~~~lr-tf~gH------~k-------------------- 259 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLL-----SGGMDGLVKLWNVYDDRRCLR-TFKGH------RK-------------------- 259 (503)
T ss_pred CCccccchhhhccceeeEEE-----ecCCCceEEEEEEecCcceeh-hhhcc------hh--------------------
Confidence 3455678888999 666555 444566899999877 44432 22111 00
Q ss_pred ccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCC
Q 003878 207 YLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ 286 (789)
Q Consensus 207 ~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~ 286 (789)
.+..+.|+++|+.|+-..++ ..|.+|+..|++
T Consensus 260 -----------------------------~Vrd~~~s~~g~~fLS~sfD-------------------~~lKlwDtETG~ 291 (503)
T KOG0282|consen 260 -----------------------------PVRDASFNNCGTSFLSASFD-------------------RFLKLWDTETGQ 291 (503)
T ss_pred -----------------------------hhhhhhccccCCeeeeeecc-------------------eeeeeeccccce
Confidence 25789999999999866554 357788888775
Q ss_pred CCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce-eEE
Q 003878 287 SEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEV 365 (789)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 365 (789)
.. .-+.... . ..-+.+-||+..+++.... ...|..+|+.+++- +.......... -..
T Consensus 292 ~~--~~f~~~~-~--~~cvkf~pd~~n~fl~G~s----d~ki~~wDiRs~kv-------------vqeYd~hLg~i~~i~ 349 (503)
T KOG0282|consen 292 VL--SRFHLDK-V--PTCVKFHPDNQNIFLVGGS----DKKIRQWDIRSGKV-------------VQEYDRHLGAILDIT 349 (503)
T ss_pred EE--EEEecCC-C--ceeeecCCCCCcEEEEecC----CCcEEEEeccchHH-------------HHHHHhhhhheeeeE
Confidence 32 2233322 2 2346788999777766432 46788999987530 11100011111 122
Q ss_pred EecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCC---ce
Q 003878 366 IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNG---SL 442 (789)
Q Consensus 366 ~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG---~~ 442 (789)
|-++|++++-.++. ...+|+-+.. +-..+.+. .........+...+++..++..+-+. .|+++....- ..
T Consensus 350 F~~~g~rFissSDd--ks~riWe~~~--~v~ik~i~-~~~~hsmP~~~~~P~~~~~~aQs~dN--~i~ifs~~~~~r~nk 422 (503)
T KOG0282|consen 350 FVDEGRRFISSSDD--KSVRIWENRI--PVPIKNIA-DPEMHTMPCLTLHPNGKWFAAQSMDN--YIAIFSTVPPFRLNK 422 (503)
T ss_pred EccCCceEeeeccC--ccEEEEEcCC--Cccchhhc-chhhccCcceecCCCCCeehhhccCc--eEEEEecccccccCH
Confidence 55778887655443 2445544433 32112222 11123445566665433333333332 4555443210 01
Q ss_pred eeecccC--CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 443 LHQLPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 443 ~~~l~~~--~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.+..... .|....+.+|||+..|. |-..-+.++.||..|-+
T Consensus 423 kK~feGh~vaGys~~v~fSpDG~~l~----SGdsdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 423 KKRFEGHSVAGYSCQVDFSPDGRTLC----SGDSDGKVNFWDWKTTK 465 (503)
T ss_pred hhhhcceeccCceeeEEEcCCCCeEE----eecCCccEEEeechhhh
Confidence 1122222 33333678999999665 33556889999987654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.39 Score=47.72 Aligned_cols=239 Identities=14% Similarity=0.083 Sum_probs=132.3
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
-++..+.+.-||+|..- -|+ ..++++|+...|..+. +..+. |
T Consensus 18 gaV~avryN~dGnY~lt----cGs-drtvrLWNp~rg~lik-tYsgh-----------------------G--------- 59 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLT----CGS-DRTVRLWNPLRGALIK-TYSGH-----------------------G--------- 59 (307)
T ss_pred cceEEEEEccCCCEEEE----cCC-CceEEeecccccceee-eecCC-----------------------C---------
Confidence 45778899999999862 455 4599999999886553 22221 0
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
...-..+-+-|+..|+- .+....+++|++.|+....
T Consensus 60 -----------------------~EVlD~~~s~Dnskf~s-------------------~GgDk~v~vwDV~TGkv~R-- 95 (307)
T KOG0316|consen 60 -----------------------HEVLDAALSSDNSKFAS-------------------CGGDKAVQVWDVNTGKVDR-- 95 (307)
T ss_pred -----------------------ceeeecccccccccccc-------------------CCCCceEEEEEcccCeeee--
Confidence 02344555667777763 2345578999998875322
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCC
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDT 371 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~ 371 (789)
-|.. +...+..+.+..+..-++-.+ ..+.+.++|-.... ..|.+ +..+.......+.-.+.
T Consensus 96 r~rg--H~aqVNtV~fNeesSVv~Sgs-----fD~s~r~wDCRS~s-----------~ePiQ-ildea~D~V~Si~v~~h 156 (307)
T KOG0316|consen 96 RFRG--HLAQVNTVRFNEESSVVASGS-----FDSSVRLWDCRSRS-----------FEPIQ-ILDEAKDGVSSIDVAEH 156 (307)
T ss_pred eccc--ccceeeEEEecCcceEEEecc-----ccceeEEEEcccCC-----------CCccc-hhhhhcCceeEEEeccc
Confidence 2332 233455677766655444322 24557788876531 12232 22222212222222333
Q ss_pred EEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC--
Q 003878 372 VFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-- 449 (789)
Q Consensus 372 ~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-- 449 (789)
.|+ .. ..++.+-++|+..+. +...--...+..+.+++++...+...-++ .|+++|.++|+.+..-...
T Consensus 157 eIv-aG---S~DGtvRtydiR~G~----l~sDy~g~pit~vs~s~d~nc~La~~l~s--tlrLlDk~tGklL~sYkGhkn 226 (307)
T KOG0316|consen 157 EIV-AG---SVDGTVRTYDIRKGT----LSSDYFGHPITSVSFSKDGNCSLASSLDS--TLRLLDKETGKLLKSYKGHKN 226 (307)
T ss_pred EEE-ee---ccCCcEEEEEeecce----eehhhcCCcceeEEecCCCCEEEEeeccc--eeeecccchhHHHHHhccccc
Confidence 333 22 234667777776654 22222245678889998766655555554 7889999999864433322
Q ss_pred -CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 450 -IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 450 -~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
.+.+. -.++ .+....+ |-.+-+.+|.||+...
T Consensus 227 ~eykld-c~l~-qsdthV~---sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 227 MEYKLD-CCLN-QSDTHVF---SGSEDGKVYFWDLVDE 259 (307)
T ss_pred ceeeee-eeec-ccceeEE---eccCCceEEEEEeccc
Confidence 11111 1111 2233333 3356778999998766
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.052 Score=57.62 Aligned_cols=129 Identities=19% Similarity=0.249 Sum_probs=70.2
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-----cccc---eeEEEecCCCEE
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-----GFDA---QYEVIANDDTVF 373 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-----~~~~---~~~~~s~dG~~l 373 (789)
+....++.++.+++|.+.+ ..||-+++.+..... ..+|..+.. ++.. ....+.+..++|
T Consensus 186 f~~~~~~~~~~~~~F~Sy~-----G~v~~~dlsg~~~~~--------~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 186 FEHPAYSRDGGRLYFVSYE-----GNVYSADLSGDSAKF--------GKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp -S--EEETTTTEEEEEBTT-----SEEEEEEETTSSEEE--------EEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred ccccceECCCCeEEEEecC-----CEEEEEeccCCcccc--------cCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 3356677777777776643 458999987632110 011211111 1110 112355667788
Q ss_pred EEEECCC------CCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCE-EEEEEEeCCeEEEEEEECCCCceeeec
Q 003878 374 TFLTNKD------APKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGSLLHQL 446 (789)
Q Consensus 374 ~~~tn~~------~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl~tG~~~~~l 446 (789)
|++.+.+ .+...|+.+|+++++...++ +-. ..+.++.++.++. +++.... +...|+++|..+|+.++.+
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri-~l~--~~~~Si~Vsqd~~P~L~~~~~-~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARI-PLE--HPIDSIAVSQDDKPLLYALSA-GDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEE-EEE--EEESEEEEESSSS-EEEEEET-TTTEEEEEETTT--EEEEE
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEE-eCC--CccceEEEccCCCcEEEEEcC-CCCeEEEEeCcCCcEEeeh
Confidence 8887642 24568999999998733333 211 3456788887544 4443333 2347999999999886666
Q ss_pred c
Q 003878 447 P 447 (789)
Q Consensus 447 ~ 447 (789)
.
T Consensus 329 ~ 329 (342)
T PF06433_consen 329 E 329 (342)
T ss_dssp -
T ss_pred h
Confidence 4
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0065 Score=68.18 Aligned_cols=110 Identities=14% Similarity=0.157 Sum_probs=72.9
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+.+.+..+.+||+|+.||-+....-.+...|++|+.++=.... .|...
T Consensus 524 HGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~-~L~~H------------------------------- 571 (764)
T KOG1063|consen 524 HGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ-ELEGH------------------------------- 571 (764)
T ss_pred CceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh-eeccc-------------------------------
Confidence 4578999999999999998887777889999999976643332 22222
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
++....++|||||+.|+-...+ +.+-+|....... +
T Consensus 572 ------------------------sLTVT~l~FSpdg~~LLsvsRD-------------------Rt~sl~~~~~~~~-~ 607 (764)
T KOG1063|consen 572 ------------------------SLTVTRLAFSPDGRYLLSVSRD-------------------RTVSLYEVQEDIK-D 607 (764)
T ss_pred ------------------------ceEEEEEEECCCCcEEEEeecC-------------------ceEEeeeeecccc-h
Confidence 2246899999999999866443 3344444432211 1
Q ss_pred EEEEe-cCCCCeeEEEEEEecCCcEEE
Q 003878 290 ILCWK-DPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 290 ~~~~~-~~~~~~~~~~~~~SpDG~~l~ 315 (789)
..-|. ...|..-+.+..|+||+++++
T Consensus 608 e~~fa~~k~HtRIIWdcsW~pde~~Fa 634 (764)
T KOG1063|consen 608 EFRFACLKAHTRIIWDCSWSPDEKYFA 634 (764)
T ss_pred hhhhccccccceEEEEcccCcccceeE
Confidence 11111 233445566889999999944
|
|
| >KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.01 Score=66.00 Aligned_cols=170 Identities=17% Similarity=0.129 Sum_probs=101.3
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeE--EEEEeecC-CCCCChhHHhcccccCCcchHHHHHHHHHHHH--H
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAV--FCIANIRG-GGEYGEEWHKGGALAKKQNCFDDFISASEYLI--S 611 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~--v~~~~~RG-~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~--~ 611 (789)
-.|+++..||.+-....-.|.-.|.+.|.-.|-+ +..+|++- .|+ .+-....+-.+.+.++.+ -
T Consensus 175 ~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~igG-----------~nI~h~ae~~vSf~r~kvlei 243 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIGG-----------ANIKHAAEYSVSFDRYKVLEI 243 (784)
T ss_pred CCceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCCC-----------cchHHHHHHHHHHhhhhhhhh
Confidence 4689999999883333333444455666545533 33444442 111 011112233344444322 2
Q ss_pred cCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccC
Q 003878 612 AGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHN 691 (789)
Q Consensus 612 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~ 691 (789)
.+..-...|.++|+|+|..+++++....-|.+-.++...++-+- . ..+. -|..++. |.
T Consensus 244 ~gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~--~---vdgp-----rgirDE~-----Ll------- 301 (784)
T KOG3253|consen 244 TGEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLD--T---VDGP-----RGIRDEA-----LL------- 301 (784)
T ss_pred hccCCCCceEEEecccCceeeEEeccccCCceEEEEEEeccccc--C---CCcc-----cCCcchh-----hH-------
Confidence 24445578999999999999888887776666544444332210 0 0010 0222211 11
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCc
Q 003878 692 VRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP 764 (789)
Q Consensus 692 v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~ 764 (789)
.. ..|+||+.|.+|.+|++..-+++.+++++. +++++..+++|.+.-+
T Consensus 302 --dm----------k~PVLFV~Gsnd~mcspn~ME~vreKMqA~-------------~elhVI~~adhsmaip 349 (784)
T KOG3253|consen 302 --DM----------KQPVLFVIGSNDHMCSPNSMEEVREKMQAE-------------VELHVIGGADHSMAIP 349 (784)
T ss_pred --hc----------CCceEEEecCCcccCCHHHHHHHHHHhhcc-------------ceEEEecCCCccccCC
Confidence 11 569999999999999999999999999864 5789999999987543
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.26 Score=56.35 Aligned_cols=126 Identities=14% Similarity=0.116 Sum_probs=82.0
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCC
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDA 381 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~ 381 (789)
+..++.|||++++++.....++.+-.+.+.|++++. . ....+.+. .....|.+|++.|++++..+.
T Consensus 131 Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~-----------~--~~d~i~~~-~~~~~Wa~d~~~lfYt~~d~~ 196 (682)
T COG1770 131 LGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGE-----------E--LPDEITNT-SGSFAWAADGKTLFYTRLDEN 196 (682)
T ss_pred eeeeeeCCCCceEEEEEecccccEEEEEEEeccccc-----------c--cchhhccc-ccceEEecCCCeEEEEEEcCC
Confidence 456789999999999887766667778888998863 0 11111111 123459999999999887653
Q ss_pred -CCceEEEEECCCCCCe-EEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCc
Q 003878 382 -PKYKIIRVDLKEPNDW-FEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGS 441 (789)
Q Consensus 382 -~~~~L~~~dl~~~~~~-~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~ 441 (789)
--.+|++..+.++..- +.|..+.+....-++.-+.+ +.+++.......+++++++.+..+
T Consensus 197 ~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~ 259 (682)
T COG1770 197 HRPDKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPE 259 (682)
T ss_pred CCcceEEEEecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCC
Confidence 3468888888874322 33445554444444444432 556666656667899999987543
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.046 Score=58.75 Aligned_cols=161 Identities=13% Similarity=0.048 Sum_probs=99.7
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
+..++|.|-...+|-+.. ....+.+|++.+...+...... .+..-+..++|+|=+.+|+.
T Consensus 230 VeDV~~h~~h~~lF~sv~------------------dd~~L~iwD~R~~~~~~~~~~~--ah~~~vn~~~fnp~~~~ilA 289 (422)
T KOG0264|consen 230 VEDVAWHPLHEDLFGSVG------------------DDGKLMIWDTRSNTSKPSHSVK--AHSAEVNCVAFNPFNEFILA 289 (422)
T ss_pred eehhhccccchhhheeec------------------CCCeEEEEEcCCCCCCCccccc--ccCCceeEEEeCCCCCceEE
Confidence 467899998877775533 3356889998863222222222 23334567899999999887
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeE-EEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
+.+. ...|.++|+.... .++-.+....+..+. .|||+.+.++-.+. .+.+|.++|+..-.
T Consensus 290 T~S~----D~tV~LwDlRnL~------------~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 290 TGSA----DKTVALWDLRNLN------------KPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRLNVWDLSRIG 350 (422)
T ss_pred eccC----CCcEEEeechhcc------------cCceeccCCCcceEEEEeCCCCCceeEecc---cCCcEEEEeccccc
Confidence 6642 4669999998742 223333333333343 39998887765543 45789999986421
Q ss_pred -----------CeEEeccCCCC-ceeeeEEEecC-CEEEEEEEeCCeEEEEEEECC
Q 003878 396 -----------DWFEVIPEAER-DVLESATAVNL-NQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 396 -----------~~~~l~~~~~~-~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~ 438 (789)
....++.|..+ ..+.+++|.+. -+++++..+++ .|.+|...
T Consensus 351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN--~LqIW~~s 404 (422)
T KOG0264|consen 351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN--ILQIWQMA 404 (422)
T ss_pred cccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCc--eEEEeecc
Confidence 12334444432 45778889884 47888888886 45555543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.15 Score=56.54 Aligned_cols=196 Identities=12% Similarity=0.093 Sum_probs=109.7
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc----EEEEecCCCCeeEEEEEEecCCc
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED----ILCWKDPEHPKYIFSGHVTEDGQ 312 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~----~~~~~~~~~~~~~~~~~~SpDG~ 312 (789)
+..++.||-+.--++..+.... .+-+..+.++......... ...|.. + -....|.+-|.
T Consensus 168 i~~f~lSpgp~~~~vAvyvPe~------------kGaPa~vri~~~~~~~~~~~~a~ksFFka-d----kvqm~WN~~gt 230 (566)
T KOG2315|consen 168 ITMLSLSPGPEPPFVAVYVPEK------------KGAPASVRIYKYPEEGQHQPVANKSFFKA-D----KVQMKWNKLGT 230 (566)
T ss_pred eeeEEecCCCCCceEEEEccCC------------CCCCcEEEEeccccccccchhhhcccccc-c----eeEEEeccCCc
Confidence 4778888875443333332211 3456667777765222111 111211 1 13567999998
Q ss_pred EEEEEEEcCCC-------CceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCce
Q 003878 313 YLVMCIEENCD-------PVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYK 385 (789)
Q Consensus 313 ~l~~~~~~~~~-------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~ 385 (789)
-|++.+...-+ ..+.+|+++..+ . ....++..........|+++|+.|.++..-- + .+
T Consensus 231 ~LLvLastdVDktn~SYYGEq~Lyll~t~g-~------------s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfM-P-Ak 295 (566)
T KOG2315|consen 231 ALLVLASTDVDKTNASYYGEQTLYLLATQG-E------------SVSVPLLKEGPVHDVTWSPSGREFAVVYGFM-P-AK 295 (566)
T ss_pred eEEEEEEEeecCCCccccccceEEEEEecC-c------------eEEEecCCCCCceEEEECCCCCEEEEEEecc-c-ce
Confidence 87765543321 246799998874 1 2234444322222244999999998876432 2 45
Q ss_pred EEEEECCCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcE
Q 003878 386 IIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSV 464 (789)
Q Consensus 386 L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~ 464 (789)
+-..|++.. ..--+++.+. ..+.+++. +.+++.+-.|-...+-+||..+-+.+..+..... +.+.|+|||..
T Consensus 296 vtifnlr~~--~v~df~egpR---N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~ 368 (566)
T KOG2315|consen 296 VTIFNLRGK--PVFDFPEGPR---NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEY 368 (566)
T ss_pred EEEEcCCCC--EeEeCCCCCc---cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcE
Confidence 666777653 2223444432 24455654 4566666666677999999975333222222222 24679999998
Q ss_pred EEEEEcC
Q 003878 465 VFISFTS 471 (789)
Q Consensus 465 l~~~~ss 471 (789)
++...++
T Consensus 369 flTATTa 375 (566)
T KOG2315|consen 369 FLTATTA 375 (566)
T ss_pred EEEEecc
Confidence 7766555
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.17 Score=57.95 Aligned_cols=211 Identities=12% Similarity=0.112 Sum_probs=101.7
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
....++|||+++|.+.++.. ....+...+.++ .....++.-.. .....+||++..+.
T Consensus 238 d~v~~spdGk~afvTsyNsE---------------~G~tl~em~a~e--~d~~vvfni~~------iea~vkdGK~~~V~ 294 (635)
T PRK02888 238 DNVDTDYDGKYAFSTCYNSE---------------EGVTLAEMMAAE--RDWVVVFNIAR------IEEAVKAGKFKTIG 294 (635)
T ss_pred ccceECCCCCEEEEeccCcc---------------cCcceeeecccc--CceEEEEchHH------HHHhhhCCCEEEEC
Confidence 56788999999999876431 111222222221 11222332211 12457899988762
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-ccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-DGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND 396 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~ 396 (789)
.+.|-++|..+...+ .......+ .+-...-..+||||+++|+ +|... ..+-++|+++.+.
T Consensus 295 -------gn~V~VID~~t~~~~---------~~~v~~yIPVGKsPHGV~vSPDGkylyV-anklS--~tVSVIDv~k~k~ 355 (635)
T PRK02888 295 -------GSKVPVVDGRKAANA---------GSALTRYVPVPKNPHGVNTSPDGKYFIA-NGKLS--PTVTVIDVRKLDD 355 (635)
T ss_pred -------CCEEEEEECCccccC---------CcceEEEEECCCCccceEECCCCCEEEE-eCCCC--CcEEEEEChhhhh
Confidence 256888998761000 01112211 1111112348999999885 44433 4567777765321
Q ss_pred -------eE-EeccCCC--CceeeeEEEecCCEEEEEEEeCCeEEEEEEECCC------Cc----eeeecccC--CeeEE
Q 003878 397 -------WF-EVIPEAE--RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN------GS----LLHQLPIE--IGSVN 454 (789)
Q Consensus 397 -------~~-~l~~~~~--~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~t------G~----~~~~l~~~--~~~v~ 454 (789)
.+ .++.+-+ ...+ ..++.+++..|.+..-+ ++|..|++++ |+ .+.++... .+.+.
T Consensus 356 ~~~~~~~~~~~vvaevevGlGPL-HTaFDg~G~aytslf~d--sqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~ 432 (635)
T PRK02888 356 LFDGKIKPRDAVVAEPELGLGPL-HTAFDGRGNAYTTLFLD--SQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNH 432 (635)
T ss_pred hhhccCCccceEEEeeccCCCcc-eEEECCCCCEEEeEeec--ceeEEEehHHHHHHhccccCCcceecccCCCccceee
Confidence 11 1111110 0111 23455544566555444 4899999874 22 22233322 33332
Q ss_pred E---eecccCCcEEEE---------EEcCCCCCcEEEEEECCCCCceEEEeee
Q 003878 455 A---ISARREDSVVFI---------SFTSFLIPGIVYQCNLKTETPEMKIFRE 495 (789)
Q Consensus 455 ~---~s~s~d~~~l~~---------~~ss~~~P~~ly~~dl~tg~~~~~~l~~ 495 (789)
. -+..+|++.++. .--++..|..-.++|.... +++++..
T Consensus 433 ~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgd--kM~lv~d 483 (635)
T PRK02888 433 ASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGD--KMKLVHD 483 (635)
T ss_pred ecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCC--eeEEEec
Confidence 1 123566765542 1124445666666666544 3555543
|
|
| >COG4947 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.00072 Score=63.09 Aligned_cols=125 Identities=15% Similarity=0.163 Sum_probs=80.1
Q ss_pred HHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHH
Q 003878 605 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLI 684 (789)
Q Consensus 605 ~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~ 684 (789)
--+|++++- =|.+..+.|.|+||+.++....++|++|..+|+.+++.|...+.. .--|.+.+
T Consensus 90 yerYv~eEa--lpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg------------~yyddDv~---- 151 (227)
T COG4947 90 YERYVIEEA--LPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFG------------GYYDDDVY---- 151 (227)
T ss_pred HHHHHHHhh--cCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhcc------------ccccCcee----
Confidence 344666653 356789999999999999999999999999999999999764432 10000010
Q ss_pred hcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCc
Q 003878 685 KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGH 759 (789)
Q Consensus 685 ~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH 759 (789)
-.||.+.+..+.+.-..+-...--+.+++|..|+..+ +..++.+.|.+. .+|..+.+..+-.|
T Consensus 152 ynsP~dylpg~~dp~~l~rlr~~~~vfc~G~e~~~L~--~~~~L~~~l~dK----------qipaw~~~WggvaH 214 (227)
T COG4947 152 YNSPSDYLPGLADPFRLERLRRIDMVFCIGDEDPFLD--NNQHLSRLLSDK----------QIPAWMHVWGGVAH 214 (227)
T ss_pred ecChhhhccCCcChHHHHHHhhccEEEEecCcccccc--chHHHHHHhccc----------cccHHHHHhccccc
Confidence 0234333332200000000012368899999998877 556888888876 77888877755444
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.66 Score=47.44 Aligned_cols=147 Identities=12% Similarity=0.079 Sum_probs=82.8
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC-CcEEEEec-CCCCeeEEEEEEec--CCcE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS-EDILCWKD-PEHPKYIFSGHVTE--DGQY 313 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~-~~~~~~~~-~~~~~~~~~~~~Sp--DG~~ 313 (789)
.-+.|-|+++.++-... +.|.++.+..... ...+...+ ......+.+..||| ||..
T Consensus 127 ~cvew~Pns~klasm~d--------------------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 127 NCVEWEPNSDKLASMDD--------------------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred eeEEEcCCCCeeEEecc--------------------CceEEEEcccCcchheeecccccccccceecccccCCCCccce
Confidence 56889999999986532 3477888875543 22222222 12233456889998 9999
Q ss_pred EEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc--ceeEEEecCCCEEEEEECCCCCCceEEEEEC
Q 003878 314 LVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD--AQYEVIANDDTVFTFLTNKDAPKYKIIRVDL 391 (789)
Q Consensus 314 l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl 391 (789)
++... .+.++.+|+.+-... ..+...-. .+...+.|+.+++++... ..+.|..+|.
T Consensus 187 v~tt~------d~tl~~~D~RT~~~~-------------~sI~dAHgq~vrdlDfNpnkq~~lvt~g---DdgyvriWD~ 244 (370)
T KOG1007|consen 187 VATTS------DSTLQFWDLRTMKKN-------------NSIEDAHGQRVRDLDFNPNKQHILVTCG---DDGYVRIWDT 244 (370)
T ss_pred EEEeC------CCcEEEEEccchhhh-------------cchhhhhcceeeeccCCCCceEEEEEcC---CCccEEEEec
Confidence 87654 244888898763210 01100000 011125677676665443 3466888887
Q ss_pred CCCC-CeEEeccCCCCceeeeEEEec-CCEEEEEEEeCC
Q 003878 392 KEPN-DWFEVIPEAERDVLESATAVN-LNQMIVSYLSDV 428 (789)
Q Consensus 392 ~~~~-~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g 428 (789)
...+ ..+++-++. ..+-.+.+.+ .+.|+++...|.
T Consensus 245 R~tk~pv~el~~Hs--HWvW~VRfn~~hdqLiLs~~SDs 281 (370)
T KOG1007|consen 245 RKTKFPVQELPGHS--HWVWAVRFNPEHDQLILSGGSDS 281 (370)
T ss_pred cCCCccccccCCCc--eEEEEEEecCccceEEEecCCCc
Confidence 7654 234444444 3445555554 267887777664
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.66 Score=45.58 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=64.8
Q ss_pred CCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-------Ce
Q 003878 379 KDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-------IG 451 (789)
Q Consensus 379 ~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-------~~ 451 (789)
.++++.+||..|-..++.+..+-.+. ...+.-.+|. +.++++.+.+. .|+.||+.-...++.+... ..
T Consensus 158 ~gagdc~iy~tdc~~g~~~~a~sght-ghilalyswn--~~m~~sgsqdk--tirfwdlrv~~~v~~l~~~~~~~gless 232 (350)
T KOG0641|consen 158 AGAGDCKIYITDCGRGQGFHALSGHT-GHILALYSWN--GAMFASGSQDK--TIRFWDLRVNSCVNTLDNDFHDGGLESS 232 (350)
T ss_pred cCCCcceEEEeecCCCCcceeecCCc-ccEEEEEEec--CcEEEccCCCc--eEEEEeeeccceeeeccCcccCCCcccc
Confidence 45678999999988876555565555 3555556675 58888888775 6888998755444555321 23
Q ss_pred eEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 452 SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 452 ~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
.|..+..+|.++.++ + --.-..-.+||...+
T Consensus 233 avaav~vdpsgrll~-s---g~~dssc~lydirg~ 263 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLA-S---GHADSSCMLYDIRGG 263 (350)
T ss_pred eeEEEEECCCcceee-e---ccCCCceEEEEeeCC
Confidence 466677888777443 2 223445677888777
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.15 Score=52.26 Aligned_cols=240 Identities=13% Similarity=0.120 Sum_probs=125.1
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCC-CceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED-QIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~t-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
+|+.+++||..+.++.+ |+=..++++|+++. |...+....... |
T Consensus 29 sIS~l~FSP~~~~~~~A----~SWD~tVR~wevq~~g~~~~ka~~~~~-------~------------------------ 73 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAA----GSWDGTVRIWEVQNSGQLVPKAQQSHD-------G------------------------ 73 (347)
T ss_pred chheeEeccccCceEEe----cccCCceEEEEEecCCcccchhhhccC-------C------------------------
Confidence 47889999955555544 33345899999986 454443322220 1
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
..-.++||.||..+|....+ .++.+|+|.+++...+
T Consensus 74 ------------------------PvL~v~WsddgskVf~g~~D-------------------k~~k~wDL~S~Q~~~v- 109 (347)
T KOG0647|consen 74 ------------------------PVLDVCWSDDGSKVFSGGCD-------------------KQAKLWDLASGQVSQV- 109 (347)
T ss_pred ------------------------CeEEEEEccCCceEEeeccC-------------------CceEEEEccCCCeeee-
Confidence 34678999999877755433 3578889988754332
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCC
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDT 371 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~ 371 (789)
.-.+.+ +..++|-+...+-.+.+. .. ...|..+|.... .+...+. -.+..|.. +- -.
T Consensus 110 --~~Hd~p--vkt~~wv~~~~~~cl~TG-SW--DKTlKfWD~R~~-------------~pv~t~~-LPeRvYa~-Dv-~~ 166 (347)
T KOG0647|consen 110 --AAHDAP--VKTCHWVPGMNYQCLVTG-SW--DKTLKFWDTRSS-------------NPVATLQ-LPERVYAA-DV-LY 166 (347)
T ss_pred --eecccc--eeEEEEecCCCcceeEec-cc--ccceeecccCCC-------------Ceeeeee-ccceeeeh-hc-cC
Confidence 222222 345677666654333321 12 345777887652 1111111 01112221 11 12
Q ss_pred EEEEEECCCCCCceEEEEECCCCC-CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecc---
Q 003878 372 VFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP--- 447 (789)
Q Consensus 372 ~l~~~tn~~~~~~~L~~~dl~~~~-~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~--- 447 (789)
-++++... +-.|.+++|+++. ..+..-.+. ...+..++.+.++..++..+-.|.-.|..+|. +......+
T Consensus 167 pm~vVata---~r~i~vynL~n~~te~k~~~SpL-k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~--~~~~~nFtFkC 240 (347)
T KOG0647|consen 167 PMAVVATA---ERHIAVYNLENPPTEFKRIESPL-KWQTRCVACFQDKDGFALGSIEGRVAIQYIDD--PNPKDNFTFKC 240 (347)
T ss_pred ceeEEEec---CCcEEEEEcCCCcchhhhhcCcc-cceeeEEEEEecCCceEeeeecceEEEEecCC--CCccCceeEEE
Confidence 23333322 2468888997653 233332222 34567888887655667777777555554443 32111111
Q ss_pred -------cC-CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 448 -------IE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 448 -------~~-~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
.+ .+.|.++++.|-...+. +.. .-++.--||-.
T Consensus 241 HR~~~~~~~~VYaVNsi~FhP~hgtlv-TaG---sDGtf~FWDkd 281 (347)
T KOG0647|consen 241 HRSTNSVNDDVYAVNSIAFHPVHGTLV-TAG---SDGTFSFWDKD 281 (347)
T ss_pred eccCCCCCCceEEecceEeecccceEE-Eec---CCceEEEecch
Confidence 11 44566666766555443 222 23455555543
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.078 Score=61.09 Aligned_cols=202 Identities=15% Similarity=0.096 Sum_probs=108.6
Q ss_pred eEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec---------ccccccccccccCccc
Q 003878 118 KVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA---------DALSWVCFCFSHSFGY 188 (789)
Q Consensus 118 ~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~---------~~~~~~~~~~~~~~~~ 188 (789)
+-+||++.+.+++ ..+.++.+|+-|+....+.+ ..+|-++++++|.... ..+.++
T Consensus 436 ~~~L~~~~~~~~~-~~~~av~vs~CGNF~~IG~S-----~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gl---------- 499 (910)
T KOG1539|consen 436 RHVLDPKRFKKDD-INATAVCVSFCGNFVFIGYS-----KGTIDRFNMQSGIHRKSFGDSPAHKGEVTGL---------- 499 (910)
T ss_pred cEEecCccccccC-cceEEEEEeccCceEEEecc-----CCeEEEEEcccCeeecccccCccccCceeEE----------
Confidence 3457777776644 23567899999998876554 3478999999993321 011111
Q ss_pred eeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCcc
Q 003878 189 FFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 268 (789)
Q Consensus 189 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~ 268 (789)
..=+--+++.+++.+|+-..|...-..--.++....--..+.|.+...- .
T Consensus 500 --------------------a~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l----------~ 549 (910)
T KOG1539|consen 500 --------------------AVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDL----------L 549 (910)
T ss_pred --------------------EecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhh----------h
Confidence 0001124567778888888886422000011111111234445443210 0
Q ss_pred ccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCC
Q 003878 269 TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 348 (789)
Q Consensus 269 ~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~ 348 (789)
.-......|.+.+..|...- ..|. .+...+.+..+|||||||+..+.+ +.|.++|+.++.
T Consensus 550 a~~~ddf~I~vvD~~t~kvv--R~f~--gh~nritd~~FS~DgrWlisasmD-----~tIr~wDlpt~~----------- 609 (910)
T KOG1539|consen 550 AIALDDFSIRVVDVVTRKVV--REFW--GHGNRITDMTFSPDGRWLISASMD-----STIRTWDLPTGT----------- 609 (910)
T ss_pred hhhcCceeEEEEEchhhhhh--HHhh--ccccceeeeEeCCCCcEEEEeecC-----CcEEEEeccCcc-----------
Confidence 00123345777776653211 1122 223346788999999999987653 458899998752
Q ss_pred CCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEE
Q 003878 349 LLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVD 390 (789)
Q Consensus 349 ~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~d 390 (789)
....+.-+.....-.+||+|+.|+..+-. ...||.|.
T Consensus 610 --lID~~~vd~~~~sls~SPngD~LAT~Hvd---~~gIylWs 646 (910)
T KOG1539|consen 610 --LIDGLLVDSPCTSLSFSPNGDFLATVHVD---QNGIYLWS 646 (910)
T ss_pred --eeeeEecCCcceeeEECCCCCEEEEEEec---CceEEEEE
Confidence 11111111111223489999988755432 23577765
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.34 Score=50.04 Aligned_cols=235 Identities=11% Similarity=0.097 Sum_probs=120.6
Q ss_pred EeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceee--------eeecccccccccccc
Q 003878 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFH--------LTISLLNVPTYKLFL 206 (789)
Q Consensus 135 ~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~p~~~~~~ 206 (789)
..+.++||-+-+++.+. +|+ .|+++-+...+. |.+++++=..+| +.+-.+.+.++
T Consensus 136 T~V~FapDc~s~vv~~~-~g~---~l~vyk~~K~~d---------G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~---- 198 (420)
T KOG2096|consen 136 TRVVFAPDCKSVVVSVK-RGN---KLCVYKLVKKTD---------GSGSHHFVHIDNLEFERKHQVDIINIGIAGN---- 198 (420)
T ss_pred eEEEECCCcceEEEEEc-cCC---EEEEEEeeeccc---------CCCCcccccccccccchhcccceEEEeecCC----
Confidence 35779999999999887 554 566665432211 000111100010 11112333333
Q ss_pred ccccceeeEEEeeeccccceeeeeeec---------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEE
Q 003878 207 YLRGIFFFFYLFSLVKSTIYSFWSVVS---------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEF 277 (789)
Q Consensus 207 ~~~~~~~~~~~~~s~~~g~~~l~~~~~---------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i 277 (789)
.+++++...+.+.-||..-. |.+....+-||||+.|+...+.. .+
T Consensus 199 -------~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTp-------------------DV 252 (420)
T KOG2096|consen 199 -------AKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTP-------------------DV 252 (420)
T ss_pred -------ceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEecCCC-------------------Cc
Confidence 25566667777778887655 56667789999999999876532 12
Q ss_pred EEEEC--CCCC--CCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCC-CCCcccccccCCCCcc
Q 003878 278 YYHFL--GTKQ--SEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL-PEGLEGFKKRDGLLPF 352 (789)
Q Consensus 278 ~~~~l--g~~~--~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~ 352 (789)
.+|.+ +.+. .+...+|+...+...+.+++||++.++++-.+.++ .-+||=.|+.=. .+....++. . +
T Consensus 253 kVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG---~wriwdtdVrY~~~qDpk~Lk~---g-~- 324 (420)
T KOG2096|consen 253 KVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG---KWRIWDTDVRYEAGQDPKILKE---G-S- 324 (420)
T ss_pred eEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCC---cEEEeeccceEecCCCchHhhc---C-C-
Confidence 33321 2111 12234566655555667889999999987665443 234443333210 000001110 0 0
Q ss_pred Eeeec-cccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEe
Q 003878 353 VKLID-GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLS 426 (789)
Q Consensus 353 ~~l~~-~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~ 426 (789)
.++.. +....--..+|.|+.|++... ..|-.+..+.++...++ ..-....|..++++.+++.+++..+
T Consensus 325 ~pl~aag~~p~RL~lsP~g~~lA~s~g-----s~l~~~~se~g~~~~~~-e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 325 APLHAAGSEPVRLELSPSGDSLAVSFG-----SDLKVFASEDGKDYPEL-EDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred cchhhcCCCceEEEeCCCCcEEEeecC-----CceEEEEcccCccchhH-HHhhcCceeeEEecCCCcEEeeecc
Confidence 11111 111111237899998886432 33555555555421111 1111245788899886666655443
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.011 Score=65.42 Aligned_cols=102 Identities=12% Similarity=0.093 Sum_probs=57.3
Q ss_pred CCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCC
Q 003878 271 SNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 350 (789)
Q Consensus 271 ~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 350 (789)
..++..|.+|++.+....-.++ .+...+++++|||||+.++-...+ ..|+++....+++ .+.++ +.
T Consensus 696 asyd~Ti~lWDl~~~~~~~~l~----gHtdqIf~~AWSpdGr~~AtVcKD-----g~~rVy~Prs~e~---pv~Eg--~g 761 (1012)
T KOG1445|consen 696 ASYDSTIELWDLANAKLYSRLV----GHTDQIFGIAWSPDGRRIATVCKD-----GTLRVYEPRSREQ---PVYEG--KG 761 (1012)
T ss_pred hhccceeeeeehhhhhhhheec----cCcCceeEEEECCCCcceeeeecC-----ceEEEeCCCCCCC---ccccC--CC
Confidence 4466789999998754332222 234457799999999999877643 4477777665431 11110 00
Q ss_pred ccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEEC
Q 003878 351 PFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDL 391 (789)
Q Consensus 351 ~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl 391 (789)
+ +....+. ..|.-||+.+++..-.....-+|.+++.
T Consensus 762 p----vgtRgAR-i~wacdgr~viv~Gfdk~SeRQv~~Y~A 797 (1012)
T KOG1445|consen 762 P----VGTRGAR-ILWACDGRIVIVVGFDKSSERQVQMYDA 797 (1012)
T ss_pred C----ccCccee-EEEEecCcEEEEecccccchhhhhhhhh
Confidence 0 1111222 2366688877766544333344555554
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.016 Score=68.89 Aligned_cols=204 Identities=13% Similarity=0.035 Sum_probs=117.5
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
+.++.|.+...-+.-+. ....+|++|++...... ..+.....+..+..++|...-++|+.
T Consensus 119 V~gLDfN~~q~nlLASG------------------a~~geI~iWDlnn~~tP--~~~~~~~~~~eI~~lsWNrkvqhILA 178 (1049)
T KOG0307|consen 119 VLGLDFNPFQGNLLASG------------------ADDGEILIWDLNKPETP--FTPGSQAPPSEIKCLSWNRKVSHILA 178 (1049)
T ss_pred eeeeeccccCCceeecc------------------CCCCcEEEeccCCcCCC--CCCCCCCCcccceEeccchhhhHHhh
Confidence 45677777766444331 22345899998653211 11111111223456788877777765
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc---ceeEEEecCCCEEEEEECCCCCCceEEEEECCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD---AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE 393 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~ 393 (789)
+... +...-++|+... .+...+..... .....|.|++-.-+++...+...-.|.++|+.-
T Consensus 179 S~s~----sg~~~iWDlr~~-------------~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ 241 (1049)
T KOG0307|consen 179 SGSP----SGRAVIWDLRKK-------------KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRF 241 (1049)
T ss_pred ccCC----CCCceeccccCC-------------CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccc
Confidence 5432 234667888762 22333333221 122348898755444444333456788888765
Q ss_pred CCC-eEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcC
Q 003878 394 PND-WFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS 471 (789)
Q Consensus 394 ~~~-~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss 471 (789)
... .+++.-|. .-+-+++|.+. .+++++.-.|+ ++..|+.++|+.+..+.....-+..+.|.|.... .++..+
T Consensus 242 assP~k~~~~H~--~GilslsWc~~D~~lllSsgkD~--~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~-~~A~as 316 (1049)
T KOG0307|consen 242 ASSPLKILEGHQ--RGILSLSWCPQDPRLLLSSGKDN--RIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPS-VMAAAS 316 (1049)
T ss_pred cCCchhhhcccc--cceeeeccCCCCchhhhcccCCC--CeeEecCCCceEeeecCCCCcceeeeeecCCCcc-hhhhhe
Confidence 432 23343343 44668899874 58888888886 8999999999887776653222446777776553 345567
Q ss_pred CCCCcEEEEEE
Q 003878 472 FLIPGIVYQCN 482 (789)
Q Consensus 472 ~~~P~~ly~~d 482 (789)
+...-.||-+-
T Consensus 317 fdgkI~I~sl~ 327 (1049)
T KOG0307|consen 317 FDGKISIYSLQ 327 (1049)
T ss_pred eccceeeeeee
Confidence 76666666554
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.2 Score=57.09 Aligned_cols=139 Identities=11% Similarity=0.068 Sum_probs=84.5
Q ss_pred CeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEE-EecCCCEEEEEE
Q 003878 299 PKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV-IANDDTVFTFLT 377 (789)
Q Consensus 299 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~dG~~l~~~t 377 (789)
+..+..++++|+.+.++-.+.+. +-.||.++ .+ ...-.+.......+.+ |++..+.+. .+
T Consensus 463 dKdIN~Vaia~ndkLiAT~SqDk---taKiW~le--~~-------------~l~~vLsGH~RGvw~V~Fs~~dq~la-T~ 523 (775)
T KOG0319|consen 463 DKDINCVAIAPNDKLIATGSQDK---TAKIWDLE--QL-------------RLLGVLSGHTRGVWCVSFSKNDQLLA-TC 523 (775)
T ss_pred cccccceEecCCCceEEeccccc---ceeeeccc--Cc-------------eEEEEeeCCccceEEEEeccccceeE-ec
Confidence 44466899999999888666543 35566554 31 1111222222223433 788766544 22
Q ss_pred CCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEee
Q 003878 378 NKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAIS 457 (789)
Q Consensus 378 n~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s 457 (789)
. ++..|-.|.+++..-.+++-.|. ..+.-+++..++.-+++.-.+| -|.+|+.++++....+..+...+-+++
T Consensus 524 S---gD~TvKIW~is~fSClkT~eGH~--~aVlra~F~~~~~qliS~~adG--liKlWnikt~eC~~tlD~H~DrvWaL~ 596 (775)
T KOG0319|consen 524 S---GDKTVKIWSISTFSCLKTFEGHT--SAVLRASFIRNGKQLISAGADG--LIKLWNIKTNECEMTLDAHNDRVWALS 596 (775)
T ss_pred c---CCceEEEEEeccceeeeeecCcc--ceeEeeeeeeCCcEEEeccCCC--cEEEEeccchhhhhhhhhccceeEEEe
Confidence 2 23556666666665344443343 3444555555467777777777 688899998887777877766676788
Q ss_pred cccCCc
Q 003878 458 ARREDS 463 (789)
Q Consensus 458 ~s~d~~ 463 (789)
.++.++
T Consensus 597 ~~~~~~ 602 (775)
T KOG0319|consen 597 VSPLLD 602 (775)
T ss_pred ecCccc
Confidence 777777
|
|
| >PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3 | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0056 Score=66.09 Aligned_cols=113 Identities=12% Similarity=0.052 Sum_probs=63.1
Q ss_pred CCCccEEEEEcCCCCccCCCCCCH-HHHHHHHc--CCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHH
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSV-SRTILMRH--LGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLIS 611 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~-~~~~~l~~--~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~ 611 (789)
+...|+++++||--+......+.. ....++.. ..+.|+++|+..+... .+..+. . +-...-.-+...+..|.+
T Consensus 68 n~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~--~Y~~a~-~-n~~~vg~~la~~l~~L~~ 143 (331)
T PF00151_consen 68 NPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASN--NYPQAV-A-NTRLVGRQLAKFLSFLIN 143 (331)
T ss_dssp -TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS---HHHHH-H-HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccc--cccchh-h-hHHHHHHHHHHHHHHHHh
Confidence 457899999999666552334333 33456665 5899999998643321 111110 0 000111233445667775
Q ss_pred cCCCCCCcEEEEeeChHHHHHHHHHHhCCC--ceeEEEecCC
Q 003878 612 AGYTQSRKLCIEGGSNGGLLVGACINQRPD--LFGCALAHVG 651 (789)
Q Consensus 612 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd--~f~a~v~~~p 651 (789)
...+++++|-++|||.|+.+++.+..+-.. .+..+...-|
T Consensus 144 ~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDP 185 (331)
T PF00151_consen 144 NFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDP 185 (331)
T ss_dssp HH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-
T ss_pred hcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCc
Confidence 555789999999999999999999887655 5555555444
|
1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A .... |
| >KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.003 Score=68.60 Aligned_cols=112 Identities=24% Similarity=0.243 Sum_probs=72.5
Q ss_pred EEEEEcCCCCccCCCC---CCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHc---C
Q 003878 540 CLLYGYGGFNISVTPS---FSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA---G 613 (789)
Q Consensus 540 ~ll~~hGg~~~~~~~~---~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~---~ 613 (789)
++|++|||.-.+..+. |+... +.+....+|+.+|||-|. ||--+.-......+.-.+-|..=|++|+.++ -
T Consensus 137 VlVWiyGGGF~sGt~SLdvYdGk~--la~~envIvVs~NYRvG~-FGFL~l~~~~eaPGNmGl~DQqLAl~WV~~Ni~aF 213 (601)
T KOG4389|consen 137 VLVWIYGGGFYSGTPSLDVYDGKF--LAAVENVIVVSMNYRVGA-FGFLYLPGHPEAPGNMGLLDQQLALQWVQENIAAF 213 (601)
T ss_pred EEEEEEcCccccCCcceeeeccce--eeeeccEEEEEeeeeecc-ceEEecCCCCCCCCccchHHHHHHHHHHHHhHHHh
Confidence 9999999854444444 44432 223345889999999643 3321111111223333467788888998876 2
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHhCCC---ceeEEEecCCcccc
Q 003878 614 YTQSRKLCIEGGSNGGLLVGACINQRPD---LFGCALAHVGVMDM 655 (789)
Q Consensus 614 ~~d~~~i~i~G~S~GG~l~~~~~~~~pd---~f~a~v~~~p~~d~ 655 (789)
--||+||.+.|.|+|+..+.+-+.- |. +|+-+|+++|-++-
T Consensus 214 GGnp~~vTLFGESAGaASv~aHLls-P~S~glF~raIlQSGS~~~ 257 (601)
T KOG4389|consen 214 GGNPSRVTLFGESAGAASVVAHLLS-PGSRGLFHRAILQSGSLNN 257 (601)
T ss_pred CCCcceEEEeccccchhhhhheecC-CCchhhHHHHHhhcCCCCC
Confidence 3599999999999998776654433 43 89999999886653
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.35 Score=51.37 Aligned_cols=126 Identities=17% Similarity=0.221 Sum_probs=83.3
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
++..+-.+.|.|=...++- +|+|..+|.||.+-.+-......+.+. +..- .
T Consensus 80 Ht~~vLDi~w~PfnD~vIA----SgSeD~~v~vW~IPe~~l~~~ltepvv-~L~g----------------H-------- 130 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIA----SGSEDTKVMVWQIPENGLTRDLTEPVV-ELYG----------------H-------- 130 (472)
T ss_pred ccccccccccCccCCceee----cCCCCceEEEEECCCcccccCcccceE-EEee----------------c--------
Confidence 4566777889996655442 789999999999876632211111110 0000 0
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
+-+.+.++|.|-..-++.+ ++..+.|.+|++||+..
T Consensus 131 ------------------------~rrVg~V~wHPtA~NVLls------------------ag~Dn~v~iWnv~tgea-- 166 (472)
T KOG0303|consen 131 ------------------------QRRVGLVQWHPTAPNVLLS------------------AGSDNTVSIWNVGTGEA-- 166 (472)
T ss_pred ------------------------ceeEEEEeecccchhhHhh------------------ccCCceEEEEeccCCce--
Confidence 1146889999988777765 44567899999999743
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCC
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 336 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g 336 (789)
.+.. +++..+.+..|+.||.+++-++. ...|.++|..++
T Consensus 167 li~l---~hpd~i~S~sfn~dGs~l~Ttck-----DKkvRv~dpr~~ 205 (472)
T KOG0303|consen 167 LITL---DHPDMVYSMSFNRDGSLLCTTCK-----DKKVRVIDPRRG 205 (472)
T ss_pred eeec---CCCCeEEEEEeccCCceeeeecc-----cceeEEEcCCCC
Confidence 2222 25667889999999999986653 355888988775
|
|
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0089 Score=49.92 Aligned_cols=57 Identities=16% Similarity=0.057 Sum_probs=42.2
Q ss_pred eEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCC
Q 003878 520 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 583 (789)
Q Consensus 520 ~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g 583 (789)
.+|....+.|++ .+..+|+++||-...+. .|.. ....|+++||.|+..|.||.|...
T Consensus 2 ~~L~~~~w~p~~----~~k~~v~i~HG~~eh~~--ry~~-~a~~L~~~G~~V~~~D~rGhG~S~ 58 (79)
T PF12146_consen 2 TKLFYRRWKPEN----PPKAVVVIVHGFGEHSG--RYAH-LAEFLAEQGYAVFAYDHRGHGRSE 58 (79)
T ss_pred cEEEEEEecCCC----CCCEEEEEeCCcHHHHH--HHHH-HHHHHHhCCCEEEEECCCcCCCCC
Confidence 677777777775 26789999999644332 3443 456677799999999999988654
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.2 Score=54.95 Aligned_cols=201 Identities=15% Similarity=0.113 Sum_probs=112.7
Q ss_pred EEEeEEeCCC--CcEEEEEEecCCceEEEEEEEEcCCCceec-ccccccccccccCccceeeeeeccccccccccccccc
Q 003878 133 ALIKVSVSED--AKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 133 ~~~~~~~SpD--g~~la~~~~~~g~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
.+..+++||- ++-|||-.-..++...+++++.+..+..+. ..+-.+.+| + |.|=-
T Consensus 175 gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~-------------q---------LkW~~ 232 (561)
T COG5354 175 GILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV-------------Q---------LKWQV 232 (561)
T ss_pred ceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc-------------E---------EEEec
Confidence 4677889995 566788766666667889999988765543 222222222 2 33434
Q ss_pred cceeeEEEee----eccccc--eeeeeeec---------ccc--cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCC
Q 003878 210 GIFFFFYLFS----LVKSTI--YSFWSVVS---------QFK--FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN 272 (789)
Q Consensus 210 ~~~~~~~~~~----s~~~g~--~~l~~~~~---------~~~--~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~ 272 (789)
.+.|.-++-. |+.+-- .+||.+.. .++ +..++|.|++++|+++....
T Consensus 233 ~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~---------------- 296 (561)
T COG5354 233 LGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYM---------------- 296 (561)
T ss_pred CCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEeccc----------------
Confidence 4444444332 333333 46666655 111 36799999999999986432
Q ss_pred cccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCcc
Q 003878 273 LYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPF 352 (789)
Q Consensus 273 ~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 352 (789)
+..+-.+++.+. +++-.|+.... ...+||.++|+++..-+.. ...+-+++..+. ...
T Consensus 297 -pa~~s~~~lr~N-----l~~~~Pe~~rN--T~~fsp~~r~il~agF~nl--~gni~i~~~~~r-------------f~~ 353 (561)
T COG5354 297 -PASVSVFDLRGN-----LRFYFPEQKRN--TIFFSPHERYILFAGFDNL--QGNIEIFDPAGR-------------FKV 353 (561)
T ss_pred -ccceeecccccc-----eEEecCCcccc--cccccCcccEEEEecCCcc--ccceEEeccCCc-------------eEE
Confidence 233555555432 33333322221 3567999999998765544 334555666542 111
Q ss_pred EeeeccccceeEEEecCCCEEEEEECC--CCCCceEEEEECCCC
Q 003878 353 VKLIDGFDAQYEVIANDDTVFTFLTNK--DAPKYKIIRVDLKEP 394 (789)
Q Consensus 353 ~~l~~~~~~~~~~~s~dG~~l~~~tn~--~~~~~~L~~~dl~~~ 394 (789)
...+.+....++.|+|||+.++.-+.. ...+..+-++++.+.
T Consensus 354 ~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 354 AGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred EEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 112334455677899999866644332 122344555555443
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.21 Score=52.74 Aligned_cols=169 Identities=15% Similarity=0.097 Sum_probs=94.4
Q ss_pred eeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCC-CCCccccc-----------ccCCCCccEeeecccccee-EEE
Q 003878 300 KYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL-PEGLEGFK-----------KRDGLLPFVKLIDGFDAQY-EVI 366 (789)
Q Consensus 300 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~-~~~ 366 (789)
..+.+++..+||.+++-.+.+ +.|-+++.++- .+..+... ......|+..+....+..- ..|
T Consensus 194 ~~V~sVsv~~sgtr~~SgS~D-----~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 194 RSVDSVSVDSSGTRFCSGSWD-----TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred cceeEEEecCCCCeEEeeccc-----ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 345678888999887655443 23444442211 11111110 0011123333333333222 236
Q ss_pred ecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCc--e-e
Q 003878 367 ANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGS--L-L 443 (789)
Q Consensus 367 s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~--~-~ 443 (789)
++ ...+|-.+ -+..|.++|+.++.....++.. ..+..++..+..+|++....+. +|++||+.+|. . .
T Consensus 269 ~d-~~v~yS~S----wDHTIk~WDletg~~~~~~~~~---ksl~~i~~~~~~~Ll~~gssdr--~irl~DPR~~~gs~v~ 338 (423)
T KOG0313|consen 269 SD-ATVIYSVS----WDHTIKVWDLETGGLKSTLTTN---KSLNCISYSPLSKLLASGSSDR--HIRLWDPRTGDGSVVS 338 (423)
T ss_pred cC-CCceEeec----ccceEEEEEeecccceeeeecC---cceeEeecccccceeeecCCCC--ceeecCCCCCCCceeE
Confidence 54 44555332 2467999999987634444433 3466777776567887777664 78999997653 2 2
Q ss_pred eecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 444 HQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 444 ~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
..+..+..-|+++.++|.....+++.+ .-+++-+||+.+-
T Consensus 339 ~s~~gH~nwVssvkwsp~~~~~~~S~S---~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 339 QSLIGHKNWVSSVKWSPTNEFQLVSGS---YDNTVKLWDVRST 378 (423)
T ss_pred EeeecchhhhhheecCCCCceEEEEEe---cCCeEEEEEeccC
Confidence 233334556778889988877766543 4457778887654
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.46 Score=51.32 Aligned_cols=203 Identities=13% Similarity=0.070 Sum_probs=116.5
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC-----cEEEEecCCCCeeEEEEEEecCCc
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE-----DILCWKDPEHPKYIFSGHVTEDGQ 312 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~-----~~~~~~~~~~~~~~~~~~~SpDG~ 312 (789)
.++.|++.-..-..+. ....++.+|++.....+ ...+|... ...+..++|.+-.+
T Consensus 181 ~glsWn~~~~g~Lls~------------------~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h--~~~VeDV~~h~~h~ 240 (422)
T KOG0264|consen 181 YGLSWNRQQEGTLLSG------------------SDDHTICLWDINAESKEDKVVDPKTIFSGH--EDVVEDVAWHPLHE 240 (422)
T ss_pred cccccccccceeEeec------------------cCCCcEEEEeccccccCCccccceEEeecC--Ccceehhhccccch
Confidence 5678888766655553 23456888888654432 23455543 33356788999888
Q ss_pred EEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEEC
Q 003878 313 YLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDL 391 (789)
Q Consensus 313 ~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl 391 (789)
.|+.++.+ ...+.++|+.+++. .+........ ......|.|.+..++.+. +.+..|.++|+
T Consensus 241 ~lF~sv~d----d~~L~iwD~R~~~~-----------~~~~~~~ah~~~vn~~~fnp~~~~ilAT~---S~D~tV~LwDl 302 (422)
T KOG0264|consen 241 DLFGSVGD----DGKLMIWDTRSNTS-----------KPSHSVKAHSAEVNCVAFNPFNEFILATG---SADKTVALWDL 302 (422)
T ss_pred hhheeecC----CCeEEEEEcCCCCC-----------CCcccccccCCceeEEEeCCCCCceEEec---cCCCcEEEeec
Confidence 88877654 35688899885211 1111111111 112234777665554332 23578999999
Q ss_pred CCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCC-Ccee----------eecccC---CeeEEEe
Q 003878 392 KEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKN-GSLL----------HQLPIE---IGSVNAI 456 (789)
Q Consensus 392 ~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~t-G~~~----------~~l~~~---~~~v~~~ 456 (789)
.+-.. ....-+.....+..+.|+++ +.++++...++ +|.+||+.. |+.. +.|-.+ ...|..+
T Consensus 303 RnL~~-~lh~~e~H~dev~~V~WSPh~etvLASSg~D~--rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Df 379 (422)
T KOG0264|consen 303 RNLNK-PLHTFEGHEDEVFQVEWSPHNETVLASSGTDR--RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDF 379 (422)
T ss_pred hhccc-CceeccCCCcceEEEEeCCCCCceeEecccCC--cEEEEeccccccccChhhhccCCcceeEEecCcccccccc
Confidence 87541 11122233355778999984 56777777776 788888752 2210 111111 3346667
Q ss_pred ecccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 457 SARREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 457 s~s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
+|.|....++.+.+.. ..+..|.+.
T Consensus 380 sWnp~ePW~I~SvaeD---N~LqIW~~s 404 (422)
T KOG0264|consen 380 SWNPNEPWTIASVAED---NILQIWQMA 404 (422)
T ss_pred cCCCCCCeEEEEecCC---ceEEEeecc
Confidence 7888888777765443 556666553
|
|
| >PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.053 Score=55.95 Aligned_cols=62 Identities=10% Similarity=-0.127 Sum_probs=50.3
Q ss_pred CCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHH
Q 003878 706 YPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGF 778 (789)
Q Consensus 706 ~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~f 778 (789)
.+|-|.+.+.+|..|++.+.+++++..++. |.++....+.+++|........ .+....+.+|
T Consensus 178 ~~p~lylYS~~D~l~~~~~ve~~~~~~~~~----------G~~V~~~~f~~S~HV~H~r~~p-~~Y~~~v~~f 239 (240)
T PF05705_consen 178 RCPRLYLYSKADPLIPWRDVEEHAEEARRK----------GWDVRAEKFEDSPHVAHLRKHP-DRYWRAVDEF 239 (240)
T ss_pred CCCeEEecCCCCcCcCHHHHHHHHHHHHHc----------CCeEEEecCCCCchhhhcccCH-HHHHHHHHhh
Confidence 579999999999999999999999999987 9999999999999986544332 3444555554
|
|
| >PTZ00472 serine carboxypeptidase (CBP1); Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0099 Score=67.39 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=77.8
Q ss_pred eEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCH----------------HHHHHHHcCCeEEEEEee-cCCCCC
Q 003878 520 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV----------------SRTILMRHLGAVFCIANI-RGGGEY 582 (789)
Q Consensus 520 ~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~----------------~~~~~l~~~G~~v~~~~~-RG~g~~ 582 (789)
..+-.|++..++. ....|+||+++||||.+...++.. .-..|.. . ..++.+|. +|.| +
T Consensus 61 ~~lFyw~~~s~~~--~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~-~-~~~l~iDqP~G~G-~ 135 (462)
T PTZ00472 61 KHYFYWAFGPRNG--NPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNN-E-AYVIYVDQPAGVG-F 135 (462)
T ss_pred ceEEEEEEEcCCC--CCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCccccc-c-cCeEEEeCCCCcC-c
Confidence 5677777766542 357899999999998875432110 1123433 3 34566664 5644 3
Q ss_pred ChhHHhccc-ccCCcchHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhC---C-------CceeEEEecC
Q 003878 583 GEEWHKGGA-LAKKQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACINQR---P-------DLFGCALAHV 650 (789)
Q Consensus 583 g~~~~~~~~-~~~~~~~~~D~~~~~~~L~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~---p-------d~f~a~v~~~ 650 (789)
... .... ........+|+..+++...++ ......++.|.|+|+||..+-.++.+- . =-+++++...
T Consensus 136 S~~--~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGN 213 (462)
T PTZ00472 136 SYA--DKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGN 213 (462)
T ss_pred ccC--CCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEec
Confidence 221 1111 111123457777777755543 333457999999999998876655431 1 1478999999
Q ss_pred Cccccc
Q 003878 651 GVMDML 656 (789)
Q Consensus 651 p~~d~~ 656 (789)
|++|..
T Consensus 214 g~~dp~ 219 (462)
T PTZ00472 214 GLTDPY 219 (462)
T ss_pred cccChh
Confidence 988764
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.12 Score=54.40 Aligned_cols=119 Identities=10% Similarity=-0.009 Sum_probs=71.0
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
+..+.|||..+.++.+..- ...|.+|++..++.+..+.+...+ ..+.-++|+.+-..|+.
T Consensus 260 VEDLqWSptE~~vfaScS~------------------DgsIrIWDiRs~~~~~~~~~kAh~--sDVNVISWnr~~~lLas 319 (440)
T KOG0302|consen 260 VEDLQWSPTEDGVFASCSC------------------DGSIRIWDIRSGPKKAAVSTKAHN--SDVNVISWNRREPLLAS 319 (440)
T ss_pred hhhhccCCccCceEEeeec------------------CceEEEEEecCCCccceeEeeccC--CceeeEEccCCcceeee
Confidence 5789999999999987532 235888999887766655554433 34556788877774443
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeE-EEecCCCEEEEEECCCCCCceEEEEECCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKE 393 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dG~~l~~~tn~~~~~~~L~~~dl~~ 393 (789)
.. + ...+.++|+..-+. .+|+............ .|+|.....+..+ +.+.+|..+|+.-
T Consensus 320 G~---D--dGt~~iwDLR~~~~----------~~pVA~fk~Hk~pItsieW~p~e~s~iaas---g~D~QitiWDlsv 379 (440)
T KOG0302|consen 320 GG---D--DGTLSIWDLRQFKS----------GQPVATFKYHKAPITSIEWHPHEDSVIAAS---GEDNQITIWDLSV 379 (440)
T ss_pred cC---C--CceEEEEEhhhccC----------CCcceeEEeccCCeeEEEeccccCceEEec---cCCCcEEEEEeec
Confidence 32 2 34577888876321 2222222112222233 3888665555443 3346788888753
|
|
| >KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.024 Score=55.94 Aligned_cols=128 Identities=18% Similarity=0.141 Sum_probs=80.2
Q ss_pred hHHH-HHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC--------ceeEEEecCCcccccccccccCCccch
Q 003878 598 CFDD-FISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD--------LFGCALAHVGVMDMLRYHKFTIGHAWV 668 (789)
Q Consensus 598 ~~~D-~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd--------~f~a~v~~~p~~d~~~~~~~~~~~~~~ 668 (789)
.++- +....+|++++|--| +|.|+|.|+.|++.+++.... -|+-+|...|+.-.
T Consensus 87 ~~eesl~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~------------- 149 (230)
T KOG2551|consen 87 GFEESLEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFP------------- 149 (230)
T ss_pred ChHHHHHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCC-------------
Confidence 3444 444566778887655 899999999999998882210 24555555553321
Q ss_pred hhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCc
Q 003878 669 SDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNP 748 (789)
Q Consensus 669 ~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 748 (789)
+.+.+. ..+ ...+ .+|.|.+.|+.|..||...+..+++.....
T Consensus 150 ---~~~~~~------~~~-----~~~i----------~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a------------- 192 (230)
T KOG2551|consen 150 ---SKKLDE------SAY-----KRPL----------STPSLHIFGETDTIVPSERSEQLAESFKDA------------- 192 (230)
T ss_pred ---cchhhh------hhh-----ccCC----------CCCeeEEecccceeecchHHHHHHHhcCCC-------------
Confidence 001010 111 1122 689999999999999999999999877642
Q ss_pred EEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 749 IIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 749 ~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
.+... .+||...... .....+.+|+...+-.
T Consensus 193 -~vl~H-pggH~VP~~~----~~~~~i~~fi~~~~~~ 223 (230)
T KOG2551|consen 193 -TVLEH-PGGHIVPNKA----KYKEKIADFIQSFLQE 223 (230)
T ss_pred -eEEec-CCCccCCCch----HHHHHHHHHHHHHHHh
Confidence 33444 5889886543 3444566777665543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.045 Score=58.36 Aligned_cols=181 Identities=10% Similarity=0.073 Sum_probs=100.3
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
..+++++||+.++.... .-.+++++..... ++.++..+...+.++++||||+.|+..
T Consensus 148 k~vaf~~~gs~latgg~-------------------dg~lRv~~~Ps~~----t~l~e~~~~~eV~DL~FS~dgk~lasi 204 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGT-------------------DGTLRVWEWPSML----TILEEIAHHAEVKDLDFSPDGKFLASI 204 (398)
T ss_pred eEEEEcCCCCEeeeccc-------------------cceEEEEecCcch----hhhhhHhhcCccccceeCCCCcEEEEe
Confidence 46888888888875432 2246666654321 233334444456789999999999877
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce----eEEEecC--CCEEEEEECCCCCCceEEEEEC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ----YEVIAND--DTVFTFLTNKDAPKYKIIRVDL 391 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~s~d--G~~l~~~tn~~~~~~~L~~~dl 391 (789)
..+ ...++++.+|. ++...++ ++.. -..|+.| +..+++.++.. +...|..+++
T Consensus 205 g~d------~~~VW~~~~g~-------------~~a~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~-~~~~v~~~~~ 263 (398)
T KOG0771|consen 205 GAD------SARVWSVNTGA-------------ALARKTP-FSKDEMFSSCRFSVDNAQETLRLAASQF-PGGGVRLCDI 263 (398)
T ss_pred cCC------ceEEEEeccCc-------------hhhhcCC-cccchhhhhceecccCCCceEEEEEecC-CCCceeEEEe
Confidence 533 24566776641 1222221 1111 1224443 35566666543 3334444444
Q ss_pred C--CCC---CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecc-cCCeeEEEeecccCCcEE
Q 003878 392 K--EPN---DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP-IEIGSVNAISARREDSVV 465 (789)
Q Consensus 392 ~--~~~---~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~-~~~~~v~~~s~s~d~~~l 465 (789)
. .+. .++..+. ....+.+++++.++.+++....+| .|-+++..+=+...-++ .+.+.|..+.++||.+.+
T Consensus 264 ~~w~~~~~l~~~~~~~--~~~siSsl~VS~dGkf~AlGT~dG--sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~ 339 (398)
T KOG0771|consen 264 SLWSGSNFLRLRKKIK--RFKSISSLAVSDDGKFLALGTMDG--SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYL 339 (398)
T ss_pred eeeccccccchhhhhh--ccCcceeEEEcCCCcEEEEeccCC--cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcc
Confidence 2 221 1222222 124688999998788887777776 45556654333222222 235678889999988765
Q ss_pred E
Q 003878 466 F 466 (789)
Q Consensus 466 ~ 466 (789)
.
T Consensus 340 ~ 340 (398)
T KOG0771|consen 340 A 340 (398)
T ss_pred c
Confidence 4
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.14 Score=60.77 Aligned_cols=56 Identities=13% Similarity=0.246 Sum_probs=38.3
Q ss_pred EEEEecCCCCCceEE-eccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCC-ceEEEEEEEEcCCC
Q 003878 106 VLYVQDSLDAKAKVL-LDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSG-SDWATIKLMRIEDQ 168 (789)
Q Consensus 106 ~~~~~~~~~~~~~~l-~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g-~~~~~i~v~dl~tg 168 (789)
.|.+.+..+...+++ +..+ ..+-++.|||||++|||.++..+ .....||+.||.+.
T Consensus 330 ~L~~~D~dG~n~~~ve~~~~-------~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~ 387 (912)
T TIGR02171 330 NLAYIDYTKGASRAVEIEDT-------ISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNAS 387 (912)
T ss_pred eEEEEecCCCCceEEEecCC-------CceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhcc
Confidence 366666544455554 4333 23678999999999999666555 22567999999876
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.43 E-value=1.4 Score=45.49 Aligned_cols=195 Identities=11% Similarity=0.048 Sum_probs=107.1
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEe-cCCcEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVT-EDGQYLVM 316 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~S-pDG~~l~~ 316 (789)
.+++|.++...||++-. ...+|++++..+.. ..++..+. ..++.+. +||+. ++
T Consensus 3 Egp~~d~~~g~l~~~D~------------------~~~~i~~~~~~~~~---~~~~~~~~----~~G~~~~~~~g~l-~v 56 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDI------------------PGGRIYRVDPDTGE---VEVIDLPG----PNGMAFDRPDGRL-YV 56 (246)
T ss_dssp EEEEEETTTTEEEEEET------------------TTTEEEEEETTTTE---EEEEESSS----EEEEEEECTTSEE-EE
T ss_pred cceEEECCCCEEEEEEc------------------CCCEEEEEECCCCe---EEEEecCC----CceEEEEccCCEE-EE
Confidence 57999997788988843 23469998887642 23344443 2356666 66554 44
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-c---ceeEEEecCCCEEEEEECCCC---CC--ceEE
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-D---AQYEVIANDDTVFTFLTNKDA---PK--YKII 387 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~---~~~~~~s~dG~~l~~~tn~~~---~~--~~L~ 387 (789)
... ..+.++|.++++. ..+.....+. . .....++++|+ ||+...... .. ++|+
T Consensus 57 ~~~------~~~~~~d~~~g~~-----------~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~ 118 (246)
T PF08450_consen 57 ADS------GGIAVVDPDTGKV-----------TVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVY 118 (246)
T ss_dssp EET------TCEEEEETTTTEE-----------EEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEE
T ss_pred EEc------CceEEEecCCCcE-----------EEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceE
Confidence 432 2245558776421 1111111110 0 11234788887 776654321 12 6899
Q ss_pred EEECCCCCCeEEeccCCCCceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCC-Cc-e--eeec-ccC--CeeEEEeecc
Q 003878 388 RVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKN-GS-L--LHQL-PIE--IGSVNAISAR 459 (789)
Q Consensus 388 ~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~t-G~-~--~~~l-~~~--~~~v~~~s~s 459 (789)
+++.+ ++ .+.+...- ....++++++++ .||+.....+ +|+.++++. +. . .+.+ .++ .+...++..+
T Consensus 119 ~~~~~-~~-~~~~~~~~--~~pNGi~~s~dg~~lyv~ds~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD 192 (246)
T PF08450_consen 119 RIDPD-GK-VTVVADGL--GFPNGIAFSPDGKTLYVADSFNG--RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD 192 (246)
T ss_dssp EEETT-SE-EEEEEEEE--SSEEEEEEETTSSEEEEEETTTT--EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB
T ss_pred EECCC-Ce-EEEEecCc--ccccceEECCcchheeecccccc--eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc
Confidence 99988 43 34443322 345689999865 4665444443 688888752 22 1 1222 223 3346678888
Q ss_pred cCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 460 REDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 460 ~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.+++ |+++.- ....|+++|.+ |+
T Consensus 193 ~~G~-l~va~~---~~~~I~~~~p~-G~ 215 (246)
T PF08450_consen 193 SDGN-LWVADW---GGGRIVVFDPD-GK 215 (246)
T ss_dssp TTS--EEEEEE---TTTEEEEEETT-SC
T ss_pred CCCC-EEEEEc---CCCEEEEECCC-cc
Confidence 8776 555432 56799999987 64
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.093 Score=55.87 Aligned_cols=131 Identities=11% Similarity=0.006 Sum_probs=76.1
Q ss_pred ccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccE
Q 003878 274 YHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV 353 (789)
Q Consensus 274 ~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 353 (789)
..+|+.|++.+... +..-+.+ ..+.++..|+||..|+..+. .+.+-++|+.+.... .++.
T Consensus 321 DkkvRfwD~Rs~~~----~~sv~~g-g~vtSl~ls~~g~~lLsssR-----Ddtl~viDlRt~eI~----------~~~s 380 (459)
T KOG0288|consen 321 DKKVRFWDIRSADK----TRSVPLG-GRVTSLDLSMDGLELLSSSR-----DDTLKVIDLRTKEIR----------QTFS 380 (459)
T ss_pred ccceEEEeccCCce----eeEeecC-cceeeEeeccCCeEEeeecC-----CCceeeeecccccEE----------EEee
Confidence 34588888765432 2222322 34678999999999986642 234677888763210 0000
Q ss_pred e--eeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCC-CCceeeeEEEecCCEEEEEEEeCCe
Q 003878 354 K--LIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-ERDVLESATAVNLNQMIVSYLSDVK 429 (789)
Q Consensus 354 ~--l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~-~~~~i~~v~~~~~~~lv~~~~~~g~ 429 (789)
. ...+.+..-..|||+|++++ .++.++.|+.|++.+++ .+.++... .+..|..++|.+.+.-+++...+..
T Consensus 381 A~g~k~asDwtrvvfSpd~~Yva----AGS~dgsv~iW~v~tgK-lE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~ 454 (459)
T KOG0288|consen 381 AEGFKCASDWTRVVFSPDGSYVA----AGSADGSVYIWSVFTGK-LEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKA 454 (459)
T ss_pred ccccccccccceeEECCCCceee----eccCCCcEEEEEccCce-EEEEeccCCCCcceEEEEEcCCCchhhcccCCcc
Confidence 0 00111222356899999776 34567899999999887 44444332 2235788888875444444444443
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.082 Score=54.18 Aligned_cols=210 Identities=10% Similarity=0.123 Sum_probs=109.4
Q ss_pred eEEeccCCCCCC-------CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCcccee
Q 003878 118 KVLLDPNTLSDD-------GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFF 190 (789)
Q Consensus 118 ~~l~d~~~~~~~-------~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~ 190 (789)
.-|+|..+-+.. +...+.++++.|.|.+|+. |.+..+++++|+.|-+...-..... +|..
T Consensus 196 vKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllv-----gTdHp~~rlYdv~T~QcfvsanPd~----qht~---- 262 (430)
T KOG0640|consen 196 VKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLV-----GTDHPTLRLYDVNTYQCFVSANPDD----QHTG---- 262 (430)
T ss_pred EEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEE-----ecCCCceeEEeccceeEeeecCccc----cccc----
Confidence 456776543321 2345789999999999995 5567899999999875332111111 1111
Q ss_pred eeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCcccc
Q 003878 191 HLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 270 (789)
Q Consensus 191 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~ 270 (789)
....+.+|+.|+ ||.+...
T Consensus 263 ---------------------------------------------ai~~V~Ys~t~~-lYvTaSk--------------- 281 (430)
T KOG0640|consen 263 ---------------------------------------------AITQVRYSSTGS-LYVTASK--------------- 281 (430)
T ss_pred ---------------------------------------------ceeEEEecCCcc-EEEEecc---------------
Confidence 146778888874 5555321
Q ss_pred CCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCC
Q 003878 271 SNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 350 (789)
Q Consensus 271 ~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 350 (789)
.-.|.+|+--+.. =+..++...+...+.+..|+.+|+||+-+.. .+-+++|.+.++.
T Consensus 282 ---DG~IklwDGVS~r--Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~-----DS~vkLWEi~t~R------------- 338 (430)
T KOG0640|consen 282 ---DGAIKLWDGVSNR--CVRTIGNAHGGSEVCSAVFTKNGKYILSSGK-----DSTVKLWEISTGR------------- 338 (430)
T ss_pred ---CCcEEeeccccHH--HHHHHHhhcCCceeeeEEEccCCeEEeecCC-----cceeeeeeecCCc-------------
Confidence 1235555421110 0111222222344678899999999975432 4668888888741
Q ss_pred ccEeeecc----ccc--eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEE
Q 003878 351 PFVKLIDG----FDA--QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSY 424 (789)
Q Consensus 351 ~~~~l~~~----~~~--~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~ 424 (789)
+++.-+.. ... ....|.+..+++++- .+ ....|+.||..+.. -..+.+-+......-+.-++.+-.++..
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~p--DE-as~slcsWdaRtad-r~~l~slgHn~a~R~i~HSP~~p~FmTc 414 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFP--DE-ASNSLCSWDARTAD-RVALLSLGHNGAVRWIVHSPVEPAFMTC 414 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEcc--cc-ccCceeeccccchh-hhhhcccCCCCCceEEEeCCCCCceeee
Confidence 12222110 000 112344444443332 22 23568888876654 2334443333334444444434455555
Q ss_pred EeCC
Q 003878 425 LSDV 428 (789)
Q Consensus 425 ~~~g 428 (789)
++|-
T Consensus 415 sdD~ 418 (430)
T KOG0640|consen 415 SDDF 418 (430)
T ss_pred cccc
Confidence 5554
|
|
| >KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.017 Score=61.78 Aligned_cols=132 Identities=21% Similarity=0.243 Sum_probs=84.8
Q ss_pred EEEEEEEecCCCCCCCCccEEEEEcCCCCc----cCCCCCCHHHHHHHHcCCeEEEEEeecCCCC---CChhHHhccc--
Q 003878 521 KIPMFIVSKKNIKLDGSHPCLLYGYGGFNI----SVTPSFSVSRTILMRHLGAVFCIANIRGGGE---YGEEWHKGGA-- 591 (789)
Q Consensus 521 ~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~----~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~---~g~~~~~~~~-- 591 (789)
+-+..+..-...-..+..|+++|. |.-|. ....+| +..+..+.+-.++.+..|=-|+ ||.+-+....
T Consensus 64 tF~qRylin~~fw~~g~gPIffYt-GNEGdie~Fa~ntGF---m~D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~~~hl 139 (492)
T KOG2183|consen 64 TFDQRYLINDDFWKKGEGPIFFYT-GNEGDIEWFANNTGF---MWDLAPELKALLVFAEHRYYGESLPFGSQSYKDARHL 139 (492)
T ss_pred ceeeEEEEecccccCCCCceEEEe-CCcccHHHHHhccch---HHhhhHhhCceEEEeehhccccCCCCcchhccChhhh
Confidence 344444444443333447888776 22111 111222 2344556788889999886554 5655222211
Q ss_pred -ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEE-ecCCccccc
Q 003878 592 -LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCAL-AHVGVMDML 656 (789)
Q Consensus 592 -~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v-~~~p~~d~~ 656 (789)
...-+.+..|+...+.+|..........|+++|+|+||+|+++.=.++|++..+++ +.+|++-+.
T Consensus 140 gyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSAPvl~f~ 206 (492)
T KOG2183|consen 140 GYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASAPVLYFE 206 (492)
T ss_pred ccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccCceEeec
Confidence 12234568999999999998866777899999999999999999999999776654 456766543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.26 Score=52.12 Aligned_cols=151 Identities=16% Similarity=0.080 Sum_probs=91.6
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
+.++.|++ ...+|+ ..-.+.|..|++.++...+.+.. ...+..+..+|..+.|+-
T Consensus 263 Vs~V~w~d--~~v~yS------------------~SwDHTIk~WDletg~~~~~~~~-----~ksl~~i~~~~~~~Ll~~ 317 (423)
T KOG0313|consen 263 VSSVVWSD--ATVIYS------------------VSWDHTIKVWDLETGGLKSTLTT-----NKSLNCISYSPLSKLLAS 317 (423)
T ss_pred eeeEEEcC--CCceEe------------------ecccceEEEEEeecccceeeeec-----CcceeEeecccccceeee
Confidence 57899985 445555 23457899999998766544332 223567888998887765
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
.+. ...+.++|..++. + ..+...+...-. ..-.-|+|-....++... -+..+.++|+.+..
T Consensus 318 gss-----dr~irl~DPR~~~-g---------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S---~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 318 GSS-----DRHIRLWDPRTGD-G---------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS---YDNTVKLWDVRSTK 379 (423)
T ss_pred cCC-----CCceeecCCCCCC-C---------ceeEEeeecchhhhhheecCCCCceEEEEEe---cCCeEEEEEeccCC
Confidence 543 3457888887742 1 122223333211 111238886555544333 24678889988765
Q ss_pred -CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEE
Q 003878 396 -DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIR 435 (789)
Q Consensus 396 -~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~ 435 (789)
.+-.+..++ ..+..+.|.+ +.+++++..|. .|+++
T Consensus 380 ~plydI~~h~--DKvl~vdW~~-~~~IvSGGaD~--~l~i~ 415 (423)
T KOG0313|consen 380 APLYDIAGHN--DKVLSVDWNE-GGLIVSGGADN--KLRIF 415 (423)
T ss_pred CcceeeccCC--ceEEEEeccC-CceEEeccCcc--eEEEe
Confidence 455666664 5677889987 66777776665 44443
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.30 E-value=2 Score=47.14 Aligned_cols=282 Identities=13% Similarity=0.084 Sum_probs=149.0
Q ss_pred CCceEEeccCCCCCCC-----c--EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec-ccccc-cccccccC
Q 003878 115 AKAKVLLDPNTLSDDG-----T--AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSW-VCFCFSHS 185 (789)
Q Consensus 115 ~~~~~l~d~~~~~~~~-----~--~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~-~~~~~-~~~~~~~~ 185 (789)
|....|.|...++... + -.+.++.|+.... |. +.+.+|.....|+..|=.++++-. ...++ ...|
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lv-vas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~C---- 84 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LV-VASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFC---- 84 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeeccccce-EE-EeecCCceeEEEecccCCCCccceeeccccchHHH----
Confidence 4456777777665331 1 1245566666543 33 334456555666666666554211 11111 0111
Q ss_pred ccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCC
Q 003878 186 FGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 265 (789)
Q Consensus 186 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~ 265 (789)
+.-+.++.++.+..-+++-+||.+..++-...+. -|. .++.|+.++..++ .
T Consensus 85 ----------------------v~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lk-dh~-stvt~v~YN~~De----y- 135 (673)
T KOG4378|consen 85 ----------------------VACASQSLYEISGGQSGCVKIWDLRAKLIHRFLK-DHQ-STVTYVDYNNTDE----Y- 135 (673)
T ss_pred ----------------------HhhhhcceeeeccCcCceeeehhhHHHHHhhhcc-CCc-ceeEEEEecCCcc----e-
Confidence 2234455566677788999999875421111111 122 3555555544221 0
Q ss_pred CccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccc
Q 003878 266 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 345 (789)
Q Consensus 266 ~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 345 (789)
.......-.|-+|.+.+++.. ..|..+.+ ..+.-+.+||..++++..+.+. ..|.+||+.+.. .
T Consensus 136 --iAsvs~gGdiiih~~~t~~~t--t~f~~~sg-qsvRll~ys~skr~lL~~asd~----G~VtlwDv~g~s----p--- 199 (673)
T KOG4378|consen 136 --IASVSDGGDIIIHGTKTKQKT--TTFTIDSG-QSVRLLRYSPSKRFLLSIASDK----GAVTLWDVQGMS----P--- 199 (673)
T ss_pred --eEEeccCCcEEEEecccCccc--cceecCCC-CeEEEeecccccceeeEeeccC----CeEEEEeccCCC----c---
Confidence 000112234788888777654 23443322 2234578999999998777543 457888887621 0
Q ss_pred cCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEE
Q 003878 346 RDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 425 (789)
Q Consensus 346 ~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~ 425 (789)
...+...-.. ...-..++|....|++... -+.+|+.+|.........|+.. ..+..+++.+++..++...
T Consensus 200 ---~~~~~~~HsA-P~~gicfspsne~l~vsVG---~Dkki~~yD~~s~~s~~~l~y~---~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 200 ---IFHASEAHSA-PCRGICFSPSNEALLVSVG---YDKKINIYDIRSQASTDRLTYS---HPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred ---ccchhhhccC-CcCcceecCCccceEEEec---ccceEEEeecccccccceeeec---CCcceeeecCCceEEEeec
Confidence 1111111000 0011237886666665443 3478999998765433444433 4578899998788888888
Q ss_pred eCCeEEEEEEECCCCce-eeecccCCeeEEEeecc
Q 003878 426 SDVKYVLQIRDLKNGSL-LHQLPIEIGSVNAISAR 459 (789)
Q Consensus 426 ~~g~~~L~~~dl~tG~~-~~~l~~~~~~v~~~s~s 459 (789)
.+| +|+.||+..-+. +..+......|..++|.
T Consensus 270 s~G--~~i~YD~R~~k~Pv~v~sah~~sVt~vafq 302 (673)
T KOG4378|consen 270 SKG--ELIAYDMRSTKAPVAVRSAHDASVTRVAFQ 302 (673)
T ss_pred CCc--eEEEEecccCCCCceEeeecccceeEEEee
Confidence 777 899999973332 22222233445555543
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.47 Score=51.93 Aligned_cols=69 Identities=13% Similarity=0.071 Sum_probs=44.1
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
.+-+++||||..|++...++ .||++.+...... ......-. ..++..+.||+|++++.-
T Consensus 450 ls~v~ysp~G~~lAvgs~d~-------------------~iyiy~Vs~~g~~-y~r~~k~~-gs~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 450 LSVVRYSPDGAFLAVGSHDN-------------------HIYIYRVSANGRK-YSRVGKCS-GSPITHLDWSSDSQFLVS 508 (626)
T ss_pred eEEEEEcCCCCEEEEecCCC-------------------eEEEEEECCCCcE-EEEeeeec-CceeEEeeecCCCceEEe
Confidence 36789999999999875442 4777776554332 12222212 245678999999999975
Q ss_pred EEEcCCCCceEEEEE
Q 003878 317 CIEENCDPVNKVYYC 331 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~ 331 (789)
.+. ..+|..+
T Consensus 509 ~S~-----d~eiLyW 518 (626)
T KOG2106|consen 509 NSG-----DYEILYW 518 (626)
T ss_pred ccC-----ceEEEEE
Confidence 442 3556666
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.21 Score=52.50 Aligned_cols=224 Identities=11% Similarity=0.002 Sum_probs=124.0
Q ss_pred EEEeeeccccceeeeeeec---------ccc-cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCC
Q 003878 215 FYLFSLVKSTIYSFWSVVS---------QFK-FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT 284 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~---------~~~-~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~ 284 (789)
.+.+++.++++.++|...- .++ ..+++++.-|+.|+-...+ . .+.+|+.++
T Consensus 121 ~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsD-----------------l--~~~LWd~~~ 181 (406)
T KOG0295|consen 121 ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSD-----------------L--SAKLWDFDT 181 (406)
T ss_pred eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCc-----------------c--chhheeHHH
Confidence 5677888999999998765 111 3567787778777644322 1 156666655
Q ss_pred CCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeE
Q 003878 285 KQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE 364 (789)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 364 (789)
-...-... .++ ..-+..+.+=|-|.+|+-.+. .+.|..++.++|- .........+ =+-
T Consensus 182 ~~~c~ks~-~gh--~h~vS~V~f~P~gd~ilS~sr-----D~tik~We~~tg~-------------cv~t~~~h~e-wvr 239 (406)
T KOG0295|consen 182 FFRCIKSL-IGH--EHGVSSVFFLPLGDHILSCSR-----DNTIKAWECDTGY-------------CVKTFPGHSE-WVR 239 (406)
T ss_pred HHHHHHHh-cCc--ccceeeEEEEecCCeeeeccc-----ccceeEEecccce-------------eEEeccCchH-hEE
Confidence 32111111 112 233557888899988875543 3457888888852 1112221111 011
Q ss_pred EEecCCCEEEEEECCCCCCceEEEEECCCCC------------CeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEE
Q 003878 365 VIANDDTVFTFLTNKDAPKYKIIRVDLKEPN------------DWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYV 431 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~------------~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~ 431 (789)
.+.+.++..++.+.. ....|-.+-+++.+ +.....|...-..+.....+. +..++++.++|+ .
T Consensus 240 ~v~v~~DGti~As~s--~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk--t 315 (406)
T KOG0295|consen 240 MVRVNQDGTIIASCS--NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK--T 315 (406)
T ss_pred EEEecCCeeEEEecC--CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc--e
Confidence 233333333333332 23456666665542 001111111101111111111 135777777776 7
Q ss_pred EEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 432 LQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 432 L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
|..||..+|..+-+|.....-|.+++++|.|+.++ |...-.++..||+..+.
T Consensus 316 Ik~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~----ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 316 IKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYIL----SCADDKTLRVWDLKNLQ 367 (406)
T ss_pred EEEEeccCCeEEEEEecccceeeeeEEcCCCeEEE----EEecCCcEEEEEeccce
Confidence 89999999987666665566688899999888665 33456788889988775
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.24 Score=55.71 Aligned_cols=263 Identities=15% Similarity=0.138 Sum_probs=138.0
Q ss_pred EEEeeeccccceeeeeeeccccc----------------ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEE
Q 003878 215 FYLFSLVKSTIYSFWSVVSQFKF----------------SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFY 278 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~~~~~----------------~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (789)
++||++.++|+..+|.++-.... ..++...+|+.|+-.. ....|.
T Consensus 38 ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~S-------------------sDtTVK 98 (735)
T KOG0308|consen 38 RYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISAS-------------------SDTTVK 98 (735)
T ss_pred ceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEec-------------------CCceEE
Confidence 57999999999999988651110 1222233455554332 233577
Q ss_pred EEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-c
Q 003878 279 YHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-D 357 (789)
Q Consensus 279 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-~ 357 (789)
+|+...+..-..-+.. .|..|+-.++.-...+.++.+. +- ..+|+++|+.+++..+.. .....+...+. .
T Consensus 99 ~W~~~~~~~~c~stir--~H~DYVkcla~~ak~~~lvaSg--GL--D~~IflWDin~~~~~l~~---s~n~~t~~sl~sG 169 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIR--THKDYVKCLAYIAKNNELVASG--GL--DRKIFLWDINTGTATLVA---SFNNVTVNSLGSG 169 (735)
T ss_pred EeecccCcchhHhhhh--cccchheeeeecccCceeEEec--CC--CccEEEEEccCcchhhhh---hccccccccCCCC
Confidence 7766544311111111 2344554455423333444332 22 467999999886421000 00011111222 1
Q ss_pred cccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEEC
Q 003878 358 GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 358 ~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl 437 (789)
..+..|.....+...+++ + ++....|..+|..+.+....|..|. ..+..+.+.+++.-+++.+.|| .|.+||+
T Consensus 170 ~k~siYSLA~N~t~t~iv-s--Ggtek~lr~wDprt~~kimkLrGHT--dNVr~ll~~dDGt~~ls~sSDg--tIrlWdL 242 (735)
T KOG0308|consen 170 PKDSIYSLAMNQTGTIIV-S--GGTEKDLRLWDPRTCKKIMKLRGHT--DNVRVLLVNDDGTRLLSASSDG--TIRLWDL 242 (735)
T ss_pred CccceeeeecCCcceEEE-e--cCcccceEEeccccccceeeeeccc--cceEEEEEcCCCCeEeecCCCc--eEEeeec
Confidence 122234332222222332 2 2345678888988877566676666 4577777877777888888887 7899999
Q ss_pred CCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeeeccCCCCCCCCCc--EEEEEEec
Q 003878 438 KNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFH--VHQVFVPS 515 (789)
Q Consensus 438 ~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~~~~~~~~~~~~~--~~~~~~~s 515 (789)
..-+.+..+..+...+-++..+++-..++. -..-+.+|+-|+.+.. +.+++..+.-| ...-.+. .+.+|+.+
T Consensus 243 gqQrCl~T~~vH~e~VWaL~~~~sf~~vYs----G~rd~~i~~Tdl~n~~-~~tlick~daP-v~~l~~~~~~~~~WvtT 316 (735)
T KOG0308|consen 243 GQQRCLATYIVHKEGVWALQSSPSFTHVYS----GGRDGNIYRTDLRNPA-KSTLICKEDAP-VLKLHLHEHDNSVWVTT 316 (735)
T ss_pred cccceeeeEEeccCceEEEeeCCCcceEEe----cCCCCcEEecccCCch-hheEeecCCCc-hhhhhhccccCCceeee
Confidence 533333344445333556666666565552 2455688888888743 35555543332 1111111 23457777
Q ss_pred CCC
Q 003878 516 KDG 518 (789)
Q Consensus 516 ~dg 518 (789)
.|+
T Consensus 317 tds 319 (735)
T KOG0308|consen 317 TDS 319 (735)
T ss_pred ccc
Confidence 776
|
|
| >COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.054 Score=58.63 Aligned_cols=89 Identities=12% Similarity=0.098 Sum_probs=58.8
Q ss_pred HHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC
Q 003878 560 RTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR 639 (789)
Q Consensus 560 ~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~ 639 (789)
...++.++|.-|.+++.|+=.. +.+ .........+++..|++.+.+. +-.++|-+.|++.||.+...+++.+
T Consensus 131 ~V~~l~~~g~~vfvIsw~nPd~-~~~-----~~~~edYi~e~l~~aid~v~~i--tg~~~InliGyCvGGtl~~~ala~~ 202 (445)
T COG3243 131 LVRWLLEQGLDVFVISWRNPDA-SLA-----AKNLEDYILEGLSEAIDTVKDI--TGQKDINLIGYCVGGTLLAAALALM 202 (445)
T ss_pred HHHHHHHcCCceEEEeccCchH-hhh-----hccHHHHHHHHHHHHHHHHHHH--hCccccceeeEecchHHHHHHHHhh
Confidence 3456666999999999875321 111 1111112224455677777665 3447899999999999999988888
Q ss_pred CCc-eeEEEecCCccccc
Q 003878 640 PDL-FGCALAHVGVMDML 656 (789)
Q Consensus 640 pd~-f~a~v~~~p~~d~~ 656 (789)
+.. ++.+....-.+|+.
T Consensus 203 ~~k~I~S~T~lts~~DF~ 220 (445)
T COG3243 203 AAKRIKSLTLLTSPVDFS 220 (445)
T ss_pred hhcccccceeeecchhhc
Confidence 876 77777665555543
|
|
| >PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.062 Score=55.62 Aligned_cols=149 Identities=17% Similarity=0.090 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC------CCceeEEEecCCcccccccccccCCccchhhcCCC
Q 003878 601 DFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR------PDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCS 674 (789)
Q Consensus 601 D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~------pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p 674 (789)
=+..++.+|.++.-+ +++-++||||||+.+..++..+ |.+=+-+....||-....... .....-...-| |
T Consensus 88 wl~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~-~~~~~~~~~~g-p 163 (255)
T PF06028_consen 88 WLKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMND-DQNQNDLNKNG-P 163 (255)
T ss_dssp HHHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC--TTTT-CSTT--B
T ss_pred HHHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccc-cchhhhhcccC-C
Confidence 355677888877433 5999999999999999988874 444555555555544332221 10000012224 4
Q ss_pred -CcHHHHHHHHhc-CcccCCCCCCCCCCCCCCCCCeEEEEecC------CCCCCCcHHHHHHHHHHHHhhccCCCCCCCC
Q 003878 675 -EEEEEFYWLIKY-SPLHNVRRPWEQNPDKPFQYPSTLLLTAD------HDDRVVPLHSLKLLATMQYVLCTSLENSPQT 746 (789)
Q Consensus 675 -~~~~~~~~l~~~-sP~~~v~~~~~~~~~~~~~~pp~Li~~g~------~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~ 746 (789)
...+.|+.|.+. . .+..+ ...+|-+.|. .|.+||...++.+.-.++.. .
T Consensus 164 ~~~~~~y~~l~~~~~--~~~p~-----------~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~----------~ 220 (255)
T PF06028_consen 164 KSMTPMYQDLLKNRR--KNFPK-----------NIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNR----------A 220 (255)
T ss_dssp SS--HHHHHHHHTHG--GGSTT-----------T-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTT----------S
T ss_pred cccCHHHHHHHHHHH--hhCCC-----------CeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcc----------c
Confidence 233445555543 2 22222 4589999998 89999988877776666654 4
Q ss_pred CcEEEEEeCC--CCcCCCCchhhHHHHHHHHHHHH
Q 003878 747 NPIIGRIERK--AGHGVGLPTQKMIDEAADRYGFM 779 (789)
Q Consensus 747 ~~~~l~~~~~--~gH~~~~~~~~~~~~~~~~~~fl 779 (789)
....-.++.| +.|...-... +....+..||
T Consensus 221 ~~Y~e~~v~G~~a~HS~LheN~---~V~~~I~~FL 252 (255)
T PF06028_consen 221 KSYQEKTVTGKDAQHSQLHENP---QVDKLIIQFL 252 (255)
T ss_dssp SEEEEEEEESGGGSCCGGGCCH---HHHHHHHHHH
T ss_pred CceEEEEEECCCCccccCCCCH---HHHHHHHHHh
Confidence 4555555544 6787543323 3334556665
|
; PDB: 3LP5_A 3FLE_A 3DS8_A. |
| >PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.026 Score=59.24 Aligned_cols=111 Identities=13% Similarity=0.047 Sum_probs=70.6
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHc---CCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHH----HHHHH
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRH---LGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISA----SEYLI 610 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~---~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~----~~~L~ 610 (789)
.++++++-|.||. ..|...++..|.+ ..+.++.....|....... .........-+.+|.++- ++.++
T Consensus 2 ~~li~~IPGNPGl---v~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~--~~~~~~~~~~sL~~QI~hk~~~i~~~~ 76 (266)
T PF10230_consen 2 RPLIVFIPGNPGL---VEFYEEFLSALYEKLNPQFEILGISHAGHSTSPSN--SKFSPNGRLFSLQDQIEHKIDFIKELI 76 (266)
T ss_pred cEEEEEECCCCCh---HHHHHHHHHHHHHhCCCCCeeEEecCCCCcCCccc--ccccCCCCccCHHHHHHHHHHHHHHHh
Confidence 4789999887775 3444444444432 4788998888886543322 000012334455555553 33333
Q ss_pred HcCCCCCCcEEEEeeChHHHHHHHHHHhCC---CceeEEEecCCcc
Q 003878 611 SAGYTQSRKLCIEGGSNGGLLVGACINQRP---DLFGCALAHVGVM 653 (789)
Q Consensus 611 ~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p---d~f~a~v~~~p~~ 653 (789)
........++.++|||.|+++++.++.+.| ..+..++...|.+
T Consensus 77 ~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 77 PQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred hhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 322114468999999999999999999999 5677777777754
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.039 Score=60.50 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=27.2
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCcee
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE 171 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~ 171 (789)
.+..+.+||||++||.+.. . ..|+|+|-.+.+.+
T Consensus 292 ~in~f~FS~DG~~LA~VSq-D----GfLRvF~fdt~eLl 325 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQ-D----GFLRIFDFDTQELL 325 (636)
T ss_pred cccceeEcCCCceEEEEec-C----ceEEEeeccHHHHH
Confidence 4678899999999997654 3 47999999887554
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.77 Score=52.97 Aligned_cols=176 Identities=15% Similarity=0.080 Sum_probs=99.9
Q ss_pred CcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCc
Q 003878 272 NLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 351 (789)
Q Consensus 272 ~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 351 (789)
.++.+|++|++.++. .+.+..... ..+..+.. ++..++..+.++ .|-++++.++ ..
T Consensus 308 s~D~tVkVW~v~n~~--~l~l~~~h~--~~V~~v~~--~~~~lvsgs~d~-----~v~VW~~~~~-------------~c 363 (537)
T KOG0274|consen 308 SRDNTVKVWDVTNGA--CLNLLRGHT--GPVNCVQL--DEPLLVSGSYDG-----TVKVWDPRTG-------------KC 363 (537)
T ss_pred cCCceEEEEeccCcc--eEEEecccc--ccEEEEEe--cCCEEEEEecCc-----eEEEEEhhhc-------------ee
Confidence 356779999987543 344444322 23334444 477777666542 4777787763 22
Q ss_pred cEeeeccccceeEEEecCC-CEEEEEECCCCCCceEEEEECCCC-CCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCe
Q 003878 352 FVKLIDGFDAQYEVIANDD-TVFTFLTNKDAPKYKIIRVDLKEP-NDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVK 429 (789)
Q Consensus 352 ~~~l~~~~~~~~~~~s~dG-~~l~~~tn~~~~~~~L~~~dl~~~-~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~ 429 (789)
+..+.......+.. ..++ .+++ . +.-+..|..+|+.++ +-...+ .+. ...+..+... +.++++...++
T Consensus 364 l~sl~gH~~~V~sl-~~~~~~~~~-S---gs~D~~IkvWdl~~~~~c~~tl-~~h-~~~v~~l~~~--~~~Lvs~~aD~- 433 (537)
T KOG0274|consen 364 LKSLSGHTGRVYSL-IVDSENRLL-S---GSLDTTIKVWDLRTKRKCIHTL-QGH-TSLVSSLLLR--DNFLVSSSADG- 433 (537)
T ss_pred eeeecCCcceEEEE-EecCcceEE-e---eeeccceEeecCCchhhhhhhh-cCC-cccccccccc--cceeEeccccc-
Confidence 33343333323332 2344 4444 2 223467999999887 412222 221 2333444433 46666776666
Q ss_pred EEEEEEECCCCceeeecccC-CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCc
Q 003878 430 YVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETP 488 (789)
Q Consensus 430 ~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~ 488 (789)
.|.+||..+++.++.+..+ .+.+..+... +..++.. ...+.+..+|+.+++.
T Consensus 434 -~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s---~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 434 -TIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCS---SDDGSVKLWDLRSGTL 486 (537)
T ss_pred -cEEEeecccCceeeeeccCCcccEEEeecC---cceEEEE---ecCCeeEEEecccCch
Confidence 7999999988887777763 4666666543 2333332 3467888889988863
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.27 Score=58.40 Aligned_cols=86 Identities=12% Similarity=0.065 Sum_probs=52.6
Q ss_pred cceEEEEeCCcEEEE-EEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 237 FSSIAWTHDSKGFFY-SRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 237 ~~~~~wspDg~~i~y-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
..+++|||||+.|+| +.... ..+...||+++|.+.....+.+--+ ...+..-.+.+.|..++
T Consensus 352 i~sP~~SPDG~~vAY~ts~e~--------------~~g~s~vYv~~L~t~~~~~vkl~ve---~aaiprwrv~e~gdt~i 414 (912)
T TIGR02171 352 VYHPDISPDGKKVAFCTGIEG--------------LPGKSSVYVRNLNASGSGLVKLPVE---NAAIPRWRVLENGDTVI 414 (912)
T ss_pred eecCcCCCCCCEEEEEEeecC--------------CCCCceEEEEehhccCCCceEeecc---cccccceEecCCCCeEE
Confidence 467999999999999 53321 1244569999999876654333111 11233345678888877
Q ss_pred EEEEcCCCC-------ceEEEEEECCCCCCC
Q 003878 316 MCIEENCDP-------VNKVYYCDLSALPEG 339 (789)
Q Consensus 316 ~~~~~~~~~-------~~~i~~~d~~~g~~~ 339 (789)
+...+.... ...-|.+..+.|+.+
T Consensus 415 vyv~~a~nn~d~~~~~~~stw~v~f~~gkfg 445 (912)
T TIGR02171 415 VYVSDASNNKDDATFAAYSTWQVPFANGKFG 445 (912)
T ss_pred EEEcCCCCCcchhhhhhcceEEEEecCCCCC
Confidence 665443211 123577777777543
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.15 Score=55.90 Aligned_cols=185 Identities=10% Similarity=0.125 Sum_probs=100.4
Q ss_pred Eeeeccccceeeeeeec---------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC
Q 003878 217 LFSLVKSTIYSFWSVVS---------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS 287 (789)
Q Consensus 217 ~~~s~~~g~~~l~~~~~---------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~ 287 (789)
+.++..+|.+.|-.-.. .-...+-.|+|||..|+-.. ..-.|..|....-..
T Consensus 78 ~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~G-------------------EDG~iKiWSrsGMLR 138 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAG-------------------EDGVIKIWSRSGMLR 138 (737)
T ss_pred EEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeec-------------------CCceEEEEeccchHH
Confidence 44555566665543222 11124568999998887542 222355554322111
Q ss_pred CcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEE
Q 003878 288 EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVI 366 (789)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 366 (789)
. +++ +. ...+..++|.|+...++|... .++++-++.... +...|+.. + +... ..|
T Consensus 139 S-tl~-Q~---~~~v~c~~W~p~S~~vl~c~g------~h~~IKpL~~n~----------k~i~WkAH-D--GiiL~~~W 194 (737)
T KOG1524|consen 139 S-TVV-QN---EESIRCARWAPNSNSIVFCQG------GHISIKPLAANS----------KIIRWRAH-D--GLVLSLSW 194 (737)
T ss_pred H-HHh-hc---CceeEEEEECCCCCceEEecC------CeEEEeeccccc----------ceeEEecc-C--cEEEEeec
Confidence 1 111 11 112457899999999999863 347777776421 11122211 1 1112 237
Q ss_pred ecCCCEEEEEECCCCCCceEEEEECCCCCCeEEecc-CCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeee
Q 003878 367 ANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP-EAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQ 445 (789)
Q Consensus 367 s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~-~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~ 445 (789)
++..+.++ .++.+++.-.+|.-+. .|+. ..++..|.+++|.+ +.+++..+-+. ++
T Consensus 195 ~~~s~lI~----sgGED~kfKvWD~~G~----~Lf~S~~~ey~ITSva~np-d~~~~v~S~nt---~R------------ 250 (737)
T KOG1524|consen 195 STQSNIIA----SGGEDFRFKIWDAQGA----NLFTSAAEEYAITSVAFNP-EKDYLLWSYNT---AR------------ 250 (737)
T ss_pred Ccccccee----ecCCceeEEeecccCc----ccccCChhccceeeeeecc-ccceeeeeeee---ee------------
Confidence 77555433 2345677777886543 2332 22346799999999 57776555432 22
Q ss_pred cccC-CeeEEEeecccCCcEEEEE
Q 003878 446 LPIE-IGSVNAISARREDSVVFIS 468 (789)
Q Consensus 446 l~~~-~~~v~~~s~s~d~~~l~~~ 468 (789)
+..| .|++..++||+||.++...
T Consensus 251 ~~~p~~GSifnlsWS~DGTQ~a~g 274 (737)
T KOG1524|consen 251 FSSPRVGSIFNLSWSADGTQATCG 274 (737)
T ss_pred ecCCCccceEEEEEcCCCceeecc
Confidence 3333 5677788888888777654
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.54 Score=49.55 Aligned_cols=114 Identities=12% Similarity=0.074 Sum_probs=68.0
Q ss_pred ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 236 ~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
.+.++.|.+||..+.-... ....|.+|+..+++... ++... ...+.-+.|||||.+++
T Consensus 197 pVtsmqwn~dgt~l~tAS~------------------gsssi~iWdpdtg~~~p-L~~~g---lgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 197 PVTSMQWNEDGTILVTASF------------------GSSSIMIWDPDTGQKIP-LIPKG---LGGFSLLKWSPDGDVLF 254 (445)
T ss_pred eeeEEEEcCCCCEEeeccc------------------CcceEEEEcCCCCCccc-ccccC---CCceeeEEEcCCCCEEE
Confidence 3589999999988875433 33458889988876543 33222 22244578999999998
Q ss_pred EEEEcCCCCceEEE-EEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECC
Q 003878 316 MCIEENCDPVNKVY-YCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLK 392 (789)
Q Consensus 316 ~~~~~~~~~~~~i~-~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~ 392 (789)
..+-+. ...+| .-..-+ ..++.. ..+ ......|+|+|+.|.|..... ..||.+...
T Consensus 255 aAt~da---vfrlw~e~q~wt-------------~erw~l-gsg-rvqtacWspcGsfLLf~~sgs---p~lysl~f~ 311 (445)
T KOG2139|consen 255 AATCDA---VFRLWQENQSWT-------------KERWIL-GSG-RVQTACWSPCGSFLLFACSGS---PRLYSLTFD 311 (445)
T ss_pred Eecccc---eeeeehhcccce-------------ecceec-cCC-ceeeeeecCCCCEEEEEEcCC---ceEEEEeec
Confidence 766433 23344 111111 011211 112 223356999999999877542 467776554
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.42 Score=51.04 Aligned_cols=15 Identities=20% Similarity=0.552 Sum_probs=14.0
Q ss_pred ceEEEEeCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYS 252 (789)
Q Consensus 238 ~~~~wspDg~~i~y~ 252 (789)
.+++|||||+.+|++
T Consensus 166 NGla~SpDg~tly~a 180 (307)
T COG3386 166 NGLAFSPDGKTLYVA 180 (307)
T ss_pred CceEECCCCCEEEEE
Confidence 789999999999987
|
|
| >PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.04 Score=56.18 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=32.6
Q ss_pred HHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhCC---CceeEEEe
Q 003878 602 FISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQRP---DLFGCALA 648 (789)
Q Consensus 602 ~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~p---d~f~a~v~ 648 (789)
+..+++.+.+. ....+.+|.++||||||+++-.++...+ +.++.+|.
T Consensus 66 ~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iit 118 (225)
T PF07819_consen 66 LAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIIT 118 (225)
T ss_pred HHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEE
Confidence 34456665544 2467889999999999999888776643 34555554
|
This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane |
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.15 Score=54.28 Aligned_cols=94 Identities=12% Similarity=0.076 Sum_probs=60.2
Q ss_pred EecCCCEEEEEECCCCCCceEEEEECCCCCCeEEec-cCCC--CceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce
Q 003878 366 IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVI-PEAE--RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 366 ~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~-~~~~--~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
.+++|..+...+ .+..|-++|+.+.+ .+..+ .+.- ......+.+++++..++.++.+| .|++|+..+|+.
T Consensus 349 ls~~g~~lLsss----RDdtl~viDlRt~e-I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg--sv~iW~v~tgKl 421 (459)
T KOG0288|consen 349 LSMDGLELLSSS----RDDTLKVIDLRTKE-IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG--SVYIWSVFTGKL 421 (459)
T ss_pred eccCCeEEeeec----CCCceeeeeccccc-EEEEeeccccccccccceeEECCCCceeeeccCCC--cEEEEEccCceE
Confidence 677887766442 23457777887765 22222 2211 11234567788778888888887 799999998987
Q ss_pred eeecccC--CeeEEEeecccCCcEEE
Q 003878 443 LHQLPIE--IGSVNAISARREDSVVF 466 (789)
Q Consensus 443 ~~~l~~~--~~~v~~~s~s~d~~~l~ 466 (789)
...+..+ ...|..++|++.|..++
T Consensus 422 E~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 422 EKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred EEEeccCCCCcceEEEEEcCCCchhh
Confidence 6666655 22477788887776544
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.089 Score=54.68 Aligned_cols=142 Identities=13% Similarity=0.093 Sum_probs=72.9
Q ss_pred CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEE
Q 003878 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRV 389 (789)
Q Consensus 310 DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~ 389 (789)
|.++|+-.+. ...|.+++..++. +.+...+.....+... ..++|++.. ..+..|-.+
T Consensus 329 d~kyIVsASg-----DRTikvW~~st~e--------------fvRtl~gHkRGIAClQ-Yr~rlvVSG---SSDntIRlw 385 (499)
T KOG0281|consen 329 DDKYIVSASG-----DRTIKVWSTSTCE--------------FVRTLNGHKRGIACLQ-YRDRLVVSG---SSDNTIRLW 385 (499)
T ss_pred ccceEEEecC-----CceEEEEecccee--------------eehhhhcccccceehh-ccCeEEEec---CCCceEEEE
Confidence 6677654432 2447788887753 2222222221222211 233455432 334678889
Q ss_pred ECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc---------CCeeEEEeeccc
Q 003878 390 DLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI---------EIGSVNAISARR 460 (789)
Q Consensus 390 dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~---------~~~~v~~~s~s~ 460 (789)
|+..|.-.+.|-.+. ..+.-+.+. +.-++++--+| .|.+||+.++...+.... ..|.|..+.+
T Consensus 386 di~~G~cLRvLeGHE--eLvRciRFd--~krIVSGaYDG--kikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF-- 457 (499)
T KOG0281|consen 386 DIECGACLRVLEGHE--ELVRCIRFD--NKRIVSGAYDG--KIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF-- 457 (499)
T ss_pred eccccHHHHHHhchH--Hhhhheeec--Cceeeeccccc--eEEEEecccccCCcccccchHHHhhhhccceeEEEee--
Confidence 998886333332222 445556654 34455565666 789999987754332211 1334434443
Q ss_pred CCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 461 EDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 461 d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
|.-+++ +-+.-.++..||...+
T Consensus 458 D~fqIv----sssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 458 DEFQII----SSSHDDTILIWDFLNG 479 (499)
T ss_pred cceEEE----eccCCCeEEEEEcCCC
Confidence 332222 2245567888887666
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.55 Score=49.58 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=76.0
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..+..+++++.+.||||-.+.. ..+|+|||+.+-+.+. .|.-. .|
T Consensus 130 ~gl~AlS~n~~n~ylAyp~s~t---~GdV~l~d~~nl~~v~-~I~aH-------~~------------------------ 174 (391)
T KOG2110|consen 130 KGLCALSPNNANCYLAYPGSTT---SGDVVLFDTINLQPVN-TINAH-------KG------------------------ 174 (391)
T ss_pred cceEeeccCCCCceEEecCCCC---CceEEEEEcccceeee-EEEec-------CC------------------------
Confidence 4567788888999999975543 4689999988764332 22211 11
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
....++++|||..|+-. +....-|+++.+..++ ...
T Consensus 175 ------------------------~lAalafs~~G~llATA------------------SeKGTVIRVf~v~~G~--kl~ 210 (391)
T KOG2110|consen 175 ------------------------PLAALAFSPDGTLLATA------------------SEKGTVIRVFSVPEGQ--KLY 210 (391)
T ss_pred ------------------------ceeEEEECCCCCEEEEe------------------ccCceEEEEEEcCCcc--Eee
Confidence 25788999999999854 2333446666664432 222
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCC
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 335 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~ 335 (789)
-|...-.+..+.+++||||+++|..+++. ..|+++-+++
T Consensus 211 eFRRG~~~~~IySL~Fs~ds~~L~~sS~T-----eTVHiFKL~~ 249 (391)
T KOG2110|consen 211 EFRRGTYPVSIYSLSFSPDSQFLAASSNT-----ETVHIFKLEK 249 (391)
T ss_pred eeeCCceeeEEEEEEECCCCCeEEEecCC-----CeEEEEEecc
Confidence 23333334557789999999999876642 3366665554
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.4 Score=51.62 Aligned_cols=215 Identities=13% Similarity=0.158 Sum_probs=113.7
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+...+.++.+.|++-..+ +|++.+.|+||+.++.+.+- ++.+. +-|+
T Consensus 50 HdGpVRgv~FH~~qplFV-----SGGDDykIkVWnYk~rrclf-tL~GH--------------------------lDYV- 96 (1202)
T KOG0292|consen 50 HDGPVRGVDFHPTQPLFV-----SGGDDYKIKVWNYKTRRCLF-TLLGH--------------------------LDYV- 96 (1202)
T ss_pred cCCccceeeecCCCCeEE-----ecCCccEEEEEecccceehh-hhccc--------------------------ccee-
Confidence 334578999999998765 68889999999999886553 22221 1122
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
....|.|.=-+|+-. ...++|++|+..+...
T Consensus 97 ----------------------------Rt~~FHheyPWIlSA-------------------SDDQTIrIWNwqsr~~-- 127 (1202)
T KOG0292|consen 97 ----------------------------RTVFFHHEYPWILSA-------------------SDDQTIRIWNWQSRKC-- 127 (1202)
T ss_pred ----------------------------EEeeccCCCceEEEc-------------------cCCCeEEEEeccCCce--
Confidence 233344333344422 1234577777765432
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccc-------cc--------cCCCCccEe
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF-------KK--------RDGLLPFVK 354 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-------~~--------~~~~~~~~~ 354 (789)
+.+..+ +..|+.-.+|.|....++-.+- ...|.++|+.+...+.... .- ++.....+.
T Consensus 128 iavltG--HnHYVMcAqFhptEDlIVSaSL-----DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~ 200 (1202)
T KOG0292|consen 128 IAVLTG--HNHYVMCAQFHPTEDLIVSASL-----DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH 200 (1202)
T ss_pred EEEEec--CceEEEeeccCCccceEEEecc-----cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee
Confidence 333333 4457777888887776654432 3457888876532110000 00 000001111
Q ss_pred eecccc--ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEE
Q 003878 355 LIDGFD--AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVL 432 (789)
Q Consensus 355 l~~~~~--~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L 432 (789)
+..+.+ ..+..|.|. .=+|++..+....+|++++-. +.|+.=+--+.-..+.++-+.+...++++..+|. .|
T Consensus 201 VLEGHDRGVNwaAfhpT--lpliVSG~DDRqVKlWrmnet--KaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDk--si 274 (1202)
T KOG0292|consen 201 VLEGHDRGVNWAAFHPT--LPLIVSGADDRQVKLWRMNET--KAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDK--SI 274 (1202)
T ss_pred eecccccccceEEecCC--cceEEecCCcceeeEEEeccc--cceeehhhhcccCCcceEEecCccceeEecCCCc--cE
Confidence 122222 123334332 112333333234566666532 2365333333235677888877556888888886 67
Q ss_pred EEEECCC
Q 003878 433 QIRDLKN 439 (789)
Q Consensus 433 ~~~dl~t 439 (789)
++||.+.
T Consensus 275 rVwDm~k 281 (1202)
T KOG0292|consen 275 RVWDMTK 281 (1202)
T ss_pred EEEeccc
Confidence 8888863
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.046 Score=57.48 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=79.4
Q ss_pred CCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeee
Q 003878 115 AKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTI 194 (789)
Q Consensus 115 ~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (789)
+.|+ +|...+.. ++.+|..++|||..+-+.++.+-.| .|+|||+.++...+-..... |.+ ++
T Consensus 244 g~W~--vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~Dg----sIrIWDiRs~~~~~~~~~kA------h~s-----DV 305 (440)
T KOG0302|consen 244 GSWK--VDQRPFTG-HTKSVEDLQWSPTEDGVFASCSCDG----SIRIWDIRSGPKKAAVSTKA------HNS-----DV 305 (440)
T ss_pred Ccee--ecCccccc-cccchhhhccCCccCceEEeeecCc----eEEEEEecCCCccceeEeec------cCC-----ce
Confidence 5554 36655543 6678889999999999988777666 69999999984332111111 000 23
Q ss_pred ccccccccccccccccceeeEEEeeeccccceeeeeeec-------------ccccceEEEEeCCcEEEEEEccCCCCCC
Q 003878 195 SLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVS-------------QFKFSSIAWTHDSKGFFYSRYPAPKEGK 261 (789)
Q Consensus 195 ~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~-------------~~~~~~~~wspDg~~i~y~~~~~~~~~~ 261 (789)
|.+.+-.. . .+|.+.+.+|+..||.+-. .....++.|+|....++-.
T Consensus 306 NVISWnr~--------~---~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaa--------- 365 (440)
T KOG0302|consen 306 NVISWNRR--------E---PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAA--------- 365 (440)
T ss_pred eeEEccCC--------c---ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEe---------
Confidence 33332222 1 3788999999999998755 2224788999866665544
Q ss_pred CCCCCccccCCcccEEEEEECCCC
Q 003878 262 DMDAGTETDSNLYHEFYYHFLGTK 285 (789)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~lg~~ 285 (789)
++...+|-+|+|...
T Consensus 366 ---------sg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 366 ---------SGEDNQITIWDLSVE 380 (440)
T ss_pred ---------ccCCCcEEEEEeecc
Confidence 334456778887653
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.25 Score=53.78 Aligned_cols=117 Identities=16% Similarity=0.193 Sum_probs=85.4
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.+.-+.+||--+.|.-..+..| .+.+||+.+....--..+. |++
T Consensus 166 svRll~ys~skr~lL~~asd~G----~VtlwDv~g~sp~~~~~~~------HsA-------------------------- 209 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDKG----AVTLWDVQGMSPIFHASEA------HSA-------------------------- 209 (673)
T ss_pred eEEEeecccccceeeEeeccCC----eEEEEeccCCCcccchhhh------ccC--------------------------
Confidence 3556788999888887666555 7899999876443211110 110
Q ss_pred eeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 292 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~ 292 (789)
...+++|||-...|+++ .+...+|+.++++.....+.++
T Consensus 210 -----------------------P~~gicfspsne~l~vs------------------VG~Dkki~~yD~~s~~s~~~l~ 248 (673)
T KOG4378|consen 210 -----------------------PCRGICFSPSNEALLVS------------------VGYDKKINIYDIRSQASTDRLT 248 (673)
T ss_pred -----------------------CcCcceecCCccceEEE------------------ecccceEEEeecccccccceee
Confidence 23689999988888876 4566789999999888888888
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCC
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 336 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g 336 (789)
|+.| +..++++++|-+|++... ..+|+.+|+...
T Consensus 249 y~~P-----lstvaf~~~G~~L~aG~s-----~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 249 YSHP-----LSTVAFSECGTYLCAGNS-----KGELIAYDMRST 282 (673)
T ss_pred ecCC-----cceeeecCCceEEEeecC-----CceEEEEecccC
Confidence 8765 347899999999988764 356999999874
|
|
| >PLN02733 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.014 Score=65.19 Aligned_cols=87 Identities=20% Similarity=0.207 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHH
Q 003878 555 SFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGA 634 (789)
Q Consensus 555 ~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~ 634 (789)
.|... ...|.+.||.+ ..|.+|. |.+|+... .....++++.+.++.+.+.. ...++.++||||||+++..
T Consensus 109 ~~~~l-i~~L~~~GY~~-~~dL~g~---gYDwR~~~---~~~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~~ 178 (440)
T PLN02733 109 YFHDM-IEQLIKWGYKE-GKTLFGF---GYDFRQSN---RLPETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVKC 178 (440)
T ss_pred HHHHH-HHHHHHcCCcc-CCCcccC---CCCccccc---cHHHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHHH
Confidence 44443 45566699876 5688874 45565431 11234677777777776542 2358999999999999999
Q ss_pred HHHhCCCc----eeEEEecCC
Q 003878 635 CINQRPDL----FGCALAHVG 651 (789)
Q Consensus 635 ~~~~~pd~----f~a~v~~~p 651 (789)
.+.++|+. ++..|+.++
T Consensus 179 fl~~~p~~~~k~I~~~I~la~ 199 (440)
T PLN02733 179 FMSLHSDVFEKYVNSWIAIAA 199 (440)
T ss_pred HHHHCCHhHHhHhccEEEECC
Confidence 99888874 455555544
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.77 Score=47.82 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=48.4
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCC-CCeeEEEEEEecCCcEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE-HPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~-~~~~~~~~~~SpDG~~l~ 315 (789)
...+.+.|+.-.++.+.. ..+.|++|++.+.. =+.|+.+-+ +...+.++.||+||.+|+
T Consensus 138 INeik~~p~~~qlvls~S------------------kD~svRlwnI~~~~--Cv~VfGG~egHrdeVLSvD~~~~gd~i~ 197 (385)
T KOG1034|consen 138 INEIKFHPDRPQLVLSAS------------------KDHSVRLWNIQTDV--CVAVFGGVEGHRDEVLSVDFSLDGDRIA 197 (385)
T ss_pred chhhhcCCCCCcEEEEec------------------CCceEEEEeccCCe--EEEEecccccccCcEEEEEEcCCCCeee
Confidence 467788898888887732 34569999997653 255665543 344578999999999887
Q ss_pred EEEEcCCCCceEEEEEE
Q 003878 316 MCIEENCDPVNKVYYCD 332 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d 332 (789)
-...+. +-.+|.++
T Consensus 198 ScGmDh---slk~W~l~ 211 (385)
T KOG1034|consen 198 SCGMDH---SLKLWRLN 211 (385)
T ss_pred ccCCcc---eEEEEecC
Confidence 544332 33445444
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=2.7 Score=43.22 Aligned_cols=214 Identities=14% Similarity=0.064 Sum_probs=108.8
Q ss_pred ceEEEEeCC-cEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 238 SSIAWTHDS-KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 238 ~~~~wspDg-~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
.+++++|-. +.++|.|.+.. -.++++..+.+. .+++.. .....++....+||||++|+.
T Consensus 71 Hgi~~~p~~~ravafARrPGt------------------f~~vfD~~~~~~-pv~~~s-~~~RHfyGHGvfs~dG~~LYA 130 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGT------------------FAMVFDPNGAQE-PVTLVS-QEGRHFYGHGVFSPDGRLLYA 130 (366)
T ss_pred CCeecCCCCcceEEEEecCCc------------------eEEEECCCCCcC-cEEEec-ccCceeecccccCCCCcEEEe
Confidence 456666643 55777765431 145556554433 233332 333455556789999999987
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-ccccceeEEEecCCCEEEEEEC--C------------CC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-DGFDAQYEVIANDDTVFTFLTN--K------------DA 381 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~s~dG~~l~~~tn--~------------~~ 381 (789)
+-++-+....-|=++|...+- +..-... -+.......|.+||+.+++... + +.
T Consensus 131 TEndfd~~rGViGvYd~r~~f------------qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNlds 198 (366)
T COG3490 131 TENDFDPNRGVIGVYDAREGF------------QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDS 198 (366)
T ss_pred ecCCCCCCCceEEEEeccccc------------ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhh
Confidence 765544334556667765421 0000110 1122222358899998876532 0 11
Q ss_pred CCceEEEEECCCCCCe-EEeccCC-CCceeeeEEEecCCEEEEEEEeCCe----EEEEEEECCCCceeeecccCCe----
Q 003878 382 PKYKIIRVDLKEPNDW-FEVIPEA-ERDVLESATAVNLNQMIVSYLSDVK----YVLQIRDLKNGSLLHQLPIEIG---- 451 (789)
Q Consensus 382 ~~~~L~~~dl~~~~~~-~~l~~~~-~~~~i~~v~~~~~~~lv~~~~~~g~----~~L~~~dl~tG~~~~~l~~~~~---- 451 (789)
-.-.|..+|..+++-+ +..+|.. ..-++..+...+++.+++...-.|. +-|.-.-.. |+..+.+..|..
T Consensus 199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~-g~~l~~~~~pee~~~~ 277 (366)
T COG3490 199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRK-GEPLEFLDLPEEQTAA 277 (366)
T ss_pred cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccC-CCcCcccCCCHHHHHH
Confidence 1235666665555411 2233422 1234566777666777766544432 223322223 555455555411
Q ss_pred ---eEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 452 ---SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 452 ---~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.+.+++...+...+.+ +|+ .-+....||.+||.
T Consensus 278 ~anYigsiA~n~~~glV~l--TSP-~GN~~vi~da~tG~ 313 (366)
T COG3490 278 FANYIGSIAANRRDGLVAL--TSP-RGNRAVIWDAATGA 313 (366)
T ss_pred HHhhhhheeecccCCeEEE--ecC-CCCeEEEEEcCCCc
Confidence 2334444444443333 343 33577889999994
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=95.79 E-value=1 Score=46.39 Aligned_cols=201 Identities=13% Similarity=0.122 Sum_probs=97.7
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
.++++|.||+++|+.+.. .+..|+..++.... -...-+.. .....++++.-+|++++
T Consensus 24 ~SGLTy~pd~~tLfaV~d------------------~~~~i~els~~G~v-lr~i~l~g---~~D~EgI~y~g~~~~vl- 80 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQD------------------EPGEIYELSLDGKV-LRRIPLDG---FGDYEGITYLGNGRYVL- 80 (248)
T ss_dssp EEEEEEETTTTEEEEEET------------------TTTEEEEEETT--E-EEEEE-SS----SSEEEEEE-STTEEEE-
T ss_pred ccccEEcCCCCeEEEEEC------------------CCCEEEEEcCCCCE-EEEEeCCC---CCCceeEEEECCCEEEE-
Confidence 489999999999987743 23456666653221 11111222 12245788887886665
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc------cceeEEEecCCCEEEEEECCCCCCceEEEEE
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF------DAQYEVIANDDTVFTFLTNKDAPKYKIIRVD 390 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~d 390 (789)
.. ++ ...++++++........ ......+.-+. +.+--.|.+.+++|++...+. + ..|+.++
T Consensus 81 ~~-Er---~~~L~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~-P-~~l~~~~ 147 (248)
T PF06977_consen 81 SE-ER---DQRLYIFTIDDDTTSLD-------RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK-P-KRLYEVN 147 (248)
T ss_dssp EE-TT---TTEEEEEEE----TT---------EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESS-S-EEEEEEE
T ss_pred EE-cC---CCcEEEEEEeccccccc-------hhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCC-C-hhhEEEc
Confidence 33 22 35688877744211100 00011111111 112235889889999876553 3 5688888
Q ss_pred C--CCCC-CeEE---ec-cCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceeeecccCC---------eeE
Q 003878 391 L--KEPN-DWFE---VI-PEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEI---------GSV 453 (789)
Q Consensus 391 l--~~~~-~~~~---l~-~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~---------~~v 453 (789)
. .... .... +. ....-..++++++.+ .+++++.+.+.. .|..+|.+ |+.+..+.+.. ...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~--~l~~~d~~-G~~~~~~~L~~g~~gl~~~~~Qp 224 (248)
T PF06977_consen 148 GFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESR--LLLELDRQ-GRVVSSLSLDRGFHGLSKDIPQP 224 (248)
T ss_dssp STT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTT--EEEEE-TT---EEEEEE-STTGGG-SS---SE
T ss_pred cccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCC--eEEEECCC-CCEEEEEEeCCcccCcccccCCc
Confidence 6 2211 0000 00 011113356777776 367887655543 77888865 77655444432 245
Q ss_pred EEeecccCCcEEEEEEcCCCCCcEEEEE
Q 003878 454 NAISARREDSVVFISFTSFLIPGIVYQC 481 (789)
Q Consensus 454 ~~~s~s~d~~~l~~~~ss~~~P~~ly~~ 481 (789)
.+++++++|+ ++++ ..|...|++
T Consensus 225 EGIa~d~~G~-LYIv----sEpNlfy~f 247 (248)
T PF06977_consen 225 EGIAFDPDGN-LYIV----SEPNLFYRF 247 (248)
T ss_dssp EEEEE-TT---EEEE----ETTTEEEEE
T ss_pred cEEEECCCCC-EEEE----cCCceEEEe
Confidence 6788888875 5554 258888775
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.6 Score=49.32 Aligned_cols=155 Identities=10% Similarity=0.134 Sum_probs=92.1
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecC--CCEEEEEECC
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND--DTVFTFLTNK 379 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~d--G~~l~~~tn~ 379 (789)
+.++.. +.++|++... ..||++|+.+-+ .++ -......-......+|++ +.++++-...
T Consensus 90 IL~Vrm--Nr~RLvV~Le------e~IyIydI~~Mk----lLh-------TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~ 150 (391)
T KOG2110|consen 90 ILAVRM--NRKRLVVCLE------ESIYIYDIKDMK----LLH-------TIETTPPNPKGLCALSPNNANCYLAYPGST 150 (391)
T ss_pred eEEEEE--ccceEEEEEc------ccEEEEecccce----eeh-------hhhccCCCccceEeeccCCCCceEEecCCC
Confidence 445554 4566666652 349999998721 100 000110011123345554 3466654333
Q ss_pred CCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC--CeeEEEee
Q 003878 380 DAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAIS 457 (789)
Q Consensus 380 ~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~--~~~v~~~s 457 (789)
..+.|+++|+.+-.....+-.|. ..+..+++++++.+++..++.| .-|+++...+|+...++--+ ...+.+++
T Consensus 151 --t~GdV~l~d~~nl~~v~~I~aH~--~~lAalafs~~G~llATASeKG-TVIRVf~v~~G~kl~eFRRG~~~~~IySL~ 225 (391)
T KOG2110|consen 151 --TSGDVVLFDTINLQPVNTINAHK--GPLAALAFSPDGTLLATASEKG-TVIRVFSVPEGQKLYEFRRGTYPVSIYSLS 225 (391)
T ss_pred --CCceEEEEEcccceeeeEEEecC--CceeEEEECCCCCEEEEeccCc-eEEEEEEcCCccEeeeeeCCceeeEEEEEE
Confidence 46889999987755233333444 6788899998889999999998 46888888888765544322 33566788
Q ss_pred cccCCcEEEEEEcCCCCCcEEEEEE
Q 003878 458 ARREDSVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 458 ~s~d~~~l~~~~ss~~~P~~ly~~d 482 (789)
+++|+..+.. +|-+.--.++.++
T Consensus 226 Fs~ds~~L~~--sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 226 FSPDSQFLAA--SSNTETVHIFKLE 248 (391)
T ss_pred ECCCCCeEEE--ecCCCeEEEEEec
Confidence 9999985544 3434434444444
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.017 Score=40.84 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=21.1
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEE
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKL 162 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v 162 (789)
-..+.|||||++|+|+.+..+....+||+
T Consensus 11 ~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred ccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 36788999999999999987333566764
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.38 Score=55.27 Aligned_cols=151 Identities=9% Similarity=0.121 Sum_probs=79.3
Q ss_pred EEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCC
Q 003878 304 SGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPK 383 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~ 383 (789)
.++++|||+++++++.+... ...+..++..+. ...-.+. .. ....+.++|+..++ + .
T Consensus 239 ~v~~spdGk~afvTsyNsE~-G~tl~em~a~e~--------------d~~vvfn-i~-~iea~vkdGK~~~V--~----g 295 (635)
T PRK02888 239 NVDTDYDGKYAFSTCYNSEE-GVTLAEMMAAER--------------DWVVVFN-IA-RIEEAVKAGKFKTI--G----G 295 (635)
T ss_pred cceECCCCCEEEEeccCccc-CcceeeeccccC--------------ceEEEEc-hH-HHHHhhhCCCEEEE--C----C
Confidence 57899999999998753321 234555554331 0111111 11 01124568887775 1 2
Q ss_pred ceEEEEECCC----CCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce------------eeecc
Q 003878 384 YKIIRVDLKE----PNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL------------LHQLP 447 (789)
Q Consensus 384 ~~L~~~dl~~----~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~------------~~~l~ 447 (789)
.+|.++|..+ +......+|-. ..-.++.+++|++.++... ...+.+.++|+++-+. ..++.
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vSPDGkylyVan-klS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTSPDGKYFIANG-KLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECC--CCccceEECCCCCEEEEeC-CCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 5788899877 22233334433 2235677888544333222 2335788889875331 12233
Q ss_pred cCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCC
Q 003878 448 IEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 485 (789)
Q Consensus 448 ~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~t 485 (789)
...+-+ ...++.++. .|.|.-.-+.+..||+++
T Consensus 373 vGlGPL-HTaFDg~G~----aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 LGLGPL-HTAFDGRGN----AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCCcc-eEEECCCCC----EEEeEeecceeEEEehHH
Confidence 322222 234555554 233455566888999865
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.5 Score=49.01 Aligned_cols=111 Identities=10% Similarity=0.082 Sum_probs=65.1
Q ss_pred EEecCCCEEEEEECCCCCCceEEEEECCCCC---CeEEeccCCC---CceeeeEEEecC-CEEEEEEEeCCeEEEEEEEC
Q 003878 365 VIANDDTVFTFLTNKDAPKYKIIRVDLKEPN---DWFEVIPEAE---RDVLESATAVNL-NQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~---~~~~l~~~~~---~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl 437 (789)
.|+|||..|+. +.+..|..+|+..+. .....+...+ ...+.-+++++- ..+++...-.. ++-++.-
T Consensus 165 ~Fs~DGeqlfa-----GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q--~~giy~~ 237 (406)
T KOG2919|consen 165 QFSPDGEQLFA-----GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ--RVGIYND 237 (406)
T ss_pred EecCCCCeEee-----cccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccc--eeeeEec
Confidence 48999999883 345567777875443 1112222211 234555666663 33444333332 3333343
Q ss_pred CCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCC
Q 003878 438 KNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 485 (789)
Q Consensus 438 ~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~t 485 (789)
..+..+..+-...+.|..+.+-+||++++ ++...-..|..||+..
T Consensus 238 ~~~~pl~llggh~gGvThL~~~edGn~lf---sGaRk~dkIl~WDiR~ 282 (406)
T KOG2919|consen 238 DGRRPLQLLGGHGGGVTHLQWCEDGNKLF---SGARKDDKILCWDIRY 282 (406)
T ss_pred CCCCceeeecccCCCeeeEEeccCcCeec---ccccCCCeEEEEeehh
Confidence 33444444443477888899999999765 5667788999999853
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.044 Score=63.02 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=51.6
Q ss_pred ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 236 ~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
+...++||||||+|+....+ ..|+.|++.++.--|.+..+.+ ..++.+||.|.+|+
T Consensus 578 ritd~~FS~DgrWlisasmD-------------------~tIr~wDlpt~~lID~~~vd~~-----~~sls~SPngD~LA 633 (910)
T KOG1539|consen 578 RITDMTFSPDGRWLISASMD-------------------STIRTWDLPTGTLIDGLLVDSP-----CTSLSFSPNGDFLA 633 (910)
T ss_pred ceeeeEeCCCCcEEEEeecC-------------------CcEEEEeccCcceeeeEecCCc-----ceeeEECCCCCEEE
Confidence 45889999999999977544 3599999998876666665543 24689999999998
Q ss_pred EEEEcCCCCceEEEEEE
Q 003878 316 MCIEENCDPVNKVYYCD 332 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d 332 (789)
-...+ .+.||++.
T Consensus 634 T~Hvd----~~gIylWs 646 (910)
T KOG1539|consen 634 TVHVD----QNGIYLWS 646 (910)
T ss_pred EEEec----CceEEEEE
Confidence 66543 35688774
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.5 Score=53.32 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=29.5
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccc
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSW 177 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~ 177 (789)
.+..+++-|||..|..+. | ..++++|...|..++ ++.+
T Consensus 14 ci~d~afkPDGsqL~lAA---g---~rlliyD~ndG~llq-tLKg 51 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---G---SRLLVYDTSDGTLLQ-PLKG 51 (1081)
T ss_pred chheeEECCCCceEEEec---C---CEEEEEeCCCccccc-cccc
Confidence 577899999999998764 2 379999999997664 3444
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.019 Score=64.71 Aligned_cols=77 Identities=22% Similarity=0.292 Sum_probs=55.3
Q ss_pred EEEEEEcCCCCeeEEEEec-CCCCCceEEeccCCCCCCCc-EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCce
Q 003878 93 YFYFHNTGLQPQSVLYVQD-SLDAKAKVLLDPNTLSDDGT-AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV 170 (789)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~d~~~~~~~~~-~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~ 170 (789)
..|-|+..... ..++.-. .+....+|+||.|++++++. +..+--+.|||.++|||.....|++.+++ |.++++...
T Consensus 98 vl~~rr~~~~e-~~~~ld~~~~~dd~tV~Ld~~~~aed~~Y~~~gls~~spD~~~ia~~~~~~~~e~~~~-v~~~~~~~~ 175 (712)
T KOG2237|consen 98 VLYCRRLLEKE-EEVFLDPNALGDDGTVLLDTNQIAEDFKYFAYGLSESSPDHKYIAYTKDTEGKELFTV-VIDVKFSGP 175 (712)
T ss_pred hHHHHhhhhcc-cceecCCccCCCCceEEechhhhhhcCCceEEeecccCCCceEEEEEEcCCCCcccee-eeeeccCCc
Confidence 33444443222 2355443 23345679999999999855 55555569999999999999999999999 899888755
Q ss_pred e
Q 003878 171 E 171 (789)
Q Consensus 171 ~ 171 (789)
.
T Consensus 176 ~ 176 (712)
T KOG2237|consen 176 V 176 (712)
T ss_pred e
Confidence 4
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.60 E-value=2.2 Score=47.38 Aligned_cols=169 Identities=12% Similarity=-0.023 Sum_probs=92.5
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+++++||++.+|+.... .....+...+-.+...... ++... .| ...+++|+|++++.
T Consensus 118 P~~~~~~~~~~~vYV~n~~----------------~~~~~vsvid~~t~~~~~~-~~vG~-~P---~~~a~~p~g~~vyv 176 (381)
T COG3391 118 PVGLAVDPDGKYVYVANAG----------------NGNNTVSVIDAATNKVTAT-IPVGN-TP---TGVAVDPDGNKVYV 176 (381)
T ss_pred CceEEECCCCCEEEEEecc----------------cCCceEEEEeCCCCeEEEE-EecCC-Cc---ceEEECCCCCeEEE
Confidence 3689999999999987431 0244566665554322212 22221 23 46889999999887
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND 396 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~ 396 (789)
... ..+.|.++|..+.. ... +........+.......++++|..+|+.-... ....+.++|..++.-
T Consensus 177 ~~~----~~~~v~vi~~~~~~--v~~------~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~-~~~~v~~id~~~~~v 243 (381)
T COG3391 177 TNS----DDNTVSVIDTSGNS--VVR------GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS-GSNNVLKIDTATGNV 243 (381)
T ss_pred Eec----CCCeEEEEeCCCcc--eec------cccccccccCCCCceEEECCCCCEEEEEeccC-CCceEEEEeCCCceE
Confidence 652 25779999976531 000 00000011111112345889999888765432 346899999887651
Q ss_pred eEEeccCCCCceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCCCce
Q 003878 397 WFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 397 ~~~l~~~~~~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
.....+.... .-.++...+++ .+++.... ...+.++|..+...
T Consensus 244 ~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~--~~~V~vid~~~~~v 287 (381)
T COG3391 244 TATDLPVGSG-APRGVAVDPAGKAAYVANSQ--GGTVSVIDGATDRV 287 (381)
T ss_pred EEeccccccC-CCCceeECCCCCEEEEEecC--CCeEEEEeCCCCce
Confidence 1111222221 23455566643 44443333 35788888775554
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.58 E-value=1.5 Score=45.68 Aligned_cols=168 Identities=12% Similarity=-0.014 Sum_probs=91.1
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..++++|+||+.+++.... ....+|+....+.... .+... ..+..+.|+++|...++
T Consensus 26 ~~s~AvS~dg~~~A~v~~~----------------~~~~~L~~~~~~~~~~---~~~~g----~~l~~PS~d~~g~~W~v 82 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEG----------------DGGRSLYVGPAGGPVR---PVLTG----GSLTRPSWDPDGWVWTV 82 (253)
T ss_pred ccceEECCCCCeEEEEEEc----------------CCCCEEEEEcCCCcce---eeccC----CccccccccCCCCEEEE
Confidence 5789999999999998721 2334677776654322 22221 13567899999654444
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-ccc--cceeEEEecCCCEEEEEECCCCCCceEEEEECCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-DGF--DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE 393 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-~~~--~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~ 393 (789)
.. .. ....+.. +..++. .. ...+. ... ...-..+||||.+++++...++ ..+|++.-+..
T Consensus 83 ~~--~~-~~~~~~~-~~~~g~-----------~~-~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~-~~~v~va~V~r 145 (253)
T PF10647_consen 83 DD--GS-GGVRVVR-DSASGT-----------GE-PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGG-GGRVYVAGVVR 145 (253)
T ss_pred Ec--CC-CceEEEE-ecCCCc-----------ce-eEEecccccCCceEEEEECCCCcEEEEEEecCC-CCeEEEEEEEe
Confidence 33 21 1222222 322221 01 11111 111 1112348999999998886543 46787775432
Q ss_pred ---C--C---CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec
Q 003878 394 ---P--N---DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL 446 (789)
Q Consensus 394 ---~--~---~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l 446 (789)
+ . ....+.+.. ...+.++.|..++.|++.....+......+..+ |.....+
T Consensus 146 ~~~g~~~~l~~~~~~~~~~-~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~d-G~~~~~l 204 (253)
T PF10647_consen 146 DGDGVPRRLTGPRRVAPPL-LSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVD-GGPSTPL 204 (253)
T ss_pred CCCCCcceeccceEecccc-cCcceeeeecCCCEEEEEeCCCCCceeEEEEcc-CCccccc
Confidence 2 1 122333221 245678999987888887777665433346665 4332444
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.068 Score=52.47 Aligned_cols=107 Identities=13% Similarity=0.165 Sum_probs=73.4
Q ss_pred cEEEEEcCCCCccCC-CCCCHHHHHHHHcCCeEEEEEeecCCC-CCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 539 PCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGG-EYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 539 P~ll~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~RG~g-~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
-.|||+ ||-+.... -.|-......|.+.+|..+++..|.+- +||.- .-..+.+|+..++++++-.++.
T Consensus 37 ~~vvfi-GGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~--------slk~D~edl~~l~~Hi~~~~fS- 106 (299)
T KOG4840|consen 37 VKVVFI-GGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTF--------SLKDDVEDLKCLLEHIQLCGFS- 106 (299)
T ss_pred EEEEEE-cccCCCccccccHHHHHHHHhhccceeeeeeccccccccccc--------cccccHHHHHHHHHHhhccCcc-
Confidence 344444 55444332 233334556677799999999988653 24421 1234568999999988877654
Q ss_pred CCcEEEEeeChHHHHHHHHHHh--CCCceeEEEecCCccccc
Q 003878 617 SRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVMDML 656 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~--~pd~f~a~v~~~p~~d~~ 656 (789)
..|+++|||-|--=++..+++ .|....|+|+++|+.|-.
T Consensus 107 -t~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 107 -TDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred -cceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 389999999998777777644 256789999999999965
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.49 E-value=2.6 Score=45.92 Aligned_cols=249 Identities=18% Similarity=0.180 Sum_probs=131.5
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..|+.+.+||-..--.|+.++.| +|+++|++++.... +-
T Consensus 235 ~~Vs~l~F~P~n~s~i~ssSyDG----tiR~~D~~~~i~e~--v~----------------------------------- 273 (498)
T KOG4328|consen 235 GPVSGLKFSPANTSQIYSSSYDG----TIRLQDFEGNISEE--VL----------------------------------- 273 (498)
T ss_pred ccccceEecCCChhheeeeccCc----eeeeeeecchhhHH--Hh-----------------------------------
Confidence 35788899998888889998888 79999999873211 00
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
++| +.++| +.+..++.+...+++...- . .+-.+++.++.++-..
T Consensus 274 -------s~~---~d~~~-------fs~~d~~~e~~~vl~~~~~-----------------G--~f~~iD~R~~~s~~~~ 317 (498)
T KOG4328|consen 274 -------SLD---TDNIW-------FSSLDFSAESRSVLFGDNV-----------------G--NFNVIDLRTDGSEYEN 317 (498)
T ss_pred -------hcC---cccee-------eeeccccCCCccEEEeecc-----------------c--ceEEEEeecCCccchh
Confidence 000 11112 4566677777777665321 1 2344555555443111
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-eeEEEecCC
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIANDD 370 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dG 370 (789)
+ .-+..-+.++++.|-..+++++++.. ....+||+.....+ ..|+......... .-++|||.|
T Consensus 318 ~---~lh~kKI~sv~~NP~~p~~laT~s~D----~T~kIWD~R~l~~K---------~sp~lst~~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 318 L---RLHKKKITSVALNPVCPWFLATASLD----QTAKIWDLRQLRGK---------ASPFLSTLPHRRSVNSAYFSPSG 381 (498)
T ss_pred h---hhhhcccceeecCCCCchheeecccC----cceeeeehhhhcCC---------CCcceecccccceeeeeEEcCCC
Confidence 1 11223467889999999988877532 33566787653100 1122222222221 224599988
Q ss_pred CEEEEEECCCCCCceEEEEECC---CCCCeEEeccCCCC--c--eeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCcee
Q 003878 371 TVFTFLTNKDAPKYKIIRVDLK---EPNDWFEVIPEAER--D--VLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLL 443 (789)
Q Consensus 371 ~~l~~~tn~~~~~~~L~~~dl~---~~~~~~~l~~~~~~--~--~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~ 443 (789)
..|+ .|.. +..|-++|.. ........++|... . ......|.++..++++.+-- ..|-++|...|+.+
T Consensus 382 gtl~-TT~~---D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~--r~IDv~~~~~~q~v 455 (498)
T KOG4328|consen 382 GTLL-TTCQ---DNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP--RPIDVFDGNGGQMV 455 (498)
T ss_pred CceE-eecc---CCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccC--cceeEEcCCCCEEe
Confidence 8843 3333 2456666653 11112334455421 1 12234677755555555432 35888888755534
Q ss_pred eecccC-CeeEEEe-ecccCCcEEEEEEcCCCCCcEEEEEE
Q 003878 444 HQLPIE-IGSVNAI-SARREDSVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 444 ~~l~~~-~~~v~~~-s~s~d~~~l~~~~ss~~~P~~ly~~d 482 (789)
-++..| ..+|..+ .+.|-...++ ++.+.-+.+|++-
T Consensus 456 ~el~~P~~~tI~~vn~~HP~~~~~~---aG~~s~Gki~vft 493 (498)
T KOG4328|consen 456 CELHDPESSTIPSVNEFHPMRDTLA---AGGNSSGKIYVFT 493 (498)
T ss_pred eeccCccccccccceeeccccccee---ccCCccceEEEEe
Confidence 455545 2233222 3445444232 2445556666654
|
|
| >PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3 | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.68 Score=48.24 Aligned_cols=126 Identities=10% Similarity=0.033 Sum_probs=71.5
Q ss_pred ecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCc---cCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcc
Q 003878 514 PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI---SVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGG 590 (789)
Q Consensus 514 ~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~---~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~ 590 (789)
+++-| .|.+.+.-. ++++.|+||..|--.-. ....-|.....+.+. ..+.++-+|..|..+-....-
T Consensus 5 ~t~~G--~v~V~v~G~----~~~~kp~ilT~HDvGlNh~scF~~ff~~~~m~~i~-~~f~i~Hi~aPGqe~ga~~~p--- 74 (283)
T PF03096_consen 5 ETPYG--SVHVTVQGD----PKGNKPAILTYHDVGLNHKSCFQGFFNFEDMQEIL-QNFCIYHIDAPGQEEGAATLP--- 74 (283)
T ss_dssp EETTE--EEEEEEESS------TTS-EEEEE--TT--HHHHCHHHHCSHHHHHHH-TTSEEEEEE-TTTSTT--------
T ss_pred ccCce--EEEEEEEec----CCCCCceEEEeccccccchHHHHHHhcchhHHHHh-hceEEEEEeCCCCCCCccccc---
Confidence 33445 566655522 23478999999984211 122333334456666 789999999998765222211
Q ss_pred cccCCcchHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 591 ALAKKQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 591 ~~~~~~~~~~D~~~~~~~L~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
....-.+++++.+.+..+.+. +. +.+..+|--+|+++-...|..+|++.-+.|+..|..
T Consensus 75 -~~y~yPsmd~LAe~l~~Vl~~f~l---k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~ 134 (283)
T PF03096_consen 75 -EGYQYPSMDQLAEMLPEVLDHFGL---KSVIGFGVGAGANILARFALKHPERVLGLILVNPTC 134 (283)
T ss_dssp -TT-----HHHHHCTHHHHHHHHT------EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---
T ss_pred -ccccccCHHHHHHHHHHHHHhCCc---cEEEEEeeccchhhhhhccccCccceeEEEEEecCC
Confidence 122334566665555555544 32 479999999999999999999999999999887644
|
Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A. |
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.43 E-value=3.6 Score=44.89 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=27.2
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCcee
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE 171 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~ 171 (789)
+...+.++.+|||++++ |..+..| +|--|++.+|...
T Consensus 141 H~~s~~~vals~d~~~~-fsask~g----~i~kw~v~tgk~~ 177 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRV-FSASKDG----TILKWDVLTGKKD 177 (479)
T ss_pred ccCcceEEEeeccccce-eecCCCc----ceeeeehhcCccc
Confidence 34567889999999987 4444333 8989999999643
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.40 E-value=5.6 Score=44.08 Aligned_cols=204 Identities=11% Similarity=0.038 Sum_probs=115.6
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.+++.+++++.+|....+ ...+...+..+.......... . .-..++++|||+++++.
T Consensus 77 ~~i~v~~~~~~vyv~~~~------------------~~~v~vid~~~~~~~~~~~vG--~---~P~~~~~~~~~~~vYV~ 133 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGD------------------SNTVSVIDTATNTVLGSIPVG--L---GPVGLAVDPDGKYVYVA 133 (381)
T ss_pred cceeeCCCCCeEEEecCC------------------CCeEEEEcCcccceeeEeeec--c---CCceEEECCCCCEEEEE
Confidence 567788899988876432 233555554332211111111 1 12367899999999877
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCe
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDW 397 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~ 397 (789)
-... ..+.+.++|..+.. .......+.......++|+|..+|+.. .....|..+|.++...+
T Consensus 134 n~~~--~~~~vsvid~~t~~-------------~~~~~~vG~~P~~~a~~p~g~~vyv~~---~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 134 NAGN--GNNTVSVIDAATNK-------------VTATIPVGNTPTGVAVDPDGNKVYVTN---SDDNTVSVIDTSGNSVV 195 (381)
T ss_pred eccc--CCceEEEEeCCCCe-------------EEEEEecCCCcceEEECCCCCeEEEEe---cCCCeEEEEeCCCccee
Confidence 6432 25778999987742 111222222222345889999888654 34578999997665411
Q ss_pred E-E---eccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeee-cccCCeeEEEeecccCCcEEEEEEcC
Q 003878 398 F-E---VIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQ-LPIEIGSVNAISARREDSVVFISFTS 471 (789)
Q Consensus 398 ~-~---l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~-l~~~~~~v~~~s~s~d~~~l~~~~ss 471 (789)
+ . .++.. ..-..+.+.++ .++++....+....+..+|..++..... +......-..+..+|+++.+++....
T Consensus 196 ~~~~~~~~~~~--~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~ 273 (381)
T COG3391 196 RGSVGSLVGVG--TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ 273 (381)
T ss_pred ccccccccccC--CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC
Confidence 1 0 11111 11134556554 4466655554335788899887765322 22222122345678999987765443
Q ss_pred CCCCcEEEEEECCCCC
Q 003878 472 FLIPGIVYQCNLKTET 487 (789)
Q Consensus 472 ~~~P~~ly~~dl~tg~ 487 (789)
...++..|..+..
T Consensus 274 ---~~~V~vid~~~~~ 286 (381)
T COG3391 274 ---GGTVSVIDGATDR 286 (381)
T ss_pred ---CCeEEEEeCCCCc
Confidence 7899999987763
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.079 Score=60.22 Aligned_cols=131 Identities=18% Similarity=0.174 Sum_probs=88.7
Q ss_pred eEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCH-HHHHHHHcCCeEEEEEeecCCCCC----ChhHHh--cccc
Q 003878 520 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV-SRTILMRHLGAVFCIANIRGGGEY----GEEWHK--GGAL 592 (789)
Q Consensus 520 ~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~-~~~~~l~~~G~~v~~~~~RG~g~~----g~~~~~--~~~~ 592 (789)
..|...+.+|.+. ++ ..+..+-||+.......-.. ....-+. +||+++.-|- |.... ...|.. ....
T Consensus 15 ~~i~fev~LP~~W--Ng--R~~~~GgGG~~G~i~~~~~~~~~~~~~~-~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~ 88 (474)
T PF07519_consen 15 PNIRFEVWLPDNW--NG--RFLQVGGGGFAGGINYADGKASMATALA-RGYATASTDS-GHQGSAGSDDASFGNNPEALL 88 (474)
T ss_pred ceEEEEEECChhh--cc--CeEEECCCeeeCcccccccccccchhhh-cCeEEEEecC-CCCCCcccccccccCCHHHHH
Confidence 4788888889865 23 46667767765444333210 0233455 9999999883 22111 112221 1112
Q ss_pred cCCcchHHHHHHHHHHHHHcCC-CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccc
Q 003878 593 AKKQNCFDDFISASEYLISAGY-TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML 656 (789)
Q Consensus 593 ~~~~~~~~D~~~~~~~L~~~~~-~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~ 656 (789)
++......+...+.+.|++.-| ..|++-...|.|.||-..+.+|-++|+.|.++|+.+|..++.
T Consensus 89 dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~~ 153 (474)
T PF07519_consen 89 DFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINWT 153 (474)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHHH
Confidence 3444556777778888888855 477999999999999999999999999999999999976653
|
It also includes several bacterial homologues of unknown function. |
| >PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.79 Score=46.61 Aligned_cols=102 Identities=11% Similarity=-0.020 Sum_probs=63.8
Q ss_pred EEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCH-HHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHH
Q 003878 524 MFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV-SRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDF 602 (789)
Q Consensus 524 ~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~-~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~ 602 (789)
.|+..|+. .-.||++-||......|.-.. ..+..|.++||+|++.-|.-+-.. +.. .......+
T Consensus 8 ~wvl~P~~------P~gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tfDH---~~~------A~~~~~~f 72 (250)
T PF07082_consen 8 SWVLIPPR------PKGVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTFDH---QAI------AREVWERF 72 (250)
T ss_pred cEEEeCCC------CCEEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCCcH---HHH------HHHHHHHH
Confidence 36666652 236777778754444444322 235555569999999888643221 111 12335567
Q ss_pred HHHHHHHHHcCCCCCC--cEEEEeeChHHHHHHHHHHhCC
Q 003878 603 ISASEYLISAGYTQSR--KLCIEGGSNGGLLVGACINQRP 640 (789)
Q Consensus 603 ~~~~~~L~~~~~~d~~--~i~i~G~S~GG~l~~~~~~~~p 640 (789)
..|++.|.+++..++. .+.-+|||+|..+-+.+....+
T Consensus 73 ~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~ 112 (250)
T PF07082_consen 73 ERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFD 112 (250)
T ss_pred HHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhcc
Confidence 7788888877644444 5778999999988877766543
|
Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis. |
| >KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.11 Score=57.45 Aligned_cols=117 Identities=16% Similarity=0.089 Sum_probs=80.6
Q ss_pred CCccEEEEEcCCCCccCCC-CC-CHHHHHHHHcCCeEEEEEeecCCCCC---ChhHHhcccccCCcchHHHHHHHHHHHH
Q 003878 536 GSHPCLLYGYGGFNISVTP-SF-SVSRTILMRHLGAVFCIANIRGGGEY---GEEWHKGGALAKKQNCFDDFISASEYLI 610 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~-~~-~~~~~~~l~~~G~~v~~~~~RG~g~~---g~~~~~~~~~~~~~~~~~D~~~~~~~L~ 610 (789)
...|++|++-|-.-....+ .. ...+..|..+.|..|+....|=-|.. +..-....+...-.....|+...++.+-
T Consensus 84 ~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n 163 (514)
T KOG2182|consen 84 PGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMN 163 (514)
T ss_pred CCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHH
Confidence 4568999997743222222 11 23467888899999999999954421 1111111112222345788888888887
Q ss_pred Hc-CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 611 SA-GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 611 ~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
.+ +.-++.+.+..|+|+-|.|++++=..+||+..++|+.++.
T Consensus 164 ~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSap 206 (514)
T KOG2182|consen 164 AKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAP 206 (514)
T ss_pred hhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccc
Confidence 66 4667779999999999999999999999998888876543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.49 Score=54.41 Aligned_cols=149 Identities=12% Similarity=0.111 Sum_probs=97.4
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec------ccccccccccccCccceeeeeeccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA------DALSWVCFCFSHSFGYFFHLTISLLNVPTYK 203 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 203 (789)
+.-++..+.|++-.-.++. +|+....|++||+....... +.+..+.+ .|..
T Consensus 132 H~Rs~~~ldfh~tep~ili----SGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~f------------------sp~~- 188 (839)
T KOG0269|consen 132 HERSANKLDFHSTEPNILI----SGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKF------------------SPGY- 188 (839)
T ss_pred hccceeeeeeccCCccEEE----ecCCCceEEEEeeecccccccccccchhhhceee------------------ccCC-
Confidence 3446778888888777775 46666799999998874332 22223311 1111
Q ss_pred cccccccceeeEEEeeeccccceeeeeeec------ccc-----cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCC
Q 003878 204 LFLYLRGIFFFFYLFSLVKSTIYSFWSVVS------QFK-----FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN 272 (789)
Q Consensus 204 ~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~------~~~-----~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~ 272 (789)
-...++.+++|+-|+|.+-. ++. +.-..|+|++.+|+- .+
T Consensus 189 ----------~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lAT-------------------GG 239 (839)
T KOG0269|consen 189 ----------GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLAT-------------------GG 239 (839)
T ss_pred ----------CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeee-------------------cC
Confidence 12355678999999999866 222 245689998877763 34
Q ss_pred cccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCC
Q 003878 273 LYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 335 (789)
Q Consensus 273 ~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~ 335 (789)
|..++.+|+.++.......+.+... + +..+.|-|+.++.+.+++... ...|+++|+.-
T Consensus 240 RDK~vkiWd~t~~~~~~~~tInTia-p--v~rVkWRP~~~~hLAtcsmv~--dtsV~VWDvrR 297 (839)
T KOG0269|consen 240 RDKMVKIWDMTDSRAKPKHTINTIA-P--VGRVKWRPARSYHLATCSMVV--DTSVHVWDVRR 297 (839)
T ss_pred CCccEEEEeccCCCccceeEEeecc-e--eeeeeeccCccchhhhhhccc--cceEEEEeecc
Confidence 6677999999876655444433211 2 456899999998776665444 46799999865
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.26 E-value=3.3 Score=42.67 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=34.2
Q ss_pred CCceEEeccCCC-------CCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCC
Q 003878 115 AKAKVLLDPNTL-------SDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ 168 (789)
Q Consensus 115 ~~~~~l~d~~~~-------~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg 168 (789)
|..-.++|++.- +..+..-.+.-.+||||.+|.-+-+.-...+..|-|+|...+
T Consensus 90 Gtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 90 GTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 445567777763 223334456677999999874443322344678999998755
|
|
| >PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.036 Score=48.98 Aligned_cols=59 Identities=19% Similarity=0.076 Sum_probs=45.3
Q ss_pred CCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 706 YPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 706 ~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
.+|+|++.++.|+..|+..+.++.++|... .+++.++.||+.....+. -..+.+.+||.
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~s--------------~lvt~~g~gHg~~~~~s~--C~~~~v~~yl~ 92 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPGS--------------RLVTVDGAGHGVYAGGSP--CVDKAVDDYLL 92 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCCc--------------eEEEEeccCcceecCCCh--HHHHHHHHHHH
Confidence 489999999999999999999999888643 678888999997643332 22345667775
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.24 E-value=1.2 Score=49.68 Aligned_cols=194 Identities=14% Similarity=0.109 Sum_probs=105.2
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
..+.-||||+++.-+ ..+..+|.++++..- .+-|+..-+..-+.-.-+|.|=..++|.
T Consensus 55 t~ik~s~DGqY~lAt------------------G~YKP~ikvydlanL----SLKFERhlDae~V~feiLsDD~SK~v~L 112 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLAT------------------GTYKPQIKVYDLANL----SLKFERHLDAEVVDFEILSDDYSKSVFL 112 (703)
T ss_pred ceeEecCCCcEEEEe------------------cccCCceEEEEcccc----eeeeeecccccceeEEEeccchhhheEe
Confidence 678899999999866 345566887777532 1233332211111112345566666665
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee--ccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI--DGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
..++. -+ +....| .-....+ .+++..|..++- .||+. +....||+++|+.|.
T Consensus 113 ~~DR~---Ie---fHak~G-------------~hy~~RIP~~GRDm~y~~~sc---Dly~~----gsg~evYRlNLEqGr 166 (703)
T KOG2321|consen 113 QNDRT---IE---FHAKYG-------------RHYRTRIPKFGRDMKYHKPSC---DLYLV----GSGSEVYRLNLEQGR 166 (703)
T ss_pred ecCce---ee---ehhhcC-------------eeeeeecCcCCccccccCCCc---cEEEe----ecCcceEEEEccccc
Confidence 54432 11 111111 0011111 133333433332 35543 234679999999886
Q ss_pred CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC------Ce-----eEEEeecccCCcE
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE------IG-----SVNAISARREDSV 464 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~------~~-----~v~~~s~s~d~~~ 464 (789)
-+.++-... .-+..+.+.+-+.|++.+..+| .+-.||..+...+..|..+ .+ +|++++++.++=.
T Consensus 167 fL~P~~~~~--~~lN~v~in~~hgLla~Gt~~g--~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~ 242 (703)
T KOG2321|consen 167 FLNPFETDS--GELNVVSINEEHGLLACGTEDG--VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLH 242 (703)
T ss_pred ccccccccc--ccceeeeecCccceEEecccCc--eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCcee
Confidence 223332222 2345566666578888888777 6788888755443444321 12 3666777766655
Q ss_pred EEEEEcCCCCCcEEEEEECCCCC
Q 003878 465 VFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 465 l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+.+. +.-+.+|.||+.+.+
T Consensus 243 ~aVG----ts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 243 VAVG----TSTGSVLIYDLRASK 261 (703)
T ss_pred EEee----ccCCcEEEEEcccCC
Confidence 5554 345789999998763
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=95.17 E-value=4.6 Score=41.70 Aligned_cols=210 Identities=10% Similarity=0.031 Sum_probs=99.9
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccccee
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFF 213 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 213 (789)
++++++.||.+.|+.+.+..+ .|+..+++ |+++. .+.-. | ++
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~----~i~els~~-G~vlr-~i~l~-g-----~~-------------------------- 65 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPG----EIYELSLD-GKVLR-RIPLD-G-----FG-------------------------- 65 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTT----EEEEEETT---EEE-EEE-S-S------S--------------------------
T ss_pred ccccEEcCCCCeEEEEECCCC----EEEEEcCC-CCEEE-EEeCC-C-----CC--------------------------
Confidence 789999999998876666544 68888975 55553 22211 0 01
Q ss_pred eEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC----c
Q 003878 214 FFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE----D 289 (789)
Q Consensus 214 ~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~----~ 289 (789)
+..++++.-+++ ++.+ ..+..+++.+.++..... +
T Consensus 66 ----------------------D~EgI~y~g~~~-~vl~------------------~Er~~~L~~~~~~~~~~~~~~~~ 104 (248)
T PF06977_consen 66 ----------------------DYEGITYLGNGR-YVLS------------------EERDQRLYIFTIDDDTTSLDRAD 104 (248)
T ss_dssp ----------------------SEEEEEE-STTE-EEEE------------------ETTTTEEEEEEE----TT--EEE
T ss_pred ----------------------CceeEEEECCCE-EEEE------------------EcCCCcEEEEEEeccccccchhh
Confidence 356888876653 3333 224456777777432211 1
Q ss_pred EE--EEecC-CCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEe-eeccccceeEE
Q 003878 290 IL--CWKDP-EHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK-LIDGFDAQYEV 365 (789)
Q Consensus 290 ~~--~~~~~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~ 365 (789)
.. -...+ .+..-+.+++|+|.++.|++...+. -..||-++............ ...+.. ...-.+..-..
T Consensus 105 ~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~---P~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 105 VQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK---PKRLYEVNGFPGGFDLFVSD----DQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp EEEEE---S---SS--EEEEEETTTTEEEEEEESS---SEEEEEEESTT-SS--EEEE-----HHHH-HT--SS---EEE
T ss_pred ceEEecccccCCCcceEEEEEcCCCCEEEEEeCCC---ChhhEEEccccCccceeecc----ccccccccceeccccceE
Confidence 11 11111 1123367899999999988775432 35678777622110000000 000000 00011112223
Q ss_pred EecCCCEEEEEECCCCCCceEEEEECCCCC-CeEEeccCC-----CCceeeeEEEecCCEEEEEEEeCCeEEEEEE
Q 003878 366 IANDDTVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEA-----ERDVLESATAVNLNQMIVSYLSDVKYVLQIR 435 (789)
Q Consensus 366 ~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~-~~~~l~~~~-----~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~ 435 (789)
+.|...+||+++... ..|+.+|.++.- ....|.... .-..-+++++.+++.||++...| ..|++
T Consensus 178 ~~p~t~~lliLS~es---~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN---lfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSDES---RLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN---LFYRF 247 (248)
T ss_dssp EETTTTEEEEEETTT---TEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTT---EEEEE
T ss_pred EcCCCCeEEEEECCC---CeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCc---eEEEe
Confidence 677788999998764 578888855431 122232211 01235789998877777766433 45554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids [] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.066 Score=54.07 Aligned_cols=89 Identities=15% Similarity=0.086 Sum_probs=45.0
Q ss_pred EEEEcCCCCccCCCCCCHHHHHHHHcCCeE---EEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 541 LLYGYGGFNISVTPSFSVSRTILMRHLGAV---FCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 541 ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~---v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
||++||-.+. ....|......|. ++||. +...+|-...... ...... ........+.+.++.+.+. +-.
T Consensus 4 VVlVHG~~~~-~~~~w~~~~~~l~-~~GY~~~~vya~tyg~~~~~~--~~~~~~--~~~~~~~~l~~fI~~Vl~~--TGa 75 (219)
T PF01674_consen 4 VVLVHGTGGN-AYSNWSTLAPYLK-AAGYCDSEVYALTYGSGNGSP--SVQNAH--MSCESAKQLRAFIDAVLAY--TGA 75 (219)
T ss_dssp EEEE--TTTT-TCGGCCHHHHHHH-HTT--CCCEEEE--S-CCHHT--HHHHHH--B-HHHHHHHHHHHHHHHHH--HT-
T ss_pred EEEECCCCcc-hhhCHHHHHHHHH-HcCCCcceeEeccCCCCCCCC--cccccc--cchhhHHHHHHHHHHHHHh--hCC
Confidence 6788996542 3345555444444 59999 7888884332211 111100 1112234555555555543 556
Q ss_pred CcEEEEeeChHHHHHHHHHHh
Q 003878 618 RKLCIEGGSNGGLLVGACINQ 638 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~ 638 (789)
+|-|+|||+||.++-.++..
T Consensus 76 -kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 76 -KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp --EEEEEETCHHHHHHHHHHH
T ss_pred -EEEEEEcCCcCHHHHHHHHH
Confidence 99999999999998887753
|
This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A .... |
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.22 Score=52.35 Aligned_cols=158 Identities=11% Similarity=0.131 Sum_probs=92.4
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.+..+.++|--.-|+-+ +.....|.++|+.++.++...+..+
T Consensus 189 ti~svkfNpvETsILas----~~sDrsIvLyD~R~~~Pl~KVi~~m---------------------------------- 230 (433)
T KOG0268|consen 189 SISSVKFNPVETSILAS----CASDRSIVLYDLRQASPLKKVILTM---------------------------------- 230 (433)
T ss_pred ceeEEecCCCcchheee----eccCCceEEEecccCCccceeeeec----------------------------------
Confidence 35566677765554432 2234579999999998776554444
Q ss_pred eeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 292 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~ 292 (789)
+...++|+| ..+.|+. .+..+.+|.+++.-- .+.+-+
T Consensus 231 -----------------------RTN~IswnP--eafnF~~-----------------a~ED~nlY~~DmR~l-~~p~~v 267 (433)
T KOG0268|consen 231 -----------------------RTNTICWNP--EAFNFVA-----------------ANEDHNLYTYDMRNL-SRPLNV 267 (433)
T ss_pred -----------------------cccceecCc--cccceee-----------------ccccccceehhhhhh-cccchh
Confidence 458899999 3444443 234566888887532 223334
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCC
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDT 371 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~ 371 (789)
+. ++...+.++.+||-|+-++-.+.+. .|.++.+..+... . .-.+..-.... ..||.|.+
T Consensus 268 ~~--dhvsAV~dVdfsptG~EfvsgsyDk-----sIRIf~~~~~~SR---------d---iYhtkRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 268 HK--DHVSAVMDVDFSPTGQEFVSGSYDK-----SIRIFPVNHGHSR---------D---IYHTKRMQHVFCVKYSMDSK 328 (433)
T ss_pred hc--ccceeEEEeccCCCcchhccccccc-----eEEEeecCCCcch---------h---hhhHhhhheeeEEEEecccc
Confidence 43 3345577899999999988766543 3666666554211 0 00011111122 23898887
Q ss_pred EEEEEECCCCCCceEEEEECC
Q 003878 372 VFTFLTNKDAPKYKIIRVDLK 392 (789)
Q Consensus 372 ~l~~~tn~~~~~~~L~~~dl~ 392 (789)
+++ +..+..|.+|++....
T Consensus 329 yi~--SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 329 YII--SGSDDGNVRLWKAKAS 347 (433)
T ss_pred EEE--ecCCCcceeeeecchh
Confidence 554 3333457788876643
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.09 E-value=1.5 Score=50.11 Aligned_cols=110 Identities=12% Similarity=0.162 Sum_probs=64.7
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc---cee--EEEecCCCEEEEE
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD---AQY--EVIANDDTVFTFL 376 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~---~~~--~~~s~dG~~l~~~ 376 (789)
+...+..|..++++....++ .|.+++++.|+. .+.+++.. ... ....|.| +|+.
T Consensus 599 lYDm~Vdp~~k~v~t~cQDr-----nirif~i~sgKq--------------~k~FKgs~~~eG~lIKv~lDPSg--iY~a 657 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDR-----NIRIFDIESGKQ--------------VKSFKGSRDHEGDLIKVILDPSG--IYLA 657 (1080)
T ss_pred EEEeeeCCCcceEEEEeccc-----ceEEEeccccce--------------eeeecccccCCCceEEEEECCCc--cEEE
Confidence 34677889999998877543 377889888641 22232211 111 1244544 4544
Q ss_pred ECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC
Q 003878 377 TNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 377 tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~ 438 (789)
+.- .+-.|..+|.-+++-....+.|. ..+.++-+.+|=+-+++...|| =|++|.+.
T Consensus 658 tSc--sdktl~~~Df~sgEcvA~m~GHs--E~VTG~kF~nDCkHlISvsgDg--CIFvW~lp 713 (1080)
T KOG1408|consen 658 TSC--SDKTLCFVDFVSGECVAQMTGHS--EAVTGVKFLNDCKHLISVSGDG--CIFVWKLP 713 (1080)
T ss_pred Eee--cCCceEEEEeccchhhhhhcCcc--hheeeeeecccchhheeecCCc--eEEEEECc
Confidence 432 34568899988877334455555 4577888887533344555555 46666654
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.74 Score=53.42 Aligned_cols=191 Identities=16% Similarity=0.181 Sum_probs=101.1
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..|-.++||-++=.|- .+=..++++|++.+.+-+. ||+|. +| ||-=.|+ |-.
T Consensus 370 ~DILDlSWSKn~fLLS------SSMDKTVRLWh~~~~~CL~--------~F~Hn-df---VTcVaFn-PvD--------- 421 (712)
T KOG0283|consen 370 ADILDLSWSKNNFLLS------SSMDKTVRLWHPGRKECLK--------VFSHN-DF---VTCVAFN-PVD--------- 421 (712)
T ss_pred hhheecccccCCeeEe------ccccccEEeecCCCcceee--------EEecC-Ce---eEEEEec-ccC---------
Confidence 3466777887764443 2224689999999886543 12221 10 1111111 111
Q ss_pred eeeEEEeee-ccccceeeeeeec-------ccc--cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEE
Q 003878 212 FFFFYLFSL-VKSTIYSFWSVVS-------QFK--FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHF 281 (789)
Q Consensus 212 ~~~~~~~~s-~~~g~~~l~~~~~-------~~~--~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (789)
.-+|+| .-+|--+||.+.. .++ +.+++++|||++.++..+... . .++..
T Consensus 422 ---DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~-----------------C-~fY~t 480 (712)
T KOG0283|consen 422 ---DRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGY-----------------C-RFYDT 480 (712)
T ss_pred ---CCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccE-----------------E-EEEEc
Confidence 124544 5899999999987 222 489999999999998876531 1 11111
Q ss_pred CCCCCCCcEEEEec--CC-CCeeEEEEEEecCC-cEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec
Q 003878 282 LGTKQSEDILCWKD--PE-HPKYIFSGHVTEDG-QYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID 357 (789)
Q Consensus 282 lg~~~~~~~~~~~~--~~-~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~ 357 (789)
.+-....+..|-.. .. ....+.++++.|.. ..|+++++ .++|.++|+.+.. +....+
T Consensus 481 ~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSn-----DSrIRI~d~~~~~--------------lv~KfK 541 (712)
T KOG0283|consen 481 EGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSN-----DSRIRIYDGRDKD--------------LVHKFK 541 (712)
T ss_pred cCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecC-----CCceEEEeccchh--------------hhhhhc
Confidence 11111111111100 00 01135566665432 25666654 4678999985421 111112
Q ss_pred ccc----ceeEEEecCCCEEEEEECCCCCCceEEEEECCCC
Q 003878 358 GFD----AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 394 (789)
Q Consensus 358 ~~~----~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~ 394 (789)
++. ..-+.++.||++|+..+. +..||.|+.+..
T Consensus 542 G~~n~~SQ~~Asfs~Dgk~IVs~se----Ds~VYiW~~~~~ 578 (712)
T KOG0283|consen 542 GFRNTSSQISASFSSDGKHIVSASE----DSWVYIWKNDSF 578 (712)
T ss_pred ccccCCcceeeeEccCCCEEEEeec----CceEEEEeCCCC
Confidence 211 122457889999887652 357999987654
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.29 Score=50.96 Aligned_cols=174 Identities=15% Similarity=0.181 Sum_probs=91.5
Q ss_pred ccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccE
Q 003878 274 YHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV 353 (789)
Q Consensus 274 ~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 353 (789)
..+|.+|+..++..-.+++.. -..+..+.++ ..+++-.+.+ ..+-++|+.. |.. ....
T Consensus 256 DsTvrvWDv~tge~l~tlihH----ceaVLhlrf~--ng~mvtcSkD-----rsiaVWdm~s-ps~----------it~r 313 (499)
T KOG0281|consen 256 DSTVRVWDVNTGEPLNTLIHH----CEAVLHLRFS--NGYMVTCSKD-----RSIAVWDMAS-PTD----------ITLR 313 (499)
T ss_pred CceEEEEeccCCchhhHHhhh----cceeEEEEEe--CCEEEEecCC-----ceeEEEeccC-chH----------HHHH
Confidence 346888888876543333322 1224455554 2344433322 3356667665 211 1111
Q ss_pred eeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEE
Q 003878 354 KLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVL 432 (789)
Q Consensus 354 ~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L 432 (789)
.+..+..+....+.=|.+ |+++.. ++-.|-+++..+.+-.+++-.+. .+++... .++++++++.+. .|
T Consensus 314 rVLvGHrAaVNvVdfd~k--yIVsAS--gDRTikvW~~st~efvRtl~gHk-----RGIAClQYr~rlvVSGSSDn--tI 382 (499)
T KOG0281|consen 314 RVLVGHRAAVNVVDFDDK--YIVSAS--GDRTIKVWSTSTCEFVRTLNGHK-----RGIACLQYRDRLVVSGSSDN--TI 382 (499)
T ss_pred HHHhhhhhheeeeccccc--eEEEec--CCceEEEEeccceeeehhhhccc-----ccceehhccCeEEEecCCCc--eE
Confidence 111222223333333445 444433 34568888988887444444443 2333332 379999988875 79
Q ss_pred EEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 433 QIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 433 ~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
++||+..|+.++.|..+..-|.-+. .|.+++. |-.--+.+-.||+.++
T Consensus 383 Rlwdi~~G~cLRvLeGHEeLvRciR--Fd~krIV----SGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 383 RLWDIECGACLRVLEGHEELVRCIR--FDNKRIV----SGAYDGKIKVWDLQAA 430 (499)
T ss_pred EEEeccccHHHHHHhchHHhhhhee--ecCceee----eccccceEEEEecccc
Confidence 9999999988777765533333222 2444433 2234456667776554
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.92 E-value=1 Score=51.88 Aligned_cols=159 Identities=9% Similarity=-0.016 Sum_probs=94.0
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...+.|++-.-.|+.+. .....|..|++..+.+.. +.+. +...+.++.|||--...++
T Consensus 136 ~~~ldfh~tep~iliSG------------------SQDg~vK~~DlR~~~S~~-t~~~---nSESiRDV~fsp~~~~~F~ 193 (839)
T KOG0269|consen 136 ANKLDFHSTEPNILISG------------------SQDGTVKCWDLRSKKSKS-TFRS---NSESIRDVKFSPGYGNKFA 193 (839)
T ss_pred eeeeeeccCCccEEEec------------------CCCceEEEEeeecccccc-cccc---cchhhhceeeccCCCceEE
Confidence 36678888777777762 334568888887665432 2222 2334668899997777777
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEE-EecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV-IANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
...++ .-|-++|+.. + .++..+++...+..+.. |.|++..|+ | ++.+..+..|+..++.
T Consensus 194 s~~ds----G~lqlWDlRq-p-----------~r~~~k~~AH~GpV~c~nwhPnr~~lA--T--GGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 194 SIHDS----GYLQLWDLRQ-P-----------DRCEKKLTAHNGPVLCLNWHPNREWLA--T--GGRDKMVKIWDMTDSR 253 (839)
T ss_pred EecCC----ceEEEeeccC-c-----------hhHHHHhhcccCceEEEeecCCCceee--e--cCCCccEEEEeccCCC
Confidence 76553 3477788875 2 33344555554444433 999776555 2 2334668888887654
Q ss_pred CeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECC
Q 003878 396 DWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~ 438 (789)
..++..-.....+.-+.|-|. .+.+++..--+...|++||+.
T Consensus 254 -~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 254 -AKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred -ccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 111111111245666778774 234444444445689999986
|
|
| >KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.063 Score=59.58 Aligned_cols=90 Identities=18% Similarity=0.160 Sum_probs=68.1
Q ss_pred CCccEEEEEcCCC-CccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHc--
Q 003878 536 GSHPCLLYGYGGF-NISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA-- 612 (789)
Q Consensus 536 ~~~P~ll~~hGg~-~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~-- 612 (789)
...-+|+++|||. -.......-+...+|..+.|.-++.+||.-..| ...+...+.+..|.-|++.+
T Consensus 394 ~S~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLAPE-----------aPFPRaleEv~fAYcW~inn~a 462 (880)
T KOG4388|consen 394 RSRSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLAPE-----------APFPRALEEVFFAYCWAINNCA 462 (880)
T ss_pred CCceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccCCC-----------CCCCcHHHHHHHHHHHHhcCHH
Confidence 3456899999984 344556666667788888999999999876543 44566778888888999876
Q ss_pred --CCCCCCcEEEEeeChHHHHHHHHHH
Q 003878 613 --GYTQSRKLCIEGGSNGGLLVGACIN 637 (789)
Q Consensus 613 --~~~d~~~i~i~G~S~GG~l~~~~~~ 637 (789)
|+ ..+||++.|.|+||.|...++.
T Consensus 463 llG~-TgEriv~aGDSAGgNL~~~VaL 488 (880)
T KOG4388|consen 463 LLGS-TGERIVLAGDSAGGNLCFTVAL 488 (880)
T ss_pred HhCc-ccceEEEeccCCCcceeehhHH
Confidence 44 4689999999999987655443
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.81 E-value=5.9 Score=41.15 Aligned_cols=32 Identities=13% Similarity=0.244 Sum_probs=24.5
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCc
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI 169 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~ 169 (789)
.|+++.+||.+..|+.+. =. ..++++|+.+..
T Consensus 15 ~IS~v~f~~~~~~LLvss-WD----gslrlYdv~~~~ 46 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSS-WD----GSLRLYDVPANS 46 (323)
T ss_pred ceeeEEEcCcCCcEEEEe-cc----CcEEEEeccchh
Confidence 478899999999888655 23 368999988763
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.75 E-value=1.3 Score=49.87 Aligned_cols=165 Identities=13% Similarity=0.065 Sum_probs=92.0
Q ss_pred EEEEEEec-CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEE-EecCC-CEEEEEEC
Q 003878 302 IFSGHVTE-DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV-IANDD-TVFTFLTN 378 (789)
Q Consensus 302 ~~~~~~Sp-DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~dG-~~l~~~tn 378 (789)
+..++|.| |-++|++...++ .-.||.+...+++.- +..|...++.+.+..+.. |.|=- +-|+.
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg---~i~lWr~~a~gl~e~--------~~tPe~~lt~h~eKI~slRfHPLAadvLa~--- 695 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDG---QINLWRLTANGLPEN--------EMTPEKILTIHGEKITSLRFHPLAADVLAV--- 695 (1012)
T ss_pred eeecccCCCChHHeeecccCc---eEEEEEeccCCCCcc--------cCCcceeeecccceEEEEEecchhhhHhhh---
Confidence 45778888 788888876433 466777776654311 112222233333322221 33311 11111
Q ss_pred CCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce-eeecccCCee-EEEe
Q 003878 379 KDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL-LHQLPIEIGS-VNAI 456 (789)
Q Consensus 379 ~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~-~~~l~~~~~~-v~~~ 456 (789)
...+..|-+||+.+.+....+..|. ..|.+++|+++++.+++.-.|| .|++++..+++. +++=..+.++ -..+
T Consensus 696 -asyd~Ti~lWDl~~~~~~~~l~gHt--dqIf~~AWSpdGr~~AtVcKDg--~~rVy~Prs~e~pv~Eg~gpvgtRgARi 770 (1012)
T KOG1445|consen 696 -ASYDSTIELWDLANAKLYSRLVGHT--DQIFGIAWSPDGRRIATVCKDG--TLRVYEPRSREQPVYEGKGPVGTRGARI 770 (1012)
T ss_pred -hhccceeeeeehhhhhhhheeccCc--CceeEEEECCCCcceeeeecCc--eEEEeCCCCCCCccccCCCCccCcceeE
Confidence 1235678889998876444566666 4588999999889998888887 788888876653 1111222111 1123
Q ss_pred ecccCCcEEEEEEcCCCCCcEEEEEECCC
Q 003878 457 SARREDSVVFISFTSFLIPGIVYQCNLKT 485 (789)
Q Consensus 457 s~s~d~~~l~~~~ss~~~P~~ly~~dl~t 485 (789)
.|.-|+..++++--.-..-..+..||..+
T Consensus 771 ~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 771 LWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred EEEecCcEEEEecccccchhhhhhhhhhh
Confidence 44456776665433333344666666543
|
|
| >KOG3967 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.24 Score=48.33 Aligned_cols=110 Identities=12% Similarity=0.054 Sum_probs=64.1
Q ss_pred EEEEecCCCCCCCCccEEEEEcCCCCccCC-CCC-------------CHHHHHHHHcCCeEEEEEeecCCCCCChhHHhc
Q 003878 524 MFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSF-------------SVSRTILMRHLGAVFCIANIRGGGEYGEEWHKG 589 (789)
Q Consensus 524 ~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~-------------~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~ 589 (789)
.+|+..++. ...+..++|++||+.-.... +.- -+.+.+..+ .||-|++.|.-- -+.+++.
T Consensus 88 SFiF~s~~~-lt~~~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~-~Gygviv~N~N~----~~kfye~ 161 (297)
T KOG3967|consen 88 SFIFMSEDA-LTNPQKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVA-EGYGVIVLNPNR----ERKFYEK 161 (297)
T ss_pred ceEEEChhH-hcCccceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHH-cCCcEEEeCCch----hhhhhhc
Confidence 345555543 23566799999996432221 110 122334444 788888887531 1223332
Q ss_pred cccc--CCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC
Q 003878 590 GALA--KKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD 641 (789)
Q Consensus 590 ~~~~--~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd 641 (789)
-... .-....+-+..+..+++.. ..+..+++.-||+||++++-++-+.|+
T Consensus 162 k~np~kyirt~veh~~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~ 213 (297)
T KOG3967|consen 162 KRNPQKYIRTPVEHAKYVWKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPD 213 (297)
T ss_pred ccCcchhccchHHHHHHHHHHHhcc--cCcceEEEEEeccCChhHHHHHHhcCC
Confidence 1110 1113345555555555543 467889999999999999999999987
|
|
| >PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.16 Score=56.88 Aligned_cols=141 Identities=16% Similarity=0.093 Sum_probs=78.8
Q ss_pred EEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCC---------C--------HHHHHHHHcCCeEEEE
Q 003878 511 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSF---------S--------VSRTILMRHLGAVFCI 573 (789)
Q Consensus 511 ~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~---------~--------~~~~~~l~~~G~~v~~ 573 (789)
+.+....+ ..+-.|++..++ .....|++|++-||||.+...+. . ..-.+|.. -..++.
T Consensus 16 l~~~~~~~-~~lfyw~~~s~~--~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~--~an~l~ 90 (415)
T PF00450_consen 16 LPVNDNEN-AHLFYWFFESRN--DPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNK--FANLLF 90 (415)
T ss_dssp EEECTTTT-EEEEEEEEE-SS--GGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGG--TSEEEE
T ss_pred EecCCCCC-cEEEEEEEEeCC--CCCCccEEEEecCCceeccccccccccCceEEeeccccccccccccccc--ccceEE
Confidence 44444466 788888776665 24678999999999987653111 0 01123332 356788
Q ss_pred EeecCCCCCChhHHhcccccCCcchHHHHHHHHHH-HHHcCCCCCCcEEEEeeChHHHHHHHHH----HhC------CCc
Q 003878 574 ANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEY-LISAGYTQSRKLCIEGGSNGGLLVGACI----NQR------PDL 642 (789)
Q Consensus 574 ~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~-L~~~~~~d~~~i~i~G~S~GG~l~~~~~----~~~------pd~ 642 (789)
+|..-|.+|...-........-....+|+..+++. +...+....+.+.|.|-|+||..+-.++ .+. +=.
T Consensus 91 iD~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~in 170 (415)
T PF00450_consen 91 IDQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKIN 170 (415)
T ss_dssp E--STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSE
T ss_pred EeecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccc
Confidence 88776666654422221111222334566555554 3344445667899999999997654433 333 224
Q ss_pred eeEEEecCCccccc
Q 003878 643 FGCALAHVGVMDML 656 (789)
Q Consensus 643 f~a~v~~~p~~d~~ 656 (789)
++++++..|++|..
T Consensus 171 LkGi~IGng~~dp~ 184 (415)
T PF00450_consen 171 LKGIAIGNGWIDPR 184 (415)
T ss_dssp EEEEEEESE-SBHH
T ss_pred cccceecCcccccc
Confidence 89999999988874
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A .... |
| >KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=94.61 E-value=1.1 Score=46.26 Aligned_cols=130 Identities=8% Similarity=0.030 Sum_probs=81.6
Q ss_pred EEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCc---cCCCCC-CHHHHHHHHcCCeEEEEEeecCCCCCC
Q 003878 508 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI---SVTPSF-SVSRTILMRHLGAVFCIANIRGGGEYG 583 (789)
Q Consensus 508 ~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~---~~~~~~-~~~~~~~l~~~G~~v~~~~~RG~g~~g 583 (789)
+++..+.+.-| .|++.++-- ++++.|++|..|.-.-. .....| .+....++. + +.+.-++..|.-+--
T Consensus 22 ~~e~~V~T~~G--~v~V~V~Gd----~~~~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~-~-fcv~HV~~PGqe~gA 93 (326)
T KOG2931|consen 22 CQEHDVETAHG--VVHVTVYGD----PKGNKPAIITYHDLGLNHKSCFQGFFNFPDMAEILE-H-FCVYHVDAPGQEDGA 93 (326)
T ss_pred ceeeeeccccc--cEEEEEecC----CCCCCceEEEecccccchHhHhHHhhcCHhHHHHHh-h-eEEEecCCCccccCC
Confidence 34444555557 466665532 23467889999984222 122333 344556665 5 888888888743211
Q ss_pred hhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 584 EEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 584 ~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
+.+ .....-.+.+|+.+-+-.+.+. ..-+-|..+|--+|+++-...|..+|++.-+.|+..+
T Consensus 94 p~~----p~~y~yPsmd~LAd~l~~VL~~--f~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~ 155 (326)
T KOG2931|consen 94 PSF----PEGYPYPSMDDLADMLPEVLDH--FGLKSVIGMGVGAGAYILARFALNHPERVLGLVLINC 155 (326)
T ss_pred ccC----CCCCCCCCHHHHHHHHHHHHHh--cCcceEEEecccccHHHHHHHHhcChhheeEEEEEec
Confidence 111 1122234567766666665554 2235799999999999999999999999999998765
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.58 E-value=1.5 Score=46.36 Aligned_cols=139 Identities=12% Similarity=0.076 Sum_probs=79.1
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCC
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDA 381 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~ 381 (789)
+..+.++|-...|+.++.. ...|+++|+..+ .|+.+++-.....--.|.|.+ ..++..|+
T Consensus 190 i~svkfNpvETsILas~~s----DrsIvLyD~R~~-------------~Pl~KVi~~mRTN~IswnPea-fnF~~a~E-- 249 (433)
T KOG0268|consen 190 ISSVKFNPVETSILASCAS----DRSIVLYDLRQA-------------SPLKKVILTMRTNTICWNPEA-FNFVAANE-- 249 (433)
T ss_pred eeEEecCCCcchheeeecc----CCceEEEecccC-------------CccceeeeeccccceecCccc-cceeeccc--
Confidence 4567788877777665522 345899998873 334444432222223488832 33333333
Q ss_pred CCceEEEEECCCCCCeEEeccCCC-CceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC--CeeEEEeec
Q 003878 382 PKYKIIRVDLKEPNDWFEVIPEAE-RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAISA 458 (789)
Q Consensus 382 ~~~~L~~~dl~~~~~~~~l~~~~~-~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~--~~~v~~~s~ 458 (789)
+..||..|+..-+ +++--+.+ ...+.++.+++-+.=+++++-|- .|+++....|.. +.+--. .-.|..+.+
T Consensus 250 -D~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk--sIRIf~~~~~~S-RdiYhtkRMq~V~~Vk~ 323 (433)
T KOG0268|consen 250 -DHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK--SIRIFPVNHGHS-RDIYHTKRMQHVFCVKY 323 (433)
T ss_pred -cccceehhhhhhc--ccchhhcccceeEEEeccCCCcchhccccccc--eEEEeecCCCcc-hhhhhHhhhheeeEEEE
Confidence 4789999986644 22222222 23456777777556566666554 577777765554 444322 334556778
Q ss_pred ccCCcEEE
Q 003878 459 RREDSVVF 466 (789)
Q Consensus 459 s~d~~~l~ 466 (789)
|-|++.++
T Consensus 324 S~Dskyi~ 331 (433)
T KOG0268|consen 324 SMDSKYII 331 (433)
T ss_pred eccccEEE
Confidence 88887443
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.54 E-value=4.7 Score=42.69 Aligned_cols=179 Identities=15% Similarity=0.107 Sum_probs=104.7
Q ss_pred ccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccE
Q 003878 274 YHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV 353 (789)
Q Consensus 274 ~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 353 (789)
...+.+|++.+++-+ ...+.+-....++++|+---||+-... ...|-.+|++..+ ..+
T Consensus 172 DrtikIwDlatg~Lk----ltltGhi~~vr~vavS~rHpYlFs~ge-----dk~VKCwDLe~nk-------------vIR 229 (460)
T KOG0285|consen 172 DRTIKIWDLATGQLK----LTLTGHIETVRGVAVSKRHPYLFSAGE-----DKQVKCWDLEYNK-------------VIR 229 (460)
T ss_pred CceeEEEEcccCeEE----EeecchhheeeeeeecccCceEEEecC-----CCeeEEEechhhh-------------hHH
Confidence 346889999987533 223333444678899998888865442 2457888988632 011
Q ss_pred eeeccccceeEE-EecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEE
Q 003878 354 KLIDGFDAQYEV-IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVL 432 (789)
Q Consensus 354 ~l~~~~~~~~~~-~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L 432 (789)
.--......+.. .-|.- .+++...+ +..+-++|+.+......+..+. ..+..+...+-+--+++.+.|+ .|
T Consensus 230 ~YhGHlS~V~~L~lhPTl-dvl~t~gr---Dst~RvWDiRtr~~V~~l~GH~--~~V~~V~~~~~dpqvit~S~D~--tv 301 (460)
T KOG0285|consen 230 HYHGHLSGVYCLDLHPTL-DVLVTGGR---DSTIRVWDIRTRASVHVLSGHT--NPVASVMCQPTDPQVITGSHDS--TV 301 (460)
T ss_pred HhccccceeEEEeccccc-eeEEecCC---cceEEEeeecccceEEEecCCC--CcceeEEeecCCCceEEecCCc--eE
Confidence 111111112222 22322 23333333 4567778888765444454444 4566666665345566677775 79
Q ss_pred EEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 433 QIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 433 ~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.+||+..|+....++...-++..+...|....++ | ..|..+-.+++..|+
T Consensus 302 rlWDl~agkt~~tlt~hkksvral~lhP~e~~fA----S-as~dnik~w~~p~g~ 351 (460)
T KOG0285|consen 302 RLWDLRAGKTMITLTHHKKSVRALCLHPKENLFA----S-ASPDNIKQWKLPEGE 351 (460)
T ss_pred EEeeeccCceeEeeecccceeeEEecCCchhhhh----c-cCCccceeccCCccc
Confidence 9999998987667776667777777777654222 1 345666677776664
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.52 E-value=9 Score=44.33 Aligned_cols=174 Identities=13% Similarity=0.079 Sum_probs=92.9
Q ss_pred cEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEe
Q 003878 275 HEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK 354 (789)
Q Consensus 275 ~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 354 (789)
.++++|+..++...- ++... ...+ ...+-++-.+ ... .....|.++++.++. ...
T Consensus 271 ~t~rvWd~~sg~C~~--~l~gh--~stv--~~~~~~~~~~-~sg----s~D~tVkVW~v~n~~--------------~l~ 325 (537)
T KOG0274|consen 271 KTERVWDCSTGECTH--SLQGH--TSSV--RCLTIDPFLL-VSG----SRDNTVKVWDVTNGA--------------CLN 325 (537)
T ss_pred CcEEeEecCCCcEEE--EecCC--CceE--EEEEccCceE-eec----cCCceEEEEeccCcc--------------eEE
Confidence 458888887765432 22222 1111 1223333333 221 124678899988742 222
Q ss_pred eeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEE
Q 003878 355 LIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 355 l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~ 434 (789)
+..+.......+.-++..++..+- ++.|.++++..++-.+.+..|. ..+.++.+.. ...+++..-|+ .|.+
T Consensus 326 l~~~h~~~V~~v~~~~~~lvsgs~----d~~v~VW~~~~~~cl~sl~gH~--~~V~sl~~~~-~~~~~Sgs~D~--~Ikv 396 (537)
T KOG0274|consen 326 LLRGHTGPVNCVQLDEPLLVSGSY----DGTVKVWDPRTGKCLKSLSGHT--GRVYSLIVDS-ENRLLSGSLDT--TIKV 396 (537)
T ss_pred EeccccccEEEEEecCCEEEEEec----CceEEEEEhhhceeeeeecCCc--ceEEEEEecC-cceEEeeeecc--ceEe
Confidence 333221122223345666654332 3478888888776455555554 4566775543 26667777764 7999
Q ss_pred EECCCC-ceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCc
Q 003878 435 RDLKNG-SLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETP 488 (789)
Q Consensus 435 ~dl~tG-~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~ 488 (789)
||+.++ +....+..+...+..+.. .++. ++ |-.-.+++..||..++++
T Consensus 397 Wdl~~~~~c~~tl~~h~~~v~~l~~--~~~~-Lv---s~~aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 397 WDLRTKRKCIHTLQGHTSLVSSLLL--RDNF-LV---SSSADGTIKLWDAEEGEC 445 (537)
T ss_pred ecCCchhhhhhhhcCCccccccccc--ccce-eE---eccccccEEEeecccCce
Confidence 999876 444445444444433322 2332 22 223445889999988873
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=94.45 E-value=5.6 Score=41.01 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=36.0
Q ss_pred EEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCc
Q 003878 107 LYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI 169 (789)
Q Consensus 107 ~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~ 169 (789)
|=.|...|+-..++=-+ ...+|..-+...++||||+..|||+.+ + .+|+++|+.+.+
T Consensus 20 iEiRsa~Ddf~si~~kc-qVpkD~~PQWRkl~WSpD~tlLa~a~S-~----G~i~vfdl~g~~ 76 (282)
T PF15492_consen 20 IEIRSAKDDFSSIIGKC-QVPKDPNPQWRKLAWSPDCTLLAYAES-T----GTIRVFDLMGSE 76 (282)
T ss_pred EEEEeccCCchheeEEE-ecCCCCCchheEEEECCCCcEEEEEcC-C----CeEEEEecccce
Confidence 55566555332222111 223343345678899999999999876 3 379999998653
|
|
| >PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.17 Score=51.94 Aligned_cols=112 Identities=15% Similarity=0.110 Sum_probs=64.1
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCe--EEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGA--VFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG 613 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~--~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~ 613 (789)
.+..++||+||- ......... ...++....|+ .++.+.....|..- .|..+ ......+-.++...++.|.+.
T Consensus 16 ~~~~vlvfVHGy-n~~f~~a~~-r~aql~~~~~~~~~~i~FsWPS~g~~~-~Y~~d--~~~a~~s~~~l~~~L~~L~~~- 89 (233)
T PF05990_consen 16 PDKEVLVFVHGY-NNSFEDALR-RAAQLAHDLGFPGVVILFSWPSDGSLL-GYFYD--RESARFSGPALARFLRDLARA- 89 (233)
T ss_pred CCCeEEEEEeCC-CCCHHHHHH-HHHHHHHHhCCCceEEEEEcCCCCChh-hhhhh--hhhHHHHHHHHHHHHHHHHhc-
Confidence 466899999994 433222111 11233333333 78888888765421 12221 112223345566666666665
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHhC----C-----CceeEEEecCCccc
Q 003878 614 YTQSRKLCIEGGSNGGLLVGACINQR----P-----DLFGCALAHVGVMD 654 (789)
Q Consensus 614 ~~d~~~i~i~G~S~GG~l~~~~~~~~----p-----d~f~a~v~~~p~~d 654 (789)
....+|-|++||||+.+++.++.+- + ..|..+|+.+|-+|
T Consensus 90 -~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid 138 (233)
T PF05990_consen 90 -PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDID 138 (233)
T ss_pred -cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCC
Confidence 3457999999999999988876542 1 24556666666444
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.40 E-value=1.4 Score=44.17 Aligned_cols=78 Identities=15% Similarity=0.169 Sum_probs=50.2
Q ss_pred eeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 409 LESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 409 i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
|.++.+.+ .+.+++.. |...+|.+|+++|+..+.+..+...+..+.......+++ |-..-+++..||.+|++
T Consensus 117 INam~ldP~enSi~~Ag---GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qil----sG~EDGtvRvWd~kt~k 189 (325)
T KOG0649|consen 117 INAMWLDPSENSILFAG---GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQIL----SGAEDGTVRVWDTKTQK 189 (325)
T ss_pred cceeEeccCCCcEEEec---CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCccee----ecCCCccEEEEeccccc
Confidence 34555554 25666655 445899999999998677766655565554433333444 34567899999999987
Q ss_pred ceEEEee
Q 003878 488 PEMKIFR 494 (789)
Q Consensus 488 ~~~~~l~ 494 (789)
..+.+.
T Consensus 190 -~v~~ie 195 (325)
T KOG0649|consen 190 -HVSMIE 195 (325)
T ss_pred -eeEEec
Confidence 344443
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.37 E-value=1.8 Score=44.89 Aligned_cols=148 Identities=12% Similarity=0.036 Sum_probs=83.6
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCC
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDT 371 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~ 371 (789)
|..+.+...+..++. +|.|++-.++ ...|+++|+.... ....+....+... ..|.++-.
T Consensus 37 F~~~aH~~sitavAV--s~~~~aSGss-----DetI~IYDm~k~~-------------qlg~ll~HagsitaL~F~~~~S 96 (362)
T KOG0294|consen 37 FAFSAHAGSITALAV--SGPYVASGSS-----DETIHIYDMRKRK-------------QLGILLSHAGSITALKFYPPLS 96 (362)
T ss_pred ccccccccceeEEEe--cceeEeccCC-----CCcEEEEeccchh-------------hhcceeccccceEEEEecCCcc
Confidence 333333333444444 6888875443 3558999987632 1122222211111 11333221
Q ss_pred --EEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC
Q 003878 372 --VFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE 449 (789)
Q Consensus 372 --~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~ 449 (789)
+|+ ..+.+++|+.++...-.....+-++. ..+.++++.|.++|.++...|+ .|..||+-.|+.-..+.+.
T Consensus 97 ~shLl----S~sdDG~i~iw~~~~W~~~~slK~H~--~~Vt~lsiHPS~KLALsVg~D~--~lr~WNLV~Gr~a~v~~L~ 168 (362)
T KOG0294|consen 97 KSHLL----SGSDDGHIIIWRVGSWELLKSLKAHK--GQVTDLSIHPSGKLALSVGGDQ--VLRTWNLVRGRVAFVLNLK 168 (362)
T ss_pred hhhee----eecCCCcEEEEEcCCeEEeeeecccc--cccceeEecCCCceEEEEcCCc--eeeeehhhcCccceeeccC
Confidence 333 13457889999976422122333454 3378899988788998887776 7889999878753444443
Q ss_pred CeeEEEeecccCCcEEEEEE
Q 003878 450 IGSVNAISARREDSVVFISF 469 (789)
Q Consensus 450 ~~~v~~~s~s~d~~~l~~~~ 469 (789)
.. .+.+.|++.|+++++..
T Consensus 169 ~~-at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 169 NK-ATLVSWSPQGDHFVVSG 187 (362)
T ss_pred Cc-ceeeEEcCCCCEEEEEe
Confidence 21 23477889998777643
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.32 E-value=2.7 Score=43.78 Aligned_cols=204 Identities=16% Similarity=0.127 Sum_probs=109.5
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEEC-CCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFL-GTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l-g~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..-+|++|+..|+.+.... ++.++.. +.+.=+ ......+++..+..+.|+|.+..|+-
T Consensus 14 tchAwn~drt~iAv~~~~~-------------------evhiy~~~~~~~w~--~~htls~Hd~~vtgvdWap~snrIvt 72 (361)
T KOG1523|consen 14 TCHAWNSDRTQIAVSPNNH-------------------EVHIYSMLGADLWE--PAHTLSEHDKIVTGVDWAPKSNRIVT 72 (361)
T ss_pred eeeeecCCCceEEeccCCc-------------------eEEEEEecCCCCce--eceehhhhCcceeEEeecCCCCceeE
Confidence 5679999999999875432 2333332 222112 12222344555667999999999987
Q ss_pred EEEcCCCCceEEEEEEC-CCCCCCcccccccCCCCccEeeec-cccceeEEEecCCCEEEEEECCCCCCceEEEEECCCC
Q 003878 317 CIEENCDPVNKVYYCDL-SALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 394 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~ 394 (789)
.+.+++ -|++.. ++++ .++...+.. ...+....|+|.+..|++-+. .-.|-++=.++.
T Consensus 73 cs~drn-----ayVw~~~~~~~-----------WkptlvLlRiNrAAt~V~WsP~enkFAVgSg----ar~isVcy~E~E 132 (361)
T KOG1523|consen 73 CSHDRN-----AYVWTQPSGGT-----------WKPTLVLLRINRAATCVKWSPKENKFAVGSG----ARLISVCYYEQE 132 (361)
T ss_pred ccCCCC-----ccccccCCCCe-----------eccceeEEEeccceeeEeecCcCceEEeccC----ccEEEEEEEecc
Confidence 665432 355544 3321 122111211 223334559999888876332 123333444443
Q ss_pred CCeE--EeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEE---EECCCCce----eeeccc--------C-CeeEEEe
Q 003878 395 NDWF--EVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQI---RDLKNGSL----LHQLPI--------E-IGSVNAI 456 (789)
Q Consensus 395 ~~~~--~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~---~dl~tG~~----~~~l~~--------~-~~~v~~~ 456 (789)
++|= ..+...-...+..++|.+++-+++..+-|+.-+++- -+++.... -..+++ . .+-+..+
T Consensus 133 NdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v 212 (361)
T KOG1523|consen 133 NDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGV 212 (361)
T ss_pred cceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeee
Confidence 3341 111111124577899998777888888887665543 33331100 011222 1 2446678
Q ss_pred ecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 457 SARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 457 s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
.+++.|+.|.+.. .+..+...|....
T Consensus 213 ~fs~sG~~lawv~----Hds~v~~~da~~p 238 (361)
T KOG1523|consen 213 LFSPSGNRLAWVG----HDSTVSFVDAAGP 238 (361)
T ss_pred EeCCCCCEeeEec----CCCceEEeecCCC
Confidence 8899999888763 4456666665433
|
|
| >PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics [] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.18 Score=51.31 Aligned_cols=84 Identities=15% Similarity=0.087 Sum_probs=52.1
Q ss_pred cEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHH-HHHHHHcCCCCC
Q 003878 539 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISA-SEYLISAGYTQS 617 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~-~~~L~~~~~~d~ 617 (789)
+.|+++|++.|. ...|. .+...+...++.|..+..+|-+. ......+++++.+. ++.+.+. .|
T Consensus 1 ~~lf~~p~~gG~--~~~y~-~la~~l~~~~~~v~~i~~~~~~~----------~~~~~~si~~la~~y~~~I~~~---~~ 64 (229)
T PF00975_consen 1 RPLFCFPPAGGS--ASSYR-PLARALPDDVIGVYGIEYPGRGD----------DEPPPDSIEELASRYAEAIRAR---QP 64 (229)
T ss_dssp -EEEEESSTTCS--GGGGH-HHHHHHTTTEEEEEEECSTTSCT----------TSHEESSHHHHHHHHHHHHHHH---TS
T ss_pred CeEEEEcCCccC--HHHHH-HHHHhCCCCeEEEEEEecCCCCC----------CCCCCCCHHHHHHHHHHHhhhh---CC
Confidence 357788887763 23444 35666662358888888877541 12223455555443 3333333 23
Q ss_pred C-cEEEEeeChHHHHHHHHHHh
Q 003878 618 R-KLCIEGGSNGGLLVGACINQ 638 (789)
Q Consensus 618 ~-~i~i~G~S~GG~l~~~~~~~ 638 (789)
+ .+.++|+|+||.+|..+|.+
T Consensus 65 ~gp~~L~G~S~Gg~lA~E~A~~ 86 (229)
T PF00975_consen 65 EGPYVLAGWSFGGILAFEMARQ 86 (229)
T ss_dssp SSSEEEEEETHHHHHHHHHHHH
T ss_pred CCCeeehccCccHHHHHHHHHH
Confidence 3 89999999999999988765
|
Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A .... |
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.29 E-value=1.5 Score=47.78 Aligned_cols=174 Identities=14% Similarity=0.143 Sum_probs=99.0
Q ss_pred EEEEEECCCCCCCc-EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEe
Q 003878 276 EFYYHFLGTKQSED-ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK 354 (789)
Q Consensus 276 ~i~~~~lg~~~~~~-~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 354 (789)
.|.+|.+....... ..+. |.-+..++-+|+|.+|+.... ...||+|.+.+|. .+..
T Consensus 62 ~l~vw~i~k~~~~~q~~v~-----Pg~v~al~s~n~G~~l~ag~i-----~g~lYlWelssG~-------------LL~v 118 (476)
T KOG0646|consen 62 LLHVWEILKKDQVVQYIVL-----PGPVHALASSNLGYFLLAGTI-----SGNLYLWELSSGI-------------LLNV 118 (476)
T ss_pred cccccccCchhhhhhhccc-----ccceeeeecCCCceEEEeecc-----cCcEEEEEecccc-------------HHHH
Confidence 57777776543222 1111 222446788999999987643 3459999999863 1222
Q ss_pred eeccccceeE-EEecCCCEEEEEECCCCCCceEEEEECCC---CC---C--eEEeccCCCCceeeeEEEecC--CEEEEE
Q 003878 355 LIDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRVDLKE---PN---D--WFEVIPEAERDVLESATAVNL--NQMIVS 423 (789)
Q Consensus 355 l~~~~~~~~~-~~s~dG~~l~~~tn~~~~~~~L~~~dl~~---~~---~--~~~l~~~~~~~~i~~v~~~~~--~~lv~~ 423 (789)
+...+..... .++.||.+|+-- +.++.|..|.+.. .. . ..-.+.+ ..-.+.++.+..+ +..+++
T Consensus 119 ~~aHYQ~ITcL~fs~dgs~iiTg----skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~-HtlsITDl~ig~Gg~~~rl~T 193 (476)
T KOG0646|consen 119 LSAHYQSITCLKFSDDGSHIITG----SKDGAVLVWLLTDLVSADNDHSVKPLHIFSD-HTLSITDLQIGSGGTNARLYT 193 (476)
T ss_pred HHhhccceeEEEEeCCCcEEEec----CCCccEEEEEEEeecccccCCCccceeeecc-CcceeEEEEecCCCccceEEE
Confidence 2334433322 378888876632 2345566665421 11 0 1111111 1245667766653 345566
Q ss_pred EEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 424 YLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 424 ~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
.+.|. .+.+||+..|..+..+.+| ..+.++..+|.+..+++. +.-+.++..++.
T Consensus 194 aS~D~--t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yiG----t~~G~I~~~~~~ 247 (476)
T KOG0646|consen 194 ASEDR--TIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYIG----TEEGKIFQNLLF 247 (476)
T ss_pred ecCCc--eEEEEEeccceeeEEEecC-CcceeEEEcccccEEEec----CCcceEEeeehh
Confidence 66664 6888999888876677766 345567788887776654 334566666653
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.05 E-value=7.7 Score=39.34 Aligned_cols=224 Identities=11% Similarity=0.054 Sum_probs=123.5
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.+-.++||+...-++++..-.| .+++||+.-. ..|.. +|.+|..
T Consensus 62 ~LfdV~Wse~~e~~~~~a~GDG----SLrl~d~~~~-s~Pi~------~~kEH~~------------------------- 105 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASGDG----SLRLFDLTMP-SKPIH------KFKEHKR------------------------- 105 (311)
T ss_pred ceeEeeecCCCcceEEEEecCc----eEEEeccCCC-Ccchh------HHHhhhh-------------------------
Confidence 3567889999999998887555 6999994322 21211 1222211
Q ss_pred eeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 292 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~ 292 (789)
.+.++.|.+-.+.++.+.. -...|.+|+..-+++ +..
T Consensus 106 -----------------------EV~Svdwn~~~r~~~ltsS------------------WD~TiKLW~~~r~~S--v~T 142 (311)
T KOG0277|consen 106 -----------------------EVYSVDWNTVRRRIFLTSS------------------WDGTIKLWDPNRPNS--VQT 142 (311)
T ss_pred -----------------------heEEeccccccceeEEeec------------------cCCceEeecCCCCcc--eEe
Confidence 3578889887777777642 123466665443332 344
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCE
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTV 372 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~ 372 (789)
|.+. ...+....|||--.-++.+++. ...+.++|+... ++...-......+--..|++....
T Consensus 143 f~gh--~~~Iy~a~~sp~~~nlfas~Sg----d~~l~lwdvr~~------------gk~~~i~ah~~Eil~cdw~ky~~~ 204 (311)
T KOG0277|consen 143 FNGH--NSCIYQAAFSPHIPNLFASASG----DGTLRLWDVRSP------------GKFMSIEAHNSEILCCDWSKYNHN 204 (311)
T ss_pred ecCC--ccEEEEEecCCCCCCeEEEccC----CceEEEEEecCC------------CceeEEEeccceeEeecccccCCc
Confidence 5543 3456688999977767665542 234556666541 111211111122222348876666
Q ss_pred EEEEECCCCCCceEEEEECCCCC-CeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCc-eeeecccC
Q 003878 373 FTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGS-LLHQLPIE 449 (789)
Q Consensus 373 l~~~tn~~~~~~~L~~~dl~~~~-~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~-~~~~l~~~ 449 (789)
++++.. .+.-|..+|+..-. ...+|..+. -.+..+.+++. ..++++.+-|- .+++||+..+. .++....+
T Consensus 205 vl~Tg~---vd~~vr~wDir~~r~pl~eL~gh~--~AVRkvk~Sph~~~lLaSasYDm--T~riw~~~~~ds~~e~~~~H 277 (311)
T KOG0277|consen 205 VLATGG---VDNLVRGWDIRNLRTPLFELNGHG--LAVRKVKFSPHHASLLASASYDM--TVRIWDPERQDSAIETVDHH 277 (311)
T ss_pred EEEecC---CCceEEEEehhhccccceeecCCc--eEEEEEecCcchhhHhhhccccc--eEEecccccchhhhhhhhcc
Confidence 665443 34678888886643 233443333 55778888873 34777777665 45667765332 22344434
Q ss_pred CeeEEEeeccc
Q 003878 450 IGSVNAISARR 460 (789)
Q Consensus 450 ~~~v~~~s~s~ 460 (789)
..-+.++.++.
T Consensus 278 tEFv~g~Dws~ 288 (311)
T KOG0277|consen 278 TEFVCGLDWSL 288 (311)
T ss_pred ceEEecccccc
Confidence 33344555553
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.01 E-value=1.4 Score=47.03 Aligned_cols=150 Identities=10% Similarity=0.022 Sum_probs=84.0
Q ss_pred cEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccc
Q 003878 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 131 ~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
.-.++-+.|.|-..-+..+. |. .++|.+||+.||+.+- ++.. |+
T Consensus 131 ~rrVg~V~wHPtA~NVLlsa---g~-Dn~v~iWnv~tgeali-~l~h----------------------pd--------- 174 (472)
T KOG0303|consen 131 QRRVGLVQWHPTAPNVLLSA---GS-DNTVSIWNVGTGEALI-TLDH----------------------PD--------- 174 (472)
T ss_pred ceeEEEEeecccchhhHhhc---cC-CceEEEEeccCCceee-ecCC----------------------CC---------
Confidence 34577778888766655432 22 5799999999997653 2221 11
Q ss_pred ceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcE
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDI 290 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~ 290 (789)
...++.|+-||..|+-+..+ .+|++++..++.
T Consensus 175 -------------------------~i~S~sfn~dGs~l~TtckD-------------------KkvRv~dpr~~~---- 206 (472)
T KOG0303|consen 175 -------------------------MVYSMSFNRDGSLLCTTCKD-------------------KKVRVIDPRRGT---- 206 (472)
T ss_pred -------------------------eEEEEEeccCCceeeeeccc-------------------ceeEEEcCCCCc----
Confidence 24788999999998866543 357777766542
Q ss_pred EEEecCCCCee-EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecC
Q 003878 291 LCWKDPEHPKY-IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND 369 (789)
Q Consensus 291 ~~~~~~~~~~~-~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~d 369 (789)
++.+...+... -..+-|-.+|+ ++-+...+. ....+-++|.+... ++..+..+-...+.-.++|.+|
T Consensus 207 ~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~-seRq~aLwdp~nl~----------eP~~~~elDtSnGvl~PFyD~d 274 (472)
T KOG0303|consen 207 VVSEGVAHEGAKPARAIFLASGK-IFTTGFSRM-SERQIALWDPNNLE----------EPIALQELDTSNGVLLPFYDPD 274 (472)
T ss_pred EeeecccccCCCcceeEEeccCc-eeeeccccc-cccceeccCccccc----------CcceeEEeccCCceEEeeecCC
Confidence 34333222111 12355677888 433322221 23445566655421 1333444433334456778887
Q ss_pred CCEEEEE
Q 003878 370 DTVFTFL 376 (789)
Q Consensus 370 G~~l~~~ 376 (789)
.+.+|+.
T Consensus 275 t~ivYl~ 281 (472)
T KOG0303|consen 275 TSIVYLC 281 (472)
T ss_pred CCEEEEE
Confidence 6666654
|
|
| >PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.14 Score=52.05 Aligned_cols=74 Identities=19% Similarity=0.214 Sum_probs=46.3
Q ss_pred eecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC----CceeEEEec
Q 003878 575 NIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRP----DLFGCALAH 649 (789)
Q Consensus 575 ~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p----d~f~a~v~~ 649 (789)
=+||.......|.+........ ...-...|++||.+.--..++.|.+.|||-||.+|..++...+ +++..+.+.
T Consensus 42 aFRGTd~t~~~W~ed~~~~~~~-~~~~q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~f 119 (224)
T PF11187_consen 42 AFRGTDDTLVDWKEDFNMSFQD-ETPQQKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSF 119 (224)
T ss_pred EEECCCCchhhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEe
Confidence 4677755566787765443321 1223356666665442223456999999999999998888744 355566544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.87 E-value=6.8 Score=44.45 Aligned_cols=137 Identities=9% Similarity=-0.049 Sum_probs=73.6
Q ss_pred EEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEee
Q 003878 276 EFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL 355 (789)
Q Consensus 276 ~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l 355 (789)
.|.+|+....=. -..+|++. ..|+..+++.|...--+.++.- ...|-++.+... .+.-.+
T Consensus 120 ~iKlW~we~~wa-~~qtfeGH--~HyVMqv~fnPkD~ntFaS~sL----DrTVKVWslgs~-------------~~nfTl 179 (794)
T KOG0276|consen 120 TIKLWDWENEWA-CEQTFEGH--EHYVMQVAFNPKDPNTFASASL----DRTVKVWSLGSP-------------HPNFTL 179 (794)
T ss_pred EEEEeeccCcee-eeeEEcCc--ceEEEEEEecCCCccceeeeec----cccEEEEEcCCC-------------CCceee
Confidence 456666543322 23466654 5678899999855444433321 233666666542 112222
Q ss_pred ecc-ccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEE
Q 003878 356 IDG-FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 356 ~~~-~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~ 434 (789)
... .+..+..+-+-|+.=|+++.. ++.-|..+|..+..-.++|-.|. ..+..+.+.+.--++++.++||. +++
T Consensus 180 ~gHekGVN~Vdyy~~gdkpylIsga--DD~tiKvWDyQtk~CV~TLeGHt--~Nvs~v~fhp~lpiiisgsEDGT--vri 253 (794)
T KOG0276|consen 180 EGHEKGVNCVDYYTGGDKPYLISGA--DDLTIKVWDYQTKSCVQTLEGHT--NNVSFVFFHPELPIIISGSEDGT--VRI 253 (794)
T ss_pred eccccCcceEEeccCCCcceEEecC--CCceEEEeecchHHHHHHhhccc--ccceEEEecCCCcEEEEecCCcc--EEE
Confidence 221 111222233445555555543 45678888987765334443343 56677777764568899999984 555
Q ss_pred EECC
Q 003878 435 RDLK 438 (789)
Q Consensus 435 ~dl~ 438 (789)
|.-.
T Consensus 254 Whs~ 257 (794)
T KOG0276|consen 254 WNSK 257 (794)
T ss_pred ecCc
Confidence 5443
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.72 E-value=8.2 Score=45.68 Aligned_cols=218 Identities=9% Similarity=0.056 Sum_probs=121.0
Q ss_pred Eeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCC
Q 003878 217 LFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ 286 (789)
Q Consensus 217 ~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~ 286 (789)
..+|-.+|..|+|...| .-.+.++.|.|+.- ||++ .+..++|.+|+..+
T Consensus 24 ILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qp-lFVS------------------GGDDykIkVWnYk~-- 82 (1202)
T KOG0292|consen 24 ILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQP-LFVS------------------GGDDYKIKVWNYKT-- 82 (1202)
T ss_pred EEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCC-eEEe------------------cCCccEEEEEeccc--
Confidence 45667999999999888 22246788988764 4455 33456788888754
Q ss_pred CCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee---
Q 003878 287 SEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY--- 363 (789)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 363 (789)
...+|....+-.|+..+.|.+.=-||+-.+. ...|.+++..+++ .+..++. .. .|
T Consensus 83 --rrclftL~GHlDYVRt~~FHheyPWIlSASD-----DQTIrIWNwqsr~-------------~iavltG-Hn-HYVMc 140 (1202)
T KOG0292|consen 83 --RRCLFTLLGHLDYVRTVFFHHEYPWILSASD-----DQTIRIWNWQSRK-------------CIAVLTG-HN-HYVMC 140 (1202)
T ss_pred --ceehhhhccccceeEEeeccCCCceEEEccC-----CCeEEEEeccCCc-------------eEEEEec-Cc-eEEEe
Confidence 3566766667778888888888888764432 3457777776632 2222332 22 22
Q ss_pred EEEecCCCEEEEEECCCCCCceEEEEECCCCC----------------C-eEEeccCC----------CCceeeeEEEec
Q 003878 364 EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN----------------D-WFEVIPEA----------ERDVLESATAVN 416 (789)
Q Consensus 364 ~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~----------------~-~~~l~~~~----------~~~~i~~v~~~~ 416 (789)
+.|.|.. .+++....+ ..|-+||+.+-. . -..|++.. .+.-+.-+++.+
T Consensus 141 AqFhptE-DlIVSaSLD---QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp 216 (1202)
T KOG0292|consen 141 AQFHPTE-DLIVSASLD---QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP 216 (1202)
T ss_pred eccCCcc-ceEEEeccc---ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence 2255533 344444333 346666654310 0 01122211 112222234444
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCcee--eecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 417 LNQMIVSYLSDVKYVLQIRDLKNGSLL--HQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 417 ~~~lv~~~~~~g~~~L~~~dl~tG~~~--~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.--+++++.+|-.-.+|+++-. +.. ...-.+...|+++-+.|..+. +++ -..-.++..||+...+
T Consensus 217 TlpliVSG~DDRqVKlWrmnet--KaWEvDtcrgH~nnVssvlfhp~q~l-IlS---nsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 217 TLPLIVSGADDRQVKLWRMNET--KAWEVDTCRGHYNNVSSVLFHPHQDL-ILS---NSEDKSIRVWDMTKRT 283 (1202)
T ss_pred CcceEEecCCcceeeEEEeccc--cceeehhhhcccCCcceEEecCccce-eEe---cCCCccEEEEeccccc
Confidence 3358888888875566666542 221 111223445666666665553 333 2455678888887664
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.65 E-value=22 Score=43.17 Aligned_cols=69 Identities=16% Similarity=0.127 Sum_probs=40.1
Q ss_pred CEEEEEEEeCC-eEEEEEEECCCCceeeecccCCeeEEE-eecccCCcEEEEEEcCC-CCCcEEEEEECCCC
Q 003878 418 NQMIVSYLSDV-KYVLQIRDLKNGSLLHQLPIEIGSVNA-ISARREDSVVFISFTSF-LIPGIVYQCNLKTE 486 (789)
Q Consensus 418 ~~lv~~~~~~g-~~~L~~~dl~tG~~~~~l~~~~~~v~~-~s~s~d~~~l~~~~ss~-~~P~~ly~~dl~tg 486 (789)
..+++....++ ..++..+....+.....++.+...+.. +..+.+++.++|....- -.-..+|.+++.+.
T Consensus 353 ~~~~~~~~~~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~ 424 (755)
T KOG2100|consen 353 SYLKVDSVSDGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISLGSG 424 (755)
T ss_pred ceeEEEeeccCCEEEEEEEEcCCCCccccccccceEEEEeccccCCCceEEEEecCCCCCceEEEEEEcccc
Confidence 44555555555 677877777655444566666555532 33455677777765432 23345666666555
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.63 E-value=19 Score=42.75 Aligned_cols=122 Identities=12% Similarity=0.007 Sum_probs=64.8
Q ss_pred eeEEEEEEecCCcEEEEEEEcCC---CCceEEEEEECCCCCCCcccccccCCCCccEeeecc--ccceeEEEecCCCEEE
Q 003878 300 KYIFSGHVTEDGQYLVMCIEENC---DPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG--FDAQYEVIANDDTVFT 374 (789)
Q Consensus 300 ~~~~~~~~SpDG~~l~~~~~~~~---~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~s~dG~~l~ 374 (789)
..+..+.+.+||+.+++...... .....+++++.+.+... ... ...+ .........-++..++
T Consensus 216 ~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----------~~~-~~~~~~~~~~~~~~~~~~~~~~ 283 (620)
T COG1506 216 GSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVD-----------GDL-SSGDDTRGAWAVEGGLDGDGLL 283 (620)
T ss_pred ceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccc-----------eee-ccCCcccCcHHhccccCCCcEE
Confidence 34567889999998887765443 22345666663332100 000 0000 0000011123566777
Q ss_pred EEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCC-eEEEEEEEC
Q 003878 375 FLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV-KYVLQIRDL 437 (789)
Q Consensus 375 ~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g-~~~L~~~dl 437 (789)
+.+....+...++..+..+.. ..+.. .+...+.++.+.. +.+++..+... .+++++++.
T Consensus 284 ~~~~~~~g~~~l~~~~~~~~~--~~~~~-~~~~~v~~f~~~~-~~~~~~~s~~~~p~~i~~~~~ 343 (620)
T COG1506 284 FIATDGGGSSPLFRVDDLGGG--VEGLS-GDDGGVPGFDVDG-RKLALAYSSPTEPPEIYLYDR 343 (620)
T ss_pred EEEecCCCceEEEEEeccCCc--eeeec-CCCceEEEEeeCC-CEEEEEecCCCCccceEEEcC
Confidence 777664455666666544433 22222 2235677777744 67777776655 668999886
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.58 E-value=16 Score=41.56 Aligned_cols=158 Identities=15% Similarity=0.173 Sum_probs=86.5
Q ss_pred cEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEe
Q 003878 275 HEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK 354 (789)
Q Consensus 275 ~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 354 (789)
.+|++++.+|. +.+..|+. |+.|+..++..|.--+++-++ + ...|-++|-+.. .. ...
T Consensus 77 ~~IrVfnynt~--ekV~~FeA--H~DyIR~iavHPt~P~vLtsS-D----Dm~iKlW~we~~------------wa-~~q 134 (794)
T KOG0276|consen 77 MQIRVFNYNTG--EKVKTFEA--HSDYIRSIAVHPTLPYVLTSS-D----DMTIKLWDWENE------------WA-CEQ 134 (794)
T ss_pred ceEEEEecccc--eeeEEeec--cccceeeeeecCCCCeEEecC-C----ccEEEEeeccCc------------ee-eee
Confidence 46888888875 34566664 577888999999888876433 2 244666666552 11 112
Q ss_pred eecccccee---EEEec-CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec-CCE-EEEEEEeCC
Q 003878 355 LIDGFDAQY---EVIAN-DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQ-MIVSYLSDV 428 (789)
Q Consensus 355 l~~~~~~~~---~~~s~-dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~-~~~-lv~~~~~~g 428 (789)
...+.. .| ..+-| |...|+- ... +..|-++.+.++..-.++-.|... +.-+...+ +++ .+++..+|-
T Consensus 135 tfeGH~-HyVMqv~fnPkD~ntFaS-~sL---DrTVKVWslgs~~~nfTl~gHekG--VN~Vdyy~~gdkpylIsgaDD~ 207 (794)
T KOG0276|consen 135 TFEGHE-HYVMQVAFNPKDPNTFAS-ASL---DRTVKVWSLGSPHPNFTLEGHEKG--VNCVDYYTGGDKPYLISGADDL 207 (794)
T ss_pred EEcCcc-eEEEEEEecCCCccceee-eec---cccEEEEEcCCCCCceeeeccccC--cceEEeccCCCcceEEecCCCc
Confidence 222211 12 12455 3344432 112 245666777665423455555533 34444443 233 445555553
Q ss_pred eEEEEEEECCCCceeeecccCCeeEEEeecccCCc
Q 003878 429 KYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDS 463 (789)
Q Consensus 429 ~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~ 463 (789)
.+.+||.++...++.|..+...|+.+.+.|.-.
T Consensus 208 --tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 208 --TIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP 240 (794)
T ss_pred --eEEEeecchHHHHHHhhcccccceEEEecCCCc
Confidence 689999997776677765544455555544433
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=93.52 E-value=10 Score=39.13 Aligned_cols=166 Identities=14% Similarity=0.097 Sum_probs=82.4
Q ss_pred EEECCCCCC---CcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccC-CCCccEe
Q 003878 279 YHFLGTKQS---EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD-GLLPFVK 354 (789)
Q Consensus 279 ~~~lg~~~~---~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~~~ 354 (789)
+|++.++.. +.++|..+. -+..++|+.+|..++.+... ...+.++|+...+-. .-+.++. +..++.+
T Consensus 177 iWdie~~~~~~vkTQLIAHDK----EV~DIaf~~~s~~~FASvga----DGSvRmFDLR~leHS-TIIYE~p~~~~pLlR 247 (364)
T KOG0290|consen 177 IWDIETGVSGTVKTQLIAHDK----EVYDIAFLKGSRDVFASVGA----DGSVRMFDLRSLEHS-TIIYEDPSPSTPLLR 247 (364)
T ss_pred EEEEeeccccceeeEEEecCc----ceeEEEeccCccceEEEecC----CCcEEEEEecccccc-eEEecCCCCCCccee
Confidence 445554432 445665433 35678999999988877643 234777787653210 0011100 0111111
Q ss_pred eeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCC-eEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEE
Q 003878 355 LIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND-WFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVL 432 (789)
Q Consensus 355 l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~-~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L 432 (789)
+. |.+ +...++..-.....+|..+|+.-+.. ..+|--|. ..+.+++|.+. ..-+.+..+| .+.
T Consensus 248 Ls---------wnk--qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~--a~VNgIaWaPhS~~hictaGDD--~qa 312 (364)
T KOG0290|consen 248 LS---------WNK--QDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQ--ASVNGIAWAPHSSSHICTAGDD--CQA 312 (364)
T ss_pred ec---------cCc--CCchHHhhhhcCCceEEEEEecCCCcceehhhcCc--ccccceEecCCCCceeeecCCc--ceE
Confidence 11 222 11222221122346788888877652 22332333 56789999984 3344455555 378
Q ss_pred EEEECCCCceeeecccC------CeeEEEeeccc-CCcEEEEEE
Q 003878 433 QIRDLKNGSLLHQLPIE------IGSVNAISARR-EDSVVFISF 469 (789)
Q Consensus 433 ~~~dl~tG~~~~~l~~~------~~~v~~~s~s~-d~~~l~~~~ 469 (789)
.+||+..- ....+..| .+.|..+.|++ ..+.+.+.+
T Consensus 313 liWDl~q~-~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 313 LIWDLQQM-PRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred EEEecccc-cccCCCCchhhhhccceeeeeeecccCCCEEEEEe
Confidence 88998631 11122222 34566666653 234455444
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.18 Score=35.45 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=20.6
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEE
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYY 330 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~ 330 (789)
...+.|||||++|+|.+........+||+
T Consensus 11 ~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp EEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred ccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 35789999999999999876223566774
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=93.46 E-value=26 Score=43.53 Aligned_cols=115 Identities=9% Similarity=0.093 Sum_probs=67.0
Q ss_pred EEEEEecCCcEEEEEEEcCCCC-ceEEEEEECCCCCCCcccccccCCCCccEee---eccccceeEEEecCCCEEEEEEC
Q 003878 303 FSGHVTEDGQYLVMCIEENCDP-VNKVYYCDLSALPEGLEGFKKRDGLLPFVKL---IDGFDAQYEVIANDDTVFTFLTN 378 (789)
Q Consensus 303 ~~~~~SpDG~~l~~~~~~~~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~s~dG~~l~~~tn 378 (789)
..++|-.||+|++++....... ...+.+++-++ . +... +.+.. ....|.|.|..|+-...
T Consensus 213 ~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG-~--------------L~stSE~v~gLe-~~l~WrPsG~lIA~~q~ 276 (928)
T PF04762_consen 213 VRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG-E--------------LQSTSEPVDGLE-GALSWRPSGNLIASSQR 276 (928)
T ss_pred eEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc-e--------------EEeccccCCCcc-CCccCCCCCCEEEEEEE
Confidence 4689999999999988643322 45566676553 1 1111 11221 12348999987776554
Q ss_pred CCCCCceEEEEECCCCC--CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC
Q 003878 379 KDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 379 ~~~~~~~L~~~dl~~~~--~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~ 438 (789)
...+..|..+.-++-. .+..-. ......+..+.|+.+..+++....+. |.+|...
T Consensus 277 -~~~~~~VvFfErNGLrhgeF~l~~-~~~~~~v~~l~Wn~ds~iLAv~~~~~---vqLWt~~ 333 (928)
T PF04762_consen 277 -LPDRHDVVFFERNGLRHGEFTLRF-DPEEEKVIELAWNSDSEILAVWLEDR---VQLWTRS 333 (928)
T ss_pred -cCCCcEEEEEecCCcEeeeEecCC-CCCCceeeEEEECCCCCEEEEEecCC---ceEEEee
Confidence 3445677777654421 122111 12245678999998766776666553 6666543
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.43 E-value=11 Score=39.03 Aligned_cols=205 Identities=13% Similarity=0.070 Sum_probs=105.0
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCc-EEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQ-YLV 315 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~-~l~ 315 (789)
..++.|-|=..++|.+ +...+.+.+|+..|-+.. ..|.-++ .+.+-++||=.- ..+
T Consensus 104 iss~~WyP~DtGmFts------------------sSFDhtlKVWDtnTlQ~a--~~F~me~---~VYshamSp~a~sHcL 160 (397)
T KOG4283|consen 104 ISSAIWYPIDTGMFTS------------------SSFDHTLKVWDTNTLQEA--VDFKMEG---KVYSHAMSPMAMSHCL 160 (397)
T ss_pred eeeeEEeeecCceeec------------------ccccceEEEeecccceee--EEeecCc---eeehhhcChhhhcceE
Confidence 4778898877777754 456677899998876543 3343322 244567777433 444
Q ss_pred EEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEE-EecCCCEEEEEECCCCCCceEEEEECCCC
Q 003878 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV-IANDDTVFTFLTNKDAPKYKIIRVDLKEP 394 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~dG~~l~~~tn~~~~~~~L~~~dl~~~ 394 (789)
+.+..+ ...|.+.|++.|... -.+....+....+ |+|..++++.... .++.+-.+|+...
T Consensus 161 iA~gtr---~~~VrLCDi~SGs~s-------------H~LsGHr~~vlaV~Wsp~~e~vLatgs---aDg~irlWDiRra 221 (397)
T KOG4283|consen 161 IAAGTR---DVQVRLCDIASGSFS-------------HTLSGHRDGVLAVEWSPSSEWVLATGS---ADGAIRLWDIRRA 221 (397)
T ss_pred EEEecC---CCcEEEEeccCCcce-------------eeeccccCceEEEEeccCceeEEEecC---CCceEEEEEeecc
Confidence 444322 356889999886311 1233333433333 9997665554332 2355666665432
Q ss_pred C-CeEEeccCC------------CCceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCCCceeeeccc-C-------Cee
Q 003878 395 N-DWFEVIPEA------------ERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSLLHQLPI-E-------IGS 452 (789)
Q Consensus 395 ~-~~~~l~~~~------------~~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~-~-------~~~ 452 (789)
. .+..+--+. ....+.+++|+.++ ++..... .+++.+|+...|+. ...+. + .-.
T Consensus 222 sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt---d~r~r~wn~~~G~n-tl~~~g~~~~n~~~~~~ 297 (397)
T KOG4283|consen 222 SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT---DDRIRVWNMESGRN-TLREFGPIIHNQTTSFA 297 (397)
T ss_pred cceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC---ccceEEeecccCcc-cccccccccccccccce
Confidence 1 011111110 01345667777632 2332222 24788898877764 11111 1 001
Q ss_pred EEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEee
Q 003878 453 VNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFR 494 (789)
Q Consensus 453 v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~ 494 (789)
+. +. +-+.+.+.+.- .. +.+++|++-.++ ..+.|.
T Consensus 298 ~~-~~-~~~s~vfv~~p---~~-~~lall~~~sgs-~ir~l~ 332 (397)
T KOG4283|consen 298 VH-IQ-SMDSDVFVLFP---ND-GSLALLNLLEGS-FVRRLS 332 (397)
T ss_pred EE-Ee-ecccceEEEEe---cC-CeEEEEEccCce-EEEeee
Confidence 11 12 33444333221 12 788888887775 344444
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.30 E-value=3.9 Score=46.05 Aligned_cols=149 Identities=13% Similarity=0.103 Sum_probs=88.7
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..++.|.-+|++|+.+... .....|++|.|.....+ ..|.... ..+..+.|.|.--++++
T Consensus 524 i~~vtWHrkGDYlatV~~~----------------~~~~~VliHQLSK~~sQ--~PF~ksk--G~vq~v~FHPs~p~lfV 583 (733)
T KOG0650|consen 524 IRQVTWHRKGDYLATVMPD----------------SGNKSVLIHQLSKRKSQ--SPFRKSK--GLVQRVKFHPSKPYLFV 583 (733)
T ss_pred cceeeeecCCceEEEeccC----------------CCcceEEEEeccccccc--CchhhcC--CceeEEEecCCCceEEE
Confidence 4789999999999977532 34456899988644332 2332222 23456789999999988
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
.+ ...|.++|+.... ...++..+. ....-.+.|.|+.|++.++. .+++-+|++-..
T Consensus 584 aT------q~~vRiYdL~kqe-------------lvKkL~tg~kwiS~msihp~GDnli~gs~d----~k~~WfDldlss 640 (733)
T KOG0650|consen 584 AT------QRSVRIYDLSKQE-------------LVKKLLTGSKWISSMSIHPNGDNLILGSYD----KKMCWFDLDLSS 640 (733)
T ss_pred Ee------ccceEEEehhHHH-------------HHHHHhcCCeeeeeeeecCCCCeEEEecCC----CeeEEEEcccCc
Confidence 76 3457788886521 122222221 11223367889998876554 578888876542
Q ss_pred -CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeE
Q 003878 396 -DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKY 430 (789)
Q Consensus 396 -~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~ 430 (789)
.++.+--+. ..+.++++.+.=-|+.+.+++|.-
T Consensus 641 kPyk~lr~H~--~avr~Va~H~ryPLfas~sdDgtv 674 (733)
T KOG0650|consen 641 KPYKTLRLHE--KAVRSVAFHKRYPLFASGSDDGTV 674 (733)
T ss_pred chhHHhhhhh--hhhhhhhhccccceeeeecCCCcE
Confidence 244443333 345666666522366666666643
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.88 E-value=6.1 Score=41.00 Aligned_cols=107 Identities=13% Similarity=0.021 Sum_probs=67.5
Q ss_pred EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCC--EEEEEEEeCCeEEEEEEECCCCc
Q 003878 364 EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN--QMIVSYLSDVKYVLQIRDLKNGS 441 (789)
Q Consensus 364 ~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~--~lv~~~~~~g~~~L~~~dl~tG~ 441 (789)
..|+.||..++.- +-+..+-.+||.+++ ...+-.|. ..+..+.|.++. .+++..+.|- .|..||...-.
T Consensus 78 v~WsddgskVf~g----~~Dk~~k~wDL~S~Q-~~~v~~Hd--~pvkt~~wv~~~~~~cl~TGSWDK--TlKfWD~R~~~ 148 (347)
T KOG0647|consen 78 VCWSDDGSKVFSG----GCDKQAKLWDLASGQ-VSQVAAHD--APVKTCHWVPGMNYQCLVTGSWDK--TLKFWDTRSSN 148 (347)
T ss_pred EEEccCCceEEee----ccCCceEEEEccCCC-eeeeeecc--cceeEEEEecCCCcceeEeccccc--ceeecccCCCC
Confidence 3499999776642 234678889999986 55565565 567888888742 3677777775 79999998666
Q ss_pred eeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 442 LLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 442 ~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
.+..+.+|.... .+.. --..+.+.. --..|..|++..+
T Consensus 149 pv~t~~LPeRvY-a~Dv--~~pm~vVat----a~r~i~vynL~n~ 186 (347)
T KOG0647|consen 149 PVATLQLPERVY-AADV--LYPMAVVAT----AERHIAVYNLENP 186 (347)
T ss_pred eeeeeeccceee-ehhc--cCceeEEEe----cCCcEEEEEcCCC
Confidence 667777774422 2221 122223322 2245667777655
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.87 E-value=2.1 Score=48.57 Aligned_cols=156 Identities=16% Similarity=0.123 Sum_probs=83.5
Q ss_pred eEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeE-EEecCCCEEEEEECC
Q 003878 301 YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNK 379 (789)
Q Consensus 301 ~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dG~~l~~~tn~ 379 (789)
.+..+++-|||..|++.+ .++++++|..+|. .+.++...-+..+. .|++||++|+ .
T Consensus 14 ci~d~afkPDGsqL~lAA------g~rlliyD~ndG~-------------llqtLKgHKDtVycVAys~dGkrFA----S 70 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA------GSRLLVYDTSDGT-------------LLQPLKGHKDTVYCVAYAKDGKRFA----S 70 (1081)
T ss_pred chheeEECCCCceEEEec------CCEEEEEeCCCcc-------------cccccccccceEEEEEEccCCceec----c
Confidence 345789999999999876 3679999998752 13334333333443 3888888765 2
Q ss_pred CCCCceEEEEECC-------------------------------CCCCe----EEeccCCCCceeeeEEEecCCEEEEEE
Q 003878 380 DAPKYKIIRVDLK-------------------------------EPNDW----FEVIPEAERDVLESATAVNLNQMIVSY 424 (789)
Q Consensus 380 ~~~~~~L~~~dl~-------------------------------~~~~~----~~l~~~~~~~~i~~v~~~~~~~lv~~~ 424 (789)
++.+--++.|+.+ ...-| +.+..+.....+.+.+|+.|+..++.+
T Consensus 71 G~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG 150 (1081)
T KOG1538|consen 71 GSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALG 150 (1081)
T ss_pred CCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEe
Confidence 2222233333211 00001 112222222345677899878888888
Q ss_pred EeCCeEEEEEEECCCCceeeecccC---CeeEEEeecccCC---cEEEEEEcCCCCCcEEEEEE
Q 003878 425 LSDVKYVLQIRDLKNGSLLHQLPIE---IGSVNAISARRED---SVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 425 ~~~g~~~L~~~dl~tG~~~~~l~~~---~~~v~~~s~s~d~---~~l~~~~ss~~~P~~ly~~d 482 (789)
.-+|. |.+-+. +|+....|.-| ...|.++.++|.+ ..=.+..-.|.+.-..|.++
T Consensus 151 ~~nGT--IsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls 211 (1081)
T KOG1538|consen 151 MFNGT--ISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS 211 (1081)
T ss_pred ccCce--EEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec
Confidence 88874 433344 46654555543 3334455555432 22223334555544444443
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.76 E-value=11 Score=37.99 Aligned_cols=64 Identities=16% Similarity=0.047 Sum_probs=38.1
Q ss_pred ceeeeEEEecC----CEEEEEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEeecccCCcEEEEEEc
Q 003878 407 DVLESATAVNL----NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFT 470 (789)
Q Consensus 407 ~~i~~v~~~~~----~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s~d~~~l~~~~s 470 (789)
..+.+++|.|. ...+++.++++.--|+..+.+.+.....+-.+ ...+-.+++|..|+.|.++..
T Consensus 208 dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~G 276 (299)
T KOG1332|consen 208 DWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGG 276 (299)
T ss_pred hhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecC
Confidence 45677887763 35678888888555555554323222222112 233556788888988877654
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.45 E-value=7.7 Score=38.95 Aligned_cols=100 Identities=11% Similarity=0.172 Sum_probs=58.1
Q ss_pred EEecCCCEEEEEECCCCCCceEEEEE--CCCCC--CeEEeccCC-----CCceeeeEEEecCCEEEEEEEeCCeEEEEEE
Q 003878 365 VIANDDTVFTFLTNKDAPKYKIIRVD--LKEPN--DWFEVIPEA-----ERDVLESATAVNLNQMIVSYLSDVKYVLQIR 435 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~~~~~~L~~~d--l~~~~--~~~~l~~~~-----~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~ 435 (789)
.|+.|-+.+|++-. -++.|-.+| ..++. +.+.++.-. +...-.++.+..++.|++..-..+ +++.+
T Consensus 164 ~Wd~d~K~fY~iDs---ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~--~V~~~ 238 (310)
T KOG4499|consen 164 AWDSDAKKFYYIDS---LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGG--TVQKV 238 (310)
T ss_pred cccccCcEEEEEcc---CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCc--EEEEE
Confidence 38878888888643 357774444 65553 112221110 011113455554467777666554 79999
Q ss_pred ECCCCceeeecccCCeeEEEeecc-cCCcEEEEEE
Q 003878 436 DLKNGSLLHQLPIEIGSVNAISAR-REDSVVFISF 469 (789)
Q Consensus 436 dl~tG~~~~~l~~~~~~v~~~s~s-~d~~~l~~~~ 469 (789)
|+.+|+.+.++.+|.-.+++..+- ++-+.++++.
T Consensus 239 dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 239 DPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 999999888888885556555442 2234455443
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.29 E-value=3.5 Score=41.29 Aligned_cols=16 Identities=38% Similarity=0.962 Sum_probs=14.2
Q ss_pred ceEEEEeCCcEEEEEE
Q 003878 238 SSIAWTHDSKGFFYSR 253 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~ 253 (789)
.+++|+-|.|.+||+-
T Consensus 161 Ngl~Wd~d~K~fY~iD 176 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYID 176 (310)
T ss_pred ccccccccCcEEEEEc
Confidence 6799999999999983
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.66 Score=53.05 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=31.8
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSW 177 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~ 177 (789)
+...|.++.++++...|| .|....+|++|||+.++++. ++.+
T Consensus 69 hespIeSl~f~~~E~Lla-----agsasgtiK~wDleeAk~vr-tLtg 110 (825)
T KOG0267|consen 69 HESPIESLTFDTSERLLA-----AGSASGTIKVWDLEEAKIVR-TLTG 110 (825)
T ss_pred cCCcceeeecCcchhhhc-----ccccCCceeeeehhhhhhhh-hhhc
Confidence 345678899999998888 45556699999999987664 4443
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.14 E-value=12 Score=40.72 Aligned_cols=74 Identities=12% Similarity=0.123 Sum_probs=44.2
Q ss_pred ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 236 ~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
++..+.|.|-.-.+..+ ..+..++.+.+..... +.-.-|.. ...+..+.|.|-....+
T Consensus 288 ~Vq~l~wh~~~p~~LLs------------------Gs~D~~V~l~D~R~~~-~s~~~wk~---~g~VEkv~w~~~se~~f 345 (463)
T KOG0270|consen 288 KVQTLEWHPYEPSVLLS------------------GSYDGTVALKDCRDPS-NSGKEWKF---DGEVEKVAWDPHSENSF 345 (463)
T ss_pred ceeEEEecCCCceEEEe------------------ccccceEEeeeccCcc-ccCceEEe---ccceEEEEecCCCceeE
Confidence 46899999977776665 2344456666665321 11111221 11245678888887777
Q ss_pred EEEEcCCCCceEEEEEECCC
Q 003878 316 MCIEENCDPVNKVYYCDLSA 335 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~ 335 (789)
+.+.+ ...||.+|+..
T Consensus 346 ~~~td----dG~v~~~D~R~ 361 (463)
T KOG0270|consen 346 FVSTD----DGTVYYFDIRN 361 (463)
T ss_pred EEecC----CceEEeeecCC
Confidence 76643 34588888876
|
|
| >PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.18 Score=51.13 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=18.1
Q ss_pred CcEEEEeeChHHHHHHHHHHh
Q 003878 618 RKLCIEGGSNGGLLVGACINQ 638 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~ 638 (789)
.+|.++|||+||+++-.++..
T Consensus 78 ~~IsfIgHSLGGli~r~al~~ 98 (217)
T PF05057_consen 78 RKISFIGHSLGGLIARYALGL 98 (217)
T ss_pred ccceEEEecccHHHHHHHHHH
Confidence 589999999999998777663
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.12 E-value=3.4 Score=45.88 Aligned_cols=97 Identities=15% Similarity=0.123 Sum_probs=60.4
Q ss_pred EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCcee
Q 003878 364 EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLL 443 (789)
Q Consensus 364 ~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~ 443 (789)
..|.|+...++|.. ..+++.-+++.....-.--.|+ ..+-.++|+....++++..+|- +..+||-. |..+
T Consensus 151 ~~W~p~S~~vl~c~-----g~h~~IKpL~~n~k~i~WkAHD--GiiL~~~W~~~s~lI~sgGED~--kfKvWD~~-G~~L 220 (737)
T KOG1524|consen 151 ARWAPNSNSIVFCQ-----GGHISIKPLAANSKIIRWRAHD--GLVLSLSWSTQSNIIASGGEDF--RFKIWDAQ-GANL 220 (737)
T ss_pred EEECCCCCceEEec-----CCeEEEeecccccceeEEeccC--cEEEEeecCccccceeecCCce--eEEeeccc-Cccc
Confidence 34889887776632 2467766665443111112343 5677888987667888877775 67788876 6543
Q ss_pred eecccCCeeEEEeecccCCcEEEEEEc
Q 003878 444 HQLPIEIGSVNAISARREDSVVFISFT 470 (789)
Q Consensus 444 ~~l~~~~~~v~~~s~s~d~~~l~~~~s 470 (789)
..-..+...+.+++|.||...++-++.
T Consensus 221 f~S~~~ey~ITSva~npd~~~~v~S~n 247 (737)
T KOG1524|consen 221 FTSAAEEYAITSVAFNPEKDYLLWSYN 247 (737)
T ss_pred ccCChhccceeeeeeccccceeeeeee
Confidence 322334677888999998555554443
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=91.87 E-value=15 Score=37.99 Aligned_cols=119 Identities=17% Similarity=0.130 Sum_probs=75.3
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCcee-cccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE-ADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
.+.-+.|-|++++||-.. ...|.+|+++.+..+ +......
T Consensus 125 ~i~cvew~Pns~klasm~------dn~i~l~~l~ess~~vaev~ss~--------------------------------- 165 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD------DNNIVLWSLDESSKIVAEVLSSE--------------------------------- 165 (370)
T ss_pred ceeeEEEcCCCCeeEEec------cCceEEEEcccCcchheeecccc---------------------------------
Confidence 466788999999999654 357999999887542 2111110
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEe--CCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTH--DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wsp--Dg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
..+ ++.++.+-+||| ||..++.+.. ..++.+++.|....
T Consensus 166 ----------s~e--------~~~~ftsg~WspHHdgnqv~tt~d--------------------~tl~~~D~RT~~~~- 206 (370)
T KOG1007|consen 166 ----------SAE--------MRHSFTSGAWSPHHDGNQVATTSD--------------------STLQFWDLRTMKKN- 206 (370)
T ss_pred ----------ccc--------ccceecccccCCCCccceEEEeCC--------------------CcEEEEEccchhhh-
Confidence 000 011367889998 8888886522 24778888764321
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCC
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 335 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~ 335 (789)
...+. .+...+.++.+.|+-++++.+..+ ...|.++|...
T Consensus 207 -~sI~d-AHgq~vrdlDfNpnkq~~lvt~gD----dgyvriWD~R~ 246 (370)
T KOG1007|consen 207 -NSIED-AHGQRVRDLDFNPNKQHILVTCGD----DGYVRIWDTRK 246 (370)
T ss_pred -cchhh-hhcceeeeccCCCCceEEEEEcCC----CccEEEEeccC
Confidence 11122 223445678899999999887744 34577888765
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.82 E-value=6.7 Score=41.85 Aligned_cols=125 Identities=16% Similarity=0.225 Sum_probs=74.0
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCc--eecccccccccccccCccceeeeeeccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI--VEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLY 207 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 207 (789)
++.-+..+++|.+|++|| +|++....+||.++--. .++..|.-. + +||-+
T Consensus 55 H~GCiNAlqFS~N~~~L~-----SGGDD~~~~~W~~de~~~~k~~KPI~~~-~--~~H~S-------------------- 106 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLA-----SGGDDMHGRVWNVDELMVRKTPKPIGVM-E--HPHRS-------------------- 106 (609)
T ss_pred hccccceeeeccCCeEEe-----ecCCcceeeeechHHHHhhcCCCCceec-c--Ccccc--------------------
Confidence 445678899999999998 67788899999876431 111111111 0 11101
Q ss_pred cccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC
Q 003878 208 LRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS 287 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~ 287 (789)
....++|.- +.+++|+ ..+..+|.+|++.+++.
T Consensus 107 ----------------------------NIF~L~F~~-~N~~~~S------------------G~~~~~VI~HDiEt~qs 139 (609)
T KOG4227|consen 107 ----------------------------NIFSLEFDL-ENRFLYS------------------GERWGTVIKHDIETKQS 139 (609)
T ss_pred ----------------------------ceEEEEEcc-CCeeEec------------------CCCcceeEeeeccccee
Confidence 124556643 4556665 33445788999988654
Q ss_pred CcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCC
Q 003878 288 EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 336 (789)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g 336 (789)
+-|+...++...+..+..+|-...++..+. ...|.++|....
T Consensus 140 --i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~-----~~~V~~~D~Rd~ 181 (609)
T KOG4227|consen 140 --IYVANENNNRGDVYHMDQHPTDNTLIVVTR-----AKLVSFIDNRDR 181 (609)
T ss_pred --eeeecccCcccceeecccCCCCceEEEEec-----CceEEEEeccCC
Confidence 445555554444556777887666555442 244677777653
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.60 E-value=18 Score=37.72 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=56.4
Q ss_pred EEEecCCCEEEEEECCCCCCceEEEEECCCCC-CeE-EeccCCC----CceeeeEEEec-CCEEEEEEEeCCeEEEEEEE
Q 003878 364 EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-DWF-EVIPEAE----RDVLESATAVN-LNQMIVSYLSDVKYVLQIRD 436 (789)
Q Consensus 364 ~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~-~~~-~l~~~~~----~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~d 436 (789)
-.|++.++.|++.-.++ | ..|+.++..... ... ...+... -..++++.+.+ .+++++.+.+.. .|..+|
T Consensus 186 lA~d~~~~~l~~aKEr~-P-~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr--~l~Evd 261 (316)
T COG3204 186 LAWDPVDHRLFVAKERN-P-IGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESR--RLLEVD 261 (316)
T ss_pred eecCCCCceEEEEEccC-C-cEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCc--eEEEEe
Confidence 35889888999887775 3 578888743211 000 1111111 01244555553 267777666554 566677
Q ss_pred CCCCceeeecccC---------CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEE
Q 003878 437 LKNGSLLHQLPIE---------IGSVNAISARREDSVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 437 l~tG~~~~~l~~~---------~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~d 482 (789)
++ |+.+..+.+. .-...+++.+.++. +++. ..|+-.|++.
T Consensus 262 ~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIv----SEPnlfy~F~ 310 (316)
T COG3204 262 LS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIV----SEPNLFYRFT 310 (316)
T ss_pred cC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEE----ecCCcceecc
Confidence 75 6543444332 11233555665555 4433 3466666653
|
|
| >PLN03016 sinapoylglucose-malate O-sinapoyltransferase | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.38 Score=54.02 Aligned_cols=140 Identities=14% Similarity=0.081 Sum_probs=76.8
Q ss_pred EEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCC---------------------HHHHHHHHcCCe
Q 003878 511 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFS---------------------VSRTILMRHLGA 569 (789)
Q Consensus 511 ~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~---------------------~~~~~~l~~~G~ 569 (789)
+.+....+ ..+-.|++...+ .....|+||++-||||.+...++. ..-..|.. =.
T Consensus 42 ~~v~~~~~-~~lfy~f~es~~--~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~--~a 116 (433)
T PLN03016 42 IGIGEDEN-VQFFYYFIKSEN--NPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTK--MA 116 (433)
T ss_pred EEecCCCC-eEEEEEEEecCC--CcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhh--cC
Confidence 33333345 566666665443 245789999999999876521110 00122332 24
Q ss_pred EEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHH-HHHHcCCCCCCcEEEEeeChHHHHHHHHHH----hC-----
Q 003878 570 VFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE-YLISAGYTQSRKLCIEGGSNGGLLVGACIN----QR----- 639 (789)
Q Consensus 570 ~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~-~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~----~~----- 639 (789)
.++.+|..-|.+|...-.... ........+|+..++. |+.....-..+.+.|.|.|+||..+-.++. ..
T Consensus 117 nllfiDqPvGtGfSy~~~~~~-~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~ 195 (433)
T PLN03016 117 NIIFLDQPVGSGFSYSKTPID-KTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCE 195 (433)
T ss_pred cEEEecCCCCCCccCCCCCCC-ccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccC
Confidence 567777665555542111110 0111122356665544 344444334578999999999975544432 21
Q ss_pred -CCceeEEEecCCccccc
Q 003878 640 -PDLFGCALAHVGVMDML 656 (789)
Q Consensus 640 -pd~f~a~v~~~p~~d~~ 656 (789)
+=-+++++...|++|+.
T Consensus 196 ~~inLkGi~iGNg~t~~~ 213 (433)
T PLN03016 196 PPINLQGYMLGNPVTYMD 213 (433)
T ss_pred CcccceeeEecCCCcCch
Confidence 11578999999988764
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=91.22 E-value=11 Score=43.46 Aligned_cols=69 Identities=10% Similarity=0.030 Sum_probs=43.4
Q ss_pred ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcE
Q 003878 234 QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQY 313 (789)
Q Consensus 234 ~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~ 313 (789)
.+....++-||+|+-|+-..+-. ......|++|..++=.....+ +.|...+..+.|||||++
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~--------------~~ehAvI~lw~t~~W~~~~~L----~~HsLTVT~l~FSpdg~~ 586 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSS--------------LKEHAVIRLWNTANWLQVQEL----EGHSLTVTRLAFSPDGRY 586 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhC--------------CccceEEEEEeccchhhhhee----cccceEEEEEEECCCCcE
Confidence 44456788899988777543322 223445888876653322222 234555678999999999
Q ss_pred EEEEEEc
Q 003878 314 LVMCIEE 320 (789)
Q Consensus 314 l~~~~~~ 320 (789)
|+-.+.+
T Consensus 587 LLsvsRD 593 (764)
T KOG1063|consen 587 LLSVSRD 593 (764)
T ss_pred EEEeecC
Confidence 9876644
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=91.19 E-value=48 Score=41.28 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=23.4
Q ss_pred eEEeCCCCcEEEEEEecCC-ceEEEEEEEEcC
Q 003878 136 KVSVSEDAKYLAYALSYSG-SDWATIKLMRIE 166 (789)
Q Consensus 136 ~~~~SpDg~~la~~~~~~g-~~~~~i~v~dl~ 166 (789)
.++|-.||+++|.+.-... +....|+||+-+
T Consensus 214 ~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re 245 (928)
T PF04762_consen 214 RISWRGDGEYFAVSSVEPETGSRRVIRVYSRE 245 (928)
T ss_pred EEEECCCCcEEEEEEEEcCCCceeEEEEECCC
Confidence 5678999999998764222 247899999976
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=90.95 E-value=17 Score=36.64 Aligned_cols=112 Identities=16% Similarity=0.088 Sum_probs=60.9
Q ss_pred ecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEE
Q 003878 308 TEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKII 387 (789)
Q Consensus 308 SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~ 387 (789)
.++++++++... ...|+.+|..+|+ ..|..-..+.. .... ..++..+|+.+. +.+|+
T Consensus 33 ~~~~~~v~~~~~-----~~~l~~~d~~tG~------------~~W~~~~~~~~-~~~~-~~~~~~v~v~~~----~~~l~ 89 (238)
T PF13360_consen 33 VPDGGRVYVASG-----DGNLYALDAKTGK------------VLWRFDLPGPI-SGAP-VVDGGRVYVGTS----DGSLY 89 (238)
T ss_dssp EEETTEEEEEET-----TSEEEEEETTTSE------------EEEEEECSSCG-GSGE-EEETTEEEEEET----TSEEE
T ss_pred EEeCCEEEEEcC-----CCEEEEEECCCCC------------EEEEeeccccc-ccee-eecccccccccc----eeeeE
Confidence 446667766531 4668999988763 11322222111 1111 234677877762 23899
Q ss_pred EEECCCCC-CeE-EeccCCCC--ceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec
Q 003878 388 RVDLKEPN-DWF-EVIPEAER--DVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL 446 (789)
Q Consensus 388 ~~dl~~~~-~~~-~l~~~~~~--~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l 446 (789)
.+|+.+++ .|+ ........ .....+.+.. +.+++... ++ .|+.+|+++|+.+-..
T Consensus 90 ~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~g--~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 90 ALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-DRLYVGTS-SG--KLVALDPKTGKLLWKY 148 (238)
T ss_dssp EEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-TEEEEEET-CS--EEEEEETTTTEEEEEE
T ss_pred ecccCCcceeeeeccccccccccccccCceEec-CEEEEEec-cC--cEEEEecCCCcEEEEe
Confidence 99988887 465 33332111 1122334443 56665443 33 7999999999864433
|
... |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.73 E-value=4.5 Score=45.07 Aligned_cols=103 Identities=12% Similarity=-0.005 Sum_probs=52.4
Q ss_pred cEEEEEEcCCCCCcEEEEEECCCCCceEEEeeec-----cCCCCCCCCCcEEEEEEecCCCceEEEEEEEecCCCC--CC
Q 003878 463 SVVFISFTSFLIPGIVYQCNLKTETPEMKIFRET-----IIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIK--LD 535 (789)
Q Consensus 463 ~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~--~~ 535 (789)
+-+.|.+.|..+-..+.+||+.-.. +.. .++ ..++.. ...........+..| ...|+--..|.+.. ..
T Consensus 431 ~~v~YRfGSVGqDTqlcLWDlteD~--L~~-~~p~~~~R~~~n~~-~pats~~a~s~a~gg-~~~pg~~~~P~~~~r~~s 505 (636)
T KOG2394|consen 431 NSVTYRFGSVGQDTQLCLWDLTEDV--LVP-HPPLYRLRRHPNNS-SPATSPGAQSSAHGG-EIGPGNTSVPGPCTRSAS 505 (636)
T ss_pred cceEEEeecccccceEEEEecchhh--ccc-CCchhhhhcCCCCC-CCccCcccchhcccC-cccCCCccCCCCcccCCC
Confidence 3477888899999999999986542 111 110 011100 011111111123445 45555444555433 34
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeec
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIR 577 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~R 577 (789)
.+.|++=..+|++.....+.-. .. -||+.+..+-|
T Consensus 506 lp~s~i~~~ag~~~~~~~~~~~------~s-~~fs~lt~~~r 540 (636)
T KOG2394|consen 506 LPSSAISNRAGTPSVAGDGATA------SS-SGFSFLTSACR 540 (636)
T ss_pred CccccccccCCCCCcccccccc------cc-ccceeechhHh
Confidence 5667777777776554443211 11 56777776655
|
|
| >PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.67 E-value=15 Score=39.34 Aligned_cols=135 Identities=8% Similarity=0.044 Sum_probs=80.9
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCC-CCCChhH-
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGG-GEYGEEW- 586 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~-g~~g~~~- 586 (789)
+.+++.. ++ .+..+ |+.|... ..+.=+||.+||-......+..-.....-|.+.|+..+.+....- +..-...
T Consensus 63 e~~~L~~-~~-~~fla-L~~~~~~--~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~ 137 (310)
T PF12048_consen 63 EVQWLQA-GE-ERFLA-LWRPANS--AKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRA 137 (310)
T ss_pred hcEEeec-CC-EEEEE-EEecccC--CCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccC
Confidence 3445554 45 56644 4455542 345668999999766666666555555666679999999876640 0000000
Q ss_pred ------Hhccc---------------------ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC
Q 003878 587 ------HKGGA---------------------LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR 639 (789)
Q Consensus 587 ------~~~~~---------------------~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~ 639 (789)
..++. .......+.-+.+++.++.+++. .+|+++|+..|+.++..++...
T Consensus 138 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~~---~~ivlIg~G~gA~~~~~~la~~ 214 (310)
T PF12048_consen 138 TEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQGG---KNIVLIGHGTGAGWAARYLAEK 214 (310)
T ss_pred CCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcCC---ceEEEEEeChhHHHHHHHHhcC
Confidence 00000 00112234455566777777654 3599999999999999999887
Q ss_pred CC-ceeEEEecCC
Q 003878 640 PD-LFGCALAHVG 651 (789)
Q Consensus 640 pd-~f~a~v~~~p 651 (789)
+. ...+.|+..+
T Consensus 215 ~~~~~daLV~I~a 227 (310)
T PF12048_consen 215 PPPMPDALVLINA 227 (310)
T ss_pred CCcccCeEEEEeC
Confidence 64 3567776655
|
This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes. |
| >PLN02209 serine carboxypeptidase | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.74 Score=51.75 Aligned_cols=140 Identities=9% Similarity=0.087 Sum_probs=76.5
Q ss_pred EEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHH---------------------HHHHHHcCCe
Q 003878 511 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVS---------------------RTILMRHLGA 569 (789)
Q Consensus 511 ~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~---------------------~~~~l~~~G~ 569 (789)
+.+....| ..+-.|++.... .....|+++++-||||.+...+...+ ...|.. =.
T Consensus 44 ~~v~~~~~-~~lf~~f~es~~--~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~--~a 118 (437)
T PLN02209 44 IGIGEEEN-VQFFYYFIKSDK--NPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTK--TA 118 (437)
T ss_pred EEecCCCC-eEEEEEEEecCC--CCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhh--cC
Confidence 44443446 566666665443 23568999999999988654221100 012222 23
Q ss_pred EEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHH-HcCCCCCCcEEEEeeChHHHHHHHHHH----hC-----
Q 003878 570 VFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLI-SAGYTQSRKLCIEGGSNGGLLVGACIN----QR----- 639 (789)
Q Consensus 570 ~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~-~~~~~d~~~i~i~G~S~GG~l~~~~~~----~~----- 639 (789)
.++.+|..-|.+|...-..... .....+.+|+..+++... ....-..+.+.|.|.|+||..+-.++. ..
T Consensus 119 nllfiDqPvGtGfSy~~~~~~~-~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~ 197 (437)
T PLN02209 119 NIIFLDQPVGSGFSYSKTPIER-TSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCN 197 (437)
T ss_pred cEEEecCCCCCCccCCCCCCCc-cCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccC
Confidence 5666776655555421111111 111123466666555433 333344568999999999965444332 21
Q ss_pred C-CceeEEEecCCccccc
Q 003878 640 P-DLFGCALAHVGVMDML 656 (789)
Q Consensus 640 p-d~f~a~v~~~p~~d~~ 656 (789)
+ =-+++++...|++|..
T Consensus 198 ~~inl~Gi~igng~td~~ 215 (437)
T PLN02209 198 PPINLQGYVLGNPITHIE 215 (437)
T ss_pred CceeeeeEEecCcccChh
Confidence 1 1478999999988863
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.31 E-value=32 Score=37.83 Aligned_cols=204 Identities=11% Similarity=0.097 Sum_probs=99.8
Q ss_pred ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 236 ~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
.++.+.|+|-+..=+|+. .+.-.|.+.++.....+.++ ...+...++.+..++.+.+.++
T Consensus 236 ~Vs~l~F~P~n~s~i~ss------------------SyDGtiR~~D~~~~i~e~v~--s~~~d~~~fs~~d~~~e~~~vl 295 (498)
T KOG4328|consen 236 PVSGLKFSPANTSQIYSS------------------SYDGTIRLQDFEGNISEEVL--SLDTDNIWFSSLDFSAESRSVL 295 (498)
T ss_pred cccceEecCCChhheeee------------------ccCceeeeeeecchhhHHHh--hcCccceeeeeccccCCCccEE
Confidence 357788888665544442 22335778888766554332 2223345567888999988888
Q ss_pred EEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCC-
Q 003878 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP- 394 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~- 394 (789)
+..+-+ ..-++|+.++....+ ++. +-.. ......+.|-..++...... +..+..||+..-
T Consensus 296 ~~~~~G-----~f~~iD~R~~~s~~~---------~~~-lh~k-KI~sv~~NP~~p~~laT~s~---D~T~kIWD~R~l~ 356 (498)
T KOG4328|consen 296 FGDNVG-----NFNVIDLRTDGSEYE---------NLR-LHKK-KITSVALNPVCPWFLATASL---DQTAKIWDLRQLR 356 (498)
T ss_pred Eeeccc-----ceEEEEeecCCccch---------hhh-hhhc-ccceeecCCCCchheeeccc---Ccceeeeehhhhc
Confidence 875432 345667766432211 111 1110 11111234433343333222 234556776542
Q ss_pred -C-C-eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC----CCceeeecccC--Ce-eEEE--eecccCC
Q 003878 395 -N-D-WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK----NGSLLHQLPIE--IG-SVNA--ISARRED 462 (789)
Q Consensus 395 -~-~-~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~----tG~~~~~l~~~--~~-~v~~--~s~s~d~ 462 (789)
+ . .--.+++. ..+.++.+++.+.-++....+. .|++||-. --.....|..+ .+ .++- ..|.|+-
T Consensus 357 ~K~sp~lst~~Hr--rsV~sAyFSPs~gtl~TT~~D~--~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~ 432 (498)
T KOG4328|consen 357 GKASPFLSTLPHR--RSVNSAYFSPSGGTLLTTCQDN--EIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDY 432 (498)
T ss_pred CCCCcceeccccc--ceeeeeEEcCCCCceEeeccCC--ceEEeecccccccCCccceeeccCcccccccchhheeCCCc
Confidence 2 1 11223444 5677777887433344444443 68888752 11111222222 11 1111 2467766
Q ss_pred cEEEEEEcCCCCCcEEEEEECCCC
Q 003878 463 SVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 463 ~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
+.+++. ..|..|=.+|...+
T Consensus 433 ~li~vg----~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 433 NLIVVG----RYPRPIDVFDGNGG 452 (498)
T ss_pred cEEEEe----ccCcceeEEcCCCC
Confidence 544432 44556777776555
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.05 E-value=31 Score=42.64 Aligned_cols=120 Identities=13% Similarity=0.173 Sum_probs=61.8
Q ss_pred EEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCC
Q 003878 304 SGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPK 383 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~ 383 (789)
++.|--||++++++..........+.++|-++. + .. ......+.. ..-.|-|.|..+....... ..
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~---L---ns------~se~~~~l~-~~LsWkPsgs~iA~iq~~~-sd 265 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDREGA---L---NS------TSEPVEGLQ-HSLSWKPSGSLIAAIQCKT-SD 265 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEecccch---h---hc------ccCcccccc-cceeecCCCCeEeeeeecC-CC
Confidence 588999999999866544322356777776631 0 00 000001111 1123778777666544332 23
Q ss_pred ceEEEEECCCCC--CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCe-EEEEEEECC
Q 003878 384 YKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVK-YVLQIRDLK 438 (789)
Q Consensus 384 ~~L~~~dl~~~~--~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~-~~L~~~dl~ 438 (789)
.+|..+.-++-. .+..-.|.++ ..++.+.|..+..+++....+.. ..|++|...
T Consensus 266 ~~IvffErNGL~hg~f~l~~p~de-~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 266 SDIVFFERNGLRHGEFVLPFPLDE-KEVEELAWNSNSDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred CcEEEEecCCccccccccCCcccc-cchheeeecCCCCceeeeecccccceEEEEEec
Confidence 467776654422 1222223332 22778888875555555444433 347776653
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.97 E-value=10 Score=43.32 Aligned_cols=112 Identities=15% Similarity=0.066 Sum_probs=59.0
Q ss_pred EEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEee
Q 003878 276 EFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL 355 (789)
Q Consensus 276 ~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l 355 (789)
.|.+|+-.+...--.+. . |...+..+..++||.+++-.+++ ..|.++|+... .+....
T Consensus 194 ~lr~wDprt~~kimkLr-G---HTdNVr~ll~~dDGt~~ls~sSD-----gtIrlWdLgqQ-------------rCl~T~ 251 (735)
T KOG0308|consen 194 DLRLWDPRTCKKIMKLR-G---HTDNVRVLLVNDDGTRLLSASSD-----GTIRLWDLGQQ-------------RCLATY 251 (735)
T ss_pred ceEEeccccccceeeee-c---cccceEEEEEcCCCCeEeecCCC-----ceEEeeecccc-------------ceeeeE
Confidence 46777766643221122 2 22335567889999999866543 34788888652 112222
Q ss_pred eccccceeEEE-ecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEe
Q 003878 356 IDGFDAQYEVI-ANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAV 415 (789)
Q Consensus 356 ~~~~~~~~~~~-s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~ 415 (789)
...-+..|... +++=+++|. ++....|++.|+.++...+.+..+. ..+..+...
T Consensus 252 ~vH~e~VWaL~~~~sf~~vYs----G~rd~~i~~Tdl~n~~~~tlick~d--aPv~~l~~~ 306 (735)
T KOG0308|consen 252 IVHKEGVWALQSSPSFTHVYS----GGRDGNIYRTDLRNPAKSTLICKED--APVLKLHLH 306 (735)
T ss_pred EeccCceEEEeeCCCcceEEe----cCCCCcEEecccCCchhheEeecCC--Cchhhhhhc
Confidence 22222233322 233355553 3345779999998865334444333 444444444
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=89.77 E-value=10 Score=39.77 Aligned_cols=126 Identities=16% Similarity=0.135 Sum_probs=66.7
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc--cee---EEEecCCCEEEEE
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD--AQY---EVIANDDTVFTFL 376 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~--~~~---~~~s~dG~~l~~~ 376 (789)
+.+++|.|++-.|+..+.+..-.-...|+-+++..|.. ..+ ....|+-.++.++. ..+ ..|+|+|..|.+.
T Consensus 149 v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap--~pW--gsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv 224 (361)
T KOG1523|consen 149 VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAP--TPW--GSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWV 224 (361)
T ss_pred eeeeeccCCcceecccccCcceeEEEEeeeccccCCCC--CCC--ccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEe
Confidence 56788999888887665443222234566666664421 111 11234444443331 111 3489999999987
Q ss_pred ECCCCCCceEEEEECCCCCC-eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC
Q 003878 377 TNKDAPKYKIIRVDLKEPND-WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 377 tn~~~~~~~L~~~dl~~~~~-~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~ 438 (789)
... ..+...|..++.. ...+ ... ...+.++.|..+..++. .-.+-.+.++..+-+
T Consensus 225 ~Hd----s~v~~~da~~p~~~v~~~-~~~-~lP~ls~~~ise~~vv~-ag~~c~P~lf~~~~~ 280 (361)
T KOG1523|consen 225 GHD----STVSFVDAAGPSERVQSV-ATA-QLPLLSVSWISENSVVA-AGYDCGPVLFVTDEE 280 (361)
T ss_pred cCC----CceEEeecCCCchhccch-hhc-cCCceeeEeecCCceee-cCCCCCceEEEeccc
Confidence 654 3477777766541 1111 111 23455666666344443 334434667776654
|
|
| >KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.52 E-value=2.2 Score=47.83 Aligned_cols=144 Identities=13% Similarity=0.069 Sum_probs=83.5
Q ss_pred EEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHc--------------CCeEEEEEee
Q 003878 511 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRH--------------LGAVFCIANI 576 (789)
Q Consensus 511 ~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~--------------~G~~v~~~~~ 576 (789)
+.+....| ..+-.|++-... .....|+||++-||||-+...++..+...+.-+ +=..++..|-
T Consensus 49 v~v~~~~~-~~LFYwf~eS~~--~P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfLd~ 125 (454)
T KOG1282|consen 49 VTVNESEG-RQLFYWFFESEN--NPETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANILFLDQ 125 (454)
T ss_pred EECCCCCC-ceEEEEEEEccC--CCCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccccEEEEec
Confidence 44444467 777777765543 235679999999999876443322221111100 1123555565
Q ss_pred cCCCCCChhHHhcccccCCcchHHHHHH-HHHHHHHcCCCCCCcEEEEeeChHHHH----HHHHHHhCC------CceeE
Q 003878 577 RGGGEYGEEWHKGGALAKKQNCFDDFIS-ASEYLISAGYTQSRKLCIEGGSNGGLL----VGACINQRP------DLFGC 645 (789)
Q Consensus 577 RG~g~~g~~~~~~~~~~~~~~~~~D~~~-~~~~L~~~~~~d~~~i~i~G~S~GG~l----~~~~~~~~p------d~f~a 645 (789)
.=|.+|...-...........+.+|+.. ..+|+.+...-..+.+.|.|-|++|.. |..+...+. =-+++
T Consensus 126 PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG 205 (454)
T KOG1282|consen 126 PVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKG 205 (454)
T ss_pred CCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceE
Confidence 5555554321111112233344566654 456777766666789999999999944 444444321 25899
Q ss_pred EEecCCcccccc
Q 003878 646 ALAHVGVMDMLR 657 (789)
Q Consensus 646 ~v~~~p~~d~~~ 657 (789)
++...|++|...
T Consensus 206 ~~IGNg~td~~~ 217 (454)
T KOG1282|consen 206 YAIGNGLTDPEI 217 (454)
T ss_pred EEecCcccCccc
Confidence 999999998753
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=89.47 E-value=29 Score=36.06 Aligned_cols=110 Identities=7% Similarity=0.055 Sum_probs=56.5
Q ss_pred cccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCC-ccccc-ccCCCC
Q 003878 273 LYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEG-LEGFK-KRDGLL 350 (789)
Q Consensus 273 ~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~-~~~~~-~~~~~~ 350 (789)
+..+|.+-++.++.-...+ .+ +...+.++.|||...|++.+.+. ...+.++|+... .+ +..+. +..+..
T Consensus 166 r~~~VrLCDi~SGs~sH~L--sG--Hr~~vlaV~Wsp~~e~vLatgsa----Dg~irlWDiRra-sgcf~~lD~hn~k~~ 236 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHTL--SG--HRDGVLAVEWSPSSEWVLATGSA----DGAIRLWDIRRA-SGCFRVLDQHNTKRP 236 (397)
T ss_pred CCCcEEEEeccCCcceeee--cc--ccCceEEEEeccCceeEEEecCC----CceEEEEEeecc-cceeEEeecccCccC
Confidence 4556888888766433222 22 23346789999999999887643 344666665431 01 00000 000011
Q ss_pred ccEe-eecccccee-EEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 351 PFVK-LIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 351 ~~~~-l~~~~~~~~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
|..+ .+....... ..|+.||++++..+ .+.++-.++..+|.
T Consensus 237 p~~~~n~ah~gkvngla~tSd~~~l~~~g----td~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 237 PILKTNTAHYGKVNGLAWTSDARYLASCG----TDDRIRVWNMESGR 279 (397)
T ss_pred ccccccccccceeeeeeecccchhhhhcc----CccceEEeecccCc
Confidence 1111 111122111 34777888776433 34567777777664
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=89.24 E-value=35 Score=40.13 Aligned_cols=86 Identities=13% Similarity=0.146 Sum_probs=46.8
Q ss_pred eEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECC
Q 003878 301 YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNK 379 (789)
Q Consensus 301 ~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~ 379 (789)
.+..+..|+||-++++...... ...|++.-+.....+...+ .....+.... +..-..|..+ ..|+++...
T Consensus 456 ~I~~lrvSrDG~RvAvv~~~~g--~~~v~va~V~R~~~G~~~l------~~~~~l~~~l~~v~~~~W~~~-~sL~Vlg~~ 526 (599)
T PRK13613 456 RVVAVRVARDGVRVALIVEKDG--RRSLQIGRIVRDAKAVVSV------EEFRSLAPELEDVTDMSWAGD-SQLVVLGRE 526 (599)
T ss_pred EeEEEEECCCccEEEEEEecCC--CcEEEEEEEEeCCCCcEEe------eccEEeccCCCccceeEEcCC-CEEEEEecc
Confidence 4678999999999999876433 3456665443321110000 0111221111 1122347664 557765543
Q ss_pred CCCCceEEEEECCCCC
Q 003878 380 DAPKYKIIRVDLKEPN 395 (789)
Q Consensus 380 ~~~~~~L~~~dl~~~~ 395 (789)
...+..++.+++++..
T Consensus 527 ~~~~~~v~~v~vdG~~ 542 (599)
T PRK13613 527 EGGVQQARYVQVDGST 542 (599)
T ss_pred CCCCcceEEEecCCcC
Confidence 3446779999998764
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=89.08 E-value=48 Score=38.08 Aligned_cols=112 Identities=15% Similarity=0.263 Sum_probs=58.8
Q ss_pred EEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc-ccce-e--EEEecCCCEEEEEECC
Q 003878 304 SGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FDAQ-Y--EVIANDDTVFTFLTNK 379 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~-~~~~-~--~~~s~dG~~l~~~tn~ 379 (789)
.+.....|.+|+....+ +.||.+++.+.... +. ....+ .... + ...+|||..++-.+
T Consensus 276 nL~lDssGt~L~AsCtD-----~sIy~ynm~s~s~s-----------P~-~~~sg~~~~sf~vks~lSpd~~~l~SgS-- 336 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCTD-----NSIYFYNMRSLSIS-----------PV-AEFSGKLNSSFYVKSELSPDDCSLLSGS-- 336 (720)
T ss_pred EEEecCCCCeEEEEecC-----CcEEEEeccccCcC-----------ch-hhccCcccceeeeeeecCCCCceEeccC--
Confidence 45555667999888753 55999998774211 11 11111 0101 1 23688888665322
Q ss_pred CCCCceEEEEECCCCCC-eEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCC
Q 003878 380 DAPKYKIIRVDLKEPND-WFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNG 440 (789)
Q Consensus 380 ~~~~~~L~~~dl~~~~~-~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG 440 (789)
...+.|.+.++..+. ...++.+. .-+..+.|.+. ..-++..++|. ++.+|++..|
T Consensus 337 --sd~~ayiw~vs~~e~~~~~l~Ght--~eVt~V~w~pS~~t~v~TcSdD~--~~kiW~l~~~ 393 (720)
T KOG0321|consen 337 --SDEQAYIWVVSSPEAPPALLLGHT--REVTTVRWLPSATTPVATCSDDF--RVKIWRLSNG 393 (720)
T ss_pred --CCcceeeeeecCccCChhhhhCcc--eEEEEEeeccccCCCceeeccCc--ceEEEeccCc
Confidence 234566666666541 22222332 34556666652 33345556665 5666666544
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.94 E-value=33 Score=36.05 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=66.3
Q ss_pred CceEEEEECCCCCC--eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC--CeeEEEeec
Q 003878 383 KYKIIRVDLKEPND--WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAISA 458 (789)
Q Consensus 383 ~~~L~~~dl~~~~~--~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~--~~~v~~~s~ 458 (789)
.++|-.+|+..... ...+-+|. ..|.-+++..++.++++.+..| +-|+++|..+|+.+.++--+ ...+..+++
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~--s~Iacv~Ln~~Gt~vATaStkG-TLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHD--SDIACVALNLQGTLVATASTKG-TLIRIFDTEDGTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEccc--CceeEEEEcCCccEEEEeccCc-EEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence 47788888866441 23343444 5577788887789999999998 45899999999876665433 456777899
Q ss_pred ccCCcEEEEEEcCCCCCcEEEEEECCC
Q 003878 459 RREDSVVFISFTSFLIPGIVYQCNLKT 485 (789)
Q Consensus 459 s~d~~~l~~~~ss~~~P~~ly~~dl~t 485 (789)
||++..+.++ | .-+++..+.+..
T Consensus 235 Sp~~s~Lavs--S--dKgTlHiF~l~~ 257 (346)
T KOG2111|consen 235 SPNSSWLAVS--S--DKGTLHIFSLRD 257 (346)
T ss_pred CCCccEEEEE--c--CCCeEEEEEeec
Confidence 9999877764 3 234565555543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=88.62 E-value=16 Score=37.03 Aligned_cols=105 Identities=17% Similarity=0.186 Sum_probs=62.7
Q ss_pred cCCCEEEEEECCCCCCceEEEEECCCCC-CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec
Q 003878 368 NDDTVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL 446 (789)
Q Consensus 368 ~dG~~l~~~tn~~~~~~~L~~~dl~~~~-~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l 446 (789)
++++.+|+.+ ....|+.+|..+++ .|+.-++... ........ +.+++.. .++ +|+.+|..+|+.....
T Consensus 34 ~~~~~v~~~~----~~~~l~~~d~~tG~~~W~~~~~~~~---~~~~~~~~-~~v~v~~-~~~--~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 34 PDGGRVYVAS----GDGNLYALDAKTGKVLWRFDLPGPI---SGAPVVDG-GRVYVGT-SDG--SLYALDAKTGKVLWSI 102 (238)
T ss_dssp EETTEEEEEE----TTSEEEEEETTTSEEEEEEECSSCG---GSGEEEET-TEEEEEE-TTS--EEEEEETTTSCEEEEE
T ss_pred EeCCEEEEEc----CCCEEEEEECCCCCEEEEeeccccc---cceeeecc-ccccccc-cee--eeEecccCCcceeeee
Confidence 4677888764 35789999998876 3554443321 11233333 6776655 444 8999999889865442
Q ss_pred cc---C-CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 447 PI---E-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 447 ~~---~-~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.. + ...........+++.+++... ...++.+|+.+|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~ 143 (238)
T PF13360_consen 103 YLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGK 143 (238)
T ss_dssp EE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTE
T ss_pred ccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCc
Confidence 11 1 111112222234666766554 6799999999994
|
... |
| >PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children | Back alignment and domain information |
|---|
Probab=88.57 E-value=1.8 Score=45.15 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=22.2
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCC-ceeEEEe
Q 003878 618 RKLCIEGGSNGGLLVGACINQRPD-LFGCALA 648 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~pd-~f~a~v~ 648 (789)
+-+-++|+|.||++.=+++-+.|+ ..+-.|+
T Consensus 80 ~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlIS 111 (279)
T PF02089_consen 80 NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLIS 111 (279)
T ss_dssp T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEE
T ss_pred cceeeeeeccccHHHHHHHHHCCCCCceeEEE
Confidence 579999999999998888887765 3455554
|
Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A. |
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=88.43 E-value=1.7 Score=56.63 Aligned_cols=99 Identities=13% Similarity=-0.004 Sum_probs=61.7
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
.|.++++||..+... .|.. +...+. .++.|+.++.+|.+.. .....+++++.+.+...+..-. ..
T Consensus 1068 ~~~l~~lh~~~g~~~--~~~~-l~~~l~-~~~~v~~~~~~g~~~~----------~~~~~~l~~la~~~~~~i~~~~-~~ 1132 (1296)
T PRK10252 1068 GPTLFCFHPASGFAW--QFSV-LSRYLD-PQWSIYGIQSPRPDGP----------MQTATSLDEVCEAHLATLLEQQ-PH 1132 (1296)
T ss_pred CCCeEEecCCCCchH--HHHH-HHHhcC-CCCcEEEEECCCCCCC----------CCCCCCHHHHHHHHHHHHHhhC-CC
Confidence 366888899876532 3332 344555 6789999998875421 1122355555544333333211 12
Q ss_pred CcEEEEeeChHHHHHHHHHHh---CCCceeEEEecCC
Q 003878 618 RKLCIEGGSNGGLLVGACINQ---RPDLFGCALAHVG 651 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~---~pd~f~a~v~~~p 651 (789)
.+..+.|+|+||.++..++.+ +++....++...+
T Consensus 1133 ~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1133 GPYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred CCEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 479999999999999998875 5777777665543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.42 E-value=32 Score=35.25 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=42.6
Q ss_pred eeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEE
Q 003878 409 LESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVF 466 (789)
Q Consensus 409 i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~ 466 (789)
+.++.+-+|++++++...|++ ++++...+++.+..|+.+.+.+..++++++.+.++
T Consensus 254 v~gvrIRpD~KIlATAGWD~R--iRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmA 309 (323)
T KOG0322|consen 254 VSGVRIRPDGKILATAGWDHR--IRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMA 309 (323)
T ss_pred ccceEEccCCcEEeecccCCc--EEEEEeccCCchhhhhhhhcceeEEEeCCCCchhh
Confidence 567888888899999999985 55555556777667777777888899999876544
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=88.36 E-value=0.7 Score=52.63 Aligned_cols=73 Identities=11% Similarity=0.044 Sum_probs=53.8
Q ss_pred CeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 707 PSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 707 pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
--+|+.||..|..|++..+..+++++.+.... ....-..=++|.+.|+.+|-.+.......+.+..+.+|+++
T Consensus 354 GKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~--~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~ 426 (474)
T PF07519_consen 354 GKLILYHGWADPLIPPQGTIDYYERVVARMGG--ALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVEN 426 (474)
T ss_pred CeEEEEecCCCCccCCCcHHHHHHHHHHhccc--ccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhC
Confidence 47999999999999999999999999876200 00000123688999999997665533346788888899875
|
It also includes several bacterial homologues of unknown function. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.15 E-value=20 Score=40.49 Aligned_cols=95 Identities=21% Similarity=0.338 Sum_probs=45.9
Q ss_pred CcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEE
Q 003878 311 GQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVD 390 (789)
Q Consensus 311 G~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~d 390 (789)
|..|.... ...|.++|.+++. ....+.-.......|+++|+.+.+++.. ..-|+..+
T Consensus 117 G~LL~~~~------~~~i~~yDw~~~~--------------~i~~i~v~~vk~V~Ws~~g~~val~t~~---~i~il~~~ 173 (443)
T PF04053_consen 117 GNLLGVKS------SDFICFYDWETGK--------------LIRRIDVSAVKYVIWSDDGELVALVTKD---SIYILKYN 173 (443)
T ss_dssp SSSEEEEE------TTEEEEE-TTT----------------EEEEESS-E-EEEEE-TTSSEEEEE-S----SEEEEEE-
T ss_pred CcEEEEEC------CCCEEEEEhhHcc--------------eeeEEecCCCcEEEEECCCCEEEEEeCC---eEEEEEec
Confidence 77666554 2348899998742 2222221112456799999999988753 35566666
Q ss_pred CC-------CC-CCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEE
Q 003878 391 LK-------EP-NDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 391 l~-------~~-~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~ 434 (789)
++ .| +..-.++.+- ...+.+..|.. + ++.+.... +|..
T Consensus 174 ~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~-d--~fiYtT~~--~lkY 219 (443)
T PF04053_consen 174 LEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVE-D--CFIYTTSN--HLKY 219 (443)
T ss_dssp HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEET-T--EEEEE-TT--EEEE
T ss_pred chhcccccccCchhceEEEEEe-cceeEEEEEEc-C--EEEEEcCC--eEEE
Confidence 55 11 1122333331 24677888987 5 33333333 5654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides [] | Back alignment and domain information |
|---|
Probab=88.15 E-value=1 Score=41.85 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh
Q 003878 599 FDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ 638 (789)
Q Consensus 599 ~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 638 (789)
.+.+...++.+.++.- +.+|.+.|||.||.+|..++..
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHh
Confidence 3455566666665533 4799999999999998877664
|
Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A .... |
| >KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.89 E-value=2.2 Score=45.55 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=75.4
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHc---------CCeEEEEEeecCCCCCChhHH
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRH---------LGAVFCIANIRGGGEYGEEWH 587 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~---------~G~~v~~~~~RG~g~~g~~~~ 587 (789)
.| .+|+..-+.|...+..++.--||+.||-+|+-.. |.. +..+|.+ .-|-|++|.+.|-| |.
T Consensus 132 eG-L~iHFlhvk~p~~k~~k~v~PlLl~HGwPGsv~E--Fyk-fIPlLT~p~~hg~~~d~~FEVI~PSlPGyg-----wS 202 (469)
T KOG2565|consen 132 EG-LKIHFLHVKPPQKKKKKKVKPLLLLHGWPGSVRE--FYK-FIPLLTDPKRHGNESDYAFEVIAPSLPGYG-----WS 202 (469)
T ss_pred cc-eeEEEEEecCCccccCCcccceEEecCCCchHHH--HHh-hhhhhcCccccCCccceeEEEeccCCCCcc-----cC
Confidence 68 8898888877765444444457788999886332 221 2233321 22678888888755 55
Q ss_pred hcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEec
Q 003878 588 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 649 (789)
Q Consensus 588 ~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~ 649 (789)
++.. ..+-+...-..-..+-+...|+ ++..|.|+-+|..+...++..+|+...+.=+.
T Consensus 203 d~~s-k~GFn~~a~ArvmrkLMlRLg~---nkffiqGgDwGSiI~snlasLyPenV~GlHln 260 (469)
T KOG2565|consen 203 DAPS-KTGFNAAATARVMRKLMLRLGY---NKFFIQGGDWGSIIGSNLASLYPENVLGLHLN 260 (469)
T ss_pred cCCc-cCCccHHHHHHHHHHHHHHhCc---ceeEeecCchHHHHHHHHHhhcchhhhHhhhc
Confidence 4422 2223333222222333455566 68999999999999999999999987665443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.84 E-value=19 Score=41.74 Aligned_cols=132 Identities=15% Similarity=0.218 Sum_probs=71.6
Q ss_pred Eeeeccccceeeeeeec---------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC
Q 003878 217 LFSLVKSTIYSFWSVVS---------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS 287 (789)
Q Consensus 217 ~~~s~~~g~~~l~~~~~---------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~ 287 (789)
+.++=+.|.-||-+... ..+..+..|+|+|.-|++..++... .+.+++ ++|..+. +-.
T Consensus 232 lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da-------~~~~d~---n~v~Fys---p~G 298 (1189)
T KOG2041|consen 232 LAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDA-------DEPTDS---NKVHFYS---PYG 298 (1189)
T ss_pred EEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccc-------cCcccc---ceEEEec---cch
Confidence 44555566666633221 5556788999999999987554311 111111 1232221 112
Q ss_pred CcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEe
Q 003878 288 EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIA 367 (789)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s 367 (789)
+-+-.+..|. ..+.++.|--.|-++++.. .+-||..++.. ++ .|.+++
T Consensus 299 ~i~gtlkvpg--~~It~lsWEg~gLriA~Av------dsfiyfanIRP----------------------~y--kWgy~e 346 (1189)
T KOG2041|consen 299 HIVGTLKVPG--SCITGLSWEGTGLRIAIAV------DSFIYFANIRP----------------------EY--KWGYIE 346 (1189)
T ss_pred hheEEEecCC--ceeeeeEEcCCceEEEEEe------cceEEEEeecc----------------------cc--eEEEee
Confidence 2222233332 3466788888888888766 35578766542 11 122232
Q ss_pred cCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 368 NDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 368 ~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
. ..+|+-+.++.+.+-|+.+|..+.+
T Consensus 347 ~--TvVy~y~~~e~p~y~i~Fwdtk~ne 372 (1189)
T KOG2041|consen 347 E--TVVYVYQKEELPQYGIMFWDTKTNE 372 (1189)
T ss_pred e--EEEEEEccCCCcceEEEEEecccCh
Confidence 1 2334444455678889999987765
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.78 E-value=23 Score=37.03 Aligned_cols=153 Identities=15% Similarity=0.164 Sum_probs=80.0
Q ss_pred EEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeE-EEecCCCEEEEEECCCC
Q 003878 303 FSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDA 381 (789)
Q Consensus 303 ~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dG~~l~~~tn~~~ 381 (789)
....|-..|++++-.+.++. --++|+++|. ++..++ +.+.+.. .-.+-.++|++.+.++
T Consensus 276 ~a~dWL~gg~Q~vTaSWDRT-----AnlwDVEtge-------------~v~~Lt-GHd~ELtHcstHptQrLVvTsSrD- 335 (481)
T KOG0300|consen 276 SACDWLAGGQQMVTASWDRT-----ANLWDVETGE-------------VVNILT-GHDSELTHCSTHPTQRLVVTSSRD- 335 (481)
T ss_pred EehhhhcCcceeeeeecccc-----ceeeeeccCc-------------eecccc-CcchhccccccCCcceEEEEeccC-
Confidence 34567788999887766543 3357888753 222333 3332221 1123357788877775
Q ss_pred CCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce-eeecccCCeeEEEeeccc
Q 003878 382 PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL-LHQLPIEIGSVNAISARR 460 (789)
Q Consensus 382 ~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~-~~~l~~~~~~v~~~s~s~ 460 (789)
..|+|+-+. ..-....++... ...+.++.+.. +.-+++.+++. .+.+||+..=.. +..|-. ...+..++.+.
T Consensus 336 tTFRLWDFR--eaI~sV~VFQGH-tdtVTS~vF~~-dd~vVSgSDDr--TvKvWdLrNMRsplATIRt-dS~~NRvavs~ 408 (481)
T KOG0300|consen 336 TTFRLWDFR--EAIQSVAVFQGH-TDTVTSVVFNT-DDRVVSGSDDR--TVKVWDLRNMRSPLATIRT-DSPANRVAVSK 408 (481)
T ss_pred ceeEeccch--hhcceeeeeccc-ccceeEEEEec-CCceeecCCCc--eEEEeeeccccCcceeeec-CCccceeEeec
Confidence 456765443 211112333322 34567777766 45556676665 688999873211 111111 12233344444
Q ss_pred CCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 461 EDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 461 d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
.++.+++- -....+.+||+...
T Consensus 409 g~~iIAiP----hDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 409 GHPIIAIP----HDNRQVRLFDLNGN 430 (481)
T ss_pred CCceEEec----cCCceEEEEecCCC
Confidence 45555442 23347777887655
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.78 E-value=2.1 Score=49.20 Aligned_cols=209 Identities=11% Similarity=0.003 Sum_probs=104.4
Q ss_pred ccccceeeEEEeeeccccceeeeeeecc----------cccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccE
Q 003878 207 YLRGIFFFFYLFSLVKSTIYSFWSVVSQ----------FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHE 276 (789)
Q Consensus 207 ~~~~~~~~~~~~~s~~~g~~~l~~~~~~----------~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (789)
++++++..+.+.-..++..-+||.+.-. ....++.+.++...|+- ......
T Consensus 33 ~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaa-------------------gsasgt 93 (825)
T KOG0267|consen 33 CLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAA-------------------GSASGT 93 (825)
T ss_pred eeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcc-------------------cccCCc
Confidence 4566667777777777777788876320 01122333332222211 112235
Q ss_pred EEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee
Q 003878 277 FYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI 356 (789)
Q Consensus 277 i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~ 356 (789)
|.+|+|.+...-. .++.... ...++.|+|-|.|.+-.+ ...++.++|..... .....
T Consensus 94 iK~wDleeAk~vr-tLtgh~~---~~~sv~f~P~~~~~a~gS-----tdtd~~iwD~Rk~G--------------c~~~~ 150 (825)
T KOG0267|consen 94 IKVWDLEEAKIVR-TLTGHLL---NITSVDFHPYGEFFASGS-----TDTDLKIWDIRKKG--------------CSHTY 150 (825)
T ss_pred eeeeehhhhhhhh-hhhcccc---CcceeeeccceEEecccc-----ccccceehhhhccC--------------ceeee
Confidence 8888987543222 2222222 235778999998874222 23456667765310 11111
Q ss_pred cc--ccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEE
Q 003878 357 DG--FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 357 ~~--~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~ 434 (789)
.+ +......++|+|+++.. ++.+..+-.+|+..++-..+.-.+. ..+..+.+.+.+.|+..+..+. .+.+
T Consensus 151 ~s~~~vv~~l~lsP~Gr~v~~----g~ed~tvki~d~~agk~~~ef~~~e--~~v~sle~hp~e~Lla~Gs~d~--tv~f 222 (825)
T KOG0267|consen 151 KSHTRVVDVLRLSPDGRWVAS----GGEDNTVKIWDLTAGKLSKEFKSHE--GKVQSLEFHPLEVLLAPGSSDR--TVRF 222 (825)
T ss_pred cCCcceeEEEeecCCCceeec----cCCcceeeeeccccccccccccccc--ccccccccCchhhhhccCCCCc--eeee
Confidence 11 11122348999987652 2334667788887765111211122 3344455555345555555554 6788
Q ss_pred EECCCCceeeecccCCeeEEEeecccCCcEE
Q 003878 435 RDLKNGSLLHQLPIEIGSVNAISARREDSVV 465 (789)
Q Consensus 435 ~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l 465 (789)
||+++=+.+.........+....+++++..+
T Consensus 223 ~dletfe~I~s~~~~~~~v~~~~fn~~~~~~ 253 (825)
T KOG0267|consen 223 WDLETFEVISSGKPETDGVRSLAFNPDGKIV 253 (825)
T ss_pred eccceeEEeeccCCccCCceeeeecCCceee
Confidence 8887433222222123334455666666543
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.70 E-value=4.4 Score=47.56 Aligned_cols=70 Identities=16% Similarity=0.159 Sum_probs=47.6
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+.+||+||..|+ + .++-..+.+|.++|+.. ..+ ..- ..-+..+.+|||+...++
T Consensus 254 V~~L~fS~~G~~Ll-S------------------GG~E~VLv~Wq~~T~~k--qfL-PRL--gs~I~~i~vS~ds~~~sl 309 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLL-S------------------GGREGVLVLWQLETGKK--QFL-PRL--GSPILHIVVSPDSDLYSL 309 (792)
T ss_pred cceeEEecCCceEe-e------------------cccceEEEEEeecCCCc--ccc-ccc--CCeeEEEEEcCCCCeEEE
Confidence 68999999998887 2 23334588999998752 222 221 223567899999999887
Q ss_pred EEEcCCCCceEEEEEECCC
Q 003878 317 CIEENCDPVNKVYYCDLSA 335 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~ 335 (789)
...+ +.|.++...+
T Consensus 310 ~~~D-----NqI~li~~~d 323 (792)
T KOG1963|consen 310 VLED-----NQIHLIKASD 323 (792)
T ss_pred EecC-----ceEEEEeccc
Confidence 7653 5577766543
|
|
| >COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=87.15 E-value=1.9 Score=44.75 Aligned_cols=85 Identities=15% Similarity=0.008 Sum_probs=51.7
Q ss_pred cEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCC
Q 003878 539 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSR 618 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~ 618 (789)
|.|..+|++.|. .+.|.+ ....+. .-..++....+|-+. ......+++|..++.-..|.+- --..
T Consensus 1 ~pLF~fhp~~G~--~~~~~~-L~~~l~-~~~~v~~l~a~g~~~----------~~~~~~~l~~~a~~yv~~Ir~~-QP~G 65 (257)
T COG3319 1 PPLFCFHPAGGS--VLAYAP-LAAALG-PLLPVYGLQAPGYGA----------GEQPFASLDDMAAAYVAAIRRV-QPEG 65 (257)
T ss_pred CCEEEEcCCCCc--HHHHHH-HHHHhc-cCceeeccccCcccc----------cccccCCHHHHHHHHHHHHHHh-CCCC
Confidence 568889997664 233333 234444 336677777776442 1223445666666544434331 1124
Q ss_pred cEEEEeeChHHHHHHHHHHh
Q 003878 619 KLCIEGGSNGGLLVGACINQ 638 (789)
Q Consensus 619 ~i~i~G~S~GG~l~~~~~~~ 638 (789)
...+.|+|+||.++..+|.+
T Consensus 66 Py~L~G~S~GG~vA~evA~q 85 (257)
T COG3319 66 PYVLLGWSLGGAVAFEVAAQ 85 (257)
T ss_pred CEEEEeeccccHHHHHHHHH
Confidence 79999999999999988876
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.11 E-value=32 Score=38.94 Aligned_cols=153 Identities=20% Similarity=0.264 Sum_probs=76.5
Q ss_pred EEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCC
Q 003878 303 FSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAP 382 (789)
Q Consensus 303 ~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~ 382 (789)
..+..||||+|++.+..- ...|.++|+.... ..+.+.++.-...+...+.|=...+|+.|...
T Consensus 55 t~ik~s~DGqY~lAtG~Y----KP~ikvydlanLS------------LKFERhlDae~V~feiLsDD~SK~v~L~~DR~- 117 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLATGTY----KPQIKVYDLANLS------------LKFERHLDAEVVDFEILSDDYSKSVFLQNDRT- 117 (703)
T ss_pred ceeEecCCCcEEEEeccc----CCceEEEEcccce------------eeeeecccccceeEEEeccchhhheEeecCce-
Confidence 357889999999866432 3557888887631 11222222111122334444344555554321
Q ss_pred CceEEEEECCCCCCeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccC
Q 003878 383 KYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARRE 461 (789)
Q Consensus 383 ~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d 461 (789)
+-+....|-..+.-+|.-. . ++.... .--|++.+.. +.||+++|+.|.-+..+....+.+..++.++-
T Consensus 118 ----IefHak~G~hy~~RIP~~G-R---Dm~y~~~scDly~~gsg---~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~ 186 (703)
T KOG2321|consen 118 ----IEFHAKYGRHYRTRIPKFG-R---DMKYHKPSCDLYLVGSG---SEVYRLNLEQGRFLNPFETDSGELNVVSINEE 186 (703)
T ss_pred ----eeehhhcCeeeeeecCcCC-c---cccccCCCccEEEeecC---cceEEEEccccccccccccccccceeeeecCc
Confidence 0011111111122222211 1 111111 1124443332 37999999988876666655566666666665
Q ss_pred CcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 462 DSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 462 ~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
...+.+. +.-+.+--||..+..
T Consensus 187 hgLla~G----t~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 187 HGLLACG----TEDGVVEFWDPRDKS 208 (703)
T ss_pred cceEEec----ccCceEEEecchhhh
Confidence 5544432 345677888876654
|
|
| >PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=86.88 E-value=1.6 Score=43.49 Aligned_cols=87 Identities=17% Similarity=0.193 Sum_probs=55.0
Q ss_pred CCeEEEEEeecCCCCCChh-HHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC----C-
Q 003878 567 LGAVFCIANIRGGGEYGEE-WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR----P- 640 (789)
Q Consensus 567 ~G~~v~~~~~RG~g~~g~~-~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~----p- 640 (789)
.-..|.+|-||-..-+... -..........-.+.|+.+|.++-+++ +-+-..++++|||.|+.+...++..+ |
T Consensus 44 ~~~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~-~n~GRPfILaGHSQGs~~l~~LL~e~~~~~pl 122 (207)
T PF11288_consen 44 GVCNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLAN-YNNGRPFILAGHSQGSMHLLRLLKEEIAGDPL 122 (207)
T ss_pred cCCccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHh-cCCCCCEEEEEeChHHHHHHHHHHHHhcCchH
Confidence 3456778888854432110 000001122235689999999987776 23446899999999999999998765 2
Q ss_pred --CceeEEEecCCccc
Q 003878 641 --DLFGCALAHVGVMD 654 (789)
Q Consensus 641 --d~f~a~v~~~p~~d 654 (789)
.+.+|-+...++..
T Consensus 123 ~~rLVAAYliG~~v~~ 138 (207)
T PF11288_consen 123 RKRLVAAYLIGYPVTV 138 (207)
T ss_pred HhhhheeeecCccccH
Confidence 25666666666544
|
|
| >COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.87 E-value=14 Score=37.67 Aligned_cols=148 Identities=18% Similarity=0.083 Sum_probs=77.6
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC------CCceeEEEecCCcccccccccccCCccchhhcCCC-
Q 003878 602 FISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR------PDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCS- 674 (789)
Q Consensus 602 ~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~------pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p- 674 (789)
+..++.+|.++.-+ .++-+.||||||.-....+..+ |-+=+-+....||- .-...+...... ...-|.+
T Consensus 122 lk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN-~~~l~~de~v~~-v~~~~~~~ 197 (288)
T COG4814 122 LKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN-VGNLVPDETVTD-VLKDGPGL 197 (288)
T ss_pred HHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc-ccccCCCcchhe-eeccCccc
Confidence 34577788887443 5899999999998888777654 44444444444443 111000000000 0001111
Q ss_pred CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCC------CCCCCcHHHHHHHHHHHHhhccCCCCCCCCCc
Q 003878 675 EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADH------DDRVVPLHSLKLLATMQYVLCTSLENSPQTNP 748 (789)
Q Consensus 675 ~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~------D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 748 (789)
.....++++... +..+. ...-+|++.|+- |.+||...+.-..-.+... ++.
T Consensus 198 ~~t~y~~y~~~n--~k~v~-----------~~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~----------~ks 254 (288)
T COG4814 198 IKTPYYDYIAKN--YKKVS-----------PNTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKN----------GKS 254 (288)
T ss_pred cCcHHHHHHHhc--ceeCC-----------CCcEEEEEecccccCCcCCCceechHhHHHHHHhccC----------cce
Confidence 111123333321 11222 246899999975 6788888877776666654 555
Q ss_pred EEEEEeCC--CCcCCCCchhhHHHHHHHHHHHH
Q 003878 749 IIGRIERK--AGHGVGLPTQKMIDEAADRYGFM 779 (789)
Q Consensus 749 ~~l~~~~~--~gH~~~~~~~~~~~~~~~~~~fl 779 (789)
+.-.++++ +-|.-.-... ...+.+..||
T Consensus 255 y~e~~~~Gk~a~Hs~lhen~---~v~~yv~~FL 284 (288)
T COG4814 255 YIESLYKGKDARHSKLHENP---TVAKYVKNFL 284 (288)
T ss_pred eEEEeeeCCcchhhccCCCh---hHHHHHHHHh
Confidence 55445554 6776543322 2333445554
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=86.78 E-value=9.6 Score=40.04 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=46.8
Q ss_pred ecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec---cccceeEEEecCC
Q 003878 294 KDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID---GFDAQYEVIANDD 370 (789)
Q Consensus 294 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~s~dG 370 (789)
+.+.-+.++.-.++.|=+++|++... ...+|++|++..+ +.. ...++. +.......+|.||
T Consensus 302 ~~~~c~iWfirf~~d~~~~~la~gnq-----~g~v~vwdL~~~e----------p~~-~ttl~~s~~~~tVRQ~sfS~dg 365 (385)
T KOG1034|consen 302 DYPMCDIWFIRFAFDPWQKMLALGNQ-----SGKVYVWDLDNNE----------PPK-CTTLTHSKSGSTVRQTSFSRDG 365 (385)
T ss_pred ccCccceEEEEEeecHHHHHHhhccC-----CCcEEEEECCCCC----------Ccc-CceEEeccccceeeeeeecccC
Confidence 34444566777888899999987543 3569999998742 111 112221 1222234478898
Q ss_pred CEEEEEECCCCCCceEEEEEC
Q 003878 371 TVFTFLTNKDAPKYKIIRVDL 391 (789)
Q Consensus 371 ~~l~~~tn~~~~~~~L~~~dl 391 (789)
..|+..++. .-|+++|.
T Consensus 366 s~lv~vcdd----~~Vwrwdr 382 (385)
T KOG1034|consen 366 SILVLVCDD----GTVWRWDR 382 (385)
T ss_pred cEEEEEeCC----CcEEEEEe
Confidence 877765543 45787763
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.52 E-value=21 Score=41.38 Aligned_cols=64 Identities=11% Similarity=0.049 Sum_probs=36.2
Q ss_pred ceeeeEEEecCCEEEEEEEeC-------CeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcC
Q 003878 407 DVLESATAVNLNQMIVSYLSD-------VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTS 471 (789)
Q Consensus 407 ~~i~~v~~~~~~~lv~~~~~~-------g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss 471 (789)
..+-+..|.+++.+++....+ -.+.+..+.+= |+....+..|...+++++|...|=++++...|
T Consensus 259 m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtlkvpg~~It~lsWEg~gLriA~Avds 329 (1189)
T KOG2041|consen 259 MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTLKVPGSCITGLSWEGTGLRIAIAVDS 329 (1189)
T ss_pred cEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEEecCCceeeeeEEcCCceEEEEEecc
Confidence 456677888766655443222 12366666654 66666776666666666665444444444443
|
|
| >KOG3975 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.45 E-value=9.4 Score=38.78 Aligned_cols=116 Identities=14% Similarity=0.099 Sum_probs=59.7
Q ss_pred eEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHH-HHHcCC--eEEEEEeecCCCCCChhHHhcccc-cCC
Q 003878 520 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTI-LMRHLG--AVFCIANIRGGGEYGEEWHKGGAL-AKK 595 (789)
Q Consensus 520 ~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~-~l~~~G--~~v~~~~~RG~g~~g~~~~~~~~~-~~~ 595 (789)
..++...+-|--.+.....|+++++=|.||. ++|...++. +..+.+ .-+..+-.-|.-.....-.++... ...
T Consensus 11 l~~si~~~~~~v~~~~~~~~li~~IpGNPG~---~gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~e 87 (301)
T KOG3975|consen 11 LPTSILTLKPWVTKSGEDKPLIVWIPGNPGL---LGFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEE 87 (301)
T ss_pred CcccceeeeeeeccCCCCceEEEEecCCCCc---hhHHHHHHHHHHHhcccccceeEEeccccccCCccccccccccccc
Confidence 4444444444433345678999999887764 455554433 223233 112222222222222111111111 112
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh
Q 003878 596 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ 638 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 638 (789)
.-..+|.+.---..++.....-.||.++|||-|+++++.++-.
T Consensus 88 ifsL~~QV~HKlaFik~~~Pk~~ki~iiGHSiGaYm~Lqil~~ 130 (301)
T KOG3975|consen 88 IFSLQDQVDHKLAFIKEYVPKDRKIYIIGHSIGAYMVLQILPS 130 (301)
T ss_pred ccchhhHHHHHHHHHHHhCCCCCEEEEEecchhHHHHHHHhhh
Confidence 2334555554333344444555799999999999999998763
|
|
| >cd00741 Lipase Lipase | Back alignment and domain information |
|---|
Probab=86.00 E-value=1.1 Score=42.41 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=21.5
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCC
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPD 641 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd 641 (789)
...+|.+.|||+||.++..++.+.+.
T Consensus 26 p~~~i~v~GHSlGg~lA~l~a~~~~~ 51 (153)
T cd00741 26 PDYKIHVTGHSLGGALAGLAGLDLRG 51 (153)
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHHHh
Confidence 45799999999999999988776543
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=85.82 E-value=65 Score=36.06 Aligned_cols=136 Identities=10% Similarity=0.094 Sum_probs=78.0
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCC
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDA 381 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~ 381 (789)
..+++..|+...++-... ...+.+++ +. ...|.+.+... ..-..+.|.| .+++-+.
T Consensus 371 lwgla~hps~~q~~T~gq-----dk~v~lW~-~~-------------k~~wt~~~~d~-~~~~~fhpsg-~va~Gt~--- 426 (626)
T KOG2106|consen 371 LWGLATHPSKNQLLTCGQ-----DKHVRLWN-DH-------------KLEWTKIIEDP-AECADFHPSG-VVAVGTA--- 426 (626)
T ss_pred eeeEEcCCChhheeeccC-----cceEEEcc-CC-------------ceeEEEEecCc-eeEeeccCcc-eEEEeec---
Confidence 346677777777654432 23455565 21 12254544322 2223477877 6665332
Q ss_pred CCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEeeccc
Q 003878 382 PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARR 460 (789)
Q Consensus 382 ~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s~ 460 (789)
.++.+++|.++.. ...+ +.+...|.-+..++++..++..+.|+.--||+++.+ |....++-.- ..-+..+.|+.
T Consensus 427 -~G~w~V~d~e~~~-lv~~--~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~-g~~y~r~~k~~gs~ithLDwS~ 501 (626)
T KOG2106|consen 427 -TGRWFVLDTETQD-LVTI--HTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN-GRKYSRVGKCSGSPITHLDWSS 501 (626)
T ss_pred -cceEEEEecccce-eEEE--EecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC-CcEEEEeeeecCceeEEeeecC
Confidence 3688899988744 2222 333467888888887788888888875455555544 4432232211 13356778898
Q ss_pred CCcEEE
Q 003878 461 EDSVVF 466 (789)
Q Consensus 461 d~~~l~ 466 (789)
|++.+.
T Consensus 502 Ds~~~~ 507 (626)
T KOG2106|consen 502 DSQFLV 507 (626)
T ss_pred CCceEE
Confidence 888554
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.74 E-value=61 Score=35.64 Aligned_cols=184 Identities=8% Similarity=0.075 Sum_probs=98.9
Q ss_pred cccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCcc
Q 003878 273 LYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPF 352 (789)
Q Consensus 273 ~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 352 (789)
...+|.+|++.++.....+-. +..-+..+.|.|.--.++++... ...+-+.|... +.. ....|
T Consensus 264 aD~TV~lWD~~~g~p~~s~~~----~~k~Vq~l~wh~~~p~~LLsGs~----D~~V~l~D~R~-~~~--------s~~~w 326 (463)
T KOG0270|consen 264 ADKTVKLWDVDTGKPKSSITH----HGKKVQTLEWHPYEPSVLLSGSY----DGTVALKDCRD-PSN--------SGKEW 326 (463)
T ss_pred CCceEEEEEcCCCCcceehhh----cCCceeEEEecCCCceEEEeccc----cceEEeeeccC-ccc--------cCceE
Confidence 456799999988766543321 22335678899877776665432 34577777764 100 11222
Q ss_pred EeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC-CeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeE
Q 003878 353 VKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKY 430 (789)
Q Consensus 353 ~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~-~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~ 430 (789)
.- ..+.+-..|.|.....++.+.. ++.|+-+|+...+ ....+..|. ..|.++.++.. ..++.+...++
T Consensus 327 k~---~g~VEkv~w~~~se~~f~~~td---dG~v~~~D~R~~~~~vwt~~AHd--~~ISgl~~n~~~p~~l~t~s~d~-- 396 (463)
T KOG0270|consen 327 KF---DGEVEKVAWDPHSENSFFVSTD---DGTVYYFDIRNPGKPVWTLKAHD--DEISGLSVNIQTPGLLSTASTDK-- 396 (463)
T ss_pred Ee---ccceEEEEecCCCceeEEEecC---CceEEeeecCCCCCceeEEEecc--CCcceEEecCCCCcceeeccccc--
Confidence 21 1122334587766655555543 4689999998764 233455665 46788887763 35666666665
Q ss_pred EEEEEECC--CCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 431 VLQIRDLK--NGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 431 ~L~~~dl~--tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
.+.+|++. .++.+..-.+..+....++..++-. ..+++.+... .+..+|..+.
T Consensus 397 ~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a-~~la~GG~k~--~~~vwd~~~~ 451 (463)
T KOG0270|consen 397 VVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVA-FTLAFGGEKA--VLRVWDIFTN 451 (463)
T ss_pred eEEEEeecCCCCcccccccccccceeecccCCCcc-eEEEecCccc--eEEEeecccC
Confidence 45566654 2222111111223333444555444 2334443222 5666666554
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.61 E-value=23 Score=35.79 Aligned_cols=74 Identities=19% Similarity=0.187 Sum_probs=49.5
Q ss_pred EecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeee
Q 003878 366 IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQ 445 (789)
Q Consensus 366 ~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~ 445 (789)
..|....+++. +++..+|.+|++++. ++..+... ..++..+.....+.-+++..+|| .+++||.++++.+..
T Consensus 122 ldP~enSi~~A----gGD~~~y~~dlE~G~-i~r~~rGH-tDYvH~vv~R~~~~qilsG~EDG--tvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 122 LDPSENSILFA----GGDGVIYQVDLEDGR-IQREYRGH-TDYVHSVVGRNANGQILSGAEDG--TVRVWDTKTQKHVSM 193 (325)
T ss_pred eccCCCcEEEe----cCCeEEEEEEecCCE-EEEEEcCC-cceeeeeeecccCcceeecCCCc--cEEEEeccccceeEE
Confidence 34544555542 367899999999997 55444332 25676666533355677888888 688899999887655
Q ss_pred cc
Q 003878 446 LP 447 (789)
Q Consensus 446 l~ 447 (789)
|.
T Consensus 194 ie 195 (325)
T KOG0649|consen 194 IE 195 (325)
T ss_pred ec
Confidence 54
|
|
| >PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function | Back alignment and domain information |
|---|
Probab=85.36 E-value=2.7 Score=33.30 Aligned_cols=50 Identities=14% Similarity=0.150 Sum_probs=29.4
Q ss_pred CCCcEEEEEEecCCCceEEEEEEEecCC--CCCCCCccEEEEEcCCCCccCCC
Q 003878 504 SEFHVHQVFVPSKDGSTKIPMFIVSKKN--IKLDGSHPCLLYGYGGFNISVTP 554 (789)
Q Consensus 504 ~~~~~~~~~~~s~dg~~~i~~~l~~p~~--~~~~~~~P~ll~~hGg~~~~~~~ 554 (789)
.+|.+|+..+++.|| .-+.++-+.++. ....++.|.|++.||-.+++..+
T Consensus 8 ~GY~~E~h~V~T~DG-YiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ss~~w 59 (63)
T PF04083_consen 8 HGYPCEEHEVTTEDG-YILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQSSDDW 59 (63)
T ss_dssp TT---EEEEEE-TTS-EEEEEEEE-SBTTCTTTTTT--EEEEE--TT--GGGG
T ss_pred cCCCcEEEEEEeCCC-cEEEEEEccCCCCCcccCCCCCcEEEECCcccChHHH
Confidence 367889999999999 998888776655 22456789999999987766543
|
The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B. |
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=85.27 E-value=51 Score=34.33 Aligned_cols=211 Identities=14% Similarity=0.084 Sum_probs=107.1
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc--EEEEecCCCCe---eEEEEEEec-C
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED--ILCWKDPEHPK---YIFSGHVTE-D 310 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~--~~~~~~~~~~~---~~~~~~~Sp-D 310 (789)
..-+-|.||.+..+= ..- ......+++|+++....+- ..+.....+.. -+.++.|.. |
T Consensus 99 ~tK~~wiPd~~g~~p-dlL---------------ATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d 162 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYP-DLL---------------ATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVD 162 (364)
T ss_pred ccceEecCCccccCc-chh---------------hcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCC
Confidence 356889999876651 110 1223357788887543221 11111111111 134556655 3
Q ss_pred CcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeE-EEecCCCEEEEEECCCCCCceEEEE
Q 003878 311 GQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE-VIANDDTVFTFLTNKDAPKYKIIRV 389 (789)
Q Consensus 311 G~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dG~~l~~~tn~~~~~~~L~~~ 389 (789)
-++|..++-+ ++.. ++|++++.. +.....++..-...+. .|+..|..++.... .++.+.++
T Consensus 163 p~~igtSSiD---TTCT--iWdie~~~~----------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvg---aDGSvRmF 224 (364)
T KOG0290|consen 163 PNLIGTSSID---TTCT--IWDIETGVS----------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVG---ADGSVRMF 224 (364)
T ss_pred cceeEeeccc---CeEE--EEEEeeccc----------cceeeEEEecCcceeEEEeccCccceEEEec---CCCcEEEE
Confidence 3444333322 2344 456665411 1112334443222332 36665555554332 35778888
Q ss_pred ECCCCCCeEEeccCCC--CceeeeEEEecCCE-EEEEEEeCCeEEEEEEECCC-CceeeecccCCeeEEEeecccCCcEE
Q 003878 390 DLKEPNDWFEVIPEAE--RDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLKN-GSLLHQLPIEIGSVNAISARREDSVV 465 (789)
Q Consensus 390 dl~~~~~~~~l~~~~~--~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl~t-G~~~~~l~~~~~~v~~~s~s~d~~~l 465 (789)
||...+. .+++-+.+ ...+.-++|.+.+- +++..-.+ ...|.++|+.. +..+-+|..+.+.|.+++|.|.+..-
T Consensus 225 DLR~leH-STIIYE~p~~~~pLlRLswnkqDpnymATf~~d-S~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~h 302 (364)
T KOG0290|consen 225 DLRSLEH-STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD-SNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSH 302 (364)
T ss_pred Eeccccc-ceEEecCCCCCCcceeeccCcCCchHHhhhhcC-CceEEEEEecCCCcceehhhcCcccccceEecCCCCce
Confidence 9887652 33433332 35667788877433 22222223 35788888753 22334555567888899998887766
Q ss_pred EEEEcCCCCCcEEEEEECCCC
Q 003878 466 FISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 466 ~~~~ss~~~P~~ly~~dl~tg 486 (789)
+.+.. .-.....||+...
T Consensus 303 ictaG---DD~qaliWDl~q~ 320 (364)
T KOG0290|consen 303 ICTAG---DDCQALIWDLQQM 320 (364)
T ss_pred eeecC---CcceEEEEecccc
Confidence 65543 2345666776543
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=85.03 E-value=51 Score=34.19 Aligned_cols=195 Identities=11% Similarity=0.060 Sum_probs=105.8
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.++.+.+|| .||-+.. ......|++.++.++..... ...+. ..+..++..- +..|+-.
T Consensus 48 QGL~~~~~g-~LyESTG----------------~yG~S~l~~~d~~tg~~~~~--~~l~~-~~FgEGit~~--~d~l~qL 105 (264)
T PF05096_consen 48 QGLEFLDDG-TLYESTG----------------LYGQSSLRKVDLETGKVLQS--VPLPP-RYFGEGITIL--GDKLYQL 105 (264)
T ss_dssp EEEEEEETT-EEEEEEC----------------STTEEEEEEEETTTSSEEEE--EE-TT-T--EEEEEEE--TTEEEEE
T ss_pred ccEEecCCC-EEEEeCC----------------CCCcEEEEEEECCCCcEEEE--EECCc-cccceeEEEE--CCEEEEE
Confidence 678887665 5655532 23456788999988643222 22222 3334455554 4455544
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCe
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDW 397 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~ 397 (789)
+.. ....+++|.++.+ ..... .-....+. ...||+.|++ ++ +..+|+.+|.++.+..
T Consensus 106 TWk----~~~~f~yd~~tl~-------------~~~~~-~y~~EGWG-Lt~dg~~Li~-SD---GS~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 106 TWK----EGTGFVYDPNTLK-------------KIGTF-PYPGEGWG-LTSDGKRLIM-SD---GSSRLYFLDPETFKEV 162 (264)
T ss_dssp ESS----SSEEEEEETTTTE-------------EEEEE-E-SSS--E-EEECSSCEEE-E----SSSEEEEE-TTT-SEE
T ss_pred Eec----CCeEEEEccccce-------------EEEEE-ecCCcceE-EEcCCCEEEE-EC---CccceEEECCcccceE
Confidence 443 3567889987731 11111 10112333 3568887775 32 2468999998775421
Q ss_pred EE--ecc-CCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC---------------CeeEEEeecc
Q 003878 398 FE--VIP-EAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE---------------IGSVNAISAR 459 (789)
Q Consensus 398 ~~--l~~-~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~---------------~~~v~~~s~s 459 (789)
+. +.- ..+-..+..+.+.+ +.+++-.-. ...|.++|+++|+....+.+. .....+++.+
T Consensus 163 ~~i~V~~~g~pv~~LNELE~i~-G~IyANVW~--td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd 239 (264)
T PF05096_consen 163 RTIQVTDNGRPVSNLNELEYIN-GKIYANVWQ--TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYD 239 (264)
T ss_dssp EEEE-EETTEE---EEEEEEET-TEEEEEETT--SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEE
T ss_pred EEEEEEECCEECCCcEeEEEEc-CEEEEEeCC--CCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEe
Confidence 21 211 11223466788886 788865543 458999999999876554321 2346788888
Q ss_pred cCCcEEEEEEcCCCCCcEEEEEEC
Q 003878 460 REDSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 460 ~d~~~l~~~~ss~~~P~~ly~~dl 483 (789)
+..+.++++--- =|.+|++.+
T Consensus 240 ~~~~~l~vTGK~---Wp~lyeV~l 260 (264)
T PF05096_consen 240 PETDRLFVTGKL---WPKLYEVKL 260 (264)
T ss_dssp TTTTEEEEEETT----SEEEEEEE
T ss_pred CCCCEEEEEeCC---CCceEEEEE
Confidence 899988886543 366666544
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG4782 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.95 E-value=3.2 Score=44.46 Aligned_cols=111 Identities=14% Similarity=0.162 Sum_probs=63.7
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCe--EEEEEeecCCC-CCChhHHhcccccCCcchHHHHHHHHHHHHHcC
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGA--VFCIANIRGGG-EYGEEWHKGGALAKKQNCFDDFISASEYLISAG 613 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~--~v~~~~~RG~g-~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~ 613 (789)
..-++|++||- +.+....-. ...+.....|+ +.+.+-...+| -+|...- ++.-..+-.++...+++|...+
T Consensus 115 ~k~vlvFvHGf-Nntf~dav~-R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~D----reS~~~Sr~aLe~~lr~La~~~ 188 (377)
T COG4782 115 AKTVLVFVHGF-NNTFEDAVY-RTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYD----RESTNYSRPALERLLRYLATDK 188 (377)
T ss_pred CCeEEEEEccc-CCchhHHHH-HHHHHHhhcCCCcceEEEEcCCCCeeeecccc----hhhhhhhHHHHHHHHHHHHhCC
Confidence 34699999994 333222111 12334433443 44555544333 2332211 1122334577888888888775
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHh----C----CCceeEEEecCCcccc
Q 003878 614 YTQSRKLCIEGGSNGGLLVGACINQ----R----PDLFGCALAHVGVMDM 655 (789)
Q Consensus 614 ~~d~~~i~i~G~S~GG~l~~~~~~~----~----pd~f~a~v~~~p~~d~ 655 (789)
- -.+|.|+.||||.++++.++-| . +..|+-+|.-+|=.|.
T Consensus 189 ~--~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~ 236 (377)
T COG4782 189 P--VKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDV 236 (377)
T ss_pred C--CceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCCh
Confidence 4 3699999999999998876543 2 2246777777775553
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.54 E-value=64 Score=34.90 Aligned_cols=191 Identities=14% Similarity=0.056 Sum_probs=101.3
Q ss_pred Eeeeccccceeeeeeeccc-ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCC--cccEEEEEECCCCCCCcEEEE
Q 003878 217 LFSLVKSTIYSFWSVVSQF-KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN--LYHEFYYHFLGTKQSEDILCW 293 (789)
Q Consensus 217 ~~~s~~~g~~~l~~~~~~~-~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~lg~~~~~~~~~~ 293 (789)
+..+..+|..|+|..-... -..-+.|-.-|.+++-.+...... ....-.+ +-..+-.|++.+. ..||
T Consensus 118 Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p------~Iva~GGke~~n~lkiwdle~~----~qiw 187 (412)
T KOG3881|consen 118 LITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDP------YIVATGGKENINELKIWDLEQS----KQIW 187 (412)
T ss_pred EEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCC------ceEecCchhcccceeeeecccc----eeee
Confidence 7788999999999984311 123455656677777666543221 0010011 1234666676543 3455
Q ss_pred ecCCC---------CeeEEEEEEecC--CcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-cccc
Q 003878 294 KDPEH---------PKYIFSGHVTED--GQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDA 361 (789)
Q Consensus 294 ~~~~~---------~~~~~~~~~SpD--G~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~ 361 (789)
...+- |.|+.++.|-++ ...++-.+ + ...+.++|...+ ..|+....- +...
T Consensus 188 ~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T-~----~hqvR~YDt~~q------------RRPV~~fd~~E~~i 250 (412)
T KOG3881|consen 188 SAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATIT-R----YHQVRLYDTRHQ------------RRPVAQFDFLENPI 250 (412)
T ss_pred eccCCCCccccceeeeeeccceecCCCCCceEEEEe-c----ceeEEEecCccc------------CcceeEeccccCcc
Confidence 54321 345555666655 44443322 2 466888887753 122222111 1111
Q ss_pred eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCc
Q 003878 362 QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGS 441 (789)
Q Consensus 362 ~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~ 441 (789)
......|+|..+|+ .|. ..+|..+|+.++.-...-+ ..-...+.++...+...++++..-|- -|+++|.++.+
T Consensus 251 s~~~l~p~gn~Iy~-gn~---~g~l~~FD~r~~kl~g~~~-kg~tGsirsih~hp~~~~las~GLDR--yvRIhD~ktrk 323 (412)
T KOG3881|consen 251 SSTGLTPSGNFIYT-GNT---KGQLAKFDLRGGKLLGCGL-KGITGSIRSIHCHPTHPVLASCGLDR--YVRIHDIKTRK 323 (412)
T ss_pred eeeeecCCCcEEEE-ecc---cchhheecccCceeecccc-CCccCCcceEEEcCCCceEEeeccce--eEEEeecccch
Confidence 11224577777664 433 3578888988764111101 11124577888887556777665553 57888988644
|
|
| >COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.67 E-value=3.1 Score=45.27 Aligned_cols=97 Identities=12% Similarity=0.041 Sum_probs=54.1
Q ss_pred EEEEEcCCCCccCCCCCCHHHHHHHHcCCeE---EEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 540 CLLYGYGGFNISVTPSFSVSRTILMRHLGAV---FCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 540 ~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~---v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
.++++||.. .. ...|.+ +..++...|+. +..+...+...-+. ....-+-+.+-++...... -
T Consensus 61 pivlVhG~~-~~-~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~ql~~~V~~~l~~~--g 125 (336)
T COG1075 61 PIVLVHGLG-GG-YGNFLP-LDYRLAILGWLTNGVYAFELSGGDGTYS----------LAVRGEQLFAYVDEVLAKT--G 125 (336)
T ss_pred eEEEEccCc-CC-cchhhh-hhhhhcchHHHhcccccccccccCCCcc----------ccccHHHHHHHHHHHHhhc--C
Confidence 677888862 21 223332 22335556665 66666654311110 0111122333333333332 2
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCC--CceeEEEecCC
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRP--DLFGCALAHVG 651 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~p--d~f~a~v~~~p 651 (789)
..++.+.|||+||.++-.++...+ .+.+.++...+
T Consensus 126 a~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~t 162 (336)
T COG1075 126 AKKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGT 162 (336)
T ss_pred CCceEEEeecccchhhHHHHhhcCccceEEEEEEecc
Confidence 379999999999999998888877 67777776543
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=83.53 E-value=90 Score=36.48 Aligned_cols=85 Identities=12% Similarity=0.108 Sum_probs=45.2
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCc-ccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCC
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGL-EGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKD 380 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~ 380 (789)
+..+..|+||-++++...... ...|++.-+.....+. ..+ .....+.......-..|..+ ..|++++...
T Consensus 436 I~~lrvSrDG~R~Avi~~~~g--~~~V~va~V~R~~~G~P~~L------~~~~~~~~~~~~~sl~W~~~-~sl~V~~~~~ 506 (573)
T PRK13614 436 VKELRVSREGVRALVISEQNG--KSRVQVAGIVRNEDGTPREL------TAPITLAADSDADTGAWVGD-STVVVTKASA 506 (573)
T ss_pred eEEEEECCCccEEEEEEEeCC--ccEEEEEEEEeCCCCCeEEc------cCceecccCCCcceeEEcCC-CEEEEEeccC
Confidence 678999999999998875443 3457765443211110 000 00111111111122347654 5677777654
Q ss_pred CCCceEEEEECCCCC
Q 003878 381 APKYKIIRVDLKEPN 395 (789)
Q Consensus 381 ~~~~~L~~~dl~~~~ 395 (789)
..+..++.+.+..+.
T Consensus 507 ~~~~~~~~v~v~~g~ 521 (573)
T PRK13614 507 TSNVVPELLSVDAGQ 521 (573)
T ss_pred CCcceEEEEEeCCCC
Confidence 456677777875543
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=83.39 E-value=11 Score=32.15 Aligned_cols=35 Identities=11% Similarity=0.092 Sum_probs=19.7
Q ss_pred eEEeCCCCcEEEEEEec-------------CCceEEEEEEEEcCCCce
Q 003878 136 KVSVSEDAKYLAYALSY-------------SGSDWATIKLMRIEDQIV 170 (789)
Q Consensus 136 ~~~~SpDg~~la~~~~~-------------~g~~~~~i~v~dl~tg~~ 170 (789)
++.+++|+..|.|+-+. .|.....|..+|..|++.
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~ 49 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKET 49 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeE
Confidence 45677776666666531 134467899999999964
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2 | Back alignment and domain information |
|---|
Probab=83.23 E-value=1.6 Score=48.44 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC------ceeEEEecCC
Q 003878 597 NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD------LFGCALAHVG 651 (789)
Q Consensus 597 ~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd------~f~a~v~~~p 651 (789)
.-+..+...++.+.+.. ..++.|+||||||+++...+...+. .+++.|+.++
T Consensus 101 ~~~~~lk~~ie~~~~~~---~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~ 158 (389)
T PF02450_consen 101 EYFTKLKQLIEEAYKKN---GKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGT 158 (389)
T ss_pred HHHHHHHHHHHHHHHhc---CCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCC
Confidence 33556666666665542 5799999999999999998887643 3666666544
|
3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=82.70 E-value=30 Score=37.37 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=46.3
Q ss_pred EEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceee
Q 003878 365 VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLH 444 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~ 444 (789)
.|+||+++ +++++++ .+|.+......-.... +.-+....+..+++.+ ++++++..-|+ .|++||+.+|+.+.
T Consensus 158 avS~D~~~-IitaDRD---EkIRvs~ypa~f~Ies-fclGH~eFVS~isl~~-~~~LlS~sGD~--tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 158 AVSPDDQF-IITADRD---EKIRVSRYPATFVIES-FCLGHKEFVSTISLTD-NYLLLSGSGDK--TLRLWDITSGKLLD 229 (390)
T ss_pred eecCCCCE-EEEecCC---ceEEEEecCcccchhh-hccccHhheeeeeecc-CceeeecCCCC--cEEEEecccCCccc
Confidence 48999864 4566664 3444444333221111 1222235778888887 78877766554 89999999998765
Q ss_pred eccc
Q 003878 445 QLPI 448 (789)
Q Consensus 445 ~l~~ 448 (789)
.+.+
T Consensus 230 t~dl 233 (390)
T KOG3914|consen 230 TCDL 233 (390)
T ss_pred ccch
Confidence 5443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.62 E-value=1.2e+02 Score=36.36 Aligned_cols=155 Identities=8% Similarity=0.053 Sum_probs=87.5
Q ss_pred EEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc--c-eeEEEecCCCEEEEEECC
Q 003878 303 FSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD--A-QYEVIANDDTVFTFLTNK 379 (789)
Q Consensus 303 ~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~--~-~~~~~s~dG~~l~~~tn~ 379 (789)
.-.++||.+++++....+ .+|.++.--..... . .....-.+. . ..-.|++||.+|| .
T Consensus 209 t~~~~spn~~~~Aa~d~d-----GrI~vw~d~~~~~~---------~--~t~t~lHWH~~~V~~L~fS~~G~~Ll----S 268 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSD-----GRILVWRDFGSSDD---------S--ETCTLLHWHHDEVNSLSFSSDGAYLL----S 268 (792)
T ss_pred eeEEeccccceEEEeccC-----CcEEEEeccccccc---------c--ccceEEEecccccceeEEecCCceEe----e
Confidence 346889999999876543 23555532210000 0 111111111 1 1234899999887 3
Q ss_pred CCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec---ccC-------
Q 003878 380 DAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL---PIE------- 449 (789)
Q Consensus 380 ~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l---~~~------- 449 (789)
++..+-|.++.+++++ +.++|-- ...|..+.+++|+.++.....|. +|.++...+-+....| ..+
T Consensus 269 GG~E~VLv~Wq~~T~~--kqfLPRL-gs~I~~i~vS~ds~~~sl~~~DN--qI~li~~~dl~~k~tIsgi~~~~~~~k~~ 343 (792)
T KOG1963|consen 269 GGREGVLVLWQLETGK--KQFLPRL-GSPILHIVVSPDSDLYSLVLEDN--QIHLIKASDLEIKSTISGIKPPTPSTKTR 343 (792)
T ss_pred cccceEEEEEeecCCC--ccccccc-CCeeEEEEEcCCCCeEEEEecCc--eEEEEeccchhhhhhccCccCCCcccccc
Confidence 4455789999999987 6777765 47788999998766766666664 4555544222211111 111
Q ss_pred -CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 450 -IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 450 -~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
.+-...++.+|..+.+.+ ...|+.+..||+-+.
T Consensus 344 ~~~l~t~~~idpr~~~~vl----n~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 344 PQSLTTGVSIDPRTNSLVL----NGHPGHVQFYDLYTD 377 (792)
T ss_pred ccccceeEEEcCCCCceee----cCCCceEEEEecccc
Confidence 222345566664443333 146778888887654
|
|
| >PF03283 PAE: Pectinacetylesterase | Back alignment and domain information |
|---|
Probab=82.56 E-value=1 Score=49.25 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHH
Q 003878 600 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACI 636 (789)
Q Consensus 600 ~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~ 636 (789)
.-+.+++++|.++|+.++++|.+.|.||||+-+..-+
T Consensus 138 ~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~ 174 (361)
T PF03283_consen 138 RILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHA 174 (361)
T ss_pred HHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHH
Confidence 4577899999999999999999999999998877643
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=81.47 E-value=1.1e+02 Score=38.26 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=24.7
Q ss_pred eEEeCCCCcEEEEEEecCCceEEEEEEEEcC
Q 003878 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIE 166 (789)
Q Consensus 136 ~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~ 166 (789)
+++|--||+++|.+.-....+...|+|||-+
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE 230 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE 230 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEeccc
Confidence 3778899999998765555555789999987
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.42 E-value=69 Score=33.02 Aligned_cols=150 Identities=9% Similarity=0.045 Sum_probs=82.3
Q ss_pred EEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCC
Q 003878 215 FYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT 284 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~ 284 (789)
..++.+..+-+.++-.+.. ++...+.+.|||+++...+. ...+|+++.++.
T Consensus 129 ~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vg-------------------ds~~Vf~y~id~ 189 (344)
T KOG4532|consen 129 FPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVG-------------------DSRRVFRYAIDD 189 (344)
T ss_pred cceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEec-------------------CCCcceEEEeCC
Confidence 3466666666666655544 34457889999999887652 334688888876
Q ss_pred CCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-----ccc
Q 003878 285 KQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-----DGF 359 (789)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-----~~~ 359 (789)
....-+-+++.+..+.. ...+||......|....++ .+-++|+..-. .|..... ...
T Consensus 190 ~sey~~~~~~a~t~D~g-F~~S~s~~~~~FAv~~Qdg-----~~~I~DVR~~~------------tpm~~~sstrp~hnG 251 (344)
T KOG4532|consen 190 ESEYIENIYEAPTSDHG-FYNSFSENDLQFAVVFQDG-----TCAIYDVRNMA------------TPMAEISSTRPHHNG 251 (344)
T ss_pred ccceeeeeEecccCCCc-eeeeeccCcceEEEEecCC-----cEEEEEecccc------------cchhhhcccCCCCCC
Confidence 54443334544433322 3567887777776665433 36667765421 0110000 011
Q ss_pred cceeEEEecCC-CEEEEEECCCCCCceEEEEECCCCCCeEEeccCC
Q 003878 360 DAQYEVIANDD-TVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA 404 (789)
Q Consensus 360 ~~~~~~~s~dG-~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~ 404 (789)
..+..-+++.| -.|+|.+. ....+.++|+.+....+.+++..
T Consensus 252 a~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~R~~~~~q~I~i~~ 294 (344)
T KOG4532|consen 252 AFRVCRFSLYGLLDLLFISE---HFSRVHVVDTRNYVNHQVIVIPD 294 (344)
T ss_pred ceEEEEecCCCcceEEEEec---CcceEEEEEcccCceeeEEecCc
Confidence 11233467644 23555543 24678888988776445454443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.90 E-value=78 Score=33.25 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=29.7
Q ss_pred CceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCC
Q 003878 116 KAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ 168 (789)
Q Consensus 116 ~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg 168 (789)
+.++.++...+... +..++++.++||-+.| |++.. .-..|..+++++.
T Consensus 71 ~y~~~i~akpi~g~-~~nvS~LTynp~~rtL-Fav~n---~p~~iVElt~~Gd 118 (316)
T COG3204 71 EYRARIDAKPILGE-TANVSSLTYNPDTRTL-FAVTN---KPAAIVELTKEGD 118 (316)
T ss_pred CceEEEeccccccc-cccccceeeCCCcceE-EEecC---CCceEEEEecCCc
Confidence 45666666543221 2338899999999887 44432 2357777776654
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=80.79 E-value=32 Score=39.94 Aligned_cols=116 Identities=8% Similarity=0.006 Sum_probs=62.4
Q ss_pred CCEEEEEECCCC---CCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCC------eEEEEEEECCCC
Q 003878 370 DTVFTFLTNKDA---PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV------KYVLQIRDLKNG 440 (789)
Q Consensus 370 G~~l~~~tn~~~---~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g------~~~L~~~dl~tG 440 (789)
++.+|+...... ....+..+|+.+.+ |+.+.+......-......+ +.+++.+..+. ...++++|+.++
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNK-WSKGSPLPISHYGGCAIYHD-GKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCe-eeecCCCCccccCceEEEEC-CEEEEECCccCCCCCcccceEEEecCCCC
Confidence 457777654311 12568889988776 87765432212222233334 78877664321 245899999877
Q ss_pred ceeeecc-c--CCeeEEEeecccCCcEEEEEEcCCCC---CcEEEEEECCCCCceEEEee
Q 003878 441 SLLHQLP-I--EIGSVNAISARREDSVVFISFTSFLI---PGIVYQCNLKTETPEMKIFR 494 (789)
Q Consensus 441 ~~~~~l~-~--~~~~v~~~s~s~d~~~l~~~~ss~~~---P~~ly~~dl~tg~~~~~~l~ 494 (789)
+. ..+. . +........ .+ +.+++ +.+... -..++.||+.++ +++.+.
T Consensus 467 ~W-~~~~~~~~~r~~~~~~~--~~-~~iyv-~GG~~~~~~~~~v~~yd~~~~--~W~~~~ 519 (534)
T PHA03098 467 KW-TELSSLNFPRINASLCI--FN-NKIYV-VGGDKYEYYINEIEVYDDKTN--TWTLFC 519 (534)
T ss_pred ce-eeCCCCCcccccceEEE--EC-CEEEE-EcCCcCCcccceeEEEeCCCC--EEEecC
Confidence 65 3333 2 222111111 23 34443 333332 358899999887 466554
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=80.73 E-value=1.2e+02 Score=35.27 Aligned_cols=61 Identities=13% Similarity=0.052 Sum_probs=39.1
Q ss_pred CceEEEEECCCCC-CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC
Q 003878 383 KYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE 449 (789)
Q Consensus 383 ~~~L~~~dl~~~~-~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~ 449 (789)
.+.|..+|+.+++ .|+.-.+. ....+..... +.+++....+| .|+.+|.+||+.+-+..++
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~---p~~~~~l~t~-g~lvf~g~~~G--~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDF---PLWGGVLATA-GDLVFYGTLEG--YFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCC---CCCCcceEEC-CcEEEEECCCC--eEEEEECCCCCEeEEEeCC
Confidence 4579999999886 45432221 1223333344 55777766666 7999999999976555554
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 789 | ||||
| 3ddu_A | 709 | Prolyl Oligopeptidase With Gsk552 Length = 709 | 0.0 | ||
| 1qfs_A | 710 | Prolyl Oligopeptidase From Porcine Muscle With Cova | 0.0 | ||
| 1vz3_A | 710 | Prolyl Oligopeptidase From Porcine Brain, T597c Mut | 0.0 | ||
| 1e8m_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Mutant, C | 0.0 | ||
| 1h2x_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Y473f Mut | 0.0 | ||
| 1o6g_A | 710 | Prolyl Oligopeptidase From Porcine Brain, D641n Mut | 0.0 | ||
| 1e5t_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Mutant Le | 0.0 | ||
| 1o6f_A | 710 | Prolyl Oligopeptidase From Porcine Brain, D641a Mut | 0.0 | ||
| 4ax4_A | 710 | Prolyl Oligopeptidase From Porcine Brain, H680a Mut | 0.0 | ||
| 1vz2_A | 710 | Prolyl Oligopeptidase From Porcine Brain, Y73c/v427 | 0.0 | ||
| 1qfm_A | 710 | Prolyl Oligopeptidase From Porcine Muscle Length = | 0.0 | ||
| 2bkl_A | 695 | Structural And Mechanistic Analysis Of Two Prolyl E | 1e-111 | ||
| 1yr2_A | 741 | Structural And Mechanistic Analysis Of Two Prolyl E | 1e-103 | ||
| 3iun_A | 693 | Appep_d622n Opened State Length = 693 | 1e-101 | ||
| 3mun_A | 693 | Appep_pepclose Closed State Length = 693 | 1e-100 | ||
| 3ivm_A | 693 | Appep_wt+pp Closed State Length = 693 | 1e-100 | ||
| 3iuj_A | 693 | Appep_wt2 Opened State Length = 693 | 1e-99 | ||
| 4hvt_A | 711 | Structure Of A Post-Proline Cleaving Enzyme From Ri | 1e-50 | ||
| 2xe4_A | 751 | Structure Of Oligopeptidase B From Leishmania Major | 6e-45 |
| >pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552 Length = 709 | Back alignment and structure |
|
| >pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently Bound Inhibitor Z-Pro-Prolinal Length = 710 | Back alignment and structure |
|
| >pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant, Complexed With Inhibitor Length = 710 | Back alignment and structure |
|
| >pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant With Bound Peptide Ligand Suc-Gly-Pro Length = 710 | Back alignment and structure |
|
| >pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant With Bound Peptide Ligand Suc-Gly-Pro Length = 710 | Back alignment and structure |
|
| >pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t Mutant Length = 710 | Back alignment and structure |
|
| >pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle Length = 710 | Back alignment and structure |
|
| >pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 695 | Back alignment and structure |
|
| >pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 741 | Back alignment and structure |
|
| >pdb|3IUN|A Chain A, Appep_d622n Opened State Length = 693 | Back alignment and structure |
|
| >pdb|3MUN|A Chain A, Appep_pepclose Closed State Length = 693 | Back alignment and structure |
|
| >pdb|3IVM|A Chain A, Appep_wt+pp Closed State Length = 693 | Back alignment and structure |
|
| >pdb|3IUJ|A Chain A, Appep_wt2 Opened State Length = 693 | Back alignment and structure |
|
| >pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From Rickettsia Typhi Length = 711 | Back alignment and structure |
|
| >pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major Length = 751 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 789 | |||
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 0.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 1e-66 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 0.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 1e-59 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 0.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 4e-64 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 0.0 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 3e-62 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 0.0 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 5e-41 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 3e-24 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 5e-20 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 9e-12 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 2e-11 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 3e-11 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 4e-11 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 8e-11 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 1e-10 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 3e-10 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 5e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-05 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 2e-07 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 2e-06 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 6e-06 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 8e-05 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 8e-04 |
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Length = 710 | Back alignment and structure |
|---|
Score = 772 bits (1996), Expect = 0.0
Identities = 301/555 (54%), Positives = 392/555 (70%), Gaps = 19/555 (3%)
Query: 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD 295
KFS +AWTHD KG FY+ YP D GTET +NL+ + YYH LGT QSEDILC +
Sbjct: 172 KFSCMAWTHDGKGMFYNAYPQQDGKSD---GTETSTNLHQKLYYHVLGTDQSEDILCAEF 228
Query: 296 PEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL 355
P+ PK++ +++DG+Y+++ I E CDPVN+++YCDL G+ G L +VKL
Sbjct: 229 PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI------LKWVKL 282
Query: 356 IDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESAT 413
ID F+ +Y+ + N+ TVFTF TN+ +P Y++I +D +P W ++PE E+DVLE
Sbjct: 283 IDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVA 342
Query: 414 AVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFL 473
V N +++ YL DVK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL
Sbjct: 343 CVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFL 402
Query: 474 IPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIK 533
PGI+Y C+L E E ++FRE + G D S++ Q+F PSKDG TKIPMFIV KK IK
Sbjct: 403 SPGIIYHCDLTKEELEPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIK 461
Query: 534 LDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 593
LDGSHP LYGYGGFNIS+TP++SVSR I +RH+G V +ANIRGGGEYGE WHKGG LA
Sbjct: 462 LDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILA 521
Query: 594 KKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653
KQNCFDDF A+EYLI GYT ++L I GGSNGGLLV C NQRPDLFGC +A VGVM
Sbjct: 522 NKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVM 581
Query: 654 DMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLT 713
DML++HK+TIGHAW +D+GCS+ ++ F WLIKYSPLHNV+ P + YPS LLLT
Sbjct: 582 DMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDIQ----YPSMLLLT 637
Query: 714 ADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAA 773
ADHDDRVVPLHSLK +AT+QY++ + Q NP++ ++ KAGHG G PT K+I+E +
Sbjct: 638 ADHDDRVVPLHSLKFIATLQYIVGR---SRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVS 694
Query: 774 DRYGFMAKMLGASWV 788
D + F+A+ L W+
Sbjct: 695 DMFAFIARCLNIDWI 709
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Length = 710 | Back alignment and structure |
|---|
Score = 233 bits (598), Expect = 1e-66
Identities = 92/171 (53%), Positives = 119/171 (69%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCF 180
GT AL + SED +Y AY LS SGSDW TIK M+++ D L V F
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKF 173
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} Length = 741 | Back alignment and structure |
|---|
Score = 712 bits (1840), Expect = 0.0
Identities = 220/553 (39%), Positives = 289/553 (52%), Gaps = 42/553 (7%)
Query: 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD 295
KFS +AW + YSR+ PKEG N + H LGT QS D +
Sbjct: 210 KFSGLAWLGND-ALLYSRFAEPKEG-----QAFQALNYNQTVWLHRLGTPQSADQPVFAT 263
Query: 296 PEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL 355
PE PK V+ DG+++V+ E DPVN V+ ++ G P L
Sbjct: 264 PELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG-----------PVTAL 312
Query: 356 IDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAV 415
I AQ++ + F++ AP KI+RVDL F+ + +D LES
Sbjct: 313 IPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA 372
Query: 416 NLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI-EIGSVNAISARREDSVVFISFTSFLI 474
N++ SY+ D K + DL G + + IGS + +S R D ++SF+SF
Sbjct: 373 G-NRLFASYIHDAKSQVLAFDLD-GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQ 430
Query: 475 PGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKL 534
P V + T + + + FD ++F V QVF PSKDG TK+PMFIV +K+
Sbjct: 431 PATVLALDPAT--AKTTPWEPVHL-TFDPADFRVEQVFYPSKDG-TKVPMFIVRRKD--A 484
Query: 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 594
G P LLYGYGGFN+++TP FS + G F +AN+RGGGEYG+ WH G K
Sbjct: 485 KGPLPTLLYGYGGFNVALTPWFSAGFMTWIDS-GGAFALANLRGGGEYGDAWHDAGRRDK 543
Query: 595 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 654
KQN FDDFI+A E+LI+ G T L IEGGSNGGLL+GA NQRPDLF A VGVMD
Sbjct: 544 KQNVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMD 603
Query: 655 MLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTA 714
MLR+ +FT G WV D+G E+E ++ L +YSP HNVR YP+ L+ TA
Sbjct: 604 MLRFDQFTAGRYWVDDYGYPEKEADWRVLRRYSPYHNVR--------SGVDYPAILVTTA 655
Query: 715 DHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAAD 774
D DDRVVP HS K A +Q + P + RIE +AGHG G P K I+E AD
Sbjct: 656 DTDDRVVPGHSFKYTAALQ-------TAAIGPKPHLIRIETRAGHGSGKPIDKQIEETAD 708
Query: 775 RYGFMAKMLGASW 787
F+A G +
Sbjct: 709 VQAFLAHFTGLTP 721
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} Length = 741 | Back alignment and structure |
|---|
Score = 214 bits (548), Expect = 1e-59
Identities = 67/185 (36%), Positives = 97/185 (52%), Gaps = 6/185 (3%)
Query: 1 MASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDP--DAEEVKDFVQKQVELTD 58
+A + YP + + +V+D+ G K+ DP+RWLE +V +VQ Q T
Sbjct: 28 LAKDQAMPSLPPYPASPQVP-LVEDHFGEKVSDPWRWLEADVRTDAKVAAWVQAQSAYTA 86
Query: 59 SVLKNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQD---SLDA 115
+ LK R L +++ L D R+ P +RG FY N+GL QS L V+ +
Sbjct: 87 AYLKQLPERAALEKRMKALIDYERFGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGT 146
Query: 116 KAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL 175
K +VLLDPNT + DG AL + S+D + LAY++ GSDW T+K + + D AD L
Sbjct: 147 KGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL 206
Query: 176 SWVCF 180
WV F
Sbjct: 207 KWVKF 211
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Length = 695 | Back alignment and structure |
|---|
Score = 700 bits (1808), Expect = 0.0
Identities = 192/557 (34%), Positives = 294/557 (52%), Gaps = 47/557 (8%)
Query: 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD 295
K+++ WT DSKGF+Y P + Y YH LGT+ S+D + +
Sbjct: 169 KYATPKWTPDSKGFYYEWLPTDPSI------KVDERPGYTTIRYHTLGTEPSKDTVVHER 222
Query: 296 PEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL 355
P ++ DG+YL + I N VY+ F L
Sbjct: 223 TGDPTTFLQSDLSRDGKYLFVYILRGWSE-NDVYWKRPGEKD--------------FRLL 267
Query: 356 IDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESAT 413
+ G A+YEV A D F LT++ AP+ ++ VD +P W E++PE L S +
Sbjct: 268 VKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVS 326
Query: 414 AVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI-EIGSVNAISARREDSVVFISFTSF 472
V + + YL D +++ LK G + + + +G+ + + + + FTSF
Sbjct: 327 IVG-GHLSLEYLKDATSEVRVATLK-GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSF 384
Query: 473 LIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNI 532
P +Y+ ++ T + +++ + +P + ++ V QVF SKDG TK+PMF+V +K++
Sbjct: 385 TTPRQIYKTSVST--GKSELWAKVDVP-MNPEQYQVEQVFYASKDG-TKVPMFVVHRKDL 440
Query: 533 KLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 592
K DG+ P LLYGYGGFN+++ +F S + G V+ +AN+RGGGEYG+ WH G L
Sbjct: 441 KRDGNAPTLLYGYGGFNVNMEANFRSSILPWL-DAGGVYAVANLRGGGEYGKAWHDAGRL 499
Query: 593 AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652
KKQN FDDF +A+EYL+ YTQ ++L I GGSNGGLLVGA + QRP+L+G + V +
Sbjct: 500 DKKQNVFDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPL 559
Query: 653 MDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLL 712
+DM+RYH F G W+ ++G +E+ E+F L YSP H+VR +YP+ L++
Sbjct: 560 LDMVRYHLFGSGRTWIPEYGTAEKPEDFKTLHAYSPYHHVR--------PDVRYPALLMM 611
Query: 713 TADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEA 772
ADHDDRV P+H+ K +A +Q + + RIE AGHG K I+ +
Sbjct: 612 AADHDDRVDPMHARKFVAAVQ-------NSPGNPATALLRIEANAGHGGADQVAKAIESS 664
Query: 773 ADRYGFMAKMLGASWVE 789
D Y F+ ++L +
Sbjct: 665 VDLYSFLFQVLDVQGAQ 681
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} Length = 695 | Back alignment and structure |
|---|
Score = 226 bits (579), Expect = 4e-64
Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 2/171 (1%)
Query: 11 LQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKL 70
+ YP R ++ VVD HGV++ DPYRWLED A EV+ ++ Q L R+ L
Sbjct: 1 MSYPATRAEQ-VVDTLHGVQVADPYRWLEDEKAPEVQTWMTAQNAHAREALAKFPGREAL 59
Query: 71 REKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDG 130
+ +LF + P +R ++FY + +++LY + + KVLLDPN S DG
Sbjct: 60 AARFKELFYTDSVSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDG 119
Query: 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED-QIVEADALSWVCF 180
T +L +VS D K +A+A + +D A + ++ ++ + + D + +
Sbjct: 120 TVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKY 170
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* Length = 693 | Back alignment and structure |
|---|
Score = 692 bits (1788), Expect = 0.0
Identities = 207/557 (37%), Positives = 302/557 (54%), Gaps = 47/557 (8%)
Query: 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD 295
KFS I+W + +GFFYS Y P + H+ Y+H LGT Q +D L +
Sbjct: 176 KFSGISWLGN-EGFFYSSYDKPDGS------ELSARTDQHKVYFHRLGTAQEDDRLVFGA 228
Query: 296 -PEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK 354
P VTED ++L++ + N++Y DLS P +
Sbjct: 229 IPAQHHRYVGATVTEDDRFLLISAANSTSG-NRLYVKDLS------------QENAPLLT 275
Query: 355 LIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESA 412
+ DA ++ N + LTN+DAP +++ VD P W ++IPE ++ + +
Sbjct: 276 VQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHS 335
Query: 413 TAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSF 472
+ + Y+ D ++ D + + +GSV+ + + +D ++ F ++
Sbjct: 336 GS---GYLFAEYMVDATARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENY 392
Query: 473 LIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNI 532
P +Y+ K+ + ++R + P F ++ Q F SKDG T++P+ I +K +
Sbjct: 393 AQPPTLYRFEPKS--GAISLYRASAAP-FKPEDYVSEQRFYQSKDG-TRVPLIISYRKGL 448
Query: 533 KLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 592
KLDGS+P +LYGYGGF++S+TPSFSVS + LG V+ +AN+RGGGEYG+ WH G
Sbjct: 449 KLDGSNPTILYGYGGFDVSLTPSFSVSVANWL-DLGGVYAVANLRGGGEYGQAWHLAGTQ 507
Query: 593 AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652
KQN FDDFI+A+EYL + GYT++ +L I GGSNGGLLVGA + QRPDL AL VGV
Sbjct: 508 QNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGV 567
Query: 653 MDMLRYHKFTIGHAWVSDFGCSEEEEEFY-WLIKYSPLHNVRRPWEQNPDKPFQYPSTLL 711
+DMLRYH FT G W D+G S + E + +L YSPLHNVR YPST++
Sbjct: 568 LDMLRYHTFTAGTGWAYDYGTSADSEAMFDYLKGYSPLHNVR--------PGVSYPSTMV 619
Query: 712 LTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDE 771
TADHDDRVVP HS K AT+Q ++ +P + RIE AGHG G P K+I++
Sbjct: 620 TTADHDDRVVPAHSFKFAATLQ-------ADNAGPHPQLIRIETNAGHGAGTPVAKLIEQ 672
Query: 772 AADRYGFMAKMLGASWV 788
+AD Y F +G +
Sbjct: 673 SADIYAFTLYEMGYREL 689
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* Length = 693 | Back alignment and structure |
|---|
Score = 221 bits (566), Expect = 3e-62
Identities = 73/179 (40%), Positives = 100/179 (55%), Gaps = 2/179 (1%)
Query: 2 ASLSGIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVL 61
S L YPV R+ E VD Y G + DPYRWLED + E + +V+ Q +T L
Sbjct: 1 GSHMSGKARLHYPVTRQGE-QVDHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYL 59
Query: 62 KNCDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLL 121
R ++EK+ ++ + APF+ G +++F N GLQ Q+VL+ Q A+V L
Sbjct: 60 AQIPYRAAIKEKLAASWNYAKEGAPFREGRYHYFFKNDGLQNQNVLWRQQE-GKPAEVFL 118
Query: 122 DPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCF 180
DPNTLS DGT AL ++S S D + LAY+LS +GSDW I LM +E + L V F
Sbjct: 119 DPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKF 177
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} Length = 751 | Back alignment and structure |
|---|
Score = 603 bits (1556), Expect = 0.0
Identities = 140/568 (24%), Positives = 241/568 (42%), Gaps = 62/568 (10%)
Query: 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDP 296
I W D FY ++ + H +G QSED+ +++
Sbjct: 223 NGEIVWGPDHTSLFYVTKDET--------------LRENKVWRHVMGKLQSEDVCLYEEH 268
Query: 297 EHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI 356
+ D L I +V+ DL + + P K
Sbjct: 269 NPLFSA-FMYKAADTNTLC--IGSQSPETAEVHLLDLRK-GNAHNTLEI---VRPREK-- 319
Query: 357 DGFDAQYEVIANDDTVFTFLTNKD-APKYKIIRVDLKEPNDWFEVIPEAERDVLESATAV 415
+Y+V + + LTN+ A +K++ +P+DW V+ + DV + AV
Sbjct: 320 ---GVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV 376
Query: 416 NLNQMIVSYLSDVKYVLQIRDLKN-------GSLLHQLPIE-----IGSVNAISARREDS 463
N ++V+ + + G+ L ++ +E + V + E+
Sbjct: 377 RSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEP 436
Query: 464 VVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIP 523
+ ++S P + + + + RE + GFD + + V + F + D TKIP
Sbjct: 437 TFRMEYSSLATPNTWFDVSPQDHSRTAVKVRE-VGGGFDAANYKVERRFATAPDQ-TKIP 494
Query: 524 MFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 583
+ +V K++ + PC+LYGYG + +S+ P FS+ G +F IA+IRGG E G
Sbjct: 495 LSVVYHKDLDMSQPQPCMLYGYGSYGLSMDPQFSIQHLPYCDR-GMIFAIAHIRGGSELG 553
Query: 584 EEWHKGGA-LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDL 642
W++ GA K+N F DFI+A+E+L++A T +L EG S GGLL+GA +N RPDL
Sbjct: 554 RAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDL 613
Query: 643 FGCALAHV---GVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQN 699
F ALA V VM + + ++G E + + +++ YSP+ NV
Sbjct: 614 FKVALAGVPFVDVMTTMCDPSIPLTTGEWEEWGNPNEYKYYDYMLSYSPMDNV------- 666
Query: 700 PDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGH 759
+ +YP+ ++ HD RV K ++ ++ E N I+ I+ ++GH
Sbjct: 667 --RAQEYPNIMVQCGLHDPRVAYWEPAKWVSKLR-------ECKTDNNEILLNIDMESGH 717
Query: 760 GVGLPTQKMIDEAADRYGFMAKMLGASW 787
K E+A + F+ K L ++
Sbjct: 718 FSAKDRYKFWKESAIQQAFVCKHLKSTV 745
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} Length = 751 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 5e-41
Identities = 39/202 (19%), Positives = 76/202 (37%), Gaps = 24/202 (11%)
Query: 1 MASLSGIDESLQYPVARR-------------DESVVDDYHGVKIVDPYRWLEDPDAE--E 45
M+S S + S Q P+A + D DPY W+ D D +
Sbjct: 21 MSSDSSVAASAQPPIAAKKPHRVTLGYVEGEDRGPNPMNPPRYREDPYFWMRDDDRKDPA 80
Query: 46 VKDFVQKQVELTDSVLKN-CDVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQ 104
V + + K+ + + +RD + + + AP+ G +Y +P
Sbjct: 81 VIEHLNKEKVYFQARSADIAQLRDDIYAEHISHINEDDMSAPYVYGKYRYYTREVKGKPY 140
Query: 105 SVLYVQ-----DSLDAKAKVLLDPNTLSDDGTA-ALIKVS-VSEDAKYLAYALSYSGSDW 157
+ A +V++D N +++ +++V + +A+++ SG++
Sbjct: 141 KIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEV 200
Query: 158 ATIKLMRIEDQ-IVEADALSWV 178
TI+ RI D AD +S
Sbjct: 201 YTIEFKRISDPSQTIADKVSGT 222
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 3e-24
Identities = 65/352 (18%), Positives = 102/352 (28%), Gaps = 44/352 (12%)
Query: 399 EVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISA 458
E A N +I VL I D ++G L+ A
Sbjct: 285 EEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGELV-DAAGPWTEWAATLT 343
Query: 459 RREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVF-VPSKD 517
V ++ + +V L T T + D + + Q+ + D
Sbjct: 344 VSGTRAVGVAASPRTAYEVVE---LDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPD 400
Query: 518 GSTKIPMFIVSKKNIKLDGS----HPCLLYGYGGFNISVTPSFS------VSRTILMRHL 567
G I I + G P ++ +GG V SR
Sbjct: 401 GRE-IHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSR------- 452
Query: 568 G-AVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGS 626
G V + N G YG + + +D + + L G +L + GGS
Sbjct: 453 GIGVADV-NYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGS 511
Query: 627 NGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDF-----GCSEEEEEFY 681
GG + + D++ C V+D+L + H + S + G EE E Y
Sbjct: 512 AGGWTAASSLVS-TDVYACGTVLYPVLDLLGWAD-GGTHDFESRYLDFLIGSFEEFPERY 569
Query: 682 WLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQ 733
+PL P LLL D P + L +
Sbjct: 570 R--DRAPLTRA-----DRVRVP-----FLLLQGLEDPVCPPEQCDRFLEAVA 609
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582 | Back alignment and structure |
|---|
Score = 93.7 bits (233), Expect = 5e-20
Identities = 69/391 (17%), Positives = 131/391 (33%), Gaps = 47/391 (12%)
Query: 353 VKLIDGFDAQYE--VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLE 410
+++ D + + I+ V L + ++ VD ++ + +P +
Sbjct: 187 LRVFDSGEGSFSSASISPGMKVTAGLETAREAR--LVTVDPRDGSVEDLELPSKDFSSYR 244
Query: 411 SATAVNLNQMIVSYLSD-VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISF 469
L YL D V+ R+ ++ + +E N + S
Sbjct: 245 PTAITWL-----GYLPDGRLAVVARREGRSAVFIDGERVEAPQGNHGRVVLWRGKLVTSH 299
Query: 470 TSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEF-HVHQVFVPSKDGSTKIPMFIVS 528
TS P + L + P E +P R V+V S DG +++P +++
Sbjct: 300 TSLSTPPRIVS--LPSGEP----LLEGGLPEDLRRSIAGSRLVWVESFDG-SRVPTYVLE 352
Query: 529 KKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLG-AVFCIANIRGGGEYGEEWH 587
P ++ +GG + S+ + + G V N RG YGEEW
Sbjct: 353 SGRA--PTPGPTVVLVHGGPFAEDSDSWD-TFAASLAAAGFHVVMP-NYRGSTGYGEEWR 408
Query: 588 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCAL 647
+D +A+ + +G +L I G S GG + + +P LF +
Sbjct: 409 LKIIGDPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGV 466
Query: 648 AHVGVMDMLRYHKFTIGHAWVSDFGCSE--EEEEFYWLIKYSPLH---NVRRPWEQNPDK 702
A V+D ++ + A +F E SP++ ++ P
Sbjct: 467 AGASVVDWEEMYELS--DAAFRNFIEQLTGGSREIMR--SRSPINHVDRIKEP------- 515
Query: 703 PFQYPSTLLLTADHDDRVVPLHSLKLLATMQ 733
L+ + R L+L+ +
Sbjct: 516 ------LALIHPQNASRTPLKPLLRLMGELL 540
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* Length = 318 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 9e-12
Identities = 34/249 (13%), Positives = 65/249 (26%), Gaps = 50/249 (20%)
Query: 501 FDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLY--GYGGFNISVTPSFSV 558
+ V+++ S +I + +G HP ++ GY + +
Sbjct: 49 YPADGVKVYRLTYKSFGN-ARITGWYAVPDK---EGPHPAIVKYHGYNA-----SYDGEI 99
Query: 559 SRTILMRHLG-AVFCIANIRGGGEYGEEWHKGGALAKKQ--------------NCFDDFI 603
+ G A F + +RG + A + D +
Sbjct: 100 HEMVNWALHGYATFGM-LVRGQQRSEDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAV 158
Query: 604 SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT- 662
A E + S ++ + GGS GG L A + + + R
Sbjct: 159 RALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAAVADYPYLSNFERAIDVAL 218
Query: 663 ------IGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRR---PWEQNPDKPFQYPSTLLLT 713
I + + E + L + ++ R P L+
Sbjct: 219 EQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRVKVP-------------VLMSI 265
Query: 714 ADHDDRVVP 722
D P
Sbjct: 266 GLIDKVTPP 274
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Length = 740 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 39/229 (17%), Positives = 66/229 (28%), Gaps = 33/229 (14%)
Query: 512 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG-FNISVTPSFSVS-RTILMRHLG- 568
TK ++ + +P LL Y G + F ++ T L
Sbjct: 476 LDFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENI 535
Query: 569 AVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNG 628
V RG G G++ +D I A+ G+ ++++ I G S G
Sbjct: 536 IVASFDG-RGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYG 594
Query: 629 GLLVGACINQRPDLFGCALAHVGVMDML--------RYHKFTIGHAWVSDFGCSEEEEEF 680
G + + +F C +A V RY G E+
Sbjct: 595 GYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYM------------GLPTPEDNL 642
Query: 681 YWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLL 729
+ + E + LL+ DD V S ++
Sbjct: 643 DHYRNSTVMSRA----ENFKQVEY-----LLIHGTADDNVHFQQSAQIS 682
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} Length = 346 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 3e-11
Identities = 39/260 (15%), Positives = 68/260 (26%), Gaps = 55/260 (21%)
Query: 501 FDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLY--GYGGFNISVTPSFSV 558
F S + ++ G +I + K +G HP L+ GY S
Sbjct: 75 FQVSFAECYDLYFTGVRG-ARIHAKYIKPKT---EGKHPALIRFHGYSS------NSGDW 124
Query: 559 SRTILMRHLG-AVFCIANIRGGGEYGEEWHKG-----------GALAKKQN-----CFDD 601
+ + G V + ++RG G ++ G N F D
Sbjct: 125 NDKLNYVAAGFTVVAM-DVRGQGGQSQDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLD 183
Query: 602 FISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKF 661
+ +++ ++ + G S GG L AC P + + + D R
Sbjct: 184 TAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPRVRKVVSEYPFLSDYKRVWDL 243
Query: 662 TIGHAWVSDFG---------CSEEEEEFYWLIKYSPLHNVRR---PWEQNPDKPFQYPST 709
+ + E E F L + +R
Sbjct: 244 DLAKNAYQEITDYFRLFDPRHERENEVFTKLGYIDVKNLAKRIKGD-------------V 290
Query: 710 LLLTADHDDRVVPLHSLKLL 729
L+ D P
Sbjct: 291 LMCVGLMDQVCPPSTVFAAY 310
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 4e-11
Identities = 45/230 (19%), Positives = 80/230 (34%), Gaps = 38/230 (16%)
Query: 513 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI-SVTPSFSVSRTILMRHL---G 568
+ + DG T + + + +P ++Y YGG + VT ++ S ++ G
Sbjct: 460 IMAADGQTPLYYKLTMPLHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKG 519
Query: 569 -AVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSN 627
AVF + + RG G + + Q D + ++L S + + ++ + G S
Sbjct: 520 YAVFTVDS-RGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSY 578
Query: 628 GGLLVGACINQRPDLFGCALAHVGVMDML--------RYHKFTIGHAWVSDFGCSEEEEE 679
GG + + D+F +A V+D RY +E E
Sbjct: 579 GGFMTTNLMLTHGDVFKVGVAGGPVIDWNRYAIMYGERYF------------DAPQENPE 626
Query: 680 FYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLL 729
Y + L + +L+ D VV HSL L
Sbjct: 627 GY--DAANLLKRA-----GDLKGRL-----MLIHGAIDPVVVWQHSLLFL 664
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 8e-11
Identities = 39/229 (17%), Positives = 72/229 (31%), Gaps = 33/229 (14%)
Query: 512 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI-SVTPSFSVS-RTILMRHLG- 568
+ + ++ +P L+ YGG SV F+V+ + L G
Sbjct: 470 IKKLEVDEITLWYKMILPPQFDRSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGM 529
Query: 569 AVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNG 628
+ + RG G++ +D I+A I G+ +++ I G S G
Sbjct: 530 VIALVDG-RGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYG 588
Query: 629 GLLVGACINQRPDLFGCALAHVGVMDML--------RYHKFTIGHAWVSDFGCSEEEEEF 680
G + + LF C +A V R+ ++ E
Sbjct: 589 GYVSSLALASGTGLFKCGIAVAPVSSWEYYASVYTERFMGLPTK----------DDNLEH 638
Query: 681 YWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLL 729
Y + + E + + LL+ DD V +S ++
Sbjct: 639 Y--KNSTVMARA----EYFRNVDY-----LLIHGTADDNVHFQNSAQIA 676
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} Length = 290 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 1e-10
Identities = 37/252 (14%), Positives = 70/252 (27%), Gaps = 38/252 (15%)
Query: 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLG-AVFCIANIRGGGEYGEEWHKGGALAKKQ 596
P +L+ +G + S+ R LG ++RG Y
Sbjct: 28 MPGVLFVHGW---GGSQHHSLVRAREAVGLGCICMTF-DLRGHEGYASMRQSVTR----A 79
Query: 597 NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML 656
DD +A + L S Y + + + G S GG L +RP + + D
Sbjct: 80 QNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERPVEWLALRSPALYKDAH 139
Query: 657 RYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADH 716
+ +D + L + ++ LL+ A++
Sbjct: 140 WDQPKV---SLNADPDLMDYRRRALAPGDNLALAACAQ---------YKGD-VLLVEAEN 186
Query: 717 DDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT--QKMIDEAAD 774
D V + R+ A H + + Q+ D
Sbjct: 187 DVIVPHPVMRNYADAF-----------TNARSLTSRVIAGADHALSVKEHQQEYTRALID 235
Query: 775 RYGFMAKMLGAS 786
++ +M+
Sbjct: 236 ---WLTEMVVGR 244
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 3e-10
Identities = 43/231 (18%), Positives = 78/231 (33%), Gaps = 39/231 (16%)
Query: 513 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI-SVTPSFSVSRTIL----MRHL 567
+ + DG T + ++ +P +Y YGG +VT S+ L +
Sbjct: 492 LTAADGKTPLNYSVIKPAGFDPAKRYPVAVYVYGGPASQTVTDSWPGRGDHLFNQYLAQQ 551
Query: 568 G-AVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGS 626
G VF + N RG G ++ + D + +L + ++ ++G S
Sbjct: 552 GYVVFSLDN-RGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWS 610
Query: 627 NGGLLVGACINQRPDLFGCALAHVGVMDML--------RYHKFTIGHAWVSDFGCSEEEE 678
NGG + + + D + C +A V D RY +
Sbjct: 611 NGGYMTLMLLAKASDSYACGVAGAPVTDWGLYDSHYTERYM------------DLPARND 658
Query: 679 EFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLL 729
Y + L ++ + P LL+ DD V+ +S L+
Sbjct: 659 AGY--REARVLTHI-----EGLRSPL-----LLIHGMADDNVLFTNSTSLM 697
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 5e-09
Identities = 41/233 (17%), Positives = 72/233 (30%), Gaps = 39/233 (16%)
Query: 512 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG-FNISVTPSFSVS-RTILMRHLG- 568
+ + +PM I+ +P LL G + SV F VS T+++ G
Sbjct: 470 YRDIEIDDYNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGA 529
Query: 569 AVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNG 628
V RG G G + D + A ++ Y ++ + G G
Sbjct: 530 VVVKCDG-RGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYG 588
Query: 629 GLLVGACINQRPD----LFGCALAHVGVMDML--------RYHKFTIGHAWVSDFGCSEE 676
G L + + + F C A + D RY G
Sbjct: 589 GYLSTYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYL------------GLHGL 636
Query: 677 EEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLL 729
+ Y H V ++ F L++ D+++ H+ +L+
Sbjct: 637 DNRAY--EMTKVAHRV----SALEEQQF-----LIIHPTADEKIHFQHTAELI 678
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 1e-07
Identities = 63/445 (14%), Positives = 131/445 (29%), Gaps = 103/445 (23%)
Query: 17 RRDESVVDD----YHGVKIVDPYRWLEDPDA------EEVKDFVQKQVELTDSVLKNC-- 64
E+V++ + +I + D + ++ +++ L +NC
Sbjct: 193 NSPETVLEMLQKLLY--QIDPNWTSRSDHSSNIKLRIHSIQAELRRL--LKSKPYENCLL 248
Query: 65 ---DVRDKLREKITKLFD-------SPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLD 114
+V++ K F+ + R+ + H + L +
Sbjct: 249 VLLNVQNA---KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 115 AKAKVL-LDPNTLSDDGTA------ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED 167
K L P L + ++I S+ + W + ++
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN--------WKHVNCDKLT- 356
Query: 168 QIVEA--DALSWVCFCFSHSFGYFFHLTI--SLLNVPTYKLFLY--------LRGIFFFF 215
I+E+ + L + F L++ ++PT L L + +
Sbjct: 357 TIIESSLNVLE-----PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 216 YLFSLV----KSTIYSFWSV--VSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTET 269
+ +SLV K + S S+ + K + H S Y PK D
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS---IVDHYNIPKTFDSDDLIPPY 468
Query: 270 DSN-LYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKV 328
Y +H + E + D ++L I + N
Sbjct: 469 LDQYFYSHIGHHLKNIEHPE-----RMTLFRMVFL------DFRFLEQKIRHDSTAWNAS 517
Query: 329 YYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKD-----APK 383
++ L+ K + I D +YE + N + FL + +
Sbjct: 518 -----GSILNTLQQLKF------YKPYICDNDPKYERLVNA--ILDFLPKIEENLICSKY 564
Query: 384 YKIIRVDLKEPNDWFEVIPEAERDV 408
++R+ L ++ + EA + V
Sbjct: 565 TDLLRIALMAEDE--AIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 5e-07
Identities = 79/571 (13%), Positives = 162/571 (28%), Gaps = 163/571 (28%)
Query: 274 YHEFYYHFLGTKQSEDILCWKD------------------PEHPKYIFSGHVTEDGQYLV 315
+H ++H + + E +KD + PK I S +
Sbjct: 1 HH--HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH----- 53
Query: 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTF 375
I + D V+ + L + E +K FV+ + Y+ F
Sbjct: 54 --IIMSKDAVSGTLRLFWTLLSKQEEMVQK------FVE--EVLRINYK----------F 93
Query: 376 LTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSY-LSDVKYVLQI 434
L + I+ + ++P+ + +RD L N NQ+ Y +S ++ L++
Sbjct: 94 LMSP-------IKTEQRQPSMMTRMY-IEQRDRLY-----NDNQVFAKYNVSRLQPYLKL 140
Query: 435 RD----LKNGS--LLHQLPIEIG---SVNAISARREDSVVFISFTSFLIPGIVY-----Q 480
R L+ L+ + G + A+ V ++
Sbjct: 141 RQALLELRPAKNVLIDGVL---GSGKTWVALDVCLSYKVQ----CKM--DFKIFWLNLKN 191
Query: 481 CNLKTETPEM-KIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHP 539
CN EM + I P + H + + ++ + SK +
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-------YE 244
Query: 540 -CLL-----YGYGGFNISVTPSFSVSRTILM--RHLGAVFCIANIRGGGEYGEEWHKG-- 589
CLL N +F++S IL+ R ++ +
Sbjct: 245 NCLLVLLNVQ-----NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 590 -----GALAKKQNC-FDDF----ISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR 639
L K +C D ++ + +S ++ I
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-------------------IIAESIRDG 340
Query: 640 PDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRP---- 695
+ HV + + ++ + E + + + P + P
Sbjct: 341 LATWD-NWKHVNCDKLTTIIESSL------NVLEPAEYRKMFDRLSVFP-PSAHIPTILL 392
Query: 696 ---W-EQNPDKPFQYPSTL----LLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTN 747
W + + L L+ + + + S+ L L LEN +
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE------LKVKLENEYALH 446
Query: 748 PIIGRIERKAGHGVGLPTQKMIDEAADRYGF 778
I ++ + +I D+Y +
Sbjct: 447 RSI--VDHYNIP-KTFDSDDLIPPYLDQYFY 474
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 4e-05
Identities = 61/505 (12%), Positives = 140/505 (27%), Gaps = 148/505 (29%)
Query: 25 DYHGVKIVDPYR--WLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKLREK-----ITKL 77
Y I+ + ++++ D ++V+D + S+L ++ + K +L
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPK-------SILSKEEIDHIIMSKDAVSGTLRL 67
Query: 78 FDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKV 137
F + K+ F V++ L K L+ P + + ++
Sbjct: 68 FWTLLS----KQEEMVQKF------------VEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 138 SVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLL 197
+ + + L +A + R++ + L +LL
Sbjct: 112 YIEQRDR-----LYNDNQVFAKYNVSRLQP---------------------YLKLRQALL 145
Query: 198 NV-PTYKLFLY-LRGIFFFFYLF---SLVKSTIYSFWSVVSQFKFSSIAW-------THD 245
+ P + + + G + S+ V + F I W + +
Sbjct: 146 ELRPAKNVLIDGVLG-------SGKTWVALDVCLSY-KVQCKMDFK-IFWLNLKNCNSPE 196
Query: 246 S-----KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED---IL--CWKD 295
+ + Y P D + + + L +K E+ +L +
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-N 255
Query: 296 PEHPKYIFSGH-----VTED---------GQYLVMCIEENCDPVN---------KVYYCD 332
+ F+ T + ++ + + K C
Sbjct: 256 AKAWNA-FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 333 LSALPE----------GLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAP 382
LP + RDGL D + + + L +
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGL----ATWDNWK-HVNCDKLTTIIESSLNVLEPA 369
Query: 383 KYK-------IIRVDLKEPND-----WFEVIPEAERDVLE-----SATAVNLNQMIVSYL 425
+Y+ + P WF+VI V+ S + +S
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429
Query: 426 S-DVKYVLQIRDLKNGSLLHQLPIE 449
S ++ +++ + LH+ ++
Sbjct: 430 SIYLELKVKLENEYA---LHRSIVD 451
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* Length = 337 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 2e-07
Identities = 38/253 (15%), Positives = 64/253 (25%), Gaps = 53/253 (20%)
Query: 501 FDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLY--GYGGFNISVTPSFSV 558
+ V G I +++ K + PC++ GY G F
Sbjct: 61 SHLKTVEAYDVTFSGYRGQR-IKGWLLVPKLEE--EKLPCVVQYIGYNG-----GRGFPH 112
Query: 559 SRTILMRHLGAVFCIANIRGGGEYGEE-----------------WHKGGALAKKQ----N 597
F + + RG G + + G L +
Sbjct: 113 DWLFWPSMGYICFVM-DTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRR 171
Query: 598 CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 657
F D + A E S ++ I GGS GG + A + R
Sbjct: 172 VFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKAKALLCDVPFLCHFRR 231
Query: 658 YHKFTIGHAWVSDF----GCSEEEEEFYWLIKY-SPLHNVRR---PWEQNPDKPFQYPST 709
+ H + ++EE + + Y ++ R P
Sbjct: 232 AVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIP-------------A 278
Query: 710 LLLTADHDDRVVP 722
L D+ P
Sbjct: 279 LFSVGLMDNICPP 291
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} Length = 446 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 2e-06
Identities = 44/294 (14%), Positives = 82/294 (27%), Gaps = 43/294 (14%)
Query: 501 FDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSR 560
+R P + G + +F+ G P ++ +G R
Sbjct: 142 HERYFLPPGVRREPVRVGRVRGTLFL-----PPEPGPFPGIVDMFGT-----GGGLLEYR 191
Query: 561 TILMRHLG-AVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRK 619
L+ G AV +A + + F A YL+S +
Sbjct: 192 ASLLAGKGFAVMALAYYNYED-LPKTMETLH--------LEYFEEAMNYLLSHPEVKGPG 242
Query: 620 LCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDM---LRYHKFTIGHAWVSDFGCSEE 676
+ + G S GG L + + + + + V ++ LRY T+ V+
Sbjct: 243 VGLLGISKGGELCLSMASFLKGITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVT 302
Query: 677 EEEFYWLIKY------SPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLA 730
++ + ++ P P E + F L L D
Sbjct: 303 KDGYADIVDVLNSPLEGPDQKSFIPVE-RAESTF-----LFLVGQDDHNWKS-------E 349
Query: 731 TMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784
C L+ + P I + GH + P + + + G
Sbjct: 350 FYANEACKRLQAHGRRKPQIICYP-ETGHYIEPPYFPLCRASLHALVGSPIIWG 402
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} Length = 422 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 6e-06
Identities = 30/261 (11%), Positives = 65/261 (24%), Gaps = 42/261 (16%)
Query: 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 595
G P ++ +G R L+ G +
Sbjct: 156 GPFPGIIDIFGI-----GGGLLEYRASLLAGHGFATLALAYYNFEDLPNNMDNIS----- 205
Query: 596 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCAL---AHVGV 652
+ F A Y++ + + + G S G + + + ++ + +
Sbjct: 206 ---LEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKNVSATVSINGSGISG 262
Query: 653 MDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPST--- 709
+ Y +I + + +S L ++ ++ PS
Sbjct: 263 NTAINYKHSSIPPLG---------YDLRRIKVAFSGLVDIVDIRN-ALVGGYKNPSMIPI 312
Query: 710 ------LLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL 763
+LL DD + L+ + P I GH +
Sbjct: 313 EKAQGPILLIVGQDDHNWR------SELYAQTVSERLQAHGKEKPQI-ICYPGTGHYIEP 365
Query: 764 PTQKMIDEAADRYGFMAKMLG 784
P + + R + G
Sbjct: 366 PYFPLCPASLHRLLNKHVIWG 386
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 Length = 386 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 8e-05
Identities = 39/233 (16%), Positives = 67/233 (28%), Gaps = 27/233 (11%)
Query: 500 GFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVS 559
+ + DG +P+++ + G HP ++ GG + SF +
Sbjct: 119 AAPLLSPPAERHELVV-DGIP-MPVYVRIPEG---PGPHPAVIML-GGLESTKEESFQME 172
Query: 560 RTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRK 619
+L R G + G GE E G + + + L ++
Sbjct: 173 NLVLDR--GMATATFDGPGQGEMFEYKRIAG------DYEKYTSAVVDLLTKLEAIRNDA 224
Query: 620 LCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT--IGHAWVSDFGCSEEE 677
+ + G S GG P L C + G D+ + T +W E
Sbjct: 225 IGVLGRSLGGNYALKSAACEPRLAACI-SWGGFSDLDYWDLETPLTKESWKYVSKVDTLE 283
Query: 678 EEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLA 730
E + +V P T +L D V +L
Sbjct: 284 EARLHVHAALETRDVLS----QIACP-----TYILHGV-HDEVPLSFVDTVLE 326
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A Length = 380 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 8e-04
Identities = 14/87 (16%), Positives = 26/87 (29%)
Query: 575 NIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGA 634
+ + + I L+ ++ I G S GG
Sbjct: 220 QCPPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWT 279
Query: 635 CINQRPDLFGCALAHVGVMDMLRYHKF 661
I + P+LF A+ G D+ + +
Sbjct: 280 AIMEFPELFAAAIPICGGGDVSKVERI 306
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 789 | |||
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 100.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 100.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 100.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 100.0 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 100.0 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 100.0 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 100.0 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 100.0 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 100.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 100.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 100.0 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 99.91 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 99.89 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 99.89 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 99.89 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 99.89 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 99.89 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 99.87 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 99.87 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 99.87 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 99.87 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 99.87 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 99.86 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 99.86 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 99.86 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 99.85 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 99.85 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 99.85 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 99.85 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 99.84 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 99.84 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 99.84 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 99.84 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 99.84 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 99.84 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 99.83 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 99.83 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 99.83 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 99.83 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 99.82 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 99.82 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 99.82 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 99.82 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 99.82 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 99.82 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 99.82 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 99.81 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 99.81 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 99.8 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 99.8 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 99.8 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 99.8 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 99.79 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 99.78 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.78 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 99.78 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 99.78 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 99.78 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 99.77 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 99.77 | |
| 4h0c_A | 210 | Phospholipase/carboxylesterase; PSI-biology, midwe | 99.77 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 99.77 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 99.76 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 99.76 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 99.76 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 99.76 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 99.76 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 99.75 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 99.75 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 99.74 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 99.74 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.74 | |
| 4fhz_A | 285 | Phospholipase/carboxylesterase; alpha/beta hydrola | 99.74 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 99.73 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 99.73 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 99.73 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 99.73 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 99.73 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 99.73 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 99.73 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 99.72 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 99.72 | |
| 1dqz_A | 280 | 85C, protein (antigen 85-C); fibronectin, structur | 99.71 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 99.7 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 99.7 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 99.69 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 99.69 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 99.69 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 99.68 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 99.68 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.67 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 99.67 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.67 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 99.67 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 99.67 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 99.67 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 99.67 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.67 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 99.67 | |
| 4fle_A | 202 | Esterase; structural genomics, PSI-biology, northe | 99.66 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 99.65 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 99.65 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 99.65 | |
| 4f21_A | 246 | Carboxylesterase/phospholipase family protein; str | 99.65 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.64 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 99.63 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.63 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 99.63 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 99.62 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 99.62 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 99.62 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 99.61 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.61 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 99.61 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.6 | |
| 2y6u_A | 398 | Peroxisomal membrane protein LPX1; hydrolase, puta | 99.59 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.58 | |
| 2pl5_A | 366 | Homoserine O-acetyltransferase; alpha/beta hydrola | 99.58 | |
| 2qs9_A | 194 | Retinoblastoma-binding protein 9; B5T overexpresse | 99.57 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 99.57 | |
| 3guu_A | 462 | Lipase A; protein structure, hydrolase; HET: 1PE; | 99.56 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.56 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 99.56 | |
| 3u1t_A | 309 | DMMA haloalkane dehalogenase; alpha/beta-hydrolase | 99.56 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.56 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 99.56 | |
| 1qlw_A | 328 | Esterase; anisotropic refinement, atomic resolutio | 99.56 | |
| 3i1i_A | 377 | Homoserine O-acetyltransferase; structural genomic | 99.56 | |
| 3kxp_A | 314 | Alpha-(N-acetylaminomethylene)succinic acid hydrol | 99.56 | |
| 3oos_A | 278 | Alpha/beta hydrolase family protein; APC67239.0, p | 99.56 | |
| 1uxo_A | 192 | YDEN protein; hydrolase, A/B hydrolase, esterase, | 99.55 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 99.55 | |
| 3dqz_A | 258 | Alpha-hydroxynitrIle lyase-like protein; A/B-hydrl | 99.54 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 99.53 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.53 | |
| 1brt_A | 277 | Bromoperoxidase A2; haloperoxidase, oxidoreductase | 99.53 | |
| 3v48_A | 268 | Aminohydrolase, putative aminoacrylate hydrolase R | 99.53 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 99.52 | |
| 1qe3_A | 489 | PNB esterase, para-nitrobenzyl esterase; alpha-bet | 99.52 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 99.51 | |
| 3fsg_A | 272 | Alpha/beta superfamily hydrolase; PF00561, MCSG, P | 99.51 | |
| 1a8q_A | 274 | Bromoperoxidase A1; haloperoxidase, oxidoreductase | 99.51 | |
| 4dnp_A | 269 | DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu | 99.51 | |
| 3qvm_A | 282 | OLEI00960; structural genomics, PSI-biology, midwe | 99.51 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 99.51 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 99.51 | |
| 3hss_A | 293 | Putative bromoperoxidase; alpha beta hydrolase, ox | 99.51 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 99.51 | |
| 1mtz_A | 293 | Proline iminopeptidase; alpha-beta hydrolase, CAP | 99.5 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.5 | |
| 3om8_A | 266 | Probable hydrolase; structural genomics, PSI-2, pr | 99.49 | |
| 4g9e_A | 279 | AHL-lactonase, alpha/beta hydrolase fold protein; | 99.49 | |
| 2yys_A | 286 | Proline iminopeptidase-related protein; TTHA1809, | 99.49 | |
| 2b61_A | 377 | Homoserine O-acetyltransferase; acyl-enzyme, aspar | 99.49 | |
| 3fob_A | 281 | Bromoperoxidase; structural genomics, IDP00046, ba | 99.49 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 99.49 | |
| 2xua_A | 266 | PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate | 99.48 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 99.47 | |
| 1wm1_A | 317 | Proline iminopeptidase; complex with inhibitor, hy | 99.47 | |
| 3bdv_A | 191 | Uncharacterized protein DUF1234; DUF1234 family pr | 99.47 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.47 | |
| 1j1i_A | 296 | META cleavage compound hydrolase; carbazole degrad | 99.47 | |
| 1ycd_A | 243 | Hypothetical 27.3 kDa protein in AAP1-SMF2 interge | 99.47 | |
| 3g9x_A | 299 | Haloalkane dehalogenase; alpha/beta hydrolase, hel | 99.47 | |
| 1q0r_A | 298 | RDMC, aclacinomycin methylesterase; anthracycline, | 99.46 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 99.46 | |
| 2r11_A | 306 | Carboxylesterase NP; 2632844, putative hydrolase, | 99.46 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 99.46 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.46 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 99.45 | |
| 1c4x_A | 285 | BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di | 99.44 | |
| 2vat_A | 444 | Acetyl-COA--deacetylcephalosporin C acetyltransfer | 99.44 | |
| 1azw_A | 313 | Proline iminopeptidase; aminopeptidase, serine pro | 99.43 | |
| 1hkh_A | 279 | Gamma lactamase; hydrolase, alpha/beta hydrolase, | 99.43 | |
| 4fol_A | 299 | FGH, S-formylglutathione hydrolase; D-type esteras | 99.43 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 99.43 | |
| 3p2m_A | 330 | Possible hydrolase; alpha/beta hydrolase superfami | 99.42 | |
| 2qvb_A | 297 | Haloalkane dehalogenase 3; RV2579, alpha-beta hydr | 99.42 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 99.42 | |
| 3nwo_A | 330 | PIP, proline iminopeptidase; structural genomics, | 99.42 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.42 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.42 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.42 | |
| 3r40_A | 306 | Fluoroacetate dehalogenase; FACD, defluorinase, al | 99.42 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.42 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.42 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.41 | |
| 1mj5_A | 302 | 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; | 99.41 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.41 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.41 | |
| 2xmz_A | 269 | Hydrolase, alpha/beta hydrolase fold family; menaq | 99.4 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 99.4 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.4 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.4 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 99.38 | |
| 2e3j_A | 356 | Epoxide hydrolase EPHB; epoxide hydrolase B, struc | 99.38 | |
| 3pic_A | 375 | CIP2; alpha/beta hydrolase fold, glucuronoyl ester | 99.38 | |
| 3fla_A | 267 | RIFR; alpha-beta hydrolase thioesterase, hydrolase | 99.38 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.38 | |
| 2rau_A | 354 | Putative esterase; NP_343859.1, putative lipase, s | 99.38 | |
| 2q0x_A | 335 | Protein DUF1749, uncharacterized protein; alpha/be | 99.37 | |
| 3kda_A | 301 | CFTR inhibitory factor (CIF); alpha/beta hydrolase | 99.37 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 99.37 | |
| 3bf7_A | 255 | Esterase YBFF; thioesterase, helical CAP, hydrolas | 99.36 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 99.36 | |
| 1wom_A | 271 | RSBQ, sigma factor SIGB regulation protein RSBQ; a | 99.36 | |
| 1ukc_A | 522 | ESTA, esterase; fungi, A/B hydrolase fold, acetylc | 99.36 | |
| 2cjp_A | 328 | Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu | 99.36 | |
| 1isp_A | 181 | Lipase; alpha/beta hydrolase fold, hydrolase; 1.30 | 99.36 | |
| 3bwx_A | 285 | Alpha/beta hydrolase; YP_496220.1, joint center fo | 99.36 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.35 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.35 | |
| 4g4g_A | 433 | 4-O-methyl-glucuronoyl methylesterase; alpha/beta | 99.35 | |
| 2qmq_A | 286 | Protein NDRG2, protein NDR2; alpha/beta-hydrolases | 99.35 | |
| 3afi_E | 316 | Haloalkane dehalogenase; A/B-hydrolase, hydrolase; | 99.35 | |
| 3c6x_A | 257 | Hydroxynitrilase; atomic resolution, hydroxynitril | 99.34 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.34 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.34 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.33 | |
| 2xt0_A | 297 | Haloalkane dehalogenase; hydrolase, alpha-beta hyd | 99.33 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.33 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.32 | |
| 1b6g_A | 310 | Haloalkane dehalogenase; hydrolase, alpha/beta-hyd | 99.32 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.32 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.32 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.32 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.32 | |
| 1m33_A | 258 | BIOH protein; alpha-betta-alpha sandwich, structur | 99.31 | |
| 1pja_A | 302 | Palmitoyl-protein thioesterase 2 precursor; hydrol | 99.3 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.29 | |
| 1ehy_A | 294 | Protein (soluble epoxide hydrolase); alpha/beta hy | 99.29 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.28 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.27 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.27 | |
| 3ibt_A | 264 | 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, | 99.27 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.25 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.25 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.25 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.24 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.24 | |
| 2psd_A | 318 | Renilla-luciferin 2-monooxygenase; alpha/beta-hydr | 99.24 | |
| 3l80_A | 292 | Putative uncharacterized protein SMU.1393C; alpha/ | 99.23 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.22 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.22 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.22 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.21 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.21 | |
| 1thg_A | 544 | Lipase; hydrolase(carboxylic esterase); HET: NAG N | 99.2 | |
| 3qmv_A | 280 | Thioesterase, REDJ; alpha/beta hydrolase fold, hyd | 99.2 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.2 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.2 | |
| 1r3d_A | 264 | Conserved hypothetical protein VC1974; structural | 99.2 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.19 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.19 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.19 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.19 | |
| 3b12_A | 304 | Fluoroacetate dehalogenase; dehalogease, hydrolase | 98.8 | |
| 1llf_A | 534 | Lipase 3; candida cylindracea cholesterol esterase | 99.18 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.18 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.18 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.16 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.16 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.15 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.15 | |
| 4i19_A | 388 | Epoxide hydrolase; structural genomics, PSI-biolog | 99.15 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.14 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.13 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.13 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.12 | |
| 2ogt_A | 498 | Thermostable carboxylesterase EST50; alpha/beta hy | 99.12 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.12 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.12 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.11 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.11 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.11 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.11 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.11 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.1 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.1 | |
| 2h7c_A | 542 | Liver carboxylesterase 1; enzyme, cholesteryl este | 99.1 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.09 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.08 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.07 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.07 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.07 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.07 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.06 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.06 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.05 | |
| 3fle_A | 249 | SE_1780 protein; structural genomics, APC61035.1, | 99.04 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.04 | |
| 2wj6_A | 276 | 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid | 99.02 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.02 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.01 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.01 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.01 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.01 | |
| 3qyj_A | 291 | ALR0039 protein; alpha/beta fold, hydrolase; 1.78A | 99.01 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.01 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.99 | |
| 1ea5_A | 537 | ACHE, acetylcholinesterase; hydrolase, serine hydr | 98.98 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.98 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.97 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.97 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.97 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 98.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.96 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.96 | |
| 3ds8_A | 254 | LIN2722 protein; unkonwn function, structural geno | 98.96 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.95 | |
| 2ha2_A | 543 | ACHE, acetylcholinesterase; hydrolase fold, serine | 98.94 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.94 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.94 | |
| 1p0i_A | 529 | Cholinesterase; serine hydrolase, butyrate, hydrol | 98.94 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.93 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 98.92 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.91 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 98.91 | |
| 3c5v_A | 316 | PME-1, protein phosphatase methylesterase 1; demet | 98.91 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 98.9 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 98.9 | |
| 3g02_A | 408 | Epoxide hydrolase; alpha/beta hydrolase fold, enan | 98.9 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 98.89 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.89 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.89 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.89 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.88 | |
| 3ils_A | 265 | PKS, aflatoxin biosynthesis polyketide synthase; A | 98.88 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.87 | |
| 2fj0_A | 551 | JuvenIle hormone esterase; manduca sexta, alpha-be | 98.87 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 98.86 | |
| 1kez_A | 300 | Erythronolide synthase; polyketide synthase, modul | 98.85 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.84 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.83 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 98.83 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.83 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.83 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.82 | |
| 3lcr_A | 319 | Tautomycetin biosynthetic PKS; alpha-beta hydrolas | 98.81 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.81 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.81 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.8 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.79 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.79 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.79 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.78 | |
| 2bce_A | 579 | Cholesterol esterase; hydrolase, serine esterase, | 98.78 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.78 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.78 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.78 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 98.78 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 98.77 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.77 | |
| 2k2q_B | 242 | Surfactin synthetase thioesterase subunit; A/B-hyd | 98.75 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.75 | |
| 3lp5_A | 250 | Putative cell surface hydrolase; structural genom | 98.75 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.74 | |
| 1dx4_A | 585 | ACHE, acetylcholinesterase; hydrolase, serine este | 98.74 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.73 | |
| 1gpl_A | 432 | RP2 lipase; serine esterase, hydrolase, lipid degr | 98.73 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.73 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 98.73 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.73 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.71 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.7 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.69 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 98.69 | |
| 1tca_A | 317 | Lipase; hydrolase(carboxylic esterase); HET: NAG; | 98.69 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.66 | |
| 3bix_A | 574 | Neuroligin-1, neuroligin I; esterase domain, alpha | 98.66 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 98.66 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.65 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.64 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.64 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.63 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.61 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.59 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.57 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 98.56 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.55 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.55 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 98.53 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.51 | |
| 1bu8_A | 452 | Protein (pancreatic lipase related protein 2); hyd | 98.5 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.48 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.47 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 98.45 | |
| 1w52_X | 452 | Pancreatic lipase related protein 2; detergent, cl | 98.44 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 98.44 | |
| 1ei9_A | 279 | Palmitoyl protein thioesterase 1; alpha/beta hydro | 98.41 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.4 | |
| 1ys1_X | 320 | Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor h | 98.38 | |
| 1ex9_A | 285 | Lactonizing lipase; alpha-beta hydrolase fold, pho | 98.38 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.37 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.36 | |
| 3n2z_B | 446 | Lysosomal Pro-X carboxypeptidase; alpha/beta hydro | 98.35 | |
| 3icv_A | 316 | Lipase B, CALB; circular permutation, cleavage on | 98.34 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.34 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.33 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 98.33 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.32 | |
| 2cb9_A | 244 | Fengycin synthetase; thioesterase, non-ribosomal p | 98.32 | |
| 1hpl_A | 449 | Lipase; hydrolase(carboxylic esterase); 2.30A {Equ | 98.31 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 98.31 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 98.3 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.3 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.29 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.28 | |
| 1rp1_A | 450 | Pancreatic lipase related protein 1; hydrolase, li | 98.23 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.22 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.21 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.18 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.17 | |
| 2dst_A | 131 | Hypothetical protein TTHA1544; conserved hypotheti | 98.15 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.14 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.14 | |
| 1jmk_C | 230 | SRFTE, surfactin synthetase; thioesterase, non-rib | 98.14 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.14 | |
| 2x5x_A | 342 | PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE | 98.14 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.1 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 98.09 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.09 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.07 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.05 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.05 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.04 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.04 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.01 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 97.97 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 97.96 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.96 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 97.94 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.94 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.89 | |
| 2zyr_A | 484 | Lipase, putative; fatty acid, hydrolase; HET: 1PE; | 97.88 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.8 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 97.79 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.78 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.74 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 97.74 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 97.72 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.7 | |
| 3tjm_A | 283 | Fatty acid synthase; thioesterase domain, fatty ac | 97.68 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.68 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.68 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.68 | |
| 2hih_A | 431 | Lipase 46 kDa form; A1 phospholipase, phospholipid | 97.62 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.6 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.59 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.57 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.56 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.54 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.53 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.52 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.5 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.48 | |
| 4ebb_A | 472 | Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2 | 97.42 | |
| 2dsn_A | 387 | Thermostable lipase; T1 lipase, hydrolase; 1.50A { | 97.42 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.4 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.39 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.38 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.38 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.37 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.36 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.35 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.34 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.28 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 97.27 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.27 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 97.27 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.26 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.25 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 97.22 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.2 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 97.18 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.12 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.07 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.05 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.04 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.04 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 96.88 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.83 | |
| 1whs_A | 255 | Serine carboxypeptidase II; HET: NAG FUC; 2.00A {T | 96.8 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 96.78 | |
| 1ivy_A | 452 | Human protective protein; carboxypeptidase, serine | 96.72 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.69 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.57 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.42 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.3 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.26 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 96.26 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.09 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.09 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.05 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 95.96 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 95.93 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 95.92 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 95.79 |
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-98 Score=896.68 Aligned_cols=677 Identities=41% Similarity=0.750 Sum_probs=587.5
Q ss_pred CCCCCCCCCccccCCceeeeecCccccCCCCcccCCCCHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHhhhcCCCCCC
Q 003878 6 GIDESLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKLREKITKLFDSPRYDA 85 (789)
Q Consensus 6 ~~~~~~~~p~~~~~~~~~~~~~g~~~~D~y~wled~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (789)
.....+.||+|+|+|+ ++++||+++.|||+||||.++|||++||++||+||+++|++++++++|++||+++++++++++
T Consensus 5 ~~~~~~~~p~~~~~~~-~~~~~g~~~~d~y~wl~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 83 (693)
T 3iuj_A 5 SGKARLHYPVTRQGEQ-VDHYFGQAVADPYRWLEDDRSPETEAWVKAQNAVTQDYLAQIPYRAAIKEKLAASWNYAKEGA 83 (693)
T ss_dssp -----CCCCCCCCCCC-EEEETTEEEECTTGGGGCTTSHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHSCCCEECC
T ss_pred ccccCCCCCCCCCCCe-EEEeCCccccCCchhhcCCCCHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHhhccccCCC
Confidence 3344578999999995 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEeCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEc
Q 003878 86 PFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRI 165 (789)
Q Consensus 86 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl 165 (789)
|.++|+++||++++++++|+++||++ .++++++|||+|++++++++.+++++|||||++|||+++.+|+++++|+++|+
T Consensus 84 p~~~g~~~y~~~~~~~~~~~~~~r~~-~~~~~~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl 162 (693)
T 3iuj_A 84 PFREGRYHYFFKNDGLQNQNVLWRQQ-EGKPAEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDV 162 (693)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEEC-TTSCCEEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEET
T ss_pred CEEECCEEEEEEEcCCCceeEEEEeC-CCCCcEEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEEC
Confidence 99999999999999999999899875 46778999999999999988999999999999999999999999999999999
Q ss_pred CCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeC
Q 003878 166 EDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHD 245 (789)
Q Consensus 166 ~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspD 245 (789)
+||+.+++.+.++ +..+++|| |
T Consensus 163 ~tg~~~~~~~~~~---------------------------------------------------------k~~~~~Ws-D 184 (693)
T 3iuj_A 163 ESKQPLETPLKDV---------------------------------------------------------KFSGISWL-G 184 (693)
T ss_dssp TTCSEEEEEEEEE---------------------------------------------------------ESCCCEEE-T
T ss_pred CCCCCCccccCCc---------------------------------------------------------eeccEEEe-C
Confidence 9998877655554 35789999 9
Q ss_pred CcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCC-CCeeEEEEEEecCCcEEEEEEEcCCCC
Q 003878 246 SKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE-HPKYIFSGHVTEDGQYLVMCIEENCDP 324 (789)
Q Consensus 246 g~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~ 324 (789)
|++|+|++.+.+. .+..++.+++.+||+|++++++.++++++++++ ++.++.++.|||||++|++.+.... .
T Consensus 185 g~~l~y~~~~~~~------~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~-~ 257 (693)
T 3iuj_A 185 NEGFFYSSYDKPD------GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST-S 257 (693)
T ss_dssp TTEEEEEESSCCC-------------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS-S
T ss_pred CCEEEEEEecCcc------cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC-C
Confidence 9999999987531 123445678899999999999999999999876 5666678999999999999886554 2
Q ss_pred ceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC--CeEEecc
Q 003878 325 VNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIP 402 (789)
Q Consensus 325 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~--~~~~l~~ 402 (789)
.++||++|++++. ..+..+....+..+..++++|+.|||++|.++++++|+++|+++++ .|+++++
T Consensus 258 ~~~i~~~d~~~~~------------~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~ 325 (693)
T 3iuj_A 258 GNRLYVKDLSQEN------------APLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP 325 (693)
T ss_dssp CCEEEEEETTSTT------------CCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred CcEEEEEECCCCC------------CceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec
Confidence 4699999998742 2245555555545555889999999999998889999999998875 4789999
Q ss_pred CCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEeecccCCcEEEEEEcCCCCCcEEEEE
Q 003878 403 EAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQC 481 (789)
Q Consensus 403 ~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~ 481 (789)
+.+. .+ ++++.+ ++|++.+.+++.++|++++++ |...+.|+++ .+.+..++++++++.++++++++++|+++|.+
T Consensus 326 ~~~~-~~-~~s~~g-~~lv~~~~~~g~~~l~~~d~~-g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~ 401 (693)
T 3iuj_A 326 ERQQ-VL-TVHSGS-GYLFAEYMVDATARVEQFDYE-GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRF 401 (693)
T ss_dssp CCSS-CE-EEEEET-TEEEEEEEETTEEEEEEECTT-SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEE
T ss_pred CCCC-EE-EEEEEC-CEEEEEEEECCeeEEEEEECC-CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEE
Confidence 8754 45 777776 899999999999999999998 4444778776 56777888889999999999999999999999
Q ss_pred ECCCCCceEEEeeeccCCCCCCCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHH
Q 003878 482 NLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRT 561 (789)
Q Consensus 482 dl~tg~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~ 561 (789)
|+.+++ .++++.... .+++..+.++++++++.|| ++||+++++|++...+++.|+||++|||++.+..+.|+....
T Consensus 402 d~~~g~--~~~l~~~~~-~~~~~~~~~~~~~~~~~dg-~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~ 477 (693)
T 3iuj_A 402 EPKSGA--ISLYRASAA-PFKPEDYVSEQRFYQSKDG-TRVPLIISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVA 477 (693)
T ss_dssp CTTTCC--EEEEECCCS-SCCGGGEEEEEEEEECTTS-CEEEEEEEEESSCCCSSCCCEEEECCCCTTCCCCCCCCHHHH
T ss_pred ECCCCe--EEEEEeCCC-CcChhhCeeEEEEEecCCC-cEEEEEEEecCCCCCCCCccEEEEECCCCCcCCCCccCHHHH
Confidence 999885 677776544 4777888999999999999 999999999998766789999999999999999999998777
Q ss_pred HHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC
Q 003878 562 ILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD 641 (789)
Q Consensus 562 ~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd 641 (789)
.|++ +||+|+++|+||+|++|+.|+.++....+.+.++|+++++++|++++++|++||+|+|+|+||++++++++++|+
T Consensus 478 ~l~~-~G~~v~~~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~~~~~p~ 556 (693)
T 3iuj_A 478 NWLD-LGGVYAVANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPD 556 (693)
T ss_dssp HHHH-TTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCTT
T ss_pred HHHH-CCCEEEEEeCCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHhhCcc
Confidence 7777 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEecCCcccccccccccCCccchhhcCCCCcHHH-HHHHHhcCcccCCCC-CCCCCCCCCCCCCeEEEEecCCCCC
Q 003878 642 LFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEE-FYWLIKYSPLHNVRR-PWEQNPDKPFQYPSTLLLTADHDDR 719 (789)
Q Consensus 642 ~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~-~~~l~~~sP~~~v~~-~~~~~~~~~~~~pp~Li~~g~~D~~ 719 (789)
+|+|+|+.+|++|+..++.++.+..|..+||+|.+++. +++|.++||+++++. + .+||+||+||.+|++
T Consensus 557 ~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~sp~~~~~~~~---------~~Pp~Li~~G~~D~~ 627 (693)
T 3iuj_A 557 LMRVALPAVGVLDMLRYHTFTAGTGWAYDYGTSADSEAMFDYLKGYSPLHNVRPGV---------SYPSTMVTTADHDDR 627 (693)
T ss_dssp SCSEEEEESCCCCTTTGGGSGGGGGCHHHHCCTTSCHHHHHHHHHHCHHHHCCTTC---------CCCEEEEEEESSCSS
T ss_pred ceeEEEecCCcchhhhhccCCCchhHHHHcCCccCHHHHHHHHHhcCHHHhhcccC---------CCCceeEEecCCCCC
Confidence 99999999999999998887777788899999988777 889999999999998 5 578899999999999
Q ss_pred CCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCC
Q 003878 720 VVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 720 V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
||++++.+|+++|++. ..+|+++++++++++||++..+..+..+..+.+++||.++||..
T Consensus 628 v~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 687 (693)
T 3iuj_A 628 VVPAHSFKFAATLQAD-------NAGPHPQLIRIETNAGHGAGTPVAKLIEQSADIYAFTLYEMGYR 687 (693)
T ss_dssp SCTHHHHHHHHHHHHH-------CCSSSCEEEEEEC-------CHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CChhHHHHHHHHHHhh-------CCCCCCEEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999987 33468999999999999998765666889999999999999875
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-95 Score=867.51 Aligned_cols=700 Identities=56% Similarity=1.047 Sum_probs=606.4
Q ss_pred CCCCccccCCceeeeecCccccCCCCcccCCCCHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHhhhcCCCCCCceEeC
Q 003878 11 LQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKLREKITKLFDSPRYDAPFKRG 90 (789)
Q Consensus 11 ~~~p~~~~~~~~~~~~~g~~~~D~y~wled~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 90 (789)
+.||+|+|+|++++++||+++.|||+||||+++|++++||++||++++++|++++++++|.++|+++++.++++.|.++|
T Consensus 4 ~~~p~~~~~~~~~~~~~g~~~~d~y~wl~~~~~~~~~~~~~~en~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~~dG 83 (710)
T 2xdw_A 4 FQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKERMTELYDYPKYSCHFKKG 83 (710)
T ss_dssp SCCCCCCCCTTCEEEETTEEEECTTGGGGCTTSHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHCSCEECCCEEET
T ss_pred CCCCCCCCCCCeeeeeCCcEEccCChhhcCCCCHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhhccccCCCCEEEC
Confidence 57999999993479999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCce
Q 003878 91 NKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV 170 (789)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~ 170 (789)
+++||+++.+++++..||+++..++++++|+|+|+|++++++.+.+++|||||++|||+.+.+|+++++|+++|+++|+.
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~ 163 (710)
T 2xdw_A 84 KRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE 163 (710)
T ss_dssp TEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE
T ss_pred CEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC
Confidence 99999999998888899999877788899999999999988899999999999999999999999999999999999987
Q ss_pred ecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEE
Q 003878 171 EADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFF 250 (789)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~ 250 (789)
++..+.+. ++.+++|||||+.|+
T Consensus 164 ~~~~~~~~---------------------------------------------------------~~~~~~wspDg~~l~ 186 (710)
T 2xdw_A 164 LPDVLERV---------------------------------------------------------KFSCMAWTHDGKGMF 186 (710)
T ss_dssp EEEEEEEE---------------------------------------------------------CSCCEEECTTSSEEE
T ss_pred CcccccCc---------------------------------------------------------ccceEEEEeCCCEEE
Confidence 76544443 347899999999999
Q ss_pred EEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEE
Q 003878 251 YSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYY 330 (789)
Q Consensus 251 y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~ 330 (789)
|++.+..... ..+..++..++.+||+|++++++.+++++++.++++.+..++.|||||++|++.+.+..+..++||+
T Consensus 187 ~~~~~~~~~~---~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~ 263 (710)
T 2xdw_A 187 YNAYPQQDGK---SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY 263 (710)
T ss_dssp EEECCCCSSC---CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred EEEECCcccc---ccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEE
Confidence 9987653211 1133455678889999999998888889998876666667899999999999988755433578999
Q ss_pred EECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC--CeEEeccCCCCce
Q 003878 331 CDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDV 408 (789)
Q Consensus 331 ~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~--~~~~l~~~~~~~~ 408 (789)
+|+++...+. .....+..+....+.....|++||+.|++.++.++++++|+++|+++++ .|+.++++.+...
T Consensus 264 ~d~~~~~~~~------~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 337 (710)
T 2xdw_A 264 CDLQQESNGI------TGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV 337 (710)
T ss_dssp EEGGGSSSSS------CSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred EECccccccc------CCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCe
Confidence 9987610000 0011244555544444556899999999999988889999999998875 4789999876567
Q ss_pred eeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCc
Q 003878 409 LESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETP 488 (789)
Q Consensus 409 i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~ 488 (789)
+.++.+++++++++.++.++..+|+++++.+|+..+.|+++.+.+..++++++++.++++++|+++|+++|+||+.+++.
T Consensus 338 ~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 417 (710)
T 2xdw_A 338 LEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (710)
T ss_dssp EEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCcc
Confidence 88899985589999999999999999999768766788888777888889999999999999999999999999998841
Q ss_pred eEEEeeeccCCCCCCCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCC
Q 003878 489 EMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLG 568 (789)
Q Consensus 489 ~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G 568 (789)
+.++++....++|++..+..+++++++.|| .+|++++++|++...+++.|+||++|||++....+.|+..+..|++++|
T Consensus 418 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~dg-~~i~~~~~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~~G 496 (710)
T 2xdw_A 418 EPRVFREVTVKGIDASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMG 496 (710)
T ss_dssp CCEEEEECCCTTCCGGGEEEEEEEEECTTS-CEEEEEEEEETTCCCSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHC
T ss_pred ceEEeeecccCCcCccccEEEEEEEEcCCC-CEEEEEEEecCCCCCCCCccEEEEEcCCCCCcCCCcccHHHHHHHHhCC
Confidence 156777766666888888999999999999 9999999999987667889999999999999888999887666665489
Q ss_pred eEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEe
Q 003878 569 AVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA 648 (789)
Q Consensus 569 ~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~ 648 (789)
|+|+++|+||+|++|..|+.++...++.+.++|+++++++|++++++|++||+|+|+|+||++++++++++|++|+|+|+
T Consensus 497 ~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~a~~~p~~~~~~v~ 576 (710)
T 2xdw_A 497 GVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIA 576 (710)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEE
T ss_pred cEEEEEccCCCCCCChHHHHhhhhhcCCchHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHHhCccceeEEEE
Confidence 99999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCC-----CCCCCCCCCCCCCCeEEEEecCCCCCCCcH
Q 003878 649 HVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVR-----RPWEQNPDKPFQYPSTLLLTADHDDRVVPL 723 (789)
Q Consensus 649 ~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~-----~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~ 723 (789)
.+|++|+..++.++.+..|..+||+|.+++.++.|.++||++++. .+ .+||+||+||++|.+||++
T Consensus 577 ~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~~~~~---------~~pP~Li~~G~~D~~v~~~ 647 (710)
T 2xdw_A 577 QVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLPEADDI---------QYPSMLLLTADHDDRVVPL 647 (710)
T ss_dssp ESCCCCTTTGGGSTTGGGGHHHHCCTTSHHHHHHHHHHCGGGCCCCCSSTTC---------CCCEEEEEEETTCCSSCTH
T ss_pred cCCcccHhhccccCCChhHHHhCCCCCCHHHHHHHHHhCcHhhhcccccccC---------CCCcEEEEEeCCCCccChh
Confidence 999999999887777777889999998888899999999999998 54 4689999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCCCCC
Q 003878 724 HSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASWVE 789 (789)
Q Consensus 724 ~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~~ 789 (789)
++.+++++|+...++ ..+++.++++++++++||++..+..+..+..+.+++||.++||..|.+
T Consensus 648 ~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~~ 710 (710)
T 2xdw_A 648 HSLKFIATLQYIVGR---SRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDWIP 710 (710)
T ss_dssp HHHHHHHHHHHHTTT---STTCCSCEEEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHhhhcc---ccCCCcCEEEEEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 999999999875111 123478999999999999998766556789999999999999998763
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-93 Score=852.64 Aligned_cols=674 Identities=36% Similarity=0.668 Sum_probs=590.0
Q ss_pred CCCccccCCceeeeecCccccCCCCcccCCCCHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHhhhcCCCCCCceEeCC
Q 003878 12 QYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKLREKITKLFDSPRYDAPFKRGN 91 (789)
Q Consensus 12 ~~p~~~~~~~~~~~~~g~~~~D~y~wled~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 91 (789)
.||+|+|+|+ ++++||+++.|||+||||+++|+|++||++||+||+++|++++++++|+++|+++++.++++.|.++|+
T Consensus 2 ~~p~~~~~~~-~~~~~g~~~~d~y~wl~~~~~~~~~~~~~~en~~t~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~~dG~ 80 (695)
T 2bkl_A 2 SYPATRAEQV-VDTLHGVQVADPYRWLEDEKAPEVQTWMTAQNAHAREALAKFPGREALAARFKELFYTDSVSTPSRRNG 80 (695)
T ss_dssp CCSCCCCCCC-EEEETTEEEECTTGGGGCTTSHHHHHHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHSCCEECCCEEETT
T ss_pred CCCCCCCCCe-eeeeCCcEEecCChHhcCCCCHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHhhccccCCCCEEECC
Confidence 6899999995 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCcee
Q 003878 92 KYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE 171 (789)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~ 171 (789)
++||+++++++++..||+++..++++++|+|+|++++++.+.+.+++|||||++|||+.+.+|+++.+|+++|++||+.+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~ 160 (695)
T 2bkl_A 81 RFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS 160 (695)
T ss_dssp EEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC
T ss_pred EEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc
Confidence 99999999988889999998777888999999999999889999999999999999999999999999999999999876
Q ss_pred -cccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEE
Q 003878 172 -ADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFF 250 (789)
Q Consensus 172 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~ 250 (789)
.+.+.++ ++.+++|||||+.|+
T Consensus 161 ~~~~~~~~---------------------------------------------------------~~~~~~wspDg~~l~ 183 (695)
T 2bkl_A 161 KVDVIEGG---------------------------------------------------------KYATPKWTPDSKGFY 183 (695)
T ss_dssp SSCCBSCC---------------------------------------------------------TTCCCEECTTSSEEE
T ss_pred CCcccCcc---------------------------------------------------------cccceEEecCCCEEE
Confidence 4444443 247899999999999
Q ss_pred EEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEE
Q 003878 251 YSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYY 330 (789)
Q Consensus 251 y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~ 330 (789)
|++.+... .+..++..++.+||+|++++++.+++++++.++++.++.++.|||||++|++.+.+.. ..++||+
T Consensus 184 ~~~~d~~~------~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~-~~~~l~~ 256 (695)
T 2bkl_A 184 YEWLPTDP------SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW-SENDVYW 256 (695)
T ss_dssp EEECCCCT------TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT-TEEEEEE
T ss_pred EEEecCCC------CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC-CceEEEE
Confidence 99876531 1233455778899999999998888899988776666778999999999999887652 3678999
Q ss_pred EECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC--CeEEeccCCCCce
Q 003878 331 CDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDV 408 (789)
Q Consensus 331 ~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~--~~~~l~~~~~~~~ 408 (789)
++..+++ +..+....+.....+.++|+ ||+.++.++++++|+++|+++++ .|+.++++.+...
T Consensus 257 ~~~~~~~--------------~~~l~~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 321 (695)
T 2bkl_A 257 KRPGEKD--------------FRLLVKGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSAS 321 (695)
T ss_dssp ECTTCSS--------------CEEEEECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCE
T ss_pred EcCCCCc--------------eEEeecCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCe
Confidence 9765431 34444433333333458888 99999988789999999998765 3789998876677
Q ss_pred eeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 409 LESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 409 i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+.++++++ +++++.++.++..+|++++++ |+..+.+.++ .+.+..++++++++.++++++|+++|+++|++|+.+++
T Consensus 322 l~~~~~~~-~~lv~~~~~dg~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 322 LLSVSIVG-GHLSLEYLKDATSEVRVATLK-GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEEEEEET-TEEEEEEEETTEEEEEEEETT-CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred EEEEEEEC-CEEEEEEEECCEEEEEEEeCC-CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 88999985 899999999999999999986 6555778776 67777788889999999999999999999999999985
Q ss_pred ceEEEeeeccCCCCCCCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcC
Q 003878 488 PEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHL 567 (789)
Q Consensus 488 ~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~ 567 (789)
.++++..... |++..+..+++++++.|| .+|++++++|++...+++.|+||++|||++....+.|......|++ +
T Consensus 400 --~~~l~~~~~~-~~~~~~~~~~~~~~~~dg-~~i~~~~~~p~~~~~~~~~p~vl~~hGg~~~~~~~~~~~~~~~l~~-~ 474 (695)
T 2bkl_A 400 --SELWAKVDVP-MNPEQYQVEQVFYASKDG-TKVPMFVVHRKDLKRDGNAPTLLYGYGGFNVNMEANFRSSILPWLD-A 474 (695)
T ss_dssp --EEEEEECCCS-SCGGGEEEEEEEEECTTS-CEEEEEEEEETTCCCSSCCCEEEECCCCTTCCCCCCCCGGGHHHHH-T
T ss_pred --EEEEecCCCC-CCHHHCeEEEEEEECCCC-CEEEEEEEECCCCCCCCCccEEEEECCCCccccCCCcCHHHHHHHh-C
Confidence 6777765543 777778899999999999 9999999999987667889999999999999888889877666776 9
Q ss_pred CeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEE
Q 003878 568 GAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCAL 647 (789)
Q Consensus 568 G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v 647 (789)
||+|+++|+||+|++|..|+..+....+.+.++|+++++++|++++++|++||+|+|+|+||++++++++++|++|+|+|
T Consensus 475 G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~~~~~p~~~~~~v 554 (695)
T 2bkl_A 475 GGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVV 554 (695)
T ss_dssp TCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEE
T ss_pred CCEEEEEecCCCCCcCHHHHHhhHhhcCCCcHHHHHHHHHHHHHcCCCCcccEEEEEECHHHHHHHHHHHhCCcceEEEE
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHH
Q 003878 648 AHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLK 727 (789)
Q Consensus 648 ~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~ 727 (789)
+.+|++|+..+..+..+..|..+||+|.+++.++.|.++||+++++.+ ..+||+||+||.+|.+||++++.+
T Consensus 555 ~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~--------~~~~P~Li~~G~~D~~v~~~~~~~ 626 (695)
T 2bkl_A 555 CAVPLLDMVRYHLFGSGRTWIPEYGTAEKPEDFKTLHAYSPYHHVRPD--------VRYPALLMMAADHDDRVDPMHARK 626 (695)
T ss_dssp EESCCCCTTTGGGSTTGGGGHHHHCCTTSHHHHHHHHHHCGGGCCCSS--------CCCCEEEEEEETTCSSSCTHHHHH
T ss_pred EcCCccchhhccccCCCcchHHHhCCCCCHHHHHHHHhcChHhhhhhc--------CCCCCEEEEeeCCCCCCChHHHHH
Confidence 999999999887766677788899999888899999999999999986 357999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCCC
Q 003878 728 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASW 787 (789)
Q Consensus 728 ~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~ 787 (789)
++++|++. ...|.++++++++++||++..+..+..+..+.+++||.++|+..+
T Consensus 627 ~~~~l~~~-------~~~~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~ 679 (695)
T 2bkl_A 627 FVAAVQNS-------PGNPATALLRIEANAGHGGADQVAKAIESSVDLYSFLFQVLDVQG 679 (695)
T ss_dssp HHHHHHTS-------TTCCSCEEEEEETTCBTTBCSCHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHhh-------ccCCCCEEEEEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999983 222789999999999999876656567889999999999998764
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-91 Score=841.23 Aligned_cols=678 Identities=42% Similarity=0.695 Sum_probs=576.6
Q ss_pred CCCCCccccCCceeeeecCccccCCCCcccCC--CCHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHhhhcCCCCCCce
Q 003878 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDP--DAEEVKDFVQKQVELTDSVLKNCDVRDKLREKITKLFDSPRYDAPF 87 (789)
Q Consensus 10 ~~~~p~~~~~~~~~~~~~g~~~~D~y~wled~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (789)
...||+|+|+|+ ++++||+++.|||+||||. ++|+|++||++||++++++|++++.+++|+++|+++++.++++.|.
T Consensus 37 ~~~~p~~~~~~~-~~~~~g~~~~d~y~wl~~~~~~~~~~~~~~~aen~~t~~~l~~~~~~~~l~~~~~~~~~~~~~~~p~ 115 (741)
T 1yr2_A 37 LPPYPASPQVPL-VEDHFGEKVSDPWRWLEADVRTDAKVAAWVQAQSAYTAAYLKQLPERAALEKRMKALIDYERFGLPQ 115 (741)
T ss_dssp -CCCCCCCCCCC-EEEETTEEEECTTGGGGSCTTTCHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHSCCCEECCCE
T ss_pred cCCCCCCCCCCe-eeeeCCcEEccCcHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHhhcccccCCCE
Confidence 357999999995 7999999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred EeCCEEEEEEEcCCCCeeEEEEecCC---CCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEE
Q 003878 88 KRGNKYFYFHNTGLQPQSVLYVQDSL---DAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMR 164 (789)
Q Consensus 88 ~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~d 164 (789)
++|+++||+++++++++..||+++.. ++++++|+|+|+|++++++.+.+++|||||++|||+.+.+|+++.+|+++|
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 99999999999999888999999876 678899999999999888889999999999999999999999999999999
Q ss_pred cCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEe
Q 003878 165 IEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTH 244 (789)
Q Consensus 165 l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wsp 244 (789)
+++|+.+...+.+. ++.+++|||
T Consensus 196 l~tg~~~~~~~~~~---------------------------------------------------------~~~~~~wsp 218 (741)
T 1yr2_A 196 VADGKPLADELKWV---------------------------------------------------------KFSGLAWLG 218 (741)
T ss_dssp TTTCCEEEEEEEEE---------------------------------------------------------ESCCCEEST
T ss_pred CCCCCCCCccCCCc---------------------------------------------------------eeccEEEEC
Confidence 99998876544443 346899999
Q ss_pred CCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCC
Q 003878 245 DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDP 324 (789)
Q Consensus 245 Dg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~ 324 (789)
| +.|+|++.+.+.. .+..++.+++.+||+|++++++.+++++++.++++.++.++.|||||++|++.+.+..+.
T Consensus 219 D-~~l~~~~~~~~~~-----~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~ 292 (741)
T 1yr2_A 219 N-DALLYSRFAEPKE-----GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDP 292 (741)
T ss_dssp T-SEEEEEECCCC-------------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCS
T ss_pred C-CEEEEEEecCccc-----ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCC
Confidence 9 9999998765311 022344567889999999999888889998877655667899999999999998765434
Q ss_pred ceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCC-CCeEEeccC
Q 003878 325 VNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP-NDWFEVIPE 403 (789)
Q Consensus 325 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~-~~~~~l~~~ 403 (789)
.++||++|++++. ..++..+....+.....++|+|+.|++.++.++++++|+++|++++ ..|+.++++
T Consensus 293 ~~~l~~~d~~~~~-----------~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~ 361 (741)
T 1yr2_A 293 VNTVHVARVTNGK-----------IGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE 361 (741)
T ss_dssp CCEEEEEEEETTE-----------ECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC
T ss_pred cceEEEEECCCCC-----------CcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC
Confidence 6899999997631 0113445444433444467999999999999888999999999885 358899987
Q ss_pred CCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEE
Q 003878 404 AERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 404 ~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~d 482 (789)
.+ ..+.++++++ +++++.++.++..+|++++++ |+..+.++++ .+.+..++++++++.++++++|+++|+++|+||
T Consensus 362 ~~-~~l~~~~~~~-~~lv~~~~~dg~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 438 (741)
T 1yr2_A 362 SK-DNLESVGIAG-NRLFASYIHDAKSQVLAFDLD-GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALD 438 (741)
T ss_dssp CS-SEEEEEEEEB-TEEEEEEEETTEEEEEEEETT-SCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEE
T ss_pred CC-CeEEEEEEEC-CEEEEEEEECCEEEEEEEeCC-CCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 64 4678888886 899999999999999999986 5555778876 677878889999999999999999999999999
Q ss_pred CCCCCceEEEeeeccCCCCCCCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHH
Q 003878 483 LKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTI 562 (789)
Q Consensus 483 l~tg~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~ 562 (789)
+.++ +.+++++.. ..|++..+..+++++++.|| .+|++++++|++. +++.|+||++|||++....+.|+.....
T Consensus 439 ~~tg--~~~~l~~~~-~~~~~~~~~~~~~~~~~~dg-~~i~~~~~~p~~~--~~~~p~vl~~hGg~~~~~~~~~~~~~~~ 512 (741)
T 1yr2_A 439 PATA--KTTPWEPVH-LTFDPADFRVEQVFYPSKDG-TKVPMFIVRRKDA--KGPLPTLLYGYGGFNVALTPWFSAGFMT 512 (741)
T ss_dssp TTTT--EEEECSCCC-CSSCGGGEEEEEEEEECTTS-CEEEEEEEEETTC--CSCCCEEEECCCCTTCCCCCCCCHHHHH
T ss_pred CCCC--cEEEEecCC-CCCChhHCEEEEEEEEcCCC-CEEEEEEEecCCC--CCCCcEEEEECCCCCccCCCCcCHHHHH
Confidence 9998 467776633 35788788899999999999 9999999999975 5789999999999999888899887766
Q ss_pred HHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc
Q 003878 563 LMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDL 642 (789)
Q Consensus 563 ~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~ 642 (789)
|++ +||+|+++|+||+|++|+.|+..+...++.+.++|+++++++|++++++|++||+|+|+|+||++++++++++|++
T Consensus 513 l~~-~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~~~~ri~i~G~S~GG~la~~~~~~~p~~ 591 (741)
T 1yr2_A 513 WID-SGGAFALANLRGGGEYGDAWHDAGRRDKKQNVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDL 591 (741)
T ss_dssp HHT-TTCEEEEECCTTSSTTHHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHHCGGG
T ss_pred HHH-CCcEEEEEecCCCCCCCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHEEEEEECHHHHHHHHHHHhCchh
Confidence 665 9999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCC-CCCCCCCCCCCCCeEEEEecCCCCCCC
Q 003878 643 FGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRR-PWEQNPDKPFQYPSTLLLTADHDDRVV 721 (789)
Q Consensus 643 f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~-~~~~~~~~~~~~pp~Li~~g~~D~~V~ 721 (789)
|+|+|+.+|++|+..+..+..+..|..+||+|.+++.++.+.++||+++++. + .+||+||+||++|.+||
T Consensus 592 ~~~~v~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~sp~~~~~~~~---------~~~P~Li~~G~~D~~v~ 662 (741)
T 1yr2_A 592 FAAASPAVGVMDMLRFDQFTAGRYWVDDYGYPEKEADWRVLRRYSPYHNVRSGV---------DYPAILVTTADTDDRVV 662 (741)
T ss_dssp CSEEEEESCCCCTTSGGGSTTGGGGHHHHCCTTSHHHHHHHHTTCGGGCCCTTS---------CCCEEEEEECSCCSSSC
T ss_pred heEEEecCCccccccccCCCCCchhHHHcCCCCCHHHHHHHHHcCchhhhhccC---------CCCCEEEEeeCCCCCCC
Confidence 9999999999999988776677778889999988888999999999999987 5 46899999999999999
Q ss_pred cHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCCCC
Q 003878 722 PLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASWV 788 (789)
Q Consensus 722 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 788 (789)
++++.+++++|+.. .+.|.++++++++++||++..+..+..+..+.+++||.++|+..+.
T Consensus 663 ~~~~~~~~~~l~~~-------~~~g~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 722 (741)
T 1yr2_A 663 PGHSFKYTAALQTA-------AIGPKPHLIRIETRAGHGSGKPIDKQIEETADVQAFLAHFTGLTPR 722 (741)
T ss_dssp THHHHHHHHHHHHS-------CCCSSCEEEEEC---------CHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred hhHHHHHHHHHhhh-------hcCCCCEEEEEeCCCCcCCCCCHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999983 2238999999999999998776665678899999999999987753
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-91 Score=835.41 Aligned_cols=676 Identities=25% Similarity=0.408 Sum_probs=566.4
Q ss_pred CCCCCCCCCCCCCCccccCCceeeeecC---------------ccccCCCCcccCCC--CHHHHHHHHHHHHHHHHHHcC
Q 003878 1 MASLSGIDESLQYPVARRDESVVDDYHG---------------VKIVDPYRWLEDPD--AEEVKDFVQKQVELTDSVLKN 63 (789)
Q Consensus 1 ~~~~~~~~~~~~~p~~~~~~~~~~~~~g---------------~~~~D~y~wled~~--~~~~~~~~~~~~~~~~~~~~~ 63 (789)
|+|.+.......||+|+|+|+ +++ || +++.|||+||||++ +|||++||++||+||+++|++
T Consensus 21 ~~~~~~~~~~~~~p~~~~~~~-~~~-~g~~~~~~~~~~~~~~~~~~~d~y~wl~d~~~~~~~~~~~~~~~n~~~~~~~~~ 98 (751)
T 2xe4_A 21 MSSDSSVAASAQPPIAAKKPH-RVT-LGYVEGEDRGPNPMNPPRYREDPYFWMRDDDRKDPAVIEHLNKEKVYFQARSAD 98 (751)
T ss_dssp ---------CCCCCCCCCCCC-EEE-ESCCTTSCCCSSCCSSCEEEECTTGGGCCTTSCCHHHHHHHHHHHHHHHHHHGG
T ss_pred ccccccCCCCCCCCCCCCCCe-eec-CCCcccccccccccCCCeEEeeCCccccCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 455544444467999999995 788 99 99999999999999 999999999999999999999
Q ss_pred C-ccHHHHHHHHHhhhcCCCCCCceEeCCEEEEEEEcCCCCeeEEEEecC---CCC--CceEEeccCCCCCCCc-EEEEe
Q 003878 64 C-DVRDKLREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDS---LDA--KAKVLLDPNTLSDDGT-AALIK 136 (789)
Q Consensus 64 ~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~l~d~~~~~~~~~-~~~~~ 136 (789)
+ +++++|++||++++..+++++|.++|+++||.++.+++++.++|+++. .++ ++++|+|+|++++++. +.++.
T Consensus 99 ~~~~~~~l~~e~~~~~~~~~~~~p~~~g~~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~~~ 178 (751)
T 2xe4_A 99 IAQLRDDIYAEHISHINEDDMSAPYVYGKYRYYTREVKGKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDVME 178 (751)
T ss_dssp GHHHHHHHHHHHHHTSCSSEECCCEEETTEEEEEEECTTCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEEEE
T ss_pred hhHHHHHHHHHHHHhcccccCCCCeEECCEEEEEEECCCCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEEee
Confidence 9 999999999999999999999999999999999999988888888875 444 6799999999998854 58999
Q ss_pred EEeC-CCCcEEEEEEecCCceEEEEEEEEcCCC-ceecccccccccccccCccceeeeeeccccccccccccccccceee
Q 003878 137 VSVS-EDAKYLAYALSYSGSDWATIKLMRIEDQ-IVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFF 214 (789)
Q Consensus 137 ~~~S-pDg~~la~~~~~~g~~~~~i~v~dl~tg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 214 (789)
++|| |||++|||+.+..|+++++|+++|+++| +.+++.+.+.
T Consensus 179 ~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~------------------------------------ 222 (751)
T 2xe4_A 179 VKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGT------------------------------------ 222 (751)
T ss_dssp EEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEE------------------------------------
T ss_pred eEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCc------------------------------------
Confidence 9999 9999999999999999999999999999 7655444443
Q ss_pred EEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEe
Q 003878 215 FYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK 294 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~ 294 (789)
..+++|||||++|+|++.+. ..++.+||+|++++++.+++++++
T Consensus 223 ----------------------~~~~~WspDg~~l~y~~~d~--------------~~~~~~v~~~~lgt~~~~~~lv~~ 266 (751)
T 2xe4_A 223 ----------------------NGEIVWGPDHTSLFYVTKDE--------------TLRENKVWRHVMGKLQSEDVCLYE 266 (751)
T ss_dssp ----------------------CSCCEECSSTTEEEEEEECT--------------TCCEEEEEEEETTSCGGGCEEEEE
T ss_pred ----------------------eeeEEEecCCCEEEEEEECC--------------CCCCCEEEEEECCCCchhcEEEEe
Confidence 47899999999999998653 345678999999998888889998
Q ss_pred cCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCcc--Eeeeccc-cceeEEEe-cCC
Q 003878 295 DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPF--VKLIDGF-DAQYEVIA-NDD 370 (789)
Q Consensus 295 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~--~~l~~~~-~~~~~~~s-~dG 370 (789)
+++.. +..++.|||||++|++.+.... .++||++|++++. ..+ +.++.+. ...+. .. ++|
T Consensus 267 ~~~~~-~~~~~~~SpDg~~l~~~~~~~~--~~~l~~~d~~~~~------------~~~~~~~l~~~~~~~~~s-~~~~~g 330 (751)
T 2xe4_A 267 EHNPL-FSAFMYKAADTNTLCIGSQSPE--TAEVHLLDLRKGN------------AHNTLEIVRPREKGVRYD-VQMHGT 330 (751)
T ss_dssp CCCTT-CEEEEEECTTSSEEEEEEECSS--CEEEEEEESSSCT------------TCCCEEESSCCCTTCCEE-EEEETT
T ss_pred cCCCc-eEEEEEECCCCCEEEEEecCCC--CceEEEEECCCCC------------CCceeEEeecCCCCceEE-EeeeeC
Confidence 76543 4568899999999999986543 6899999998741 112 3333322 11222 22 349
Q ss_pred CEEEEEECCC-CCCceEEEEECCCCCCeEE-eccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEEC-------CCCc
Q 003878 371 TVFTFLTNKD-APKYKIIRVDLKEPNDWFE-VIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL-------KNGS 441 (789)
Q Consensus 371 ~~l~~~tn~~-~~~~~L~~~dl~~~~~~~~-l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl-------~tG~ 441 (789)
+.|||++|++ +++++|++++++++..|+. ++++..+..+.++.+++ +++++.++.++..+|+++++ ++|+
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~-~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~ 409 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRS-NYLVVAGRRAGLTRIWTMMADSQDGVFKAGT 409 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECS-SEEEEEEEETTEEEEEEEECCTTTSCCCTTT
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEEC-CEEEEEEEeCCEEEEEEEecccccccccCCc
Confidence 9999999987 7899999999986434777 88887666788899886 89999999999999999996 5455
Q ss_pred eeeecccC-CeeEEEeec----ccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeeeccCC-CCCCCCCcEEEEEEec
Q 003878 442 LLHQLPIE-IGSVNAISA----RREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIP-GFDRSEFHVHQVFVPS 515 (789)
Q Consensus 442 ~~~~l~~~-~~~v~~~s~----s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~~~~~-~~~~~~~~~~~~~~~s 515 (789)
..+.|+++ .+.+..+++ +++++.++++++|+++|+++|.+|+.+++ .+++++...+ .+++..+.++++++++
T Consensus 410 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~s 487 (751)
T 2xe4_A 410 GLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS--RTAVKVREVGGGFDAANYKVERRFATA 487 (751)
T ss_dssp CCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC--EEEEEECCCCTTCCGGGEEEEEEEEEC
T ss_pred cceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc--EEEEeccccccCCCccceEEEEEEEEC
Confidence 13677766 333335543 45888899999999999999999999885 6777766554 5777788899999999
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHh-cccccC
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK-GGALAK 594 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~-~~~~~~ 594 (789)
.|| .+|++++++|++..++++.|+||++|||++....+.|+.....|++ +||+|+++|+||+|++|+.|+. ++...+
T Consensus 488 ~dG-~~i~~~l~~p~~~~~~~~~P~vl~~HGg~~~~~~~~~~~~~~~l~~-~G~~v~~~d~RG~g~~G~~~~~~~~~~~~ 565 (751)
T 2xe4_A 488 PDQ-TKIPLSVVYHKDLDMSQPQPCMLYGYGSYGLSMDPQFSIQHLPYCD-RGMIFAIAHIRGGSELGRAWYEIGAKYLT 565 (751)
T ss_dssp TTC-CEEEEEEEEETTSCTTSCCCEEEECCCCTTCCCCCCCCGGGHHHHT-TTCEEEEECCTTSCTTCTHHHHTTSSGGG
T ss_pred CCC-cEEEEEEEcCCCCCCCCCccEEEEECCCCCcCCCCcchHHHHHHHh-CCcEEEEEeeCCCCCcCcchhhccccccc
Confidence 999 9999999999987667889999999999998888888876665655 9999999999999999999999 988888
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCC----ccchhh
Q 003878 595 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG----HAWVSD 670 (789)
Q Consensus 595 ~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~----~~~~~e 670 (789)
+.+.++|+++++++|++++++|++||+|+|+|+||++++++++++|++|+|+|+.+|++|+..++..... ..| .+
T Consensus 566 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~-~~ 644 (751)
T 2xe4_A 566 KRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFVDVMTTMCDPSIPLTTGEW-EE 644 (751)
T ss_dssp THHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCHHHHHTCTTSTTHHHHT-TT
T ss_pred cCccHHHHHHHHHHHHHCCCCCcccEEEEEECHHHHHHHHHHHhCchheeEEEEeCCcchHHhhhcccCcccchhhH-HH
Confidence 9999999999999999999999999999999999999999999999999999999999999776421111 123 67
Q ss_pred cCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEE
Q 003878 671 FGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPII 750 (789)
Q Consensus 671 ~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 750 (789)
||+|.+++.++.+.++||+.+++++ .+||+||+||++|.+||++++.+++++|+.. ...+.++.
T Consensus 645 ~g~p~~~~~~~~~~~~sp~~~~~~~---------~~Pp~Lii~G~~D~~vp~~~~~~~~~~L~~~-------~~~~~~~~ 708 (751)
T 2xe4_A 645 WGNPNEYKYYDYMLSYSPMDNVRAQ---------EYPNIMVQCGLHDPRVAYWEPAKWVSKLREC-------KTDNNEIL 708 (751)
T ss_dssp TCCTTSHHHHHHHHHHCTGGGCCSS---------CCCEEEEEEETTCSSSCTHHHHHHHHHHHHH-------CCSCCCEE
T ss_pred cCCCCCHHHHHHHHhcChhhhhccC---------CCCceeEEeeCCCCCCCHHHHHHHHHHHHhc-------CCCCceEE
Confidence 8999888888899999999999986 4678999999999999999999999999987 23356788
Q ss_pred EEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCCCC
Q 003878 751 GRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASWV 788 (789)
Q Consensus 751 l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 788 (789)
+++++++||++.....+..+..+.+++||.++||..|.
T Consensus 709 ~~~~~~~gH~~~~~~~~~~~~~~~~~~Fl~~~l~~~~~ 746 (751)
T 2xe4_A 709 LNIDMESGHFSAKDRYKFWKESAIQQAFVCKHLKSTVR 746 (751)
T ss_dssp EEEETTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCSC
T ss_pred EEECCCCCCCCcCChhHHHHHHHHHHHHHHHHhCCCch
Confidence 99999999998876655678889999999999998764
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-89 Score=807.44 Aligned_cols=665 Identities=24% Similarity=0.369 Sum_probs=562.0
Q ss_pred eeecCccccCCCCcccCCCCHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHhhhcCC-CCCCceEeCCEEEEEEEcCCC
Q 003878 24 DDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKLREKITKLFDSP-RYDAPFKRGNKYFYFHNTGLQ 102 (789)
Q Consensus 24 ~~~~g~~~~D~y~wled~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~ 102 (789)
+.-||+++.|||+||||.++||+++||++||++|.++|++++.+++|+++|+++++++ +++.|+++|+++||+|+++.+
T Consensus 13 ~~~~~~~~~Dpy~wLEd~~~~~~~~wv~aqN~~T~~~l~~~p~~~~l~~~~~~~~~~~~ri~~p~~~g~~~y~f~~d~~~ 92 (711)
T 4hvt_A 13 DNNKQIFNPKETKFLEEAEGVEALEWAKERTSKTEKALQAMQEYKQIKKEIETIFYDQRKTPYGVIRKGYVYNFWMDDKN 92 (711)
T ss_dssp -------CHHHHGGGGSSSSSHHHHHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHTCTTSCCCCEEETTEEEEEECCSSC
T ss_pred cCCCceeeCCCchhhcCCCCHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHhccccccCCcEEECCEEEEEEecCCC
Confidence 4568999999999999999999999999999999999999999999999999999987 899999999999999999999
Q ss_pred CeeEEEEecCC------CCCceEEeccCCCCCC-Cc-EEEEeEE-eCCCCcEEEEEEecCCceEEEEEEEEcCCCceecc
Q 003878 103 PQSVLYVQDSL------DAKAKVLLDPNTLSDD-GT-AALIKVS-VSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD 173 (789)
Q Consensus 103 ~~~~~~~~~~~------~~~~~~l~d~~~~~~~-~~-~~~~~~~-~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~ 173 (789)
+| +||||.++ +++|+||||+|+|+++ |+ +.+.+++ +||||+++||+++.+|+|+.+|+++|++|++.+++
T Consensus 93 ~~-gl~rrt~~~~~~~~~p~wevllD~d~l~~~~g~~~~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~ 171 (711)
T 4hvt_A 93 PQ-GLWRRTLVDNYSKDKPNWEVLIDFDKLSKKIGKKVAYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN 171 (711)
T ss_dssp SS-CEEEEEEHHHHTSSSCCCEEEEEHHHHHHHHTSCEEEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT
T ss_pred Cc-EEEEEccchhcccCCCCcEEEeccccccccCCCcEEEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC
Confidence 99 79999654 5779999999999977 65 8999998 99999999999999999999999999999998876
Q ss_pred ccc-ccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEE
Q 003878 174 ALS-WVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYS 252 (789)
Q Consensus 174 ~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~ 252 (789)
.+. +.+ .|| + +| .+++.++|. |++++||.
T Consensus 172 ~~~~~~k---------------------~~~-~----------------------~~-----~~~~~~~W~-d~~~~~~~ 201 (711)
T 4hvt_A 172 GFEPITN---------------------SGK-L----------------------LE-----GKFTYPTWI-NKDTIIFN 201 (711)
T ss_dssp CSCCBCT---------------------TCC-B----------------------CC-----EETCCEEEE-ETTEEEEC
T ss_pred Ccccccc---------------------ccc-c----------------------cc-----cccceeeEE-CCCEEEEE
Confidence 555 210 000 0 00 035677998 77888887
Q ss_pred EccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcE----EEEEEEcCCCCceEE
Q 003878 253 RYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQY----LVMCIEENCDPVNKV 328 (789)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~----l~~~~~~~~~~~~~i 328 (789)
+... .+..+++++++++|+|++||+++++++||++++.+. ..++..++|+++ +++... .+...+++
T Consensus 202 ~~~~--------~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~ 271 (711)
T 4hvt_A 202 LVLH--------KNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYI-YVSAGKLLSDTISSSLIFISAN-KDFYNYDN 271 (711)
T ss_dssp CCCS--------TTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSC-EEEEEESSCTTTCSSEEEEEEE-SSSSCEEE
T ss_pred eCCC--------CCCcCcCCCCCEEEEEECCCChHHCeEEeccCCCce-EEEEEEecCCCceEEEEEEEEe-cccCceeE
Confidence 5432 245677899999999999999999999999987655 457788999985 455443 23345899
Q ss_pred EEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCC-------CCCceEEEEECCCC-------
Q 003878 329 YYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKD-------APKYKIIRVDLKEP------- 394 (789)
Q Consensus 329 ~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~-------~~~~~L~~~dl~~~------- 394 (789)
|+++++.. ...+.++....+... ... .++++|+.+..+ .++++|++++++++
T Consensus 272 ~~~~~~~~------------~~~~~~l~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 337 (711)
T 4hvt_A 272 YILDTKYK------------NLKLQKINMPSDATL-QGS-FKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDK 337 (711)
T ss_dssp EEEECSSS------------SCEEEECCSCTTCEE-EEE-ETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGC
T ss_pred EEEcCCCC------------CCcceEeecCCcceE-eee-ECCEEEEEECcccccccccCCCCeEEEEECCccccccccc
Confidence 99997641 112344433333222 223 366888876432 47899999998763
Q ss_pred CCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCc-eeee-cccC-CeeEEEeecccCCcEEEEEEcC
Q 003878 395 NDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGS-LLHQ-LPIE-IGSVNAISARREDSVVFISFTS 471 (789)
Q Consensus 395 ~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~-~~~~-l~~~-~~~v~~~s~s~d~~~l~~~~ss 471 (789)
..|++++++..+..++++.+++ +++++.+..++.++|+++++++|+ ..+. +.+| .+.+...+.+++++.++++++|
T Consensus 338 ~~~~~~~~~~~~~~l~~~~~~~-~~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss 416 (711)
T 4hvt_A 338 TSLKILFTPTANEVFNFISTTK-DRVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIEN 416 (711)
T ss_dssp TTCEEEECCCTTEEEEEEEECS-SCEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEEC
T ss_pred ccceEEECCCCCCeEEEEEEEC-CEEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEec
Confidence 2588877777778999999998 799999999999999999987675 2355 7776 5677777777888999999999
Q ss_pred CCCCcEEEEEECCCCCceEEEeeeccCCCCCCCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCcc
Q 003878 472 FLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNIS 551 (789)
Q Consensus 472 ~~~P~~ly~~dl~tg~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~ 551 (789)
+++|+++|++|+. ++ .++++... +.+++..+..+++++++.|| ++|++++++|++..++++.|+||++|||++.+
T Consensus 417 ~~~P~~~~~~d~~-~~--~~~l~~~~-~~~~~~~~~~e~v~~~s~DG-~~i~~~l~~P~~~~~~~~~P~vl~~HGG~~~~ 491 (711)
T 4hvt_A 417 SIVPPTIYLWVKT-HE--LKIIRKAL-YSFDSENYVLEQKEATSFDG-VKIPYFLVYKKGIKFDGKNPTLLEAYGGFQVI 491 (711)
T ss_dssp SSSCCEEEEECTT-SC--EEEEECCS-SCCCGGGEEEEEEEEECTTS-CEEEEEEEEETTCCCSSCCCEEEECCCCTTCC
T ss_pred CCCCCEEEEEeCC-Cc--EEEEecCC-cccCcccCeeEEEEEECCCC-eEEEEEEEecCCCCCCCCccEEEEECCCCCCC
Confidence 9999999999998 63 67777643 45777788899999999999 99999999999876778999999999999999
Q ss_pred CCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHH
Q 003878 552 VTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLL 631 (789)
Q Consensus 552 ~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l 631 (789)
..+.|+..+.+.+.++||+|+++|+||+|++|++|+..+...++.+.++|+++++++|++++++|++||+|+|+|+||++
T Consensus 492 ~~~~~~~~~~q~la~~Gy~Vv~~d~RGsg~~G~~~~~~~~~~~~~~~~~D~~aav~~L~~~~~~d~~rI~i~G~S~GG~l 571 (711)
T 4hvt_A 492 NAPYFSRIKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAVSEELIKQNITSPEYLGIKGGSNGGLL 571 (711)
T ss_dssp CCCCCCHHHHHHTGGGTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHH
T ss_pred CCCcccHHHHHHHHHCCCEEEEEeCCCCCCcchhHHHhhhhccCcCcHHHHHHHHHHHHHcCCCCcccEEEEeECHHHHH
Confidence 99999987654444599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEE
Q 003878 632 VGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLL 711 (789)
Q Consensus 632 ~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li 711 (789)
++++++++|++|+|+|+.+|++|+..+..+..+..|..+||+|.+++.++.+.++||+++++++ ..+||+||
T Consensus 572 a~~~a~~~pd~f~a~V~~~pv~D~~~~~~~~~~~~~~~~~G~p~~~~~~~~l~~~SP~~~v~~i--------~~~pPvLi 643 (711)
T 4hvt_A 572 VSVAMTQRPELFGAVACEVPILDMIRYKEFGAGHSWVTEYGDPEIPNDLLHIKKYAPLENLSLT--------QKYPTVLI 643 (711)
T ss_dssp HHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHHCCTTSHHHHHHHHHHCGGGSCCTT--------SCCCEEEE
T ss_pred HHHHHHhCcCceEEEEEeCCccchhhhhccccchHHHHHhCCCcCHHHHHHHHHcCHHHHHhhc--------CCCCCEEE
Confidence 9999999999999999999999999988777777888999999888889999999999999986 45789999
Q ss_pred EecCCCCCCCcHHHHHHHHHH-HHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCCC
Q 003878 712 LTADHDDRVVPLHSLKLLATM-QYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASW 787 (789)
Q Consensus 712 ~~g~~D~~V~~~~~~~~~~~L-~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~ 787 (789)
+||++|++||++++.+++++| ++. |.|+++++++++||++.....+..+..+.+++||.++||..+
T Consensus 644 i~G~~D~~Vp~~~s~~~~~aL~~~~----------g~pv~l~~~p~~gHg~~~~~~~~~~~~~~i~~FL~~~Lg~~i 710 (711)
T 4hvt_A 644 TDSVLDQRVHPWHGRIFEYVLAQNP----------NTKTYFLESKDSGHGSGSDLKESANYFINLYTFFANALKLKI 710 (711)
T ss_dssp EEETTCCSSCTHHHHHHHHHHTTCT----------TCCEEEEEESSCCSSSCSSHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred EecCCCCcCChHHHHHHHHHHHHHc----------CCCEEEEEECCCCCcCcCCcchHHHHHHHHHHHHHHHhCCcc
Confidence 999999999999999999999 987 899999999999999987777778889999999999999875
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-50 Score=480.97 Aligned_cols=593 Identities=14% Similarity=0.083 Sum_probs=427.3
Q ss_pred CCCCCceEeCCEEEEEEEc-CCCCeeEEEEecCCCCCceEEeccCC--CCCCCcEEEEeEEe--CCCCcE-EEEEEecCC
Q 003878 81 PRYDAPFKRGNKYFYFHNT-GLQPQSVLYVQDSLDAKAKVLLDPNT--LSDDGTAALIKVSV--SEDAKY-LAYALSYSG 154 (789)
Q Consensus 81 ~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~d~~~--~~~~~~~~~~~~~~--SpDg~~-la~~~~~~g 154 (789)
..+..|...|+++||.... ..+....||++. .+++.+.|+.... .+..+.+.-..+.+ ||||++ |||+.+.
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~-- 100 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRR-ADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG-- 100 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEEC-TTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT--
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEEC-CCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECC--
Confidence 3566677789999998874 234467799873 3455454443321 11100011113333 599999 9987653
Q ss_pred ceEEEEEEEEcC--C-CceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeee
Q 003878 155 SDWATIKLMRIE--D-QIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSV 231 (789)
Q Consensus 155 ~~~~~i~v~dl~--t-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~ 231 (789)
..+||++|+. + ++... +.... ......
T Consensus 101 --~~~l~~~~~~~~g~~~~~~--l~~~~-----------------~~~~~~----------------------------- 130 (662)
T 3azo_A 101 --DQRLYAFEPDAPGGAVPRP--LTPVS-----------------AVGGGL----------------------------- 130 (662)
T ss_dssp --TCCEEEECTTSTTCCCCEE--CSCCC-----------------CSTTCE-----------------------------
T ss_pred --CCeEEEEcCCCCCCCCCEe--ccCCc-----------------cCCCCc-----------------------------
Confidence 3479999987 4 54332 22210 000000
Q ss_pred ecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCC----CCcEEEEecCCCCeeEEEEEE
Q 003878 232 VSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ----SEDILCWKDPEHPKYIFSGHV 307 (789)
Q Consensus 232 ~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~----~~~~~~~~~~~~~~~~~~~~~ 307 (789)
...+++|||||+.|+|++.+.... .......+|+++++.+.. .+...+.+ .+......+.|
T Consensus 131 ----~~~~~~~spDg~~l~~~~~~~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~ 195 (662)
T 3azo_A 131 ----RWADPVLLPERGEVWCMAEEFTGE---------GPSDVRRFLAAVPLDGSAAADRSAVRELSD--DAHRFVTGPRL 195 (662)
T ss_dssp ----EEEEEEEETTTTEEEEEEEEECSS---------STTCEEEEEEEEETTSTTTTCGGGSEESSC--SCSSEECCCEE
T ss_pred ----cccCcEECCCCCEEEEEEecccCC---------CCCCceeEEEEEECCCCccccCCceeEEEe--cCCCcccCceE
Confidence 247899999999999997642100 001344679999998721 22333330 12234557899
Q ss_pred ecCCcEEEEEEEcCCC---CceEEEEEECC-CCCCCcccccccCCCCccEeeecc--ccceeEEEecCCCEEEEEECCCC
Q 003878 308 TEDGQYLVMCIEENCD---PVNKVYYCDLS-ALPEGLEGFKKRDGLLPFVKLIDG--FDAQYEVIANDDTVFTFLTNKDA 381 (789)
Q Consensus 308 SpDG~~l~~~~~~~~~---~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~s~dG~~l~~~tn~~~ 381 (789)
||||++|++.+.+... ...+||++|++ ++. ......+..+ .....+.|+|||+ +++.++.+
T Consensus 196 SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~-----------~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~- 262 (662)
T 3azo_A 196 SPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR-----------FADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRT- 262 (662)
T ss_dssp CTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC-----------EEEEEEEEEETTBCEEEEEECTTSC-EEEEECTT-
T ss_pred CCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc-----------ccccEEeCCCCCceEcceEECCCCe-EEEEECCC-
Confidence 9999999998865421 13789999998 431 0012334332 2223356999999 88888875
Q ss_pred CCceEEEEECCCCCCeEEeccCCCCce-------eeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEE
Q 003878 382 PKYKIIRVDLKEPNDWFEVIPEAERDV-------LESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVN 454 (789)
Q Consensus 382 ~~~~L~~~dl~~~~~~~~l~~~~~~~~-------i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~ 454 (789)
...+|+++|+++++ ++.+++...... +..+++++++++++.... +..+|+++|+++|+. +.|+.+.+.+.
T Consensus 263 ~~~~l~~~~~~~~~-~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~-~~l~~~~~~~~ 339 (662)
T 3azo_A 263 GWWNLHRVDPATGA-ATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGEL-VDAAGPWTEWA 339 (662)
T ss_dssp SSCEEEEECTTTCC-EEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEE-EECCSSCCEEE
T ss_pred CCeEEEEEECCCCc-eeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcE-EEecCCCCeEE
Confidence 45799999997776 677766432211 456777776788888888 888999999986664 77776666665
Q ss_pred EeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeeeccCCCCCCCCC-cEEEEEEecCCCceEEEEEEEecCCCC
Q 003878 455 AISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEF-HVHQVFVPSKDGSTKIPMFIVSKKNIK 533 (789)
Q Consensus 455 ~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~~~~~~~~~~~~-~~~~~~~~s~dg~~~i~~~l~~p~~~~ 533 (789)
.+. +++++.+++..++...|.++|++|+.+++ .+.++....+.+.+..+ ..+.+.+++.|| .+|+++++.|++..
T Consensus 340 ~~~-s~~~~~~~~~~~~~~~~~~i~~~d~~~g~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg-~~i~~~~~~P~~~~ 415 (662)
T 3azo_A 340 ATL-TVSGTRAVGVAASPRTAYEVVELDTVTGR--ARTIGARHTDPVDPAYYPEPQIRTFTAPDG-REIHAHIYPPHSPD 415 (662)
T ss_dssp EEE-EEETTEEEEEEEETTEEEEEEEEETTTCC--EEEEESCCCCSSCGGGSCCCEEEEEECTTS-CEEEEEEECCCCSS
T ss_pred EEE-ecCCCEEEEEEcCCCCCCEEEEEECCCCc--eEEeecCCcccCCccccCcceEEEEEcCCC-CEEEEEEECCCCcc
Confidence 442 56788899999999999999999999885 66666544334554445 368889999999 99999999999754
Q ss_pred ----CCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHH
Q 003878 534 ----LDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYL 609 (789)
Q Consensus 534 ----~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L 609 (789)
++++.|+||++||+++......|.... ..|+++||+|+++|+||++++|+.|.......++...++|+.+++++|
T Consensus 416 ~~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~-~~l~~~G~~v~~~d~rG~~~~G~~~~~~~~~~~~~~~~~d~~~~~~~l 494 (662)
T 3azo_A 416 FTGPADELPPYVVMAHGGPTSRVPAVLDLDV-AYFTSRGIGVADVNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATAL 494 (662)
T ss_dssp EECCTTCCCCEEEEECSSSSSCCCCSCCHHH-HHHHTTTCEEEEEECTTCSSSCHHHHHTTTTTTTTHHHHHHHHHHHHH
T ss_pred ccCCCCCCccEEEEECCCCCccCcccchHHH-HHHHhCCCEEEEECCCCCCCccHHHHHhhccccccccHHHHHHHHHHH
Confidence 457889999999999887777787654 455559999999999999999999998876677778899999999999
Q ss_pred HHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc-ccC--Cccch-hhcCCC-CcHHHHHHHH
Q 003878 610 ISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK-FTI--GHAWV-SDFGCS-EEEEEFYWLI 684 (789)
Q Consensus 610 ~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~-~~~--~~~~~-~e~g~p-~~~~~~~~l~ 684 (789)
++++++|++||+|+|+|+||+++++++.+ |++|+|+|+.+|+.|+..+.. ... ...+. ..+|.+ ++ .+.+.
T Consensus 495 ~~~~~~~~~~i~l~G~S~GG~~a~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 570 (662)
T 3azo_A 495 AEEGTADRARLAVRGGSAGGWTAASSLVS-TDVYACGTVLYPVLDLLGWADGGTHDFESRYLDFLIGSFEEF---PERYR 570 (662)
T ss_dssp HHTTSSCTTCEEEEEETHHHHHHHHHHHH-CCCCSEEEEESCCCCHHHHHTTCSCGGGTTHHHHHTCCTTTC---HHHHH
T ss_pred HHcCCcChhhEEEEEECHHHHHHHHHHhC-cCceEEEEecCCccCHHHHhcccccchhhHhHHHHhCCCccc---hhHHH
Confidence 99999999999999999999999999887 999999999999999865432 111 11111 124543 33 34467
Q ss_pred hcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCc
Q 003878 685 KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP 764 (789)
Q Consensus 685 ~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~ 764 (789)
+++|+.++.++ .+|+|++||++|.+||++++.+++++|++. |.++++++++++||++...
T Consensus 571 ~~sp~~~~~~~----------~~P~lii~G~~D~~vp~~~~~~~~~~l~~~----------g~~~~~~~~~~~gH~~~~~ 630 (662)
T 3azo_A 571 DRAPLTRADRV----------RVPFLLLQGLEDPVCPPEQCDRFLEAVAGC----------GVPHAYLSFEGEGHGFRRK 630 (662)
T ss_dssp HTCGGGGGGGC----------CSCEEEEEETTCSSSCTHHHHHHHHHHTTS----------CCCEEEEEETTCCSSCCSH
T ss_pred hhChHhHhccC----------CCCEEEEeeCCCCCCCHHHHHHHHHHHHHc----------CCCEEEEEECCCCCCCCCh
Confidence 88999998886 689999999999999999999999999987 8999999999999998654
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCC
Q 003878 765 TQKMIDEAADRYGFMAKMLGASW 787 (789)
Q Consensus 765 ~~~~~~~~~~~~~fl~~~l~~~~ 787 (789)
.. ..+..+.+++||.++|+...
T Consensus 631 ~~-~~~~~~~~~~fl~~~l~~~~ 652 (662)
T 3azo_A 631 ET-MVRALEAELSLYAQVFGVEV 652 (662)
T ss_dssp HH-HHHHHHHHHHHHHHHTTCCC
T ss_pred HH-HHHHHHHHHHHHHHHhCCCC
Confidence 44 46788999999999998764
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=468.43 Aligned_cols=610 Identities=12% Similarity=0.137 Sum_probs=423.1
Q ss_pred EEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecC----CceEEEEEEEEcCCCceeccccccccccc
Q 003878 107 LYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYS----GSDWATIKLMRIEDQIVEADALSWVCFCF 182 (789)
Q Consensus 107 ~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~----g~~~~~i~v~dl~tg~~~~~~~~~~~~~~ 182 (789)
|++.+..+++.++++....+..- .....++++||||++|||+.+.. -+...++++||+++|+... +...
T Consensus 38 i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~--l~~~---- 110 (740)
T 4a5s_A 38 ILVFNAEYGNSSVFLENSTFDEF-GHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT--EERI---- 110 (740)
T ss_dssp EEEEETTTCCEEEEECTTTTTTC-CSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC--SSCC----
T ss_pred EEEEECCCCceEEEEechhhhhh-cccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE--cccC----
Confidence 66656556776777776654311 11123478999999999987631 1234789999999997654 2221
Q ss_pred ccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeec------ccc--------------------
Q 003878 183 SHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVS------QFK-------------------- 236 (789)
Q Consensus 183 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~------~~~-------------------- 236 (789)
. ....++.++|+|+ +++|.+|. +||.++. ++.
T Consensus 111 ---~----~~~~~~~~SPdG~-----------~la~~~~~----~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee 168 (740)
T 4a5s_A 111 ---P----NNTQWVTWSPVGH-----------KLAYVWNN----DIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE 168 (740)
T ss_dssp ---C----TTEEEEEECSSTT-----------CEEEEETT----EEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred ---C----CcceeeEECCCCC-----------EEEEEECC----eEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence 0 1245688899998 55555442 3333322 111
Q ss_pred ----cceEEEEeCCcEEEEEEccCCCCC-CCC---CCC--c---------cc--cCCcccEEEEEECCC---CCCCcEEE
Q 003878 237 ----FSSIAWTHDSKGFFYSRYPAPKEG-KDM---DAG--T---------ET--DSNLYHEFYYHFLGT---KQSEDILC 292 (789)
Q Consensus 237 ----~~~~~wspDg~~i~y~~~~~~~~~-~~~---~~~--~---------~~--~~~~~~~i~~~~lg~---~~~~~~~~ 292 (789)
..+++|||||+.|+|.+.+..... ..+ ... . .. ..+...+|+++++.+ +.......
T Consensus 169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~ 248 (740)
T 4a5s_A 169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQ 248 (740)
T ss_dssp TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEE
T ss_pred hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEE
Confidence 124889999999999987654211 000 000 0 00 011123688899877 52111122
Q ss_pred EecC----CCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEee----ecccc----
Q 003878 293 WKDP----EHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL----IDGFD---- 360 (789)
Q Consensus 293 ~~~~----~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l----~~~~~---- 360 (789)
...+ .+..++..++|||||+.+++...+. .....|+++|++++..... ......+ ...+.
T Consensus 249 l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~-~~~~~i~~~d~~tg~~~~~-------~~~~~~l~~~~~~~~v~~~~ 320 (740)
T 4a5s_A 249 ITAPASMLIGDHYLCDVTWATQERISLQWLRRI-QNYSVMDICDYDESSGRWN-------CLVARQHIEMSTTGWVGRFR 320 (740)
T ss_dssp ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESS-TTEEEEEEEEEETTTTEEE-------ECGGGCEEEECSSSCSSSSS
T ss_pred ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCC-CCEEEEEEEECCCCccccc-------eeEEEEeeeccCCceEccCc
Confidence 2221 1456778899999999887776543 3356899999988630000 0001111 11111
Q ss_pred ceeEEEecCCCEEE-EEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEe----CCeEEEEEE
Q 003878 361 AQYEVIANDDTVFT-FLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLS----DVKYVLQIR 435 (789)
Q Consensus 361 ~~~~~~s~dG~~l~-~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~----~g~~~L~~~ 435 (789)
...+.|+|||+.|+ +.++++ +..+|+++++++++ .+.|+... .....-+.+. ++.+++.... .+..+|+.+
T Consensus 321 ~~~p~fspDG~~l~~~~s~~~-G~~~l~~~~~~~~~-~~~lT~g~-~~v~~~~~~d-~~~i~f~~~~~~~~~~~~~ly~v 396 (740)
T 4a5s_A 321 PSEPHFTLDGNSFYKIISNEE-GYRHICYFQIDKKD-CTFITKGT-WEVIGIEALT-SDYLYYISNEYKGMPGGRNLYKI 396 (740)
T ss_dssp CCCCEECTTSSEEEEEEECTT-SCEEEEEEETTCSS-CEESCCSS-SCEEEEEEEC-SSEEEEEESCGGGCTTCBEEEEE
T ss_pred CCCceEcCCCCEEEEEEEcCC-CceEEEEEECCCCc-eEecccCC-EEEEEEEEEe-CCEEEEEEecCCCCCceeEEEEE
Confidence 12456999999988 666664 56899999998876 55665443 3333333454 4788888776 345699999
Q ss_pred ECCCCceeeecccC----CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeeecc-C-CCCCCCCCc-E
Q 003878 436 DLKNGSLLHQLPIE----IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETI-I-PGFDRSEFH-V 508 (789)
Q Consensus 436 dl~tG~~~~~l~~~----~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~~~-~-~~~~~~~~~-~ 508 (789)
++++++..+.|+.. .+.+..++++++++.+++.++++. |+.+++++..+++ ...++.... . +.+....+. .
T Consensus 397 ~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~-~p~~~l~~~~~~~-~~~~l~~n~~~~~~~~~~~~~~~ 474 (740)
T 4a5s_A 397 QLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG-LPLYTLHSSVNDK-GLRVLEDNSALDKMLQNVQMPSK 474 (740)
T ss_dssp ETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS-SCEEEEEETTTTE-EEEEEECCHHHHHHHTTEECCEE
T ss_pred ECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCC-CCEEEEEECCCCc-EEEEeccChhhhhhhhhccCCcc
Confidence 99855443356532 245667889999999999999987 8899999998774 233433211 0 112222333 4
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccC-CCCCCHHHHH-HHHcCCeEEEEEeecCCCCCChhH
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV-TPSFSVSRTI-LMRHLGAVFCIANIRGGGEYGEEW 586 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~-~~~~~~~~~~-~l~~~G~~v~~~~~RG~g~~g~~~ 586 (789)
+.+.+ +.|| .+|+++++.|++..+.++.|+||++|||++... ...|...+.. +++++||+|+++|+||+|++|..|
T Consensus 475 ~~~~~-~~dg-~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~~~l~~~~G~~Vv~~D~rG~g~~g~~~ 552 (740)
T 4a5s_A 475 KLDFI-ILNE-TKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKI 552 (740)
T ss_dssp EEEEE-EETT-EEEEEEEEECTTCCTTSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSSSCHHH
T ss_pred EEEEE-ccCC-eEEEEEEEeCCCCCCCCCccEEEEECCCCcccccccccCcCHHHHHHhcCCeEEEEEcCCCCCcCChhH
Confidence 55666 7799 999999999998777789999999999987743 3344423333 443599999999999999999999
Q ss_pred HhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCcc
Q 003878 587 HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHA 666 (789)
Q Consensus 587 ~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~ 666 (789)
........+...++|+.+++++|++++++|++||+|+|+|+||+++++++.++|++|+|+|+.+|+.|+..+.. .
T Consensus 553 ~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~a~~~p~~~~~~v~~~p~~~~~~~~~-----~ 627 (740)
T 4a5s_A 553 MHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDS-----V 627 (740)
T ss_dssp HGGGTTCTTSHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBH-----H
T ss_pred HHHHHhhhCcccHHHHHHHHHHHHhcCCcCCccEEEEEECHHHHHHHHHHHhCCCceeEEEEcCCccchHHhhh-----H
Confidence 99888888888899999999999999999999999999999999999999999999999999999999865532 2
Q ss_pred chhh-cCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCC
Q 003878 667 WVSD-FGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQ 745 (789)
Q Consensus 667 ~~~e-~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~ 745 (789)
|... .|.|...+..+.+...+|..+++++ ..+|+|++||++|.+||+.++.+++++|+++
T Consensus 628 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~i---------~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~---------- 688 (740)
T 4a5s_A 628 YTERYMGLPTPEDNLDHYRNSTVMSRAENF---------KQVEYLLIHGTADDNVHFQQSAQISKALVDV---------- 688 (740)
T ss_dssp HHHHHHCCSSTTTTHHHHHHSCSGGGGGGG---------GGSEEEEEEETTCSSSCTHHHHHHHHHHHHT----------
T ss_pred HHHHHcCCCCccccHHHHHhCCHHHHHhcC---------CCCcEEEEEcCCCCccCHHHHHHHHHHHHHC----------
Confidence 2233 3655222333456788999988886 2359999999999999999999999999998
Q ss_pred CCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCC
Q 003878 746 TNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 746 ~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
+.++++.+++++||++..... ..+....+.+||.++|+..
T Consensus 689 g~~~~~~~~~~~~H~~~~~~~-~~~~~~~i~~fl~~~l~~~ 728 (740)
T 4a5s_A 689 GVDFQAMWYTDEDHGIASSTA-HQHIYTHMSHFIKQCFSLP 728 (740)
T ss_dssp TCCCEEEEETTCCTTCCSHHH-HHHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEECCCCCcCCCCcc-HHHHHHHHHHHHHHHcCCC
Confidence 889999999999999865444 3678889999999999764
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=449.50 Aligned_cols=607 Identities=15% Similarity=0.154 Sum_probs=427.3
Q ss_pred eEeCCEEEEEEE-cCCCCeeEEEEecCCCCCceEEeccCCCCC-------C-----------CcEEEEeEEeCCCCcEEE
Q 003878 87 FKRGNKYFYFHN-TGLQPQSVLYVQDSLDAKAKVLLDPNTLSD-------D-----------GTAALIKVSVSEDAKYLA 147 (789)
Q Consensus 87 ~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~-------~-----------~~~~~~~~~~SpDg~~la 147 (789)
.++|.+++|... +++.....||+.+..+++.+.+++...... + +...+..++|||||++|+
T Consensus 45 SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~ 124 (741)
T 2ecf_A 45 APDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLL 124 (741)
T ss_dssp CTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEE
T ss_pred ecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEE
Confidence 458889999887 554455678888876777777776543321 0 002356789999999999
Q ss_pred EEEecCCceEEEEEEEEcCCC---ceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeecccc
Q 003878 148 YALSYSGSDWATIKLMRIEDQ---IVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKST 224 (789)
Q Consensus 148 ~~~~~~g~~~~~i~v~dl~tg---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g 224 (789)
++.. .+|++||+.++ +... +... . .-..++.+.|+++ +++|.++.
T Consensus 125 ~~~~------~~i~~~d~~~~~~~~~~~--l~~~-------~----~~~~~~~~SPDG~-----------~la~~~~~-- 172 (741)
T 2ecf_A 125 FPLG------GELYLYDLKQEGKAAVRQ--LTHG-------E----GFATDAKLSPKGG-----------FVSFIRGR-- 172 (741)
T ss_dssp EEET------TEEEEEESSSCSTTSCCB--CCCS-------S----SCEEEEEECTTSS-----------EEEEEETT--
T ss_pred EEeC------CcEEEEECCCCCcceEEE--cccC-------C----cccccccCCCCCC-----------EEEEEeCC--
Confidence 9875 48999999998 4432 2111 0 1134566789997 56666643
Q ss_pred ceeeeeeec------ccc----------------------cceEEEEeCCcEEEEEEccCCCCCCCCC------C-----
Q 003878 225 IYSFWSVVS------QFK----------------------FSSIAWTHDSKGFFYSRYPAPKEGKDMD------A----- 265 (789)
Q Consensus 225 ~~~l~~~~~------~~~----------------------~~~~~wspDg~~i~y~~~~~~~~~~~~~------~----- 265 (789)
+||.++. ++. ..+++|||||+.|+|...+...... +. .
T Consensus 173 --~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~-~~~~~~~p~~~~~~ 249 (741)
T 2ecf_A 173 --NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPV-QKRYEVYADRTDVI 249 (741)
T ss_dssp --EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCE-EEEEEECSSCEEEE
T ss_pred --cEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCce-EecCCCCCCcccce
Confidence 3444433 110 2569999999999998765421100 00 0
Q ss_pred ----CccccCCcccEEEEEECCC-CCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCc
Q 003878 266 ----GTETDSNLYHEFYYHFLGT-KQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGL 340 (789)
Q Consensus 266 ----~~~~~~~~~~~i~~~~lg~-~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~ 340 (789)
....+.....+|+++++.+ +.. ..+.....+...+..+.| |||++|++...++.....+|+++|++++.
T Consensus 250 ~~~~~~~g~~~~~~~l~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~--- 323 (741)
T 2ecf_A 250 EQRYPAAGDANVQVKLGVISPAEQAQT--QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ--- 323 (741)
T ss_dssp EEECCBTTSCCCEEEEEEECSSTTCCC--EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC---
T ss_pred EeecCCCCCCCCeeEEEEEECCCCCce--EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc---
Confidence 0000011223688888876 432 222222123456778999 99999999887555556889999998853
Q ss_pred ccccccCCCCccEeeecccc------ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeE-E
Q 003878 341 EGFKKRDGLLPFVKLIDGFD------AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESA-T 413 (789)
Q Consensus 341 ~~~~~~~~~~~~~~l~~~~~------~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v-~ 413 (789)
...+..... .....|+|||+ +++.++.+ +..+|+.+++++. .+.+..+. ..+..+ .
T Consensus 324 -----------~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~-g~~~l~~~~~~~~--~~~l~~~~--~~v~~~~~ 386 (741)
T 2ecf_A 324 -----------QRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERT-GFQHLYRIDSKGK--AAALTHGN--WSVDELLA 386 (741)
T ss_dssp -----------EEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTT-SSCEEEEECSSSC--EEESCCSS--SCEEEEEE
T ss_pred -----------eEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCC-CccEEEEEcCCCC--eeeeeecc--eEEEeEeE
Confidence 112221110 12345999999 66666654 4578999997654 56665543 334455 4
Q ss_pred EecCC-EEEEEEEeCC--eEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceE
Q 003878 414 AVNLN-QMIVSYLSDV--KYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEM 490 (789)
Q Consensus 414 ~~~~~-~lv~~~~~~g--~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~ 490 (789)
+++++ .+++....++ ..+||.++++ |+..+.|+. ...+..+++++|++.+++.+++...|+.+|+++..++ ..
T Consensus 387 ~s~dg~~l~~~~~~~~~~~~~l~~~~~~-g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~--~~ 462 (741)
T 2ecf_A 387 VDEKAGLAYFRAGIESARESQIYAVPLQ-GGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE--KI 462 (741)
T ss_dssp EETTTTEEEEEECSSCTTCBEEEEEETT-CCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC--EE
T ss_pred EeCCCCEEEEEEeCCCCceEEEEEEEcC-CCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC--eE
Confidence 77754 5777776665 4567777775 554466665 3345578899999999999999999999999998665 34
Q ss_pred EEeeeccC---C-CCCCC--CC-cEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCCH----
Q 003878 491 KIFRETII---P-GFDRS--EF-HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSV---- 558 (789)
Q Consensus 491 ~~l~~~~~---~-~~~~~--~~-~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~~---- 558 (789)
+.+..... . .+.+. .+ ..+.+.+++.||..+|+++++.|++..+.++.|+||++||+++.... ..|..
T Consensus 463 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~P~~~~~~~~~p~vv~~hG~~~~~~~~~~~~~~~~~ 542 (741)
T 2ecf_A 463 ATLVENDLADPKHPYARYREAQRPVEFGTLTAADGKTPLNYSVIKPAGFDPAKRYPVAVYVYGGPASQTVTDSWPGRGDH 542 (741)
T ss_dssp ECSSCCCSSSTTSTTHHHHTTCCCEEEEEEECTTSSCEEEEEEECCSSCCTTSCEEEEEECCCSTTCCSCSSCCCCSHHH
T ss_pred EEeccCcccccccchhhhhccCCCcEEEEEEcCCCCEEEEEEEEeCCCCCCCCCcCEEEEEcCCCCcccccccccccchh
Confidence 44443211 0 12211 34 57889999887735899999999876556778999999999876532 33431
Q ss_pred HHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh
Q 003878 559 SRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ 638 (789)
Q Consensus 559 ~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~ 638 (789)
.....|+++||+|+++|+||.|++|..|........+...++|+.+++++|.+++.+|++||+++|+|+||++++.++.+
T Consensus 543 ~~~~~l~~~G~~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~ 622 (741)
T 2ecf_A 543 LFNQYLAQQGYVVFSLDNRGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAK 622 (741)
T ss_dssp HHHHHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCEEEEEecCCCCCCChhhhHHHhhhcccccHHHHHHHHHHHHhcCCCChhhEEEEEEChHHHHHHHHHHh
Confidence 24456656999999999999999999998877667777789999999999999988999999999999999999999999
Q ss_pred CCCceeEEEecCCcccccccccccCCccchhh-cCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCC
Q 003878 639 RPDLFGCALAHVGVMDMLRYHKFTIGHAWVSD-FGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 717 (789)
Q Consensus 639 ~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e-~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D 717 (789)
+|++|+++|+.+|+.++..+.. .|... .+.|... .+.+...+|+.++.++ .+|+|++||++|
T Consensus 623 ~p~~~~~~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i----------~~P~lii~G~~D 685 (741)
T 2ecf_A 623 ASDSYACGVAGAPVTDWGLYDS-----HYTERYMDLPARN--DAGYREARVLTHIEGL----------RSPLLLIHGMAD 685 (741)
T ss_dssp CTTTCSEEEEESCCCCGGGSBH-----HHHHHHHCCTGGG--HHHHHHHCSGGGGGGC----------CSCEEEEEETTC
T ss_pred CCCceEEEEEcCCCcchhhhcc-----ccchhhcCCcccC--hhhhhhcCHHHHHhhC----------CCCEEEEccCCC
Confidence 9999999999999998754321 12222 3555321 2335678999888876 689999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 718 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 718 ~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
.+||+.++.+++++|+.. +.++++.+++++||++..... .+....+.+||.++|+
T Consensus 686 ~~v~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~H~~~~~~~--~~~~~~i~~fl~~~l~ 740 (741)
T 2ecf_A 686 DNVLFTNSTSLMSALQKR----------GQPFELMTYPGAKHGLSGADA--LHRYRVAEAFLGRCLK 740 (741)
T ss_dssp SSSCTHHHHHHHHHHHHT----------TCCCEEEEETTCCSSCCHHHH--HHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHC----------CCceEEEEECCCCCCCCCCch--hHHHHHHHHHHHHhcC
Confidence 999999999999999987 889999999999999864333 5677889999999986
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-45 Score=438.85 Aligned_cols=606 Identities=15% Similarity=0.106 Sum_probs=414.7
Q ss_pred CCCCceEeCCEEEEEEEcCCCCeeEEEEecCCCCCc--eEEeccCCC----CCC-Cc-----EEEEeEEeCCCCcEEEEE
Q 003878 82 RYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKA--KVLLDPNTL----SDD-GT-----AALIKVSVSEDAKYLAYA 149 (789)
Q Consensus 82 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~d~~~~----~~~-~~-----~~~~~~~~SpDg~~la~~ 149 (789)
+...+.+.|+.|+|...++ | +.+..+++. ++|++.+.+ +.. +. ..+..+++||| ++++|+
T Consensus 27 ~~~~~~w~g~~~~~~~~~~------i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~ 98 (706)
T 2z3z_A 27 YVVGLQWMGDNYVFIEGDD------L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF 98 (706)
T ss_dssp -CTTCEEETTEEEEEETTE------E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE
T ss_pred cCCCCcCcCCeEEEEeCCc------E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE
Confidence 3444555588877754321 4 555556777 888888754 111 11 34778999999 889988
Q ss_pred EecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeee
Q 003878 150 LSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFW 229 (789)
Q Consensus 150 ~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~ 229 (789)
.+ .+|++||+.+++......... -..++.+.|+++.+.+.+. +...+|
T Consensus 99 ~~------~~i~~~d~~~~~~~~l~~~~~-------------~~~~~~~SpdG~~la~~~~-------------~~i~v~ 146 (706)
T 2z3z_A 99 TQ------GGLVGFDMLARKVTYLFDTNE-------------ETASLDFSPVGDRVAYVRN-------------HNLYIA 146 (706)
T ss_dssp ET------TEEEEEETTTTEEEEEECCTT-------------CCTTCEECTTSSEEEEEET-------------TEEEEE
T ss_pred EC------CEEEEEECCCCceEEccCCcc-------------cccCCcCCCCCCEEEEEEC-------------CeEEEE
Confidence 54 489999999986543211110 1234667799974333322 223333
Q ss_pred eee------c--------ccc---------------cceEEEEeCCcEEEEEEccCCCCCC----CCCCC----------
Q 003878 230 SVV------S--------QFK---------------FSSIAWTHDSKGFFYSRYPAPKEGK----DMDAG---------- 266 (789)
Q Consensus 230 ~~~------~--------~~~---------------~~~~~wspDg~~i~y~~~~~~~~~~----~~~~~---------- 266 (789)
.+. . ... ..+++|||||+.|++.+.+...... +....
T Consensus 147 ~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~ 226 (706)
T 2z3z_A 147 RGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYP 226 (706)
T ss_dssp ECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCC
T ss_pred ecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCC
Confidence 321 1 001 2578999999999999854321100 00000
Q ss_pred ccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCccccccc
Q 003878 267 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR 346 (789)
Q Consensus 267 ~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~ 346 (789)
.........+|+++++.++.. ..+.....+...+..+.|||||++|++...++......|+++|++++.
T Consensus 227 ~~g~~~~~~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--------- 295 (706)
T 2z3z_A 227 MAGTPSHHVTVGIYHLATGKT--VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--------- 295 (706)
T ss_dssp BTTSCCCEEEEEEEETTTTEE--EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC---------
T ss_pred CCCCCCCeeEEEEEECCCCce--EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc---------
Confidence 000012345799999876532 222222223455678999999999999876655456789999998751
Q ss_pred CCCCccEeeeccccc------eeEEEec--CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeee-EEEecC
Q 003878 347 DGLLPFVKLIDGFDA------QYEVIAN--DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLES-ATAVNL 417 (789)
Q Consensus 347 ~~~~~~~~l~~~~~~------~~~~~s~--dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~-v~~~~~ 417 (789)
....+...... ....|+| ||+ +++.++.+ ...+|+.++++++. .+.+..+. ..+.. +.++++
T Consensus 296 ----~~~~~~~~~~~~~~~~~~~~~~sp~~dg~-~l~~~~~~-g~~~l~~~~~~~~~-~~~l~~~~--~~v~~~~~~spd 366 (706)
T 2z3z_A 296 ----FVRTLFVETDKHYVEPLHPLTFLPGSNNQ-FIWQSRRD-GWNHLYLYDTTGRL-IRQVTKGE--WEVTNFAGFDPK 366 (706)
T ss_dssp ----EEEEEEEEECSSCCCCCSCCEECTTCSSE-EEEEECTT-SSCEEEEEETTSCE-EEECCCSS--SCEEEEEEECTT
T ss_pred ----eeeEEEEccCCCeECccCCceeecCCCCE-EEEEEccC-CccEEEEEECCCCE-EEecCCCC--eEEEeeeEEcCC
Confidence 01122211010 1235899 987 44556554 46789999976553 55555443 23444 678875
Q ss_pred C-EEEEEEEeCC--eEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEee
Q 003878 418 N-QMIVSYLSDV--KYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFR 494 (789)
Q Consensus 418 ~-~lv~~~~~~g--~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~ 494 (789)
+ .+++....++ ..+|+.+++++|+. +.++. ...+..+++++|++.+++..++...|+.++++|+.+++ .+.+.
T Consensus 367 g~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~--~~~~~ 442 (706)
T 2z3z_A 367 GTRLYFESTEASPLERHFYCIDIKGGKT-KDLTP-ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS--HTLLE 442 (706)
T ss_dssp SSEEEEEESSSCTTCBEEEEEETTCCCC-EESCC-SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE--EEEEE
T ss_pred CCEEEEEecCCCCceEEEEEEEcCCCCc-eeccC-CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe--Eeecc
Confidence 4 5666665554 35899999987764 56653 33466789999999999999999999999999998883 44444
Q ss_pred eccCCCCCCCCC-cEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCCHH---HHHHHHcCCe
Q 003878 495 ETIIPGFDRSEF-HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVS---RTILMRHLGA 569 (789)
Q Consensus 495 ~~~~~~~~~~~~-~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~~~---~~~~l~~~G~ 569 (789)
... .+....+ ..+.+.+++.||..+|+++++.|++..++++.|+||++|||++.... ..|... +...|+++||
T Consensus 443 ~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~P~~~~~~~~~p~iv~~HGg~~~~~~~~~~~~~~~~~~~~la~~G~ 520 (706)
T 2z3z_A 443 AKN--PDTGYAMPEIRTGTIMAADGQTPLYYKLTMPLHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGY 520 (706)
T ss_dssp CC--------CCCCEEEEEEECTTSSSEEEEEEECCTTCCTTSCEEEEEECCCCTTCCCCCSCC----CCHHHHHHHTTC
T ss_pred ccc--hhhhcCCCCcEEEEEEcCCCCEEEEEEEEeCCCCCCCCCccEEEEecCCCCceeeccccccCchHHHHHHHhCCc
Confidence 321 1322223 46778888887635899999999987666789999999999876542 345543 4566666999
Q ss_pred EEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEec
Q 003878 570 VFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 649 (789)
Q Consensus 570 ~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~ 649 (789)
+|+++|+||.|++|..|........+...++|+.+++++|.+++.+|++|++|+|+|+||++++.++.++|++|+++|+.
T Consensus 521 ~v~~~d~rG~g~s~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~ 600 (706)
T 2z3z_A 521 AVFTVDSRGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAG 600 (706)
T ss_dssp EEEEECCTTCSSSCHHHHHTTTTCTTHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTTTEEEEEEE
T ss_pred EEEEEecCCCcccchhHHHHHhhccCCccHHHHHHHHHHHHhCCCCCchheEEEEEChHHHHHHHHHHhCCCcEEEEEEc
Confidence 99999999999999999887777777788999999999999998899999999999999999999999999999999999
Q ss_pred CCcccccccccccCCccchhh-cCCC-CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHH
Q 003878 650 VGVMDMLRYHKFTIGHAWVSD-FGCS-EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLK 727 (789)
Q Consensus 650 ~p~~d~~~~~~~~~~~~~~~e-~g~p-~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~ 727 (789)
+|+.++..+.. .|... .+.| .+++. +...+|...+.++ .+|+|++||++|.+||++++.+
T Consensus 601 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i----------~~P~lii~G~~D~~v~~~~~~~ 662 (706)
T 2z3z_A 601 GPVIDWNRYAI-----MYGERYFDAPQENPEG---YDAANLLKRAGDL----------KGRLMLIHGAIDPVVVWQHSLL 662 (706)
T ss_dssp SCCCCGGGSBH-----HHHHHHHCCTTTCHHH---HHHHCGGGGGGGC----------CSEEEEEEETTCSSSCTHHHHH
T ss_pred CCccchHHHHh-----hhhhhhcCCcccChhh---hhhCCHhHhHHhC----------CCCEEEEeeCCCCCCCHHHHHH
Confidence 99998754322 12222 3555 33333 4677898888876 6899999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 728 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 728 ~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
++++|+.. +.++++.+++++||++... ...+..+.+.+||.++|
T Consensus 663 ~~~~l~~~----------~~~~~~~~~~~~gH~~~~~--~~~~~~~~i~~fl~~~l 706 (706)
T 2z3z_A 663 FLDACVKA----------RTYPDYYVYPSHEHNVMGP--DRVHLYETITRYFTDHL 706 (706)
T ss_dssp HHHHHHHH----------TCCCEEEEETTCCSSCCTT--HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHC----------CCCeEEEEeCCCCCCCCcc--cHHHHHHHHHHHHHHhC
Confidence 99999988 8899999999999998755 33577889999999875
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-46 Score=446.79 Aligned_cols=604 Identities=13% Similarity=0.086 Sum_probs=410.8
Q ss_pred EEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCC----ceEEEEEEEEcCCCceec-cccccccc
Q 003878 106 VLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSG----SDWATIKLMRIEDQIVEA-DALSWVCF 180 (789)
Q Consensus 106 ~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g----~~~~~i~v~dl~tg~~~~-~~~~~~~~ 180 (789)
.|++.+..+++.+.+++....+. ..+..++|||||++|||+.+..+ +...+|++||+++|+.+. ..+...
T Consensus 37 ~i~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~-- 111 (719)
T 1z68_A 37 NIVLYNIETGQSYTILSNRTMKS---VNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRP-- 111 (719)
T ss_dssp CEEEEESSSCCEEEEECHHHHHT---TTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSS--
T ss_pred CEEEEEcCCCcEEEEEccccccc---cceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcc--
Confidence 37777766677778887654311 12467899999999999886432 335799999999997621 112111
Q ss_pred ccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeec----cc---------------------
Q 003878 181 CFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVS----QF--------------------- 235 (789)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~----~~--------------------- 235 (789)
..++.+.|+|+ .++|.++ +...+|.+.. ++
T Consensus 112 ------------~~~~~~SPDG~-----------~la~~~~--~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee 166 (719)
T 1z68_A 112 ------------IQYLCWSPVGS-----------KLAYVYQ--NNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEE 166 (719)
T ss_dssp ------------BCCEEECSSTT-----------CEEEEET--TEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHH
T ss_pred ------------cccceECCCCC-----------EEEEEEC--CeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeee
Confidence 23467789998 4455443 2223332211 00
Q ss_pred ---ccceEEEEeCCcEEEEEEccCCCCCC----CCCCC-----------ccccCCcccEEEEEECCCCCCC-cEEEEe--
Q 003878 236 ---KFSSIAWTHDSKGFFYSRYPAPKEGK----DMDAG-----------TETDSNLYHEFYYHFLGTKQSE-DILCWK-- 294 (789)
Q Consensus 236 ---~~~~~~wspDg~~i~y~~~~~~~~~~----~~~~~-----------~~~~~~~~~~i~~~~lg~~~~~-~~~~~~-- 294 (789)
...+++|||||+.|+|.+.+...... ..... ..-......+|+++++.++... ...+..
T Consensus 167 ~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 246 (719)
T 1z68_A 167 MLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA 246 (719)
T ss_dssp TTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH
T ss_pred cccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc
Confidence 01479999999999998875421100 00000 0000112236888888764321 011100
Q ss_pred -cCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEE----CCCCCCCcccccccCCCCccE----eeeccccc----
Q 003878 295 -DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCD----LSALPEGLEGFKKRDGLLPFV----KLIDGFDA---- 361 (789)
Q Consensus 295 -~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d----~~~g~~~~~~~~~~~~~~~~~----~l~~~~~~---- 361 (789)
...+..++..++|||||+.++. ..++.....+||++| ++++.. .... ....+...
T Consensus 247 ~~~~~~~~~~~~~~SpD~~~~~~-~~~~~~~~~~l~~~d~~~~~~~g~~-----------~~~~~~~~~~~~~~~~~~~~ 314 (719)
T 1z68_A 247 MIASSDYYFSWLTWVTDERVCLQ-WLKRVQNVSVLSICDFREDWQTWDC-----------PKTQEHIEESRTGWAGGFFV 314 (719)
T ss_dssp HHHTSCEEEEEEEESSSSEEEEE-EEESSTTEEEEEEEEECSSSSSEEC-----------CGGGEEEEECSSSCSSSSSC
T ss_pred cCCCCcceEEEeEEeCCCeEEEE-EeccccCeEEEEEEcccCCCCCCce-----------EEEEecccccCCceEccccC
Confidence 0123456678999999765544 433334457899999 766421 1111 00011111
Q ss_pred eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEe----CCeEEEEEEEC
Q 003878 362 QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLS----DVKYVLQIRDL 437 (789)
Q Consensus 362 ~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~----~g~~~L~~~dl 437 (789)
..+.|+|||+.|++.+....+..+|+++++++++ .+.+..+. ..+.++.+.+++.+++.... .+..+|+.+++
T Consensus 315 ~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~--~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 315 STPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGK--WEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp CCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSS--SCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred CccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCc--eEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeC
Confidence 1356999999988865544457899999998876 56665443 22344433354677777665 46678999998
Q ss_pred CCCc-eeeeccc----CCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeeecc-C-CCCCCCCC-cEE
Q 003878 438 KNGS-LLHQLPI----EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETI-I-PGFDRSEF-HVH 509 (789)
Q Consensus 438 ~tG~-~~~~l~~----~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~~~-~-~~~~~~~~-~~~ 509 (789)
++|. ..+.++. ....+..+++++|++.+++.++++..| .++++|+++++ ...++.... + ..++...+ ..+
T Consensus 392 ~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p-~~~l~d~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~ 469 (719)
T 1z68_A 392 GSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIP-ISTLHDGRTDQ-EIKILEENKELENALKNIQLPKEE 469 (719)
T ss_dssp SSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSC-EEEEECSSSCC-EEEEEECCHHHHHHTTSBCCCEEE
T ss_pred CCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCC-eEEEEECCCCC-EEEEeecchhhhhhhccccCCceE
Confidence 6553 1245542 233455678899999999999998887 68999998885 233443211 1 12333344 467
Q ss_pred EEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccC-CCCCCHHH-HHHHHcCCeEEEEEeecCCCCCChhHH
Q 003878 510 QVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV-TPSFSVSR-TILMRHLGAVFCIANIRGGGEYGEEWH 587 (789)
Q Consensus 510 ~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~-~~~~~~~~-~~~l~~~G~~v~~~~~RG~g~~g~~~~ 587 (789)
.+.+++.| .+|+++++.|++..+.++.|+||++||+++... ...|...+ ..+++++||+|+++|+||+|++|..|.
T Consensus 470 ~~~~~~~~--~~l~~~~~~P~~~~~~~~~p~vl~~hG~~~~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~~~~~~ 547 (719)
T 1z68_A 470 IKKLEVDE--ITLWYKMILPPQFDRSKKYPLLIQVYGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLL 547 (719)
T ss_dssp EEEEEETT--EEEEEEEEECTTCCSSSCEEEEEEECCCTTBCCCCCCCCCCHHHHHHHTTCCEEEEEECTTBSSSCHHHH
T ss_pred EEEEecCC--eEEEEEEEeCCCCCCCCCccEEEEECCCCCcCcccccchhhHHHHHHhcCCeEEEEEcCCCCCCCchhhH
Confidence 88888755 799999999998766678999999999987754 33444223 334446999999999999999999998
Q ss_pred hcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccc
Q 003878 588 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAW 667 (789)
Q Consensus 588 ~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~ 667 (789)
.......+...++|+.+++++|++++.+|++||+|+|+|+||++++.++.++|++|+++|+.+|+.++..+.. .+
T Consensus 548 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~-----~~ 622 (719)
T 1z68_A 548 YAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAPVSSWEYYAS-----VY 622 (719)
T ss_dssp GGGTTCTTHHHHHHHHHHHHHHHTTSCEEEEEEEEEEETHHHHHHHHHHTTSSSCCSEEEEESCCCCTTTSBH-----HH
T ss_pred HHHhhccCcccHHHHHHHHHHHHhcCCCCCceEEEEEECHHHHHHHHHHHhCCCceEEEEEcCCccChHHhcc-----cc
Confidence 8877777778899999999999998889999999999999999999999999999999999999998765421 12
Q ss_pred hh-hcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCC
Q 003878 668 VS-DFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQT 746 (789)
Q Consensus 668 ~~-e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~ 746 (789)
.. .+|.|...+..+.+...+|..++.++ ..||+|++||++|.+||+.++.+++++|++. +
T Consensus 623 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~P~li~~G~~D~~v~~~~~~~~~~~l~~~----------~ 683 (719)
T 1z68_A 623 TERFMGLPTKDDNLEHYKNSTVMARAEYF---------RNVDYLLIHGTADDNVHFQNSAQIAKALVNA----------Q 683 (719)
T ss_dssp HHHHHCCSSTTTTHHHHHHTCSGGGGGGG---------TTSEEEEEEETTCSSSCTHHHHHHHHHHHHT----------T
T ss_pred chhhcCCcccccchhhhhhCCHhHHHhcC---------CCCcEEEEEeCCCCCcCHHHHHHHHHHHHHC----------C
Confidence 22 24666322233446778898888876 3459999999999999999999999999988 8
Q ss_pred CcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 747 NPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 747 ~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
.++++++++++||++. .. ...+..+.+.+||.++|+
T Consensus 684 ~~~~~~~~~~~gH~~~-~~-~~~~~~~~i~~fl~~~l~ 719 (719)
T 1z68_A 684 VDFQAMWYSDQNHGLS-GL-STNHLYTHMTHFLKQCFS 719 (719)
T ss_dssp CCCEEEEETTCCTTCC-TH-HHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCCC-cc-cHHHHHHHHHHHHHHhhC
Confidence 8999999999999983 22 235778899999999875
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-46 Score=436.75 Aligned_cols=553 Identities=14% Similarity=0.134 Sum_probs=404.1
Q ss_pred HHHHHHHHHhhhcCCCCCC-ceEeCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcE
Q 003878 67 RDKLREKITKLFDSPRYDA-PFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKY 145 (789)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~ 145 (789)
..++.+.+.++...+-+++ ..++|.+++|..+..+ ...||..+ +++.+.|+.. +...+..+.|||| +
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~DG~~la~~s~~~g--~~~lw~~~--~g~~~~lt~~------~~~~~~~~~~spd--~ 76 (582)
T 3o4h_A 9 FSRIVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEG--SVNAYLYD--GGETVKLNRE------PINSVLDPHYGVG--R 76 (582)
T ss_dssp HHHHHHHHHHHHHSCEEEEEEEETTTEEEEEEEETT--EEEEEEEE--TTEEEECCSS------CCSEECEECTTCS--E
T ss_pred HHHHHHHHHHHhccchheeecCCCCCeEEEEEccCC--ceeEEEEc--CCCcEeeecc------cccccccccCCCC--e
Confidence 4556666666655554433 3578999999877444 34588853 3443443322 2235678899999 6
Q ss_pred EEEEEec-CCceEEEEEEEEc--CCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeecc
Q 003878 146 LAYALSY-SGSDWATIKLMRI--EDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVK 222 (789)
Q Consensus 146 la~~~~~-~g~~~~~i~v~dl--~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~ 222 (789)
++|+.+. +|.+...||.+++ .++.. . +....
T Consensus 77 ~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~--l~~~~------------------------------------------- 110 (582)
T 3o4h_A 77 VILVRDVSKGAEQHALFKVNTSRPGEEQ-R--LEAVK------------------------------------------- 110 (582)
T ss_dssp EEEEEECSTTSCCEEEEEEETTSTTCCE-E--CTTSC-------------------------------------------
T ss_pred EEEEeccCCCCcceEEEEEeccCCCccc-c--ccCCC-------------------------------------------
Confidence 7887775 5667788999998 55433 1 11110
Q ss_pred ccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeE
Q 003878 223 STIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYI 302 (789)
Q Consensus 223 ~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~ 302 (789)
.....+|||||+.++|..... ..+.++++.++. ...+...+.
T Consensus 111 -------------~~~~~~~s~dg~~~~~~s~~~------------------~~~~l~d~~~g~--~~~l~~~~~----- 152 (582)
T 3o4h_A 111 -------------PMRILSGVDTGEAVVFTGATE------------------DRVALYALDGGG--LRELARLPG----- 152 (582)
T ss_dssp -------------SBEEEEEEECSSCEEEEEECS------------------SCEEEEEEETTE--EEEEEEESS-----
T ss_pred -------------CceeeeeCCCCCeEEEEecCC------------------CCceEEEccCCc--EEEeecCCC-----
Confidence 124679999999998875432 113356776543 233444332
Q ss_pred EEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCCCEEEEEECCCC
Q 003878 303 FSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDA 381 (789)
Q Consensus 303 ~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG~~l~~~tn~~~ 381 (789)
.++.|||||++|++.+.+.. ....||++|++++. ...++.... ...+.|||||+.|+ .++.+
T Consensus 153 ~~~~~spDG~~la~~~~~~~-~~~~i~~~d~~~g~--------------~~~l~~~~~~~~~~~~SpDG~~l~-~~~~~- 215 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGG-GRVSLFTSNLSSGG--------------LRVFDSGEGSFSSASISPGMKVTA-GLETA- 215 (582)
T ss_dssp CEEEEEEETTEEEEEEEEET-TEEEEEEEETTTCC--------------CEEECCSSCEEEEEEECTTSCEEE-EEECS-
T ss_pred ceEEECCCCCEEEEEEEcCC-CCeEEEEEcCCCCC--------------ceEeecCCCccccceECCCCCEEE-EccCC-
Confidence 36889999999998876543 23669999998753 233433222 23456999999998 44443
Q ss_pred CCceEEEEECCCCCCeEEeccCCCCceeeeEE--------EecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeE
Q 003878 382 PKYKIIRVDLKEPNDWFEVIPEAERDVLESAT--------AVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSV 453 (789)
Q Consensus 382 ~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~--------~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v 453 (789)
...+|+++|+++++ .+ ++... ...+.++. |++++.++++...++. +.+|++ |+..+ .+.+.+
T Consensus 216 ~~~~i~~~d~~~~~-~~-~~~~~-~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~--~~l~~~--g~~~~---~~~~~v 285 (582)
T 3o4h_A 216 REARLVTVDPRDGS-VE-DLELP-SKDFSSYRPTAITWLGYLPDGRLAVVARREGR--SAVFID--GERVE---APQGNH 285 (582)
T ss_dssp SCEEEEEECTTTCC-EE-ECCCS-CSHHHHHCCSEEEEEEECTTSCEEEEEEETTE--EEEEET--TEEEC---CCSSEE
T ss_pred CeeEEEEEcCCCCc-EE-EccCC-CcChhhhhhccccceeEcCCCcEEEEEEcCCc--EEEEEE--CCeec---cCCCce
Confidence 34689999999887 44 44433 23344555 8887789999998885 555556 65533 234567
Q ss_pred EEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeeeccCCCCCC---CC-CcEEEEEEecCCCceEEEEEEEec
Q 003878 454 NAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDR---SE-FHVHQVFVPSKDGSTKIPMFIVSK 529 (789)
Q Consensus 454 ~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~~~~~~~~~---~~-~~~~~~~~~s~dg~~~i~~~l~~p 529 (789)
..++++ ++. ++++.++..+|+++|.+|..+ + .+.+ .+++ .. ...+.+.+++.+| .+|+++++.|
T Consensus 286 ~~~~~s-dg~-~l~~~s~~~~p~~l~~~d~~~-~--~~~l------~~~~~~~~~~~~~~~~~~~~~~g-~~i~~~~~~p 353 (582)
T 3o4h_A 286 GRVVLW-RGK-LVTSHTSLSTPPRIVSLPSGE-P--LLEG------GLPEDLRRSIAGSRLVWVESFDG-SRVPTYVLES 353 (582)
T ss_dssp EEEEEE-TTE-EEEEEEETTEEEEEEEETTCC-E--EECC------CCCHHHHHTEEEEEEEEEECTTS-CEEEEEEEEE
T ss_pred EEEEec-CCE-EEEEEcCCCCCCeEEEEcCCC-c--eEEE------ecCCccccccCcceEEEEECCCC-CEEEEEEEcC
Confidence 778888 665 567888999999999999754 2 3333 1222 22 3578899999999 9999999999
Q ss_pred CCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHH
Q 003878 530 KNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYL 609 (789)
Q Consensus 530 ~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L 609 (789)
++.. .+.|+||++||+++......|.... ..|+++||+|+++|+||++++|..|............++|+.+++++|
T Consensus 354 ~~~~--~~~p~vv~~HG~~~~~~~~~~~~~~-~~l~~~G~~v~~~d~rG~~~~G~s~~~~~~~~~~~~~~~d~~~~~~~l 430 (582)
T 3o4h_A 354 GRAP--TPGPTVVLVHGGPFAEDSDSWDTFA-ASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWA 430 (582)
T ss_dssp TTSC--SSEEEEEEECSSSSCCCCSSCCHHH-HHHHHTTCEEEEECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHH
T ss_pred CCCC--CCCcEEEEECCCcccccccccCHHH-HHHHhCCCEEEEeccCCCCCCchhHHhhhhhhcccccHHHHHHHHHHH
Confidence 9753 3889999999998877677777654 444459999999999999999999999888888888999999999999
Q ss_pred HHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCcc--chhh-cCCCCcHHHHHHHHhc
Q 003878 610 ISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHA--WVSD-FGCSEEEEEFYWLIKY 686 (789)
Q Consensus 610 ~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~--~~~e-~g~p~~~~~~~~l~~~ 686 (789)
++++.+| +|+++|+|+||++++.++.++|++|+++|+.+|+.++........... |... +| .++ +.+..+
T Consensus 431 ~~~~~~d--~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~ 503 (582)
T 3o4h_A 431 RESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTG--GSR---EIMRSR 503 (582)
T ss_dssp HHTTCEE--EEEEEEETHHHHHHHHHHHHSTTTSSCEEEESCCCCHHHHHHTCCHHHHHHHHHHTT--TCH---HHHHHT
T ss_pred HhCCCcc--eEEEEEECHHHHHHHHHHhcCCCceEEEEEcCCccCHHHHhhcccchhHHHHHHHcC--cCH---HHHHhc
Confidence 9998887 999999999999999999999999999999999999876543222211 2222 23 333 446889
Q ss_pred CcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchh
Q 003878 687 SPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQ 766 (789)
Q Consensus 687 sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~ 766 (789)
+|+.++.++ .+|+|++||++|.+||+.++.+++++|+.. |.++++++++++||++.....
T Consensus 504 sp~~~~~~i----------~~P~lii~G~~D~~v~~~~~~~~~~~l~~~----------g~~~~~~~~~~~gH~~~~~~~ 563 (582)
T 3o4h_A 504 SPINHVDRI----------KEPLALIHPQNASRTPLKPLLRLMGELLAR----------GKTFEAHIIPDAGHAINTMED 563 (582)
T ss_dssp CGGGGGGGC----------CSCEEEEEETTCSSSCHHHHHHHHHHHHHT----------TCCEEEEEETTCCSSCCBHHH
T ss_pred CHHHHHhcC----------CCCEEEEecCCCCCcCHHHHHHHHHHHHhC----------CCCEEEEEECCCCCCCCChHH
Confidence 999998886 799999999999999999999999999998 899999999999999874434
Q ss_pred hHHHHHHHHHHHHHHHhCC
Q 003878 767 KMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 767 ~~~~~~~~~~~fl~~~l~~ 785 (789)
..+..+.+.+||.++|+.
T Consensus 564 -~~~~~~~i~~fl~~~l~~ 581 (582)
T 3o4h_A 564 -AVKILLPAVFFLATQRER 581 (582)
T ss_dssp -HHHHHHHHHHHHHHHHTC
T ss_pred -HHHHHHHHHHHHHHHcCC
Confidence 467888999999999874
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-45 Score=435.59 Aligned_cols=601 Identities=14% Similarity=0.126 Sum_probs=400.6
Q ss_pred EEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCc----eEEEEEEEEcCCCceecccccccccc
Q 003878 106 VLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGS----DWATIKLMRIEDQIVEADALSWVCFC 181 (789)
Q Consensus 106 ~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~----~~~~i~v~dl~tg~~~~~~~~~~~~~ 181 (789)
.|++-+..+++.+.+++...... ..+.+++|||||++|||+.+..+. ...+|++||+++|+... +....+
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~~~~---~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--l~~~~~- 111 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKKIES---LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS--LDPPEV- 111 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTTTTT---TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE--CCCTTC-
T ss_pred CEEEEECCCCcEEEEeccccccc---cccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEe--ccCCcc-
Confidence 36666655666677776544321 125688999999999999764332 13689999999997522 111100
Q ss_pred cccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeec------cc--------------------
Q 003878 182 FSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVS------QF-------------------- 235 (789)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~------~~-------------------- 235 (789)
+ ..-..++.+.|+|+ .++|.++ + +||.++. ++
T Consensus 112 --~-----~~~~~~~~~SPdG~-----------~la~~~~--~--~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e 169 (723)
T 1xfd_A 112 --S-----NAKLQYAGWGPKGQ-----------QLIFIFE--N--NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE 169 (723)
T ss_dssp --C-----SCCCSBCCBCSSTT-----------CEEEEET--T--EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred --c-----cccccccEECCCCC-----------EEEEEEC--C--eEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence 0 00123567889998 4455544 1 2333222 00
Q ss_pred ----ccceEEEEeCCcEEEEEEccCCCCC-CCCC--CCc----------cc--cCCcccEEEEEECCCCCCCcEEEEecC
Q 003878 236 ----KFSSIAWTHDSKGFFYSRYPAPKEG-KDMD--AGT----------ET--DSNLYHEFYYHFLGTKQSEDILCWKDP 296 (789)
Q Consensus 236 ----~~~~~~wspDg~~i~y~~~~~~~~~-~~~~--~~~----------~~--~~~~~~~i~~~~lg~~~~~~~~~~~~~ 296 (789)
...+++|||||+.|+|...+..... ..+. .+. .. ......+|+++++.++... .....+
T Consensus 170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~--~~l~~~ 247 (723)
T 1xfd_A 170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD--LEMMPP 247 (723)
T ss_dssp TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC--EECCCC
T ss_pred EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee--EEeeCC
Confidence 0146999999999999987642110 0000 000 00 0112347889998765422 112211
Q ss_pred C----CCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec----cccc---eeEE
Q 003878 297 E----HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID----GFDA---QYEV 365 (789)
Q Consensus 297 ~----~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~----~~~~---~~~~ 365 (789)
. +...+..+.|||||++|++...+. .....|+++|++++. ...+.. ++.. ....
T Consensus 248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~~i~~~d~~~g~--------------~~~~~~~~~~~~~~~~~~~~~ 312 (723)
T 1xfd_A 248 DDPRMREYYITMVKWATSTKVAVTWLNRA-QNVSILTLCDATTGV--------------CTKKHEDESEAWLHRQNEEPV 312 (723)
T ss_dssp CCGGGSSEEEEEEEESSSSEEEEEEEETT-SCEEEEEEEETTTCC--------------EEEEEEEECSSCCCCCCCCCE
T ss_pred ccCCCccceeEEEEEeCCCeEEEEEEcCC-CCeEEEEEEeCCCCc--------------ceEEEEeccCCEEeccCCCce
Confidence 1 134567899999999887766543 335789999998752 111111 1110 1356
Q ss_pred EecCCCEEEEE-ECCCC---CCceEEEEE-CCCCCC--eEEeccCCCCceeeeEEEecCC-EEEEEEEeC--CeEEEEEE
Q 003878 366 IANDDTVFTFL-TNKDA---PKYKIIRVD-LKEPND--WFEVIPEAERDVLESATAVNLN-QMIVSYLSD--VKYVLQIR 435 (789)
Q Consensus 366 ~s~dG~~l~~~-tn~~~---~~~~L~~~d-l~~~~~--~~~l~~~~~~~~i~~v~~~~~~-~lv~~~~~~--g~~~L~~~ 435 (789)
|+|||+.|++. ++.++ ...+|+.+| ..++.. .+.+.... ......+.|++++ .|++....+ +..+|+.+
T Consensus 313 ~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 313 FSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD-WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp ECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS-SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred EcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCC-eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence 99999999987 44432 145899999 444320 34444332 2333346788754 566665554 55678888
Q ss_pred ECCCCceeeeccc---CCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeeecc-C-CCCCCCCC-cEE
Q 003878 436 DLKNGSLLHQLPI---EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRETI-I-PGFDRSEF-HVH 509 (789)
Q Consensus 436 dl~tG~~~~~l~~---~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~~~-~-~~~~~~~~-~~~ 509 (789)
+++++...+.|+. +.+.+..+++++|++.+++.++++..|..++. +..+++ +...+.... . ..+....+ ..+
T Consensus 392 ~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 469 (723)
T 1xfd_A 392 NTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVH-NTTDKK-KMFDLETNEHVKKAINDRQMPKVE 469 (723)
T ss_dssp CSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEE-ETTTCC-EEEEEECCHHHHHHHHTSCCCBCC
T ss_pred eCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEE-ECCCCC-EEEEeccChhhhhhhhhccCCCce
Confidence 7764433345553 23445678899999999999999999987654 765554 333443211 0 01112223 456
Q ss_pred EEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccC-CCCCCH-HHHHHHHcCCeEEEEEeecCCCCCChhHH
Q 003878 510 QVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV-TPSFSV-SRTILMRHLGAVFCIANIRGGGEYGEEWH 587 (789)
Q Consensus 510 ~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~-~~~~~~-~~~~~l~~~G~~v~~~~~RG~g~~g~~~~ 587 (789)
.+.+++.|| +|+++++.|++..+.++.|+||++||+++... ...|.. ....+++++||+|+++|+||+|++|..|.
T Consensus 470 ~~~~~~~~g--~l~~~~~~P~~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~vv~~d~rG~g~~g~~~~ 547 (723)
T 1xfd_A 470 YRDIEIDDY--NLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLL 547 (723)
T ss_dssp BCCEEETTE--EECCBEEBCSSCCSSSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHH
T ss_pred EEEEEcCCc--eEEEEEEeCCCCCCCCccCEEEEEcCCCCccccCccccccHHHHHhhcCCEEEEEECCCCCccccHHHH
Confidence 778888887 89999999998766788999999999987642 333331 23456666899999999999999999998
Q ss_pred hcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC----CCceeEEEecCCcccccccccccC
Q 003878 588 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR----PDLFGCALAHVGVMDMLRYHKFTI 663 (789)
Q Consensus 588 ~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~----pd~f~a~v~~~p~~d~~~~~~~~~ 663 (789)
.......+...++|+.+++++|.+++.+|++||+|+|+|+||++++.++.++ |++|+++|+.+|+.++..+..
T Consensus 548 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~v~~~~~~~~~~~~~--- 624 (723)
T 1xfd_A 548 HEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYAS--- 624 (723)
T ss_dssp HTTTTCTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSBH---
T ss_pred HHHHhccCcccHHHHHHHHHHHHhCCCcChhhEEEEEECHHHHHHHHHHHhccccCCCeEEEEEEccCCcchHHhhh---
Confidence 7766666667899999999999998888999999999999999999999999 999999999999988754321
Q ss_pred Cccchh-hcCCCC-cHHHHHHHHhcCcccCCCCCCCCCCCCCCCC-CeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCC
Q 003878 664 GHAWVS-DFGCSE-EEEEFYWLIKYSPLHNVRRPWEQNPDKPFQY-PSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSL 740 (789)
Q Consensus 664 ~~~~~~-e~g~p~-~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~-pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~ 740 (789)
.+.. ..|.|. .++ .+...+|..++.++ . +|+||+||++|.+||+.++.+++++|+..
T Consensus 625 --~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~----------~~~P~lii~G~~D~~v~~~~~~~~~~~l~~~----- 684 (723)
T 1xfd_A 625 --AFSERYLGLHGLDNR---AYEMTKVAHRVSAL----------EEQQFLIIHPTADEKIHFQHTAELITQLIRG----- 684 (723)
T ss_dssp --HHHHHHHCCCSSCCS---STTTTCTHHHHTSC----------CSCEEEEEEETTCSSSCHHHHHHHHHHHHHT-----
T ss_pred --hccHhhcCCccCChh---HHHhcChhhHHhhc----------CCCCEEEEEeCCCCCcCHhHHHHHHHHHHHC-----
Confidence 1111 124442 211 13455666666665 5 79999999999999999999999999987
Q ss_pred CCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 741 ENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 741 ~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
+.++++++++++||++..... ..+....+.+||.++|++
T Consensus 685 -----~~~~~~~~~~~~~H~~~~~~~-~~~~~~~i~~fl~~~l~~ 723 (723)
T 1xfd_A 685 -----KANYSLQIYPDESHYFTSSSL-KQHLYRSIINFFVECFRI 723 (723)
T ss_dssp -----TCCCEEEEETTCCSSCCCHHH-HHHHHHHHHHHHTTTTCC
T ss_pred -----CCCeEEEEECCCCcccccCcc-hHHHHHHHHHHHHHHhcC
Confidence 889999999999999854433 357788899999988874
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=231.09 Aligned_cols=278 Identities=13% Similarity=0.070 Sum_probs=200.0
Q ss_pred EEEEEcCCCCCcEEEEEECCCCCceEEEeeeccCCCCCCCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEE
Q 003878 465 VFISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYG 544 (789)
Q Consensus 465 l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~ 544 (789)
+++..+++..|.++|.++..+.......++. ....++......+++.+++ || .+|+++++.|++. ++.|+||++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~-dg-~~i~~~l~~p~~~---~~~P~vl~~ 158 (386)
T 2jbw_A 85 LLMSAALCAQYAQFLWFDERRQKGQARKVEL-YQKAAPLLSPPAERHELVV-DG-IPMPVYVRIPEGP---GPHPAVIML 158 (386)
T ss_dssp HHHHHHHHHHHHHTTCCSTHHHHHHHHHHHH-HHHHGGGSSSCEEEEEEEE-TT-EEEEEEEECCSSS---CCEEEEEEE
T ss_pred HHHHHHHhhceeeeeccCCCCCHHHHHHHHH-HHHHHhhcCCCeEEEEEEe-CC-EEEEEEEEcCCCC---CCCCEEEEe
Confidence 4455566677888777664311000000000 0011222245688999988 89 9999999999873 678999999
Q ss_pred cCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEe
Q 003878 545 YGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEG 624 (789)
Q Consensus 545 hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G 624 (789)
||+.+.. ...+.. ...+.++||+|+++|+||.|+.. ..........+|+.+++++|.+++.+++++|+|+|
T Consensus 159 hG~~~~~-~~~~~~--~~~l~~~G~~v~~~d~rG~G~s~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G 229 (386)
T 2jbw_A 159 GGLESTK-EESFQM--ENLVLDRGMATATFDGPGQGEMF------EYKRIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLG 229 (386)
T ss_dssp CCSSCCT-TTTHHH--HHHHHHTTCEEEEECCTTSGGGT------TTCCSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEE
T ss_pred CCCCccH-HHHHHH--HHHHHhCCCEEEEECCCCCCCCC------CCCCCCccHHHHHHHHHHHHHhCCCcCcccEEEEE
Confidence 8865433 333332 34444599999999999987641 11223345557899999999999989999999999
Q ss_pred eChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCC---ccchhhcCCCCcHHHH-HHHHhcCcccCCCCCCCCCC
Q 003878 625 GSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG---HAWVSDFGCSEEEEEF-YWLIKYSPLHNVRRPWEQNP 700 (789)
Q Consensus 625 ~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~---~~~~~e~g~p~~~~~~-~~l~~~sP~~~v~~~~~~~~ 700 (789)
+|+||++++.++.+ |++|+++|+. |+.++......... ..+...+|.+...+.+ +.+..++|..++.++
T Consensus 230 ~S~GG~la~~~a~~-~~~~~a~v~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i----- 302 (386)
T 2jbw_A 230 RSLGGNYALKSAAC-EPRLAACISW-GGFSDLDYWDLETPLTKESWKYVSKVDTLEEARLHVHAALETRDVLSQI----- 302 (386)
T ss_dssp ETHHHHHHHHHHHH-CTTCCEEEEE-SCCSCSTTGGGSCHHHHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGC-----
T ss_pred EChHHHHHHHHHcC-CcceeEEEEe-ccCChHHHHHhccHHHHHHHHHHhCCCCHHHHHHHHHHhCChhhhhccc-----
Confidence 99999999999999 8999999999 99988655431100 1112345665444555 678899999888876
Q ss_pred CCCCCCCeEEEEecCCCCCCCcHHHHHHHHHH-HHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHH
Q 003878 701 DKPFQYPSTLLLTADHDDRVVPLHSLKLLATM-QYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFM 779 (789)
Q Consensus 701 ~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L-~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl 779 (789)
.+|+|+++|++|. |++.++.+++++| +. ++++++++++||.+.. ...+..+.+.+||
T Consensus 303 -----~~P~Lii~G~~D~-v~~~~~~~l~~~l~~~-------------~~~~~~~~~~gH~~~~---~~~~~~~~i~~fl 360 (386)
T 2jbw_A 303 -----ACPTYILHGVHDE-VPLSFVDTVLELVPAE-------------HLNLVVEKDGDHCCHN---LGIRPRLEMADWL 360 (386)
T ss_dssp -----CSCEEEEEETTSS-SCTHHHHHHHHHSCGG-------------GEEEEEETTCCGGGGG---GTTHHHHHHHHHH
T ss_pred -----CCCEEEEECCCCC-CCHHHHHHHHHHhcCC-------------CcEEEEeCCCCcCCcc---chHHHHHHHHHHH
Confidence 6899999999999 9999999999988 42 4689999999997632 2346778899999
Q ss_pred HHHhCCC
Q 003878 780 AKMLGAS 786 (789)
Q Consensus 780 ~~~l~~~ 786 (789)
.++|+..
T Consensus 361 ~~~l~~~ 367 (386)
T 2jbw_A 361 YDVLVAG 367 (386)
T ss_dssp HHHHTSS
T ss_pred HHhcCCc
Confidence 9999864
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=218.21 Aligned_cols=246 Identities=19% Similarity=0.210 Sum_probs=178.8
Q ss_pred CCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCC
Q 003878 504 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 583 (789)
Q Consensus 504 ~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g 583 (789)
..+.++.+.+++.|| .+|+++++.|++. .++.|+||++||+.+... +......++. +||+|+++|+||.|+.+
T Consensus 64 ~~~~~~~~~~~~~dg-~~i~~~~~~P~~~--~~~~p~vv~~HG~g~~~~---~~~~~~~l~~-~G~~v~~~d~rG~g~s~ 136 (337)
T 1vlq_A 64 KTVEAYDVTFSGYRG-QRIKGWLLVPKLE--EEKLPCVVQYIGYNGGRG---FPHDWLFWPS-MGYICFVMDTRGQGSGW 136 (337)
T ss_dssp SSEEEEEEEEECGGG-CEEEEEEEEECCS--CSSEEEEEECCCTTCCCC---CGGGGCHHHH-TTCEEEEECCTTCCCSS
T ss_pred CCeEEEEEEEEcCCC-CEEEEEEEecCCC--CCCccEEEEEcCCCCCCC---Cchhhcchhh-CCCEEEEecCCCCCCcc
Confidence 456788999999999 9999999999873 467899999999765532 2222234444 99999999999998554
Q ss_pred hh-----------------HHhcccccCC----cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc
Q 003878 584 EE-----------------WHKGGALAKK----QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDL 642 (789)
Q Consensus 584 ~~-----------------~~~~~~~~~~----~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~ 642 (789)
.. |...+..... ...++|+.+++++|.+++.+|+++|+++|+|+||.+++.++.++| .
T Consensus 137 ~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p-~ 215 (337)
T 1vlq_A 137 LKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK-K 215 (337)
T ss_dssp SCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-S
T ss_pred cCCCCcccccccCCCCCCcccccCCCCHHHhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeCHHHHHHHHHHhcCC-C
Confidence 21 0001100100 145899999999999998889999999999999999999999998 4
Q ss_pred eeEEEecCCccccccc-ccccCCccch--hhc--CCC-CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCC
Q 003878 643 FGCALAHVGVMDMLRY-HKFTIGHAWV--SDF--GCS-EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADH 716 (789)
Q Consensus 643 f~a~v~~~p~~d~~~~-~~~~~~~~~~--~e~--g~p-~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~ 716 (789)
++++|+.+|+++.... ........+. .+| ..+ ...+.+..+..++|...+.++ .+|+|+++|++
T Consensus 216 v~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----------~~P~lii~G~~ 285 (337)
T 1vlq_A 216 AKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARA----------KIPALFSVGLM 285 (337)
T ss_dssp CCEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTC----------CSCEEEEEETT
T ss_pred ccEEEECCCcccCHHHHHhcCCCcchHHHHHHHHhCchhHHHHHHhhhhccHHHHHHHc----------CCCEEEEeeCC
Confidence 8899999986653221 1111100110 111 233 233445566777888777776 69999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 717 DDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 717 D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
|.+||++++.+++++|+ .++++.+++++||++.. .+....+++||.++|+.
T Consensus 286 D~~~p~~~~~~~~~~l~-------------~~~~~~~~~~~gH~~~~-----~~~~~~~~~fl~~~l~~ 336 (337)
T 1vlq_A 286 DNICPPSTVFAAYNYYA-------------GPKEIRIYPYNNHEGGG-----SFQAVEQVKFLKKLFEK 336 (337)
T ss_dssp CSSSCHHHHHHHHHHCC-------------SSEEEEEETTCCTTTTH-----HHHHHHHHHHHHHHHC-
T ss_pred CCCCCchhHHHHHHhcC-------------CCcEEEEcCCCCCCCcc-----hhhHHHHHHHHHHHHhc
Confidence 99999999998887764 25789999999999732 24567889999998863
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.1e-22 Score=212.11 Aligned_cols=244 Identities=16% Similarity=0.113 Sum_probs=171.4
Q ss_pred CCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHc-CCeEEEEEeecCCCCCC
Q 003878 505 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRH-LGAVFCIANIRGGGEYG 583 (789)
Q Consensus 505 ~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~RG~g~~g 583 (789)
.+..+.+++++.|| +|++.++.|++. +.|+||++|||................|++ .||+|+.+|||++++..
T Consensus 60 ~~~~~~~~~~~~~g--~i~~~~~~p~~~----~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~V~~~dyr~~p~~~ 133 (326)
T 3ga7_A 60 SMTTRTCAVPTPYG--DVTTRLYSPQPT----SQATLYYLHGGGFILGNLDTHDRIMRLLARYTGCTVIGIDYSLSPQAR 133 (326)
T ss_dssp CCEEEEEEECCTTS--CEEEEEEESSSS----CSCEEEEECCSTTTSCCTTTTHHHHHHHHHHHCSEEEEECCCCTTTSC
T ss_pred CcceEEEEeecCCC--CeEEEEEeCCCC----CCcEEEEECCCCcccCChhhhHHHHHHHHHHcCCEEEEeeCCCCCCCC
Confidence 45568899999888 699999999862 339999999987443333333334555553 69999999999887642
Q ss_pred hhHHhcccccCCcchHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhCCCc------eeEEEecCCccc
Q 003878 584 EEWHKGGALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQRPDL------FGCALAHVGVMD 654 (789)
Q Consensus 584 ~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~pd~------f~a~v~~~p~~d 654 (789)
....++|+.++++||.++. .+|++||+|+|+|+||.+++.++.++|+. ++++|+.+|+.+
T Consensus 134 -----------~~~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~la~~~a~~~~~~~~~~~~~~~~vl~~~~~~ 202 (326)
T 3ga7_A 134 -----------YPQAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIAILLWYGLYG 202 (326)
T ss_dssp -----------TTHHHHHHHHHHHHHHHTTTTTTCCCSEEEEEEETHHHHHHHHHHHHHHHHTCCSSEEEEEEEESCCCS
T ss_pred -----------CCcHHHHHHHHHHHHHHhHHHhCCChhheEEEEeCHHHHHHHHHHHHHHhcCCCccCceEEEEeccccc
Confidence 3456799999999999874 46999999999999999999999988775 899999999887
Q ss_pred ccccccccCCccchhhcCCCCcHHHHHHHHhc--------CcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHH
Q 003878 655 MLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKY--------SPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSL 726 (789)
Q Consensus 655 ~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~--------sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~ 726 (789)
......... +...+-.........++..| +|+...... .-....||+||+||+.|.+| .++.
T Consensus 203 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~P~li~~G~~D~~~--~~~~ 272 (326)
T 3ga7_A 203 LQDSVSRRL---FGGAWDGLTREDLDMYEKAYLRNDEDRESPWYCLFNN-----DLTRDVPPCFIASAEFDPLI--DDSR 272 (326)
T ss_dssp CSCCHHHHH---CCCTTTTCCHHHHHHHHHHHCSSGGGGGCTTTSGGGS-----CCSSCCCCEEEEEETTCTTH--HHHH
T ss_pred cCCChhHhh---hcCCCCCCCHHHHHHHHHHhCCCCCccCCcccCCCcc-----hhhcCCCCEEEEecCcCcCH--HHHH
Confidence 643221000 00000000111111111111 333221000 00013789999999999998 4889
Q ss_pred HHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCc---hhhHHHHHHHHHHHHHHHhCC
Q 003878 727 KLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP---TQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 727 ~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~~ 785 (789)
+++++|++. |.+++++++++++|++... ..+..+..+++.+||.++++.
T Consensus 273 ~~~~~l~~~----------g~~~~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~fl~~~l~~ 324 (326)
T 3ga7_A 273 LLHQTLQAH----------QQPCEYKMYPGTLHAFLHYSRMMTIADDALQDGARFFMARMKT 324 (326)
T ss_dssp HHHHHHHHT----------TCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHC----------CCcEEEEEeCCCccchhhhcCccHHHHHHHHHHHHHHHHHhcc
Confidence 999999998 9999999999999998432 123457788999999998864
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.9e-24 Score=228.99 Aligned_cols=286 Identities=12% Similarity=0.032 Sum_probs=178.0
Q ss_pred ccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEE-eeeccCC-CCCC---CCCcEEEEEEecCCCceEEEEEEEecCCC-
Q 003878 459 RREDSVVFISFTSFLIPGIVYQCNLKTETPEMKI-FRETIIP-GFDR---SEFHVHQVFVPSKDGSTKIPMFIVSKKNI- 532 (789)
Q Consensus 459 s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~-l~~~~~~-~~~~---~~~~~~~~~~~s~dg~~~i~~~l~~p~~~- 532 (789)
+++.+++++.+.++..|...++++. +|+ ... +.....+ ..++ ..+..+.+.+.+ + ..+++.++.|++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~--~~r~~~~~~~~~~~~~~~~~~v~~~~v~~~~--~-~~~~~~~~~P~~~~ 77 (338)
T 2o7r_A 4 DHLETTGSSDPNTNLLKYLPIVLNP-DRT--ITRPIQIPSTAASPDPTSSSPVLTKDLALNP--L-HNTFVRLFLPRHAL 77 (338)
T ss_dssp --------------CTTTCSCEECT-TSC--EECCSCCCBCCCCCCTTSSCSEEEEEEEEET--T-TTEEEEEEEEGGGG
T ss_pred CCCCCceeeccCcccccccceEECC-CCe--EEecCCCCCCCCCCCcccCCCEEEEEEEecC--C-CCeEEEEEeCCCCC
Confidence 3456678888888888887777765 443 222 2222222 2333 456778888876 4 5688888999864
Q ss_pred CCCCCccEEEEEcCCCCccCCCC---CCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHH
Q 003878 533 KLDGSHPCLLYGYGGFNISVTPS---FSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYL 609 (789)
Q Consensus 533 ~~~~~~P~ll~~hGg~~~~~~~~---~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L 609 (789)
..+++.|+||++|||........ |......+..++|++|+.+|+||+++.. ....++|+.++++||
T Consensus 78 ~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~~~la~~~g~~vv~~d~rg~~~~~-----------~~~~~~d~~~~~~~l 146 (338)
T 2o7r_A 78 YNSAKLPLVVYFHGGGFILFSAASTIFHDFCCEMAVHAGVVIASVDYRLAPEHR-----------LPAAYDDAMEALQWI 146 (338)
T ss_dssp GSSCCEEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTCEEEEEECCCTTTTC-----------TTHHHHHHHHHHHHH
T ss_pred cCCCCceEEEEEcCCcCcCCCCCchhHHHHHHHHHHHCCcEEEEecCCCCCCCC-----------CchHHHHHHHHHHHH
Confidence 34578999999999875544333 4443444543589999999999977532 245689999999999
Q ss_pred HHcC------CCCCCcEEEEeeChHHHHHHHHHHhCCC--------ceeEEEecCCcccccccccccCCccchhhcCCC-
Q 003878 610 ISAG------YTQSRKLCIEGGSNGGLLVGACINQRPD--------LFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCS- 674 (789)
Q Consensus 610 ~~~~------~~d~~~i~i~G~S~GG~l~~~~~~~~pd--------~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p- 674 (789)
.++. .+|++|++++|+|+||.+++.++.++|+ +++++|+.+|+.++...... .......+
T Consensus 147 ~~~~~~~~~~~~d~~~v~l~G~S~GG~ia~~~a~~~~~~~~~~~~~~v~~~vl~~p~~~~~~~~~~-----~~~~~~~~~ 221 (338)
T 2o7r_A 147 KDSRDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGLVLDEPGFGGSKRTGS-----ELRLANDSR 221 (338)
T ss_dssp HTCCCHHHHHHEEEEEEEEEEETHHHHHHHHHHHHHHTTHHHHTTCCEEEEEEESCCCCCSSCCHH-----HHHTTTCSS
T ss_pred HhCCcchhhccCCcceEEEEEeCccHHHHHHHHHHhccccccCCCCceeEEEEECCccCCCcCChh-----hhccCCCcc
Confidence 9863 2677999999999999999999999888 89999999998876433210 00000000
Q ss_pred CcHHHHHH-HHhc------------CcccCC------CCCCCCCCCCCCCCC-eEEEEecCCCCCCCcHHHHHHHHHHHH
Q 003878 675 EEEEEFYW-LIKY------------SPLHNV------RRPWEQNPDKPFQYP-STLLLTADHDDRVVPLHSLKLLATMQY 734 (789)
Q Consensus 675 ~~~~~~~~-l~~~------------sP~~~v------~~~~~~~~~~~~~~p-p~Li~~g~~D~~V~~~~~~~~~~~L~~ 734 (789)
......+. +..+ +|+... ... ...| |+||++|++|..++ ++.+++++|++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------~~~~~P~Lvi~G~~D~~~~--~~~~~~~~l~~ 291 (338)
T 2o7r_A 222 LPTFVLDLIWELSLPMGADRDHEYCNPTAESEPLYSFDKI--------RSLGWRVMVVGCHGDPMID--RQMELAERLEK 291 (338)
T ss_dssp SCHHHHHHHHHHHSCTTCCTTSTTTCCC----CCTHHHHH--------HHHTCEEEEEEETTSTTHH--HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhCCCCCCCCCcccCCCCCCcccccHhhh--------cCCCCCEEEEECCCCcchH--HHHHHHHHHHH
Confidence 00000001 1111 111110 000 0134 99999999999887 56889999998
Q ss_pred hhccCCCCCCCCCcEEEEEeCCCCcCCCCc-hhhHHHHHHHHHHHHHHHhCCC
Q 003878 735 VLCTSLENSPQTNPIIGRIERKAGHGVGLP-TQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 735 ~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~-~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
. +.++++++++++||++... ..+..+..+.+.+||.++++..
T Consensus 292 ~----------~~~~~~~~~~g~gH~~~~~~~~~~~~~~~~i~~Fl~~~~~~~ 334 (338)
T 2o7r_A 292 K----------GVDVVAQFDVGGYHAVKLEDPEKAKQFFVILKKFVVDSCTTK 334 (338)
T ss_dssp T----------TCEEEEEEESSCCTTGGGTCHHHHHHHHHHHHHHHC------
T ss_pred C----------CCcEEEEEECCCceEEeccChHHHHHHHHHHHHHHHhhcccc
Confidence 7 8899999999999987432 2233567788999999887643
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-22 Score=208.95 Aligned_cols=237 Identities=13% Similarity=0.093 Sum_probs=172.0
Q ss_pred EEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcc
Q 003878 511 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGG 590 (789)
Q Consensus 511 ~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~ 590 (789)
..+.+.+| .++.+++..|....++++.|+||++|||................|+++||.|+++|+||.|+...
T Consensus 17 ~~~~~~~g-~~l~~~~~~~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~------ 89 (276)
T 3hxk_A 17 STFSLNDT-AWVDFYQLQNPRQNENYTFPAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLNYTVMNKGTN------ 89 (276)
T ss_dssp EECCCBTT-BEEEEECCCC------CCBCEEEEECCSTTTSCCGGGSHHHHHHHHHTTCEEEEEECCCTTSCCC------
T ss_pred ccccCCCC-eEEEEEEeCCcccccCCCCCEEEEEcCCccccCCchhhHHHHHHHHHCCCEEEEecCccCCCcCC------
Confidence 34566788 88887766554332347889999999975343333333334555656999999999999875220
Q ss_pred cccCCcchHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHh-CCCceeEEEecCCcccccccccccCCcc
Q 003878 591 ALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQ-RPDLFGCALAHVGVMDMLRYHKFTIGHA 666 (789)
Q Consensus 591 ~~~~~~~~~~D~~~~~~~L~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~-~pd~f~a~v~~~p~~d~~~~~~~~~~~~ 666 (789)
.........|+.+++++|.+.. .+|+++|+++|+|+||.+++.++.+ .+++++++|+.+|++++....... ..
T Consensus 90 -~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~p~~~~~~~~~~~--~~ 166 (276)
T 3hxk_A 90 -YNFLSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFGWPSD--LS 166 (276)
T ss_dssp -SCTHHHHHHHHHHHHHHHHHHTTTTTBCTTCCEEEEEHHHHHHHHHHSSSCSTTCCSEEEEEEECCBTTSSCSSS--SS
T ss_pred -CCcCchHHHHHHHHHHHHHHhHHHcCCCcceEEEEEeCHHHHHHHHHHhhccCCCccEEEEecCcccHHhhCCcc--hh
Confidence 0111245789999999998864 2688999999999999999999988 788999999999998865543211 11
Q ss_pred chhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCC
Q 003878 667 WVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQT 746 (789)
Q Consensus 667 ~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~ 746 (789)
+ ..+- +... ..++|...+.+. .+|+|++||++|..||+.++.+++++|+.. +
T Consensus 167 ~-~~~~-~~~~------~~~~~~~~~~~~----------~~P~lii~G~~D~~vp~~~~~~~~~~l~~~----------~ 218 (276)
T 3hxk_A 167 H-FNFE-IENI------SEYNISEKVTSS----------TPPTFIWHTADDEGVPIYNSLKYCDRLSKH----------Q 218 (276)
T ss_dssp S-SCCC-CSCC------GGGBTTTTCCTT----------SCCEEEEEETTCSSSCTHHHHHHHHHHHTT----------T
T ss_pred h-hhcC-chhh------hhCChhhccccC----------CCCEEEEecCCCceeChHHHHHHHHHHHHc----------C
Confidence 1 1111 1110 356777777765 789999999999999999999999999987 8
Q ss_pred CcEEEEEeCCCCcCCCCchh-----------hHHHHHHHHHHHHHHHhCC
Q 003878 747 NPIIGRIERKAGHGVGLPTQ-----------KMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 747 ~~~~l~~~~~~gH~~~~~~~-----------~~~~~~~~~~~fl~~~l~~ 785 (789)
.++++++++++||++..... ...++...+.+||.++.+.
T Consensus 219 ~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~ 268 (276)
T 3hxk_A 219 VPFEAHFFESGPHGVSLANRTTAPSDAYCLPSVHRWVSWASDWLERQIKN 268 (276)
T ss_dssp CCEEEEEESCCCTTCTTCSTTSCSSSTTCCHHHHTHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCccccCccccccccccCchHHHHHHHHHHHHHhCccc
Confidence 89999999999998764222 3456778889999988754
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=205.50 Aligned_cols=235 Identities=11% Similarity=0.040 Sum_probs=166.6
Q ss_pred cEEEEEEecCCCceEEEEEEEecCC---CCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCC
Q 003878 507 HVHQVFVPSKDGSTKIPMFIVSKKN---IKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 583 (789)
Q Consensus 507 ~~~~~~~~s~dg~~~i~~~l~~p~~---~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g 583 (789)
..+.+.+. .+| .++++.++.|++ ....++.|+||++|||................|+++||.|+++|+||+|+.+
T Consensus 3 ~~~~~~~~-~~~-~~~~~~~~~p~~~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~ 80 (277)
T 3bxp_A 3 QVEQRTLN-TAA-HPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQLIVGDQ 80 (277)
T ss_dssp EEEEEEEC-STT-CCEEEEEEEECCCCSSSCCCCEEEEEEECCSTTTSCCCTTHHHHHHHHHHTTCEEEEEECCCSTTTC
T ss_pred ceEEEEec-cCC-CcceEEEEeCCcccccccCCCccEEEEECCCccccCCCccchHHHHHHHHCCCEEEEEecccCCCCC
Confidence 34566664 577 789999999983 1235678999999997543333322223445555599999999999976322
Q ss_pred hhHHhcccccCCcchHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhC--------------CCceeEE
Q 003878 584 EEWHKGGALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQR--------------PDLFGCA 646 (789)
Q Consensus 584 ~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--------------pd~f~a~ 646 (789)
. ......+|+.+++++|.+.. .+++++|+++|+|+||.+++.++.++ |.+++++
T Consensus 81 ~---------~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 151 (277)
T 3bxp_A 81 S---------VYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAI 151 (277)
T ss_dssp C---------CTTHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTSHHHHHHTTCTTCCCCCSEE
T ss_pred c---------cCchHHHHHHHHHHHHHhhhhhcCCChhheEEEEeCHHHHHHHHHHhhccCcccccccCcccccCCcCEE
Confidence 1 22356789999999998762 25788999999999999999999885 7789999
Q ss_pred EecCCcccccccccccCCccch-hhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHH
Q 003878 647 LAHVGVMDMLRYHKFTIGHAWV-SDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHS 725 (789)
Q Consensus 647 v~~~p~~d~~~~~~~~~~~~~~-~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~ 725 (789)
|+.+|+.++..... ....+. ..++ .+..++|...+... .+|+|++||++|..||+.++
T Consensus 152 v~~~p~~~~~~~~~--~~~~~~~~~~~---------~~~~~~~~~~~~~~----------~~P~lii~G~~D~~vp~~~~ 210 (277)
T 3bxp_A 152 ILGYPVIDLTAGFP--TTSAARNQITT---------DARLWAAQRLVTPA----------SKPAFVWQTATDESVPPINS 210 (277)
T ss_dssp EEESCCCBTTSSSS--SSHHHHHHHCS---------CGGGSBGGGGCCTT----------SCCEEEEECTTCCCSCTHHH
T ss_pred EEeCCcccCCCCCC--Cccccchhccc---------hhhhcCHhhccccC----------CCCEEEEeeCCCCccChHHH
Confidence 99999987543211 000111 0011 12345677666664 78999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCch-------------hhHHHHHHHHHHHHHHHh
Q 003878 726 LKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT-------------QKMIDEAADRYGFMAKML 783 (789)
Q Consensus 726 ~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~-------------~~~~~~~~~~~~fl~~~l 783 (789)
.+++++|++. +.++++++++++||++.... ....++...+.+||.++.
T Consensus 211 ~~~~~~l~~~----------~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~ 271 (277)
T 3bxp_A 211 LKYVQAMLQH----------QVATAYHLFGSGIHGLALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQG 271 (277)
T ss_dssp HHHHHHHHHT----------TCCEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHC----------CCeEEEEEeCCCCcccccccccccCccccccccchHHHHHHHHHHHHHhcc
Confidence 9999999987 88999999999999764332 223567888999998764
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-21 Score=212.79 Aligned_cols=221 Identities=15% Similarity=0.131 Sum_probs=173.0
Q ss_pred cEEEEEEecC-CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCC--------CCH-HHHHHHHcCCeEEEEEee
Q 003878 507 HVHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPS--------FSV-SRTILMRHLGAVFCIANI 576 (789)
Q Consensus 507 ~~~~~~~~s~-dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~--------~~~-~~~~~l~~~G~~v~~~~~ 576 (789)
..+.+.+.+. || .++++.++.|++..+.++.|+||++||+.+...... +.. ....+....|+.++.+++
T Consensus 143 ~~~~~~~~~~~dg-~~l~~~v~~P~~~~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vv~pd~ 221 (380)
T 3doh_A 143 DFLAFTFKDPETG-VEIPYRLFVPKDVNPDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQC 221 (380)
T ss_dssp GEEEEEEECTTTC-CEEEEEEECCSSCCTTSCEEEEEEECCGGGCSSSSSHHHHSSTTTTGGGSHHHHTTSCCEEEEECC
T ss_pred cccceeeccCCCC-cEEEEEEEcCCCCCCCCCccEEEEECCCCCCCCchhhhhhccccceeecCccccccCCEEEEEecC
Confidence 3577888998 99 999999999998666788999999999875533211 110 012233357889999999
Q ss_pred cCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccc
Q 003878 577 RGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML 656 (789)
Q Consensus 577 RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~ 656 (789)
||++++|..|...+........+.|+.+++++++++..+|++||+++|+|+||++++.++.++|++|+++|+.+|..+.
T Consensus 222 ~g~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~sg~~~~- 300 (380)
T 3doh_A 222 PPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGDV- 300 (380)
T ss_dssp CTTCCSBTTTTCSSCTTSBCHHHHHHHHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCG-
T ss_pred CCCCcccccccccccccCCcchHHHHHHHHHHHHHhcCCCcCcEEEEEECccHHHHHHHHHhCCccceEEEEecCCCCh-
Confidence 9999999888876555566778899999999999987789999999999999999999999999999999999987421
Q ss_pred ccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhh
Q 003878 657 RYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVL 736 (789)
Q Consensus 657 ~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~ 736 (789)
..+... ..+|+|++||++|..||+.++.+++++|++.
T Consensus 301 ---------------------------------~~~~~~---------~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~- 337 (380)
T 3doh_A 301 ---------------------------------SKVERI---------KDIPIWVFHAEDDPVVPVENSRVLVKKLAEI- 337 (380)
T ss_dssp ---------------------------------GGGGGG---------TTSCEEEEEETTCSSSCTHHHHHHHHHHHHT-
T ss_pred ---------------------------------hhhhhc---------cCCCEEEEecCCCCccCHHHHHHHHHHHHHC-
Confidence 011111 2379999999999999999999999999988
Q ss_pred ccCCCCCCCCCcEEEEEeCCC---CcCCCCchhhHHHHHH--HHHHHHHHH
Q 003878 737 CTSLENSPQTNPIIGRIERKA---GHGVGLPTQKMIDEAA--DRYGFMAKM 782 (789)
Q Consensus 737 ~~~~~~~~~~~~~~l~~~~~~---gH~~~~~~~~~~~~~~--~~~~fl~~~ 782 (789)
|.++++.+++++ +|++..... ....+. .+++||.++
T Consensus 338 ---------g~~~~~~~~~~~~h~~h~~~~H~~-~~~~~~~~~i~~wL~~~ 378 (380)
T 3doh_A 338 ---------GGKVRYTEYEKGFMEKHGWDPHGS-WIPTYENQEAIEWLFEQ 378 (380)
T ss_dssp ---------TCCEEEEEECTTHHHHTTCCTTCT-HHHHHTCHHHHHHHHTC
T ss_pred ---------CCceEEEEecCCcccCCCCCCchh-HHHhcCCHHHHHHHHhh
Confidence 889999999999 443332211 223344 788999765
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=201.99 Aligned_cols=215 Identities=16% Similarity=0.109 Sum_probs=139.8
Q ss_pred EEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHH
Q 003878 508 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWH 587 (789)
Q Consensus 508 ~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~ 587 (789)
.|+......|| .+||++++.|++ .++.|+||++||+.+....+.+.. ..+.|+++||+|+.+|+||+|+.+....
T Consensus 30 ~e~~~~~~~dG-~~i~g~l~~P~~---~~~~p~Vl~~HG~g~~~~~~~~~~-~a~~la~~Gy~Vl~~D~rG~G~s~~~~~ 104 (259)
T 4ao6_A 30 QERGFSLEVDG-RTVPGVYWSPAE---GSSDRLVLLGHGGTTHKKVEYIEQ-VAKLLVGRGISAMAIDGPGHGERASVQA 104 (259)
T ss_dssp EEEEEEEEETT-EEEEEEEEEESS---SCCSEEEEEEC--------CHHHH-HHHHHHHTTEEEEEECCCC---------
T ss_pred eEEEEEEeeCC-eEEEEEEEeCCC---CCCCCEEEEeCCCcccccchHHHH-HHHHHHHCCCeEEeeccCCCCCCCCccc
Confidence 34444445799 999999999987 356799999999987655555543 3556666999999999999987654432
Q ss_pred hcccccC---------------CcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 588 KGGALAK---------------KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 588 ~~~~~~~---------------~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
....... ....+.|..+++++|... +|+++|+++|+|+||.+++.++...|+ ++|+|+..+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~l~~l~~~--~d~~rv~~~G~S~GG~~a~~~a~~~pr-i~Aav~~~~~ 181 (259)
T 4ao6_A 105 GREPTDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEAE--EGPRPTGWWGLSMGTMMGLPVTASDKR-IKVALLGLMG 181 (259)
T ss_dssp ----CCGGGSTTHHHHHHHTTHHHHHHHHHHHHHHHHHHH--HCCCCEEEEECTHHHHHHHHHHHHCTT-EEEEEEESCC
T ss_pred ccccchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc--cCCceEEEEeechhHHHHHHHHhcCCc-eEEEEEeccc
Confidence 2211110 012245778888888654 688999999999999999999999886 5555544332
Q ss_pred ccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHH
Q 003878 653 MDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATM 732 (789)
Q Consensus 653 ~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L 732 (789)
.+.. .. .++...+.++ ..|+|++||++|.+||++++.+++++|
T Consensus 182 ~~~~-------------------~~--------~~~~~~a~~i----------~~P~Li~hG~~D~~vp~~~~~~l~~al 224 (259)
T 4ao6_A 182 VEGV-------------------NG--------EDLVRLAPQV----------TCPVRYLLQWDDELVSLQSGLELFGKL 224 (259)
T ss_dssp TTST-------------------TH--------HHHHHHGGGC----------CSCEEEEEETTCSSSCHHHHHHHHHHC
T ss_pred cccc-------------------cc--------cchhhhhccC----------CCCEEEEecCCCCCCCHHHHHHHHHHh
Confidence 2100 00 0122233444 679999999999999999999999988
Q ss_pred HHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 733 QYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
. +....++++++ +|... +. .+..+.+++||+++|+
T Consensus 225 ~------------~~~k~l~~~~G-~H~~~-p~---~e~~~~~~~fl~~hLk 259 (259)
T 4ao6_A 225 G------------TKQKTLHVNPG-KHSAV-PT---WEMFAGTVDYLDQRLK 259 (259)
T ss_dssp C------------CSSEEEEEESS-CTTCC-CH---HHHTHHHHHHHHHHCC
T ss_pred C------------CCCeEEEEeCC-CCCCc-CH---HHHHHHHHHHHHHhcC
Confidence 5 33567888876 66543 22 3556788999999986
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-21 Score=206.40 Aligned_cols=243 Identities=15% Similarity=0.117 Sum_probs=172.6
Q ss_pred CCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCc-cCCCCCCHHHHHHHHcCCeEEEEEeecCCCCC
Q 003878 504 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI-SVTPSFSVSRTILMRHLGAVFCIANIRGGGEY 582 (789)
Q Consensus 504 ~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~-~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~ 582 (789)
..+..+.+.+++.|| .+|+++++.|++ .++.|+||++||+.+. ... +. ....++. +||.|+++|+||.|+.
T Consensus 52 ~~~~~~~~~~~~~~g-~~i~~~~~~P~~---~~~~p~vv~~HG~~~~~~~~--~~-~~~~l~~-~g~~v~~~d~rg~g~s 123 (318)
T 1l7a_A 52 DGVKVYRLTYKSFGN-ARITGWYAVPDK---EGPHPAIVKYHGYNASYDGE--IH-EMVNWAL-HGYATFGMLVRGQQRS 123 (318)
T ss_dssp SSEEEEEEEEEEGGG-EEEEEEEEEESS---CSCEEEEEEECCTTCCSGGG--HH-HHHHHHH-TTCEEEEECCTTTSSS
T ss_pred CCeEEEEEEEEccCC-CEEEEEEEeeCC---CCCccEEEEEcCCCCCCCCC--cc-cccchhh-CCcEEEEecCCCCCCC
Confidence 345678899999999 999999999986 4678999999998765 322 22 2334454 8999999999999887
Q ss_pred ChhHHhcccccC--------------CcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEe
Q 003878 583 GEEWHKGGALAK--------------KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA 648 (789)
Q Consensus 583 g~~~~~~~~~~~--------------~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~ 648 (789)
+..+...+.... ....++|+.+++++|.++..+|+++|+++|+|+||.+++.++.++|+ ++++|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~v~ 202 (318)
T 1l7a_A 124 EDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVA 202 (318)
T ss_dssp CCCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEE
T ss_pred CCcccccCCccccceeccCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceeEEEecChHHHHHHHHhccCCC-ccEEEe
Confidence 654321111000 02347999999999999988899999999999999999999999887 566677
Q ss_pred cCCccccc-ccccccCCcc------chhhcCCC-CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCC
Q 003878 649 HVGVMDML-RYHKFTIGHA------WVSDFGCS-EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRV 720 (789)
Q Consensus 649 ~~p~~d~~-~~~~~~~~~~------~~~e~g~p-~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V 720 (789)
.+|+++.. .......... +...++.+ ...+.+..+..++|...+.++ .+|+|+++|.+|..|
T Consensus 203 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~P~li~~g~~D~~~ 272 (318)
T 1l7a_A 203 DYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRV----------KVPVLMSIGLIDKVT 272 (318)
T ss_dssp ESCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGC----------CSCEEEEEETTCSSS
T ss_pred cCCcccCHHHHHhcCCcCccHHHHHHHhccCCcccHHHHHHhhccccHHHHHhhC----------CCCEEEEeccCCCCC
Confidence 88865422 1111110001 11111212 122333444555666666665 689999999999999
Q ss_pred CcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 721 VPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 721 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
|+.++.++++++. .++++.+++++||... .+....+.+||.++|+
T Consensus 273 ~~~~~~~~~~~l~-------------~~~~~~~~~~~~H~~~------~~~~~~~~~fl~~~l~ 317 (318)
T 1l7a_A 273 PPSTVFAAYNHLE-------------TKKELKVYRYFGHEYI------PAFQTEKLAFFKQILK 317 (318)
T ss_dssp CHHHHHHHHHHCC-------------SSEEEEEETTCCSSCC------HHHHHHHHHHHHHHHC
T ss_pred CcccHHHHHhhcC-------------CCeeEEEccCCCCCCc------chhHHHHHHHHHHHhC
Confidence 9999988887664 2478999999999932 2456788999999886
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-21 Score=196.87 Aligned_cols=225 Identities=15% Similarity=0.139 Sum_probs=163.2
Q ss_pred CCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCCh
Q 003878 505 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE 584 (789)
Q Consensus 505 ~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~ 584 (789)
.+..+.+.+++ +| .+++++++.|++. .++.|+||++||..+.. ..+. .....|+++||.|+++|+||.|+...
T Consensus 3 ~~~~~~~~~~~-~~-~~~~~~~~~p~~~--~~~~p~vv~~HG~~g~~--~~~~-~~~~~l~~~G~~v~~~d~~g~g~~~~ 75 (241)
T 3f67_A 3 AIIAGETSIPS-QG-ENMPAYHARPKNA--DGPLPIVIVVQEIFGVH--EHIR-DLCRRLAQEGYLAIAPELYFRQGDPN 75 (241)
T ss_dssp CEEEEEEEEEE-TT-EEEEEEEEEETTC--CSCEEEEEEECCTTCSC--HHHH-HHHHHHHHTTCEEEEECTTTTTCCGG
T ss_pred cceeeeEEEec-CC-cceEEEEecCCCC--CCCCCEEEEEcCcCccC--HHHH-HHHHHHHHCCcEEEEecccccCCCCC
Confidence 45677888888 88 9999999999863 36789999999966543 2222 33455556999999999998765433
Q ss_pred hHHhcc-------cccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccc
Q 003878 585 EWHKGG-------ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 657 (789)
Q Consensus 585 ~~~~~~-------~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~ 657 (789)
.+.... .........+|+.+++++|.+++ .|+++|+++|+|+||.+++.++.++|+ ++++|+..+.....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~d~~~i~l~G~S~Gg~~a~~~a~~~~~-~~~~v~~~~~~~~~- 152 (241)
T 3f67_A 76 EYHDIPTLFKELVSKVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ-LKAAVAWYGKLVGE- 152 (241)
T ss_dssp GCCSHHHHHHHTGGGSCHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEETHHHHHHHHHHTTCTT-CCEEEEESCCCSCC-
T ss_pred chhhHHHHHHHhhhcCCchhhHHHHHHHHHHHHhcc-CCCCeEEEEEEcccHHHHHHHHhhCcC-cceEEEEeccccCC-
Confidence 221110 01111245789999999999987 789999999999999999999999998 56666655432110
Q ss_pred cccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhc
Q 003878 658 YHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLC 737 (789)
Q Consensus 658 ~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~ 737 (789)
. ..+ ...+|...+.+. .+|+|+++|++|..||+.++.+++++|++.
T Consensus 153 ------~----~~~------------~~~~~~~~~~~~----------~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~-- 198 (241)
T 3f67_A 153 ------K----SLN------------SPKHPVDIAVDL----------NAPVLGLYGAKDASIPQDTVETMRQALRAA-- 198 (241)
T ss_dssp ------C----CSS------------SCCCHHHHGGGC----------CSCEEEEEETTCTTSCHHHHHHHHHHHHHT--
T ss_pred ------C----ccC------------CccCHHHhhhhc----------CCCEEEEEecCCCCCCHHHHHHHHHHHHHc--
Confidence 0 000 112333334444 679999999999999999999999999987
Q ss_pred cCCCCCCCCCcEEEEEeCCCCcCCCCc------hhhHHHHHHHHHHHHHH
Q 003878 738 TSLENSPQTNPIIGRIERKAGHGVGLP------TQKMIDEAADRYGFMAK 781 (789)
Q Consensus 738 ~~~~~~~~~~~~~l~~~~~~gH~~~~~------~~~~~~~~~~~~~fl~~ 781 (789)
+.++++.+++++||++... .....+....+.+||.+
T Consensus 199 --------~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~fl~~ 240 (241)
T 3f67_A 199 --------NATAEIVVYPEADHAFNADYRASYHEESAKDGWQRMLAWFAQ 240 (241)
T ss_dssp --------TCSEEEEEETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHTT
T ss_pred --------CCCcEEEEECCCCcceecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 7899999999999998532 22234566778888864
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-20 Score=204.79 Aligned_cols=246 Identities=14% Similarity=0.123 Sum_probs=166.3
Q ss_pred CCCcEEEEEEecCCCceEEEEEEEe-cCCC--------------------CCCCCccEEEEEcCCCCccCCCC---CCHH
Q 003878 504 SEFHVHQVFVPSKDGSTKIPMFIVS-KKNI--------------------KLDGSHPCLLYGYGGFNISVTPS---FSVS 559 (789)
Q Consensus 504 ~~~~~~~~~~~s~dg~~~i~~~l~~-p~~~--------------------~~~~~~P~ll~~hGg~~~~~~~~---~~~~ 559 (789)
..+..+.+.+.+.+| +.+.++. |++. ...++.|+||++|||........ |...
T Consensus 60 ~~v~~~dv~~~~~~g---l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~~~g~~~~~~~~~~ 136 (365)
T 3ebl_A 60 EGVSSFDHIIDQSVG---LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSL 136 (365)
T ss_dssp TTEEEEEEEEETTTT---EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTTTSCCTTBHHHHHH
T ss_pred CCCceeeEEecCCCC---ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCccccCCCchhhHHHH
Confidence 345678899998888 5555665 7652 23467899999999865433332 3333
Q ss_pred HHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcC----CCCCC-cEEEEeeChHHHHHHH
Q 003878 560 RTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG----YTQSR-KLCIEGGSNGGLLVGA 634 (789)
Q Consensus 560 ~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~----~~d~~-~i~i~G~S~GG~l~~~ 634 (789)
...+..+.|++|+.+|||++++.. ....++|+.++++||.++. .+|++ ||+|+|+|+||.+++.
T Consensus 137 ~~~la~~~g~~Vv~~dyR~~p~~~-----------~~~~~~D~~~a~~~l~~~~~~~~~~d~~~ri~l~G~S~GG~la~~ 205 (365)
T 3ebl_A 137 CRRFVKLSKGVVVSVNYRRAPEHR-----------YPCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSGGNIAHH 205 (365)
T ss_dssp HHHHHHHHTSEEEEECCCCTTTSC-----------TTHHHHHHHHHHHHHHHCTTTEETTTTEEEEEEEEETHHHHHHHH
T ss_pred HHHHHHHCCCEEEEeeCCCCCCCC-----------CcHHHHHHHHHHHHHHhCchhhhCCCCCCcEEEEeeCccHHHHHH
Confidence 344445349999999999877532 2345799999999999765 57999 9999999999999999
Q ss_pred HHHhCCC---ceeEEEecCCcccccccccccCCccchhhcCCC-CcHHHHHHH-H------------hcCccc-CCCCCC
Q 003878 635 CINQRPD---LFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCS-EEEEEFYWL-I------------KYSPLH-NVRRPW 696 (789)
Q Consensus 635 ~~~~~pd---~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p-~~~~~~~~l-~------------~~sP~~-~v~~~~ 696 (789)
++.+.++ .++++|+.+|+++........ ......+ ......+++ . ..+|+. .....
T Consensus 206 ~a~~~~~~~~~~~g~vl~~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l- 279 (365)
T 3ebl_A 206 VAVRAADEGVKVCGNILLNAMFGGTERTESE-----RRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRL- 279 (365)
T ss_dssp HHHHHHHTTCCCCEEEEESCCCCCSSCCHHH-----HHHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTCCCC-
T ss_pred HHHHHHhcCCceeeEEEEccccCCCcCChhh-----hhcCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCcchhh-
Confidence 9987766 799999999998864332100 0000000 001111111 1 112332 11111
Q ss_pred CCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCC--chhhHHHHHHH
Q 003878 697 EQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL--PTQKMIDEAAD 774 (789)
Q Consensus 697 ~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~--~~~~~~~~~~~ 774 (789)
.....||+||+||++|..+ .++.+++++|++. |.+++++++++++|++.. ...+..+.++.
T Consensus 280 -----~~~~~pP~Li~~G~~D~l~--~~~~~~~~~L~~~----------g~~v~l~~~~g~~H~f~~~~~~~~~~~~~~~ 342 (365)
T 3ebl_A 280 -----GGLPFAKSLIIVSGLDLTC--DRQLAYADALRED----------GHHVKVVQCENATVGFYLLPNTVHYHEVMEE 342 (365)
T ss_dssp -----TTSCCCCEEEEEETTSTTH--HHHHHHHHHHHHT----------TCCEEEEEETTCCTTGGGSSCSHHHHHHHHH
T ss_pred -----ccCCCCCEEEEEcCcccch--hHHHHHHHHHHHC----------CCCEEEEEECCCcEEEeccCCCHHHHHHHHH
Confidence 0003589999999999654 4678999999988 899999999999998752 12334678889
Q ss_pred HHHHHHHHhCCC
Q 003878 775 RYGFMAKMLGAS 786 (789)
Q Consensus 775 ~~~fl~~~l~~~ 786 (789)
+.+||.++++.+
T Consensus 343 i~~Fl~~~~~~~ 354 (365)
T 3ebl_A 343 ISDFLNANLYYG 354 (365)
T ss_dssp HHHHHHHHCC--
T ss_pred HHHHHHHhhhcc
Confidence 999999998754
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-21 Score=205.29 Aligned_cols=236 Identities=17% Similarity=0.107 Sum_probs=171.8
Q ss_pred CCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCc-cCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCC
Q 003878 505 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI-SVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 583 (789)
Q Consensus 505 ~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~-~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g 583 (789)
.+..+.+.+++.|| .+|+++++.|++ ++.|+||++|||... .....+......+..+.|++|+.+|||++++..
T Consensus 57 ~~~~~~~~i~~~~G-~~i~~~~~~P~~----~~~p~vv~~HGgG~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~ 131 (317)
T 3qh4_A 57 GVAVADDVVTGEAG-RPVPVRIYRAAP----TPAPVVVYCHAGGFALGNLDTDHRQCLELARRARCAVVSVDYRLAPEHP 131 (317)
T ss_dssp CCEEEEEEEECTTS-CEEEEEEEECSC----SSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSC
T ss_pred cceEEEEEecCCCC-CeEEEEEEecCC----CCCcEEEEECCCcCccCChHHHHHHHHHHHHHcCCEEEEecCCCCCCCC
Confidence 46678899999999 999999999986 578999999997533 333445555556665579999999999887642
Q ss_pred hhHHhcccccCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhCCC----ceeEEEecCCccccc
Q 003878 584 EEWHKGGALAKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQRPD----LFGCALAHVGVMDML 656 (789)
Q Consensus 584 ~~~~~~~~~~~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~pd----~f~a~v~~~p~~d~~ 656 (789)
....++|+.++++|+.++ -.+|++||+|+|+|+||.+++.++.+.|+ .++++++.+|++|..
T Consensus 132 -----------~p~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~ 200 (317)
T 3qh4_A 132 -----------YPAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIFQLLHQPVLDDR 200 (317)
T ss_dssp -----------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTSSCCCCEEEEESCCCCSS
T ss_pred -----------CchHHHHHHHHHHHHHhhHHhhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCeeEEEEECceecCC
Confidence 245678999999999985 34689999999999999999999987665 489999999999875
Q ss_pred ccccccCCccchhhcCC-C-CcHHH----HHHHH-------hcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcH
Q 003878 657 RYHKFTIGHAWVSDFGC-S-EEEEE----FYWLI-------KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPL 723 (789)
Q Consensus 657 ~~~~~~~~~~~~~e~g~-p-~~~~~----~~~l~-------~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~ 723 (789)
.... ..++.. + ..... +..+. ..+|.....- ...||+||+||+.|..++
T Consensus 201 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l---------~~lpP~li~~G~~D~~~~-- 262 (317)
T 3qh4_A 201 PTAS-------RSEFRATPAFDGEAASLMWRHYLAGQTPSPESVPGRRGQL---------AGLPATLITCGEIDPFRD-- 262 (317)
T ss_dssp CCHH-------HHHTTTCSSSCHHHHHHHHHHHHTTCCCCTTTCGGGCSCC---------TTCCCEEEEEEEESTTHH--
T ss_pred CCcC-------HHHhcCCCCcCHHHHHHHHHHhcCCCCCCcccCCCccccc---------CCCCceeEEecCcCCCch--
Confidence 2110 011110 1 11111 11111 1123222111 135899999999999875
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCC---chhhHHHHHHHHHHHHHHHhC
Q 003878 724 HSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL---PTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 724 ~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~---~~~~~~~~~~~~~~fl~~~l~ 784 (789)
++.+++++|++. |.+++++++++++|++.. ......+..+.+.+||.++|+
T Consensus 263 ~~~~~a~~l~~~----------g~~~~l~~~~g~~H~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 316 (317)
T 3qh4_A 263 EVLDYAQRLLGA----------GVSTELHIFPRACHGFDSLLPEWTTSQRLFAMQGHALADAFY 316 (317)
T ss_dssp HHHHHHHHHHHT----------TCCEEEEEEEEEETTHHHHCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHc----------CCCEEEEEeCCCccchhhhcCCchHHHHHHHHHHHHHHHHhC
Confidence 889999999988 899999999999998532 223345778889999999875
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-21 Score=202.89 Aligned_cols=233 Identities=12% Similarity=0.009 Sum_probs=167.4
Q ss_pred EEEEEEecCCCceEEEEEEEecCCC---CCCCCccEEEEEcCCCCccCC-CCCCHHHHHHHHcCCeEEEEEeecCCCCCC
Q 003878 508 VHQVFVPSKDGSTKIPMFIVSKKNI---KLDGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGGEYG 583 (789)
Q Consensus 508 ~~~~~~~s~dg~~~i~~~l~~p~~~---~~~~~~P~ll~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g 583 (789)
.+.+.+...+| .++++.++ |+.. ...++.|+||++|||...... ..|. .+...|+++||.|+++|+||.++.+
T Consensus 19 ~~~v~~~~~~g-~~~~~~~y-p~~~~~~~~~~~~p~vv~lHGgg~~~~~~~~~~-~~~~~l~~~G~~v~~~d~~g~~~~~ 95 (283)
T 3bjr_A 19 GMQVIKQKLTA-TCAQLTGY-LHQPDTNAHQTNLPAIIIVPGGSYTHIPVAQAE-SLAMAFAGHGYQAFYLEYTLLTDQQ 95 (283)
T ss_dssp SSEEEEEECTT-SSCEEEEE-EC--------CCEEEEEEECCSTTTCCCHHHHH-HHHHHHHTTTCEEEEEECCCTTTCS
T ss_pred CcceEEeecCC-CceeEEEe-cCCccccccCCCCcEEEEECCCccccCCccccH-HHHHHHHhCCcEEEEEeccCCCccc
Confidence 45677888899 88999988 7652 135688999999997532222 2232 2345566699999999999977642
Q ss_pred hhHHhcccccCCcchHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhCCCc-------------eeEEE
Q 003878 584 EEWHKGGALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQRPDL-------------FGCAL 647 (789)
Q Consensus 584 ~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~pd~-------------f~a~v 647 (789)
........|+.+++++|.+.. .+|+++|+++|+|+||.+++.++.++|+. ++++|
T Consensus 96 ---------~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~v 166 (283)
T 3bjr_A 96 ---------PLGLAPVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPNNVV 166 (283)
T ss_dssp ---------SCBTHHHHHHHHHHHHHHHSHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTTHHHHHHTCCHHHHCCSSEE
T ss_pred ---------cCchhHHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHHHHHHHHHHhhccccchhhcCCCcCCCCccEEE
Confidence 122345689999999998763 36888999999999999999999999987 89999
Q ss_pred ecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHH
Q 003878 648 AHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLK 727 (789)
Q Consensus 648 ~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~ 727 (789)
+.+|+.++........ ..+...++ .+..++|...+.+. .+|+|+++|++|..||+.++.+
T Consensus 167 ~~~p~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~----------~~P~lii~G~~D~~~p~~~~~~ 226 (283)
T 3bjr_A 167 LGYPVISPLLGFPKDD-ATLATWTP---------TPNELAADQHVNSD----------NQPTFIWTTADDPIVPATNTLA 226 (283)
T ss_dssp EESCCCCTTSBC---------CCCC---------CGGGGCGGGSCCTT----------CCCEEEEEESCCTTSCTHHHHH
T ss_pred EcCCcccccccccccc-chHHHHHH---------HhHhcCHHHhccCC----------CCCEEEEEcCCCCCCChHHHHH
Confidence 9999887543221100 00101111 12345677666665 7899999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchh-----------hHHHHHHHHHHHHHHH
Q 003878 728 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQ-----------KMIDEAADRYGFMAKM 782 (789)
Q Consensus 728 ~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~-----------~~~~~~~~~~~fl~~~ 782 (789)
++++|+.. +.++++++++++||++..... ...++...+.+||.++
T Consensus 227 ~~~~l~~~----------g~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~i~~fl~~~ 282 (283)
T 3bjr_A 227 YATALATA----------KIPYELHVFKHGPHGLALANAQTAWKPDANQPHVAHWLTLALEWLADN 282 (283)
T ss_dssp HHHHHHHT----------TCCEEEEEECCCSHHHHHHHHHHSCC-------CCHHHHHHHHHHHHT
T ss_pred HHHHHHHC----------CCCeEEEEeCCCCcccccccccccccccccchhHHHHHHHHHHHHhhc
Confidence 99999987 889999999999997643321 1235677888898753
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8e-21 Score=204.44 Aligned_cols=229 Identities=17% Similarity=0.015 Sum_probs=159.6
Q ss_pred EEEEEEEecCCCCCCCCccEEEEEcCCCCccCCC-CCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchH
Q 003878 521 KIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP-SFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCF 599 (789)
Q Consensus 521 ~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~-~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~ 599 (789)
.|+++++.|++ .++.|+||++|||....... .+......+....|++|+.+|||++++.. ....+
T Consensus 66 ~i~~~~~~p~~---~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~-----------~~~~~ 131 (322)
T 3fak_A 66 GCAAEWVRAPG---CQAGKAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYRLAPEHP-----------FPAAV 131 (322)
T ss_dssp TEEEEEEECTT---CCTTCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTSEEEEECCCCTTTSC-----------TTHHH
T ss_pred CeEEEEEeCCC---CCCccEEEEEcCCccccCChHHHHHHHHHHHHhcCCEEEEEeCCCCCCCC-----------CCcHH
Confidence 38889999976 35789999999986443332 22233344444469999999999877542 34467
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc----eeEEEecCCcccccccccccCCccchhhcCCCC
Q 003878 600 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDL----FGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSE 675 (789)
Q Consensus 600 ~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~----f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~ 675 (789)
+|+.++++||.++ .+|++||+|+|+|+||.+++.++.+.|+. ++++|+.+|++|+...............+-...
T Consensus 132 ~D~~~a~~~l~~~-~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~~~~~~~~~~~~~~~~~ 210 (322)
T 3fak_A 132 EDGVAAYRWLLDQ-GFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTNDSFKTRAEADPMVAPG 210 (322)
T ss_dssp HHHHHHHHHHHHH-TCCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTHHHHTTTTCCSCCSS
T ss_pred HHHHHHHHHHHHc-CCCCceEEEEEcCcCHHHHHHHHHHHHhcCCCCceEEEEECCEecCcCCCcCHHHhCccCcccCHH
Confidence 9999999999998 56999999999999999999999887664 999999999998754321000000000000000
Q ss_pred cHHH-HHHH--------HhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCC
Q 003878 676 EEEE-FYWL--------IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQT 746 (789)
Q Consensus 676 ~~~~-~~~l--------~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~ 746 (789)
.... ...+ ...+|+...-. ..||+||+||+.|.. ..++.+++++|++. |
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~----------~~pP~li~~g~~D~~--~~~~~~~~~~l~~~----------g 268 (322)
T 3fak_A 211 GINKMAARYLNGADAKHPYASPNFANLK----------GLPPLLIHVGRDEVL--LDDSIKLDAKAKAD----------G 268 (322)
T ss_dssp HHHHHHHHHHTTSCTTCTTTCGGGSCCT----------TCCCEEEEEETTSTT--HHHHHHHHHHHHHT----------T
T ss_pred HHHHHHHHhcCCCCCCCcccCCCccccc----------CCChHhEEEcCcCcc--HHHHHHHHHHHHHc----------C
Confidence 0000 0001 12355533222 368999999999987 46889999999998 9
Q ss_pred CcEEEEEeCCCCcCCCCc---hhhHHHHHHHHHHHHHHHhCCC
Q 003878 747 NPIIGRIERKAGHGVGLP---TQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 747 ~~~~l~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
.+++++++++++|++... ..+..+..+.+.+||.++|+..
T Consensus 269 ~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~~ 311 (322)
T 3fak_A 269 VKSTLEIWDDMIHVWHAFHPMLPEGKQAIVRVGEFMREQWAAL 311 (322)
T ss_dssp CCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCEEEEEeCCceeehhhccCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999987521 2234577889999999998654
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.85 E-value=9.3e-21 Score=221.41 Aligned_cols=253 Identities=13% Similarity=0.078 Sum_probs=179.4
Q ss_pred CCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCcc----CC-CCCCHHHH---HHHHcCCeEEEEEe
Q 003878 504 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNIS----VT-PSFSVSRT---ILMRHLGAVFCIAN 575 (789)
Q Consensus 504 ~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~----~~-~~~~~~~~---~~l~~~G~~v~~~~ 575 (789)
..+..+.+.+++.|| .+|.++++.|++. ++.|+||+.||..+.. .. ..|..... ++|+++||+|+.+|
T Consensus 21 ~~~~~~~v~i~~~DG-~~L~~~~~~P~~~---~~~P~vl~~hgyg~~~~~~~~~~~~~~~~~~~~~~~la~~Gy~Vv~~D 96 (615)
T 1mpx_A 21 NDYIKREVMIPMRDG-VKLHTVIVLPKGA---KNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQD 96 (615)
T ss_dssp CSEEEEEEEEECTTS-CEEEEEEEEETTC---CSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEE
T ss_pred CCCEEEEEEEECCCC-CEEEEEEEeCCCC---CCeeEEEEEcCCCCccccccccccccccccchhHHHHHhCCeEEEEEC
Confidence 356778899999999 9999999999863 6789999999743321 11 11111111 45556999999999
Q ss_pred ecCCCCCChhHHhccc-----ccCCcchHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEec
Q 003878 576 IRGGGEYGEEWHKGGA-----LAKKQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 649 (789)
Q Consensus 576 ~RG~g~~g~~~~~~~~-----~~~~~~~~~D~~~~~~~L~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~ 649 (789)
+||+|+++..+..... ..++....+|+.++++||.++ ++.| .||+++|+|+||+++++++.++|+.++|+|+.
T Consensus 97 ~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~~-~rv~l~G~S~GG~~al~~a~~~~~~l~a~v~~ 175 (615)
T 1mpx_A 97 VRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN-GKVGMIGSSYEGFTVVMALTNPHPALKVAVPE 175 (615)
T ss_dssp CTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred CCCCCCCCCccccccccccccccccccHHHHHHHHHHHHHhcCCCCC-CeEEEEecCHHHHHHHHHhhcCCCceEEEEec
Confidence 9999888766543311 112227789999999999998 7776 59999999999999999998889999999999
Q ss_pred CCcccccc-c-c-ccc---C-Cccchhh----------------------------------c------------CCCCc
Q 003878 650 VGVMDMLR-Y-H-KFT---I-GHAWVSD----------------------------------F------------GCSEE 676 (789)
Q Consensus 650 ~p~~d~~~-~-~-~~~---~-~~~~~~e----------------------------------~------------g~p~~ 676 (789)
+|+.|+.. . . ... . ...|... + ..|..
T Consensus 176 ~~~~d~~~~~~~~~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 255 (615)
T 1mpx_A 176 SPMIDGWMGDDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAAY 255 (615)
T ss_dssp SCCCCTTTTSSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCSS
T ss_pred CCccccccccccccCCeehhhhHHHHHHhhcccCCcccccccchhHHHHHhhcCCccchhhhhccccchHHHHHHhCCCc
Confidence 99999543 1 1 000 0 0001100 0 00100
Q ss_pred HHHHHHHHhcCcccCCCC--CCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCc---EEE
Q 003878 677 EEEFYWLIKYSPLHNVRR--PWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNP---IIG 751 (789)
Q Consensus 677 ~~~~~~l~~~sP~~~v~~--~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~---~~l 751 (789)
-+++++.||..++++ + ..|+|++||.+|.+ +..++.+++++|++. |.| ..|
T Consensus 256 ---d~~w~~~Sp~~~~~~~~I----------~~P~Lii~G~~D~~-~~~~~~~~~~aL~~~----------g~p~~~~~l 311 (615)
T 1mpx_A 256 ---DAFWQEQALDKVMARTPL----------KVPTMWLQGLWDQE-DMWGAIHSYAAMEPR----------DKRNTLNYL 311 (615)
T ss_dssp ---CHHHHTTCHHHHHHTSCC----------CSCEEEEEETTCSS-CSSHHHHHHHHHGGG----------CTTSSSEEE
T ss_pred ---ChhhhhcChhhhhhccCC----------CCCEEEeecccCcc-ccccHHHHHHHHHhh----------cCCCcCCEE
Confidence 123566788877777 7 78999999999998 889999999999987 544 889
Q ss_pred EEeCCCCcCCCC-----c-------hhhHHHHHHHHHHHHHHHhCCC
Q 003878 752 RIERKAGHGVGL-----P-------TQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 752 ~~~~~~gH~~~~-----~-------~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
.+.|. +|+... . ..........+++||+++|+..
T Consensus 312 vigp~-~H~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~wfd~~Lkg~ 357 (615)
T 1mpx_A 312 VMGPW-RHSQVNYDGSALGALNFEGDTARQFRHDVLRPFFDQYLVDG 357 (615)
T ss_dssp EEESC-CTTGGGSCCSEETTEECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred EECCC-CCCCccccccccCccccCcccchhhhhhHHHHHHHHHhcCC
Confidence 99887 697511 0 1111222567899999999754
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-20 Score=201.44 Aligned_cols=237 Identities=14% Similarity=0.086 Sum_probs=164.7
Q ss_pred CCcEEEEEEecCCCceEEEEEEEecCCCC--------------CCCCccEEEEEcCCCCccCCCC---CCHHHHHHHHcC
Q 003878 505 EFHVHQVFVPSKDGSTKIPMFIVSKKNIK--------------LDGSHPCLLYGYGGFNISVTPS---FSVSRTILMRHL 567 (789)
Q Consensus 505 ~~~~~~~~~~s~dg~~~i~~~l~~p~~~~--------------~~~~~P~ll~~hGg~~~~~~~~---~~~~~~~~l~~~ 567 (789)
.+..+.+.+.+ + ..+++.++.|++.. ..++.|+||++|||........ |......+..++
T Consensus 69 ~v~~~dv~~~~--~-~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~~~g~~~~~~~~~~~~~la~~~ 145 (351)
T 2zsh_A 69 GVFSFDVLIDR--R-INLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLC 145 (351)
T ss_dssp TEEEEEEEEET--T-TTEEEEEEEECCTTCSSCCCTTSTTCCCCSSSCEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHH
T ss_pred CceEEEEEecC--C-CCeEEEEEecCCccccccccccccccccCCCCceEEEEECCCcCcCCCCcchhHHHHHHHHHHHc
Confidence 44566777765 4 56888999998742 2467899999999765433322 443334444258
Q ss_pred CeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcC----CCCCC-cEEEEeeChHHHHHHHHHHhCCC-
Q 003878 568 GAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG----YTQSR-KLCIEGGSNGGLLVGACINQRPD- 641 (789)
Q Consensus 568 G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~----~~d~~-~i~i~G~S~GG~l~~~~~~~~pd- 641 (789)
||+|+.+|+||+++.. ....++|+.++++||.++. .+|++ ||+++|+|+||.+++.++.++|+
T Consensus 146 g~~vv~~d~rg~~~~~-----------~~~~~~D~~~~~~~l~~~~~~~~~~d~~~~i~l~G~S~GG~la~~~a~~~~~~ 214 (351)
T 2zsh_A 146 KCVVVSVNYRRAPENP-----------YPCAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGES 214 (351)
T ss_dssp TSEEEEECCCCTTTSC-----------TTHHHHHHHHHHHHHHTCGGGCCTTTSSCEEEEEEETHHHHHHHHHHHHHHTT
T ss_pred CCEEEEecCCCCCCCC-----------CchhHHHHHHHHHHHHhCchhhcCCCCCCcEEEEEeCcCHHHHHHHHHHhhcc
Confidence 9999999999977642 2356899999999999864 47899 99999999999999999999898
Q ss_pred --ceeEEEecCCcccccccccccCCccchhhcCCC-CcHHHHH-HHHhcC------------ccc----CCCCCCCCCCC
Q 003878 642 --LFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCS-EEEEEFY-WLIKYS------------PLH----NVRRPWEQNPD 701 (789)
Q Consensus 642 --~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p-~~~~~~~-~l~~~s------------P~~----~v~~~~~~~~~ 701 (789)
+++++|+.+|+++...... ......+.+ ....... .+..+. |+. .+.++
T Consensus 215 ~~~v~~~vl~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i------ 283 (351)
T 2zsh_A 215 GIDVLGNILLNPMFGGNERTE-----SEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGV------ 283 (351)
T ss_dssp TCCCCEEEEESCCCCCSSCCH-----HHHHHTTTSSCCHHHHHHHHHHHSCTTCCTTSTTTCTTSTTSCCCTTC------
T ss_pred CCCeeEEEEECCccCCCcCCh-----hhhhcCCCcccCHHHHHHHHHHhCCCCCCCCCcccCCCCCCccchhhC------
Confidence 8999999999887543211 000111111 0111111 112222 221 11111
Q ss_pred CCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCc--hhhHHHHHHHHHHHH
Q 003878 702 KPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP--TQKMIDEAADRYGFM 779 (789)
Q Consensus 702 ~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~--~~~~~~~~~~~~~fl 779 (789)
..||+||++|++|..++ ++.+++++|++. +.++++++++++||++... .....+..+.+.+||
T Consensus 284 ---~~pP~Lii~G~~D~~~~--~~~~~~~~l~~~----------g~~~~~~~~~g~gH~~~~~~~~~~~~~~~~~i~~Fl 348 (351)
T 2zsh_A 284 ---SFPKSLVVVAGLDLIRD--WQLAYAEGLKKA----------GQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFV 348 (351)
T ss_dssp ---CCCEEEEEEETTSTTHH--HHHHHHHHHHHT----------TCCEEEEEETTCCTTTTSSSCSHHHHHHHHHHHHHH
T ss_pred ---CCCCEEEEEcCCCcchH--HHHHHHHHHHHc----------CCCEEEEEECCCcEEEEecCCCHHHHHHHHHHHHHh
Confidence 24799999999999876 778899999987 8899999999999987641 123356777888998
Q ss_pred HH
Q 003878 780 AK 781 (789)
Q Consensus 780 ~~ 781 (789)
.+
T Consensus 349 ~~ 350 (351)
T 2zsh_A 349 NA 350 (351)
T ss_dssp HC
T ss_pred cC
Confidence 64
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-21 Score=201.57 Aligned_cols=247 Identities=14% Similarity=0.113 Sum_probs=163.3
Q ss_pred EEEEEEec-CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCC-----
Q 003878 508 VHQVFVPS-KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGE----- 581 (789)
Q Consensus 508 ~~~~~~~s-~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~----- 581 (789)
.+++.+.+ .+| .++++.++.|++..+.++.|+||++||+.+.............+++++|++|+++|.++.|.
T Consensus 15 ~~~~~~~s~~~g-~~~~~~v~~P~~~~~~~~~P~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~~g~~~~~~ 93 (280)
T 3ls2_A 15 HKQYTHSAVSTH-CTMRFAVFLPPGASESNKVPVLYWLSGLTCTDENFMQKAGAFKKAAELGIAIVAPDTSPRGDNVPNE 93 (280)
T ss_dssp EEEEEEEETTTT-EEEEEEEEECTTCBTTBCEEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEECCSSCCSTTSCCC
T ss_pred EEEEEEechhcC-CceEEEEEcCCCCCCCCCcCEEEEeCCCCCChhhhhcchhHHHHHhhCCeEEEEeCCcccccccccc
Confidence 45566655 578 99999999999876678899999999986654321110112456666899999999764331
Q ss_pred ------CChhHHhccccc--CCcchH-HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 582 ------YGEEWHKGGALA--KKQNCF-DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 582 ------~g~~~~~~~~~~--~~~~~~-~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
.|..|+...... .....+ +++.+.+..+++..+..++|++|+|+|+||++++.++.++|++|+++++.+|+
T Consensus 94 ~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~s~~ 173 (280)
T 3ls2_A 94 DSYDFAQGAGFYVNATQAPYNTHFNMYDYVVNELPALIEQHFPVTSTKAISGHSMGGHGALMIALKNPQDYVSASAFSPI 173 (280)
T ss_dssp SCTTSSTTCCTTCBCCSTTTTTTCBHHHHHHTHHHHHHHHHSSEEEEEEEEEBTHHHHHHHHHHHHSTTTCSCEEEESCC
T ss_pred cccccccCCccccccccccccccccHHHHHHHHHHHHHHhhCCCCCCeEEEEECHHHHHHHHHHHhCchhheEEEEecCc
Confidence 122222221111 011122 33333333333333434589999999999999999999999999999999998
Q ss_pred ccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCC--CCeEEEEecCCCCCCCcHH-HHHHH
Q 003878 653 MDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQ--YPSTLLLTADHDDRVVPLH-SLKLL 729 (789)
Q Consensus 653 ~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~--~pp~Li~~g~~D~~V~~~~-~~~~~ 729 (789)
+++....... ..+...+|.. .+. +..++|...+.+. .. .+|+|++||++|..|+... +.+++
T Consensus 174 ~~~~~~~~~~--~~~~~~~g~~--~~~---~~~~~~~~~~~~~--------~~~~~~p~li~~G~~D~~v~~~~~~~~~~ 238 (280)
T 3ls2_A 174 VNPINCPWGV--KAFTGYLGAD--KTT---WAQYDSCKLMAKA--------EQSNYLPMLVSQGDADNFLDEQLKPQNLV 238 (280)
T ss_dssp SCGGGSHHHH--HHHHHHHCSC--GGG---TGGGCHHHHHHTC--------CGGGCCCEEEEEETTCTTCCCCCCHHHHH
T ss_pred cCcccCcchh--hHHHhhcCch--HHH---HHhcCHHHHHHhc--------cccCCCcEEEEEeCCCcccCCchhHHHHH
Confidence 8864321000 0011123321 111 1344555544443 11 5799999999999999854 88999
Q ss_pred HHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 730 ATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 730 ~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
++|++. |.+++++++++++|.+.. ......+.++|+.++|.
T Consensus 239 ~~l~~~----------g~~~~~~~~~g~~H~~~~----~~~~~~~~~~~~~~~l~ 279 (280)
T 3ls2_A 239 AVAKQK----------DYPLTLEMQTGYDHSYFF----ISSFIDQHLVFHHQYLS 279 (280)
T ss_dssp HHHHHH----------TCCEEEEEETTCCSSHHH----HHHHHHHHHHHHHHHHC
T ss_pred HHHHHh----------CCCceEEEeCCCCCchhh----HHHHHHHHHHHHHHHhc
Confidence 999998 899999999999998632 23567788999998875
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=99.85 E-value=9.3e-21 Score=205.73 Aligned_cols=239 Identities=16% Similarity=0.143 Sum_probs=171.6
Q ss_pred CCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCC
Q 003878 504 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 583 (789)
Q Consensus 504 ~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g 583 (789)
..+..+.+.+++.|| .+|+++++.|++ .++.|+||++||+.+.... |.. ...++. +||.|+++|+||.|+.+
T Consensus 78 ~~~~~~~~~~~~~~g-~~l~~~~~~P~~---~~~~p~vv~~HG~g~~~~~--~~~-~~~~~~-~G~~v~~~D~rG~g~s~ 149 (346)
T 3fcy_A 78 SFAECYDLYFTGVRG-ARIHAKYIKPKT---EGKHPALIRFHGYSSNSGD--WND-KLNYVA-AGFTVVAMDVRGQGGQS 149 (346)
T ss_dssp TTEEEEEEEEECGGG-CEEEEEEEEESC---SSCEEEEEEECCTTCCSCC--SGG-GHHHHT-TTCEEEEECCTTSSSSC
T ss_pred CceEEEEEEEEcCCC-CEEEEEEEecCC---CCCcCEEEEECCCCCCCCC--hhh-hhHHHh-CCcEEEEEcCCCCCCCC
Confidence 356778899999999 999999999987 4678999999998776543 332 235555 99999999999988765
Q ss_pred hhHHhc-----------ccc-cC----CcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEE
Q 003878 584 EEWHKG-----------GAL-AK----KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCAL 647 (789)
Q Consensus 584 ~~~~~~-----------~~~-~~----~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v 647 (789)
...... +.. .. ....++|+.++++++.....+|++||+++|+|+||.+++.++.++|+ ++++|
T Consensus 150 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~D~~~a~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p~-v~~~v 228 (346)
T 3fcy_A 150 QDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPR-VRKVV 228 (346)
T ss_dssp CCCCCCSSCCSBCSSSTTTTSCGGGCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTT-CCEEE
T ss_pred CCCcccCCCCcCcceeccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcEEEEEcCHHHHHHHHHHHhCcc-ccEEE
Confidence 432211 000 00 01236899999999999888899999999999999999999999998 99999
Q ss_pred ecCCcccccc-ccccc-CCc------cchhhcCCC---CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCC
Q 003878 648 AHVGVMDMLR-YHKFT-IGH------AWVSDFGCS---EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADH 716 (789)
Q Consensus 648 ~~~p~~d~~~-~~~~~-~~~------~~~~e~g~p---~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~ 716 (789)
+.+|+++... ..... ... .|.. +..| ...+.+..+..+++...+.++ .+|+|+++|++
T Consensus 229 l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~i----------~~P~lii~G~~ 297 (346)
T 3fcy_A 229 SEYPFLSDYKRVWDLDLAKNAYQEITDYFR-LFDPRHERENEVFTKLGYIDVKNLAKRI----------KGDVLMCVGLM 297 (346)
T ss_dssp EESCSSCCHHHHHHTTCCCGGGHHHHHHHH-HHCTTCTTHHHHHHHHGGGCHHHHGGGC----------CSEEEEEEETT
T ss_pred ECCCcccCHHHHhhccccccchHHHHHHHH-hcCCCcchHHHHHHHhCcccHHHHHHhc----------CCCEEEEeeCC
Confidence 9999765321 11111 000 0111 1122 223344445555555566665 68999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 717 DDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 717 D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
|..||+.++.++++++. .++++.+++++||++.. +..+.+.+||.+
T Consensus 298 D~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~gH~~~~------~~~~~i~~fl~~ 343 (346)
T 3fcy_A 298 DQVCPPSTVFAAYNNIQ-------------SKKDIKVYPDYGHEPMR------GFGDLAMQFMLE 343 (346)
T ss_dssp CSSSCHHHHHHHHTTCC-------------SSEEEEEETTCCSSCCT------THHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHhcC-------------CCcEEEEeCCCCCcCHH------HHHHHHHHHHHH
Confidence 99999998877776543 26799999999999861 335577888875
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=220.22 Aligned_cols=251 Identities=14% Similarity=0.084 Sum_probs=179.3
Q ss_pred CCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccC--CCCCC-----HHH--H-HHHHcCCeEEEEE
Q 003878 505 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV--TPSFS-----VSR--T-ILMRHLGAVFCIA 574 (789)
Q Consensus 505 ~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~--~~~~~-----~~~--~-~~l~~~G~~v~~~ 574 (789)
.+..+.+.+++.|| .+|.++++.|++. ++.|+||+.||. +... ...+. ... . ++|+++||+|+.+
T Consensus 34 ~~~~~~v~i~~~DG-~~L~~~l~~P~~~---~~~PvIl~~hpy-g~~~~~~~~~~~~~~~~~~~~~~~~la~~GyaVv~~ 108 (652)
T 2b9v_A 34 DYIKREVMVPMRDG-VKLYTVIVIPKNA---RNAPILLTRTPY-NAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQ 108 (652)
T ss_dssp SEEEEEEEEECTTS-CEEEEEEEEETTC---CSEEEEEEEESS-CHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEE
T ss_pred CcEEEEEEEECCCC-cEEEEEEEecCCC---CCccEEEEECCC-CCCcccccccccccccccccchHHHHHhCCCEEEEE
Confidence 46678899999999 9999999999863 678999999863 3221 11111 111 1 4555699999999
Q ss_pred eecCCCCCChhHHhccc-----ccCCcchHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEe
Q 003878 575 NIRGGGEYGEEWHKGGA-----LAKKQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA 648 (789)
Q Consensus 575 ~~RG~g~~g~~~~~~~~-----~~~~~~~~~D~~~~~~~L~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~ 648 (789)
|+||+|+++..|..... ...+....+|+.++++||.++ ++.| .||+++|+|+||+++++++.++|+.++|+|+
T Consensus 109 D~RG~g~S~g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~d-~rvgl~G~SyGG~~al~~a~~~~~~lka~v~ 187 (652)
T 2b9v_A 109 DIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESN-GRVGMTGSSYEGFTVVMALLDPHPALKVAAP 187 (652)
T ss_dssp ECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEE-EEEEEEEEEHHHHHHHHHHTSCCTTEEEEEE
T ss_pred ecCcCCCCCCcccccccccccccccccchhhHHHHHHHHHHhcCCCCC-CCEEEEecCHHHHHHHHHHhcCCCceEEEEe
Confidence 99999988876644321 112237889999999999999 8887 5999999999999999999988999999999
Q ss_pred cCCcccccc-cccccCCc------cchhh------------------c----------------------------CCCC
Q 003878 649 HVGVMDMLR-YHKFTIGH------AWVSD------------------F----------------------------GCSE 675 (789)
Q Consensus 649 ~~p~~d~~~-~~~~~~~~------~~~~e------------------~----------------------------g~p~ 675 (789)
.+|+.|+.. ......+. .|... | +.|.
T Consensus 188 ~~~~~d~~~~d~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 267 (652)
T 2b9v_A 188 ESPMVDGWMGDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHPA 267 (652)
T ss_dssp EEECCCTTTBSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHHCCS
T ss_pred cccccccccccceecCCchhhhhHHHHHHhhhcccCcccccccchHHHHHHhhcCchhhHHHhhccccchHHHHHHhCCC
Confidence 999999753 11000000 11100 0 0010
Q ss_pred cHHHHHHHHhcCcccCCCC--CCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCC--CcEEE
Q 003878 676 EEEEFYWLIKYSPLHNVRR--PWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQT--NPIIG 751 (789)
Q Consensus 676 ~~~~~~~l~~~sP~~~v~~--~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~l 751 (789)
. -+++++.||..++++ + ..|+|++||.+|.+ +..++.+++++|++. + .+..|
T Consensus 268 ~---d~yw~~~Sp~~~~~~~~I----------~~PvLiv~G~~D~~-~~~~~~~~~~aL~~~----------g~~~~~~l 323 (652)
T 2b9v_A 268 Y---DAFWQGQALDKILAQRKP----------TVPMLWEQGLWDQE-DMWGAIHAWQALKDA----------DVKAPNTL 323 (652)
T ss_dssp S---SHHHHTTCHHHHHHHHCC----------CSCEEEEEETTCSS-CSSHHHHHHHHHHHT----------TCSSCEEE
T ss_pred C---ChHHhcCChhhhhhcCCC----------CCCEEEEeecCCcc-ccccHHHHHHHHHhc----------CCCCCCEE
Confidence 0 022456688777777 6 78999999999998 678999999999987 6 88899
Q ss_pred EEeCCCCcCCCC-----c------hh-hHHHHHHHHHHHHHHHhCCC
Q 003878 752 RIERKAGHGVGL-----P------TQ-KMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 752 ~~~~~~gH~~~~-----~------~~-~~~~~~~~~~~fl~~~l~~~ 786 (789)
.+.|. +|+... . .. ........+++||+++|+..
T Consensus 324 vigp~-~H~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~wfd~~Lkg~ 369 (652)
T 2b9v_A 324 VMGPW-RHSGVNYNGSTLGPLEFEGDTAHQYRRDVFRPFFDEYLKPG 369 (652)
T ss_dssp EEESC-CTTGGGSCCSEETTEECSSCHHHHHHHHTHHHHHHHHHSTT
T ss_pred EECCC-CCCCcccccccCCccccccccchhhhhhHHHHHHHHHhCCC
Confidence 99876 797521 0 01 11223577899999999754
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.1e-21 Score=200.96 Aligned_cols=247 Identities=16% Similarity=0.093 Sum_probs=164.5
Q ss_pred cEEEEEEec-CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCC--CC
Q 003878 507 HVHQVFVPS-KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGE--YG 583 (789)
Q Consensus 507 ~~~~~~~~s-~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~--~g 583 (789)
..+.+.+.+ .+| .++++.++.|++....++.|+||++||+.+.............+++++|++|+++|.|+.|. .+
T Consensus 16 ~~~~~~~~s~~~g-~~~~~~v~~P~~~~~~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~pd~~~~g~~~~~ 94 (280)
T 3i6y_A 16 WHKQYSHVSNTLN-CAMRFAIYLPPQASTGAKVPVLYWLSGLTCSDENFMQKAGAQRLAAELGIAIVAPDTSPRGEGVAD 94 (280)
T ss_dssp EEEEEEEEETTTT-EEEEEEEEECGGGGTTCCEEEEEEECCTTCCSSHHHHHSCCHHHHHHHTCEEEEECSSCCSTTCCC
T ss_pred cEEEEEEeccccC-CeeEEEEEeCCCCCCCCCccEEEEecCCCCChhHHhhcccHHHHHhhCCeEEEEeCCcccccccCc
Confidence 345555555 578 99999999999866678899999999987654321110013456666899999999875432 11
Q ss_pred ---------hhHHhcccccC--CcchHHH-HH-HHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecC
Q 003878 584 ---------EEWHKGGALAK--KQNCFDD-FI-SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV 650 (789)
Q Consensus 584 ---------~~~~~~~~~~~--~~~~~~D-~~-~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~ 650 (789)
..|+....... ....+.+ +. +.+.++.+..-+ ++|++|+|+|+||++++.++.++|++|+++|+.+
T Consensus 95 ~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s 173 (280)
T 3i6y_A 95 DEGYDLGQGAGFYVNATQAPWNRHYQMYDYVVNELPELIESMFPV-SDKRAIAGHSMGGHGALTIALRNPERYQSVSAFS 173 (280)
T ss_dssp CSSTTSSTTCCTTCBCCSTTGGGTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEETHHHHHHHHHHHHCTTTCSCEEEES
T ss_pred ccccccccCccccccccCCCccchhhHHHHHHHHHHHHHHHhCCC-CCCeEEEEECHHHHHHHHHHHhCCccccEEEEeC
Confidence 11221111100 0112222 32 334444444323 6899999999999999999999999999999999
Q ss_pred CcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHH-HHHHH
Q 003878 651 GVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH-SLKLL 729 (789)
Q Consensus 651 p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~-~~~~~ 729 (789)
|++++..... . ...+...+|.. ++. +..++|...+... ...+|+|++||++|..|+... +.+++
T Consensus 174 ~~~~~~~~~~-~-~~~~~~~~~~~--~~~---~~~~~~~~~~~~~--------~~~~P~li~~G~~D~~v~~~~~~~~~~ 238 (280)
T 3i6y_A 174 PINNPVNCPW-G-QKAFTAYLGKD--TDT---WREYDASLLMRAA--------KQYVPALVDQGEADNFLAEQLKPEVLE 238 (280)
T ss_dssp CCCCGGGSHH-H-HHHHHHHHCSC--GGG---TGGGCHHHHHHHC--------SSCCCEEEEEETTCTTHHHHTCHHHHH
T ss_pred CccccccCch-H-HHHHHHhcCCc--hHH---HHhcCHHHHHHhc--------CCCccEEEEEeCCCccccchhhHHHHH
Confidence 9888643210 0 00111122321 111 1345565555443 114799999999999998755 89999
Q ss_pred HHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 730 ATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 730 ~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
++|++. |.++++++++++||.+. ...+...+.++|+.++|+
T Consensus 239 ~~l~~~----------g~~~~~~~~~g~~H~~~----~~~~~~~~~l~~~~~~l~ 279 (280)
T 3i6y_A 239 AAASSN----------NYPLELRSHEGYDHSYY----FIASFIEDHLRFHSNYLN 279 (280)
T ss_dssp HHHHHT----------TCCEEEEEETTCCSSHH----HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHc----------CCCceEEEeCCCCccHH----HHHHhHHHHHHHHHhhcc
Confidence 999988 89999999999999862 234567788999999885
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-21 Score=199.27 Aligned_cols=247 Identities=12% Similarity=0.074 Sum_probs=165.9
Q ss_pred cEEEEEEec-CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCCh-
Q 003878 507 HVHQVFVPS-KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE- 584 (789)
Q Consensus 507 ~~~~~~~~s-~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~- 584 (789)
..+.+.+.+ .+| .++++.++.|++.. .++.|+||++||+.+.............+++++|++|+++|.||.|....
T Consensus 14 ~~~~~~~~s~~~g-~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~g~G~s~~~ 91 (278)
T 3e4d_A 14 MQGVFSHQSETLK-SEMTFAVYVPPKAI-HEPCPVVWYLSGLTCTHANVMEKGEYRRMASELGLVVVCPDTSPRGNDVPD 91 (278)
T ss_dssp EEEEEEEEETTTT-EEEEEEEEECGGGG-TSCEEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEECCSSCCSTTSCC
T ss_pred cEEEEEEeccccC-CcceEEEEcCCCCC-CCCCCEEEEEcCCCCCccchhhcccHHHHHhhCCeEEEecCCcccCccccc
Confidence 345555544 578 99999999998754 57899999999987654321110013456665799999999998664321
Q ss_pred ---hH--------Hhccccc--CCcchHHHHH--HHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEec
Q 003878 585 ---EW--------HKGGALA--KKQNCFDDFI--SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 649 (789)
Q Consensus 585 ---~~--------~~~~~~~--~~~~~~~D~~--~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~ 649 (789)
.| +...... .....+.+.+ ++++++.+..-+|+++|+++|+|+||.+++.++.++|++|+++|+.
T Consensus 92 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~ 171 (278)
T 3e4d_A 92 ELTNWQMGKGAGFYLDATEEPWSEHYQMYSYVTEELPALIGQHFRADMSRQSIFGHSMGGHGAMTIALKNPERFKSCSAF 171 (278)
T ss_dssp CTTCTTSBTTBCTTSBCCSTTTTTTCBHHHHHHTHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSCEEEE
T ss_pred ccccccccCCccccccCCcCcccchhhHHHHHHHHHHHHHHhhcCCCcCCeEEEEEChHHHHHHHHHHhCCcccceEEEe
Confidence 11 1111110 0111233333 3566666664578899999999999999999999999999999999
Q ss_pred CCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHH-HHHH
Q 003878 650 VGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH-SLKL 728 (789)
Q Consensus 650 ~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~-~~~~ 728 (789)
+|++++..... . ...+...+|... +. +..++|...+... ...+|+|++||++|..|+... +.++
T Consensus 172 ~~~~~~~~~~~-~-~~~~~~~~~~~~--~~---~~~~~~~~~~~~~--------~~~~p~li~~G~~D~~v~~~~~~~~~ 236 (278)
T 3e4d_A 172 APIVAPSSADW-S-EPALEKYLGADR--AA---WRRYDACSLVEDG--------ARFPEFLIDQGKADSFLEKGLRPWLF 236 (278)
T ss_dssp SCCSCGGGCTT-T-HHHHHHHHCSCG--GG---GGGGCHHHHHHTT--------CCCSEEEEEEETTCTTHHHHTCTHHH
T ss_pred CCcccccCCcc-c-hhhHHHhcCCcH--HH---HHhcChhhHhhcC--------CCCCcEEEEecCCCcccccchhHHHH
Confidence 99888643211 0 001112233221 11 1344555444443 235799999999999998532 7899
Q ss_pred HHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 729 LATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 729 ~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
.++|++. |.+++++++++++|.+.. ..+...+++.|+.++|+
T Consensus 237 ~~~l~~~----------g~~~~~~~~~g~~H~~~~----~~~~~~~~l~~~~~~l~ 278 (278)
T 3e4d_A 237 EEAIKGT----------DIGLTLRMHDRYDHSYYF----ISTFMDDHLKWHAERLG 278 (278)
T ss_dssp HHHHTTS----------SCEEEEEEETTCCSSHHH----HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHc----------CCCceEEEeCCCCcCHHH----HHHHHHHHHHHHHHhcC
Confidence 9999887 899999999999998632 23567788999998875
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-19 Score=191.62 Aligned_cols=238 Identities=15% Similarity=0.099 Sum_probs=168.6
Q ss_pred CCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCcc-CCCCCCHHHHHHHHcCCeEEEEEeecCCCCC
Q 003878 504 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNIS-VTPSFSVSRTILMRHLGAVFCIANIRGGGEY 582 (789)
Q Consensus 504 ~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~-~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~ 582 (789)
..+.++.+.+++.+| +|++.++.|++ .++.|+||++|||.... ....|......+..+.||.|+.+|+||.++.
T Consensus 61 ~~~~~~~~~i~~~~~--~i~~~iy~P~~---~~~~p~vv~~HGGg~~~g~~~~~~~~~~~La~~~g~~Vv~~Dyrg~~~~ 135 (323)
T 3ain_A 61 EVGKIEDITIPGSET--NIKARVYYPKT---QGPYGVLVYYHGGGFVLGDIESYDPLCRAITNSCQCVTISVDYRLAPEN 135 (323)
T ss_dssp CCSEEEEEEEECSSS--EEEEEEEECSS---CSCCCEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTS
T ss_pred CccEEEEEEecCCCC--eEEEEEEecCC---CCCCcEEEEECCCccccCChHHHHHHHHHHHHhcCCEEEEecCCCCCCC
Confidence 456788899988777 79999999986 35789999999975332 2334444333443334999999999998864
Q ss_pred ChhHHhcccccCCcchHHHHHHHHHHHHHcCCC--CCCcEEEEeeChHHHHHHHHHHhCCCce---eEEEecCCcccccc
Q 003878 583 GEEWHKGGALAKKQNCFDDFISASEYLISAGYT--QSRKLCIEGGSNGGLLVGACINQRPDLF---GCALAHVGVMDMLR 657 (789)
Q Consensus 583 g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~--d~~~i~i~G~S~GG~l~~~~~~~~pd~f---~a~v~~~p~~d~~~ 657 (789)
. ....++|+.++++|+.+.... |++||+|+|+|+||.+++.++.++|++. +++|+.+|+++...
T Consensus 136 ~-----------~p~~~~d~~~~~~~l~~~~~~lgd~~~i~l~G~S~GG~lA~~~a~~~~~~~~~~~~~vl~~p~~~~~~ 204 (323)
T 3ain_A 136 K-----------FPAAVVDSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQVLIYPAVSFDL 204 (323)
T ss_dssp C-----------TTHHHHHHHHHHHHHHHTGGGGTCTTCEEEEEETHHHHHHHHHHHHHHHTTCCCSEEEEESCCCSCCS
T ss_pred C-----------CcchHHHHHHHHHHHHHhHHHhCCCceEEEEecCchHHHHHHHHHHhhhcCCCceeEEEEeccccCCC
Confidence 2 234578999999999876311 7899999999999999999999888776 89999999887543
Q ss_pred cccccCCccchhhcCC-C-CcHHHHHH-H------------HhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCc
Q 003878 658 YHKFTIGHAWVSDFGC-S-EEEEEFYW-L------------IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVP 722 (789)
Q Consensus 658 ~~~~~~~~~~~~e~g~-p-~~~~~~~~-l------------~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~ 722 (789)
... .+ .++.. + ...+...+ . ...+|+.. .. ...||+||++|++|..+
T Consensus 205 ~~~-----~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~sp~~~--~l--------~~l~P~lii~G~~D~l~-- 266 (323)
T 3ain_A 205 ITK-----SL-YDNGEGFFLTREHIDWFGQQYLRSFADLLDFRFSPILA--DL--------NDLPPALIITAEHDPLR-- 266 (323)
T ss_dssp CCH-----HH-HHHSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGS--CC--------TTCCCEEEEEETTCTTH--
T ss_pred CCc-----cH-HHhccCCCCCHHHHHHHHHHhCCCCcccCCcccCcccC--cc--------cCCCHHHEEECCCCccH--
Confidence 211 00 00000 0 01111100 1 12345443 11 13579999999999987
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCc---hhhHHHHHHHHHHHHHHHhCC
Q 003878 723 LHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP---TQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 723 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~~ 785 (789)
.++.+++++|+.. |.++++.+++++||++... .....+..+.+.+||.++++.
T Consensus 267 ~~~~~~a~~l~~a----------g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 322 (323)
T 3ain_A 267 DQGEAYANKLLQS----------GVQVTSVGFNNVIHGFVSFFPFIEQGRDAIGLIGYVLRKVFYG 322 (323)
T ss_dssp HHHHHHHHHHHHT----------TCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHc----------CCCEEEEEECCCccccccccCcCHHHHHHHHHHHHHHHHHhcC
Confidence 5788999999988 8899999999999997542 123356778899999988753
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=193.78 Aligned_cols=241 Identities=12% Similarity=0.061 Sum_probs=168.0
Q ss_pred CCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCCHHHHHHHHcCCeEEEEEeecCCCCC
Q 003878 504 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGGEY 582 (789)
Q Consensus 504 ~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~RG~g~~ 582 (789)
.....+.+.+++.+| +|++.++.|++. .++.|+||++|||...... ..|......+..+.||.|+.+|+||.++.
T Consensus 44 ~~~~~~~~~i~~~~g--~l~~~~~~P~~~--~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~~~~ 119 (310)
T 2hm7_A 44 PVAEVREFDMDLPGR--TLKVRMYRPEGV--EPPYPALVYYHGGSWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEH 119 (310)
T ss_dssp CCSEEEEEEEEETTE--EEEEEEEECTTC--CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTS
T ss_pred CcceEEEEEeccCCC--eEEEEEEecCCC--CCCCCEEEEECCCccccCChhHhHHHHHHHHHhcCCEEEEeCCCCCCCC
Confidence 345678888988776 899999999863 3678999999997533333 34444333344424999999999998864
Q ss_pred ChhHHhcccccCCcchHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhCCC----ceeEEEecCCcccc
Q 003878 583 GEEWHKGGALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQRPD----LFGCALAHVGVMDM 655 (789)
Q Consensus 583 g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~pd----~f~a~v~~~p~~d~ 655 (789)
. .....+|+.++++||.+.. .+|+++|+++|+|+||.+++.++.++|+ .++++|+.+|++++
T Consensus 120 ~-----------~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~v~~~vl~~p~~~~ 188 (310)
T 2hm7_A 120 K-----------FPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGY 188 (310)
T ss_dssp C-----------TTHHHHHHHHHHHHHHHTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCCCEEEESCCCCC
T ss_pred C-----------CCccHHHHHHHHHHHHhhHHHhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcCC
Confidence 3 2345789999999999874 3588999999999999999999988776 69999999999886
Q ss_pred cccccccCCccchhhcC-CC-CcHHHHHH-HH------------hcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCC
Q 003878 656 LRYHKFTIGHAWVSDFG-CS-EEEEEFYW-LI------------KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRV 720 (789)
Q Consensus 656 ~~~~~~~~~~~~~~e~g-~p-~~~~~~~~-l~------------~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V 720 (789)
..... ...+ .++. .+ .......+ .. ..+|.....- ...||+||++|++|..+
T Consensus 189 ~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l---------~~~~P~lii~G~~D~~~ 255 (310)
T 2hm7_A 189 DPAHP---PASI-EENAEGYLLTGGMMLWFRDQYLNSLEELTHPWFSPVLYPDL---------SGLPPAYIATAQYDPLR 255 (310)
T ss_dssp CTTSC---CHHH-HHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCC---------TTCCCEEEEEEEECTTH
T ss_pred CcccC---Ccch-hhcCCCCCCCHHHHHHHHHHhCCCCCccCCccCCCCcCccc---------cCCCCEEEEEecCCCch
Confidence 51110 0000 0110 00 01111111 11 1234332111 12479999999999987
Q ss_pred CcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCc---hhhHHHHHHHHHHHHHHHhC
Q 003878 721 VPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP---TQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 721 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~ 784 (789)
.++.+++++|++. |.++++++++++||++... ..+..+....+.+||.++|+
T Consensus 256 --~~~~~~~~~l~~~----------g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~ 310 (310)
T 2hm7_A 256 --DVGKLYAEALNKA----------GVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDALA 310 (310)
T ss_dssp --HHHHHHHHHHHHT----------TCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHC----------CCCEEEEEeCCCccchhhhcccChHHHHHHHHHHHHHHHHhC
Confidence 6789999999987 8899999999999986531 12235677889999998874
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-19 Score=193.85 Aligned_cols=242 Identities=17% Similarity=0.137 Sum_probs=170.0
Q ss_pred CCCcEEEEEEecCCCce-EEEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCCHHHHHHHHcCCeEEEEEeecCCCC
Q 003878 504 SEFHVHQVFVPSKDGST-KIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGGE 581 (789)
Q Consensus 504 ~~~~~~~~~~~s~dg~~-~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~RG~g~ 581 (789)
..+..+.+.+++.|| . +|++.++.|++. .++.|+||++|||...... ..+......+..+.||.|+.+|+||.|+
T Consensus 47 ~~~~~~~~~i~~~~g-~~~l~~~~~~P~~~--~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~G~~Vv~~d~rg~~~ 123 (323)
T 1lzl_A 47 DGVSLRELSAPGLDG-DPEVKIRFVTPDNT--AGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAPE 123 (323)
T ss_dssp TTEEEEEEEECCSTT-CCCEEEEEEEESSC--CSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTTT
T ss_pred CCceEEEEEecCCCC-CceeEEEEEecCCC--CCCCcEEEEECCCccccCChhhhHHHHHHHHHhcCcEEEEecCCCCCC
Confidence 356788899999999 8 899999999852 4678999999998633222 2344434444443599999999999886
Q ss_pred CChhHHhcccccCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhCCC----ceeEEEecCCccc
Q 003878 582 YGEEWHKGGALAKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQRPD----LFGCALAHVGVMD 654 (789)
Q Consensus 582 ~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~pd----~f~a~v~~~p~~d 654 (789)
.. .....+|+.++++||.+. -.+|+++|+++|+|+||.+++.++.++|+ .++++|+.+|+++
T Consensus 124 ~~-----------~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~ 192 (323)
T 1lzl_A 124 TT-----------FPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPELD 192 (323)
T ss_dssp SC-----------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCCC
T ss_pred CC-----------CCchHHHHHHHHHHHHhhHHHcCCChhheEEEecCchHHHHHHHHHHHhhcCCCCeeEEEEECCccC
Confidence 42 234578999999999874 23688999999999999999999988776 4999999999988
Q ss_pred ccccccccCCccchhhcCC-C-CcHHH----HHHHH--------------hcCcccCCCCCCCCCCCCCCCCCeEEEEec
Q 003878 655 MLRYHKFTIGHAWVSDFGC-S-EEEEE----FYWLI--------------KYSPLHNVRRPWEQNPDKPFQYPSTLLLTA 714 (789)
Q Consensus 655 ~~~~~~~~~~~~~~~e~g~-p-~~~~~----~~~l~--------------~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g 714 (789)
...... . ..++.. + ..... ++.+. ..+|.....- ...||+||+||
T Consensus 193 ~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~---------~~~~P~li~~G 257 (323)
T 1lzl_A 193 DRLETV-----S-MTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVSIYAAPSRATDL---------TGLPPTYLSTM 257 (323)
T ss_dssp TTCCSH-----H-HHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCCTTTCGGGCSCC---------TTCCCEEEEEE
T ss_pred CCcCch-----h-HHHhccCCCCCHHHHHHHHHHhCCCCcccccccCCCcccCcccCccc---------CCCChhheEEC
Confidence 643211 0 001100 0 00000 00011 1233322111 12489999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCc--hhhHHHHHHHHHHHHHHHhCCC
Q 003878 715 DHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP--TQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 715 ~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~--~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
++|..+ .++.+++++|++. |.++++++++++||++... ..+..+....+.+||.++++..
T Consensus 258 ~~D~~~--~~~~~~~~~l~~~----------g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~i~~fl~~~l~~~ 319 (323)
T 1lzl_A 258 ELDPLR--DEGIEYALRLLQA----------GVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLRSL 319 (323)
T ss_dssp TTCTTH--HHHHHHHHHHHHT----------TCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTCC-
T ss_pred CcCCch--HHHHHHHHHHHHc----------CCCEEEEEeCcCccCcccCccCHHHHHHHHHHHHHHHHHhccC
Confidence 999987 5889999999988 8899999999999986421 1223567788999999998643
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.7e-21 Score=199.88 Aligned_cols=246 Identities=14% Similarity=0.111 Sum_probs=158.9
Q ss_pred EEEEEe-cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEee--cCCCCCChh
Q 003878 509 HQVFVP-SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANI--RGGGEYGEE 585 (789)
Q Consensus 509 ~~~~~~-s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~--RG~g~~g~~ 585 (789)
+.+.+. ..+| .++++.++.|++.. .++.|+||++||+.+.............+++++||+|+++|+ ||.+..|..
T Consensus 17 ~~~~~~s~~~~-~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~rG~~~~~~~ 94 (282)
T 3fcx_A 17 KVFEHDSVELN-CKMKFAVYLPPKAE-TGKCPALYWLSGLTCTEQNFISKSGYHQSASEHGLVVIAPDTSPRGCNIKGED 94 (282)
T ss_dssp EEEEEEETTTT-EEEEEEEEECGGGG-TSCEEEEEEECCTTCCSHHHHHHSCCHHHHHHHTCEEEEECSCSSCCCC----
T ss_pred EEEEEEchhcC-CeeEEEEEcCCCCC-CCCCCEEEEEcCCCCCccchhhcchHHHHhhcCCeEEEEeccccCcccccccc
Confidence 444444 4578 99999999998753 368999999999876543211100113556669999999999 887765533
Q ss_pred --H--------HhcccccC---CcchHHHHH-HHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 586 --W--------HKGGALAK---KQNCFDDFI-SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 586 --~--------~~~~~~~~---~~~~~~D~~-~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
| +....... ......++. +.++++.+.--+|++||+|+|+|+||++++.++.++|++|+++|+.+|
T Consensus 95 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~ 174 (282)
T 3fcx_A 95 ESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICALKNPGKYKSVSAFAP 174 (282)
T ss_dssp ----CCCCCCTTCBCCSTTHHHHCBHHHHHHTHHHHHHHHHSSEEEEEEEEEEETHHHHHHHHHHHTSTTTSSCEEEESC
T ss_pred ccccccCCcccccccCcccccchhhHHHHHHHHHHHHHHHHcCCCccceEEEEECchHHHHHHHHHhCcccceEEEEeCC
Confidence 1 11111000 001223334 334444434337899999999999999999999999999999999999
Q ss_pred cccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHH--HHHHH
Q 003878 652 VMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH--SLKLL 729 (789)
Q Consensus 652 ~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~--~~~~~ 729 (789)
++++....... ..+...+|.... .+..++|...+...- ...+|+|++||++|..||+.+ +.+++
T Consensus 175 ~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-------~~~~p~li~~G~~D~~v~~~~~~~~~~~ 240 (282)
T 3fcx_A 175 ICNPVLCPWGK--KAFSGYLGTDQS-----KWKAYDATHLVKSYP-------GSQLDILIDQGKDDQFLLDGQLLPDNFI 240 (282)
T ss_dssp CCCGGGSHHHH--HHHHHHHC---C-----CGGGGCHHHHHTTCC----------CCEEEEEETTCHHHHTTSSCHHHHH
T ss_pred ccCcccCchhH--HHHHHhcCCchh-----hhhhcCHHHHHHhcc-------cCCCcEEEEcCCCCcccccchhhHHHHH
Confidence 98754321000 001112232200 012344444333320 126899999999999997665 66999
Q ss_pred HHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 730 ATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 730 ~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
++|++. |.++++++++++||.+.. ......+.+.|+.++|+
T Consensus 241 ~~l~~~----------g~~~~~~~~~g~~H~~~~----~~~~~~~~~~~~~~~l~ 281 (282)
T 3fcx_A 241 AACTEK----------KIPVVFRLQEDYDHSYYF----IATFITDHIRHHAKYLN 281 (282)
T ss_dssp HHHHHT----------TCCEEEEEETTCCSSHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHc----------CCceEEEECCCCCcCHHH----HHhhhHHHHHHHHHhhc
Confidence 999988 899999999999998732 23566778899988875
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-19 Score=191.51 Aligned_cols=240 Identities=17% Similarity=0.137 Sum_probs=164.6
Q ss_pred CCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCCHHHHHHHHcC-CeEEEEEeecCCCCC
Q 003878 505 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHL-GAVFCIANIRGGGEY 582 (789)
Q Consensus 505 ~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~~~~~~~l~~~-G~~v~~~~~RG~g~~ 582 (789)
....+.+.+++.+| +|++.++.|++ .++.|+||++||+...... ..|.. +...+.++ |+.|+++|+||.|+.
T Consensus 45 ~~~~~~~~i~~~~g--~i~~~~~~p~~---~~~~p~vv~~HGgg~~~g~~~~~~~-~~~~la~~~g~~v~~~d~rg~g~~ 118 (311)
T 2c7b_A 45 IAETRDVHIPVSGG--SIRARVYFPKK---AAGLPAVLYYHGGGFVFGSIETHDH-ICRRLSRLSDSVVVSVDYRLAPEY 118 (311)
T ss_dssp CSEEEEEEEEETTE--EEEEEEEESSS---CSSEEEEEEECCSTTTSCCTGGGHH-HHHHHHHHHTCEEEEECCCCTTTS
T ss_pred cceEEEEEecCCCC--cEEEEEEecCC---CCCCcEEEEECCCcccCCChhhhHH-HHHHHHHhcCCEEEEecCCCCCCC
Confidence 44678888988776 79999999986 2457999999998632222 23333 33444434 999999999998864
Q ss_pred ChhHHhcccccCCcchHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhCCC----ceeEEEecCCcccc
Q 003878 583 GEEWHKGGALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQRPD----LFGCALAHVGVMDM 655 (789)
Q Consensus 583 g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~pd----~f~a~v~~~p~~d~ 655 (789)
. .....+|+.+++++|.+.. .+|+++|+++|+|+||.+++.++.++|+ +++++|+.+|++++
T Consensus 119 ~-----------~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~ 187 (311)
T 2c7b_A 119 K-----------FPTAVEDAYAALKWVADRADELGVDPDRIAVAGDSAGGNLAAVVSILDRNSGEKLVKKQVLIYPVVNM 187 (311)
T ss_dssp C-----------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCC
T ss_pred C-----------CCccHHHHHHHHHHHHhhHHHhCCCchhEEEEecCccHHHHHHHHHHHHhcCCCCceeEEEECCccCC
Confidence 2 2335689999999998762 3588999999999999999999988776 59999999999884
Q ss_pred cccccccCCccchhhcCCC-CcHHHHHHH-------------HhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCC
Q 003878 656 LRYHKFTIGHAWVSDFGCS-EEEEEFYWL-------------IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVV 721 (789)
Q Consensus 656 ~~~~~~~~~~~~~~e~g~p-~~~~~~~~l-------------~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~ 721 (789)
........ ..+ ..+... .......++ ...+|+...-. ..||+|+++|++|..++
T Consensus 188 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~----------~~~P~lii~G~~D~~~~ 255 (311)
T 2c7b_A 188 TGVPTASL-VEF-GVAETTSLPIELMVWFGRQYLKRPEEAYDFKASPLLADLG----------GLPPALVVTAEYDPLRD 255 (311)
T ss_dssp SSCCCHHH-HHH-HHCTTCSSCHHHHHHHHHHHCSSTTGGGSTTTCGGGSCCT----------TCCCEEEEEETTCTTHH
T ss_pred ccccccCC-ccH-HHhccCCCCHHHHHHHHHHhCCCCccccCcccCccccccc----------CCCcceEEEcCCCCchH
Confidence 21110000 000 000000 000100000 12244433111 25799999999999885
Q ss_pred cHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCc---hhhHHHHHHHHHHHHHHHhCC
Q 003878 722 PLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP---TQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 722 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~~ 785 (789)
++..++++|+.. +.++++++++++||++... ..+..+..+.+.+||.++++.
T Consensus 256 --~~~~~~~~l~~~----------g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~ 310 (311)
T 2c7b_A 256 --EGELYAYKMKAS----------GSRAVAVRFAGMVHGFVSFYPFVDAGREALDLAAASIRSGLQP 310 (311)
T ss_dssp --HHHHHHHHHHHT----------TCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHHHTCC
T ss_pred --HHHHHHHHHHHC----------CCCEEEEEeCCCccccccccccCHHHHHHHHHHHHHHHHHhcC
Confidence 667888889887 8899999999999987521 223356778899999998864
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-19 Score=193.71 Aligned_cols=235 Identities=14% Similarity=0.061 Sum_probs=160.2
Q ss_pred CCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCCHHHHHHHHcCCeEEEEEeecCCCC
Q 003878 503 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGGE 581 (789)
Q Consensus 503 ~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~RG~g~ 581 (789)
+.....+.+.+ +| .++ ++|++. ....|+||++|||...... ..+......++.+.||+|+++|||++++
T Consensus 55 ~~~~~~~~~~~---~g-~~~----~~p~~~--~~~~~~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~dyr~~~~ 124 (322)
T 3k6k_A 55 AEGVELTLTDL---GG-VPC----IRQATD--GAGAAHILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYRLAPE 124 (322)
T ss_dssp CTTCEEEEEEE---TT-EEE----EEEECT--TCCSCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTCEEEEECCCCTTT
T ss_pred CCCceEEEEEE---CC-EeE----EecCCC--CCCCeEEEEEcCCcccCCChHHHHHHHHHHHHhcCCEEEEeeCCCCCC
Confidence 33455555555 67 655 466652 2334559999998533222 2233333444443599999999999775
Q ss_pred CChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc----eeEEEecCCcccccc
Q 003878 582 YGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDL----FGCALAHVGVMDMLR 657 (789)
Q Consensus 582 ~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~----f~a~v~~~p~~d~~~ 657 (789)
.. ....++|+.++++||.++ .+|+++|+|+|+|+||.+++.++.+.|+. ++++|+.+|++|+..
T Consensus 125 ~~-----------~~~~~~d~~~a~~~l~~~-~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~ 192 (322)
T 3k6k_A 125 NP-----------FPAAVDDCVAAYRALLKT-AGSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLSPFVDLTL 192 (322)
T ss_dssp SC-----------TTHHHHHHHHHHHHHHHH-HSSGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTC
T ss_pred CC-----------CchHHHHHHHHHHHHHHc-CCCCccEEEEecCccHHHHHHHHHHHHhcCCCCceEEEEecCCcCccc
Confidence 32 235679999999999998 46899999999999999999999887765 999999999998753
Q ss_pred cccccCCccchhhc-CCC-CcHHHHHHH------------HhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcH
Q 003878 658 YHKFTIGHAWVSDF-GCS-EEEEEFYWL------------IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPL 723 (789)
Q Consensus 658 ~~~~~~~~~~~~e~-g~p-~~~~~~~~l------------~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~ 723 (789)
.... ..... ..+ ...+....+ ...+|+..... ..||+||+||++|.. ..
T Consensus 193 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~----------~~pP~li~~G~~D~~--~~ 255 (322)
T 3k6k_A 193 SRWS-----NSNLADRDFLAEPDTLGEMSELYVGGEDRKNPLISPVYADLS----------GLPEMLIHVGSEEAL--LS 255 (322)
T ss_dssp CSHH-----HHHTGGGCSSSCHHHHHHHHHHHHTTSCTTCTTTCGGGSCCT----------TCCCEEEEEESSCTT--HH
T ss_pred Cccc-----hhhccCCCCcCCHHHHHHHHHHhcCCCCCCCCcCCccccccc----------CCCcEEEEECCcCcc--HH
Confidence 3210 00000 000 111111111 12355544333 368999999999987 46
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCc---hhhHHHHHHHHHHHHHHHhCCC
Q 003878 724 HSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP---TQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 724 ~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
++.+++++|+.. |.++++++++++||++... ..+..+..+.+.+||.++|+..
T Consensus 256 ~~~~~~~~l~~~----------g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~~l~~~ 311 (322)
T 3k6k_A 256 DSTTLAERAGAA----------GVSVELKIWPDMPHVFQMYGKFVNAADISIKEICHWISARISKL 311 (322)
T ss_dssp HHHHHHHHHHHT----------TCCEEEEEETTCCTTGGGGTTTCHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHC----------CCCEEEEEECCCccccccccccChHHHHHHHHHHHHHHHHHhcc
Confidence 889999999998 8999999999999987532 2234577889999999998754
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-19 Score=197.89 Aligned_cols=223 Identities=13% Similarity=0.064 Sum_probs=158.0
Q ss_pred EEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHH
Q 003878 521 KIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFD 600 (789)
Q Consensus 521 ~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~ 600 (789)
.+.+.++.|++ .++.|+||++||+.+. .+.. ...+|+++||+|+++|+||.++.... ......+
T Consensus 144 ~l~~~l~~P~~---~~~~P~Vv~~hG~~~~----~~~~-~a~~La~~Gy~V~a~D~rG~g~~~~~--------~~~~~~~ 207 (422)
T 3k2i_A 144 RVRATLFLPPG---PGPFPGIIDIFGIGGG----LLEY-RASLLAGHGFATLALAYYNFEDLPNN--------MDNISLE 207 (422)
T ss_dssp TEEEEEEECSS---SCCBCEEEEECCTTCS----CCCH-HHHHHHTTTCEEEEEECSSSTTSCSS--------CSCEETH
T ss_pred cEEEEEEcCCC---CCCcCEEEEEcCCCcc----hhHH-HHHHHHhCCCEEEEEccCCCCCCCCC--------cccCCHH
Confidence 68999999986 3678999999998654 2222 35667779999999999997764332 2224578
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc----c-------cc-------
Q 003878 601 DFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH----K-------FT------- 662 (789)
Q Consensus 601 D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~----~-------~~------- 662 (789)
|+.+++++|.++..+++++|+++|+|+||.+++.++.++|+ ++++|+.+|........ . ..
T Consensus 208 d~~~~~~~l~~~~~v~~~~i~l~G~S~GG~lAl~~a~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (422)
T 3k2i_A 208 YFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKN-VSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVA 286 (422)
T ss_dssp HHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSS-EEEEEEESCCSBCCSSCEEETTEEECCCCBCGGGCEEC
T ss_pred HHHHHHHHHHhCcCcCCCCEEEEEECHHHHHHHHHHhhCcC-ccEEEEEcCcccccCCchhhcCCcCCCcccchhhcccC
Confidence 99999999999988899999999999999999999999998 89999888776432110 0 00
Q ss_pred -CC-ccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHH-HHHHHHHHHhhccC
Q 003878 663 -IG-HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHS-LKLLATMQYVLCTS 739 (789)
Q Consensus 663 -~~-~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~-~~~~~~L~~~~~~~ 739 (789)
.+ ..+...+..+... ...++...+.++ .+|+|+++|++|..+|+.+. ..+.++|++.
T Consensus 287 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i----------~~P~Lii~G~~D~~vp~~~~~~~~~~~l~~~---- 346 (422)
T 3k2i_A 287 FSGLVDIVDIRNALVGG------YKNPSMIPIEKA----------QGPILLIVGQDDHNWRSELYAQTVSERLQAH---- 346 (422)
T ss_dssp TTSCEECTTCBCCCTTG------GGSTTBCCGGGC----------CSCEEEEEETTCSSSCHHHHHHHHHHHHHHT----
T ss_pred cchhHHHHHHHhhhhhc------ccccccccHHHC----------CCCEEEEEeCCCCCCCHHHHHHHHHHHHHhc----
Confidence 00 0001111122110 011122223333 67999999999999999866 5888899987
Q ss_pred CCCCCCCCc-EEEEEeCCCCcCCCCc--------------------------hhhHHHHHHHHHHHHHHHhCCC
Q 003878 740 LENSPQTNP-IIGRIERKAGHGVGLP--------------------------TQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 740 ~~~~~~~~~-~~l~~~~~~gH~~~~~--------------------------~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
+.+ +++.+++++||.+..+ .....+....+.+||.++|+..
T Consensus 347 ------g~~~~~l~~~~gagH~~~~p~~p~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~i~~Fl~~~L~~~ 414 (422)
T 3k2i_A 347 ------GKEKPQIICYPGTGHYIEPPYFPLCPASLHRLLNKHVIWGGEPRAHSKAQEDAWKQILAFFCKHLGGT 414 (422)
T ss_dssp ------TCCCCEEEEETTCCSCCCSTTCCCCCEEEETTTTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ------CCCCCEEEEECCCCCEECCCCCCcchhhhccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 777 8999999999997321 1223567788999999999753
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6e-20 Score=186.90 Aligned_cols=214 Identities=14% Similarity=0.109 Sum_probs=156.0
Q ss_pred EEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhc
Q 003878 510 QVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKG 589 (789)
Q Consensus 510 ~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~ 589 (789)
.+.+++.|| .++.++++.|++ ++.|+||++||..+... .+. .....|+++||.|+++|+||.|..+..+...
T Consensus 5 ~~~~~~~~g-~~l~~~~~~p~~----~~~p~vv~~hG~~~~~~--~~~-~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~ 76 (236)
T 1zi8_A 5 GISIQSYDG-HTFGALVGSPAK----APAPVIVIAQDIFGVNA--FMR-ETVSWLVDQGYAAVCPDLYARQAPGTALDPQ 76 (236)
T ss_dssp TCCEECTTS-CEECEEEECCSS----CSEEEEEEECCTTBSCH--HHH-HHHHHHHHTTCEEEEECGGGGTSTTCBCCTT
T ss_pred eEEEecCCC-CeEEEEEECCCC----CCCCEEEEEcCCCCCCH--HHH-HHHHHHHhCCcEEEeccccccCCCccccccc
Confidence 345778899 999999998874 67899999999766532 233 3445566589999999999987654321100
Q ss_pred -----------ccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc
Q 003878 590 -----------GALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY 658 (789)
Q Consensus 590 -----------~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~ 658 (789)
..........+|+.+++++|.++...+ ++|+++|+|+||.+++.++.++| ++++++..|....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~~i~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~--- 150 (236)
T 1zi8_A 77 DERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLVASKGY--VDRAVGYYGVGLE--- 150 (236)
T ss_dssp CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTSSTTEE-EEEEEEEETHHHHHHHHHHHHTC--SSEEEEESCSSGG---
T ss_pred chhhhhhhhhhhhccCcchhhHHHHHHHHHHHhccCCC-CCEEEEEECcCHHHHHHHhccCC--ccEEEEecCcccc---
Confidence 001111234689999999998876544 69999999999999999999988 8888877763211
Q ss_pred ccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhcc
Q 003878 659 HKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCT 738 (789)
Q Consensus 659 ~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~ 738 (789)
++...+.+. .+|+|+++|.+|..|++.++.++++.++..
T Consensus 151 ----------------------------~~~~~~~~~----------~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~--- 189 (236)
T 1zi8_A 151 ----------------------------KQLNKVPEV----------KHPALFHMGGQDHFVPAPSRQLITEGFGAN--- 189 (236)
T ss_dssp ----------------------------GCGGGGGGC----------CSCEEEEEETTCTTSCHHHHHHHHHHHTTC---
T ss_pred ----------------------------cchhhhhhc----------CCCEEEEecCCCCCCCHHHHHHHHHHHHhC---
Confidence 011223333 579999999999999999999999998764
Q ss_pred CCCCCCCCCcEEEEEeCCCCcCCCCchh------hHHHHHHHHHHHHHHHhCCC
Q 003878 739 SLENSPQTNPIIGRIERKAGHGVGLPTQ------KMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 739 ~~~~~~~~~~~~l~~~~~~gH~~~~~~~------~~~~~~~~~~~fl~~~l~~~ 786 (789)
+ ++++++++++||++..... ...+....+.+||.++++.+
T Consensus 190 -------~-~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~i~~fl~~~l~~~ 235 (236)
T 1zi8_A 190 -------P-LLQVHWYEEAGHSFARTGSSGYVASAAALANERTLDFLVPLQSRK 235 (236)
T ss_dssp -------T-TEEEEEETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGGGCC--
T ss_pred -------C-CceEEEECCCCcccccCCCCccCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4 7899999999998764321 12356678999999988753
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=197.69 Aligned_cols=244 Identities=14% Similarity=0.038 Sum_probs=165.9
Q ss_pred CCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCCh
Q 003878 505 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE 584 (789)
Q Consensus 505 ~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~ 584 (789)
.+..+.+.+++.|| .+++++++.|++ .+.++.|+||++||+.+.. ..+.......+.++||.|+++|+||.|....
T Consensus 65 ~~~~~~~~~~~~~g-~~~~~~~~~p~~-~~~~~~p~vv~~hG~~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~ 140 (367)
T 2hdw_A 65 KVEHRKVTFANRYG-ITLAADLYLPKN-RGGDRLPAIVIGGPFGAVK--EQSSGLYAQTMAERGFVTLAFDPSYTGESGG 140 (367)
T ss_dssp TEEEEEEEEECTTS-CEEEEEEEEESS-CCSSCEEEEEEECCTTCCT--TSHHHHHHHHHHHTTCEEEEECCTTSTTSCC
T ss_pred CceeEEEEEecCCC-CEEEEEEEeCCC-CCCCCCCEEEEECCCCCcc--hhhHHHHHHHHHHCCCEEEEECCCCcCCCCC
Confidence 45678899999999 999999999987 3356789999999986543 2233224455556999999999999875432
Q ss_pred hHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccccc--
Q 003878 585 EWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT-- 662 (789)
Q Consensus 585 ~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~-- 662 (789)
.... ........+|+.+++++|.++..+|+++++++|+|+||.+++.++.++| .++++|+.+|+. +.......
T Consensus 141 ~~~~---~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-~~~~~v~~~p~~-~~~~~~~~~~ 215 (367)
T 2hdw_A 141 QPRN---VASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDK-RVKAVVTSTMYD-MTRVMSKGYN 215 (367)
T ss_dssp SSSS---CCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCCC-HHHHHHHTTT
T ss_pred cCcc---ccchhhHHHHHHHHHHHHHhCcCCCcCcEEEEEECHHHHHHHHHHhcCC-CccEEEEecccc-ccHHHhhhhc
Confidence 1110 0112345789999999999998888999999999999999999999998 588999888763 21100000
Q ss_pred --------------------------------------C-Ccc----chhhcC-----CC--------CcHHHHHHHHhc
Q 003878 663 --------------------------------------I-GHA----WVSDFG-----CS--------EEEEEFYWLIKY 686 (789)
Q Consensus 663 --------------------------------------~-~~~----~~~e~g-----~p--------~~~~~~~~l~~~ 686 (789)
. ... ....+. .| ........+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (367)
T 2hdw_A 216 DSVTLEQRTRTLEQLGQQRWKDAESGTPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRAVNSGNAWTMTTPLSFMNM 295 (367)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHTSCCBCSCTTCCCSCCCHHHHHHHHHHTSTTTCCTTCSTTTCCCBTTTHHHHTTS
T ss_pred cccchHHHHHHHHHHHHHHHHHhccCCceeecCCCccccccccccCCccceeecccccCcccccccchhhhhhHHHhcCC
Confidence 0 000 000000 00 000112334455
Q ss_pred CcccCCCCCCCCCCCCCCCC-CeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCch
Q 003878 687 SPLHNVRRPWEQNPDKPFQY-PSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT 765 (789)
Q Consensus 687 sP~~~v~~~~~~~~~~~~~~-pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~ 765 (789)
+|...+.++ . +|+|+++|++|. ++.++.+++++ . +.++++++++++||......
T Consensus 296 ~~~~~~~~i----------~~~PvLii~G~~D~--~~~~~~~~~~~---~----------~~~~~~~~~~g~gH~~~~~~ 350 (367)
T 2hdw_A 296 PILTYIKEI----------SPRPILLIHGERAH--SRYFSETAYAA---A----------AEPKELLIVPGASHVDLYDR 350 (367)
T ss_dssp CSCTTGGGG----------TTSCEEEEEETTCT--THHHHHHHHHH---S----------CSSEEEEEETTCCTTHHHHC
T ss_pred ChhHhHHhh----------cCCceEEEecCCCC--CHHHHHHHHHh---C----------CCCeeEEEeCCCCeeeeecC
Confidence 666666654 5 899999999998 77887777665 4 67899999999999843211
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 003878 766 QKMIDEAADRYGFMAKML 783 (789)
Q Consensus 766 ~~~~~~~~~~~~fl~~~l 783 (789)
... .....+.+||.++|
T Consensus 351 ~~~-~~~~~i~~fl~~~l 367 (367)
T 2hdw_A 351 LDR-IPFDRIAGFFDEHL 367 (367)
T ss_dssp TTT-SCHHHHHHHHHHHC
T ss_pred chh-HHHHHHHHHHHhhC
Confidence 111 14667889998875
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-18 Score=178.93 Aligned_cols=209 Identities=15% Similarity=0.090 Sum_probs=159.2
Q ss_pred EEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCC---CCCHHHHHHHHcCCeEEEEEeecCCCCCChhH
Q 003878 510 QVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP---SFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 586 (789)
Q Consensus 510 ~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~---~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~ 586 (789)
++.+++.+| +|.++++.|++ ++.|+||++||..+..... .+. .....|.++||.|+++|+||.|.....+
T Consensus 25 ~~~~~~~~g--~l~~~~~~p~~----~~~p~vv~~HG~~~~~~~~~~~~~~-~~~~~l~~~G~~v~~~d~~g~G~s~~~~ 97 (249)
T 2i3d_A 25 EVIFNGPAG--RLEGRYQPSKE----KSAPIAIILHPHPQFGGTMNNQIVY-QLFYLFQKRGFTTLRFNFRSIGRSQGEF 97 (249)
T ss_dssp EEEEEETTE--EEEEEEECCSS----TTCCEEEEECCCGGGTCCTTSHHHH-HHHHHHHHTTCEEEEECCTTSTTCCSCC
T ss_pred EEEEECCCc--eEEEEEEcCCC----CCCCEEEEECCCcccCCCccchHHH-HHHHHHHHCCCEEEEECCCCCCCCCCCC
Confidence 888998887 79998887764 5679999999964332221 122 3445566699999999999977543221
Q ss_pred HhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCcc
Q 003878 587 HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHA 666 (789)
Q Consensus 587 ~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~ 666 (789)
......++|+.+++++|.+++. ++++++++|+|+||.+++.++.++|+ ++++|+..|..++..
T Consensus 98 ------~~~~~~~~d~~~~i~~l~~~~~-~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~--------- 160 (249)
T 2i3d_A 98 ------DHGAGELSDAASALDWVQSLHP-DSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTYD--------- 160 (249)
T ss_dssp ------CSSHHHHHHHHHHHHHHHHHCT-TCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTSC---------
T ss_pred ------CCccchHHHHHHHHHHHHHhCC-CCCeEEEEEECHHHHHHHHHHhcCCC-ccEEEEEcCchhhhh---------
Confidence 1223446999999999998854 78899999999999999999999998 999999998765311
Q ss_pred chhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCC
Q 003878 667 WVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQT 746 (789)
Q Consensus 667 ~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~ 746 (789)
...+... ..|+|+++|.+|..+++.++.++++++... .+
T Consensus 161 ----------------------~~~~~~~----------~~P~lii~G~~D~~~~~~~~~~~~~~~~~~---------~~ 199 (249)
T 2i3d_A 161 ----------------------FSFLAPC----------PSSGLIINGDADKVAPEKDVNGLVEKLKTQ---------KG 199 (249)
T ss_dssp ----------------------CTTCTTC----------CSCEEEEEETTCSSSCHHHHHHHHHHHTTS---------TT
T ss_pred ----------------------hhhhccc----------CCCEEEEEcCCCCCCCHHHHHHHHHHHhhc---------cC
Confidence 1122233 579999999999999999999999998752 15
Q ss_pred CcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCC
Q 003878 747 NPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 747 ~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
..+++.+++++||.+.. . ..+....+.+||.++++..
T Consensus 200 ~~~~~~~~~g~~H~~~~-~--~~~~~~~i~~fl~~~l~~~ 236 (249)
T 2i3d_A 200 ILITHRTLPGANHFFNG-K--VDELMGECEDYLDRRLNGE 236 (249)
T ss_dssp CCEEEEEETTCCTTCTT-C--HHHHHHHHHHHHHHHHTTC
T ss_pred CceeEEEECCCCccccc-C--HHHHHHHHHHHHHHhcCCC
Confidence 68899999999999863 2 2466778999999988643
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.8e-19 Score=179.83 Aligned_cols=215 Identities=15% Similarity=0.121 Sum_probs=156.5
Q ss_pred CCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCCh
Q 003878 505 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE 584 (789)
Q Consensus 505 ~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~ 584 (789)
.+..+.+.+++ +| .+|.++++.|++ +.|+||++||+.+....+.+. .....|.++||.|+.+|+||.|....
T Consensus 9 ~~~~~~~~~~~-~g-~~l~~~~~~p~~-----~~p~vv~~hG~~~~~~~~~~~-~~~~~l~~~G~~v~~~d~~g~g~s~~ 80 (223)
T 2o2g_A 9 QPQEYAVSVSV-GE-VKLKGNLVIPNG-----ATGIVLFAHGSGSSRYSPRNR-YVAEVLQQAGLATLLIDLLTQEEEEI 80 (223)
T ss_dssp CCCEEEEEEEE-TT-EEEEEEEECCTT-----CCEEEEEECCTTCCTTCHHHH-HHHHHHHHHTCEEEEECSSCHHHHHH
T ss_pred CceeeEEEEec-CC-eEEEEEEecCCC-----CceEEEEecCCCCCCCccchH-HHHHHHHHCCCEEEEEcCCCcCCCCc
Confidence 45678888887 89 999999998874 579999999987654433332 24455655899999999998653221
Q ss_pred hHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCC
Q 003878 585 EWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 664 (789)
Q Consensus 585 ~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~ 664 (789)
..........-....+|+.++++++..++.+|+++++++|+|+||.+++.++.++|++++++|+..|..++..
T Consensus 81 ~~~~~~~~~~~~~~~~d~~~~i~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~~------- 153 (223)
T 2o2g_A 81 DLRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDLAP------- 153 (223)
T ss_dssp HHHHCSSTTCHHHHHHHHHHHHHHHHHCTTTTTSEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCGGGCT-------
T ss_pred cchhhcccCcHHHHHHHHHHHHHHHHhCcCCCCCcEEEEEeCccHHHHHHHHHhCCCceEEEEEeCCCCCcCH-------
Confidence 1111000011122357889999999998888999999999999999999999999999999999988654210
Q ss_pred ccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCC
Q 003878 665 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSP 744 (789)
Q Consensus 665 ~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~ 744 (789)
..+.+. ..|+|+++|.+|..+|.. . .+.+++.
T Consensus 154 -------------------------~~~~~~----------~~P~l~i~g~~D~~~~~~-~---~~~~~~~--------- 185 (223)
T 2o2g_A 154 -------------------------SALPHV----------KAPTLLIVGGYDLPVIAM-N---EDALEQL--------- 185 (223)
T ss_dssp -------------------------TTGGGC----------CSCEEEEEETTCHHHHHH-H---HHHHHHC---------
T ss_pred -------------------------HHHhcC----------CCCEEEEEccccCCCCHH-H---HHHHHhh---------
Confidence 112222 579999999999988633 2 3445554
Q ss_pred CCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 745 QTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 745 ~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
+.++++.+++++||.+..+.. ..+....+.+||.++|+
T Consensus 186 -~~~~~~~~~~~~~H~~~~~~~-~~~~~~~i~~fl~~~l~ 223 (223)
T 2o2g_A 186 -QTSKRLVIIPRASHLFEEPGA-LTAVAQLASEWFMHYLR 223 (223)
T ss_dssp -CSSEEEEEETTCCTTCCSTTH-HHHHHHHHHHHHHHHCC
T ss_pred -CCCeEEEEeCCCCcccCChHH-HHHHHHHHHHHHHHhcC
Confidence 567899999999999765433 24677789999998874
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.1e-19 Score=197.93 Aligned_cols=223 Identities=15% Similarity=0.092 Sum_probs=157.2
Q ss_pred EEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHH
Q 003878 521 KIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFD 600 (789)
Q Consensus 521 ~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~ 600 (789)
.|+++++.|++ .++.|+||++||+.+.. +.. ...+|+++||+|+++|+||.++.+.. ......+
T Consensus 160 ~l~~~l~~P~~---~~~~P~Vv~lhG~~~~~----~~~-~a~~La~~Gy~Vla~D~rG~~~~~~~--------~~~~~~~ 223 (446)
T 3hlk_A 160 RVRGTLFLPPE---PGPFPGIVDMFGTGGGL----LEY-RASLLAGKGFAVMALAYYNYEDLPKT--------METLHLE 223 (446)
T ss_dssp TEEEEEEECSS---SCCBCEEEEECCSSCSC----CCH-HHHHHHTTTCEEEEECCSSSTTSCSC--------CSEEEHH
T ss_pred eEEEEEEeCCC---CCCCCEEEEECCCCcch----hhH-HHHHHHhCCCEEEEeccCCCCCCCcc--------hhhCCHH
Confidence 58999999986 36789999999986542 222 35667779999999999997765422 1224589
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc-----------cc-------
Q 003878 601 DFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK-----------FT------- 662 (789)
Q Consensus 601 D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~-----------~~------- 662 (789)
|+.+++++|.++..+|+++|+++|+|+||.+++.++.++|+ ++++|+.+|......... ..
T Consensus 224 d~~~a~~~l~~~~~vd~~~i~l~G~S~GG~lAl~~A~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (446)
T 3hlk_A 224 YFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKG-ITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVT 302 (446)
T ss_dssp HHHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSC-EEEEEEESCCSBCCSSEEEETTEEECCCCBCGGGCEEC
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHHhCCC-ceEEEEEcCcccccCCCccccCccCCccccchhccccc
Confidence 99999999999988899999999999999999999999998 889888888654321100 00
Q ss_pred -CC-ccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHH-HHHHHHHHHhhccC
Q 003878 663 -IG-HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHS-LKLLATMQYVLCTS 739 (789)
Q Consensus 663 -~~-~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~-~~~~~~L~~~~~~~ 739 (789)
.+ ..+...+..+.... .......+.++ .+|+|+++|++|..+|+.+. ..+.++|++.
T Consensus 303 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i----------~~PvLii~G~~D~~vp~~~~~~~~~~~l~~~---- 362 (446)
T 3hlk_A 303 KDGYADIVDVLNSPLEGP------DQKSFIPVERA----------ESTFLFLVGQDDHNWKSEFYANEACKRLQAH---- 362 (446)
T ss_dssp SSSCEECTTCBCCTTSGG------GGGGBCCGGGC----------CSEEEEEEETTCCSSCHHHHHHHHHHHHHHT----
T ss_pred cchHHHHHHHHhchhhcc------ccccccCHHHC----------CCCEEEEEeCCCCCcChHHHHHHHHHHHHHc----
Confidence 00 00111122221110 00111123333 58999999999999999555 6888899987
Q ss_pred CCCCCCCCc-EEEEEeCCCCcCCCC--------------------------chhhHHHHHHHHHHHHHHHhCCC
Q 003878 740 LENSPQTNP-IIGRIERKAGHGVGL--------------------------PTQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 740 ~~~~~~~~~-~~l~~~~~~gH~~~~--------------------------~~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
+.+ +++.+++++||.+.. ......+....+.+||.++|+..
T Consensus 363 ------g~~~~~l~~~pgagH~~~~p~~P~~~~~~~~~~~~~~~~gG~~~~~~~a~~~~~~~i~~Fl~~~L~~~ 430 (446)
T 3hlk_A 363 ------GRRKPQIICYPETGHYIEPPYFPLCRASLHALVGSPIIWGGEPRAHAMAQVDAWKQLQTFFHKHLGGH 430 (446)
T ss_dssp ------TCCCCEEEEETTBCSCCCSTTCCCCCBC-------CBBCCBCHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ------CCCCcEEEEECCCCCeECCCCCCCChhhcccccCceEeeCCccHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 777 899999999999831 11123567788999999999753
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-20 Score=196.21 Aligned_cols=246 Identities=10% Similarity=0.058 Sum_probs=159.7
Q ss_pred EEEEEEec-CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEee--cCCCCC--
Q 003878 508 VHQVFVPS-KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANI--RGGGEY-- 582 (789)
Q Consensus 508 ~~~~~~~s-~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~--RG~g~~-- 582 (789)
.+.+.+.+ .+| .++++.++.|++.. .++.|+||++||+.+.............+++++|++|+++|. ||.+..
T Consensus 22 ~~~~~~~s~~~~-~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~~~~~~~~~~~~~~~~~g~~vv~~d~~~rg~~~~~~ 99 (283)
T 4b6g_A 22 QQVWAHHAQTLQ-CEMKFAVYLPNNPE-NRPLGVIYWLSGLTCTEQNFITKSGFQRYAAEHQVIVVAPDTSPRGEQVPND 99 (283)
T ss_dssp EEEEEEEETTTT-EEEEEEEEECCCTT-CCCEEEEEEECCTTCCSHHHHHHSCTHHHHHHHTCEEEEECSSCCSTTSCCC
T ss_pred EEEEEEechhhC-CceEEEEEeCCCCC-CCCCCEEEEEcCCCCCccchhhcccHHHHHhhCCeEEEEecccccccccccc
Confidence 34444444 578 99999999999864 578999999999876543211001124566668999999995 454322
Q ss_pred -------ChhHHhcccccC--CcchHHHH-HHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 583 -------GEEWHKGGALAK--KQNCFDDF-ISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 583 -------g~~~~~~~~~~~--~~~~~~D~-~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
|..|+....... ....+.++ ...+..+++..+.+++|++|+|+|+||++++.++.++|++|+++++.+|+
T Consensus 100 ~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~s~~ 179 (283)
T 4b6g_A 100 DAYDLGQSAGFYLNATEQPWAANYQMYDYILNELPRLIEKHFPTNGKRSIMGHSMGGHGALVLALRNQERYQSVSAFSPI 179 (283)
T ss_dssp SSTTSBTTBCTTSBCCSTTGGGTCBHHHHHHTHHHHHHHHHSCEEEEEEEEEETHHHHHHHHHHHHHGGGCSCEEEESCC
T ss_pred ccccccCCCcccccCccCcccchhhHHHHHHHHHHHHHHHhCCCCCCeEEEEEChhHHHHHHHHHhCCccceeEEEECCc
Confidence 222222211110 11122333 32333333333446789999999999999999999999999999999998
Q ss_pred ccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcH-HHHHHHHH
Q 003878 653 MDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPL-HSLKLLAT 731 (789)
Q Consensus 653 ~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~-~~~~~~~~ 731 (789)
+++..... . ...+...+|.. ++. +..++|...+... ...||+|++||+.|..|+.. ++.+++++
T Consensus 180 ~~~~~~~~-~-~~~~~~~~g~~--~~~---~~~~~~~~~~~~~--------~~~~p~li~~G~~D~~~~~~~~~~~~~~~ 244 (283)
T 4b6g_A 180 LSPSLVPW-G-EKAFTAYLGKD--REK---WQQYDANSLIQQG--------YKVQGMRIDQGLEDEFLPTQLRTEDFIET 244 (283)
T ss_dssp CCGGGSHH-H-HHHHHHHHCSC--GGG---GGGGCHHHHHHHT--------CCCSCCEEEEETTCTTHHHHTCHHHHHHH
T ss_pred cccccCcc-h-hhhHHhhcCCc--hHH---HHhcCHHHHHHhc--------ccCCCEEEEecCCCccCcchhhHHHHHHH
Confidence 88643210 0 00111223321 111 1234454444332 12579999999999999862 28999999
Q ss_pred HHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 732 MQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 732 L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
|++. |.++++.++++++|.+. .......+.+.|+.++|+
T Consensus 245 l~~~----------g~~~~~~~~~g~~H~~~----~~~~~l~~~l~~~~~~l~ 283 (283)
T 4b6g_A 245 CRAA----------NQPVDVRFHKGYDHSYY----FIASFIGEHIAYHAAFLK 283 (283)
T ss_dssp HHHH----------TCCCEEEEETTCCSSHH----HHHHHHHHHHHHHHTTCC
T ss_pred HHHc----------CCCceEEEeCCCCcCHh----HHHHHHHHHHHHHHHhcC
Confidence 9998 89999999999999863 223566788999988764
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.1e-19 Score=192.35 Aligned_cols=246 Identities=15% Similarity=0.119 Sum_probs=165.1
Q ss_pred CCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCC---CCCHHHHHHHHcCCeEEEEEeecCCCC
Q 003878 505 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP---SFSVSRTILMRHLGAVFCIANIRGGGE 581 (789)
Q Consensus 505 ~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~---~~~~~~~~~l~~~G~~v~~~~~RG~g~ 581 (789)
.+..+.+.+++.+| ..|.+.++.|++. .++.|+||++|||....... .|.. ....|+++|++|+.+|+||+|+
T Consensus 79 ~~~~~~~~~~~~~g-~~l~~~v~~p~~~--~~~~p~vv~iHGgg~~~g~~~~~~~~~-~~~~la~~g~~vv~~d~r~~gg 154 (361)
T 1jkm_A 79 DVETSTETILGVDG-NEITLHVFRPAGV--EGVLPGLVYTHGGGMTILTTDNRVHRR-WCTDLAAAGSVVVMVDFRNAWT 154 (361)
T ss_dssp CEEEEEEEEECTTS-CEEEEEEEEETTC--CSCEEEEEEECCSTTTSSCSSSHHHHH-HHHHHHHTTCEEEEEECCCSEE
T ss_pred CceeeeeeeecCCC-CeEEEEEEeCCCC--CCCCeEEEEEcCCccccCCCcccchhH-HHHHHHhCCCEEEEEecCCCCC
Confidence 35567788888899 8999999999863 23789999999986332222 2332 3344444999999999999874
Q ss_pred CChhHHhcccccCCcchHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHh-----CCCceeEEEecCCcc
Q 003878 582 YGEEWHKGGALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQ-----RPDLFGCALAHVGVM 653 (789)
Q Consensus 582 ~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~-----~pd~f~a~v~~~p~~ 653 (789)
+.. .......+.|+.++++|+.++- ..| +|+++|+|+||.+++.++.+ .|++++++|+.+|++
T Consensus 155 ~~~-------~~~~~~~~~D~~~~~~~v~~~~~~~~~~--~i~l~G~S~Gg~~a~~~a~~~~~~~~p~~i~~~il~~~~~ 225 (361)
T 1jkm_A 155 AEG-------HHPFPSGVEDCLAAVLWVDEHRESLGLS--GVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYI 225 (361)
T ss_dssp TTE-------ECCTTHHHHHHHHHHHHHHHTHHHHTEE--EEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCC
T ss_pred CCC-------CCCCCccHHHHHHHHHHHHhhHHhcCCC--eEEEEEECHHHHHHHHHHHHHHhcCCCcCcceEEEECCcc
Confidence 421 1223456799999999998762 234 99999999999999999988 888999999999998
Q ss_pred ccccccc----ccCCccchhhcCCC-CcHHHHHH-HH------------hcCcccCCCCCCCCCCCCCCCCCeEEEEecC
Q 003878 654 DMLRYHK----FTIGHAWVSDFGCS-EEEEEFYW-LI------------KYSPLHNVRRPWEQNPDKPFQYPSTLLLTAD 715 (789)
Q Consensus 654 d~~~~~~----~~~~~~~~~e~g~p-~~~~~~~~-l~------------~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~ 715 (789)
+...... ......+ .++..+ ........ +. ..+|........ ...+|+||++|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l-------~~l~P~Lii~G~ 297 (361)
T 1jkm_A 226 SGGYAWDHERRLTELPSL-VENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDEL-------RGLPPFVVAVNE 297 (361)
T ss_dssp CCCTTSCHHHHHHHCTHH-HHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHH-------TTCCCEEEEEET
T ss_pred ccccccccccccccCcch-hhccCcccCHHHHHHHHHHhCCCCCCCCCcccCccccChhhH-------cCCCceEEEEcC
Confidence 8721100 0000001 011111 11111111 11 123331100000 124699999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCC-Cc---hhhH-HHHHHHHHHHHHHHh
Q 003878 716 HDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVG-LP---TQKM-IDEAADRYGFMAKML 783 (789)
Q Consensus 716 ~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~-~~---~~~~-~~~~~~~~~fl~~~l 783 (789)
+|..++ ++.+++++|++. |.++++++++++||++. .. ..+. .+..+.+.+||.++.
T Consensus 298 ~D~~~~--~~~~~~~~l~~~----------g~~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~i~~fl~~~~ 358 (361)
T 1jkm_A 298 LDPLRD--EGIAFARRLARA----------GVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADRA 358 (361)
T ss_dssp TCTTHH--HHHHHHHHHHHT----------TCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchh--hHHHHHHHHHHc----------CCCEEEEEeCCCccCccccccccccHHHHHHHHHHHHHHHHhh
Confidence 999887 889999999987 88999999999999875 21 1222 456778899998764
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.9e-19 Score=186.38 Aligned_cols=234 Identities=15% Similarity=0.149 Sum_probs=164.3
Q ss_pred cEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhH
Q 003878 507 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 586 (789)
Q Consensus 507 ~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~ 586 (789)
..+.+.+++ +| .+|.++++.|+ +.|+||++||+.+... .|.. +...|.++||.|+.+|+||.|+.....
T Consensus 5 ~~~~~~~~~-~g-~~l~~~~~~p~------~~p~vv~~HG~~~~~~--~~~~-~~~~l~~~g~~v~~~d~~G~g~s~~~~ 73 (290)
T 3ksr_A 5 KLSSIEIPV-GQ-DELSGTLLTPT------GMPGVLFVHGWGGSQH--HSLV-RAREAVGLGCICMTFDLRGHEGYASMR 73 (290)
T ss_dssp EEEEEEEEE-TT-EEEEEEEEEEE------SEEEEEEECCTTCCTT--TTHH-HHHHHHTTTCEEECCCCTTSGGGGGGT
T ss_pred ceeeEEecC-CC-eEEEEEEecCC------CCcEEEEeCCCCCCcC--cHHH-HHHHHHHCCCEEEEeecCCCCCCCCCc
Confidence 356677776 78 99999999987 6799999999876533 3433 455666689999999999987654321
Q ss_pred HhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccC---
Q 003878 587 HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTI--- 663 (789)
Q Consensus 587 ~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~--- 663 (789)
.. .......+|+.+++++|.+++.+|+++|+++|+|+||.+++.++.++| .+++++.+|............
T Consensus 74 ~~----~~~~~~~~d~~~~i~~l~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~~--~~~~~l~~p~~~~~~~~~~~~~~~ 147 (290)
T 3ksr_A 74 QS----VTRAQNLDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP--VEWLALRSPALYKDAHWDQPKVSL 147 (290)
T ss_dssp TT----CBHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHTTTSC--CSEEEEESCCCCCSSCTTSBHHHH
T ss_pred cc----ccHHHHHHHHHHHHHHHHhcCCCCccceEEEEEchHHHHHHHHHHhCC--CCEEEEeCcchhhhhhhhcccccc
Confidence 11 111234689999999999988889999999999999999999999988 677777777665432221100
Q ss_pred --CccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCC
Q 003878 664 --GHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLE 741 (789)
Q Consensus 664 --~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~ 741 (789)
...+...+..+..... .++...+.+. .+|+|+++|.+|..|++.++.++++.++..
T Consensus 148 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~----------~~P~lii~G~~D~~v~~~~~~~~~~~~~~~------ 205 (290)
T 3ksr_A 148 NADPDLMDYRRRALAPGD------NLALAACAQY----------KGDVLLVEAENDVIVPHPVMRNYADAFTNA------ 205 (290)
T ss_dssp HHSTTHHHHTTSCCCGGG------CHHHHHHHHC----------CSEEEEEEETTCSSSCHHHHHHHHHHTTTS------
T ss_pred cCChhhhhhhhhhhhhcc------ccHHHHHHhc----------CCCeEEEEecCCcccChHHHHHHHHHhccC------
Confidence 0000001111111000 0111122223 579999999999999999999999988764
Q ss_pred CCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 742 NSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 742 ~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
+ ++++.+++++||.+..... .......+.+||.++++.
T Consensus 206 ----~-~~~~~~~~~~gH~~~~~~~-~~~~~~~i~~fl~~~~~~ 243 (290)
T 3ksr_A 206 ----R-SLTSRVIAGADHALSVKEH-QQEYTRALIDWLTEMVVG 243 (290)
T ss_dssp ----S-EEEEEEETTCCTTCCSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred ----C-CceEEEcCCCCCCCCcchH-HHHHHHHHHHHHHHHhcC
Confidence 4 7899999999998765433 246677889999998754
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-19 Score=187.99 Aligned_cols=244 Identities=11% Similarity=-0.004 Sum_probs=160.6
Q ss_pred CcEEEEEEec-CCCceEEEEEEEecCCCC----CCCCccEEEEEcCCCCccCCCCCCH--HHHHHHHcCCeEEEEEeecC
Q 003878 506 FHVHQVFVPS-KDGSTKIPMFIVSKKNIK----LDGSHPCLLYGYGGFNISVTPSFSV--SRTILMRHLGAVFCIANIRG 578 (789)
Q Consensus 506 ~~~~~~~~~s-~dg~~~i~~~l~~p~~~~----~~~~~P~ll~~hGg~~~~~~~~~~~--~~~~~l~~~G~~v~~~~~RG 578 (789)
+..+.+.+.+ ..| .++++.++.|++.. ++++.|+||++||+.+... .|.. ....++++.|++|+.+++|+
T Consensus 5 m~~~~~~~~s~~~~-~~~~~~v~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~ 81 (263)
T 2uz0_A 5 PAVMKIEYYSQVLD-MEWGVNVLYPDANRVEEPECEDIPVLYLLHGMSGNHN--SWLKRTNVERLLRGTNLIVVMPNTSN 81 (263)
T ss_dssp CEEEEEEEEETTTT-EEEEEEEEECC---------CCBCEEEEECCTTCCTT--HHHHHSCHHHHTTTCCCEEEECCCTT
T ss_pred ceEeEEEEechhhC-CceeEEEEeCCCccccCCcCCCCCEEEEECCCCCCHH--HHHhccCHHHHHhcCCeEEEEECCCC
Confidence 4556677765 468 89999999999752 3578899999999876533 2222 23456666899999999987
Q ss_pred CCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc
Q 003878 579 GGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY 658 (789)
Q Consensus 579 ~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~ 658 (789)
++..... . + ........+|+.+.++.+..+..+|+++++++|+|+||++++.++. +|++|+++|+.+|..++...
T Consensus 82 ~~~~~~~--~-~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~-~~~~~~~~v~~~~~~~~~~~ 156 (263)
T 2uz0_A 82 GWYTDTQ--Y-G-FDYYTALAEELPQVLKRFFPNMTSKREKTFIAGLSMGGYGCFKLAL-TTNRFSHAASFSGALSFQNF 156 (263)
T ss_dssp STTSBCT--T-S-CBHHHHHHTHHHHHHHHHCTTBCCCGGGEEEEEETHHHHHHHHHHH-HHCCCSEEEEESCCCCSSSC
T ss_pred CccccCC--C-c-ccHHHHHHHHHHHHHHHHhccccCCCCceEEEEEChHHHHHHHHHh-CccccceEEEecCCcchhhc
Confidence 6532110 0 0 0000111244555555544323468899999999999999999998 89999999999999886542
Q ss_pred cccc---CC-ccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHH
Q 003878 659 HKFT---IG-HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQY 734 (789)
Q Consensus 659 ~~~~---~~-~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~ 734 (789)
.... .. ..+...++.+... .+..++|...+.+. ...+|+|++||++|..|+ ++.+++++|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--------~~~~p~li~~G~~D~~v~--~~~~~~~~l~~ 222 (263)
T 2uz0_A 157 SPESQNLGSPAYWRGVFGEIRDW----TTSPYSLESLAKKS--------DKKTKLWAWCGEQDFLYE--ANNLAVKNLKK 222 (263)
T ss_dssp CGGGTTCSCHHHHHHHHCCCSCT----TTSTTSHHHHGGGC--------CSCSEEEEEEETTSTTHH--HHHHHHHHHHH
T ss_pred cccccccccchhHHHHcCChhhh----ccccCCHHHHHHhc--------cCCCeEEEEeCCCchhhH--HHHHHHHHHHH
Confidence 2100 00 0111123332211 12344555555543 113899999999999884 57899999998
Q ss_pred hhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCC
Q 003878 735 VLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 735 ~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
. |.++++.++++ ||.+.. ..+....+++||.++++..
T Consensus 223 ~----------g~~~~~~~~~g-~H~~~~----~~~~~~~~~~~l~~~l~~~ 259 (263)
T 2uz0_A 223 L----------GFDVTYSHSAG-THEWYY----WEKQLEVFLTTLPIDFKLE 259 (263)
T ss_dssp T----------TCEEEEEEESC-CSSHHH----HHHHHHHHHHHSSSCCCCC
T ss_pred C----------CCCeEEEECCC-CcCHHH----HHHHHHHHHHHHHhhccch
Confidence 7 88999999998 997631 2356678899999888765
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.1e-19 Score=181.14 Aligned_cols=235 Identities=13% Similarity=0.112 Sum_probs=154.5
Q ss_pred EEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcc
Q 003878 511 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGG 590 (789)
Q Consensus 511 ~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~ 590 (789)
+.++ .|| .+|.++++.|++. .++.|+||++||..+......|.. ....|.++||.|+.+|+||.|........
T Consensus 4 ~~~~-~~g-~~l~~~~~~p~~~--~~~~p~vvl~HG~~~~~~~~~~~~-~~~~l~~~g~~vi~~D~~G~G~S~~~~~~-- 76 (251)
T 2wtm_A 4 MYID-CDG-IKLNAYLDMPKNN--PEKCPLCIIIHGFTGHSEERHIVA-VQETLNEIGVATLRADMYGHGKSDGKFED-- 76 (251)
T ss_dssp EEEE-ETT-EEEEEEEECCTTC--CSSEEEEEEECCTTCCTTSHHHHH-HHHHHHHTTCEEEEECCTTSTTSSSCGGG--
T ss_pred eEEe-cCC-cEEEEEEEccCCC--CCCCCEEEEEcCCCcccccccHHH-HHHHHHHCCCEEEEecCCCCCCCCCcccc--
Confidence 4454 488 9999999988752 356799999999766522223333 34455558999999999998864322110
Q ss_pred cccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc----------
Q 003878 591 ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK---------- 660 (789)
Q Consensus 591 ~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~---------- 660 (789)
.......+|+.+++++|.+...+ ++++++|||+||.+++.++.++|++++++|+..|...+.....
T Consensus 77 --~~~~~~~~d~~~~~~~l~~~~~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~ 152 (251)
T 2wtm_A 77 --HTLFKWLTNILAVVDYAKKLDFV--TDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFD 152 (251)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCTTE--EEEEEEEETHHHHHHHHHHHHTTTTEEEEEEESCCTTHHHHHHHTEETTEECB
T ss_pred --CCHHHHHHHHHHHHHHHHcCccc--ceEEEEEECcchHHHHHHHHhCcccceEEEEECcHHHhHHHHhhhhhccccCC
Confidence 01112357888888888765333 4899999999999999999999999999999988754321100
Q ss_pred -ccCCccchhhc-CCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhcc
Q 003878 661 -FTIGHAWVSDF-GCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCT 738 (789)
Q Consensus 661 -~~~~~~~~~e~-g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~ 738 (789)
..... ....+ +.......+..+..+++...+.++ ..|+|+++|++|..||+..+.++.+.+.
T Consensus 153 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----------~~P~lii~G~~D~~v~~~~~~~~~~~~~----- 216 (251)
T 2wtm_A 153 PENIPD-ELDAWDGRKLKGNYVRVAQTIRVEDFVDKY----------TKPVLIVHGDQDEAVPYEASVAFSKQYK----- 216 (251)
T ss_dssp TTBCCS-EEEETTTEEEETHHHHHHTTCCHHHHHHHC----------CSCEEEEEETTCSSSCHHHHHHHHHHSS-----
T ss_pred chhcch-HHhhhhccccchHHHHHHHccCHHHHHHhc----------CCCEEEEEeCCCCCcChHHHHHHHHhCC-----
Confidence 00000 00011 100111122222233333333333 5799999999999999999888766543
Q ss_pred CCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 739 SLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 739 ~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
..++.+++++||.. ... ..+....+.+||.+++.
T Consensus 217 ---------~~~~~~~~~~gH~~-~~~--~~~~~~~i~~fl~~~~~ 250 (251)
T 2wtm_A 217 ---------NCKLVTIPGDTHCY-DHH--LELVTEAVKEFMLEQIA 250 (251)
T ss_dssp ---------SEEEEEETTCCTTC-TTT--HHHHHHHHHHHHHHHHC
T ss_pred ---------CcEEEEECCCCccc-chh--HHHHHHHHHHHHHHhcc
Confidence 35889999999998 432 24677889999988764
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-19 Score=190.87 Aligned_cols=213 Identities=11% Similarity=0.094 Sum_probs=151.7
Q ss_pred EEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCC-CCCHHHHHHHHcCCeEEEEEeecCCCCCChhH
Q 003878 508 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP-SFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 586 (789)
Q Consensus 508 ~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~-~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~ 586 (789)
...+.+. + ..+++.++.|++. .++.|+||++|||....... .+.. ....|.++||+|+.+|+||.++..
T Consensus 58 ~~~i~y~---~-~~~~~~~~~p~~~--~~~~p~vv~~HGgg~~~~~~~~~~~-~~~~l~~~G~~v~~~d~r~~~~~~--- 127 (303)
T 4e15_A 58 VDHLRYG---E-GRQLVDVFYSEKT--TNQAPLFVFVHGGYWQEMDMSMSCS-IVGPLVRRGYRVAVMDYNLCPQVT--- 127 (303)
T ss_dssp EEEEECS---S-TTCEEEEEECTTC--CTTCCEEEEECCSTTTSCCGGGSCT-THHHHHHTTCEEEEECCCCTTTSC---
T ss_pred eeeeccC---C-CCcEEEEEecCCC--CCCCCEEEEECCCcCcCCChhHHHH-HHHHHHhCCCEEEEecCCCCCCCC---
Confidence 3445554 4 4567788888752 46789999999986443332 2333 334455599999999999987643
Q ss_pred HhcccccCCcchHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhCC-------CceeEEEecCCccccccc
Q 003878 587 HKGGALAKKQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACINQRP-------DLFGCALAHVGVMDMLRY 658 (789)
Q Consensus 587 ~~~~~~~~~~~~~~D~~~~~~~L~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~p-------d~f~a~v~~~p~~d~~~~ 658 (789)
.....+|+.+++++|.+. ...++++|+++|+|+||.+++.++.+.+ ++++++|+.+|+.|+...
T Consensus 128 --------~~~~~~d~~~~~~~l~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~p~~~~v~~~v~~~~~~~~~~~ 199 (303)
T 4e15_A 128 --------LEQLMTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFLCGVYDLREL 199 (303)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEETHHHHHHGGGGGCTTTSCHHHHHTEEEEEEESCCCCCHHH
T ss_pred --------hhHHHHHHHHHHHHHHHHhhhcCCCeEEEEeecHHHHHHHHHHhccccccCcccccccEEEEEeeeeccHhh
Confidence 123468999999999873 2245889999999999999999887654 379999999999987554
Q ss_pred ccccCCccchhhcCCCCcHHHHHHHHhcCcc-cCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhc
Q 003878 659 HKFTIGHAWVSDFGCSEEEEEFYWLIKYSPL-HNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLC 737 (789)
Q Consensus 659 ~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~-~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~ 737 (789)
..... ......++... +. +...||. ..+.... ....+|+||+||++|..|++.++.+++++|++.
T Consensus 200 ~~~~~-~~~~~~~~~~~--~~---~~~~sp~~~~~~~~~------~~~~~P~lii~G~~D~~v~~~~~~~~~~~l~~~-- 265 (303)
T 4e15_A 200 SNLES-VNPKNILGLNE--RN---IESVSPMLWEYTDVT------VWNSTKIYVVAAEHDSTTFIEQSRHYADVLRKK-- 265 (303)
T ss_dssp HTCTT-TSGGGTTCCCT--TT---TTTTCGGGCCCCCGG------GGTTSEEEEEEEEESCHHHHHHHHHHHHHHHHH--
T ss_pred hcccc-cchhhhhcCCH--HH---HHHcCchhhcccccc------cCCCCCEEEEEeCCCCCCchHHHHHHHHHHHHC--
Confidence 32110 01112223221 11 2566787 4554310 012689999999999999999999999999998
Q ss_pred cCCCCCCCCCcEEEEEeCCCCcC
Q 003878 738 TSLENSPQTNPIIGRIERKAGHG 760 (789)
Q Consensus 738 ~~~~~~~~~~~~~l~~~~~~gH~ 760 (789)
|.++++++++++||.
T Consensus 266 --------g~~~~~~~~~g~~H~ 280 (303)
T 4e15_A 266 --------GYKASFTLFKGYDHF 280 (303)
T ss_dssp --------TCCEEEEEEEEEETT
T ss_pred --------CCceEEEEeCCCCch
Confidence 899999999999995
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=6e-18 Score=176.60 Aligned_cols=217 Identities=12% Similarity=-0.031 Sum_probs=151.9
Q ss_pred cEEEEEEecC-CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCC----HHHHHHHHcC----CeEEEEEeec
Q 003878 507 HVHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFS----VSRTILMRHL----GAVFCIANIR 577 (789)
Q Consensus 507 ~~~~~~~~s~-dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~----~~~~~~l~~~----G~~v~~~~~R 577 (789)
..+.+.+.+. +| ..+++.++.|++....++.|+||++||+.+........ ......+.++ |++|+.+|+|
T Consensus 31 ~~~~~~~~s~~~~-~~~~~~v~~P~~~~~~~~~P~vv~lHG~g~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~vv~~d~~ 109 (268)
T 1jjf_A 31 QVVNISYFSTATN-STRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNTN 109 (268)
T ss_dssp EEEEEEEEETTTT-EEEEEEEEECTTCCTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECCC
T ss_pred eEEEEEEeccccC-CceEEEEEeCCCCCCCCCccEEEEECCCCCCcchhhhccccHHHHHHHHHHcCCCCCEEEEEeCCC
Confidence 4567777764 68 89999999999865567899999999987654332211 1123333335 5999999999
Q ss_pred CCCCC-ChhHHhcccccCCcchHHH-HHHHHHHHHHcCCC--CCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 578 GGGEY-GEEWHKGGALAKKQNCFDD-FISASEYLISAGYT--QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 578 G~g~~-g~~~~~~~~~~~~~~~~~D-~~~~~~~L~~~~~~--d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
+.+.. ...| ....+| +.++++++.++.-+ |++||+|+|+|+||++++.++.++|++|+++|+.+|..
T Consensus 110 ~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~~~ 180 (268)
T 1jjf_A 110 AAGPGIADGY---------ENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAP 180 (268)
T ss_dssp CCCTTCSCHH---------HHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCCT
T ss_pred CCCccccccH---------HHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEECHHHHHHHHHHHhCchhhhheEEeCCCC
Confidence 86531 1111 011233 33456666554333 89999999999999999999999999999999999976
Q ss_pred cccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHH
Q 003878 654 DMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQ 733 (789)
Q Consensus 654 d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~ 733 (789)
++.. +...+..... . ... ..||+|++||++|..|+. +.+++++|+
T Consensus 181 ~~~~---------~~~~~~~~~~--~------------~~~----------~~pp~li~~G~~D~~v~~--~~~~~~~l~ 225 (268)
T 1jjf_A 181 NTYP---------NERLFPDGGK--A------------ARE----------KLKLLFIACGTNDSLIGF--GQRVHEYCV 225 (268)
T ss_dssp TSCC---------HHHHCTTTTH--H------------HHH----------HCSEEEEEEETTCTTHHH--HHHHHHHHH
T ss_pred CCCc---------hhhhcCcchh--h------------hhh----------cCceEEEEecCCCCCccH--HHHHHHHHH
Confidence 6421 1112221110 0 001 246899999999999874 678999999
Q ss_pred HhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHH
Q 003878 734 YVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 782 (789)
+. |.+++++++++++|++.. ..+.+.+++.||.++
T Consensus 226 ~~----------g~~~~~~~~~g~~H~~~~----~~~~~~~~~~~l~~~ 260 (268)
T 1jjf_A 226 AN----------NINHVYWLIQGGGHDFNV----WKPGLWNFLQMADEA 260 (268)
T ss_dssp HT----------TCCCEEEEETTCCSSHHH----HHHHHHHHHHHHHHH
T ss_pred HC----------CCceEEEEcCCCCcCHhH----HHHHHHHHHHHHHhc
Confidence 87 889999999999998732 235567788999876
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.4e-19 Score=187.59 Aligned_cols=229 Identities=16% Similarity=0.139 Sum_probs=158.0
Q ss_pred cEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCCHHHHHHHHcCCeEEEEEeecCCCCCChh
Q 003878 507 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 585 (789)
Q Consensus 507 ~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~ 585 (789)
..+.+.+++.+| .|++.++ +. .++.|+||++|||...... ..+......+..+.|+.|+.+|+||.|+..
T Consensus 55 ~~~~~~i~~~~g--~i~~~~y-~~----~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~Vv~~dyrg~g~~~-- 125 (311)
T 1jji_A 55 RVEDRTIKGRNG--DIRVRVY-QQ----KPDSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEHK-- 125 (311)
T ss_dssp EEEEEEEEETTE--EEEEEEE-ES----SSSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTTSC--
T ss_pred eEEEEEecCCCC--cEEEEEE-cC----CCCceEEEEECCcccccCChhHhHHHHHHHHHHhCCEEEEecCCCCCCCC--
Confidence 578888988777 7888888 43 3578999999998633222 233333333443579999999999988642
Q ss_pred HHhcccccCCcchHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhCCCc----eeEEEecCCccccccc
Q 003878 586 WHKGGALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQRPDL----FGCALAHVGVMDMLRY 658 (789)
Q Consensus 586 ~~~~~~~~~~~~~~~D~~~~~~~L~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~pd~----f~a~v~~~p~~d~~~~ 658 (789)
.....+|+.++++|+.+.. .+|+++|+|+|+|+||.+++.++.++|+. ++++|+.+|++++...
T Consensus 126 ---------~p~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~ 196 (311)
T 1jji_A 126 ---------FPAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNFVAP 196 (311)
T ss_dssp ---------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCCSSSC
T ss_pred ---------CCCcHHHHHHHHHHHHhhHHHhCCCchhEEEEEeCHHHHHHHHHHHHHHhcCCCCceEEEEeCCccCCCCC
Confidence 2335689999999998752 36888999999999999999999887776 9999999999886432
Q ss_pred ccccCCccchhhcCC-C--CcHHHHHHH-------------HhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCc
Q 003878 659 HKFTIGHAWVSDFGC-S--EEEEEFYWL-------------IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVP 722 (789)
Q Consensus 659 ~~~~~~~~~~~e~g~-p--~~~~~~~~l-------------~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~ 722 (789)
.. .+ .++.. + .......++ ...+|+. ... ...||+||++|++|..++
T Consensus 197 ~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~l--------~~~~P~li~~G~~D~l~~- 259 (311)
T 1jji_A 197 TP-----SL-LEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIF--ADL--------ENLPPALIITAEYDPLRD- 259 (311)
T ss_dssp CH-----HH-HHTSSSCSSCCHHHHHHHHHHHCSSGGGGGCTTTSGGG--SCC--------TTCCCEEEEEEEECTTHH-
T ss_pred Cc-----cH-HHhcCCCccCCHHHHHHHHHHhCCCCccCCCcccCccc--ccc--------cCCChheEEEcCcCcchH-
Confidence 11 00 00000 0 001111000 1124443 111 125899999999999873
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCc---hhhHHHHHHHHHHHHHH
Q 003878 723 LHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP---TQKMIDEAADRYGFMAK 781 (789)
Q Consensus 723 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~---~~~~~~~~~~~~~fl~~ 781 (789)
++.+++++|++. +.+++++++++++|++... .....+..+.+.+||.+
T Consensus 260 -~~~~~~~~l~~~----------g~~~~~~~~~g~~H~~~~~~~~~~~~~~~~~~i~~fl~~ 310 (311)
T 1jji_A 260 -EGEVFGQMLRRA----------GVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALLVF 310 (311)
T ss_dssp -HHHHHHHHHHHT----------TCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHc----------CCCEEEEEECCCCeeccccCCcCHHHHHHHHHHHHHHhh
Confidence 778899999988 8899999999999987532 12334566778888753
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-18 Score=176.41 Aligned_cols=237 Identities=12% Similarity=0.024 Sum_probs=160.5
Q ss_pred cEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhH
Q 003878 507 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 586 (789)
Q Consensus 507 ~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~ 586 (789)
..+.+.++ .+| .+|.++++.|++ .+.|+||++||..+......|. .....|.++||.|+++|+||.|......
T Consensus 21 ~~~~~~~~-~~g-~~l~~~~~~p~~----~~~p~vv~~HG~~~~~~~~~~~-~~~~~l~~~G~~v~~~d~~G~G~s~~~~ 93 (270)
T 3pfb_A 21 GMATITLE-RDG-LQLVGTREEPFG----EIYDMAIIFHGFTANRNTSLLR-EIANSLRDENIASVRFDFNGHGDSDGKF 93 (270)
T ss_dssp EEEEEEEE-ETT-EEEEEEEEECSS----SSEEEEEEECCTTCCTTCHHHH-HHHHHHHHTTCEEEEECCTTSTTSSSCG
T ss_pred cceEEEec-cCC-EEEEEEEEcCCC----CCCCEEEEEcCCCCCccccHHH-HHHHHHHhCCcEEEEEccccccCCCCCC
Confidence 34555555 589 999999998874 4589999999987653222233 3445555699999999999987654321
Q ss_pred HhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccc-----
Q 003878 587 HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKF----- 661 (789)
Q Consensus 587 ~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~----- 661 (789)
.. ..-....+|+.++++++.++. +.++++++|+|+||.+++.++.++|++++++|+..|..+.......
T Consensus 94 ~~----~~~~~~~~d~~~~i~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~ 167 (270)
T 3pfb_A 94 EN----MTVLNEIEDANAILNYVKTDP--HVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQG 167 (270)
T ss_dssp GG----CCHHHHHHHHHHHHHHHHTCT--TEEEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCTHHHHHHHHTEETT
T ss_pred Cc----cCHHHHHHhHHHHHHHHHhCc--CCCeEEEEEeCchhHHHHHHHHhCchhhcEEEEeccccccchhhhhhhhhc
Confidence 11 111233578889999998763 3359999999999999999999999999999999998765431100
Q ss_pred -cCCccch----hhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhh
Q 003878 662 -TIGHAWV----SDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVL 736 (789)
Q Consensus 662 -~~~~~~~----~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~ 736 (789)
.....+. ..............+..+.+...+..+ ..|+|+++|.+|..+|+..+.++.+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~P~l~i~g~~D~~~~~~~~~~~~~~~~--- 234 (270)
T 3pfb_A 168 VTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSAQF----------TKPVCLIHGTDDTVVSPNASKKYDQIYQ--- 234 (270)
T ss_dssp EECCTTSCCSEEEETTEEEEHHHHHHHHHCCHHHHHTTC----------CSCEEEEEETTCSSSCTHHHHHHHHHCS---
T ss_pred cccCcccccccccccccccchhHhhcccccCHHHHHhhC----------CccEEEEEcCCCCCCCHHHHHHHHHhCC---
Confidence 0000000 000001122233445555555556665 6899999999999999999888776643
Q ss_pred ccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHH
Q 003878 737 CTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 737 ~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 782 (789)
.+++.+++++||.+.... ..+....+.+||.++
T Consensus 235 -----------~~~~~~~~~~gH~~~~~~--~~~~~~~i~~fl~~~ 267 (270)
T 3pfb_A 235 -----------NSTLHLIEGADHCFSDSY--QKNAVNLTTDFLQNN 267 (270)
T ss_dssp -----------SEEEEEETTCCTTCCTHH--HHHHHHHHHHHHC--
T ss_pred -----------CCeEEEcCCCCcccCccc--hHHHHHHHHHHHhhc
Confidence 358999999999986332 245667788888654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-16 Score=169.51 Aligned_cols=308 Identities=10% Similarity=0.083 Sum_probs=195.1
Q ss_pred HhhhcCCCCCCceEeCCEEEEEEEcCC----CCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEE
Q 003878 75 TKLFDSPRYDAPFKRGNKYFYFHNTGL----QPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYAL 150 (789)
Q Consensus 75 ~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~ 150 (789)
+.++..+.++.|..+|.+++|...... .....||+.+..+++.+.| . .+..++|||||++|||+.
T Consensus 9 ~~l~~~~~~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l--~---------~~~~~~~SpDg~~la~~~ 77 (347)
T 2gop_A 9 KTFAKFAYLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI--E---------NATMPRISPDGKKIAFMR 77 (347)
T ss_dssp -CCCCSCEEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE--E---------SCEEEEECTTSSEEEEEE
T ss_pred ccceeeEEcccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc--c---------cCCCeEECCCCCEEEEEE
Confidence 444444555555559999999876432 2356789887665655544 1 146789999999999998
Q ss_pred ecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeee
Q 003878 151 SYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWS 230 (789)
Q Consensus 151 ~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~ 230 (789)
...++...+|+++|+++|+.... ....
T Consensus 78 ~~~~~~~~~l~~~~~~~g~~~~l--~~~~--------------------------------------------------- 104 (347)
T 2gop_A 78 ANEEKKVSEIWVADLETLSSKKI--LEAK--------------------------------------------------- 104 (347)
T ss_dssp EETTTTEEEEEEEETTTTEEEEE--EEES---------------------------------------------------
T ss_pred eccCCCcceEEEEECCCCceEEE--EcCC---------------------------------------------------
Confidence 76655678999999999865431 1110
Q ss_pred eecccccceEEEEeCCcEEEEEEccCCCCC-CC-CC------CCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeE
Q 003878 231 VVSQFKFSSIAWTHDSKGFFYSRYPAPKEG-KD-MD------AGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYI 302 (789)
Q Consensus 231 ~~~~~~~~~~~wspDg~~i~y~~~~~~~~~-~~-~~------~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~ 302 (789)
....++|||||+.|+|...+.++.. .. .. .+..-......+|+++++.++... ..+.. + .+
T Consensus 105 -----~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~-~~l~~-~----~~ 173 (347)
T 2gop_A 105 -----NIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI-EEFEK-P----RF 173 (347)
T ss_dssp -----EEEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE-EEEEE-E----TT
T ss_pred -----CccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE-eeecC-C----Cc
Confidence 0267899999999999875421100 00 00 000000012457999999765431 12222 2 13
Q ss_pred EEEEEecCCcEEEEEEEcCCC----C-ceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEE
Q 003878 303 FSGHVTEDGQYLVMCIEENCD----P-VNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLT 377 (789)
Q Consensus 303 ~~~~~SpDG~~l~~~~~~~~~----~-~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~t 377 (789)
..+.||||| +++....... . ..+||+++ ++. ...+..+ ..... ++|||+.|++.+
T Consensus 174 ~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~--------------~~~l~~~-~~~~~-~spdg~~l~~~~ 233 (347)
T 2gop_A 174 SSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGK--------------EEKMFEK-VSFYA-VDSDGERILLYG 233 (347)
T ss_dssp CEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTE--------------EEEEEEE-ESEEE-EEECSSCEEEEE
T ss_pred ccccCCCCe--EEEEEecccccccccccccEEEeC--CCc--------------eEEeccC-cceee-ECCCCCEEEEEE
Confidence 468999999 5555543321 1 46899999 431 2333333 22223 499999999988
Q ss_pred CCCC----CCceEEEEECCCCCCeEEeccCCCCceeee-EEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCee
Q 003878 378 NKDA----PKYKIIRVDLKEPNDWFEVIPEAERDVLES-ATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGS 452 (789)
Q Consensus 378 n~~~----~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~-v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~ 452 (789)
+... ...+|+.+| +++ .+.+++.. ...+.. +.|+ ++ +++....++..+|+ ++ + |+. ..+....+.
T Consensus 234 ~~~~~~~~~~~~l~~~d--~~~-~~~l~~~~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~-~-g~~-~~~~~~~~~ 303 (347)
T 2gop_A 234 KPEKKYMSEHNKLYIYD--GKE-VMGILDEV-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW-D-GEI-KPIAKGRHW 303 (347)
T ss_dssp CCSSSCCCSSCEEEEEC--SSC-EEESSTTC-CSEEEEEEEET-TE-EEEEEEETTEEEEE-EE-S-SSE-EEEECSSSE
T ss_pred ccccCCccccceEEEEC--CCc-eEeccccC-CcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec-C-Cce-EEEecCCCe
Confidence 7532 357899999 444 56666553 345665 7777 56 88888999988888 88 4 765 444434667
Q ss_pred EEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEeee
Q 003878 453 VNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFRE 495 (789)
Q Consensus 453 v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~~ 495 (789)
+..+++++ .++++.++..+|.++|.+| ++ .+.++.
T Consensus 304 v~~~~~s~---~~~~~~~~~~~~~~l~~~~---g~--~~~lt~ 338 (347)
T 2gop_A 304 IMGFDVDE---IVVYLKETATRLRELFTWD---GE--EKQLTD 338 (347)
T ss_dssp EEEEEESS---SEEEEEECSSSCCEEEEES---SS--EEECCC
T ss_pred EEeeeeeC---cEEEEEcCCCChHHheEeC---Cc--EEEecc
Confidence 77788877 4788888999999999998 53 455553
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.4e-18 Score=180.17 Aligned_cols=249 Identities=14% Similarity=0.079 Sum_probs=164.7
Q ss_pred cEEEEEEecC-CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHH--HHHHHHcCCeEEEEEeecCCCCCC
Q 003878 507 HVHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVS--RTILMRHLGAVFCIANIRGGGEYG 583 (789)
Q Consensus 507 ~~~~~~~~s~-dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~--~~~~l~~~G~~v~~~~~RG~g~~g 583 (789)
.++.+.+.|. .| .+|+++ +.|.. ++.|+|+++||+.+......|... ...++++.|++|+++|.++++.|.
T Consensus 8 ~v~~~~~~S~~~~-~~i~v~-~~p~~----~~~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~p~~~~~~~~~ 81 (304)
T 1sfr_A 8 PVEYLQVPSPSMG-RDIKVQ-FQSGG----ANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYS 81 (304)
T ss_dssp CCEEEEEEETTTT-EEEEEE-EECCS----TTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCTTC
T ss_pred eEEEEEEECccCC-CceEEE-ECCCC----CCCCEEEEeCCCCCCCCcchhhcCCCHHHHHhcCCeEEEEECCCCCcccc
Confidence 3456667665 57 788877 44443 578999999998432222222221 235676689999999998765442
Q ss_pred hhHHhcccc--cCCcchHHHHH--HHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc
Q 003878 584 EEWHKGGAL--AKKQNCFDDFI--SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH 659 (789)
Q Consensus 584 ~~~~~~~~~--~~~~~~~~D~~--~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~ 659 (789)
.|...... ......+.+++ +++.++.++--+++++++|+|+|+||++++.++.++|++|+++|+.+|.+++....
T Consensus 82 -~~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~ 160 (304)
T 1sfr_A 82 -DWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQAM 160 (304)
T ss_dssp -BCSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTSTT
T ss_pred -ccCCccccccccccccHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCccccc
Confidence 12111000 00123455543 34444444323678899999999999999999999999999999999988754311
Q ss_pred -c--------ccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCC------------
Q 003878 660 -K--------FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDD------------ 718 (789)
Q Consensus 660 -~--------~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~------------ 718 (789)
. ......+...||.+... .+.+.+|..++.+.. ...+|+++.+|+.|+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~p~~~~~~l~-------~~~~pi~l~~G~~D~~~~~~~~~~~~~ 229 (304)
T 1sfr_A 161 GPTLIGLAMGDAGGYKASDMWGPKEDP----AWQRNDPLLNVGKLI-------ANNTRVWVYCGNGKPSDLGGNNLPAKF 229 (304)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHCSTTST----HHHHSCTTTTHHHHH-------HHTCEEEEECCCSCCBTTBCCSHHHHH
T ss_pred hhhhhhHhhhhccccchHHhcCCcchh----hhHhcCHHHHHHHhh-------hcCCeEEEEecCCCCccccccccccch
Confidence 0 00000112345655332 245677876554310 014799999999998
Q ss_pred --CCCcHHHHHHHHHHHHhhccCCCCCCCC-CcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCCC
Q 003878 719 --RVVPLHSLKLLATMQYVLCTSLENSPQT-NPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASW 787 (789)
Q Consensus 719 --~V~~~~~~~~~~~L~~~~~~~~~~~~~~-~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~ 787 (789)
+|+..++.+++++|++. | .++++.++++++|.+. ...+.+.+.+.||.+.|+...
T Consensus 230 ~e~~~~~~~~~~~~~L~~~----------G~~~v~~~~~~~g~H~~~----~w~~~l~~~l~~l~~~l~~~~ 287 (304)
T 1sfr_A 230 LEGFVRTSNIKFQDAYNAG----------GGHNGVFDFPDSGTHSWE----YWGAQLNAMKPDLQRALGATP 287 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHT----------TCCSEEEECCSCCCSSHH----HHHHHHHHTHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHHHHHhC----------CCCceEEEecCCCccCHH----HHHHHHHHHHHHHHHhcCCCc
Confidence 67889999999999998 8 9999999988899752 124566788999999998653
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-17 Score=172.10 Aligned_cols=231 Identities=13% Similarity=0.065 Sum_probs=157.2
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccC-CCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHH
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV-TPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWH 587 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~-~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~ 587 (789)
.+..+.+.|| .+|++.++.|++ .++.|+||++||+..... ...+......++.+. |.|+.+|+||+++...
T Consensus 4 ~~~~~~~~dg-~~l~~~~~~p~~---~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~l~~~-~~v~~~d~~~~~~~~~--- 75 (275)
T 3h04_A 4 IKYKVITKDA-FALPYTIIKAKN---QPTKGVIVYIHGGGLMFGKANDLSPQYIDILTEH-YDLIQLSYRLLPEVSL--- 75 (275)
T ss_dssp EEEEEECTTS-CEEEEEEECCSS---SSCSEEEEEECCSTTTSCCTTCSCHHHHHHHTTT-EEEEEECCCCTTTSCH---
T ss_pred eEEEEecCCc-EEEEEEEEccCC---CCCCCEEEEEECCcccCCchhhhHHHHHHHHHhC-ceEEeeccccCCcccc---
Confidence 4566788899 999999999875 357899999999863322 334444566777744 9999999998875321
Q ss_pred hcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccccc-----
Q 003878 588 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT----- 662 (789)
Q Consensus 588 ~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~----- 662 (789)
....+|+.++++++.+. .+.++++++|+|+||.+++.++.+ ++++++|+.+|+.++.......
T Consensus 76 --------~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~--~~v~~~v~~~~~~~~~~~~~~~~~~~~ 143 (275)
T 3h04_A 76 --------DCIIEDVYASFDAIQSQ--YSNCPIFTFGRSSGAYLSLLIARD--RDIDGVIDFYGYSRINTEPFKTTNSYY 143 (275)
T ss_dssp --------HHHHHHHHHHHHHHHHT--TTTSCEEEEEETHHHHHHHHHHHH--SCCSEEEEESCCSCSCSHHHHSCCHHH
T ss_pred --------chhHHHHHHHHHHHHhh--CCCCCEEEEEecHHHHHHHHHhcc--CCccEEEeccccccccccccccccchh
Confidence 23578999999999987 567899999999999999999998 7899999999988763221000
Q ss_pred ------CCccchhhc------C-CC--CcHHHHHHHHh-------cCcc-----------cCCCCCCCCCCCCCCCCCeE
Q 003878 663 ------IGHAWVSDF------G-CS--EEEEEFYWLIK-------YSPL-----------HNVRRPWEQNPDKPFQYPST 709 (789)
Q Consensus 663 ------~~~~~~~e~------g-~p--~~~~~~~~l~~-------~sP~-----------~~v~~~~~~~~~~~~~~pp~ 709 (789)
........+ . .+ .....+..... +... ..+.. .+|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~P~ 212 (275)
T 3h04_A 144 AKIAQSINETMIAQLTSPTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKT-----------LPPV 212 (275)
T ss_dssp HHHHTTSCHHHHHTTSCSSCCSSCSSGGGHHHHHHHHHHTCHHHHHCCSCTTSGGGSCCHHHHTT-----------CCCE
T ss_pred hcccccchHHHHhcccCCCCcCCCccccchhhhhhhhhcCchHHhhccccccccccccccchhcc-----------CCCE
Confidence 000000000 0 00 00011100111 1100 00122 2399
Q ss_pred EEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchh-hHHHHHHHHHHHHHHHhC
Q 003878 710 LLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQ-KMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 710 Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~-~~~~~~~~~~~fl~~~l~ 784 (789)
|+++|++|..||+.++.++++++.. ..+.+++++||.+..... ...+....+.+||.+++.
T Consensus 213 lii~G~~D~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 274 (275)
T 3h04_A 213 FIAHCNGDYDVPVEESEHIMNHVPH--------------STFERVNKNEHDFDRRPNDEAITIYRKVVDFLNAITM 274 (275)
T ss_dssp EEEEETTCSSSCTHHHHHHHTTCSS--------------EEEEEECSSCSCTTSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred EEEecCCCCCCChHHHHHHHHhcCC--------------ceEEEeCCCCCCcccCCchhHHHHHHHHHHHHHHHhc
Confidence 9999999999999998888765442 468999999999765433 124677889999998874
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.78 E-value=9e-18 Score=167.67 Aligned_cols=200 Identities=11% Similarity=0.041 Sum_probs=145.1
Q ss_pred EEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCc--cCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChh
Q 003878 508 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI--SVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 585 (789)
Q Consensus 508 ~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~--~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~ 585 (789)
.+.+.+++.|| +|+++++.|++ .++.|+||++||+... .....+...+...+.++||.|+.+|+||.|.....
T Consensus 6 ~~~~~~~~~~g--~l~~~~~~p~~---~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~ 80 (208)
T 3trd_A 6 NEDFLIQGPVG--QLEVMITRPKG---IEKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGVGKSQGR 80 (208)
T ss_dssp SSCEEEECSSS--EEEEEEECCSS---CCCSEEEEEECSCGGGTCCTTCHHHHHHHHHHHHTTCEEEEECCTTSTTCCSC
T ss_pred cceEEEECCCc--eEEEEEEcCCC---CCCCCEEEEEcCCCCCCCccCCchHHHHHHHHHHCCCEEEEEecCCCCCCCCC
Confidence 45678888888 89999998875 3478999999996322 11111112345556669999999999998765432
Q ss_pred HHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCc
Q 003878 586 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGH 665 (789)
Q Consensus 586 ~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~ 665 (789)
+ .......+|+.+++++|.++ .+.++++++|+|+||.+++.++ ++| .++++|+..|..+.
T Consensus 81 ~------~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a-~~~-~v~~~v~~~~~~~~---------- 140 (208)
T 3trd_A 81 Y------DNGVGEVEDLKAVLRWVEHH--WSQDDIWLAGFSFGAYISAKVA-YDQ-KVAQLISVAPPVFY---------- 140 (208)
T ss_dssp C------CTTTHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHH-HHS-CCSEEEEESCCTTS----------
T ss_pred c------cchHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCHHHHHHHHHh-ccC-CccEEEEecccccc----------
Confidence 1 22345579999999999987 3458999999999999999999 668 89999988886621
Q ss_pred cchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCC
Q 003878 666 AWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQ 745 (789)
Q Consensus 666 ~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~ 745 (789)
| ++..+... ..|+|+++|++|..||+.++.++++++..
T Consensus 141 -~--------------------~~~~~~~~----------~~p~l~i~g~~D~~~~~~~~~~~~~~~~~----------- 178 (208)
T 3trd_A 141 -E--------------------GFASLTQM----------ASPWLIVQGDQDEVVPFEQVKAFVNQISS----------- 178 (208)
T ss_dssp -G--------------------GGTTCCSC----------CSCEEEEEETTCSSSCHHHHHHHHHHSSS-----------
T ss_pred -C--------------------Cchhhhhc----------CCCEEEEECCCCCCCCHHHHHHHHHHccC-----------
Confidence 1 00112222 57999999999999999998888776542
Q ss_pred CCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHH
Q 003878 746 TNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFM 779 (789)
Q Consensus 746 ~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl 779 (789)
.+++.+++++||.+.... .+....+.+||
T Consensus 179 --~~~~~~~~~~~H~~~~~~---~~~~~~i~~fl 207 (208)
T 3trd_A 179 --PVEFVVMSGASHFFHGRL---IELRELLVRNL 207 (208)
T ss_dssp --CCEEEEETTCCSSCTTCH---HHHHHHHHHHH
T ss_pred --ceEEEEeCCCCCcccccH---HHHHHHHHHHh
Confidence 268999999999987543 23444555665
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.4e-18 Score=188.39 Aligned_cols=240 Identities=11% Similarity=0.120 Sum_probs=164.8
Q ss_pred cEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHH-HHHHHcCCeEEEEEeecCCCCCChh
Q 003878 507 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSR-TILMRHLGAVFCIANIRGGGEYGEE 585 (789)
Q Consensus 507 ~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~-~~~l~~~G~~v~~~~~RG~g~~g~~ 585 (789)
..+.+.++. +| .+|+++++.+ + .++.|+||++||..+..... .... ..++. +||.|+++|+||.|+....
T Consensus 134 ~~~~~~i~~-~~-~~l~~~~~~~-~---~~~~p~vv~~HG~~~~~~~~--~~~~~~~~~~-~g~~vi~~D~~G~G~s~~~ 204 (405)
T 3fnb_A 134 PLKSIEVPF-EG-ELLPGYAIIS-E---DKAQDTLIVVGGGDTSREDL--FYMLGYSGWE-HDYNVLMVDLPGQGKNPNQ 204 (405)
T ss_dssp CCEEEEEEE-TT-EEEEEEEECC-S---SSCCCEEEEECCSSCCHHHH--HHHTHHHHHH-TTCEEEEECCTTSTTGGGG
T ss_pred CcEEEEEeE-CC-eEEEEEEEcC-C---CCCCCEEEEECCCCCCHHHH--HHHHHHHHHh-CCcEEEEEcCCCCcCCCCC
Confidence 456777776 68 8999988743 2 24569999999975443221 1111 24455 9999999999998864211
Q ss_pred HHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCC-
Q 003878 586 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG- 664 (789)
Q Consensus 586 ~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~- 664 (789)
.........+|+.+++++|...+ ++|+++|+|+||++++.++.++| +++++|+..|+.++.........
T Consensus 205 -----~~~~~~~~~~d~~~~~~~l~~~~----~~v~l~G~S~GG~~a~~~a~~~p-~v~~~v~~~p~~~~~~~~~~~~~~ 274 (405)
T 3fnb_A 205 -----GLHFEVDARAAISAILDWYQAPT----EKIAIAGFSGGGYFTAQAVEKDK-RIKAWIASTPIYDVAEVFRISFST 274 (405)
T ss_dssp -----TCCCCSCTHHHHHHHHHHCCCSS----SCEEEEEETTHHHHHHHHHTTCT-TCCEEEEESCCSCHHHHHHHHCC-
T ss_pred -----CCCCCccHHHHHHHHHHHHHhcC----CCEEEEEEChhHHHHHHHHhcCc-CeEEEEEecCcCCHHHHHHHhhhh
Confidence 11222345788999999988764 68999999999999999999999 89999999999987543210000
Q ss_pred ----ccc-----------------------hhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCC
Q 003878 665 ----HAW-----------------------VSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHD 717 (789)
Q Consensus 665 ----~~~-----------------------~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D 717 (789)
+.+ ...++........+.+..+++...+.++ .+|+|+++|.+|
T Consensus 275 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~PvLii~G~~D 344 (405)
T 3fnb_A 275 ALKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKI----------DVPSLFLVGAGE 344 (405)
T ss_dssp -----------------CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHCCCCCGGGC----------CSCEEEEEETTS
T ss_pred hhhCcHHHHHHHHHHhhccchhHHHHHHHhhhhcCCCCHHHHHHHHHHhhcccCHhhC----------CCCEEEEecCCC
Confidence 000 0012222222223344455554445554 689999999999
Q ss_pred CCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCC-chhhHHHHHHHHHHHHHHHhCC
Q 003878 718 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL-PTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 718 ~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~-~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
..||+.++.+++++|+.. +.++++.++++..|+... ...........+.+||.++++.
T Consensus 345 ~~v~~~~~~~l~~~l~~~----------~~~~~l~~~~~~~h~gh~~~~~~~~~~~~~i~~fL~~~l~~ 403 (405)
T 3fnb_A 345 DSELMRQSQVLYDNFKQR----------GIDVTLRKFSSESGADAHCQVNNFRLMHYQVFEWLNHIFKK 403 (405)
T ss_dssp CHHHHHHHHHHHHHHHHT----------TCCEEEEEECTTTTCCSGGGGGGHHHHHHHHHHHHHHHHC-
T ss_pred cCCChHHHHHHHHHhccC----------CCCceEEEEcCCccchhccccchHHHHHHHHHHHHHHHhCc
Confidence 999999999999999987 788999999666554321 1222346678899999999875
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=172.72 Aligned_cols=207 Identities=16% Similarity=0.082 Sum_probs=156.0
Q ss_pred CCCcEEEEEEecC--CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCC
Q 003878 504 SEFHVHQVFVPSK--DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGE 581 (789)
Q Consensus 504 ~~~~~~~~~~~s~--dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~ 581 (789)
..+..+.+.+++. +| .. .+.+++|... ..++.|+||++||..+... .|.. ....|.++||.|+++|+||.|.
T Consensus 21 g~~~~~~~~~~~~~~~~-~~-~~~l~~p~~~-~~~~~p~vv~~HG~~~~~~--~~~~-~~~~l~~~G~~v~~~d~~g~g~ 94 (262)
T 1jfr_A 21 GPYATSQTSVSSLVASG-FG-GGTIYYPTST-ADGTFGAVVISPGFTAYQS--SIAW-LGPRLASQGFVVFTIDTNTTLD 94 (262)
T ss_dssp CSSCEEEEEECTTTCSS-SC-CEEEEEESCC-TTCCEEEEEEECCTTCCGG--GTTT-HHHHHHTTTCEEEEECCSSTTC
T ss_pred CCCCccceEecceeccC-CC-ceeEEecCCC-CCCCCCEEEEeCCcCCCch--hHHH-HHHHHHhCCCEEEEeCCCCCCC
Confidence 3466677777765 44 22 4677888763 2467899999999876544 2333 3455666899999999999775
Q ss_pred CChhHHhcccccCCcchHHHHHHHHHHHHH----cCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccc
Q 003878 582 YGEEWHKGGALAKKQNCFDDFISASEYLIS----AGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 657 (789)
Q Consensus 582 ~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~----~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~ 657 (789)
... ....|+.+++++|.+ ....+.++++++|+|+||.+++.++.++|+ ++++|+..|+..
T Consensus 95 ~~~------------~~~~d~~~~~~~l~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~p~~~--- 158 (262)
T 1jfr_A 95 QPD------------SRGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTS-LKAAIPLTGWNT--- 158 (262)
T ss_dssp CHH------------HHHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS---
T ss_pred CCc------------hhHHHHHHHHHHHHhccccccccCcccEEEEEEChhHHHHHHHHhcCcc-ceEEEeecccCc---
Confidence 432 224688899999988 344678899999999999999999999998 899988776431
Q ss_pred cccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHH-HHHHHHHHHHhh
Q 003878 658 YHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH-SLKLLATMQYVL 736 (789)
Q Consensus 658 ~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~-~~~~~~~L~~~~ 736 (789)
...+.+. .+|+|+++|++|..+++.+ +.++++.++.
T Consensus 159 -------------------------------~~~~~~~----------~~P~l~i~G~~D~~~~~~~~~~~~~~~l~~-- 195 (262)
T 1jfr_A 159 -------------------------------DKTWPEL----------RTPTLVVGADGDTVAPVATHSKPFYESLPG-- 195 (262)
T ss_dssp -------------------------------CCCCTTC----------CSCEEEEEETTCSSSCTTTTHHHHHHHSCT--
T ss_pred -------------------------------ccccccc----------CCCEEEEecCccccCCchhhHHHHHHHhhc--
Confidence 1222333 5799999999999999998 9999988843
Q ss_pred ccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCC
Q 003878 737 CTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 737 ~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
+.++++.+++++||.+..... .+....+.+||.++++..
T Consensus 196 ---------~~~~~~~~~~~~~H~~~~~~~--~~~~~~i~~fl~~~l~~~ 234 (262)
T 1jfr_A 196 ---------SLDKAYLELRGASHFTPNTSD--TTIAKYSISWLKRFIDSD 234 (262)
T ss_dssp ---------TSCEEEEEETTCCTTGGGSCC--HHHHHHHHHHHHHHHSCC
T ss_pred ---------CCCceEEEeCCCCcCCcccch--HHHHHHHHHHHHHHhcCc
Confidence 567899999999998765433 356788999999998754
|
| >4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=175.41 Aligned_cols=186 Identities=9% Similarity=0.039 Sum_probs=128.8
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHH----HHH
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEY----LIS 611 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~----L~~ 611 (789)
...|+||++||..+... .|.. +...|...|+.|++|+.+|.+.|+..+..... .....+++..+.++. +.+
T Consensus 20 ~a~~~Vv~lHG~G~~~~--~~~~-l~~~l~~~~~~v~~P~~~g~~w~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~ 94 (210)
T 4h0c_A 20 RAKKAVVMLHGRGGTAA--DIIS-LQKVLKLDEMAIYAPQATNNSWYPYSFMAPVQ--QNQPALDSALALVGEVVAEIEA 94 (210)
T ss_dssp TCSEEEEEECCTTCCHH--HHHG-GGGTSSCTTEEEEEECCGGGCSSSSCTTSCGG--GGTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHH--HHHH-HHHHhCCCCeEEEeecCCCCCccccccCCCcc--cchHHHHHHHHHHHHHHHHHHH
Confidence 45689999999433211 1111 22334457999999999987766544433221 122334444444444 334
Q ss_pred cCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccC
Q 003878 612 AGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHN 691 (789)
Q Consensus 612 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~ 691 (789)
. .+|++||+++|+|+||.+++.++.++|++|+++|+.++.+..... ... ..
T Consensus 95 ~-~i~~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~vv~~sg~l~~~~~-----------------~~~-----------~~ 145 (210)
T 4h0c_A 95 Q-GIPAEQIYFAGFSQGACLTLEYTTRNARKYGGIIAFTGGLIGQEL-----------------AIG-----------NY 145 (210)
T ss_dssp T-TCCGGGEEEEEETHHHHHHHHHHHHTBSCCSEEEEETCCCCSSSC-----------------CGG-----------GC
T ss_pred h-CCChhhEEEEEcCCCcchHHHHHHhCcccCCEEEEecCCCCChhh-----------------hhh-----------hh
Confidence 4 479999999999999999999999999999999988774321000 000 00
Q ss_pred CCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHH
Q 003878 692 VRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDE 771 (789)
Q Consensus 692 v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~ 771 (789)
.... ..+|+|++||++|++||++++++++++|++. |.++++++||+.||+... ++
T Consensus 146 ~~~~---------~~~Pvl~~hG~~D~~vp~~~~~~~~~~L~~~----------g~~v~~~~ypg~gH~i~~------~e 200 (210)
T 4h0c_A 146 KGDF---------KQTPVFISTGNPDPHVPVSRVQESVTILEDM----------NAAVSQVVYPGRPHTISG------DE 200 (210)
T ss_dssp CBCC---------TTCEEEEEEEESCTTSCHHHHHHHHHHHHHT----------TCEEEEEEEETCCSSCCH------HH
T ss_pred hhhc---------cCCceEEEecCCCCccCHHHHHHHHHHHHHC----------CCCeEEEEECCCCCCcCH------HH
Confidence 0011 2579999999999999999999999999998 999999999999998742 34
Q ss_pred HHHHHHHHH
Q 003878 772 AADRYGFMA 780 (789)
Q Consensus 772 ~~~~~~fl~ 780 (789)
++.+.+||.
T Consensus 201 l~~i~~wL~ 209 (210)
T 4h0c_A 201 IQLVNNTIL 209 (210)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHHc
Confidence 556677764
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=167.41 Aligned_cols=208 Identities=13% Similarity=0.041 Sum_probs=153.4
Q ss_pred cEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCcc--CCCCCCHHHHHHHHcCCeEEEEEeecCCCCCCh
Q 003878 507 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNIS--VTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE 584 (789)
Q Consensus 507 ~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~--~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~ 584 (789)
..+.+.+++.|| +++++++.|++.. .++.|+||++||+.... ....+.......|.++||.|+++|+||.|....
T Consensus 9 ~~~~~~~~~~~g--~~~~~~~~p~~~~-~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~ 85 (220)
T 2fuk_A 9 ESAALTLDGPVG--PLDVAVDLPEPDV-AVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAG 85 (220)
T ss_dssp SCEEEEEEETTE--EEEEEEECCCTTS-CCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCS
T ss_pred cceEEEEeCCCC--eEEEEEEeCCCCC-ccccCEEEEECCCCCcCCcccchHHHHHHHHHHHCCCeEEEEecCCCCCCCC
Confidence 457788888887 7999999987621 14589999999964221 121111234556666899999999999876543
Q ss_pred hHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCC
Q 003878 585 EWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 664 (789)
Q Consensus 585 ~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~ 664 (789)
.+ .......+|+.+++++|.++. +.++++++|+|+||.+++.++.++ .++++|+..|..+...
T Consensus 86 ~~------~~~~~~~~d~~~~~~~l~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~--~v~~~v~~~~~~~~~~------- 148 (220)
T 2fuk_A 86 SF------DHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWD------- 148 (220)
T ss_dssp CC------CTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBC-------
T ss_pred Cc------ccCchhHHHHHHHHHHHHhcC--CCCcEEEEEECHHHHHHHHHHhhc--cccEEEEecccccchh-------
Confidence 22 222445799999999999874 667999999999999999999886 7999999888765322
Q ss_pred ccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCC
Q 003878 665 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSP 744 (789)
Q Consensus 665 ~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~ 744 (789)
+..+.. ..|+|+++|++|..||+.++.+++++++
T Consensus 149 ------------------------~~~~~~-----------~~p~l~i~g~~D~~~~~~~~~~~~~~~~----------- 182 (220)
T 2fuk_A 149 ------------------------FSDVQP-----------PAQWLVIQGDADEIVDPQAVYDWLETLE----------- 182 (220)
T ss_dssp ------------------------CTTCCC-----------CSSEEEEEETTCSSSCHHHHHHHHTTCS-----------
T ss_pred ------------------------hhhccc-----------CCcEEEEECCCCcccCHHHHHHHHHHhC-----------
Confidence 111111 3579999999999999998888876653
Q ss_pred CCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 745 QTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 745 ~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
..+++.+++++||.+... . .+....+.+||.+++..
T Consensus 183 --~~~~~~~~~~~~H~~~~~-~--~~~~~~i~~~l~~~l~~ 218 (220)
T 2fuk_A 183 --QQPTLVRMPDTSHFFHRK-L--IDLRGALQHGVRRWLPA 218 (220)
T ss_dssp --SCCEEEEETTCCTTCTTC-H--HHHHHHHHHHHGGGCSS
T ss_pred --cCCcEEEeCCCCceehhh-H--HHHHHHHHHHHHHHhhc
Confidence 245889999999998663 2 35667888999888754
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=178.09 Aligned_cols=203 Identities=16% Similarity=0.074 Sum_probs=152.6
Q ss_pred CcEEEEEEec--CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCC
Q 003878 506 FHVHQVFVPS--KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 583 (789)
Q Consensus 506 ~~~~~~~~~s--~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g 583 (789)
+......+.. .+| .. ...+++|.+. .+.|+||++||..+... .|. .....|.++||.|+.+|+||.|+..
T Consensus 67 ~~~~~~~~~~~~~~g-~~-~~~~~~p~~~---~~~p~vv~~HG~~~~~~--~~~-~~~~~la~~G~~vv~~d~~g~g~s~ 138 (306)
T 3vis_A 67 FSVSEERASRFGADG-FG-GGTIYYPREN---NTYGAIAISPGYTGTQS--SIA-WLGERIASHGFVVIAIDTNTTLDQP 138 (306)
T ss_dssp SCEEEEEECTTTCSS-SC-CEEEEEESSC---SCEEEEEEECCTTCCHH--HHH-HHHHHHHTTTEEEEEECCSSTTCCH
T ss_pred ccceeeeeeccccCC-Cc-ceEEEeeCCC---CCCCEEEEeCCCcCCHH--HHH-HHHHHHHhCCCEEEEecCCCCCCCc
Confidence 3344444432 556 33 3677888763 37899999999765432 222 3455666699999999999977643
Q ss_pred hhHHhcccccCCcchHHHHHHHHHHHHHc------CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccc
Q 003878 584 EEWHKGGALAKKQNCFDDFISASEYLISA------GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 657 (789)
Q Consensus 584 ~~~~~~~~~~~~~~~~~D~~~~~~~L~~~------~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~ 657 (789)
.. ..+|+.+++++|.+. ..+|+++|+++|+|+||.+++.++.++|+ ++++|+..|+..
T Consensus 139 ~~------------~~~d~~~~~~~l~~~~~~~~~~~~~~~~v~l~G~S~GG~~a~~~a~~~p~-v~~~v~~~~~~~--- 202 (306)
T 3vis_A 139 DS------------RARQLNAALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD-LKAAIPLTPWHL--- 202 (306)
T ss_dssp HH------------HHHHHHHHHHHHHHTSCHHHHTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS---
T ss_pred ch------------HHHHHHHHHHHHHhhcchhhhccCCcccEEEEEEChhHHHHHHHHhhCCC-eeEEEEeccccC---
Confidence 22 237889999999987 67889999999999999999999999998 888888777432
Q ss_pred cccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcH-HHHHHHHHHHHhh
Q 003878 658 YHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPL-HSLKLLATMQYVL 736 (789)
Q Consensus 658 ~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~-~~~~~~~~L~~~~ 736 (789)
...+.++ .+|+|+++|++|..+|+. ++.+++++++..
T Consensus 203 -------------------------------~~~~~~~----------~~P~lii~G~~D~~~~~~~~~~~~~~~l~~~- 240 (306)
T 3vis_A 203 -------------------------------NKSWRDI----------TVPTLIIGAEYDTIASVTLHSKPFYNSIPSP- 240 (306)
T ss_dssp -------------------------------CCCCTTC----------CSCEEEEEETTCSSSCTTTTHHHHHHTCCTT-
T ss_pred -------------------------------ccccccC----------CCCEEEEecCCCcccCcchhHHHHHHHhccC-
Confidence 0122333 579999999999999998 689998888764
Q ss_pred ccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCC
Q 003878 737 CTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 737 ~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
+ ++++.+++++||++..... .+....+.+||.++++..
T Consensus 241 ---------~-~~~~~~~~g~gH~~~~~~~--~~~~~~i~~fl~~~l~~~ 278 (306)
T 3vis_A 241 ---------T-DKAYLELDGASHFAPNITN--KTIGMYSVAWLKRFVDED 278 (306)
T ss_dssp ---------S-CEEEEEETTCCTTGGGSCC--HHHHHHHHHHHHHHHSCC
T ss_pred ---------C-CceEEEECCCCccchhhch--hHHHHHHHHHHHHHccCc
Confidence 4 8899999999999755433 356678999999998754
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=173.02 Aligned_cols=201 Identities=11% Similarity=0.057 Sum_probs=147.9
Q ss_pred EEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCc-cCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHh
Q 003878 510 QVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNI-SVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 588 (789)
Q Consensus 510 ~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~-~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~ 588 (789)
...++..+| ..+++.++.|++ ++.|+||++|||... .....|.. +...+.++||.|+++|+||.++..
T Consensus 40 ~~~i~~~~~-~~~~~~~~~p~~----~~~p~vv~~HGgg~~~~~~~~~~~-~~~~l~~~G~~v~~~d~~~~~~~~----- 108 (262)
T 2pbl_A 40 RLNLSYGEG-DRHKFDLFLPEG----TPVGLFVFVHGGYWMAFDKSSWSH-LAVGALSKGWAVAMPSYELCPEVR----- 108 (262)
T ss_dssp EEEEESSSS-TTCEEEEECCSS----SCSEEEEEECCSTTTSCCGGGCGG-GGHHHHHTTEEEEEECCCCTTTSC-----
T ss_pred ccccccCCC-CCceEEEEccCC----CCCCEEEEEcCcccccCChHHHHH-HHHHHHhCCCEEEEeCCCCCCCCC-----
Confidence 334454566 678888888875 567999999997522 22233443 334555589999999999976532
Q ss_pred cccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC------CCceeEEEecCCccccccccccc
Q 003878 589 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR------PDLFGCALAHVGVMDMLRYHKFT 662 (789)
Q Consensus 589 ~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~------pd~f~a~v~~~p~~d~~~~~~~~ 662 (789)
.....+|+.+++++|..+.. ++++++|+|+||.+++.++.++ |++++++|+.+|+.++.......
T Consensus 109 ------~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~v~~~vl~~~~~~~~~~~~~~ 179 (262)
T 2pbl_A 109 ------ISEITQQISQAVTAAAKEID---GPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRTS 179 (262)
T ss_dssp ------HHHHHHHHHHHHHHHHHHSC---SCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGST
T ss_pred ------hHHHHHHHHHHHHHHHHhcc---CCEEEEEECHHHHHHHHHhccccccccccccceEEEEecCccCchHHHhhh
Confidence 12336899999999988743 7999999999999999999887 89999999999998865433211
Q ss_pred CCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCC
Q 003878 663 IGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLEN 742 (789)
Q Consensus 663 ~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~ 742 (789)
+...++. .+ ..+...+|...+... .+|+|+++|++|..|++.++.++++++. .
T Consensus 180 ----~~~~~~~--~~---~~~~~~~~~~~~~~~----------~~P~lii~G~~D~~~~~~~~~~~~~~~~-~------- 232 (262)
T 2pbl_A 180 ----MNEKFKM--DA---DAAIAESPVEMQNRY----------DAKVTVWVGGAERPAFLDQAIWLVEAWD-A------- 232 (262)
T ss_dssp ----THHHHCC--CH---HHHHHTCGGGCCCCC----------SCEEEEEEETTSCHHHHHHHHHHHHHHT-C-------
T ss_pred ----hhhhhCC--CH---HHHHhcCcccccCCC----------CCCEEEEEeCCCCcccHHHHHHHHHHhC-C-------
Confidence 1111221 12 224667888877665 7899999999999999999999988775 3
Q ss_pred CCCCCcEEEEEeCCCCcCCCCc
Q 003878 743 SPQTNPIIGRIERKAGHGVGLP 764 (789)
Q Consensus 743 ~~~~~~~~l~~~~~~gH~~~~~ 764 (789)
++.+++++||.....
T Consensus 233 -------~~~~~~~~~H~~~~~ 247 (262)
T 2pbl_A 233 -------DHVIAFEKHHFNVIE 247 (262)
T ss_dssp -------EEEEETTCCTTTTTG
T ss_pred -------eEEEeCCCCcchHHh
Confidence 789999999986543
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-17 Score=176.13 Aligned_cols=242 Identities=12% Similarity=0.067 Sum_probs=164.2
Q ss_pred CCcEEEE-EEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCC
Q 003878 505 EFHVHQV-FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG 583 (789)
Q Consensus 505 ~~~~~~~-~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g 583 (789)
.+..+++ .+...|| .+|.+.++.|.+ ++.|+||++||..+... .|.. ....|.++||.|+++|+||.|...
T Consensus 31 ~~~~~~~~~~~~~dg-~~l~~~~~~p~~----~~~p~vv~~HG~~~~~~--~~~~-~~~~l~~~g~~vi~~D~~G~G~S~ 102 (342)
T 3hju_A 31 SIPYQDLPHLVNADG-QYLFCRYWKPTG----TPKALIFVSHGAGEHSG--RYEE-LARMLMGLDLLVFAHDHVGHGQSE 102 (342)
T ss_dssp SCBTTSSCEEECTTS-CEEEEEEECCSS----CCSEEEEEECCTTCCGG--GGHH-HHHHHHTTTEEEEEECCTTSTTSC
T ss_pred CcccccCceEEccCC-eEEEEEEeCCCC----CCCcEEEEECCCCcccc--hHHH-HHHHHHhCCCeEEEEcCCCCcCCC
Confidence 3444445 6788899 999999998864 46799999999876543 3443 455666589999999999987654
Q ss_pred hhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccc--
Q 003878 584 EEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKF-- 661 (789)
Q Consensus 584 ~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~-- 661 (789)
.. ...........+|+.+++++|..+ .+.++++++|+|+||.+++.++.++|++++++|+..|+.+.......
T Consensus 103 ~~---~~~~~~~~~~~~d~~~~l~~l~~~--~~~~~v~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 177 (342)
T 3hju_A 103 GE---RMVVSDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTF 177 (342)
T ss_dssp SS---TTCCSCTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCSCCTTTTSHH
T ss_pred Cc---CCCcCcHHHHHHHHHHHHHHHHHh--CCCCcEEEEEeChHHHHHHHHHHhCccccceEEEECcccccchhhhhHH
Confidence 21 101112223468999999999887 45679999999999999999999999999999999998765322100
Q ss_pred ---------------cCCccchhhcCCCCcHHHHHHHHhcCcc----------------------cCCCCCCCCCCCCCC
Q 003878 662 ---------------TIGHAWVSDFGCSEEEEEFYWLIKYSPL----------------------HNVRRPWEQNPDKPF 704 (789)
Q Consensus 662 ---------------~~~~~~~~e~g~p~~~~~~~~l~~~sP~----------------------~~v~~~~~~~~~~~~ 704 (789)
.... ....+. ..+++....+.. .|. ..+.++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--------- 245 (342)
T 3hju_A 178 KVLAAKVLNLVLPNLSLGP-IDSSVL-SRNKTEVDIYNS-DPLICRAGLKVCFGIQLLNAVSRVERALPKL--------- 245 (342)
T ss_dssp HHHHHHHHHHHCTTCBCCC-CCGGGS-CSCHHHHHHHHT-CTTCCCSCCBHHHHHHHHHHHHHHHHHGGGC---------
T ss_pred HHHHHHHHHHhccccccCc-cccccc-ccchHHHHHHhc-CcccccccccHHHHHHHHHHHHHHHHHHHhC---------
Confidence 0000 000000 011111111111 111 223333
Q ss_pred CCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCch-hhHHHHHHHHHHHHHHHh
Q 003878 705 QYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT-QKMIDEAADRYGFMAKML 783 (789)
Q Consensus 705 ~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~-~~~~~~~~~~~~fl~~~l 783 (789)
.+|+|+++|++|..|++..+.++++.+. +..+++.+++++||.+.... ....+....+++||.+++
T Consensus 246 -~~Pvlii~G~~D~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (342)
T 3hju_A 246 -TVPFLLLQGSADRLCDSKGAYLLMELAK------------SQDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRT 312 (342)
T ss_dssp -CSCEEEEEETTCSSSCHHHHHHHHHHCC------------CSSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred -CcCEEEEEeCCCcccChHHHHHHHHHcC------------CCCceEEEECCCCchhhcCChHHHHHHHHHHHHHHhccc
Confidence 6799999999999999998888877764 22468999999999875433 223566778999999887
Q ss_pred C
Q 003878 784 G 784 (789)
Q Consensus 784 ~ 784 (789)
.
T Consensus 313 ~ 313 (342)
T 3hju_A 313 A 313 (342)
T ss_dssp H
T ss_pred C
Confidence 4
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=180.30 Aligned_cols=222 Identities=12% Similarity=0.044 Sum_probs=150.1
Q ss_pred EEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHH
Q 003878 522 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFD 600 (789)
Q Consensus 522 i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~ 600 (789)
++++++.|.+ ++.|+||++|||...... ..+......+..+.||.|+++|+||+++... ...++
T Consensus 84 ~~~~~~~p~~----~~~p~vv~lHGgg~~~~~~~~~~~~~~~la~~~g~~vi~~D~r~~~~~~~-----------~~~~~ 148 (326)
T 3d7r_A 84 MQVFRFNFRH----QIDKKILYIHGGFNALQPSPFHWRLLDKITLSTLYEVVLPIYPKTPEFHI-----------DDTFQ 148 (326)
T ss_dssp EEEEEEESTT----CCSSEEEEECCSTTTSCCCHHHHHHHHHHHHHHCSEEEEECCCCTTTSCH-----------HHHHH
T ss_pred EEEEEEeeCC----CCCeEEEEECCCcccCCCCHHHHHHHHHHHHHhCCEEEEEeCCCCCCCCc-----------hHHHH
Confidence 5667777875 456999999998643222 2233333444444699999999999765321 23578
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc----eeEEEecCCcccccccccccCCccchhhcCCCCc
Q 003878 601 DFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDL----FGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEE 676 (789)
Q Consensus 601 D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~----f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~ 676 (789)
|+.+++++|.++ .++++|+|+|+|+||.+++.++.++|+. ++++|+.+|++++........ ... ........
T Consensus 149 d~~~~~~~l~~~--~~~~~i~l~G~S~GG~lAl~~a~~~~~~~~~~v~~lvl~~p~~~~~~~~~~~~-~~~-~~~~~~~~ 224 (326)
T 3d7r_A 149 AIQRVYDQLVSE--VGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISPILDATLSNKDIS-DAL-IEQDAVLS 224 (326)
T ss_dssp HHHHHHHHHHHH--HCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCCTTCC-HHH-HHHCSSCC
T ss_pred HHHHHHHHHHhc--cCCCcEEEEEECHHHHHHHHHHHHHHhcCCCCCCeEEEECcccccCcCChhHH-hhh-cccCcccC
Confidence 999999999987 6889999999999999999999888776 999999999887643221000 000 00000000
Q ss_pred HHHHH----HHH--------hcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCC
Q 003878 677 EEEFY----WLI--------KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSP 744 (789)
Q Consensus 677 ~~~~~----~l~--------~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~ 744 (789)
..... .+. ..+|+...-. ..||+||++|++|. +..++.++.++|++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~P~lii~G~~D~--~~~~~~~~~~~l~~~--------- 283 (326)
T 3d7r_A 225 QFGVNEIMKKWANGLPLTDKRISPINGTIE----------GLPPVYMFGGGREM--THPDMKLFEQMMLQH--------- 283 (326)
T ss_dssp HHHHHHHHHHHHTTSCTTSTTTSGGGSCCT----------TCCCEEEEEETTST--THHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHhcCCCCCCCCeECcccCCcc----------cCCCEEEEEeCccc--chHHHHHHHHHHHHC---------
Confidence 11111 111 1233332111 35899999999996 456788899999987
Q ss_pred CCCcEEEEEeCCCCcCCCCc-hhhHHHHHHHHHHHHHHHhC
Q 003878 745 QTNPIIGRIERKAGHGVGLP-TQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 745 ~~~~~~l~~~~~~gH~~~~~-~~~~~~~~~~~~~fl~~~l~ 784 (789)
+.++++.+++++||.+... ..+..+....+.+||.++++
T Consensus 284 -~~~~~~~~~~g~~H~~~~~~~~~~~~~~~~i~~fl~~~l~ 323 (326)
T 3d7r_A 284 -HQYIEFYDYPKMVHDFPIYPIRQSHKAIKQIAKSIDEDVT 323 (326)
T ss_dssp -TCCEEEEEETTCCTTGGGSSSHHHHHHHHHHHHHHTSCCC
T ss_pred -CCcEEEEEeCCCcccccccCCHHHHHHHHHHHHHHHHHhh
Confidence 8899999999999987541 12335677889999987764
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.76 E-value=9.5e-18 Score=199.65 Aligned_cols=253 Identities=14% Similarity=0.112 Sum_probs=165.9
Q ss_pred CCCCCCcEEEEEE-----ecCCCceE--EEEEEEecCCCCCCCCccEEEEEcC--CCCcc------------------C-
Q 003878 501 FDRSEFHVHQVFV-----PSKDGSTK--IPMFIVSKKNIKLDGSHPCLLYGYG--GFNIS------------------V- 552 (789)
Q Consensus 501 ~~~~~~~~~~~~~-----~s~dg~~~--i~~~l~~p~~~~~~~~~P~ll~~hG--g~~~~------------------~- 552 (789)
|+......+.+++ +..|| ++ |.+.|+.|++ .++.|+||..|| +.+.. .
T Consensus 161 ~~~~~~~~e~~~ve~~v~~~~DG-~~d~L~a~l~~P~~---~~k~PvIv~~~pYg~~~~~~~~~~~~~~~~~~l~~~~p~ 236 (763)
T 1lns_A 161 FDSSLLEREVLWVESPVDSEQRG-ENDLIKIQIIRPKS---TEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSH 236 (763)
T ss_dssp SCGGGCEEEEEEEECSCCTTCSS-SCCEEEEEEEECCC---SSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSE
T ss_pred cCCccceeeeeEEecCcccCCCC-CeeeEEEEEEecCC---CCcccEEEecCCcCCCCcccccccccccccccccccCcc
Confidence 3433344445554 46899 99 9999999997 368999996544 32110 0
Q ss_pred -------------------------CCCCC----HHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHH
Q 003878 553 -------------------------TPSFS----VSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFI 603 (789)
Q Consensus 553 -------------------------~~~~~----~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~ 603 (789)
...|. ......+.++||+|+.+|+||.|+.+..+ ........+|+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~GYaVv~~D~RG~G~S~G~~-----~~~~~~e~~D~~ 311 (763)
T 1lns_A 237 EIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQ-----TSGDYQQIYSMT 311 (763)
T ss_dssp ECCCCCCCCCCCCCCCCCCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCC-----CTTSHHHHHHHH
T ss_pred ccccccccccccccccccccccccchhccccccccchHHHHHHCCCEEEEECCCcCCCCCCcC-----CCCCHHHHHHHH
Confidence 01111 11234555699999999999988754332 122234579999
Q ss_pred HHHHHHHHc---------------CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccccc------
Q 003878 604 SASEYLISA---------------GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT------ 662 (789)
Q Consensus 604 ~~~~~L~~~---------------~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~------ 662 (789)
++++||..+ .+ +.+||+++|+|+||++++++|.++|+.++|+|+.+|+.|+.......
T Consensus 312 a~IdwL~~~~~~~~d~~~~~~v~q~~-~~grVgl~G~SyGG~ial~~Aa~~p~~lkaiV~~~~~~d~~~~~~~~g~~~~~ 390 (763)
T 1lns_A 312 AVIDWLNGRARAYTSRKKTHEIKASW-ANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSP 390 (763)
T ss_dssp HHHHHHTTSSCEESSTTCCCEECCTT-EEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCC
T ss_pred HHHHHHhhcccccccccccccccccC-CCCcEEEEEECHHHHHHHHHHHhCCcccEEEEEecccccHHHHhhhcchhhhc
Confidence 999999843 23 45799999999999999999999999999999999998754321100
Q ss_pred CC-ccc----hhh--cCCCCcH-------HHH-------------------HHHHhcCcccCCCCCCCCCCCCCCCCCeE
Q 003878 663 IG-HAW----VSD--FGCSEEE-------EEF-------------------YWLIKYSPLHNVRRPWEQNPDKPFQYPST 709 (789)
Q Consensus 663 ~~-~~~----~~e--~g~p~~~-------~~~-------------------~~l~~~sP~~~v~~~~~~~~~~~~~~pp~ 709 (789)
.+ ..+ ... +.....+ +.+ +++...+|..+++++ .+|+
T Consensus 391 ~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~s~~~~l~~I----------~~Pv 460 (763)
T 1lns_A 391 GGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDYNQFWHDRNYLINTDKV----------KADV 460 (763)
T ss_dssp TTCTTCCHHHHHHHHCGGGGSHHHHHHHHHHHHHHHHHHHHHHCTTTCCCCHHHHTTBGGGGGGGC----------CSEE
T ss_pred ccCCchhhhHHhHHHHhhhcCcchhhhHHHHHHHHHHHHHhhhhhccCchhHHhhccChhhHhhcC----------CCCE
Confidence 00 000 000 0000000 000 112344666667666 7899
Q ss_pred EEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCC
Q 003878 710 LLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 710 Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
|++||.+|..||+.++.+++++|+. +.+..+.+ .++||....... ..+....+.+||+++|+..
T Consensus 461 Lii~G~~D~~vp~~~a~~l~~al~~-----------~~~~~l~i-~~~gH~~~~~~~-~~~~~~~i~~Ffd~~Lkg~ 524 (763)
T 1lns_A 461 LIVHGLQDWNVTPEQAYNFWKALPE-----------GHAKHAFL-HRGAHIYMNSWQ-SIDFSETINAYFVAKLLDR 524 (763)
T ss_dssp EEEEETTCCSSCTHHHHHHHHHSCT-----------TCCEEEEE-ESCSSCCCTTBS-SCCHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCChHHHHHHHHhhcc-----------CCCeEEEE-eCCcccCccccc-hHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998863 34556655 578998643211 1245678999999999753
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-17 Score=183.49 Aligned_cols=235 Identities=10% Similarity=0.013 Sum_probs=158.7
Q ss_pred CcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChh
Q 003878 506 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 585 (789)
Q Consensus 506 ~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~ 585 (789)
...+.+.++. +| .+|+++++.|++ .++.|+||++||..+.... .+. .....+.++||.|+.+|+||.|+....
T Consensus 166 ~~~~~v~i~~-~g-~~l~~~~~~P~~---~~~~P~vv~~hG~~~~~~~-~~~-~~~~~l~~~G~~V~~~D~~G~G~s~~~ 238 (415)
T 3mve_A 166 YIIKQLEIPF-EK-GKITAHLHLTNT---DKPHPVVIVSAGLDSLQTD-MWR-LFRDHLAKHDIAMLTVDMPSVGYSSKY 238 (415)
T ss_dssp SEEEEEEEEC-SS-SEEEEEEEESCS---SSCEEEEEEECCTTSCGGG-GHH-HHHHTTGGGTCEEEEECCTTSGGGTTS
T ss_pred CCeEEEEEEE-CC-EEEEEEEEecCC---CCCCCEEEEECCCCccHHH-HHH-HHHHHHHhCCCEEEEECCCCCCCCCCC
Confidence 4567888887 78 899999999986 4678999999997544222 222 233555559999999999997754211
Q ss_pred HHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc---cc
Q 003878 586 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK---FT 662 (789)
Q Consensus 586 ~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~---~~ 662 (789)
......-....++++++...+.+|+++|+++|+|+||++++.++..+|++++++|+..|+++...... ..
T Consensus 239 -------~~~~~~~~~~~~v~~~l~~~~~vd~~~i~l~G~S~GG~~a~~~a~~~~~~v~~~v~~~~~~~~~~~~~~~~~~ 311 (415)
T 3mve_A 239 -------PLTEDYSRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQ 311 (415)
T ss_dssp -------CCCSCTTHHHHHHHHHGGGCTTEEEEEEEEEEETHHHHHHHHHHHHTTTTCCEEEEESCCCSHHHHCHHHHTT
T ss_pred -------CCCCCHHHHHHHHHHHHHhCcCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEECCccccccccHHHHHH
Confidence 11111223335678888888878999999999999999999999999999999999999865321100 00
Q ss_pred CCc----cchhhcCCC-Cc-HHHHHHHHhcCcccC----CCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHH
Q 003878 663 IGH----AWVSDFGCS-EE-EEEFYWLIKYSPLHN----VRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATM 732 (789)
Q Consensus 663 ~~~----~~~~e~g~p-~~-~~~~~~l~~~sP~~~----v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L 732 (789)
... .+...+|.. .. .+....+..+++... +.++ .+|+|+++|++|..||+.++.++.+
T Consensus 312 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----------~~PvLii~G~~D~~vp~~~~~~l~~-- 379 (415)
T 3mve_A 312 MPKMYLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKT----------KVPILAMSLEGDPVSPYSDNQMVAF-- 379 (415)
T ss_dssp SCHHHHHHHHHHTTCSSBCHHHHHHHGGGGCTTTTTTTTSSCB----------SSCEEEEEETTCSSSCHHHHHHHHH--
T ss_pred hHHHHHHHHHHHhCCCccCHHHHHHHHhhcCcccccccccCCC----------CCCEEEEEeCCCCCCCHHHHHHHHH--
Confidence 000 011123332 22 222333444544332 2233 6899999999999999998887665
Q ss_pred HHhhccCCCCCCCCCcEEEEEeCC-CCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 733 QYVLCTSLENSPQTNPIIGRIERK-AGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~~~~-~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
. +.+.+++++++ .+|. ...+....+.+||.++|+
T Consensus 380 --~----------~~~~~l~~i~g~~~h~------~~~~~~~~i~~fL~~~L~ 414 (415)
T 3mve_A 380 --F----------STYGKAKKISSKTITQ------GYEQSLDLAIKWLEDELL 414 (415)
T ss_dssp --T----------BTTCEEEEECCCSHHH------HHHHHHHHHHHHHHHHHT
T ss_pred --h----------CCCceEEEecCCCccc------chHHHHHHHHHHHHHHhc
Confidence 3 45568889988 3332 224567789999999875
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-18 Score=181.29 Aligned_cols=206 Identities=11% Similarity=0.026 Sum_probs=139.5
Q ss_pred CCCccEEEEEcCCCCcc---CCCCCCHHHHHHH----HcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHH
Q 003878 535 DGSHPCLLYGYGGFNIS---VTPSFSVSRTILM----RHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE 607 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~---~~~~~~~~~~~~l----~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~ 607 (789)
.++.|+||++|||.... ....|.. ....| .++||.|+++|+|++++. .....++|+.++++
T Consensus 38 ~~~~p~vv~lHGgg~~~g~~~~~~~~~-~~~~L~~~a~~~g~~vi~~d~r~~~~~-----------~~~~~~~d~~~~~~ 105 (273)
T 1vkh_A 38 QNTREAVIYIHGGAWNDPENTPNDFNQ-LANTIKSMDTESTVCQYSIEYRLSPEI-----------TNPRNLYDAVSNIT 105 (273)
T ss_dssp TTCCEEEEEECCSTTTCTTCCGGGGHH-HHHHHHHHCTTCCEEEEEECCCCTTTS-----------CTTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCcccCCcCChHHHHH-HHHHHhhhhccCCcEEEEeecccCCCC-----------CCCcHHHHHHHHHH
Confidence 45789999999976432 1223333 34455 458999999999987642 12345789999999
Q ss_pred HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-----------------CCceeEEEecCCcccccccccccCC-ccchh
Q 003878 608 YLISAGYTQSRKLCIEGGSNGGLLVGACINQR-----------------PDLFGCALAHVGVMDMLRYHKFTIG-HAWVS 669 (789)
Q Consensus 608 ~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-----------------pd~f~a~v~~~p~~d~~~~~~~~~~-~~~~~ 669 (789)
+++++ .++++++++|+|+||.+++.++.++ |+.++++|+.+|+.++......... ..+..
T Consensus 106 ~l~~~--~~~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~ 183 (273)
T 1vkh_A 106 RLVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTR 183 (273)
T ss_dssp HHHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHHHHH
T ss_pred HHHHh--CCcCcEEEEEeCHHHHHHHHHHHHhccCCccccccccccccCCcccceeeeecccccHHHhhhhcccHHHHHH
Confidence 99987 5778999999999999999999885 7899999999998876433211000 00001
Q ss_pred -hcCC-CCcHHHHHHHHhcCccc--CCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCC
Q 003878 670 -DFGC-SEEEEEFYWLIKYSPLH--NVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQ 745 (789)
Q Consensus 670 -e~g~-p~~~~~~~~l~~~sP~~--~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~ 745 (789)
.++. +.... +.....+|+. ..... .+|+|+++|++|..||+.++.+++++|+..
T Consensus 184 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~----------~~P~lii~G~~D~~vp~~~~~~~~~~l~~~---------- 241 (273)
T 1vkh_A 184 LAFPDGIQMYE--EEPSRVMPYVKKALSRF----------SIDMHLVHSYSDELLTLRQTNCLISCLQDY---------- 241 (273)
T ss_dssp HHCTTCGGGCC--CCHHHHHHHHHHHHHHH----------TCEEEEEEETTCSSCCTHHHHHHHHHHHHT----------
T ss_pred HHhcccccchh--hcccccChhhhhccccc----------CCCEEEEecCCcCCCChHHHHHHHHHHHhc----------
Confidence 1111 10000 0001111211 01112 579999999999999999999999999987
Q ss_pred CCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHH
Q 003878 746 TNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFM 779 (789)
Q Consensus 746 ~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl 779 (789)
+.++++.+++++||...... .+..+.+.+||
T Consensus 242 ~~~~~~~~~~~~gH~~~~~~---~~~~~~i~~fl 272 (273)
T 1vkh_A 242 QLSFKLYLDDLGLHNDVYKN---GKVAKYIFDNI 272 (273)
T ss_dssp TCCEEEEEECCCSGGGGGGC---HHHHHHHHHTC
T ss_pred CCceEEEEeCCCcccccccC---hHHHHHHHHHc
Confidence 88999999999999864333 24445555554
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=174.17 Aligned_cols=241 Identities=13% Similarity=0.070 Sum_probs=159.8
Q ss_pred CcEEEEEEecC-CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCH--HHHHHHHcCCeEEEEEeecCCCCC
Q 003878 506 FHVHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV--SRTILMRHLGAVFCIANIRGGGEY 582 (789)
Q Consensus 506 ~~~~~~~~~s~-dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~--~~~~~l~~~G~~v~~~~~RG~g~~ 582 (789)
...+.+.+.|. +| .+++++ +.|++ .|+|+++||+.+......|.. ....++++.|++|+++|.++++.|
T Consensus 9 ~~~~~~~~~S~~~~-~~~~~~-~~P~~------~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~pd~~~~~~~ 80 (280)
T 1r88_A 9 APYENLMVPSPSMG-RDIPVA-FLAGG------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYSMY 80 (280)
T ss_dssp CCCEEEEEEETTTT-EEEEEE-EECCS------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCTTSTT
T ss_pred CCEEEEEEECcccC-CcceEE-EeCCC------CCEEEEECCCCCCCChhhhhhcccHHHHHhcCCeEEEEECCCCCCcc
Confidence 34567777775 78 999999 77764 289999999853222222221 134667778999999999776544
Q ss_pred ChhHHhcccccCCcchHHHHH--HHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc
Q 003878 583 GEEWHKGGALAKKQNCFDDFI--SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK 660 (789)
Q Consensus 583 g~~~~~~~~~~~~~~~~~D~~--~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~ 660 (789)
. .|.... ...+.+++ +.+.++.++--+++++++|+|+|+||++++.++.++|++|+++|+.+|.+++.....
T Consensus 81 ~-~~~~~~-----~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~ 154 (280)
T 1r88_A 81 T-NWEQDG-----SKQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTT 154 (280)
T ss_dssp S-BCSSCT-----TCBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSHHH
T ss_pred C-CCCCCC-----CCcHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCcCCccc
Confidence 2 121111 01333322 234444443336888999999999999999999999999999999999887543210
Q ss_pred ---------ccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEe----cCCCCC-------C
Q 003878 661 ---------FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLT----ADHDDR-------V 720 (789)
Q Consensus 661 ---------~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~----g~~D~~-------V 720 (789)
......+...||.+... .+.+.+|+.++++.- ...+|+++.| |+.|.+ |
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~p~~~~~~~~-------~~~~pv~i~~~~~~G~~D~~~~~~~~~~ 223 (280)
T 1r88_A 155 NGAIAAGMQQFGGVDTNGMWGAPQLG----RWKWHDPWVHASLLA-------QNNTRVWVWSPTNPGASDPAAMIGQAAE 223 (280)
T ss_dssp HHHHHHHHHHHHCCCTHHHHCCGGGS----TTGGGCTTTTHHHHH-------HTTCEEEEECCSSCCCSSGGGGTTCHHH
T ss_pred hhhHHHHhhhccccchhhhcCCCchh----hhHhcCHHHHHHhhh-------ccCCeEEEEeccCCCCCCcccccchhHH
Confidence 00000112335554321 134567776554310 0147999999 999985 6
Q ss_pred CcHHHHHHHHHHHHhhccCCCCCCCC-CcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 721 VPLHSLKLLATMQYVLCTSLENSPQT-NPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 721 ~~~~~~~~~~~L~~~~~~~~~~~~~~-~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
++.++.+++++|++. | .++++.++++++|.+.. ....+...+.|+.+.|..
T Consensus 224 ~~~~~~~~~~~L~~~----------g~~~~~~~~~~~g~H~~~~----w~~~l~~~l~~~~~~~~~ 275 (280)
T 1r88_A 224 AMGNSRMFYNQYRSV----------GGHNGHFDFPASGDNGWGS----WAPQLGAMSGDIVGAIRH 275 (280)
T ss_dssp HHHHHHHHHHHHHHT----------TCCSEEEECCSSCCSSHHH----HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHC----------CCcceEEEecCCCCcChhH----HHHHHHHHHHHHHHHHhh
Confidence 889999999999987 8 99999999899997532 234566778888877643
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=164.86 Aligned_cols=185 Identities=14% Similarity=-0.022 Sum_probs=133.6
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHh-----c-ccccC----CcchHHHHHH
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK-----G-GALAK----KQNCFDDFIS 604 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~-----~-~~~~~----~~~~~~D~~~ 604 (789)
+++.| ||++||..+... .|.. ....+. .|+.|+.++.++....+..|+. . ..... -....+++.+
T Consensus 14 ~~~~p-vv~lHG~g~~~~--~~~~-~~~~l~-~~~~v~~~~~~~~~~g~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~ 88 (209)
T 3og9_A 14 KDLAP-LLLLHSTGGDEH--QLVE-IAEMIA-PSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLESLDEETDWLTD 88 (209)
T ss_dssp TTSCC-EEEECCTTCCTT--TTHH-HHHHHS-TTCCEEEECCSBCGGGCCBSSCBCSCTTCSGGGBCHHHHHHHHHHHHH
T ss_pred CCCCC-EEEEeCCCCCHH--HHHH-HHHhcC-CCceEEEecCCcCCCCcccceecccccccccCCCCHHHHHHHHHHHHH
Confidence 35678 999999765432 3433 455666 8999999996643333444544 1 00011 1123456666
Q ss_pred HHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHH
Q 003878 605 ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLI 684 (789)
Q Consensus 605 ~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~ 684 (789)
.++.+.++..+|+++++++|+|+||.+++.++.++|++++++|+.+|......
T Consensus 89 ~~~~~~~~~~~d~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~--------------------------- 141 (209)
T 3og9_A 89 EVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDF--------------------------- 141 (209)
T ss_dssp HHHHHHHHHTCCGGGCEEEEETHHHHHHHHHHHTTSCCCSEEEEESCCCCCCC---------------------------
T ss_pred HHHHHHHhcCCCcceEEEEEECHHHHHHHHHHHhCCcccceEEEECCCCCCcc---------------------------
Confidence 77777666567899999999999999999999999999999999888653100
Q ss_pred hcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCc
Q 003878 685 KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP 764 (789)
Q Consensus 685 ~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~ 764 (789)
...... ..+|+|++||++|..||++++.+++++|++. +.++++.+++ +||.+..
T Consensus 142 ----~~~~~~----------~~~p~li~~G~~D~~v~~~~~~~~~~~l~~~----------~~~~~~~~~~-~gH~~~~- 195 (209)
T 3og9_A 142 ----EQTVQL----------DDKHVFLSYAPNDMIVPQKNFGDLKGDLEDS----------GCQLEIYESS-LGHQLTQ- 195 (209)
T ss_dssp ----CCCCCC----------TTCEEEEEECTTCSSSCHHHHHHHHHHHHHT----------TCEEEEEECS-STTSCCH-
T ss_pred ----cccccc----------cCCCEEEEcCCCCCccCHHHHHHHHHHHHHc----------CCceEEEEcC-CCCcCCH-
Confidence 001112 2689999999999999999999999999988 8899999997 7999842
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 003878 765 TQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 765 ~~~~~~~~~~~~~fl~~~ 782 (789)
+....+.+||.+.
T Consensus 196 -----~~~~~~~~~l~~~ 208 (209)
T 3og9_A 196 -----EEVLAAKKWLTET 208 (209)
T ss_dssp -----HHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhh
Confidence 4456788888764
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.74 E-value=4.2e-15 Score=165.57 Aligned_cols=264 Identities=15% Similarity=0.087 Sum_probs=179.5
Q ss_pred CCEEEEEEEcCCCC-eeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCC
Q 003878 90 GNKYFYFHNTGLQP-QSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ 168 (789)
Q Consensus 90 g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg 168 (789)
+.++.|.....+.. ...|++.+..++..+.|.... ..+..++|||||++|||+...+| ..+|++||+++|
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~-------~~v~~~~~Spdg~~la~~s~~~~--~~~i~~~d~~tg 213 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP-------QPLMSPAWSPDGSKLAYVTFESG--RSALVIQTLANG 213 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEES-------SCEEEEEECTTSSEEEEEECTTS--SCEEEEEETTTC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCC-------CcceeeEEcCCCCEEEEEEecCC--CcEEEEEECCCC
Confidence 66777777654321 245777665444445555432 23678999999999999886544 368999999998
Q ss_pred ceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcE
Q 003878 169 IVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKG 248 (789)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~ 248 (789)
+... +....+ ....++|||||+.
T Consensus 214 ~~~~--l~~~~~-------------------------------------------------------~~~~~~~spdg~~ 236 (415)
T 2hqs_A 214 AVRQ--VASFPR-------------------------------------------------------HNGAPAFSPDGSK 236 (415)
T ss_dssp CEEE--EECCSS-------------------------------------------------------CEEEEEECTTSSE
T ss_pred cEEE--eecCCC-------------------------------------------------------cccCEEEcCCCCE
Confidence 6542 221100 1478999999999
Q ss_pred EEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEE
Q 003878 249 FFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKV 328 (789)
Q Consensus 249 i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i 328 (789)
|+|+.... ...+|+++++.++.. ..+. .+......+.|||||++|++.+.+.. ...|
T Consensus 237 la~~~~~~----------------g~~~i~~~d~~~~~~--~~l~---~~~~~~~~~~~spdg~~l~~~s~~~g--~~~i 293 (415)
T 2hqs_A 237 LAFALSKT----------------GSLNLYVMDLASGQI--RQVT---DGRSNNTEPTWFPDSQNLAFTSDQAG--RPQV 293 (415)
T ss_dssp EEEEECTT----------------SSCEEEEEETTTCCE--EECC---CCSSCEEEEEECTTSSEEEEEECTTS--SCEE
T ss_pred EEEEEecC----------------CCceEEEEECCCCCE--EeCc---CCCCcccceEECCCCCEEEEEECCCC--CcEE
Confidence 99885421 234699999977532 2222 22334568899999999999875432 4679
Q ss_pred EEEECCCCCCCcccccccCCCCccEeeecc-ccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCc
Q 003878 329 YYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERD 407 (789)
Q Consensus 329 ~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~ 407 (789)
|++|+.++. ...+... .......|+|||+.|++.+..+ ....|+++|+++++ .+.+..+.
T Consensus 294 ~~~d~~~~~--------------~~~l~~~~~~~~~~~~spdG~~l~~~~~~~-g~~~i~~~d~~~~~-~~~l~~~~--- 354 (415)
T 2hqs_A 294 YKVNINGGA--------------PQRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGG-VQVLSSTF--- 354 (415)
T ss_dssp EEEETTSSC--------------CEECCCSSSEEEEEEECTTSSEEEEEEECS-SCEEEEEEETTTCC-EEECCCSS---
T ss_pred EEEECCCCC--------------EEEEecCCCcccCeEECCCCCEEEEEECcC-CceEEEEEECCCCC-EEEecCCC---
Confidence 999998752 1222221 1112356999999999887654 35799999999876 45544332
Q ss_pred eeeeEEEecCC-EEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCC
Q 003878 408 VLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARRED 462 (789)
Q Consensus 408 ~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~ 462 (789)
.+..++|++++ .|++....++...|++||++ |+..+.|+.+.+.+..++|+|..
T Consensus 355 ~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 355 LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 56788899864 46666666777899999998 55457787777888888888753
|
| >4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=175.13 Aligned_cols=204 Identities=15% Similarity=0.138 Sum_probs=141.6
Q ss_pred eEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHc--CCeEEEEEeec---CCCCCChhHHhcccccC
Q 003878 520 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRH--LGAVFCIANIR---GGGEYGEEWHKGGALAK 594 (789)
Q Consensus 520 ~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~--~G~~v~~~~~R---G~g~~g~~~~~~~~~~~ 594 (789)
.+...+...|.. ++++.|+||++||..+.... |.. +...+.. .++.+++++-. ...+.|..|+.......
T Consensus 50 ~~~l~y~~~p~~--~~~~~plVI~LHG~G~~~~~--~~~-~~~~l~~~~~~~~~v~P~Ap~~~~~~~~G~~Wfd~~~~~~ 124 (285)
T 4fhz_A 50 TRKLTFGRRGAA--PGEATSLVVFLHGYGADGAD--LLG-LAEPLAPHLPGTAFVAPDAPEPCRANGFGFQWFPIPWLDG 124 (285)
T ss_dssp CCCCCEEEEESC--TTCCSEEEEEECCTTBCHHH--HHT-THHHHGGGSTTEEEEEECCSEECTTSSSCEESSCCHHHHC
T ss_pred cccceeecCCCC--CCCCCcEEEEEcCCCCCHHH--HHH-HHHHHHHhCCCeEEEecCCCcccccCCCcccccccccccC
Confidence 444344445543 56788999999995432211 111 1223322 38888888732 22345667753211110
Q ss_pred --C-------cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCc
Q 003878 595 --K-------QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGH 665 (789)
Q Consensus 595 --~-------~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~ 665 (789)
. .....++.+.++.++++.-+|++||+++|+|+||.+++.++.++|+.|+++|+.++.+..
T Consensus 125 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~id~~ri~l~GfS~Gg~~a~~~a~~~p~~~a~vv~~sG~l~~---------- 194 (285)
T 4fhz_A 125 SSETAAAEGMAAAARDLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSGRLLA---------- 194 (285)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSSSCCSEEEEESCCCSC----------
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEeCHHHHHHHHHHHhCcccCceEEEeecCccC----------
Confidence 1 112356666777777776689999999999999999999999999999999987764310
Q ss_pred cchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCC
Q 003878 666 AWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQ 745 (789)
Q Consensus 666 ~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~ 745 (789)
++.. .. . .. ..+|+|++||++|++||++++.+++++|+++
T Consensus 195 -----------~~~~---~~-----~-~~----------~~~Pvl~~hG~~D~~Vp~~~~~~~~~~L~~~---------- 234 (285)
T 4fhz_A 195 -----------PERL---AE-----E-AR----------SKPPVLLVHGDADPVVPFADMSLAGEALAEA---------- 234 (285)
T ss_dssp -----------HHHH---HH-----H-CC----------CCCCEEEEEETTCSSSCTHHHHHHHHHHHHT----------
T ss_pred -----------chhh---hh-----h-hh----------hcCcccceeeCCCCCcCHHHHHHHHHHHHHC----------
Confidence 1111 00 0 11 2579999999999999999999999999998
Q ss_pred CCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 746 TNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 746 ~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
|.++++++|++.||++. .+++.++.+||.++|.
T Consensus 235 g~~~~~~~y~g~gH~i~------~~~l~~~~~fL~~~Lp 267 (285)
T 4fhz_A 235 GFTTYGHVMKGTGHGIA------PDGLSVALAFLKERLP 267 (285)
T ss_dssp TCCEEEEEETTCCSSCC------HHHHHHHHHHHHHHCC
T ss_pred CCCEEEEEECCCCCCCC------HHHHHHHHHHHHHHCc
Confidence 99999999999999874 2456788999999984
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-16 Score=165.07 Aligned_cols=235 Identities=14% Similarity=0.135 Sum_probs=151.2
Q ss_pred EEEEEE-ecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhH
Q 003878 508 VHQVFV-PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 586 (789)
Q Consensus 508 ~~~~~~-~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~ 586 (789)
.+.+.+ .+.|| .+|.+....+++ .+.|+||++||+.+......+. ....++.++||.|+.+|+||.|......
T Consensus 11 ~~~~~~~~~~~g-~~l~~~~~~~~~----~~~~~vv~~HG~~~~~~~~~~~-~~~~~l~~~g~~v~~~d~~G~G~s~~~~ 84 (270)
T 3llc_A 11 THAITVGQGSDA-RSIAALVRAPAQ----DERPTCIWLGGYRSDMTGTKAL-EMDDLAASLGVGAIRFDYSGHGASGGAF 84 (270)
T ss_dssp EEEEEESSGGGC-EEEEEEEECCSS----TTSCEEEEECCTTCCTTSHHHH-HHHHHHHHHTCEEEEECCTTSTTCCSCG
T ss_pred cceEEEeeccCc-ceEEEEeccCCC----CCCCeEEEECCCccccccchHH-HHHHHHHhCCCcEEEeccccCCCCCCcc
Confidence 344555 56799 899887665442 2469999999976553332222 2456665689999999999988654322
Q ss_pred HhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh---CC---CceeEEEecCCccccccccc
Q 003878 587 HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ---RP---DLFGCALAHVGVMDMLRYHK 660 (789)
Q Consensus 587 ~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~---~p---d~f~a~v~~~p~~d~~~~~~ 660 (789)
....+++..+.+..+++. ...++++++|+|+||.+++.++.+ +| ++++++|+..|..++.....
T Consensus 85 --------~~~~~~~~~~d~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~~~~p~~~~~v~~~il~~~~~~~~~~~~ 154 (270)
T 3llc_A 85 --------RDGTISRWLEEALAVLDH--FKPEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFTSDLI 154 (270)
T ss_dssp --------GGCCHHHHHHHHHHHHHH--HCCSEEEEEEETHHHHHHHHHHHHHHTCSCCSCEEEEEEEESCCTTHHHHTT
T ss_pred --------ccccHHHHHHHHHHHHHH--hccCCeEEEEeChHHHHHHHHHHHHHhccccccccceeEEecCcccchhhhh
Confidence 122344444433333332 125799999999999999999999 99 99999999999877643211
Q ss_pred cc-CCcc----c--------hhhcC-CC--CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHH
Q 003878 661 FT-IGHA----W--------VSDFG-CS--EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH 724 (789)
Q Consensus 661 ~~-~~~~----~--------~~e~g-~p--~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~ 724 (789)
.. .... + ...+. .+ .................+..+ ..|+|+++|.+|..|++.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~P~l~i~g~~D~~v~~~~ 224 (270)
T 3llc_A 155 EPLLGDRERAELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDT----------GCPVHILQGMADPDVPYQH 224 (270)
T ss_dssp GGGCCHHHHHHHHHHSEEEECCTTCSSCEEEEHHHHHHHHHTCCTTSCCCC----------CSCEEEEEETTCSSSCHHH
T ss_pred hhhhhhhhhhhhhccCcccChhhcccchhHHHHHHHhhhhhhhhhhhhhcC----------CCCEEEEecCCCCCCCHHH
Confidence 00 0000 0 01111 11 122334444454445555554 6899999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 725 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 725 ~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
+.++.+.+. +..+++.+++++||.+..... ..+....+.+||.+
T Consensus 225 ~~~~~~~~~------------~~~~~~~~~~~~gH~~~~~~~-~~~~~~~i~~fl~~ 268 (270)
T 3llc_A 225 ALKLVEHLP------------ADDVVLTLVRDGDHRLSRPQD-IDRMRNAIRAMIEP 268 (270)
T ss_dssp HHHHHHTSC------------SSSEEEEEETTCCSSCCSHHH-HHHHHHHHHHHHC-
T ss_pred HHHHHHhcC------------CCCeeEEEeCCCccccccccc-HHHHHHHHHHHhcC
Confidence 888877654 335789999999997654333 23445566666643
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-16 Score=168.66 Aligned_cols=226 Identities=11% Similarity=0.036 Sum_probs=148.8
Q ss_pred EEEEEe---cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChh
Q 003878 509 HQVFVP---SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 585 (789)
Q Consensus 509 ~~~~~~---s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~ 585 (789)
..+.+. +.+| .++.++++.|++. ..+.|+||++||+.+... .|...+...+.++||+|+++|+|+.+..+..
T Consensus 25 ~~~~~~~~~~~~~-~~l~~~~~~P~~~--~~~~p~vv~lHG~~~~~~--~~~~~~~~~l~~~g~~v~~~d~~~~~~p~~~ 99 (304)
T 3d0k_A 25 NAIPYLDDDRNAD-RPFTLNTYRPYGY--TPDRPVVVVQHGVLRNGA--DYRDFWIPAADRHKLLIVAPTFSDEIWPGVE 99 (304)
T ss_dssp EEEEECC---CTT-CCEEEEEEECTTC--CTTSCEEEEECCTTCCHH--HHHHHTHHHHHHHTCEEEEEECCTTTSCHHH
T ss_pred ceEEecccCCCCC-ceEEEEEEeCCCC--CCCCcEEEEeCCCCCCHH--HHHHHHHHHHHHCCcEEEEeCCccccCCCcc
Confidence 345666 6788 8999999999864 246799999999876542 2212234566668999999999976322222
Q ss_pred HHhccc--------ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC-ceeEEEecC-Ccccc
Q 003878 586 WHKGGA--------LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD-LFGCALAHV-GVMDM 655 (789)
Q Consensus 586 ~~~~~~--------~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd-~f~a~v~~~-p~~d~ 655 (789)
|+..+. .......++|+.+++++|.++..+|+++|+++|+|+||.+++.++.++|+ .++++|+.. |+.++
T Consensus 100 ~~~~g~~~g~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~vl~~~~~~~~ 179 (304)
T 3d0k_A 100 SYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAANPGWYTL 179 (304)
T ss_dssp HTTTTTCBCTTSCBCCGGGSTTHHHHHHHHHHHHTTSCCCSSEEEEEETHHHHHHHHHHHHSCSTTCSEEEEESCSSCCC
T ss_pred ccccCccccccCCCCcccchHHHHHHHHHHHHHhccCCCCCcEEEEEeChHHHHHHHHHHHCCCCceEEEEEecCccccc
Confidence 222111 01123456889999999999877899999999999999999999999995 778777544 76654
Q ss_pred cccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCC--------------
Q 003878 656 LRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVV-------------- 721 (789)
Q Consensus 656 ~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~-------------- 721 (789)
..... .| .+|....+ .+|....... .+|+|++||++|..+.
T Consensus 180 ~~~~~-----~~--~~~~~~~~--------~~~~~~~~~~----------~~p~li~~G~~D~~~~~p~~~~~~~~~~~~ 234 (304)
T 3d0k_A 180 PTFEH-----RF--PEGLDGVG--------LTEDHLARLL----------AYPMTILAGDQDIATDDPNLPSEPAALRQG 234 (304)
T ss_dssp SSTTS-----BT--TTSSBTTT--------CCHHHHHHHH----------HSCCEEEEETTCCCC--CCSCCSHHHHTTC
T ss_pred CCccc-----cC--ccccCCCC--------CCHHHHHhhh----------cCCEEEEEeCCCCCccccccccChhhhccC
Confidence 33210 11 11211000 0111111111 4799999999999752
Q ss_pred ---cHHHHHHHHHHH----HhhccCCCCCCCCCc--EEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 722 ---PLHSLKLLATMQ----YVLCTSLENSPQTNP--IIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 722 ---~~~~~~~~~~L~----~~~~~~~~~~~~~~~--~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
...+.++++.++ +. |.+ +++++++++||.+. .....+..||.+
T Consensus 235 ~~~~~~~~~~~~~l~~~a~~~----------g~~~~~~~~~~pg~gH~~~-------~~~~~~~~~~~~ 286 (304)
T 3d0k_A 235 PHRYARARHYYEAGQRAAAQR----------GLPFGWQLQVVPGIGHDGQ-------AMSQVCASLWFD 286 (304)
T ss_dssp SSHHHHHHHHHHHHHHHHHHH----------TCCCCCEEEEETTCCSCHH-------HHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHhc----------CCCcceEEEEeCCCCCchH-------HHHHHHHHHHhh
Confidence 345677777776 44 666 89999999999872 233455666654
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=175.47 Aligned_cols=232 Identities=13% Similarity=0.068 Sum_probs=151.9
Q ss_pred cEEEEEEecC-CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCC---eEEEEEeecCCCCC
Q 003878 507 HVHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLG---AVFCIANIRGGGEY 582 (789)
Q Consensus 507 ~~~~~~~~s~-dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G---~~v~~~~~RG~g~~ 582 (789)
..+.+.+.|. +| .++.++++.|++..+++++|+|+++||+........+......+.++.| ++|+.+++|+++.+
T Consensus 17 ~~~~~~~~s~~~g-~~~~~~v~~P~~~~~~~~~Pvl~~lhG~~~~~~~~~~~~~~~~~~~~~g~~~~ivV~i~~~~~~~~ 95 (275)
T 2qm0_A 17 NTEQWKMYSKLEG-KEYQIHISKPKQPAPDSGYPVIYVLDGNAFFQTFHEAVKIQSVRAEKTGVSPAIIVGVGYPIEGAF 95 (275)
T ss_dssp TEEEEEEECTTTC-CEEEEEEECCSSCCCTTCEEEEEEESHHHHHHHHHHHHHHHGGGHHHHCCCCCEEEEEECSCSSSC
T ss_pred CceEEEEEecCCC-CEEEEEEECCCCCCCCCCccEEEEecChHHHHHHHHHHHHHhhcchhcCCCCeEEEEECCCCCCcC
Confidence 4677888887 78 9999999999987666789999999998531110000000111223467 99999999987655
Q ss_pred Chh-H-Hhcccc----------------c-CCcchHHHHH--HHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC
Q 003878 583 GEE-W-HKGGAL----------------A-KKQNCFDDFI--SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD 641 (789)
Q Consensus 583 g~~-~-~~~~~~----------------~-~~~~~~~D~~--~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd 641 (789)
+.. + .+.+.. . .+...+.|++ +.+.++.++.-+|+++++|+|+|+||++++.++.++|+
T Consensus 96 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~G~S~GG~~a~~~~~~~p~ 175 (275)
T 2qm0_A 96 SGEERCYDFTPSVISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHXLGGLFALHILFTNLN 175 (275)
T ss_dssp CHHHHHHHHCSSCCCC---------CCCCCCCHHHHHHHHHHTHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCGG
T ss_pred cccccccccCCCCccccCCccccCCcCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCEEEEecchhHHHHHHHHhCch
Confidence 421 1 111100 0 0111455544 34455555545789999999999999999999999999
Q ss_pred ceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCC
Q 003878 642 LFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVV 721 (789)
Q Consensus 642 ~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~ 721 (789)
+|+++++.+|.+++..... .. ..+.+ +...+ ... ..+|++++||+.|..++
T Consensus 176 ~f~~~~~~s~~~~~~~~~~--------~~-----~~~~~--~~~~~----~~~----------~~~~~~l~~G~~D~~~~ 226 (275)
T 2qm0_A 176 AFQNYFISSPSIWWNNKSV--------LE-----KEENL--IIELN----NAK----------FETGVFLTVGSLEREHM 226 (275)
T ss_dssp GCSEEEEESCCTTHHHHGG--------GG-----GTTHH--HHHHH----TCS----------SCEEEEEEEETTSCHHH
T ss_pred hhceeEEeCceeeeChHHH--------HH-----HHHHH--Hhhhc----ccC----------CCceEEEEeCCcccchh
Confidence 9999999999864321100 00 00111 11111 122 25799999999999999
Q ss_pred cHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 722 PLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 722 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
..++.+++++|++. ...|.++++.++++++|+... ...+.+.+.||.
T Consensus 227 ~~~~~~~~~~L~~~-------~~~g~~~~~~~~~g~~H~~~~-----~~~l~~~l~~l~ 273 (275)
T 2qm0_A 227 VVGANELSERLLQV-------NHDKLKFKFYEAEGENHASVV-----PTSLSKGLRFIS 273 (275)
T ss_dssp HHHHHHHHHHHHHC-------CCTTEEEEEEEETTCCTTTHH-----HHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHhc-------ccCCceEEEEECCCCCccccH-----HHHHHHHHHHHh
Confidence 99999999999532 112889999999999997531 233455666663
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-17 Score=186.03 Aligned_cols=241 Identities=12% Similarity=0.087 Sum_probs=162.8
Q ss_pred cEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCC---------------------HHHHHHHH
Q 003878 507 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFS---------------------VSRTILMR 565 (789)
Q Consensus 507 ~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~---------------------~~~~~~l~ 565 (789)
..+.+.++++|| ++|.+.++.|++ .++.|+||+.||. +....+.+. .....+++
T Consensus 40 ~~~~v~i~~~DG-~~L~a~l~~P~~---~~~~P~vl~~~py-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la 114 (560)
T 3iii_A 40 MEKDGTVEMRDG-EKLYINIFRPNK---DGKFPVVMSADTY-GKDNKPKITNMGALWPTLGTIPTSSFTPEESPDPGFWV 114 (560)
T ss_dssp EEEEEEEECTTS-CEEEEEEEECSS---SSCEEEEEEEESS-CTTCCCC--CHHHHSGGGCCCCCCTTCCTTSCCHHHHG
T ss_pred EEEEEEEECCCC-cEEEEEEEecCC---CCCCCEEEEecCC-CCCcccccccccccccccccccccccccccCCCHHHHH
Confidence 456799999999 999999999986 3789999998874 332221110 00134566
Q ss_pred cCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeE
Q 003878 566 HLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGC 645 (789)
Q Consensus 566 ~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a 645 (789)
++||+|+.+|+||.|+.+..+. .......+|+.++++||.++.+.| .||+++|+|+||+++++++.++|+.++|
T Consensus 115 ~~Gy~vv~~D~RG~G~S~G~~~-----~~~~~~~~D~~~~i~~l~~~~~~~-~~igl~G~S~GG~~al~~a~~~p~~l~a 188 (560)
T 3iii_A 115 PNDYVVVKVALRGSDKSKGVLS-----PWSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLNPPHLKA 188 (560)
T ss_dssp GGTCEEEEEECTTSTTCCSCBC-----TTSHHHHHHHHHHHHHHHTSTTEE-EEEEEEEETHHHHHHHHHHTTCCTTEEE
T ss_pred hCCCEEEEEcCCCCCCCCCccc-----cCChhHHHHHHHHHHHHHhCCCCC-CcEEEEccCHHHHHHHHHHhcCCCceEE
Confidence 6999999999999998775543 223467899999999999998887 8999999999999999999999999999
Q ss_pred EEecCCcccccccccccCC-------ccchh----hcC-CCCcHHHH----------HHHHhcCcccCCCCCCCCCCCCC
Q 003878 646 ALAHVGVMDMLRYHKFTIG-------HAWVS----DFG-CSEEEEEF----------YWLIKYSPLHNVRRPWEQNPDKP 703 (789)
Q Consensus 646 ~v~~~p~~d~~~~~~~~~~-------~~~~~----e~g-~p~~~~~~----------~~l~~~sP~~~v~~~~~~~~~~~ 703 (789)
+|+.+|+.|+.+......+ ..|.. .|. .+...+.. ++++..++ ++.++
T Consensus 189 iv~~~~~~d~~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~hp~~d~~W~~~~~--~~~~I-------- 258 (560)
T 3iii_A 189 MIPWEGLNDMYREVAFHGGIPDTGFYRFWTQGIFARWTDNPNIEDLIQAQQEHPLFDDFWKQRQV--PLSQI-------- 258 (560)
T ss_dssp EEEESCCCBHHHHTTEETTEECCSHHHHHHHHHHHHTTTCTTBCCHHHHHHHCCSSCHHHHTTBC--CGGGC--------
T ss_pred EEecCCcccccccceecCCCCchhHHHHHHhhhccccccccchHHHHHHHHHCCCcchHhhccCC--chhhC--------
Confidence 9999999997642111111 11211 011 01000001 12333333 34444
Q ss_pred CCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 704 FQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 704 ~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
..|+|+++|-.|..+....+.+.+++|+.. ...+++.. .+|+. ..-..+..+..++||+++|
T Consensus 259 --~vPvl~v~Gw~D~~~~~~g~l~~y~~l~~~------------~k~l~ih~-~~~~~---~~~~~~~~~~~~~wfD~~L 320 (560)
T 3iii_A 259 --KTPLLTCASWSTQGLHNRGSFEGFKQAASE------------EKWLYVHG-RKEWE---SYYARENLERQKSFFDFYL 320 (560)
T ss_dssp --CSCEEEEEEGGGTTTTHHHHHHHHHHCCCS------------SEEEEEES-SCHHH---HHHSHHHHHHHHHHHHHHT
T ss_pred --CCCEEEeCCcCCCcccchhHHHHHHhcccc------------CcEEEECC-CCCcC---cccChhHHHHHHHHHHHHh
Confidence 789999999999866677777777766532 23455532 22321 0101245577899999999
Q ss_pred CCC
Q 003878 784 GAS 786 (789)
Q Consensus 784 ~~~ 786 (789)
+..
T Consensus 321 kG~ 323 (560)
T 3iii_A 321 KEE 323 (560)
T ss_dssp SCC
T ss_pred CCC
Confidence 753
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.2e-17 Score=175.54 Aligned_cols=253 Identities=13% Similarity=0.074 Sum_probs=161.8
Q ss_pred CCCcEEEEEEecCC--C-ceEEEEEEEecCCCCCCCCccEEEEEcCCCCccC-CCCC----CHHHHHHHH-cCCeEEEEE
Q 003878 504 SEFHVHQVFVPSKD--G-STKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV-TPSF----SVSRTILMR-HLGAVFCIA 574 (789)
Q Consensus 504 ~~~~~~~~~~~s~d--g-~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~-~~~~----~~~~~~~l~-~~G~~v~~~ 574 (789)
......++.|.+.| | ++.+.++++.|++. .++.|+|++.||..+... .+.+ .......+. ++||+|+++
T Consensus 39 ~~~~~~~i~Y~s~d~~G~~~~~~g~l~~P~~~--~~~~PvV~~~HG~~~~~~~~ps~~~~~~~~~~~~lal~~Gy~Vv~~ 116 (377)
T 4ezi_A 39 YDLQLYKINYKTQSPDGNLTIASGLVAMPIHP--VGQVGIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVMP 116 (377)
T ss_dssp CCEEEEEEEEEEECTTSCEEEEEEEEEEESSC--SSCEEEEEEECCCCCSTTCSGGGCCGGGHHHHHHHTTTTCCEEEEE
T ss_pred CCcEEEEEEEEEECCCCCEEEEEEEEEECCCC--CCCCcEEEEeCCCcCCcccCCCcCcccchHHHHHHHHhCCcEEEEe
Confidence 35567788888765 4 25577999999873 478999999999763211 1221 112233344 599999999
Q ss_pred eecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHH-cCCCCCCcEEEEeeChHHHHHHHHHHhCCC-----ceeEEEe
Q 003878 575 NIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLIS-AGYTQSRKLCIEGGSNGGLLVGACINQRPD-----LFGCALA 648 (789)
Q Consensus 575 ~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~-~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd-----~f~a~v~ 648 (789)
|+||.|+.+...+.-.........+.|.+.++..+.+ .+..++++|+++|+|+||.++++++.+.|+ .+.++++
T Consensus 117 D~rG~G~s~~~~~~~~~~~~~~~~~~D~~~a~~~~~~~~g~~~~~~v~l~G~S~GG~~al~~A~~~p~~~~~l~l~g~~~ 196 (377)
T 4ezi_A 117 DYLGLGDNELTLHPYVQAETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPDLPVSAVAP 196 (377)
T ss_dssp CCTTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTSCCCEEEE
T ss_pred CCCCCCCCCCCCcccccchhHHHHHHHHHHHHHHHhhccCCCCCCceEEEEECHHHHHHHHHHHHhhhhCCCCceEEEEe
Confidence 9999887653111000000112234455555544444 365577999999999999999998887543 5889999
Q ss_pred cCCcccccccccccC---C---ccc-----------hhhcC------CCC------------------------------
Q 003878 649 HVGVMDMLRYHKFTI---G---HAW-----------VSDFG------CSE------------------------------ 675 (789)
Q Consensus 649 ~~p~~d~~~~~~~~~---~---~~~-----------~~e~g------~p~------------------------------ 675 (789)
..+..|+......-. . ..+ ..+|. ++.
T Consensus 197 ~~~p~dl~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~yp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (377)
T 4ezi_A 197 GSAPYGWEETMHFVMLEPGPRATAYLAYFFYSLQTYKSYWSGFDEIFAPPYNTLIPELMDGYHAVDEILQALPQDPLLIF 276 (377)
T ss_dssp ESCCCCHHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHCCSSCHHHHBCTTHHHHHHHHTSSCSCHHHHHHHSCSSGGGGB
T ss_pred cCcccCHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHhccCHHHHhCHHHHHHHHHHhhcccchhhhhhccCCCHHHHh
Confidence 988888653221000 0 000 00111 110
Q ss_pred ------------cHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCC
Q 003878 676 ------------EEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENS 743 (789)
Q Consensus 676 ------------~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~ 743 (789)
++...+.+.+.+.. .....+|+|++||.+|..||+.++.++++++++.
T Consensus 277 ~~~~~~~~~~~~~p~~~~~l~~~~~~------------~~~~~~Pvli~hG~~D~~Vp~~~~~~l~~~l~~~-------- 336 (377)
T 4ezi_A 277 QPKFSNGIISKTDRNTEILKINFNHY------------DFKPTAPLLLVGTKGDRDVPYAGAEMAYHSFRKY-------- 336 (377)
T ss_dssp CHHHHHHHHTTCSTTHHHHHHHHCCC------------CSCCSSCEEEEECTTCSSSCHHHHHHHHHHHHTT--------
T ss_pred chhhhhhcccccchHHHHHHHHhccc------------CCCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhc--------
Confidence 00011111111111 1124689999999999999999999999999987
Q ss_pred CCCCcEEEEEeCC--CCcCCCCchhhHHHHHHHHHHHHHHHhCCC
Q 003878 744 PQTNPIIGRIERK--AGHGVGLPTQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 744 ~~~~~~~l~~~~~--~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
|. ++++++++ .+|.... ......++.||.++++.+
T Consensus 337 --G~-v~~~~~~~~~~~H~~~~-----~~~~~~~~~wl~~~~~~~ 373 (377)
T 4ezi_A 337 --SD-FVWIKSVSDALDHVQAH-----PFVLKEQVDFFKQFERQE 373 (377)
T ss_dssp --CS-CEEEEESCSSCCTTTTH-----HHHHHHHHHHHHHHHTSS
T ss_pred --CC-EEEEEcCCCCCCccChH-----HHHHHHHHHHHHHhhcch
Confidence 88 99999999 8998642 356678999999998754
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-17 Score=164.43 Aligned_cols=220 Identities=14% Similarity=0.001 Sum_probs=152.5
Q ss_pred ecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcc---
Q 003878 514 PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGG--- 590 (789)
Q Consensus 514 ~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~--- 590 (789)
...+| +++.++.|.+ +.|+||++||..+.... |.. ....|.++||.|+++|+||.|.....+....
T Consensus 8 ~~~~g---~~~~~~~~~~-----~~~~vv~~hG~~~~~~~--~~~-~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~~~~ 76 (238)
T 1ufo_A 8 LTLAG---LSVLARIPEA-----PKALLLALHGLQGSKEH--ILA-LLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPR 76 (238)
T ss_dssp EEETT---EEEEEEEESS-----CCEEEEEECCTTCCHHH--HHH-TSTTTGGGTEEEEECCCTTSTTSSCCCCCTTSTT
T ss_pred cccCC---EEEEEEecCC-----CccEEEEECCCcccchH--HHH-HHHHHHhCCCEEEEecCCCCccCCCCCCcccccc
Confidence 33466 4555666764 67999999998654321 221 2334555899999999999775432211100
Q ss_pred ----cccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCcc
Q 003878 591 ----ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHA 666 (789)
Q Consensus 591 ----~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~ 666 (789)
....-....+|+.++++++.+.+. ++++++|+|+||.+++.++.++|++++++++..|...... ..
T Consensus 77 ~~~~~~~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~-~~------ 146 (238)
T 1ufo_A 77 YVEEVYRVALGFKEEARRVAEEAERRFG---LPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKL-PQ------ 146 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCEEEEEETHHHHHHHHHHHTTCCCSCEEEESCCSSCCCC-CT------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccC---CcEEEEEEChHHHHHHHHHHhccCcceEEEEecCCccchh-hh------
Confidence 000012335788888999887754 7999999999999999999999999999888766432111 00
Q ss_pred chhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHH-HhhccCCCCCCC
Q 003878 667 WVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQ-YVLCTSLENSPQ 745 (789)
Q Consensus 667 ~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~-~~~~~~~~~~~~ 745 (789)
..+..|. ....+..+++...+... ..+|+|+++|++|..||+..+.++.+.++ ..
T Consensus 147 --~~~~~~~---~~~~~~~~~~~~~~~~~---------~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~~---------- 202 (238)
T 1ufo_A 147 --GQVVEDP---GVLALYQAPPATRGEAY---------GGVPLLHLHGSRDHIVPLARMEKTLEALRPHY---------- 202 (238)
T ss_dssp --TCCCCCH---HHHHHHHSCGGGCGGGG---------TTCCEEEEEETTCTTTTHHHHHHHHHHHGGGC----------
T ss_pred --hhccCCc---ccchhhcCChhhhhhhc---------cCCcEEEEECCCCCccCcHHHHHHHHHHhhcC----------
Confidence 0112222 24456677777666553 25799999999999999999999999998 65
Q ss_pred CC-cEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 746 TN-PIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 746 ~~-~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
+. .+++++++++||.+.. +....+.+||.++++
T Consensus 203 ~~~~~~~~~~~~~~H~~~~------~~~~~~~~~l~~~l~ 236 (238)
T 1ufo_A 203 PEGRLARFVEEGAGHTLTP------LMARVGLAFLEHWLE 236 (238)
T ss_dssp TTCCEEEEEETTCCSSCCH------HHHHHHHHHHHHHHH
T ss_pred CCCceEEEEeCCCCcccHH------HHHHHHHHHHHHHHh
Confidence 65 7899999999998742 345677889888775
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.7e-16 Score=162.94 Aligned_cols=237 Identities=12% Similarity=0.042 Sum_probs=158.7
Q ss_pred EEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccc
Q 003878 512 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 591 (789)
Q Consensus 512 ~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~ 591 (789)
.+...|| .+|.+.++.|++ ++.|+||++||..+... .|.. ....|.++||.|+++|+||.|...... ..
T Consensus 21 ~~~~~~g-~~l~~~~~~~~~----~~~~~vv~~hG~~~~~~--~~~~-~~~~l~~~g~~v~~~d~~G~G~s~~~~---~~ 89 (303)
T 3pe6_A 21 HLVNADG-QYLFCRYWAPTG----TPKALIFVSHGAGEHSG--RYEE-LARMLMGLDLLVFAHDHVGHGQSEGER---MV 89 (303)
T ss_dssp EEECTTS-CEEEEEEECCSS----CCSEEEEEECCTTCCGG--GGHH-HHHHHHHTTEEEEEECCTTSTTSCSST---TC
T ss_pred eEecCCC-eEEEEEEeccCC----CCCeEEEEECCCCchhh--HHHH-HHHHHHhCCCcEEEeCCCCCCCCCCCC---CC
Confidence 5778899 999999988764 45799999999765443 4443 445555589999999999987654211 00
Q ss_pred ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc-----------
Q 003878 592 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK----------- 660 (789)
Q Consensus 592 ~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~----------- 660 (789)
...-....+|+.++++++... .+.++++++|+|+||.+++.++.++|++++++|+..|+........
T Consensus 90 ~~~~~~~~~d~~~~l~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 167 (303)
T 3pe6_A 90 VSDFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLAAKVL 167 (303)
T ss_dssp CSSTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCSSSBCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhc--cCCceEEEEEeCHHHHHHHHHHHhCcccccEEEEECccccCchhccHHHHHHHHHHH
Confidence 111223368888899988876 3456999999999999999999999999999999999876532110
Q ss_pred -----ccCCccchhhcCCCCcHHHHHHHHhcCcc----------------------cCCCCCCCCCCCCCCCCCeEEEEe
Q 003878 661 -----FTIGHAWVSDFGCSEEEEEFYWLIKYSPL----------------------HNVRRPWEQNPDKPFQYPSTLLLT 713 (789)
Q Consensus 661 -----~~~~~~~~~e~g~p~~~~~~~~l~~~sP~----------------------~~v~~~~~~~~~~~~~~pp~Li~~ 713 (789)
..........+.. .+......+.. .+. ..+.++ ..|+|+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----------~~P~l~i~ 235 (303)
T 3pe6_A 168 NSVLPNLSSGPIDSSVLS-RNKTEVDIYNS-DPLICRAGLKVCFGIQLLNAVSRVERALPKL----------TVPFLLLQ 235 (303)
T ss_dssp HTTCCSCCCCCCCGGGTC-SCHHHHHHHHT-CTTSCCSCCCHHHHHHHHHHHHHHHHHGGGC----------CSCEEEEE
T ss_pred HHhcccccCCccchhhhh-cchhHHHHhcc-CccccccchhhhhHHHHHHHHHHHHHHhhcC----------CCCEEEEe
Confidence 0000000000000 11111111111 111 122332 67999999
Q ss_pred cCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCch-hhHHHHHHHHHHHHHHHhCC
Q 003878 714 ADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT-QKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 714 g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~-~~~~~~~~~~~~fl~~~l~~ 785 (789)
|.+|..|++..+.++.+.+. +..+++.+++++||.+.... ....+....+++||.+++..
T Consensus 236 g~~D~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~gH~~~~~~p~~~~~~~~~~~~~l~~~~~~ 296 (303)
T 3pe6_A 236 GSADRLCDSKGAYLLMELAK------------SQDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRTAT 296 (303)
T ss_dssp ETTCSSBCHHHHHHHHHHCC------------CSSEEEEEETTCCSCGGGSCHHHHHHHHHHHHHHHHHTTC-
T ss_pred eCCCCCCChHHHHHHHHhcc------------cCCceEEEeCCCccceeccchHHHHHHHHHHHHHHhccCCC
Confidence 99999999998888877664 22468999999999875433 22356677899999988753
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.5e-17 Score=170.75 Aligned_cols=213 Identities=17% Similarity=0.126 Sum_probs=137.0
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
+..+.||++||..++.. .|.. +...|+++||.|+++|+||.|......... ....-.+|+.+++++|.+.
T Consensus 49 G~~~~VlllHG~~~s~~--~~~~-la~~La~~Gy~Via~Dl~GhG~S~~~~~~~----~~~~~~~d~~~~~~~l~~~--- 118 (281)
T 4fbl_A 49 GSRIGVLVSHGFTGSPQ--SMRF-LAEGFARAGYTVATPRLTGHGTTPAEMAAS----TASDWTADIVAAMRWLEER--- 118 (281)
T ss_dssp CSSEEEEEECCTTCCGG--GGHH-HHHHHHHTTCEEEECCCTTSSSCHHHHHTC----CHHHHHHHHHHHHHHHHHH---
T ss_pred CCCceEEEECCCCCCHH--HHHH-HHHHHHHCCCEEEEECCCCCCCCCccccCC----CHHHHHHHHHHHHHHHHhC---
Confidence 45567889999655432 3443 455666699999999999988653322211 1112256788888888764
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc----ccc-C--------C----ccchhhcCCCCcH-
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH----KFT-I--------G----HAWVSDFGCSEEE- 677 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~----~~~-~--------~----~~~~~e~g~p~~~- 677 (789)
.++++++|+|+||.+++.++.++|++++++|+.+|.+.+.... .+. . . .....++..+..+
T Consensus 119 -~~~v~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (281)
T 4fbl_A 119 -CDVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVKELAYPVTPV 197 (281)
T ss_dssp -CSEEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCSCCCCHHHHHHHTCTTCCSEEECCCCCCSSTTCCCCCCSEEEG
T ss_pred -CCeEEEEEECcchHHHHHHHHhCchhhhhhhcccchhcccchhhHHHHHhHhhHHhhhcchhhhhhHHHHHhhhccCch
Confidence 3689999999999999999999999999999998876543211 000 0 0 0000111111110
Q ss_pred HHHHHHHhcC--cccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeC
Q 003878 678 EEFYWLIKYS--PLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIER 755 (789)
Q Consensus 678 ~~~~~l~~~s--P~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~ 755 (789)
.....+.... .-..+.++ ..|+|+++|++|..||++++.++++++. +..+++++++
T Consensus 198 ~~~~~~~~~~~~~~~~l~~i----------~~P~Lii~G~~D~~v~~~~~~~l~~~l~------------~~~~~l~~~~ 255 (281)
T 4fbl_A 198 PAIKHLITIGAVAEMLLPRV----------KCPALIIQSREDHVVPPHNGELIYNGIG------------STEKELLWLE 255 (281)
T ss_dssp GGHHHHHHHHHHHHHHGGGC----------CSCEEEEEESSCSSSCTHHHHHHHHHCC------------CSSEEEEEES
T ss_pred HHHHHHHHhhhhcccccccc----------CCCEEEEEeCCCCCcCHHHHHHHHHhCC------------CCCcEEEEEC
Confidence 0001111100 00123333 6799999999999999999999888765 3467899999
Q ss_pred CCCcCCCCchhhHHHHHHHHHHHHHHH
Q 003878 756 KAGHGVGLPTQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 756 ~~gH~~~~~~~~~~~~~~~~~~fl~~~ 782 (789)
++||....... ..+..+.+.+||++|
T Consensus 256 ~~gH~~~~e~~-~e~v~~~i~~FL~~H 281 (281)
T 4fbl_A 256 NSYHVATLDND-KELILERSLAFIRKH 281 (281)
T ss_dssp SCCSCGGGSTT-HHHHHHHHHHHHHTC
T ss_pred CCCCcCccccC-HHHHHHHHHHHHHhC
Confidence 99998654332 235567899999864
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-16 Score=161.05 Aligned_cols=201 Identities=12% Similarity=0.059 Sum_probs=137.9
Q ss_pred EEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCC------ChhHHh-ccc---ccCC
Q 003878 526 IVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEY------GEEWHK-GGA---LAKK 595 (789)
Q Consensus 526 l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~------g~~~~~-~~~---~~~~ 595 (789)
++.|++ .++.|+||++||..+... .|. .....+.++||.|+++|.++.+.. ...|.+ .+. ....
T Consensus 14 ~~~p~~---~~~~~~vv~lHG~~~~~~--~~~-~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~w~d~~g~~~~~~~~ 87 (232)
T 1fj2_A 14 AIVPAA---RKATAAVIFLHGLGDTGH--GWA-EAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQED 87 (232)
T ss_dssp EEECCS---SCCSEEEEEECCSSSCHH--HHH-HHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBC
T ss_pred cccCCC---CCCCceEEEEecCCCccc--hHH-HHHHHHhcCCcEEEecCCCccccccccccccccccccccCCcccccc
Confidence 566765 357899999999875432 222 234455547999999855441100 000100 000 0011
Q ss_pred cc----hHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhc
Q 003878 596 QN----CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDF 671 (789)
Q Consensus 596 ~~----~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~ 671 (789)
.. ..+|+.++++++.+ ..+|+++++++|+|+||.+++.++.++|++++++|+.+|+.+......
T Consensus 88 ~~~~~~~~~~~~~~i~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~----------- 155 (232)
T 1fj2_A 88 ESGIKQAAENIKALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASFP----------- 155 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGSC-----------
T ss_pred cHHHHHHHHHHHHHHHHHhc-CCCCcCCEEEEEECHHHHHHHHHHHhCCCceeEEEEeecCCCCCcccc-----------
Confidence 11 23566666666665 346889999999999999999999999999999999999765432110
Q ss_pred CCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCc--E
Q 003878 672 GCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNP--I 749 (789)
Q Consensus 672 g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~--~ 749 (789)
. ........ .+|+|+++|++|..|++.++.++++.+++. +.+ +
T Consensus 156 ---~------------~~~~~~~~----------~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~----------~~~~~~ 200 (232)
T 1fj2_A 156 ---Q------------GPIGGANR----------DISILQCHGDCDPLVPLMFGSLTVEKLKTL----------VNPANV 200 (232)
T ss_dssp ---S------------SCCCSTTT----------TCCEEEEEETTCSSSCHHHHHHHHHHHHHH----------SCGGGE
T ss_pred ---c------------cccccccC----------CCCEEEEecCCCccCCHHHHHHHHHHHHHh----------CCCCce
Confidence 0 01122232 689999999999999999999999999987 644 8
Q ss_pred EEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 750 IGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 750 ~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
++++++++||.+. .+....+.+||.++|+.
T Consensus 201 ~~~~~~~~~H~~~------~~~~~~i~~~l~~~l~~ 230 (232)
T 1fj2_A 201 TFKTYEGMMHSSC------QQEMMDVKQFIDKLLPP 230 (232)
T ss_dssp EEEEETTCCSSCC------HHHHHHHHHHHHHHSCC
T ss_pred EEEEeCCCCcccC------HHHHHHHHHHHHHhcCC
Confidence 9999999999982 23457899999998864
|
| >1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.9e-17 Score=168.69 Aligned_cols=244 Identities=11% Similarity=0.022 Sum_probs=158.3
Q ss_pred cEEEEEEecC-CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHH--HHHHHHcCCeEEEEEeecCCCCCC
Q 003878 507 HVHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVS--RTILMRHLGAVFCIANIRGGGEYG 583 (789)
Q Consensus 507 ~~~~~~~~s~-dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~--~~~~l~~~G~~v~~~~~RG~g~~g 583 (789)
..+.+.+.|. .| .+|++++ |++. + |+|+++||..+......|... ...++.++|++|+++|.+|++.|.
T Consensus 5 ~~~~~~~~s~~~~-~~~~v~~--~p~~---~--~~v~llHG~~~~~~~~~w~~~~~~~~~l~~~~~~vv~pd~~~~~~~~ 76 (280)
T 1dqz_A 5 PVEYLQVPSASMG-RDIKVQF--QGGG---P--HAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYT 76 (280)
T ss_dssp CEEEEEEEETTTT-EEEEEEE--ECCS---S--SEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTTCTTS
T ss_pred eEEEEEEECcccC-ceeEEEE--cCCC---C--CEEEEECCCCCCCCcccccccCcHHHHHhcCCeEEEEECCCCCcccc
Confidence 3455666654 57 7887763 4332 1 589999998531112222211 234566689999999988654442
Q ss_pred hhHHhcccc--cCCcchHHHHH--HHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc
Q 003878 584 EEWHKGGAL--AKKQNCFDDFI--SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH 659 (789)
Q Consensus 584 ~~~~~~~~~--~~~~~~~~D~~--~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~ 659 (789)
. |...... ......+.+++ +.+.++.++--+++++++|+|+|+||++++.++.++|++|+++|+.+|.++.....
T Consensus 77 ~-~~~~~~~~g~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~ 155 (280)
T 1dqz_A 77 D-WYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESW 155 (280)
T ss_dssp B-CSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTSTT
T ss_pred C-CCCCCccccccccccHHHHHHHHHHHHHHHHcCCCCCceEEEEECHHHHHHHHHHHhCCchheEEEEecCcccccCcc
Confidence 1 1111000 00233455543 34444444223577899999999999999999999999999999999988764310
Q ss_pred -----c----ccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCC------------
Q 003878 660 -----K----FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDD------------ 718 (789)
Q Consensus 660 -----~----~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~------------ 718 (789)
. ......+...||.|..+ .+.+.+|..++.+.- ...+|+++.||+.|.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~p~~~~~~l~-------~~~~~~~l~~G~~D~~~~~~~~~~~~~ 224 (280)
T 1dqz_A 156 WPTLIGLAMNDSGGYNANSMWGPSSDP----AWKRNDPMVQIPRLV-------ANNTRIWVYCGNGTPSDLGGDNIPAKF 224 (280)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHCSTTSH----HHHHTCTTTTHHHHH-------HHTCEEEEECCCSCCCTTCCCSHHHHH
T ss_pred hhhhHHHHhhhccCcCHHHhcCCCCch----hhhhcCHHHHHHHHH-------hcCCeEEEEeCCCCcccccccccchhh
Confidence 0 00011123446766432 235668876554310 014799999999997
Q ss_pred --CCCcHHHHHHHHHHHHhhccCCCCCCCC-CcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 719 --RVVPLHSLKLLATMQYVLCTSLENSPQT-NPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 719 --~V~~~~~~~~~~~L~~~~~~~~~~~~~~-~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
.+++.++.+++++|++. | .++++.++++++|... .....+...+.||.+.||
T Consensus 225 ~e~~~~~~~~~~~~~L~~~----------g~~~~~~~~~~~g~H~~~----~w~~~l~~~l~~l~~~l~ 279 (280)
T 1dqz_A 225 LEGLTLRTNQTFRDTYAAD----------GGRNGVFNFPPNGTHSWP----YWNEQLVAMKADIQHVLN 279 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHT----------TCCSEEEECCSCCCSSHH----HHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC----------CCCceEEEecCCCccChH----HHHHHHHHHHHHHHHHhC
Confidence 57889999999999988 8 9999999999999752 124566788899988876
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-16 Score=161.72 Aligned_cols=195 Identities=10% Similarity=0.025 Sum_probs=135.2
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHc-----CCeEEEEEeecCC------CCCChhHHhcc-cc---cCCcchHH
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRH-----LGAVFCIANIRGG------GEYGEEWHKGG-AL---AKKQNCFD 600 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~-----~G~~v~~~~~RG~------g~~g~~~~~~~-~~---~~~~~~~~ 600 (789)
++.|+||++||..+.... |.. +...+.. .|+.|++++.++. +..+..|.... .. ......++
T Consensus 21 ~~~p~vv~lHG~g~~~~~--~~~-~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 97 (239)
T 3u0v_A 21 RHSASLIFLHGSGDSGQG--LRM-WIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKITNDCPEHLESID 97 (239)
T ss_dssp CCCEEEEEECCTTCCHHH--HHH-HHHHHHTSCCCCSSEEEEEECCCEEECGGGTTCEEECSSCCSSSSSSSCCCHHHHH
T ss_pred CCCcEEEEEecCCCchhh--HHH-HHHHHhhcccCCCceEEEeCCCCccccccCCCCccccceeccCCCcccccchhhHH
Confidence 568999999997554222 222 2333333 3799999987532 33344454421 11 11123455
Q ss_pred HHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcH
Q 003878 601 DFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEE 677 (789)
Q Consensus 601 D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~ 677 (789)
++.+.+..+++. ..+++++++++|+|+||.+++.++.++|+.++++|+.+|+.+....
T Consensus 98 ~~~~~l~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~------------------- 158 (239)
T 3u0v_A 98 VMCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKASA------------------- 158 (239)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHHHCTTSSEEEEESCCCCTTCH-------------------
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEChhhHHHHHHHHhCccccceEEEecCCCCchhH-------------------
Confidence 555555555433 3368899999999999999999999999999999999987653111
Q ss_pred HHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCC
Q 003878 678 EEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKA 757 (789)
Q Consensus 678 ~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~ 757 (789)
.+..+. .... ..||+|++||++|..||++++.+++++|++. +.++++++++++
T Consensus 159 -~~~~~~------~~~~----------~~pp~li~~G~~D~~v~~~~~~~~~~~l~~~----------~~~~~~~~~~g~ 211 (239)
T 3u0v_A 159 -VYQALQ------KSNG----------VLPELFQCHGTADELVLHSWAEETNSMLKSL----------GVTTKFHSFPNV 211 (239)
T ss_dssp -HHHHHH------HCCS----------CCCCEEEEEETTCSSSCHHHHHHHHHHHHHT----------TCCEEEEEETTC
T ss_pred -HHHHHH------hhcc----------CCCCEEEEeeCCCCccCHHHHHHHHHHHHHc----------CCcEEEEEeCCC
Confidence 011111 1111 2467999999999999999999999999987 888999999999
Q ss_pred CcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 758 GHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 758 gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
||.+. .+....+.+||.+++..
T Consensus 212 ~H~~~------~~~~~~~~~~l~~~l~~ 233 (239)
T 3u0v_A 212 YHELS------KTELDILKLWILTKLPG 233 (239)
T ss_dssp CSSCC------HHHHHHHHHHHHHHCC-
T ss_pred CCcCC------HHHHHHHHHHHHHhCCC
Confidence 99986 24567888999998864
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=6.5e-16 Score=154.76 Aligned_cols=197 Identities=15% Similarity=0.120 Sum_probs=136.9
Q ss_pred EEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHc--CCeEEEEEeecC------CCCCChhHHhc-ccc---c
Q 003878 526 IVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRH--LGAVFCIANIRG------GGEYGEEWHKG-GAL---A 593 (789)
Q Consensus 526 l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~--~G~~v~~~~~RG------~g~~g~~~~~~-~~~---~ 593 (789)
++.|++ .++.|+||++||..+... .|. .....|.+ +||.|+++|.+| +|..+..|++. +.. .
T Consensus 5 ~~~~~~---~~~~~~vv~~HG~~~~~~--~~~-~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~ 78 (218)
T 1auo_A 5 LILQPA---KPADACVIWLHGLGADRY--DFM-PVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARS 78 (218)
T ss_dssp EEECCS---SCCSEEEEEECCTTCCTT--TTH-HHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCE
T ss_pred eecCCC---CCCCcEEEEEecCCCChh--hHH-HHHHHHhhcCCceEEEeCCCCCccccCCCCCcccceecCcCCCcccc
Confidence 344543 357899999999865433 233 34567776 899999998764 22222223221 111 1
Q ss_pred CCcchH----HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHH-hCCCceeEEEecCCcccccccccccCCccch
Q 003878 594 KKQNCF----DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACIN-QRPDLFGCALAHVGVMDMLRYHKFTIGHAWV 668 (789)
Q Consensus 594 ~~~~~~----~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~-~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~ 668 (789)
.....+ +|+.+.++++.+. .+++++++++|+|+||.+++.++. ++|++++++|+.+|..+.. .+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~---------~~~ 148 (218)
T 1auo_A 79 ISLEELEVSAKMVTDLIEAQKRT-GIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTF---------GDE 148 (218)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTC---------CTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHc-CCCcccEEEEEECHHHHHHHHHHHhcCCCCccEEEEECCCCCCc---------hhh
Confidence 112223 4444455555543 368889999999999999999999 9999999999999977640 010
Q ss_pred hhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCc
Q 003878 669 SDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNP 748 (789)
Q Consensus 669 ~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 748 (789)
.++ . ... ..+|+|+++|++|..||++++.++++.++.. +.+
T Consensus 149 ~~~----~---------------~~~----------~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~~----------g~~ 189 (218)
T 1auo_A 149 LEL----S---------------ASQ----------QRIPALCLHGQYDDVVQNAMGRSAFEHLKSR----------GVT 189 (218)
T ss_dssp CCC----C---------------HHH----------HTCCEEEEEETTCSSSCHHHHHHHHHHHHTT----------TCC
T ss_pred hhh----h---------------hcc----------cCCCEEEEEeCCCceecHHHHHHHHHHHHhC----------CCc
Confidence 000 0 011 2579999999999999999999999999987 778
Q ss_pred EEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 749 IIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 749 ~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
+++++++ +||.+.. +....+.+||.++|+
T Consensus 190 ~~~~~~~-~gH~~~~------~~~~~~~~~l~~~l~ 218 (218)
T 1auo_A 190 VTWQEYP-MGHEVLP------QEIHDIGAWLAARLG 218 (218)
T ss_dssp EEEEEES-CSSSCCH------HHHHHHHHHHHHHHC
T ss_pred eEEEEec-CCCccCH------HHHHHHHHHHHHHhC
Confidence 9999999 9998742 345678899988764
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=99.69 E-value=8e-16 Score=152.63 Aligned_cols=199 Identities=15% Similarity=0.083 Sum_probs=140.9
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCH-HHHHHHHcCCeEEEEEeecCCCCCChhHH
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV-SRTILMRHLGAVFCIANIRGGGEYGEEWH 587 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~-~~~~~l~~~G~~v~~~~~RG~g~~g~~~~ 587 (789)
+...++ .|| .+|.++++.|.+ +.|+||++||+.+... .|.. .....+.++||.|+.+|+||.|... .
T Consensus 5 ~~~~~~-~~g-~~l~~~~~~~~~-----~~~~vv~~hG~~~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~---~ 72 (207)
T 3bdi_A 5 QEEFID-VNG-TRVFQRKMVTDS-----NRRSIALFHGYSFTSM--DWDKADLFNNYSKIGYNVYAPDYPGFGRSA---S 72 (207)
T ss_dssp EEEEEE-ETT-EEEEEEEECCTT-----CCEEEEEECCTTCCGG--GGGGGTHHHHHHTTTEEEEEECCTTSTTSC---C
T ss_pred eeEEEe-eCC-cEEEEEEEeccC-----CCCeEEEECCCCCCcc--ccchHHHHHHHHhCCCeEEEEcCCcccccC---c
Confidence 333343 488 999999998875 5689999999876543 3333 1445666699999999999876531 0
Q ss_pred hcccccCCcc-hHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCcc
Q 003878 588 KGGALAKKQN-CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHA 666 (789)
Q Consensus 588 ~~~~~~~~~~-~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~ 666 (789)
.. ...... .++|+.+.+..+++. .+.++++++|+|+||.+++.++.++|++++++|+..|.... .
T Consensus 73 ~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~-~--------- 138 (207)
T 3bdi_A 73 SE--KYGIDRGDLKHAAEFIRDYLKA--NGVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPAWVE-S--------- 138 (207)
T ss_dssp CT--TTCCTTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCG-G---------
T ss_pred cc--CCCCCcchHHHHHHHHHHHHHH--cCCCceEEEEECccHHHHHHHHHhCchhheEEEEeCCcccc-c---------
Confidence 00 011122 678888888888776 35579999999999999999999999999999998886211 0
Q ss_pred chhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCC
Q 003878 667 WVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQT 746 (789)
Q Consensus 667 ~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~ 746 (789)
+ . ..+.+. ..|+|+++|.+|..+++..+.++.+.+.
T Consensus 139 ----~--------~---------~~~~~~----------~~p~l~i~g~~D~~~~~~~~~~~~~~~~------------- 174 (207)
T 3bdi_A 139 ----L--------K---------GDMKKI----------RQKTLLVWGSKDHVVPIALSKEYASIIS------------- 174 (207)
T ss_dssp ----G--------H---------HHHTTC----------CSCEEEEEETTCTTTTHHHHHHHHHHST-------------
T ss_pred ----h--------h---------HHHhhc----------cCCEEEEEECCCCccchHHHHHHHHhcC-------------
Confidence 0 0 111222 4799999999999999998888776653
Q ss_pred CcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 747 NPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 747 ~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
.+++.+++++||.+..... .+....+.+||.
T Consensus 175 -~~~~~~~~~~~H~~~~~~~--~~~~~~i~~fl~ 205 (207)
T 3bdi_A 175 -GSRLEIVEGSGHPVYIEKP--EEFVRITVDFLR 205 (207)
T ss_dssp -TCEEEEETTCCSCHHHHSH--HHHHHHHHHHHH
T ss_pred -CceEEEeCCCCCCccccCH--HHHHHHHHHHHh
Confidence 2378999999998643222 345556777775
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-16 Score=161.58 Aligned_cols=184 Identities=13% Similarity=0.103 Sum_probs=133.5
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEE--eecCCCCCChhHHhccc-ccCC----cchHHHHHHHHHH
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIA--NIRGGGEYGEEWHKGGA-LAKK----QNCFDDFISASEY 608 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~--~~RG~g~~g~~~~~~~~-~~~~----~~~~~D~~~~~~~ 608 (789)
++.|+||++||+.+... .|. .....|+ .+|.|+++ +.||.|++ .|..... .... ....+|+.+++++
T Consensus 60 ~~~p~vv~~HG~~~~~~--~~~-~~~~~l~-~~~~v~~~~~d~~g~g~s--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 133 (251)
T 2r8b_A 60 AGAPLFVLLHGTGGDEN--QFF-DFGARLL-PQATILSPVGDVSEHGAA--RFFRRTGEGVYDMVDLERATGKMADFIKA 133 (251)
T ss_dssp TTSCEEEEECCTTCCHH--HHH-HHHHHHS-TTSEEEEECCSEEETTEE--ESSCBCGGGCBCHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHh--HHH-HHHHhcC-CCceEEEecCCcCCCCCc--ccccCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 56799999999775432 232 2345566 57999999 78887643 2221110 1111 1235778888888
Q ss_pred HHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCc
Q 003878 609 LISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSP 688 (789)
Q Consensus 609 L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP 688 (789)
+.++. +.++++++|+|+||.+++.++.++|++++++|+..|+.+... .+
T Consensus 134 ~~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~-----------------------------~~ 182 (251)
T 2r8b_A 134 NREHY--QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP-----------------------------KI 182 (251)
T ss_dssp HHHHH--TCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC-----------------------------CC
T ss_pred HHhcc--CCCcEEEEEECHHHHHHHHHHHhCCcccCeEEEEecCCCccc-----------------------------cc
Confidence 87763 778999999999999999999999999999999999765321 00
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhH
Q 003878 689 LHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKM 768 (789)
Q Consensus 689 ~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~ 768 (789)
.... ..+|+|+++|++|..|++.++.+++++|++. +.++++ +++++||.+.
T Consensus 183 --~~~~----------~~~P~li~~g~~D~~~~~~~~~~~~~~l~~~----------~~~~~~-~~~~~gH~~~------ 233 (251)
T 2r8b_A 183 --SPAK----------PTRRVLITAGERDPICPVQLTKALEESLKAQ----------GGTVET-VWHPGGHEIR------ 233 (251)
T ss_dssp --CCCC----------TTCEEEEEEETTCTTSCHHHHHHHHHHHHHH----------SSEEEE-EEESSCSSCC------
T ss_pred --cccc----------cCCcEEEeccCCCccCCHHHHHHHHHHHHHc----------CCeEEE-EecCCCCccC------
Confidence 1111 2579999999999999999999999999987 777777 5567899983
Q ss_pred HHHHHHHHHHHHHHhCC
Q 003878 769 IDEAADRYGFMAKMLGA 785 (789)
Q Consensus 769 ~~~~~~~~~fl~~~l~~ 785 (789)
.+....+.+||.++|+.
T Consensus 234 ~~~~~~~~~~l~~~l~~ 250 (251)
T 2r8b_A 234 SGEIDAVRGFLAAYGGG 250 (251)
T ss_dssp HHHHHHHHHHHGGGC--
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 23456788999998875
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-16 Score=159.00 Aligned_cols=197 Identities=17% Similarity=0.120 Sum_probs=138.7
Q ss_pred eEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccccc-CC---
Q 003878 520 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA-KK--- 595 (789)
Q Consensus 520 ~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~-~~--- 595 (789)
..+...++.|.+ .+.|+||++||..+... .|.. +...+. .|+.|+++|.++....|..|....... ..
T Consensus 16 ~~l~~~~~~~~~----~~~p~vv~lHG~g~~~~--~~~~-~~~~l~-~~~~vv~~d~~~~~~~g~~~~~~~~~~~~~~~~ 87 (223)
T 3b5e_A 16 LAFPYRLLGAGK----ESRECLFLLHGSGVDET--TLVP-LARRIA-PTATLVAARGRIPQEDGFRWFERIDPTRFEQKS 87 (223)
T ss_dssp SSSCEEEESTTS----SCCCEEEEECCTTBCTT--TTHH-HHHHHC-TTSEEEEECCSEEETTEEESSCEEETTEECHHH
T ss_pred CCceEEEeCCCC----CCCCEEEEEecCCCCHH--HHHH-HHHhcC-CCceEEEeCCCCCcCCccccccccCCCcccHHH
Confidence 455555544432 23499999999765433 3433 455666 599999999776322244554321110 11
Q ss_pred -cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCC
Q 003878 596 -QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCS 674 (789)
Q Consensus 596 -~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p 674 (789)
....+|+.+.++++.++..+++++++++|+|+||.+++.++.++|++++++|+.+|...... +
T Consensus 88 ~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~----------------~ 151 (223)
T 3b5e_A 88 ILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDH----------------V 151 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCSS----------------C
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcHHHHHHHHHHhCccccceEEEecCccCccc----------------c
Confidence 12345667777777766446889999999999999999999999999999999988654210 0
Q ss_pred CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEe
Q 003878 675 EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIE 754 (789)
Q Consensus 675 ~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~ 754 (789)
+ .... ..+|+|+++|++|..||+.++. +++.|+.. |.+++++++
T Consensus 152 -------------~--~~~~----------~~~P~li~~G~~D~~v~~~~~~-~~~~l~~~----------g~~~~~~~~ 195 (223)
T 3b5e_A 152 -------------P--ATDL----------AGIRTLIIAGAADETYGPFVPA-LVTLLSRH----------GAEVDARII 195 (223)
T ss_dssp -------------C--CCCC----------TTCEEEEEEETTCTTTGGGHHH-HHHHHHHT----------TCEEEEEEE
T ss_pred -------------c--cccc----------cCCCEEEEeCCCCCcCCHHHHH-HHHHHHHC----------CCceEEEEe
Confidence 0 1111 2579999999999999999999 99999987 888999999
Q ss_pred CCCCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 755 RKAGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 755 ~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
+ +||.+.. +....+.+||.+.+
T Consensus 196 ~-~gH~~~~------~~~~~i~~~l~~~~ 217 (223)
T 3b5e_A 196 P-SGHDIGD------PDAAIVRQWLAGPI 217 (223)
T ss_dssp S-CCSCCCH------HHHHHHHHHHHCC-
T ss_pred c-CCCCcCH------HHHHHHHHHHHhhh
Confidence 9 9999842 23457888887654
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-16 Score=164.03 Aligned_cols=230 Identities=12% Similarity=0.011 Sum_probs=142.2
Q ss_pred EecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCC-CCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccc
Q 003878 513 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP-SFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 591 (789)
Q Consensus 513 ~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~-~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~ 591 (789)
++..+| . ++.++.|++ ++.|+|||+|||.....+. .+......++.+.|+.|+.+|||+.++.
T Consensus 9 ~~~~~~-~--~~~~y~p~~----~~~p~iv~~HGGg~~~g~~~~~~~~~~~~l~~~g~~Vi~vdYrlaPe~--------- 72 (274)
T 2qru_A 9 QTLANG-A--TVTIYPTTT----EPTNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYLLAPNT--------- 72 (274)
T ss_dssp EECTTS-C--EEEEECCSS----SSCEEEEEECCSTTTSCCGGGCCHHHHHHHHTTTEEEEEECCCCTTTS---------
T ss_pred ccccCC-e--eEEEEcCCC----CCCcEEEEEeCccccCCChhhchHHHHHHHHHCCCEEEEeCCCCCCCC---------
Confidence 344567 4 456677764 4679999999987443332 2333445667768999999999987653
Q ss_pred ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHH---hCCCceeEEEecCCcccccccccc---cC--
Q 003878 592 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACIN---QRPDLFGCALAHVGVMDMLRYHKF---TI-- 663 (789)
Q Consensus 592 ~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~---~~pd~f~a~v~~~p~~d~~~~~~~---~~-- 663 (789)
..+..++|+.++++||.++.. +++||+|+|+|+||.+++.++. ..|...+++|...|+.|....... ..
T Consensus 73 --~~p~~~~D~~~al~~l~~~~~-~~~~i~l~G~SaGG~lA~~~a~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~ 149 (274)
T 2qru_A 73 --KIDHILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTDLEFIKEPRKLLKQA 149 (274)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTT-TTCCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCSCSGGGGSCCCSCSSC
T ss_pred --CCcHHHHHHHHHHHHHHhccc-cCCcEEEEEECHHHHHHHHHHHHHhcCCCCceEEEEEcccccccccCCchhhcccc
Confidence 123458999999999998743 3789999999999999999887 357788899988887772111000 00
Q ss_pred -Cccchhhc-C-CC------C-cHHH---------HHHHHhcCcc-----cCCCCCCCCCCCCCCCCCeEEEEecCCCCC
Q 003878 664 -GHAWVSDF-G-CS------E-EEEE---------FYWLIKYSPL-----HNVRRPWEQNPDKPFQYPSTLLLTADHDDR 719 (789)
Q Consensus 664 -~~~~~~e~-g-~p------~-~~~~---------~~~l~~~sP~-----~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~ 719 (789)
...+...+ . .+ . .... +..+...... ..+... .-...||+||++|+.|..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~lpP~li~~G~~D~~ 223 (274)
T 2qru_A 150 ISAKEIAAIDQTKPVWDDPFLSRYLLYHYSIQQALLPHFYGLPENGDWSAYALSDE------TLKTFPPCFSTASSSDEE 223 (274)
T ss_dssp CCSGGGTTSCCSSCCSCCTTCTTHHHHHHHHHTTCHHHHHTCCTTSCCGGGCCCHH------HHHTSCCEEEEEETTCSS
T ss_pred ccHHHHhhhcccCCCCCCccccchhhhhhhhhhcchhhccCcccccccccCCCChh------hhcCCCCEEEEEecCCCC
Confidence 00000000 0 00 0 0000 0000000000 001100 001248999999999999
Q ss_pred CCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCc--hhhHHHHHHHHHHHHHH
Q 003878 720 VVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP--TQKMIDEAADRYGFMAK 781 (789)
Q Consensus 720 V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~--~~~~~~~~~~~~~fl~~ 781 (789)
++..++.++.+++. .++++++++++|++... .....+..+.+.+||.+
T Consensus 224 ~~~~~~~~l~~~~~--------------~~~l~~~~g~~H~~~~~~~~~~~~~~~~~~~~fl~~ 273 (274)
T 2qru_A 224 VPFRYSKKIGRTIP--------------ESTFKAVYYLEHDFLKQTKDPSVITLFEQLDSWLKE 273 (274)
T ss_dssp SCTHHHHHHHHHST--------------TCEEEEECSCCSCGGGGTTSHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHhCC--------------CcEEEEcCCCCcCCccCcCCHHHHHHHHHHHHHHhh
Confidence 99888777766543 45899999999997432 12223556778888864
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-16 Score=159.16 Aligned_cols=216 Identities=11% Similarity=0.051 Sum_probs=142.5
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCC-ChhHHhcccccCCcchHHHHHHHHHHHHHcC
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEY-GEEWHKGGALAKKQNCFDDFISASEYLISAG 613 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~-g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~ 613 (789)
.++.|+||++||..+... .|.. ....|.++||.|+++|+||.|.. +...... .......+|+.+++++|...
T Consensus 19 ~~~~~~vv~~HG~~~~~~--~~~~-~~~~l~~~G~~v~~~d~~g~g~s~~~~~~~~---~~~~~~~~d~~~~i~~l~~~- 91 (251)
T 3dkr_A 19 EGTDTGVVLLHAYTGSPN--DMNF-MARALQRSGYGVYVPLFSGHGTVEPLDILTK---GNPDIWWAESSAAVAHMTAK- 91 (251)
T ss_dssp CCSSEEEEEECCTTCCGG--GGHH-HHHHHHHTTCEEEECCCTTCSSSCTHHHHHH---CCHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCceEEEeCCCCCCHH--HHHH-HHHHHHHCCCEEEecCCCCCCCCChhhhcCc---ccHHHHHHHHHHHHHHHHHh-
Confidence 346689999999766543 3433 44556568999999999998866 3322211 01122257888888888876
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCC---ccchhhcCCCCcHH--------HHHH
Q 003878 614 YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG---HAWVSDFGCSEEEE--------EFYW 682 (789)
Q Consensus 614 ~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~---~~~~~e~g~p~~~~--------~~~~ 682 (789)
.++++++|+|+||.+++.++.++|++++++|+..|+............ ..+....+...... ....
T Consensus 92 ---~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (251)
T 3dkr_A 92 ---YAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLVPGFLKYAEYMNRLAGKSDESTQILAYLPGQLAA 168 (251)
T ss_dssp ---CSEEEEEESHHHHHHHHHHHHHCSSCCEEEESSCCCCTTCBCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred ---cCCeEEEEechHHHHHHHHHHhCccceeeEEEecchhhccchhhHHHHHHHHHHHhhcccCcchhhHHhhhHHHHHH
Confidence 579999999999999999999999999999999998764321100000 00000111110100 0111
Q ss_pred HHhc--CcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcC
Q 003878 683 LIKY--SPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHG 760 (789)
Q Consensus 683 l~~~--sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~ 760 (789)
+... .+...+.+. .+|+|+++|.+|..+++..+.++++++.. ..++++.+++++||.
T Consensus 169 ~~~~~~~~~~~~~~~----------~~P~l~i~g~~D~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~gH~ 227 (251)
T 3dkr_A 169 IDQFATTVAADLNLV----------KQPTFIGQAGQDELVDGRLAYQLRDALIN-----------AARVDFHWYDDAKHV 227 (251)
T ss_dssp HHHHHHHHHHTGGGC----------CSCEEEEEETTCSSBCTTHHHHHHHHCTT-----------CSCEEEEEETTCCSC
T ss_pred HHHHHHHHhcccccc----------CCCEEEEecCCCcccChHHHHHHHHHhcC-----------CCCceEEEeCCCCcc
Confidence 1111 112334443 68999999999999999999998887763 046789999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHH
Q 003878 761 VGLPTQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 761 ~~~~~~~~~~~~~~~~~fl~~~ 782 (789)
...... ..+....+.+||.+.
T Consensus 228 ~~~~~~-~~~~~~~i~~fl~~~ 248 (251)
T 3dkr_A 228 ITVNSA-HHALEEDVIAFMQQE 248 (251)
T ss_dssp TTTSTT-HHHHHHHHHHHHHTT
T ss_pred cccccc-hhHHHHHHHHHHHhh
Confidence 865532 246777889999764
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-14 Score=158.85 Aligned_cols=262 Identities=13% Similarity=0.042 Sum_probs=166.8
Q ss_pred EEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEE
Q 003878 137 VSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFY 216 (789)
Q Consensus 137 ~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 216 (789)
++|||||++|||+.+..| ..+|+++|+++|+..+.. ... ..
T Consensus 41 ~~~SpDg~~l~~~~~~~g--~~~l~~~d~~~g~~~~lt--~~~---------------------~~-------------- 81 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDG--PWNYYLLDLNTQVATQLT--EGR---------------------GD-------------- 81 (388)
T ss_dssp CCBCTTSCEEEEEECTTS--SCEEEEEETTTCEEEECC--CSS---------------------CB--------------
T ss_pred ccCCCCCCEEEEEEcCCC--CceEEEEeCCCCceEEee--eCC---------------------CC--------------
Confidence 789999999999987555 468999999999765422 110 00
Q ss_pred EeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecC
Q 003878 217 LFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDP 296 (789)
Q Consensus 217 ~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~ 296 (789)
....++|||||+.|+|...+ ..|+++++.++.. ..++..+
T Consensus 82 -------------------~~~~~~~spdg~~l~~~~~~-------------------~~l~~~d~~~g~~--~~~~~~~ 121 (388)
T 3pe7_A 82 -------------------NTFGGFLSPDDDALFYVKDG-------------------RNLMRVDLATLEE--NVVYQVP 121 (388)
T ss_dssp -------------------CSSSCEECTTSSEEEEEETT-------------------TEEEEEETTTCCE--EEEEECC
T ss_pred -------------------CccceEEcCCCCEEEEEeCC-------------------CeEEEEECCCCcc--eeeeech
Confidence 12367899999999998632 3699999987643 3455554
Q ss_pred CCCeeEEEEEEecCCcEEEEEEEcC-----------------CCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc
Q 003878 297 EHPKYIFSGHVTEDGQYLVMCIEEN-----------------CDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF 359 (789)
Q Consensus 297 ~~~~~~~~~~~SpDG~~l~~~~~~~-----------------~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~ 359 (789)
...........+|||+.++...... ......||++|++++. ...+....
T Consensus 122 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--------------~~~l~~~~ 187 (388)
T 3pe7_A 122 AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE--------------STVILQEN 187 (388)
T ss_dssp TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC--------------EEEEEEES
T ss_pred hhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc--------------eEEeecCC
Confidence 3211112234599999987644221 1124789999998853 22333221
Q ss_pred -cceeEEEec-CCCEEEEEECCC--CCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCC-EEEEEEEeCCeE--EE
Q 003878 360 -DAQYEVIAN-DDTVFTFLTNKD--APKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKY--VL 432 (789)
Q Consensus 360 -~~~~~~~s~-dG~~l~~~tn~~--~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~-~lv~~~~~~g~~--~L 432 (789)
......|+| ||+.|++..+.. ....+|+.++++++. .+.+........+..+.|++++ .|++....++.. .|
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 266 (388)
T 3pe7_A 188 QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFI 266 (388)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEE
T ss_pred ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceE
Confidence 123456999 999999888742 125689999998765 5666654432356678899864 476666665544 59
Q ss_pred EEEECCCCceeeecc-cCCe-eE----EEeecccCCcEEEEEEcC-----CCCCcEEEEEECCCCCceEEEeee
Q 003878 433 QIRDLKNGSLLHQLP-IEIG-SV----NAISARREDSVVFISFTS-----FLIPGIVYQCNLKTETPEMKIFRE 495 (789)
Q Consensus 433 ~~~dl~tG~~~~~l~-~~~~-~v----~~~s~s~d~~~l~~~~ss-----~~~P~~ly~~dl~tg~~~~~~l~~ 495 (789)
++||+++|+. +.+. .+.. .. ....++||++.++++... ......||++|+.+++ .+.+..
T Consensus 267 ~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~l~~ 337 (388)
T 3pe7_A 267 YSADPETLEN-RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGT--QHRVAR 337 (388)
T ss_dssp EEECTTTCCE-EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTE--EEEEEE
T ss_pred EEEecCCCce-EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCc--eEEecc
Confidence 9999998875 3432 2210 11 112478899888876532 2456799999999884 555654
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-15 Score=154.95 Aligned_cols=190 Identities=16% Similarity=0.123 Sum_probs=132.9
Q ss_pred CCCCccEEEEEcCCCCccCCCCCCHHHHHHHHc--CCeEEEEEeecCC------CCCChhHHhc-ccc---cCCcchHHH
Q 003878 534 LDGSHPCLLYGYGGFNISVTPSFSVSRTILMRH--LGAVFCIANIRGG------GEYGEEWHKG-GAL---AKKQNCFDD 601 (789)
Q Consensus 534 ~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~--~G~~v~~~~~RG~------g~~g~~~~~~-~~~---~~~~~~~~D 601 (789)
.+++.|+||++||..+... .|.. ....+.+ +||.|+++|.+|. |..+..|.+. +.. ......+++
T Consensus 20 ~~~~~~~vv~lHG~~~~~~--~~~~-~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~~~~~~~~~~ 96 (226)
T 3cn9_A 20 APNADACIIWLHGLGADRT--DFKP-VAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPARAIDEDQLNA 96 (226)
T ss_dssp CTTCCEEEEEECCTTCCGG--GGHH-HHHHHHHHCTTEEEEECCCCEEECGGGTSCEEECSSCBCCSSSTTCBCHHHHHH
T ss_pred CCCCCCEEEEEecCCCChH--HHHH-HHHHHhhcCCCcEEEeecCCCCccccCCCCccccccccccccccccccchhHHH
Confidence 3567899999999875533 2333 4455665 8999999988842 2112223221 111 111223444
Q ss_pred HH----HHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHH-hCCCceeEEEecCCcccccccccccCCccchhhcCCCCc
Q 003878 602 FI----SASEYLISAGYTQSRKLCIEGGSNGGLLVGACIN-QRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEE 676 (789)
Q Consensus 602 ~~----~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~-~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~ 676 (789)
.. +.++.+.+. .+++++|+++|+|+||.+++.++. ++|++++++|+.+|+.+.....
T Consensus 97 ~~~~~~~~~~~~~~~-~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~~~----------------- 158 (226)
T 3cn9_A 97 SADQVIALIDEQRAK-GIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFDDL----------------- 158 (226)
T ss_dssp HHHHHHHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHHHTCSSCCSEEEEESCCCGGGGGC-----------------
T ss_pred HHHHHHHHHHHHHHc-CCCcccEEEEEECHHHHHHHHHHHhcCccCcceEEEecCcCCCchhh-----------------
Confidence 44 444444442 367889999999999999999999 9999999999999976542111
Q ss_pred HHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCC
Q 003878 677 EEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERK 756 (789)
Q Consensus 677 ~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~ 756 (789)
.+.+ .. ..+|+|+++|++|..||++++.++++.++.. +.++++++++
T Consensus 159 --------~~~~----~~----------~~~P~lii~G~~D~~~~~~~~~~~~~~l~~~----------g~~~~~~~~~- 205 (226)
T 3cn9_A 159 --------ALDE----RH----------KRIPVLHLHGSQDDVVDPALGRAAHDALQAQ----------GVEVGWHDYP- 205 (226)
T ss_dssp --------CCCT----GG----------GGCCEEEEEETTCSSSCHHHHHHHHHHHHHT----------TCCEEEEEES-
T ss_pred --------hhcc----cc----------cCCCEEEEecCCCCccCHHHHHHHHHHHHHc----------CCceeEEEec-
Confidence 0011 12 2579999999999999999999999999987 7789999999
Q ss_pred CCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 757 AGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 757 ~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
+||.+.. +....+.+||.++|
T Consensus 206 ~gH~~~~------~~~~~i~~~l~~~l 226 (226)
T 3cn9_A 206 MGHEVSL------EEIHDIGAWLRKRL 226 (226)
T ss_dssp CCSSCCH------HHHHHHHHHHHHHC
T ss_pred CCCCcch------hhHHHHHHHHHhhC
Confidence 9998732 34567889998764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-14 Score=177.52 Aligned_cols=340 Identities=9% Similarity=0.046 Sum_probs=206.0
Q ss_pred CCCCceEeCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecC-CceEEEE
Q 003878 82 RYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYS-GSDWATI 160 (789)
Q Consensus 82 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~-g~~~~~i 160 (789)
.+..|...|++++|... ..||+.+..+++.+.|... ...+..++|||||++|||+.... .....+|
T Consensus 16 ~~~~~~~S~~~iaf~~~------~~l~~~~~~gg~~~~lt~~-------~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i 82 (1045)
T 1k32_A 16 LLLNPDIHGDRIIFVCC------DDLWEHDLKSGSTRKIVSN-------LGVINNARFFPDGRKIAIRVMRGSSLNTADL 82 (1045)
T ss_dssp CCEEEEEETTEEEEEET------TEEEEEETTTCCEEEEECS-------SSEEEEEEECTTSSEEEEEEEESTTCCEEEE
T ss_pred eEeCcEEeCCEEEEEEC------CcEEEEECCCCcEEEeeeC-------CCcccCeEECCCCCEEEEEEeeccCCCCCeE
Confidence 34455556888888664 2488887666666666542 23578899999999999987651 1225799
Q ss_pred EEEEcCCCceecccccc----------cccccccCccceeeeeec--------ccc--ccccccc---------------
Q 003878 161 KLMRIEDQIVEADALSW----------VCFCFSHSFGYFFHLTIS--------LLN--VPTYKLF--------------- 205 (789)
Q Consensus 161 ~v~dl~tg~~~~~~~~~----------~~~~~~~~~~~~~~~~~~--------~~~--~p~~~~~--------------- 205 (789)
++||+++|+....+... ....|++....++.-... .+. ...++..
T Consensus 83 ~~~d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG 162 (1045)
T 1k32_A 83 YFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADG 162 (1045)
T ss_dssp EEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETT
T ss_pred EEEECCCCCeEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCC
Confidence 99999998643211100 011222222211111000 000 0000000
Q ss_pred ------------------------ccc--c---------------cce--eeEEEeeeccccceeeeeeec------cc-
Q 003878 206 ------------------------LYL--R---------------GIF--FFFYLFSLVKSTIYSFWSVVS------QF- 235 (789)
Q Consensus 206 ------------------------~~~--~---------------~~~--~~~~~~~s~~~g~~~l~~~~~------~~- 235 (789)
+|+ . ... --+++|+++++|..+||.++. .+
T Consensus 163 ~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~ 242 (1045)
T 1k32_A 163 RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHT 242 (1045)
T ss_dssp EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECC
T ss_pred EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEec
Confidence 000 0 000 014678888889999998875 11
Q ss_pred ---ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCC---------CCeeEE
Q 003878 236 ---KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE---------HPKYIF 303 (789)
Q Consensus 236 ---~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~---------~~~~~~ 303 (789)
....++|||||+.|+|... ..|+++++.+. .+....... +...+.
T Consensus 243 ~~~~~~~~~~SpDG~~la~~~~--------------------~~i~~~d~~~~---~l~~l~~~~~~~~~~~~~~~~~v~ 299 (1045)
T 1k32_A 243 SFTDYYPRHLNTDGRRILFSKG--------------------GSIYIFNPDTE---KIEKIEIGDLESPEDRIISIPSKF 299 (1045)
T ss_dssp CCCSSCEEEEEESSSCEEEEET--------------------TEEEEECTTTC---CEEECCCCCCCBCCSEEEECGGGG
T ss_pred CCCCcceeeEcCCCCEEEEEeC--------------------CEEEEecCCce---EeeeeccCcccccccccccccccc
Confidence 1346799999999998742 24777776321 111111100 001234
Q ss_pred EEEEe-cCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc--ceeEEEecCCCEEEEEECCC
Q 003878 304 SGHVT-EDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD--AQYEVIANDDTVFTFLTNKD 380 (789)
Q Consensus 304 ~~~~S-pDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~s~dG~~l~~~tn~~ 380 (789)
.+.|| |||++|++.. ...++++++.++. ...+..... .....|+ ||+.|++.++
T Consensus 300 ~~~~S~pdG~~la~~~------~~~i~~~~~~~~~--------------~~~~~~~~~~~~~~~~~s-dg~~l~~~s~-- 356 (1045)
T 1k32_A 300 AEDFSPLDGDLIAFVS------RGQAFIQDVSGTY--------------VLKVPEPLRIRYVRRGGD-TKVAFIHGTR-- 356 (1045)
T ss_dssp EEEEEECGGGCEEEEE------TTEEEEECTTSSB--------------EEECSCCSCEEEEEECSS-SEEEEEEEET--
T ss_pred eeeecCCCCCEEEEEE------cCEEEEEcCCCCc--------------eEEccCCCcceEEeeeEc-CCCeEEEEEC--
Confidence 68999 9999999876 2468999987642 112222111 1224488 9999998876
Q ss_pred CCCceEE-EEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecc
Q 003878 381 APKYKII-RVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISAR 459 (789)
Q Consensus 381 ~~~~~L~-~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s 459 (789)
..+|+ .+++++++ .+.+..+ ...+..+++++++..++....++ .|++||+++|+....+..+.+.+..++++
T Consensus 357 --~~~l~~~~d~~~~~-~~~l~~~--~~~~~~~~~SpDG~~la~~~~~~--~v~~~d~~tg~~~~~~~~~~~~v~~~~~S 429 (1045)
T 1k32_A 357 --EGDFLGIYDYRTGK-AEKFEEN--LGNVFAMGVDRNGKFAVVANDRF--EIMTVDLETGKPTVIERSREAMITDFTIS 429 (1045)
T ss_dssp --TEEEEEEEETTTCC-EEECCCC--CCSEEEEEECTTSSEEEEEETTS--EEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred --CCceEEEEECCCCC-ceEecCC--ccceeeeEECCCCCEEEEECCCC--eEEEEECCCCceEEeccCCCCCccceEEC
Confidence 36899 99998776 5555532 35577899998766666666554 79999999887643333445555677899
Q ss_pred cCCcEEEEEEcCC------CCCcEEEEEECCCCC
Q 003878 460 REDSVVFISFTSF------LIPGIVYQCNLKTET 487 (789)
Q Consensus 460 ~d~~~l~~~~ss~------~~P~~ly~~dl~tg~ 487 (789)
||++.+++..... ..+..++++|+.+++
T Consensus 430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred CCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 9999887765532 456799999998873
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-15 Score=158.97 Aligned_cols=238 Identities=13% Similarity=0.070 Sum_probs=149.4
Q ss_pred CcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChh
Q 003878 506 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 585 (789)
Q Consensus 506 ~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~ 585 (789)
+..+.+.+++ +| ..+.+.++.+... .++.|+||++||..+... .|.. ....|.++||.|+++|+||.|....
T Consensus 18 ~~~~~~~~~~-~~-~~~~~~~~~~~~~--~~~~p~vv~~hG~~~~~~--~~~~-~~~~l~~~g~~v~~~d~~G~G~s~~- 89 (315)
T 4f0j_A 18 YPVHYLDFTS-QG-QPLSMAYLDVAPK--KANGRTILLMHGKNFCAG--TWER-TIDVLADAGYRVIAVDQVGFCKSSK- 89 (315)
T ss_dssp SCCEEEEEEE-TT-EEEEEEEEEECCS--SCCSCEEEEECCTTCCGG--GGHH-HHHHHHHTTCEEEEECCTTSTTSCC-
T ss_pred ccceeEEEec-CC-CCeeEEEeecCCC--CCCCCeEEEEcCCCCcch--HHHH-HHHHHHHCCCeEEEeecCCCCCCCC-
Confidence 4566777765 56 6777666555432 356799999999876543 3444 3455555899999999999875432
Q ss_pred HHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc---ccc
Q 003878 586 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH---KFT 662 (789)
Q Consensus 586 ~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~---~~~ 662 (789)
......+++|+.+.+..+++. .+.++++++|+|+||.+++.++.++|++++++|+..|+....... ...
T Consensus 90 ------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~ 161 (315)
T 4f0j_A 90 ------PAHYQYSFQQLAANTHALLER--LGVARASVIGHSMGGMLATRYALLYPRQVERLVLVNPIGLEDWKALGVPWR 161 (315)
T ss_dssp ------CSSCCCCHHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCSSCHHHHTCCCC
T ss_pred ------CCccccCHHHHHHHHHHHHHH--hCCCceEEEEecHHHHHHHHHHHhCcHhhheeEEecCcccCCcccccchhh
Confidence 112345678888888888776 345699999999999999999999999999999998854211000 000
Q ss_pred CCccchh----------------hcCC----CCcHH-----------------------HHHHHHhcCcccCCCCCCCCC
Q 003878 663 IGHAWVS----------------DFGC----SEEEE-----------------------EFYWLIKYSPLHNVRRPWEQN 699 (789)
Q Consensus 663 ~~~~~~~----------------e~g~----p~~~~-----------------------~~~~l~~~sP~~~v~~~~~~~ 699 (789)
....|.. .+.. +.... .+..+...+....+.++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---- 237 (315)
T 4f0j_A 162 SVDDWYRRDLQTSAEGIRQYQQATYYAGEWRPEFDRWVQMQAGMYRGKGRESVAWNSALTYDMIFTQPVVYELDRL---- 237 (315)
T ss_dssp CHHHHHHHHTTCCHHHHHHHHHHHTSTTCCCGGGHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHCCCGGGGGGC----
T ss_pred hhHHHHhhcccCChHHHHHHHHHHHhccccCCchHHHHHHHHHHhhccCcchhhHHHHHhcCccccchhhhhcccC----
Confidence 0000000 0000 00000 11111222233344444
Q ss_pred CCCCCCCCeEEEEecCCCCCCCcHHH------------HHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhh
Q 003878 700 PDKPFQYPSTLLLTADHDDRVVPLHS------------LKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQK 767 (789)
Q Consensus 700 ~~~~~~~pp~Li~~g~~D~~V~~~~~------------~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~ 767 (789)
..|+|+++|++|..||..+. .+..+.+.+. ...+++.+++++||.......
T Consensus 238 ------~~P~lii~G~~D~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~gH~~~~~~p- 300 (315)
T 4f0j_A 238 ------QMPTLLLIGEKDNTAIGKDAAPAELKARLGNYAQLGKDAARR----------IPQATLVEFPDLGHTPQIQAP- 300 (315)
T ss_dssp ------CSCEEEEEETTCCCCTTGGGSCHHHHTTSCCHHHHHHHHHHH----------STTEEEEEETTCCSCHHHHSH-
T ss_pred ------CCCeEEEEecCCCcCccccccccccccccccchhhhhHHHhh----------cCCceEEEeCCCCcchhhhCH-
Confidence 68999999999999995443 4455555554 345789999999998643222
Q ss_pred HHHHHHHHHHHHHH
Q 003878 768 MIDEAADRYGFMAK 781 (789)
Q Consensus 768 ~~~~~~~~~~fl~~ 781 (789)
.+..+.+.+||.+
T Consensus 301 -~~~~~~i~~fl~~ 313 (315)
T 4f0j_A 301 -ERFHQALLEGLQT 313 (315)
T ss_dssp -HHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHhcc
Confidence 3455667777753
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-15 Score=159.75 Aligned_cols=205 Identities=10% Similarity=-0.036 Sum_probs=135.6
Q ss_pred cEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCC---CC-HHHHHHHHcC----CeEEEEEeecC
Q 003878 507 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPS---FS-VSRTILMRHL----GAVFCIANIRG 578 (789)
Q Consensus 507 ~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~---~~-~~~~~~l~~~----G~~v~~~~~RG 578 (789)
..+.+.+.+.+| .++++++.|++..++++.|+|+++||+.+....+. .. ......|.++ |++|+++|.+|
T Consensus 40 ~~~~~~~~s~~~--~~~~~vy~P~~~~~~~~~Pvlv~lHG~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ivv~pd~~~ 117 (297)
T 1gkl_A 40 RIVKETYTGING--TKSLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNG 117 (297)
T ss_dssp EEEEEEEEETTE--EEEEEEEECTTCCTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHTTSSCCEEEEECCSCS
T ss_pred eEEEEEEEcCCC--EEEEEEEeCCCCCCCCCCCEEEEECCCCCCcchhhcccchHHHHHHHHHHcCCCCCEEEEEecCcC
Confidence 467788888765 88999999998766678999999999876543221 11 1223333335 59999999998
Q ss_pred CCCCChhHHhcccccCCcchHHHHHHHHHHHHHcC---------CCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEec
Q 003878 579 GGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG---------YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAH 649 (789)
Q Consensus 579 ~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~---------~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~ 649 (789)
+.+.+..|.. ...+|++..++...... ..|+++++|+|+|+||++++.++.++|++|+++++.
T Consensus 118 ~~~~~~~~~~--------~~~~~l~~~i~~~~~~~~~~~~~~~i~~d~~~~~i~G~S~GG~~al~~a~~~p~~f~~~v~~ 189 (297)
T 1gkl_A 118 GNCTAQNFYQ--------EFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPL 189 (297)
T ss_dssp TTCCTTTHHH--------HHHHTHHHHHHHHSCSSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CccchHHHHH--------HHHHHHHHHHHHhCCccccccccccccCCccceEEEEECHHHHHHHHHHHhCchhhheeeEe
Confidence 6543333321 11234444333322110 137789999999999999999999999999999999
Q ss_pred CCcccccccccccCCccchhhcCCCCcHHHH-HHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHH
Q 003878 650 VGVMDMLRYHKFTIGHAWVSDFGCSEEEEEF-YWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKL 728 (789)
Q Consensus 650 ~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~-~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~ 728 (789)
+|...+... + . ...... +.+.. ..++.. ..++++.+|++|.. +.++.++
T Consensus 190 sg~~~~~~~-----~--~-------~~~~~~~~~~~~----~~~~~~----------~~~l~~~~G~~D~~--~~~~~~l 239 (297)
T 1gkl_A 190 SGDYWYGNS-----P--Q-------DKANSIAEAINR----SGLSKR----------EYFVFAATGSEDIA--YANMNPQ 239 (297)
T ss_dssp SCCCCBSSS-----H--H-------HHHHHHHHHHHH----HTCCTT----------SCEEEEEEETTCTT--HHHHHHH
T ss_pred ccccccCCc-----c--c-------hhhhHHHHHHhh----ccCCcC----------cEEEEEEeCCCccc--chhHHHH
Confidence 997543210 0 0 000011 11111 122221 35777889999976 4588899
Q ss_pred HHHHHHhhccCCCCCCCC----------CcEEEEEeCCCCcCC
Q 003878 729 LATMQYVLCTSLENSPQT----------NPIIGRIERKAGHGV 761 (789)
Q Consensus 729 ~~~L~~~~~~~~~~~~~~----------~~~~l~~~~~~gH~~ 761 (789)
+++|++. | .++++.+++++||.+
T Consensus 240 ~~~L~~~----------g~~~~~~~~~~~~~~~~~~~g~gH~~ 272 (297)
T 1gkl_A 240 IEAMKAL----------PHFDYTSDFSKGNFYFLVAPGATHWW 272 (297)
T ss_dssp HHHHHTS----------TTCCBBSCTTTCCEEEEEETTCCSSH
T ss_pred HHHHHHc----------CCccccccccCCceEEEECCCCCcCH
Confidence 9999987 5 589999999999974
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-15 Score=152.31 Aligned_cols=184 Identities=13% Similarity=0.050 Sum_probs=134.7
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEE--eecCCCCCChhHHhccc-ccCC----cchHHHHHHHHHH
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIA--NIRGGGEYGEEWHKGGA-LAKK----QNCFDDFISASEY 608 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~--~~RG~g~~g~~~~~~~~-~~~~----~~~~~D~~~~~~~ 608 (789)
++.|+||++||..+... .|. .....|. .||.|+++ +.||.|... |..... .... .....|+.+.+++
T Consensus 36 ~~~~~vv~~HG~~~~~~--~~~-~~~~~l~-~g~~v~~~~~d~~g~g~s~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 109 (226)
T 2h1i_A 36 TSKPVLLLLHGTGGNEL--DLL-PLAEIVD-SEASVLSVRGNVLENGMPR--FFRRLAEGIFDEEDLIFRTKELNEFLDE 109 (226)
T ss_dssp TTSCEEEEECCTTCCTT--TTH-HHHHHHH-TTSCEEEECCSEEETTEEE--SSCEEETTEECHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCCCChh--HHH-HHHHHhc-cCceEEEecCcccCCcchh--hccccCccCcChhhHHHHHHHHHHHHHH
Confidence 46799999999875532 343 3456777 59999999 888866421 111100 0011 1223456667777
Q ss_pred HHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCc
Q 003878 609 LISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSP 688 (789)
Q Consensus 609 L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP 688 (789)
+.++..+++++++++|+|+||.+++.++.++|++++++|+..|..+...
T Consensus 110 ~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~------------------------------- 158 (226)
T 2h1i_A 110 AAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG------------------------------- 158 (226)
T ss_dssp HHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSS-------------------------------
T ss_pred HHhhcCCCcccEEEEEEChHHHHHHHHHHhChhhhCEEEEeCCCCCcCc-------------------------------
Confidence 7777667889999999999999999999999999999999998754210
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhH
Q 003878 689 LHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKM 768 (789)
Q Consensus 689 ~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~ 768 (789)
...... ..+|+|+++|++|..+++..+.++++.++.. +.++++ +++++||.+.
T Consensus 159 ~~~~~~----------~~~p~l~~~G~~D~~~~~~~~~~~~~~l~~~----------~~~~~~-~~~~~gH~~~------ 211 (226)
T 2h1i_A 159 MQLANL----------AGKSVFIAAGTNDPICSSAESEELKVLLENA----------NANVTM-HWENRGHQLT------ 211 (226)
T ss_dssp CCCCCC----------TTCEEEEEEESSCSSSCHHHHHHHHHHHHTT----------TCEEEE-EEESSTTSCC------
T ss_pred cccccc----------cCCcEEEEeCCCCCcCCHHHHHHHHHHHHhc----------CCeEEE-EeCCCCCCCC------
Confidence 001111 2579999999999999999999999999876 778888 9999999983
Q ss_pred HHHHHHHHHHHHHHh
Q 003878 769 IDEAADRYGFMAKML 783 (789)
Q Consensus 769 ~~~~~~~~~fl~~~l 783 (789)
.+....+.+||.++|
T Consensus 212 ~~~~~~~~~~l~~~l 226 (226)
T 2h1i_A 212 MGEVEKAKEWYDKAF 226 (226)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 244567888998764
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-16 Score=175.81 Aligned_cols=149 Identities=11% Similarity=0.017 Sum_probs=110.8
Q ss_pred CCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC------------CCCC---HHHHHHHHcCC
Q 003878 504 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT------------PSFS---VSRTILMRHLG 568 (789)
Q Consensus 504 ~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~------------~~~~---~~~~~~l~~~G 568 (789)
..+..+.+.+++.+| .+|+++++.|++. .++.|+||++||..+.... ..|. ..+...|+++|
T Consensus 83 ~g~~~e~v~~~~~~g-~~l~~~l~~P~~~--~~~~P~Vl~~HG~g~~~~~~~~~~~~~~~~~~~y~~~~~~~a~~la~~G 159 (391)
T 3g8y_A 83 EGYILEKWEFYPFPK-SVSTFLVLKPEHL--KGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKEG 159 (391)
T ss_dssp TTEEEEEEEECCSTT-CCEEEEEEEETTC--CSCEEEEEEECCTTCCHHHHTTCCCSSGGGCCCTTSTTTCHHHHHHTTT
T ss_pred CCEEEEEEEEEcCCC-CEEEEEEEeCCCC--CCCCCEEEEeCCCCCCchhhccccccccccchhhcchHHHHHHHHHHCC
Confidence 357788899999999 9999999999864 4789999999997554320 0111 02345666799
Q ss_pred eEEEEEeecCCCCCChhHHhcc--------c----ccCCc----chHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHH
Q 003878 569 AVFCIANIRGGGEYGEEWHKGG--------A----LAKKQ----NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLV 632 (789)
Q Consensus 569 ~~v~~~~~RG~g~~g~~~~~~~--------~----~~~~~----~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~ 632 (789)
|+|+++|+||.|+.+..-.... . ...+. ....|+.+++++|.++..+|++||+|+|+|+||+++
T Consensus 160 ~~Vl~~D~rg~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~a~d~l~~~~~vd~~rI~v~G~S~GG~~a 239 (391)
T 3g8y_A 160 YVAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPM 239 (391)
T ss_dssp CEEEECCCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEEEEGGGHHHH
T ss_pred CEEEEecCCCccccCCcccccccccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEChhHHHH
Confidence 9999999999887653211000 0 00011 123799999999999999999999999999999999
Q ss_pred HHHHHhCCCceeEEEecCCccccc
Q 003878 633 GACINQRPDLFGCALAHVGVMDML 656 (789)
Q Consensus 633 ~~~~~~~pd~f~a~v~~~p~~d~~ 656 (789)
+.++.. +++++|+|+..++.++.
T Consensus 240 l~~a~~-~~~i~a~v~~~~~~~~~ 262 (391)
T 3g8y_A 240 MVLGVL-DKDIYAFVYNDFLCQTQ 262 (391)
T ss_dssp HHHHHH-CTTCCEEEEESCBCCHH
T ss_pred HHHHHc-CCceeEEEEccCCCCcc
Confidence 998887 56789998888777663
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.67 E-value=7.3e-14 Score=155.50 Aligned_cols=206 Identities=14% Similarity=0.142 Sum_probs=144.6
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...++|||||+.|+|...+. ....|+++++.++.. ..+... ......++|||||++|++
T Consensus 181 v~~~~~Spdg~~la~~s~~~----------------~~~~i~~~d~~tg~~--~~l~~~---~~~~~~~~~spdg~~la~ 239 (415)
T 2hqs_A 181 LMSPAWSPDGSKLAYVTFES----------------GRSALVIQTLANGAV--RQVASF---PRHNGAPAFSPDGSKLAF 239 (415)
T ss_dssp EEEEEECTTSSEEEEEECTT----------------SSCEEEEEETTTCCE--EEEECC---SSCEEEEEECTTSSEEEE
T ss_pred ceeeEEcCCCCEEEEEEecC----------------CCcEEEEEECCCCcE--EEeecC---CCcccCEEEcCCCCEEEE
Confidence 47899999999999987532 235799999987643 233322 234568999999999998
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
...... ...||++|+.++. ...+..... .....|+|||+.|++.++.+ ...+|+.+|+.+++
T Consensus 240 ~~~~~g--~~~i~~~d~~~~~--------------~~~l~~~~~~~~~~~~spdg~~l~~~s~~~-g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 240 ALSKTG--SLNLYVMDLASGQ--------------IRQVTDGRSNNTEPTWFPDSQNLAFTSDQA-GRPQVYKVNINGGA 302 (415)
T ss_dssp EECTTS--SCEEEEEETTTCC--------------EEECCCCSSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTSSC
T ss_pred EEecCC--CceEEEEECCCCC--------------EEeCcCCCCcccceEECCCCCEEEEEECCC-CCcEEEEEECCCCC
Confidence 775433 5679999998752 223332221 12356999999999988754 35689999998876
Q ss_pred CeEEeccCCCCceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCC
Q 003878 396 DWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLI 474 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~ 474 (789)
.+.+..+. ..+..+.|++++ .|++....++...|++||+++|+. +.+.... .+..++++||++.+++.... ..
T Consensus 303 -~~~l~~~~--~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~-~~ 376 (415)
T 2hqs_A 303 -PQRITWEG--SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQ-GM 376 (415)
T ss_dssp -CEECCCSS--SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEE-TT
T ss_pred -EEEEecCC--CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcC-CC
Confidence 45554443 456778898864 455656666667999999997776 5555443 56678899999988765532 33
Q ss_pred CcEEEEEECCCC
Q 003878 475 PGIVYQCNLKTE 486 (789)
Q Consensus 475 P~~ly~~dl~tg 486 (789)
...+|.+|+.++
T Consensus 377 ~~~l~~~d~~g~ 388 (415)
T 2hqs_A 377 GSVLNLVSTDGR 388 (415)
T ss_dssp EEEEEEEETTSC
T ss_pred ccEEEEEECCCC
Confidence 558999998766
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-16 Score=162.64 Aligned_cols=213 Identities=15% Similarity=0.131 Sum_probs=141.1
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
+.|+||++||..+.... |.. ....|.++||.|+++|+||.|......... .-....+|+.++++++..+
T Consensus 39 ~~~~vv~~HG~~~~~~~--~~~-~~~~l~~~G~~v~~~d~~G~G~s~~~~~~~----~~~~~~~d~~~~i~~l~~~---- 107 (270)
T 3rm3_A 39 GPVGVLLVHGFTGTPHS--MRP-LAEAYAKAGYTVCLPRLKGHGTHYEDMERT----TFHDWVASVEEGYGWLKQR---- 107 (270)
T ss_dssp SSEEEEEECCTTCCGGG--THH-HHHHHHHTTCEEEECCCTTCSSCHHHHHTC----CHHHHHHHHHHHHHHHHTT----
T ss_pred CCeEEEEECCCCCChhH--HHH-HHHHHHHCCCEEEEeCCCCCCCCccccccC----CHHHHHHHHHHHHHHHHhh----
Confidence 45999999997665433 443 445566589999999999988654322211 1122357888888888765
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccc----cCCccchhhcCCC-------------CcHHH
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKF----TIGHAWVSDFGCS-------------EEEEE 679 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~----~~~~~~~~e~g~p-------------~~~~~ 679 (789)
.++++++|+|+||.+++.++.++|+ ++++|+..|..++...... .....|...++.. .....
T Consensus 108 ~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (270)
T 3rm3_A 108 CQTIFVTGLSMGGTLTLYLAEHHPD-ICGIVPINAAVDIPAIAAGMTGGGELPRYLDSIGSDLKNPDVKELAYEKTPTAS 186 (270)
T ss_dssp CSEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCCHHHHHHSCC---CCSEEECCCCCCSCTTCCCCCCSEEEHHH
T ss_pred CCcEEEEEEcHhHHHHHHHHHhCCC-ccEEEEEcceecccccccchhcchhHHHHHHHhCccccccchHhhcccccChhH
Confidence 5799999999999999999999999 9999999987765432110 0001111111110 00111
Q ss_pred HHHHHhc--CcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCC
Q 003878 680 FYWLIKY--SPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKA 757 (789)
Q Consensus 680 ~~~l~~~--sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~ 757 (789)
+..+... .....+.+. .+|+|+++|++|..||+..+.++++++. +.++++.+++++
T Consensus 187 ~~~~~~~~~~~~~~~~~~----------~~P~lii~G~~D~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 244 (270)
T 3rm3_A 187 LLQLARLMAQTKAKLDRI----------VCPALIFVSDEDHVVPPGNADIIFQGIS------------STEKEIVRLRNS 244 (270)
T ss_dssp HHHHHHHHHHHHHTGGGC----------CSCEEEEEETTCSSSCTTHHHHHHHHSC------------CSSEEEEEESSC
T ss_pred HHHHHHHHHHHHhhhhhc----------CCCEEEEECCCCcccCHHHHHHHHHhcC------------CCcceEEEeCCC
Confidence 1111110 111233333 6899999999999999999988887765 346789999999
Q ss_pred CcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 758 GHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 758 gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
||.+..... ..+....+.+||.++.|
T Consensus 245 gH~~~~~~~-~~~~~~~i~~fl~~~~~ 270 (270)
T 3rm3_A 245 YHVATLDYD-QPMIIERSLEFFAKHAG 270 (270)
T ss_dssp CSCGGGSTT-HHHHHHHHHHHHHHHC-
T ss_pred CcccccCcc-HHHHHHHHHHHHHhcCC
Confidence 999765433 24567789999988753
|
| >4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.1e-16 Score=155.13 Aligned_cols=188 Identities=13% Similarity=-0.017 Sum_probs=119.3
Q ss_pred cEEEEEcCCCCccCCCCCC-HHHHHHHHcC--CeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 539 PCLLYGYGGFNISVTPSFS-VSRTILMRHL--GAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~-~~~~~~l~~~--G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
|+|||+||-.++.. ++. .....++.++ |+.|+++|++|.|+ |..+.++.++.. .
T Consensus 3 ptIl~lHGf~ss~~--s~k~~~l~~~~~~~~~~~~v~~pdl~~~g~-------------------~~~~~l~~~~~~--~ 59 (202)
T 4fle_A 3 STLLYIHGFNSSPS--SAKATTFKSWLQQHHPHIEMQIPQLPPYPA-------------------EAAEMLESIVMD--K 59 (202)
T ss_dssp CEEEEECCTTCCTT--CHHHHHHHHHHHHHCTTSEEECCCCCSSHH-------------------HHHHHHHHHHHH--H
T ss_pred cEEEEeCCCCCCCC--ccHHHHHHHHHHHcCCCcEEEEeCCCCCHH-------------------HHHHHHHHHHHh--c
Confidence 89999999433221 221 2234555544 58999999998642 333444455443 2
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCC--CcHHHHHHHHhcCcccCCC
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCS--EEEEEFYWLIKYSPLHNVR 693 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p--~~~~~~~~l~~~sP~~~v~ 693 (789)
.+++|+|+|+|+||.+++.++.++|+...+++...+..+......... .....+.+ .......... +....+.
T Consensus 60 ~~~~i~l~G~SmGG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 134 (202)
T 4fle_A 60 AGQSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAVRPFELLSDYLGEN---QNPYTGQKYVLESRHIYDLK--AMQIEKL 134 (202)
T ss_dssp TTSCEEEEEETHHHHHHHHHHHHTTCCEEEESCCSSHHHHGGGGCEEE---ECTTTCCEEEECHHHHHHHH--TTCCSSC
T ss_pred CCCcEEEEEEChhhHHHHHHHHHhcccchheeeccchHHHHHHhhhhh---ccccccccccchHHHHHHHH--hhhhhhh
Confidence 457999999999999999999999998888877776555433221100 00011111 1122222222 3334444
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHH
Q 003878 694 RPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAA 773 (789)
Q Consensus 694 ~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~ 773 (789)
+. .+|+|++||++|.+||++++.+++. . +++.+++++||.+.... +...
T Consensus 135 ~~----------~~P~LiihG~~D~~Vp~~~s~~l~~---~--------------~~l~i~~g~~H~~~~~~----~~~~ 183 (202)
T 4fle_A 135 ES----------PDLLWLLQQTGDEVLDYRQAVAYYT---P--------------CRQTVESGGNHAFVGFD----HYFS 183 (202)
T ss_dssp SC----------GGGEEEEEETTCSSSCHHHHHHHTT---T--------------SEEEEESSCCTTCTTGG----GGHH
T ss_pred cc----------CceEEEEEeCCCCCCCHHHHHHHhh---C--------------CEEEEECCCCcCCCCHH----HHHH
Confidence 43 6899999999999999999887752 2 26888999999875432 3456
Q ss_pred HHHHHHHHHhCC
Q 003878 774 DRYGFMAKMLGA 785 (789)
Q Consensus 774 ~~~~fl~~~l~~ 785 (789)
.+.+||.-..|+
T Consensus 184 ~I~~FL~~a~~l 195 (202)
T 4fle_A 184 PIVTFLGLATAL 195 (202)
T ss_dssp HHHHHHTCCCCT
T ss_pred HHHHHHhhhhhc
Confidence 788898654444
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-15 Score=164.36 Aligned_cols=148 Identities=14% Similarity=0.089 Sum_probs=101.4
Q ss_pred CCcEEEEEEecCCCceEEEEEEEecCCCC--CCCCccEEEEEcCCCCccCCCCCC---HHHHHHHHcCCeEEEEEeecCC
Q 003878 505 EFHVHQVFVPSKDGSTKIPMFIVSKKNIK--LDGSHPCLLYGYGGFNISVTPSFS---VSRTILMRHLGAVFCIANIRGG 579 (789)
Q Consensus 505 ~~~~~~~~~~s~dg~~~i~~~l~~p~~~~--~~~~~P~ll~~hGg~~~~~~~~~~---~~~~~~l~~~G~~v~~~~~RG~ 579 (789)
.+..+...+++.|| .++.++.+.|.... +.++.|+||++||..+........ ..+...|.++||.|+++|+||.
T Consensus 24 ~~~~~~~~~~~~dG-~~l~~~~~~~~~~~~~~~~~~~~vvl~HG~~~~~~~~~~~~~~~~~a~~l~~~G~~vi~~D~~G~ 102 (377)
T 1k8q_A 24 GYPAEEYEVVTEDG-YILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGN 102 (377)
T ss_dssp TCCCEEEEEECTTS-EEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCTTS
T ss_pred CCCceEEEeEcCCC-CEEEEEEecCCCCCccccCCCCeEEEECCCCCchhhhhcCCCcccHHHHHHHCCCCEEEecCCCC
Confidence 45567788899999 99999888665321 124679999999987665432211 1123355558999999999998
Q ss_pred CCCChhHHhcccc-cCCcch----HH-HHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC---ceeEEEecC
Q 003878 580 GEYGEEWHKGGAL-AKKQNC----FD-DFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD---LFGCALAHV 650 (789)
Q Consensus 580 g~~g~~~~~~~~~-~~~~~~----~~-D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd---~f~a~v~~~ 650 (789)
|.....-...... .....+ .+ |+.++++++.+. .+.++++++|||+||.+++.++.++|+ +++++|+.+
T Consensus 103 G~S~~~~~~~~~~~~~~~~~~~~~~~~D~~~~i~~~~~~--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~v~~lvl~~ 180 (377)
T 1k8q_A 103 TWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKK--TGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALA 180 (377)
T ss_dssp TTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHH--HCCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEEEEES
T ss_pred CCCCCCCCCCCCcccccCccHHHHHhhhHHHHHHHHHHh--cCcCceEEEEechhhHHHHHHHhcCchhhhhhhEEEEeC
Confidence 7643210000000 000112 23 777788888765 234689999999999999999999998 899999988
Q ss_pred Ccccc
Q 003878 651 GVMDM 655 (789)
Q Consensus 651 p~~d~ 655 (789)
|...+
T Consensus 181 ~~~~~ 185 (377)
T 1k8q_A 181 PVATV 185 (377)
T ss_dssp CCSCC
T ss_pred Cchhc
Confidence 86543
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.5e-17 Score=178.14 Aligned_cols=148 Identities=7% Similarity=-0.015 Sum_probs=110.2
Q ss_pred CCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccC------------CCCCC---HHHHHHHHcCC
Q 003878 504 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV------------TPSFS---VSRTILMRHLG 568 (789)
Q Consensus 504 ~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~------------~~~~~---~~~~~~l~~~G 568 (789)
..+..+.+.+++.+| .+|+++++.|++. .++.|+||++||+.+... ...|. ..+...|+++|
T Consensus 88 ~g~~~e~v~~~~~~g-~~l~~~l~~P~~~--~~~~P~Vv~~HG~g~~~~~~~~~~g~~~~~~~~y~~~~~~~a~~la~~G 164 (398)
T 3nuz_A 88 EGYRLEKWEFYPLPK-CVSTFLVLIPDNI--NKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFVKEG 164 (398)
T ss_dssp SSEEEEEEEECCSTT-BCEEEEEEEESSC--CSCEEEEEEECCTTCCHHHHHTCCCSSSTTCCSTTCTTTCHHHHHHTTT
T ss_pred CCEEEEEEEEEcCCC-cEEEEEEEeCCCC--CCCccEEEEEcCCCCCcccccccccccccccccccchHHHHHHHHHHCC
Confidence 357788999999999 9999999999874 478999999999865422 11221 12456667799
Q ss_pred eEEEEEeecCCCCCChhHHhcc----------------cccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHH
Q 003878 569 AVFCIANIRGGGEYGEEWHKGG----------------ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLV 632 (789)
Q Consensus 569 ~~v~~~~~RG~g~~g~~~~~~~----------------~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~ 632 (789)
|+|+++|+||.|+.+....... ..........|+.+++++|.+++.+|++||+|+|+|+||+++
T Consensus 165 y~Vl~~D~rG~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~ald~l~~~~~vd~~rI~v~G~S~GG~~a 244 (398)
T 3nuz_A 165 YIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPM 244 (398)
T ss_dssp CEEEEECCTTSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEEGGGHHHH
T ss_pred CEEEEecCCCCCccccccccccccccchhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEECHhHHHH
Confidence 9999999999887653321100 000111234799999999999999999999999999999999
Q ss_pred HHHHHhCCCceeEEEecCCcccc
Q 003878 633 GACINQRPDLFGCALAHVGVMDM 655 (789)
Q Consensus 633 ~~~~~~~pd~f~a~v~~~p~~d~ 655 (789)
+.++... ++++|+|+.+++..+
T Consensus 245 ~~~aa~~-~~i~a~v~~~~~~~~ 266 (398)
T 3nuz_A 245 MVLGTLD-TSIYAFVYNDFLCQT 266 (398)
T ss_dssp HHHHHHC-TTCCEEEEESCBCCH
T ss_pred HHHHhcC-CcEEEEEEecccccc
Confidence 9988884 578888886665543
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=99.65 E-value=6.5e-16 Score=179.17 Aligned_cols=139 Identities=15% Similarity=0.100 Sum_probs=108.2
Q ss_pred EEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccC-CCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhH
Q 003878 508 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV-TPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 586 (789)
Q Consensus 508 ~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~-~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~ 586 (789)
.+.+.+++.|| .+|.+.++.|++ .++.|+||+.||...... ...|.......+.++||+|+.+|+||.|+.+..+
T Consensus 9 ~~~v~i~~~DG-~~L~~~~~~P~~---~~~~P~vv~~~~~g~~~~~~~~y~~~~~~~la~~Gy~vv~~D~RG~G~S~g~~ 84 (587)
T 3i2k_A 9 ASNVMVPMRDG-VRLAVDLYRPDA---DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEGEF 84 (587)
T ss_dssp EEEEEEECTTS-CEEEEEEEEECC---SSCEEEEEEEESSCTTCHHHHHTTTCCTHHHHHTTCEEEEEECTTSTTCCSCC
T ss_pred EEEEEEECCCC-CEEEEEEEECCC---CCCeeEEEEECCcCCCccccccchhhHHHHHHHCCCEEEEEcCCCCCCCCCcc
Confidence 46689999999 999999999986 357899999876322211 0012111103455599999999999998876544
Q ss_pred HhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc-ccccc
Q 003878 587 HKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV-MDMLR 657 (789)
Q Consensus 587 ~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~-~d~~~ 657 (789)
.. .....+|+.++++||.++.+.+ .+|+++|+|+||+++++++.++|+.++|+|+.++. .|+..
T Consensus 85 ~~------~~~~~~D~~~~i~~l~~~~~~~-~~v~l~G~S~GG~~a~~~a~~~~~~l~a~v~~~~~~~d~~~ 149 (587)
T 3i2k_A 85 VP------HVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRA 149 (587)
T ss_dssp CT------TTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCC
T ss_pred cc------ccchhHHHHHHHHHHHhCCCCC-CeEEEEeeCHHHHHHHHHHhhCCCccEEEEEeCCccccccc
Confidence 32 2357899999999999987766 79999999999999999999999999999999998 87654
|
| >4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=156.52 Aligned_cols=215 Identities=13% Similarity=0.110 Sum_probs=134.9
Q ss_pred CcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHH--cCCeEEEEEeecCC----
Q 003878 506 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMR--HLGAVFCIANIRGG---- 579 (789)
Q Consensus 506 ~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~--~~G~~v~~~~~RG~---- 579 (789)
+..+.+.+.+ ..+...++.|+. ...++||++||..+...+ +.. ....+. -.++.+++|+-.-.
T Consensus 13 ~~~~~~~~~~----~~l~y~ii~P~~----~~~~~VI~LHG~G~~~~d--l~~-l~~~l~~~~~~~~~i~P~Ap~~~~~~ 81 (246)
T 4f21_A 13 LGTENLYFQS----NAMNYELMEPAK----QARFCVIWLHGLGADGHD--FVD-IVNYFDVSLDEIRFIFPHADIIPVTI 81 (246)
T ss_dssp --------------CCCCEEEECCSS----CCCEEEEEEEC--CCCCC--GGG-GGGGCCSCCTTEEEEEECGGGSCTTT
T ss_pred cccceEEEec----CCcCceEeCCCC----cCCeEEEEEcCCCCCHHH--HHH-HHHHhhhcCCCeEEEeCCCCcccccc
Confidence 3445555654 346677888874 345789999995433222 221 112222 13678888875321
Q ss_pred --CCCChhHHhcccccC-------CcchHHHHHHHHHHH----HHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEE
Q 003878 580 --GEYGEEWHKGGALAK-------KQNCFDDFISASEYL----ISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCA 646 (789)
Q Consensus 580 --g~~g~~~~~~~~~~~-------~~~~~~D~~~~~~~L----~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~ 646 (789)
+..|..|+....... ....+...++.++.+ .+. .++++||++.|+|+||.+++.++.++|+.|+++
T Consensus 82 ~~~~~~~~Wf~~~~~~~~~~~~~~d~~~i~~~~~~i~~li~~~~~~-gi~~~ri~l~GfSqGg~~a~~~~~~~~~~~a~~ 160 (246)
T 4f21_A 82 NMGMQMRAWYDIKSLDANSLNRVVDVEGINSSIAKVNKLIDSQVNQ-GIASENIILAGFSQGGIIATYTAITSQRKLGGI 160 (246)
T ss_dssp HHHHHHHSCTTCCCC---CGGGGSCCC-CHHHHHHHHHHHHHHHHC--CCGGGEEEEEETTTTHHHHHHHTTCSSCCCEE
T ss_pred CCCCCcccccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHc-CCChhcEEEEEeCchHHHHHHHHHhCccccccc
Confidence 112445654322111 111223333333333 344 479999999999999999999999999999999
Q ss_pred EecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHH
Q 003878 647 LAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSL 726 (789)
Q Consensus 647 v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~ 726 (789)
|+.++.+.... .+- ...+ .. ...+|+|++||++|++||++.+.
T Consensus 161 i~~sG~lp~~~------------~~~-----------~~~~---~~-----------~~~~Pvl~~HG~~D~vVp~~~~~ 203 (246)
T 4f21_A 161 MALSTYLPAWD------------NFK-----------GKIT---SI-----------NKGLPILVCHGTDDQVLPEVLGH 203 (246)
T ss_dssp EEESCCCTTHH------------HHS-----------TTCC---GG-----------GTTCCEEEEEETTCSSSCHHHHH
T ss_pred eehhhccCccc------------ccc-----------cccc---cc-----------ccCCchhhcccCCCCccCHHHHH
Confidence 99888543111 000 0000 00 12579999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 727 KLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 727 ~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
++++.|++. |.+++++.|++.||+.. .+++.++.+||.+.|++
T Consensus 204 ~~~~~L~~~----------g~~v~~~~y~g~gH~i~------~~~l~~~~~fL~k~l~l 246 (246)
T 4f21_A 204 DLSDKLKVS----------GFANEYKHYVGMQHSVC------MEEIKDISNFIAKTFKI 246 (246)
T ss_dssp HHHHHHHTT----------TCCEEEEEESSCCSSCC------HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHC----------CCCeEEEEECCCCCccC------HHHHHHHHHHHHHHhCC
Confidence 999999988 89999999999999874 24567889999999874
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.2e-14 Score=169.14 Aligned_cols=297 Identities=11% Similarity=0.008 Sum_probs=181.9
Q ss_pred EEEeEEeCCCCcEEEEEEe-cCCceEEEEEEEEcCCCceecccccccccccccCcccee---------------eeeecc
Q 003878 133 ALIKVSVSEDAKYLAYALS-YSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFF---------------HLTISL 196 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~-~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~ 196 (789)
.+..++|||||++|||+.. .++....+|++||+++|+..... ..... .....++. .-..++
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLV-DSKVV--LPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEE-CGGGT--C--------------------CCEESCCC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEcc-chhhc--ccccccccchhhhhhhhhhhccccCccee
Confidence 3678899999999999887 44455679999999999654311 11000 00000000 002355
Q ss_pred ccccccccccccccceeeEEEeeeccccceeeeeeecc------------cccceEEEEeCCcEEEEEEccCCCCCCCCC
Q 003878 197 LNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQ------------FKFSSIAWTHDSKGFFYSRYPAPKEGKDMD 264 (789)
Q Consensus 197 ~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~------------~~~~~~~wspDg~~i~y~~~~~~~~~~~~~ 264 (789)
.+.|+++ +++|.++ +...+|.+... -....++|||||+.|+|...
T Consensus 115 ~~SpDg~-----------~l~~~~~--~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~---------- 171 (741)
T 2ecf_A 115 QWSPDAQ-----------RLLFPLG--GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG---------- 171 (741)
T ss_dssp EECTTSS-----------EEEEEET--TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET----------
T ss_pred EECCCCC-----------EEEEEeC--CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC----------
Confidence 6779997 4455544 33334433211 12357899999999999852
Q ss_pred CCccccCCcccEEEEEECCCCCCCcEEEEecCCCCe--------------eEEEEEEecCCcEEEEEEEcCCC-------
Q 003878 265 AGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPK--------------YIFSGHVTEDGQYLVMCIEENCD------- 323 (789)
Q Consensus 265 ~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~--------------~~~~~~~SpDG~~l~~~~~~~~~------- 323 (789)
.+|+++++.++.. ..+........ ...++.|||||++|++...+...
T Consensus 172 ----------~~i~~~d~~~g~~--~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~ 239 (741)
T 2ecf_A 172 ----------RNLWVIDLASGRQ--MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRY 239 (741)
T ss_dssp ----------TEEEEEETTTTEE--EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEE
T ss_pred ----------CcEEEEecCCCCE--EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecC
Confidence 2589999876432 12222111100 01358999999999998765321
Q ss_pred ---------------------CceEEEEEECCC-CCCCcccccccCCCCccEeeecc--c--cceeEEEecCCCEEEEEE
Q 003878 324 ---------------------PVNKVYYCDLSA-LPEGLEGFKKRDGLLPFVKLIDG--F--DAQYEVIANDDTVFTFLT 377 (789)
Q Consensus 324 ---------------------~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~l~~~--~--~~~~~~~s~dG~~l~~~t 377 (789)
....||++|+++ +. ...+... . ......| |||+.|++..
T Consensus 240 ~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~--------------~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~ 304 (741)
T 2ecf_A 240 EVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ--------------TQWIDLGKEQDIYLARVNW-RDPQHLSFQR 304 (741)
T ss_dssp EECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC--------------CEEECCCSCSSEEEEEEEE-EETTEEEEEE
T ss_pred CCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc--------------eEEecCCCCcceEEEEEEe-CCCCEEEEEE
Confidence 123799999877 53 1111111 1 1122458 9999999876
Q ss_pred C-CCCCCceEEEEECCCCCCeEEeccCCCCc---eeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeE
Q 003878 378 N-KDAPKYKIIRVDLKEPNDWFEVIPEAERD---VLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSV 453 (789)
Q Consensus 378 n-~~~~~~~L~~~dl~~~~~~~~l~~~~~~~---~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v 453 (789)
. .......|+++|+++++ .+.++...... .+..+.|++++++++....++..+|+.++++ |+ .+.++.....+
T Consensus 305 ~~~~~~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~-~~-~~~l~~~~~~v 381 (741)
T 2ecf_A 305 QSRDQKKLDLVEVTLASNQ-QRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK-GK-AAALTHGNWSV 381 (741)
T ss_dssp EETTSSEEEEEEEETTTCC-EEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS-SC-EEESCCSSSCE
T ss_pred ecccCCeEEEEEEECCCCc-eEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC-CC-eeeeeecceEE
Confidence 4 44456899999999886 45554432222 2357888887778888888887899999987 44 57777665556
Q ss_pred EEe-ecccCCcEEEEEEcCCCCC--cEEEEEECCCC
Q 003878 454 NAI-SARREDSVVFISFTSFLIP--GIVYQCNLKTE 486 (789)
Q Consensus 454 ~~~-s~s~d~~~l~~~~ss~~~P--~~ly~~dl~tg 486 (789)
..+ .++++++.++++.+. ..+ ..+|.++..++
T Consensus 382 ~~~~~~s~dg~~l~~~~~~-~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 382 DELLAVDEKAGLAYFRAGI-ESARESQIYAVPLQGG 416 (741)
T ss_dssp EEEEEEETTTTEEEEEECS-SCTTCBEEEEEETTCC
T ss_pred EeEeEEeCCCCEEEEEEeC-CCCceEEEEEEEcCCC
Confidence 555 589999988776543 333 34666665443
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.63 E-value=9.2e-15 Score=155.69 Aligned_cols=237 Identities=14% Similarity=0.086 Sum_probs=143.1
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCC-CCCChhHH
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGG-GEYGEEWH 587 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~-g~~g~~~~ 587 (789)
+...+++.|| .+|.++.+.|++. ..++.|+||++||..+... .|.. ....|.++||.|+.+|+||+ |......
T Consensus 8 ~~~~i~~~dG-~~l~~~~~~p~~~-~~~~~~~VvllHG~g~~~~--~~~~-~~~~L~~~G~~Vi~~D~rGh~G~S~~~~- 81 (305)
T 1tht_A 8 IAHVLRVNNG-QELHVWETPPKEN-VPFKNNTILIASGFARRMD--HFAG-LAEYLSTNGFHVFRYDSLHHVGLSSGSI- 81 (305)
T ss_dssp EEEEEEETTT-EEEEEEEECCCTT-SCCCSCEEEEECTTCGGGG--GGHH-HHHHHHTTTCCEEEECCCBCC--------
T ss_pred eEEEEEcCCC-CEEEEEEecCccc-CCCCCCEEEEecCCccCch--HHHH-HHHHHHHCCCEEEEeeCCCCCCCCCCcc-
Confidence 4556778899 9999988877642 1235689999999765432 3443 45566668999999999997 6432111
Q ss_pred hcccccCCc-chHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc----c-
Q 003878 588 KGGALAKKQ-NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK----F- 661 (789)
Q Consensus 588 ~~~~~~~~~-~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~----~- 661 (789)
..... .-.+|+.+++++|...+ .++++++|+|+||.+++.++.+ | +++++|+..|+.++..... .
T Consensus 82 ----~~~~~~~~~~D~~~~~~~l~~~~---~~~~~lvGhSmGG~iA~~~A~~-~-~v~~lvl~~~~~~~~~~~~~~~~~~ 152 (305)
T 1tht_A 82 ----DEFTMTTGKNSLCTVYHWLQTKG---TQNIGLIAASLSARVAYEVISD-L-ELSFLITAVGVVNLRDTLEKALGFD 152 (305)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHTT---CCCEEEEEETHHHHHHHHHTTT-S-CCSEEEEESCCSCHHHHHHHHHSSC
T ss_pred ----cceehHHHHHHHHHHHHHHHhCC---CCceEEEEECHHHHHHHHHhCc-c-CcCEEEEecCchhHHHHHHHHhhhh
Confidence 01111 12467888888887543 3689999999999999999888 7 7888888877654321100 0
Q ss_pred --cCCccchh---hc-CCCCcHHHH-HHHHhcC------cccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHH
Q 003878 662 --TIGHAWVS---DF-GCSEEEEEF-YWLIKYS------PLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKL 728 (789)
Q Consensus 662 --~~~~~~~~---e~-g~p~~~~~~-~~l~~~s------P~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~ 728 (789)
........ .+ +.......+ ....... +...+.++ ..|+|+++|++|..||+..+.++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~PvLii~G~~D~~vp~~~~~~l 222 (305)
T 1tht_A 153 YLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANT----------SVPLIAFTANNDDWVKQEEVYDM 222 (305)
T ss_dssp GGGSCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTC----------CSCEEEEEETTCTTSCHHHHHHH
T ss_pred hhhcchhhCcccccccccccCHHHHHHHHHhccccchhhHHHHHhhc----------CCCEEEEEeCCCCccCHHHHHHH
Confidence 00000000 00 000011111 1111110 11223444 67999999999999999988877
Q ss_pred HHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHH
Q 003878 729 LATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 729 ~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 782 (789)
++.+. ....++++++++||..........+.++.+..|....
T Consensus 223 ~~~i~------------~~~~~l~~i~~agH~~~e~p~~~~~fl~~~~~~~~~~ 264 (305)
T 1tht_A 223 LAHIR------------TGHCKLYSLLGSSHDLGENLVVLRNFYQSVTKAAIAM 264 (305)
T ss_dssp HTTCT------------TCCEEEEEETTCCSCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHhcC------------CCCcEEEEeCCCCCchhhCchHHHHHHHHHHHHHHHh
Confidence 65543 2246899999999997533333334455555555443
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-14 Score=157.76 Aligned_cols=260 Identities=11% Similarity=0.038 Sum_probs=161.5
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccccee
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFF 213 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 213 (789)
+..++|||||++|||+.+..|. .+|+++|+++++......... .
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~--~~l~~~d~~~~~~~~l~~~~~-----------------------~----------- 81 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGN--RNYYLLNLETQQAVQLTEGKG-----------------------D----------- 81 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSS--CEEEEEETTTTEEEECCCSSC-----------------------B-----------
T ss_pred eecCcCCCCCCEEEEEEecCCC--ceEEEEECCCCcEEEeecCCC-----------------------C-----------
Confidence 4567899999999999886553 478999999987543211110 0
Q ss_pred eEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEE
Q 003878 214 FFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCW 293 (789)
Q Consensus 214 ~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~ 293 (789)
....+.|||||+.|+|.... .+|+++++.++. ...++
T Consensus 82 ----------------------~~~~~~~spdg~~l~~~~~~-------------------~~l~~~d~~~~~--~~~~~ 118 (396)
T 3c5m_A 82 ----------------------NTFGGFISTDERAFFYVKNE-------------------LNLMKVDLETLE--EQVIY 118 (396)
T ss_dssp ----------------------CTTTCEECTTSSEEEEEETT-------------------TEEEEEETTTCC--EEEEE
T ss_pred ----------------------ccccceECCCCCEEEEEEcC-------------------CcEEEEECCCCC--cEEEE
Confidence 02348899999999998642 158999987653 33444
Q ss_pred ecCCCCeeEEE-------------------EEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEe
Q 003878 294 KDPEHPKYIFS-------------------GHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK 354 (789)
Q Consensus 294 ~~~~~~~~~~~-------------------~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 354 (789)
..+.. +... +.+||||+++++...........||++|++++. ...
T Consensus 119 ~~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~--------------~~~ 182 (396)
T 3c5m_A 119 TVDEE--WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE--------------LEV 182 (396)
T ss_dssp ECCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC--------------EEE
T ss_pred ecccc--cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc--------------EEe
Confidence 43321 1111 235666666554321011235789999998752 122
Q ss_pred eecc-ccceeEEEec-CCCEEEEEECCCC--CCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCC-EEEEEEEeCCe
Q 003878 355 LIDG-FDAQYEVIAN-DDTVFTFLTNKDA--PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVK 429 (789)
Q Consensus 355 l~~~-~~~~~~~~s~-dG~~l~~~tn~~~--~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~-~lv~~~~~~g~ 429 (789)
+... .......|+| ||+.|++.++... ...+|+.+++++++ ++.+..+.....+..+.|++++ .|++....++.
T Consensus 183 ~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 261 (396)
T 3c5m_A 183 IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQ 261 (396)
T ss_dssp EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTT
T ss_pred eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc-eeEeeccCCCccccceEECCCCCEEEEEecCCCC
Confidence 2221 1223356899 8888988876321 12689999998765 5666653323456778898864 46776666655
Q ss_pred EE--EEEEECCCCceeeecc-cCCeeEEEeeccc-CCcEEEEEEcC------------CCCCcEEEEEECCCCCceEEEe
Q 003878 430 YV--LQIRDLKNGSLLHQLP-IEIGSVNAISARR-EDSVVFISFTS------------FLIPGIVYQCNLKTETPEMKIF 493 (789)
Q Consensus 430 ~~--L~~~dl~tG~~~~~l~-~~~~~v~~~s~s~-d~~~l~~~~ss------------~~~P~~ly~~dl~tg~~~~~~l 493 (789)
.. |+++|+++|+. +.+. .+. .. +.+++ |++.+++..+. ......+|++|+.+++ .+.+
T Consensus 262 ~~~~l~~~d~~~g~~-~~l~~~~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~l 335 (396)
T 3c5m_A 262 TDRVIYKANPETLEN-EEVMVMPP--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS--AQKL 335 (396)
T ss_dssp CCEEEEEECTTTCCE-EEEEECCS--EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTB--CCEE
T ss_pred ccceEEEEECCCCCe-EEeeeCCC--CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCc--eEEc
Confidence 44 99999987765 3443 332 22 67788 99866654322 0123789999998885 4444
Q ss_pred ee
Q 003878 494 RE 495 (789)
Q Consensus 494 ~~ 495 (789)
..
T Consensus 336 ~~ 337 (396)
T 3c5m_A 336 CK 337 (396)
T ss_dssp EE
T ss_pred cC
Confidence 43
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=99.63 E-value=9.9e-15 Score=161.52 Aligned_cols=150 Identities=15% Similarity=0.100 Sum_probs=99.9
Q ss_pred CcEEEEEEecCC--C-ceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC---------CCCCHHHHHHHHcCCeEEEE
Q 003878 506 FHVHQVFVPSKD--G-STKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT---------PSFSVSRTILMRHLGAVFCI 573 (789)
Q Consensus 506 ~~~~~~~~~s~d--g-~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~---------~~~~~~~~~~l~~~G~~v~~ 573 (789)
+...++.|.+.+ | +..+.++++.|++....++.|+||++||+.+.... ..+... ...+.++||+|++
T Consensus 44 v~~~~i~y~t~~~~g~~~~~~g~l~~P~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~G~~V~~ 122 (397)
T 3h2g_A 44 VRVAEFTYATIGVEGEPATASGVLLIPGGERCSGPYPLLGWGHPTEALRAQEQAKEIRDAKGDDPL-VTRLASQGYVVVG 122 (397)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEEECTTCCSCEEEEEEECCCCCBTTCCHHHHHHHTTTCSHH-HHTTGGGTCEEEE
T ss_pred eEEEEEEEEecCCCCCeEEEEEEEEeCCCCCCCCCCcEEEEeCCCcCCCCcccccccccccchHHH-HHHHHHCCCEEEE
Confidence 345667776654 3 24688999999886556789999999998776443 224443 3444459999999
Q ss_pred EeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHH-hCC----C-ceeEE
Q 003878 574 ANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACIN-QRP----D-LFGCA 646 (789)
Q Consensus 574 ~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~-~~~d~~~i~i~G~S~GG~l~~~~~~-~~p----d-~f~a~ 646 (789)
+|+||.|..+...............+.|.+.++..+.++ ++.++++|+++|||+||.++++++. ..+ + .+.++
T Consensus 123 ~D~~G~G~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~~~~~~~ 202 (397)
T 3h2g_A 123 SDYLGLGKSNYAYHPYLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEFHLVAS 202 (397)
T ss_dssp ECCTTSTTCCCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTTSEEEEE
T ss_pred ecCCCCCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEECHHHHHHHHHHHHhhhhcCcCcceEEE
Confidence 999998865321111000001113455666666666554 6667889999999999999988762 222 2 57888
Q ss_pred EecCCccccc
Q 003878 647 LAHVGVMDML 656 (789)
Q Consensus 647 v~~~p~~d~~ 656 (789)
++..+..|+.
T Consensus 203 ~~~~~~~~l~ 212 (397)
T 3h2g_A 203 APISGPYALE 212 (397)
T ss_dssp EEESCCSSHH
T ss_pred ecccccccHH
Confidence 8887777764
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-14 Score=152.90 Aligned_cols=223 Identities=10% Similarity=0.032 Sum_probs=141.8
Q ss_pred cEEEEEEecCC-CceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHc-CCeEEEEEeecCCCCCC-
Q 003878 507 HVHQVFVPSKD-GSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRH-LGAVFCIANIRGGGEYG- 583 (789)
Q Consensus 507 ~~~~~~~~s~d-g~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~RG~g~~g- 583 (789)
..+.+.+.|.. | .++.++++.|++..+.+++|+|++.||+..... ........+.+ .+.+|+.++++++..+.
T Consensus 12 ~~~~~~~~S~~~~-~~~~~~vylP~~y~~~~~yPvly~l~G~~~~~~---~~~~~~~~l~~~~~~ivV~v~~~~~~~~~~ 87 (278)
T 2gzs_A 12 HFSATSFDSVDGT-RHYRVWTAVPNTTAPASGYPILYMLDGNAVMDR---LDDELLKQLSEKTPPVIVAVGYQTNLPFDL 87 (278)
T ss_dssp EEEEEEEECTTSS-CEEEEEEEEESSCCCTTCEEEEEESSHHHHHHH---CCHHHHHHHTTSCCCEEEEEEESSSSSCCH
T ss_pred ceEEEEEEcCCCC-ceEEEEEECCCCCCCCCCCCEEEEeeChhHHHH---HHHHHHHHhccCCCeEEEEEcCCCCCcCcc
Confidence 46777888876 7 899999999999776778998877777543211 11223333432 57888888888653221
Q ss_pred ----hhHHhcc-c-----------c-cCCcchHHHHHH--HHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCcee
Q 003878 584 ----EEWHKGG-A-----------L-AKKQNCFDDFIS--ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFG 644 (789)
Q Consensus 584 ----~~~~~~~-~-----------~-~~~~~~~~D~~~--~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~ 644 (789)
.++.... . . ..+...+.+++. .+.++.++.-+|++|++|+|+|+||++++.++.+ |++|+
T Consensus 88 ~~R~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~~~r~~i~G~S~GG~~a~~~~~~-p~~f~ 166 (278)
T 2gzs_A 88 NSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSYFR 166 (278)
T ss_dssp HHHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSSCS
T ss_pred cccccccCCCCccccccccccCcCCCcCCHHHHHHHHHHHHHHHHHHhccCCCCceEEEEECHHHHHHHHHHhC-ccccC
Confidence 1111100 0 0 011123344431 2233334444788999999999999999999999 99999
Q ss_pred EEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCC----
Q 003878 645 CALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRV---- 720 (789)
Q Consensus 645 a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V---- 720 (789)
++++.+|.+.+.. ......+.++.+. .. ..+|+++.+|+.|.++
T Consensus 167 ~~~~~s~~~~~~~-------------------~~~~~~~~~~~~~---~~----------~~~~i~l~~G~~d~~~~~~~ 214 (278)
T 2gzs_A 167 SYYSASPSLGRGY-------------------DALLSRVTAVEPL---QF----------CTKHLAIMEGSATQGDNRET 214 (278)
T ss_dssp EEEEESGGGSTTH-------------------HHHHHHHHTSCTT---TT----------TTCEEEEEECCC--------
T ss_pred eEEEeCcchhcCc-------------------chHHHHHHHhhcc---CC----------CCCcEEEEecCccccccccc
Confidence 9999998643210 0111122332211 01 2579999999999875
Q ss_pred ----CcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 721 ----VPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 721 ----~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
+..++.+++++|++. |.++++.++++++|+... +..+...+.||.+
T Consensus 215 ~~~~~~~~~~~~~~~L~~~----------g~~~~~~~~~g~~H~~~~-----~~~~~~~l~fl~~ 264 (278)
T 2gzs_A 215 HAVGVLSKIHTTLTILKDK----------GVNAVFWDFPNLGHGPMF-----NASFRQALLDISG 264 (278)
T ss_dssp ---CHHHHHHHHHHHHHHT----------TCCEEEEECTTCCHHHHH-----HHHHHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHHHHcC----------CCeeEEEEcCCCCccchh-----HHHHHHHHHHHhh
Confidence 478999999999998 999999999999997532 2333456777754
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.3e-15 Score=153.28 Aligned_cols=185 Identities=15% Similarity=0.131 Sum_probs=129.1
Q ss_pred EEEEecCCCCC-CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHH
Q 003878 524 MFIVSKKNIKL-DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDF 602 (789)
Q Consensus 524 ~~l~~p~~~~~-~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~ 602 (789)
+.+++|++... .++.|+||++||+.+.. ..|.. ....|.++||.|+++|+||++ ...|+
T Consensus 34 ~~~~~p~~~~~~g~~~p~vv~~HG~~~~~--~~~~~-~~~~l~~~G~~v~~~d~~~s~-----------------~~~~~ 93 (258)
T 2fx5_A 34 CRIYRPRDLGQGGVRHPVILWGNGTGAGP--STYAG-LLSHWASHGFVVAAAETSNAG-----------------TGREM 93 (258)
T ss_dssp EEEEEESSTTGGGCCEEEEEEECCTTCCG--GGGHH-HHHHHHHHTCEEEEECCSCCT-----------------TSHHH
T ss_pred EEEEeCCCCcccCCCceEEEEECCCCCCc--hhHHH-HHHHHHhCCeEEEEecCCCCc-----------------cHHHH
Confidence 67788876321 23789999999987643 23333 445565589999999999641 11355
Q ss_pred HHHHHHHHHc---------CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCC
Q 003878 603 ISASEYLISA---------GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGC 673 (789)
Q Consensus 603 ~~~~~~L~~~---------~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~ 673 (789)
..+++++.+. ..++.++++++|+|+||.+++.++ .+++++++|+..|.....
T Consensus 94 ~~~~~~l~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a--~~~~v~~~v~~~~~~~~~----------------- 154 (258)
T 2fx5_A 94 LACLDYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAG--QDTRVRTTAPIQPYTLGL----------------- 154 (258)
T ss_dssp HHHHHHHHHHHHSSSSTTTTTEEEEEEEEEEEEHHHHHHHHHT--TSTTCCEEEEEEECCSST-----------------
T ss_pred HHHHHHHHhcccccccccccccCccceEEEEEChHHHHHHHhc--cCcCeEEEEEecCccccc-----------------
Confidence 5556665542 245778999999999999998887 457899999877643210
Q ss_pred CCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHH-HHHHHHHHHHhhccCCCCCCCCCcEEEE
Q 003878 674 SEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH-SLKLLATMQYVLCTSLENSPQTNPIIGR 752 (789)
Q Consensus 674 p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~-~~~~~~~L~~~~~~~~~~~~~~~~~~l~ 752 (789)
+.. ...+.++ .+|+|+++|++|..+++.. +.+++++ . +.+++++
T Consensus 155 ~~~------------~~~~~~i----------~~P~lii~G~~D~~~~~~~~~~~~~~~---~----------~~~~~~~ 199 (258)
T 2fx5_A 155 GHD------------SASQRRQ----------QGPMFLMSGGGDTIAFPYLNAQPVYRR---A----------NVPVFWG 199 (258)
T ss_dssp TCC------------GGGGGCC----------SSCEEEEEETTCSSSCHHHHTHHHHHH---C----------SSCEEEE
T ss_pred ccc------------hhhhccC----------CCCEEEEEcCCCcccCchhhHHHHHhc---c----------CCCeEEE
Confidence 000 0122333 5799999999999999886 7776655 3 5678999
Q ss_pred EeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 753 IERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 753 ~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
+++++||.......+ +....+.+||.++|.
T Consensus 200 ~~~g~~H~~~~~~~~--~~~~~i~~fl~~~l~ 229 (258)
T 2fx5_A 200 ERRYVSHFEPVGSGG--AYRGPSTAWFRFQLM 229 (258)
T ss_dssp EESSCCTTSSTTTCG--GGHHHHHHHHHHHHH
T ss_pred EECCCCCccccchHH--HHHHHHHHHHHHHhc
Confidence 999999987654332 456678899998774
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.2e-15 Score=162.97 Aligned_cols=207 Identities=14% Similarity=0.107 Sum_probs=135.4
Q ss_pred eEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCC--------------hh
Q 003878 520 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYG--------------EE 585 (789)
Q Consensus 520 ~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g--------------~~ 585 (789)
..+|.....|.. ..++.|+||++||+.+... .|.. ....|+++||+|+++|+||+|... ..
T Consensus 82 ~~~p~~~~~P~~--~~~~~P~Vv~~HG~~~~~~--~~~~-~a~~La~~Gy~V~~~d~~g~g~s~~~~~~~~~~~~~~~~~ 156 (383)
T 3d59_A 82 MTTPANWNSPLR--PGEKYPLVVFSHGLGAFRT--LYSA-IGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDKS 156 (383)
T ss_dssp CEESSEETCCBC--CSSCEEEEEEECCTTCCTT--TTHH-HHHHHHHTTCEEEEECCCSSCSSEEEECSSHHHHHHTCCE
T ss_pred eeeccccCCCcc--cCCCCCEEEEcCCCCCCch--HHHH-HHHHHHhCceEEEEeccCCCCccceeecCCccccccCCce
Confidence 666665555543 2468899999999876543 3443 455566699999999999976532 11
Q ss_pred HHhc----cccc------CCcchHHHHHHHHHHHHH--------------------cCCCCCCcEEEEeeChHHHHHHHH
Q 003878 586 WHKG----GALA------KKQNCFDDFISASEYLIS--------------------AGYTQSRKLCIEGGSNGGLLVGAC 635 (789)
Q Consensus 586 ~~~~----~~~~------~~~~~~~D~~~~~~~L~~--------------------~~~~d~~~i~i~G~S~GG~l~~~~ 635 (789)
|... +... .-....+|+.+++++|.+ .+.+|++||+++|||+||.+++.+
T Consensus 157 ~~~~~~~~g~~~~~~~~~~~~~~~~d~~~~l~~l~~~~~~~~~~~~~~~~~d~~~~~~~~d~~~i~l~G~S~GG~~a~~~ 236 (383)
T 3d59_A 157 WLYLRTLKQEEETHIRNEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQT 236 (383)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSCCSCCGGGGTTCEEEEEEEEEEETHHHHHHHHH
T ss_pred eeeccccCcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccchhhhhccccccceeEEEEChhHHHHHHH
Confidence 1100 0000 001124688899999876 456788999999999999999999
Q ss_pred HHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecC
Q 003878 636 INQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTAD 715 (789)
Q Consensus 636 ~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~ 715 (789)
+.+.| +++|+|+..|... |...+. ..++ ..|+|++||+
T Consensus 237 a~~~~-~v~a~v~~~~~~~-------------------p~~~~~------------~~~i----------~~P~Lii~g~ 274 (383)
T 3d59_A 237 LSEDQ-RFRCGIALDAWMF-------------------PLGDEV------------YSRI----------PQPLFFINSE 274 (383)
T ss_dssp HHHCT-TCCEEEEESCCCT-------------------TCCGGG------------GGSC----------CSCEEEEEET
T ss_pred HhhCC-CccEEEEeCCccC-------------------CCchhh------------hccC----------CCCEEEEecc
Confidence 88855 6999998877431 100000 1222 5799999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCC--------------------chhhHHHHH-HH
Q 003878 716 HDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL--------------------PTQKMIDEA-AD 774 (789)
Q Consensus 716 ~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~--------------------~~~~~~~~~-~~ 774 (789)
+|..+ .. .+..++|... +.+.++.++++++|.+.. ......+.. +.
T Consensus 275 ~D~~~--~~-~~~~~~l~~~----------~~~~~~~~~~g~~H~~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 341 (383)
T 3d59_A 275 YFQYP--AN-IIKMKKCYSP----------DKERKMITIRGSVHQNFADFTFATGKIIGHMLKLKGDIDSNVAIDLSNKA 341 (383)
T ss_dssp TTCCH--HH-HHHHHTTCCT----------TSCEEEEEETTCCGGGGSGGGGSSCHHHHHHTTSSCSSCHHHHHHHHHHH
T ss_pred cccch--hh-HHHHHHHHhc----------CCceEEEEeCCCcCCCcccHhhhhhHHhhhhhcccCCcCHHHHHHHHHHH
Confidence 99743 22 2333444443 778999999999998521 122222333 46
Q ss_pred HHHHHHHHhCCC
Q 003878 775 RYGFMAKMLGAS 786 (789)
Q Consensus 775 ~~~fl~~~l~~~ 786 (789)
+++||+++|+..
T Consensus 342 ~~~Fl~~~L~~~ 353 (383)
T 3d59_A 342 SLAFLQKHLGLH 353 (383)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHcCCc
Confidence 999999999754
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=140.76 Aligned_cols=173 Identities=12% Similarity=0.037 Sum_probs=120.7
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
++.|+||++||..+......+. .....+.++||.|+.+|+||.|.... ........+++.++++++.+..
T Consensus 2 ~~~~~vv~~HG~~~~~~~~~~~-~~~~~l~~~g~~v~~~d~~g~g~s~~-------~~~~~~~~~~~~~~~~~~~~~~-- 71 (176)
T 2qjw_A 2 MSRGHCILAHGFESGPDALKVT-ALAEVAERLGWTHERPDFTDLDARRD-------LGQLGDVRGRLQRLLEIARAAT-- 71 (176)
T ss_dssp CSSCEEEEECCTTCCTTSHHHH-HHHHHHHHTTCEEECCCCHHHHTCGG-------GCTTCCHHHHHHHHHHHHHHHH--
T ss_pred CCCcEEEEEeCCCCCccHHHHH-HHHHHHHHCCCEEEEeCCCCCCCCCC-------CCCCCCHHHHHHHHHHHHHhcC--
Confidence 4679999999976543222222 34556666899999999998654211 1111223344555666766653
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCC
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRP 695 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~ 695 (789)
+.++++++|+|+||.+++.++.++| ++++|+..|..+...+. .....
T Consensus 72 ~~~~~~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~~~~~-------------------------------~~~~~ 118 (176)
T 2qjw_A 72 EKGPVVLAGSSLGSYIAAQVSLQVP--TRALFLMVPPTKMGPLP-------------------------------ALDAA 118 (176)
T ss_dssp TTSCEEEEEETHHHHHHHHHHTTSC--CSEEEEESCCSCBTTBC-------------------------------CCCCC
T ss_pred CCCCEEEEEECHHHHHHHHHHHhcC--hhheEEECCcCCccccC-------------------------------ccccc
Confidence 4579999999999999999999988 99999988876542110 02232
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHH
Q 003878 696 WEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADR 775 (789)
Q Consensus 696 ~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~ 775 (789)
.+|+|+++|++|..||+.++.++++.+ . +++.++ ++||.+.. ...+..+.+
T Consensus 119 ----------~~P~l~i~g~~D~~~~~~~~~~~~~~~-~--------------~~~~~~-~~~H~~~~---~~~~~~~~i 169 (176)
T 2qjw_A 119 ----------AVPISIVHAWHDELIPAADVIAWAQAR-S--------------ARLLLV-DDGHRLGA---HVQAASRAF 169 (176)
T ss_dssp ----------SSCEEEEEETTCSSSCHHHHHHHHHHH-T--------------CEEEEE-SSCTTCTT---CHHHHHHHH
T ss_pred ----------CCCEEEEEcCCCCccCHHHHHHHHHhC-C--------------ceEEEe-CCCccccc---cHHHHHHHH
Confidence 679999999999999999999988776 2 267777 89999842 223455667
Q ss_pred HHHHH
Q 003878 776 YGFMA 780 (789)
Q Consensus 776 ~~fl~ 780 (789)
.+||.
T Consensus 170 ~~fl~ 174 (176)
T 2qjw_A 170 AELLQ 174 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77775
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-14 Score=154.06 Aligned_cols=313 Identities=12% Similarity=0.047 Sum_probs=183.9
Q ss_pred CCceEeCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEE
Q 003878 84 DAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLM 163 (789)
Q Consensus 84 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~ 163 (789)
....++|.+++|.....+.. .||+.+..+++.+.|++... ..+..+.|||||++|+|+... .+|+++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~--~l~~~d~~~g~~~~lt~~~~------~~~~~~~~spdg~~l~~~~~~-----~~l~~~ 107 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPW--NYYLLDLNTQVATQLTEGRG------DNTFGGFLSPDDDALFYVKDG-----RNLMRV 107 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSC--EEEEEETTTCEEEECCCSSC------BCSSSCEECTTSSEEEEEETT-----TEEEEE
T ss_pred ccCCCCCCEEEEEEcCCCCc--eEEEEeCCCCceEEeeeCCC------CCccceEEcCCCCEEEEEeCC-----CeEEEE
Confidence 34567899999988754433 48888766666555554321 112246799999999998742 379999
Q ss_pred EcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEE
Q 003878 164 RIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWT 243 (789)
Q Consensus 164 dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~ws 243 (789)
|+++++..... .. |.+. . ......++
T Consensus 108 d~~~g~~~~~~--~~---------------------~~~~--------------------------~-----~~~~~~~~ 133 (388)
T 3pe7_A 108 DLATLEENVVY--QV---------------------PAEW--------------------------V-----GYGTWVAN 133 (388)
T ss_dssp ETTTCCEEEEE--EC---------------------CTTE--------------------------E-----EEEEEEEC
T ss_pred ECCCCcceeee--ec---------------------hhhc--------------------------c-----cccceeEC
Confidence 99999654311 11 0000 0 01223448
Q ss_pred eCCcEEEEEEccCCCCCCCCCCCc----cccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEec-CCcEEEEEE
Q 003878 244 HDSKGFFYSRYPAPKEGKDMDAGT----ETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE-DGQYLVMCI 318 (789)
Q Consensus 244 pDg~~i~y~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~Sp-DG~~l~~~~ 318 (789)
|||+.++.......+... ..... .-.......|+++++.++.. ..+.... ..+..+.||| ||++|++..
T Consensus 134 ~dg~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~---~~~~~~~~sp~dg~~l~~~~ 207 (388)
T 3pe7_A 134 SDCTKLVGIEIRREDWVP-LTDWKKFHEFYFTKPCCRLMRVDLKTGES--TVILQEN---QWLGHPIYRPYDDSTVAFCH 207 (388)
T ss_dssp TTSSEEEEEEEEGGGCCC-CCSHHHHHHHGGGCCCEEEEEEETTTCCE--EEEEEES---SCEEEEEEETTEEEEEEEEE
T ss_pred CCCCeeccccccCccccc-ccccchhhhhhccCCcceEEEEECCCCce--EEeecCC---ccccccEECCCCCCEEEEEE
Confidence 999998865432210000 00000 00012336799999987643 3343332 2356789999 999999987
Q ss_pred EcCCC-CceEEEEEECCCCCCCcccccccCCCCccEeeeccc---cceeEEEecCCCEEEEEECCCCC-CceEEEEECCC
Q 003878 319 EENCD-PVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF---DAQYEVIANDDTVFTFLTNKDAP-KYKIIRVDLKE 393 (789)
Q Consensus 319 ~~~~~-~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~s~dG~~l~~~tn~~~~-~~~L~~~dl~~ 393 (789)
..... ...+||+++++++. ...+.... ....+.|+|||+.|++.++..+. ...|+++|+++
T Consensus 208 ~~~~~~~~~~l~~~d~~~~~--------------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 273 (388)
T 3pe7_A 208 EGPHDLVDARMWLINEDGTN--------------MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET 273 (388)
T ss_dssp CSCTTTSSCSEEEEETTSCC--------------CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT
T ss_pred ecCCCCCcceEEEEeCCCCc--------------eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCC
Confidence 54321 24579999987642 12232221 11235699999999888776432 34699999998
Q ss_pred CCCeEEeccCCCC-ce---eeeEEEecC-CEEEEEEEe------CCeEEEEEEECCCCceeeecccCCe-----------
Q 003878 394 PNDWFEVIPEAER-DV---LESATAVNL-NQMIVSYLS------DVKYVLQIRDLKNGSLLHQLPIEIG----------- 451 (789)
Q Consensus 394 ~~~~~~l~~~~~~-~~---i~~v~~~~~-~~lv~~~~~------~g~~~L~~~dl~tG~~~~~l~~~~~----------- 451 (789)
++ .+.+...... .. ..+..|+++ +.+++.... .+...|+++|+++|+. +.|+.+..
T Consensus 274 g~-~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~ 351 (388)
T 3pe7_A 274 LE-NRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQV 351 (388)
T ss_dssp CC-EEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSST
T ss_pred Cc-eEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCccccccccccc
Confidence 86 3444332210 00 112245553 455554433 4556899999997765 56654433
Q ss_pred eEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 452 SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 452 ~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
.+..++++||++.+++.... ...+.+|.+++.++
T Consensus 352 ~~~~~~~spDg~~l~~~s~~-~g~~~l~~~~l~~~ 385 (388)
T 3pe7_A 352 THPHPSFTPDDKQILFTSDV-HGKPALYLATLPES 385 (388)
T ss_dssp TCCCCEECTTSSEEEEEECT-TSSCEEEEEECCGG
T ss_pred CCCCccCCCCCCEEEEEecC-CCceeEEEEECChh
Confidence 24456889999988877543 56678999998765
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.2e-15 Score=163.69 Aligned_cols=224 Identities=14% Similarity=0.068 Sum_probs=147.1
Q ss_pred cEEEEEEecC-CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeE----EEEEeecCCCC
Q 003878 507 HVHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAV----FCIANIRGGGE 581 (789)
Q Consensus 507 ~~~~~~~~s~-dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~----v~~~~~RG~g~ 581 (789)
..+.+.+.|. .| ..++++++.|++.. .++.|+|+++||+...... .+......+.+ +|++ |+.+|++|++.
T Consensus 167 ~v~~~~~~S~~~g-~~~~~~vy~P~~~~-~~~~PvlvllHG~~~~~~~-~~~~~~~~l~~-~g~~~p~iVV~~d~~~~~~ 242 (403)
T 3c8d_A 167 PAKEIIWKSERLK-NSRRVWIFTTGDVT-AEERPLAVLLDGEFWAQSM-PVWPVLTSLTH-RQQLPPAVYVLIDAIDTTH 242 (403)
T ss_dssp CCEEEEEEETTTT-EEEEEEEEEC------CCCCEEEESSHHHHHHTS-CCHHHHHHHHH-TTSSCSCEEEEECCCSHHH
T ss_pred ceEEEEEEccccC-CcEEEEEEeCCCCC-CCCCCEEEEeCCHHHhhcC-cHHHHHHHHHH-cCCCCCeEEEEECCCCCcc
Confidence 3466777764 68 89999999998753 5689999999996432221 22222334444 7874 99999876321
Q ss_pred CChhHHhcccccCCcchHHHHH--HHHHHHHHc-C-CCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccc
Q 003878 582 YGEEWHKGGALAKKQNCFDDFI--SASEYLISA-G-YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR 657 (789)
Q Consensus 582 ~g~~~~~~~~~~~~~~~~~D~~--~~~~~L~~~-~-~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~ 657 (789)
.... ......+.|++ +++.++.++ + ..|+++++|+|+|+||++++.++.++|++|+++++.+|.+++..
T Consensus 243 -----r~~~--~~~~~~~~~~l~~el~~~i~~~~~~~~d~~~~~l~G~S~GG~~al~~a~~~p~~f~~~~~~sg~~~~~~ 315 (403)
T 3c8d_A 243 -----RAHE--LPCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPH 315 (403)
T ss_dssp -----HHHH--SSSCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTTTTC
T ss_pred -----cccc--CCChHHHHHHHHHHHHHHHHHHCCCCCCCCceEEEEECHHHHHHHHHHHhCchhhcEEEEeccccccCC
Confidence 1110 01123455554 456666654 2 35889999999999999999999999999999999999875322
Q ss_pred cccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhc
Q 003878 658 YHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLC 737 (789)
Q Consensus 658 ~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~ 737 (789)
. +.+.+....+.+.. . .... ..+|+++.||+.|+.+ ..++.+++++|++.
T Consensus 316 ~-------------~~~~~~~~~~~~~~-~---~~~~----------~~~~i~l~~G~~D~~~-~~~~~~l~~~L~~~-- 365 (403)
T 3c8d_A 316 R-------------GGQQEGVLLEKLKA-G---EVSA----------EGLRIVLEAGIREPMI-MRANQALYAQLHPI-- 365 (403)
T ss_dssp T-------------TSSSCCHHHHHHHT-T---SSCC----------CSCEEEEEEESSCHHH-HHHHHHHHHHTGGG--
T ss_pred C-------------CCCcHHHHHHHHHh-c---cccC----------CCceEEEEeeCCCchh-HHHHHHHHHHHHhC--
Confidence 1 01111111122222 1 1122 2578999999998754 67899999999988
Q ss_pred cCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 738 TSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 738 ~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
|.++++.++++ ||... .....+.+.+.||.+.+.
T Consensus 366 --------G~~v~~~~~~G-gH~~~----~w~~~l~~~l~~l~~~~~ 399 (403)
T 3c8d_A 366 --------KESIFWRQVDG-GHDAL----CWRGGLMQGLIDLWQPLF 399 (403)
T ss_dssp --------TTSEEEEEESC-CSCHH----HHHHHHHHHHHHHHGGGT
T ss_pred --------CCCEEEEEeCC-CCCHH----HHHHHHHHHHHHHhcccc
Confidence 99999999998 69842 123556778888876543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.60 E-value=6e-13 Score=138.49 Aligned_cols=258 Identities=14% Similarity=0.067 Sum_probs=164.0
Q ss_pred eEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCC-Cceecccccccccccc
Q 003878 105 SVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED-QIVEADALSWVCFCFS 183 (789)
Q Consensus 105 ~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~t-g~~~~~~~~~~~~~~~ 183 (789)
..|++.+..+++.+.++... ..+..++|||||++|+++. .+ .|++||+++ ++..... ...
T Consensus 22 ~~i~~~d~~~~~~~~~~~~~-------~~v~~~~~spdg~~l~~~~--~~----~i~~~d~~~~~~~~~~~-~~~----- 82 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVWQTP-------ELFEAPNWSPDGKYLLLNS--EG----LLYRLSLAGDPSPEKVD-TGF----- 82 (297)
T ss_dssp EEEEEEETTTTEEEEEEEES-------SCCEEEEECTTSSEEEEEE--TT----EEEEEESSSCCSCEECC-CTT-----
T ss_pred eeEEEEeCCCCceeeeccCC-------cceEeeEECCCCCEEEEEc--CC----eEEEEeCCCCCCceEec-ccc-----
Confidence 45777765555555555432 2367889999999999864 22 799999999 7554311 110
Q ss_pred cCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCC
Q 003878 184 HSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDM 263 (789)
Q Consensus 184 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~ 263 (789)
+.. ....++|+|||+.|++.....
T Consensus 83 ----------------~~~---------------------------------~~~~~~~spdg~~l~~~~~~~------- 106 (297)
T 2ojh_A 83 ----------------ATI---------------------------------CNNDHGISPDGALYAISDKVE------- 106 (297)
T ss_dssp ----------------CCC---------------------------------BCSCCEECTTSSEEEEEECTT-------
T ss_pred ----------------ccc---------------------------------cccceEECCCCCEEEEEEeCC-------
Confidence 000 246799999999999986432
Q ss_pred CCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccc
Q 003878 264 DAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF 343 (789)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~ 343 (789)
....+|+.+++.+... ..+ .... . ...+.|||||++|++...... ...||.+++.++.
T Consensus 107 --------~~~~~l~~~~~~~~~~--~~~-~~~~-~--~~~~~~spdg~~l~~~~~~~~--~~~l~~~~~~~~~------ 164 (297)
T 2ojh_A 107 --------FGKSAIYLLPSTGGTP--RLM-TKNL-P--SYWHGWSPDGKSFTYCGIRDQ--VFDIYSMDIDSGV------ 164 (297)
T ss_dssp --------TSSCEEEEEETTCCCC--EEC-CSSS-S--EEEEEECTTSSEEEEEEEETT--EEEEEEEETTTCC------
T ss_pred --------CCcceEEEEECCCCce--EEe-ecCC-C--ccceEECCCCCEEEEEECCCC--ceEEEEEECCCCc------
Confidence 1345688888765432 222 2211 1 456899999999998765433 4678888887642
Q ss_pred cccCCCCccEeeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCE-EE
Q 003878 344 KKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ-MI 421 (789)
Q Consensus 344 ~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~-lv 421 (789)
...+.... ......|+|+|+.|++.+..+ ...+|+.+++.++. ...+..+. ..+..+.|++++. ++
T Consensus 165 --------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-~~~~i~~~~~~~~~-~~~~~~~~--~~~~~~~~s~dg~~l~ 232 (297)
T 2ojh_A 165 --------ETRLTHGEGRNDGPDYSPDGRWIYFNSSRT-GQMQIWRVRVDGSS-VERITDSA--YGDWFPHPSPSGDKVV 232 (297)
T ss_dssp --------EEECCCSSSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTSSC-EEECCCCS--EEEEEEEECTTSSEEE
T ss_pred --------ceEcccCCCccccceECCCCCEEEEEecCC-CCccEEEECCCCCC-cEEEecCC--cccCCeEECCCCCEEE
Confidence 12222211 122345999999999887654 46789999987665 45554433 4567788888654 55
Q ss_pred EEEEeC--------CeEEEEEEECCCCceeeecc--cCCeeEEEeecccCCcEEEEEEcC
Q 003878 422 VSYLSD--------VKYVLQIRDLKNGSLLHQLP--IEIGSVNAISARREDSVVFISFTS 471 (789)
Q Consensus 422 ~~~~~~--------g~~~L~~~dl~tG~~~~~l~--~~~~~v~~~s~s~d~~~l~~~~ss 471 (789)
+..... +...|++||+++++...... ...+.+..+.++|+++.+++....
T Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 233 FVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp EEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred EEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence 544443 34689999998776522222 223345567889999988876544
|
| >2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=8.3e-15 Score=161.45 Aligned_cols=239 Identities=12% Similarity=0.044 Sum_probs=146.0
Q ss_pred EecCCCceEEEEEEEecCC---CCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHH----cCCe---EEEEEeecCCCCC
Q 003878 513 VPSKDGSTKIPMFIVSKKN---IKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMR----HLGA---VFCIANIRGGGEY 582 (789)
Q Consensus 513 ~~s~dg~~~i~~~l~~p~~---~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~----~~G~---~v~~~~~RG~g~~ 582 (789)
+...|| .+|.+..+.|.+ ..+.++.|+||++||..+... .|.... ..|. +.|| .|+++|+||.|..
T Consensus 25 ~~~~dg-~~l~~~~~g~~~~~~~~~~~~~~~vvllHG~~~~~~--~~~~~~-~~L~~~~~~~G~~~~~vi~~D~~G~G~S 100 (398)
T 2y6u_A 25 LCATDR-LELTYDVYTSAERQRRSRTATRLNLVFLHGSGMSKV--VWEYYL-PRLVAADAEGNYAIDKVLLIDQVNHGDS 100 (398)
T ss_dssp SSTTCC-CEEEEEEEEESCTTTCCTTCEEEEEEEECCTTCCGG--GGGGGG-GGSCCCBTTTTEEEEEEEEECCTTSHHH
T ss_pred ccCCCc-eEEEEEEEecCCCCCCCCCCCCCeEEEEcCCCCcHH--HHHHHH-HHHHHhhhhcCcceeEEEEEcCCCCCCC
Confidence 557799 999999998865 122355689999999876543 233322 3343 3589 9999999996642
Q ss_pred ChhHHhcccccCCcchHHHHHHHHHHHHHc-C---CCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc
Q 003878 583 GEEWHKGGALAKKQNCFDDFISASEYLISA-G---YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY 658 (789)
Q Consensus 583 g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~-~---~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~ 658 (789)
.. ..........++.+..+.+..+++. . -.++.+++++|+|+||.+++.++.++|++++++|+..|.......
T Consensus 101 ~~---~~~~~~~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~ 177 (398)
T 2y6u_A 101 AV---RNRGRLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLILIEPVVITRKA 177 (398)
T ss_dssp HH---HTTTTBCSCCCHHHHHHHHHHHHHHHTCSSTTCSEEEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCCCC
T ss_pred CC---CCccccCCCCCcchHHHHHHHHHHHhcccccccCCceEEEEEChhHHHHHHHHHhCchheeEEEEeccccccccc
Confidence 21 1100011233444444444333332 1 134456999999999999999999999999999999887664210
Q ss_pred -------cc---------------ccCCccc---------hh--hcCCCCcHHHHHHHHhc-------------------
Q 003878 659 -------HK---------------FTIGHAW---------VS--DFGCSEEEEEFYWLIKY------------------- 686 (789)
Q Consensus 659 -------~~---------------~~~~~~~---------~~--e~g~p~~~~~~~~l~~~------------------- 686 (789)
.. ......| .. .+....+++..+.+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (398)
T 2y6u_A 178 IGAGRPGLPPDSPQIPENLYNSLRLKTCDHFANESEYVKYMRNGSFFTNAHSQILQNIIDFERTKASGDDEDGGPVRTKM 257 (398)
T ss_dssp CSCCCTTCCTTCCCCCHHHHHHHHHTCCCEESSHHHHHHHHHHTSTTTTSCHHHHHHHHHHHEEC--------CCEEESS
T ss_pred cccccccccccccccchhhHHHhhhhccccCCCHHHHHHHhhcCcccccCCHHHHHHHHHhcCccccccccCCCceEecC
Confidence 00 0000000 00 01111233333222211
Q ss_pred ---------C--------cccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcE
Q 003878 687 ---------S--------PLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPI 749 (789)
Q Consensus 687 ---------s--------P~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 749 (789)
. +...+..+ .+|+|+++|++|..||+..+.++.+.+. .+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~PvLii~G~~D~~~~~~~~~~l~~~~~--------------~~ 313 (398)
T 2y6u_A 258 EQAQNLLCYMNMQTFAPFLISNVKFV----------RKRTIHIVGARSNWCPPQNQLFLQKTLQ--------------NY 313 (398)
T ss_dssp CHHHHHHTTSCGGGTHHHHHHHGGGC----------CSEEEEEEETTCCSSCHHHHHHHHHHCS--------------SE
T ss_pred CchhhhhhhcccccchHHHHHhcccc----------CCCEEEEEcCCCCCCCHHHHHHHHHhCC--------------Cc
Confidence 0 00112222 6899999999999999988877766543 35
Q ss_pred EEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 750 IGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 750 ~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
++.+++++||...... ..+....+.+||.+++.
T Consensus 314 ~~~~~~~~gH~~~~e~--p~~~~~~i~~fl~~~~~ 346 (398)
T 2y6u_A 314 HLDVIPGGSHLVNVEA--PDLVIERINHHIHEFVL 346 (398)
T ss_dssp EEEEETTCCTTHHHHS--HHHHHHHHHHHHHHHHH
T ss_pred eEEEeCCCCccchhcC--HHHHHHHHHHHHHHHHH
Confidence 7899999999864322 23566778899988763
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-13 Score=163.99 Aligned_cols=293 Identities=11% Similarity=0.043 Sum_probs=173.3
Q ss_pred EeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceee
Q 003878 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFF 214 (789)
Q Consensus 135 ~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 214 (789)
.+++|||||++|+.. .| +|++||++||+.... +.... +.-+..-..+..++|+++
T Consensus 20 ~~~~w~~dg~~~~~~---~~----~i~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~Spdg~----------- 74 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ---EN----NILVFNAEYGNSSVF-LENST------FDEFGHSINDYSISPDGQ----------- 74 (740)
T ss_dssp CCEEECSSSEEEEEE---TT----EEEEEETTTCCEEEE-ECTTT------TTTCCSCCCEEEECTTSS-----------
T ss_pred cccEECCCCcEEEEc---CC----cEEEEECCCCceEEE-Eechh------hhhhcccccceEECCCCC-----------
Confidence 468899999877653 23 799999999975421 11110 000000001234579997
Q ss_pred EEEeeecccc------ceeeeeeec------cc-----ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEE
Q 003878 215 FYLFSLVKST------IYSFWSVVS------QF-----KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEF 277 (789)
Q Consensus 215 ~~~~~s~~~g------~~~l~~~~~------~~-----~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i 277 (789)
+++|.++... ...+|.++. ++ ....++|||||+.|+|++. ..|
T Consensus 75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~--------------------~~i 134 (740)
T 4a5s_A 75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWN--------------------NDI 134 (740)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEET--------------------TEE
T ss_pred EEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEEC--------------------CeE
Confidence 6777776432 245555554 11 1367999999999999853 248
Q ss_pred EEEECCCCCCCcEEEEecCCCCee---------------EEEEEEecCCcEEEEEEEcCCC-------------------
Q 003878 278 YYHFLGTKQSEDILCWKDPEHPKY---------------IFSGHVTEDGQYLVMCIEENCD------------------- 323 (789)
Q Consensus 278 ~~~~lg~~~~~~~~~~~~~~~~~~---------------~~~~~~SpDG~~l~~~~~~~~~------------------- 323 (789)
|++++.++... .+.........+ ..++.|||||++|++.+.+...
T Consensus 135 ~~~~~~~~~~~-~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~ 213 (740)
T 4a5s_A 135 YVKIEPNLPSY-RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKT 213 (740)
T ss_dssp EEESSTTSCCE-ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEE
T ss_pred EEEECCCCceE-EEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcc
Confidence 88888665422 111111110000 1247899999999998754321
Q ss_pred ------------CceEEEEEECCC---CCCCcccccccCCCCccEeeecc-----cc--ceeEEEecCCCEEEEEECCCC
Q 003878 324 ------------PVNKVYYCDLSA---LPEGLEGFKKRDGLLPFVKLIDG-----FD--AQYEVIANDDTVFTFLTNKDA 381 (789)
Q Consensus 324 ------------~~~~i~~~d~~~---g~~~~~~~~~~~~~~~~~~l~~~-----~~--~~~~~~s~dG~~l~~~tn~~~ 381 (789)
....|+++|+++ +.. .....+... .+ .....|||||+.+++..++..
T Consensus 214 ~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~ 282 (740)
T 4a5s_A 214 VRVPYPKAGAVNPTVKFFVVNTDSLSSVTN-----------ATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQ 282 (740)
T ss_dssp EEEECCBTTSCCCEEEEEEEETTSCCSSSC-----------CCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESST
T ss_pred eeecCCCCcCcCCeeEEEEEECCCCCCCCc-----------ceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC
Confidence 123688888877 520 011222210 11 112459999998888888776
Q ss_pred CCceEEEEECCCCC------CeEEeccCCCCcee-----eeEEEecCC-EEE-EEEEeCCeEEEEEEECCCCceeeeccc
Q 003878 382 PKYKIIRVDLKEPN------DWFEVIPEAERDVL-----ESATAVNLN-QMI-VSYLSDVKYVLQIRDLKNGSLLHQLPI 448 (789)
Q Consensus 382 ~~~~L~~~dl~~~~------~~~~l~~~~~~~~i-----~~v~~~~~~-~lv-~~~~~~g~~~L~~~dl~tG~~~~~l~~ 448 (789)
....|+++|+++++ ....++.+.....+ ..+.|++|+ .++ +....+|..+|+++++++++. ++|+.
T Consensus 283 ~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-~~lT~ 361 (740)
T 4a5s_A 283 NYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-TFITK 361 (740)
T ss_dssp TEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-EESCC
T ss_pred CEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-Eeccc
Confidence 67789999998764 11222222222222 367788864 455 455577889999999986554 67876
Q ss_pred CCeeEEEeecccCCcEEEEEEcC---CCCCcEEEEEECCCC
Q 003878 449 EIGSVNAISARREDSVVFISFTS---FLIPGIVYQCNLKTE 486 (789)
Q Consensus 449 ~~~~v~~~s~s~d~~~l~~~~ss---~~~P~~ly~~dl~tg 486 (789)
....+..+. .+|++.++|..+. -..-..+|++++.++
T Consensus 362 g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~ 401 (740)
T 4a5s_A 362 GTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDY 401 (740)
T ss_dssp SSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEE
T ss_pred CCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCC
Confidence 655554432 2457888877643 123357888888765
|
| >2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.8e-14 Score=153.91 Aligned_cols=236 Identities=14% Similarity=0.099 Sum_probs=145.2
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCC-----------CCCHHHH---HHHHcCCeEEEEEeecC--CC
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP-----------SFSVSRT---ILMRHLGAVFCIANIRG--GG 580 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~-----------~~~~~~~---~~l~~~G~~v~~~~~RG--~g 580 (789)
+| .+|.+...-+.+ ..+.|+||++||..+..... .|..... .++. +||.|+++|+|| .|
T Consensus 29 ~g-~~l~y~~~g~~~---~~~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~g~~vi~~D~~G~~~G 103 (366)
T 2pl5_A 29 SP-VVIAYETYGTLS---SSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDT-NQYFIICSNVIGGCKG 103 (366)
T ss_dssp SS-EEEEEEEEECCC---TTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEET-TTCEEEEECCTTCSSS
T ss_pred cC-ceeeEEeccCcC---CCCCceEEEecccCCcccccccccccccccchHHhhcCCcccccc-cccEEEEecCCCcccC
Confidence 45 566655554332 12458999999987765421 3333211 2334 899999999999 56
Q ss_pred CCChhHHhcc--c---ccCCcchHHHHHHHHHHHHHcCCCCCCcE-EEEeeChHHHHHHHHHHhCCCceeEEEecCCccc
Q 003878 581 EYGEEWHKGG--A---LAKKQNCFDDFISASEYLISAGYTQSRKL-CIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 654 (789)
Q Consensus 581 ~~g~~~~~~~--~---~~~~~~~~~D~~~~~~~L~~~~~~d~~~i-~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d 654 (789)
..+..-.... . ......+++|+.+.+..+++. ...+++ .++|||+||.+++.++.++|++++++|+..|...
T Consensus 104 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 181 (366)
T 2pl5_A 104 SSGPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVES--LGIEKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMASTAE 181 (366)
T ss_dssp SSSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHH--TTCSSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSB
T ss_pred CCCCCCCCCCCCccccCCCCcccHHHHHHHHHHHHHH--cCCceEEEEEEeCccHHHHHHHHHhCcHhhhheeEeccCcc
Confidence 5432100000 0 000134678888877777765 345688 8999999999999999999999999999888654
Q ss_pred ccccc------------c--------c--------------------cCCccchhhcCC---------------------
Q 003878 655 MLRYH------------K--------F--------------------TIGHAWVSDFGC--------------------- 673 (789)
Q Consensus 655 ~~~~~------------~--------~--------------------~~~~~~~~e~g~--------------------- 673 (789)
..... . + .....+...+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (366)
T 2pl5_A 182 HSAMQIAFNEVGRQAILSDPNWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLIYQ 261 (366)
T ss_dssp CCHHHHHHHHHHHHHHHTSTTCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGGST
T ss_pred CCCccchhhHHHHHHHHhCcccccccccccccccchHHHHHhhccccCCHHHHHHHhhhhhhcccccchhhhHHHHHHHH
Confidence 32100 0 0 000000000000
Q ss_pred ------CCcHHH----HHHHHhcCccc------CCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhc
Q 003878 674 ------SEEEEE----FYWLIKYSPLH------NVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLC 737 (789)
Q Consensus 674 ------p~~~~~----~~~l~~~sP~~------~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~ 737 (789)
...+.. +..+..+.... .+.++ ..|+|+++|++|..||+..+.++.+.+...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~P~lii~G~~D~~~~~~~~~~~~~~~~~~-- 329 (366)
T 2pl5_A 262 GESFVDRFDANSYIYVTKALDHYSLGKGKELTAALSNA----------TCRFLVVSYSSDWLYPPAQSREIVKSLEAA-- 329 (366)
T ss_dssp TCCSSSCCCHHHHHHHHHHHHHCBCCSHHHHHHHHTTC----------CSEEEEEEETTCCSSCHHHHHHHHHHHHHT--
T ss_pred HHhhhcccChhHHHHHHhhhhhhccccccchhhhhccC----------CCCEEEEecCCCcccCHHHHHHHHHHhhhc--
Confidence 001111 12222222111 33343 689999999999999999999999999865
Q ss_pred cCCCCCCCCCcEEEEEe-CCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 738 TSLENSPQTNPIIGRIE-RKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 738 ~~~~~~~~~~~~~l~~~-~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
+...+++++ +++||....... .+..+.+.+||.+
T Consensus 330 --------~~~~~~~~~~~~~gH~~~~e~p--~~~~~~i~~fl~~ 364 (366)
T 2pl5_A 330 --------DKRVFYVELQSGEGHDSFLLKN--PKQIEILKGFLEN 364 (366)
T ss_dssp --------TCCEEEEEECCCBSSGGGGSCC--HHHHHHHHHHHHC
T ss_pred --------ccCeEEEEeCCCCCcchhhcCh--hHHHHHHHHHHcc
Confidence 556789999 899998754333 2566677888864
|
| >2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.8e-14 Score=138.46 Aligned_cols=181 Identities=10% Similarity=-0.067 Sum_probs=122.7
Q ss_pred CccEEEEEcCCCCccC-CCCCCHHHHHHHHcC-CeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCC
Q 003878 537 SHPCLLYGYGGFNISV-TPSFSVSRTILMRHL-GAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 614 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~-~~~~~~~~~~~l~~~-G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~ 614 (789)
+.|+||++||..+... ...|.......|.++ ||.|+.+|+||.+. .++...++.+++.-.
T Consensus 3 ~~p~vv~lHG~~~~~~~~~~~~~~~~~~l~~~~g~~vi~~d~~g~~~------------------~~~~~~~~~~~~~l~ 64 (194)
T 2qs9_A 3 SPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPIT------------------ARESIWLPFMETELH 64 (194)
T ss_dssp CCCEEEEECCSSSSCTTTSTTHHHHHHHHTTSTTCCEEECCCSSTTT------------------CCHHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCCcccchHHHHHHHHHhhccCceEEEeeCCCCCc------------------ccHHHHHHHHHHHhC
Confidence 5689999999876643 234444345667646 99999999998421 123344455554421
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhh-cCCCCcHHHHHHHHhcCcccCCC
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSD-FGCSEEEEEFYWLIKYSPLHNVR 693 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e-~g~p~~~~~~~~l~~~sP~~~v~ 693 (789)
. .+++.++|+|+||.+++.++.++| ++++|+..|......... ..... +..+.. ++.+.
T Consensus 65 ~-~~~~~lvG~S~Gg~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~--------- 124 (194)
T 2qs9_A 65 C-DEKTIIIGHSSGAIAAMRYAETHR--VYAIVLVSAYTSDLGDEN-----ERASGYFTRPWQ---WEKIK--------- 124 (194)
T ss_dssp C-CTTEEEEEETHHHHHHHHHHHHSC--CSEEEEESCCSSCTTCHH-----HHHTSTTSSCCC---HHHHH---------
T ss_pred c-CCCEEEEEcCcHHHHHHHHHHhCC--CCEEEEEcCCccccchhh-----hHHHhhhccccc---HHHHH---------
Confidence 1 379999999999999999999999 899999888765321110 00011 112211 11111
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHH
Q 003878 694 RPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAA 773 (789)
Q Consensus 694 ~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~ 773 (789)
.. .+|+|+++|++|..||+.++.++.+.+ .. ++.+++++||...... -+.++
T Consensus 125 ~~----------~~p~lii~G~~D~~vp~~~~~~~~~~~-~~--------------~~~~~~~~gH~~~~~~---p~~~~ 176 (194)
T 2qs9_A 125 AN----------CPYIVQFGSTDDPFLPWKEQQEVADRL-ET--------------KLHKFTDCGHFQNTEF---HELIT 176 (194)
T ss_dssp HH----------CSEEEEEEETTCSSSCHHHHHHHHHHH-TC--------------EEEEESSCTTSCSSCC---HHHHH
T ss_pred hh----------CCCEEEEEeCCCCcCCHHHHHHHHHhc-CC--------------eEEEeCCCCCccchhC---HHHHH
Confidence 12 579999999999999999999988887 43 7889999999976433 34566
Q ss_pred HHHHHHHHHh
Q 003878 774 DRYGFMAKML 783 (789)
Q Consensus 774 ~~~~fl~~~l 783 (789)
.+++||.+..
T Consensus 177 ~~~~fl~~~~ 186 (194)
T 2qs9_A 177 VVKSLLKVPA 186 (194)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHHHhhh
Confidence 7789997654
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.57 E-value=5e-14 Score=144.69 Aligned_cols=212 Identities=15% Similarity=0.049 Sum_probs=136.2
Q ss_pred EEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccc
Q 003878 512 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 591 (789)
Q Consensus 512 ~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~ 591 (789)
.+...|| .+|.+...- +.|.||++||..+.... |. .....|. +||.|+.+|+||.|.....
T Consensus 6 ~~~~~~g-~~l~~~~~g--------~~~~vv~lHG~~~~~~~--~~-~~~~~l~-~~~~vi~~d~~G~G~S~~~------ 66 (262)
T 3r0v_A 6 TVPSSDG-TPIAFERSG--------SGPPVVLVGGALSTRAG--GA-PLAERLA-PHFTVICYDRRGRGDSGDT------ 66 (262)
T ss_dssp EEECTTS-CEEEEEEEE--------CSSEEEEECCTTCCGGG--GH-HHHHHHT-TTSEEEEECCTTSTTCCCC------
T ss_pred eEEcCCC-cEEEEEEcC--------CCCcEEEECCCCcChHH--HH-HHHHHHh-cCcEEEEEecCCCcCCCCC------
Confidence 3566789 888765432 24789999998765432 33 3456677 8999999999998764321
Q ss_pred ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccccc---------
Q 003878 592 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT--------- 662 (789)
Q Consensus 592 ~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~--------- 662 (789)
...+++|+.+.+..+++. .+ +++.++|+|+||.+++.++.++| +++++|+..|...........
T Consensus 67 ---~~~~~~~~~~~~~~~~~~--l~-~~~~l~G~S~Gg~ia~~~a~~~p-~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 139 (262)
T 3r0v_A 67 ---PPYAVEREIEDLAAIIDA--AG-GAAFVFGMSSGAGLSLLAAASGL-PITRLAVFEPPYAVDDSRPPVPPDYQTRLD 139 (262)
T ss_dssp ---SSCCHHHHHHHHHHHHHH--TT-SCEEEEEETHHHHHHHHHHHTTC-CEEEEEEECCCCCCSTTSCCCCTTHHHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHh--cC-CCeEEEEEcHHHHHHHHHHHhCC-CcceEEEEcCCcccccccchhhhHHHHHHH
Confidence 134566776666666655 23 69999999999999999999999 999999988866543211000
Q ss_pred ----C------Cccchhh-cCCCCcHHHHHHHHhc------------------------CcccCCCCCCCCCCCCCCCCC
Q 003878 663 ----I------GHAWVSD-FGCSEEEEEFYWLIKY------------------------SPLHNVRRPWEQNPDKPFQYP 707 (789)
Q Consensus 663 ----~------~~~~~~e-~g~p~~~~~~~~l~~~------------------------sP~~~v~~~~~~~~~~~~~~p 707 (789)
. ...+... .+.+ ++..+.+... .+...+.++ ..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~ 207 (262)
T 3r0v_A 140 ALLAEGRRGDAVTYFMTEGVGVP--PDLVAQMQQAPMWPGMEAVAHTLPYDHAVMGDNTIPTARFASI----------SI 207 (262)
T ss_dssp HHHHTTCHHHHHHHHHHHTSCCC--HHHHHHHHTSTTHHHHHHTGGGHHHHHHHHTTSCCCHHHHTTC----------CS
T ss_pred HHhhccchhhHHHHHhhcccCCC--HHHHHHHHhhhcccchHHHHhhhhhhhhhhhcCCCCHHHcCcC----------CC
Confidence 0 0001111 1111 1111111110 112223333 67
Q ss_pred eEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 708 STLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 708 p~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
|+|+++|++|..+|+..+.++.+.+.. .++.+++++||.. . ..+..+.+.+||.
T Consensus 208 P~lii~G~~D~~~~~~~~~~~~~~~~~--------------~~~~~~~~~gH~~---~--p~~~~~~i~~fl~ 261 (262)
T 3r0v_A 208 PTLVMDGGASPAWIRHTAQELADTIPN--------------ARYVTLENQTHTV---A--PDAIAPVLVEFFT 261 (262)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHHSTT--------------EEEEECCCSSSSC---C--HHHHHHHHHHHHC
T ss_pred CEEEEeecCCCCCCHHHHHHHHHhCCC--------------CeEEEecCCCccc---C--HHHHHHHHHHHHh
Confidence 999999999999998888777766532 4789999999942 1 2345567777774
|
| >3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=9.4e-14 Score=154.01 Aligned_cols=249 Identities=12% Similarity=-0.023 Sum_probs=154.5
Q ss_pred CCcEEEEEEecCC--C-ceEEEEEEEecCCCCCCCCccEEEEEcCCCCccC--CCC----------------CC-HHHHH
Q 003878 505 EFHVHQVFVPSKD--G-STKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV--TPS----------------FS-VSRTI 562 (789)
Q Consensus 505 ~~~~~~~~~~s~d--g-~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~--~~~----------------~~-~~~~~ 562 (789)
.....++.|.+.| | ++.+.+.++.|++. .++.|+|.|.||-.+... .|+ +. .....
T Consensus 72 ~~~a~ri~Y~std~~G~p~~~~gtv~~P~~~--~~~~pvvs~~hgt~g~~~~CaPS~~~~~~~~~~~~~~~~~e~~~~~~ 149 (462)
T 3guu_A 72 NAASFQLQYRTTNTQNEAVADVATVWIPAKP--ASPPKIFSYQVYEDATALDCAPSYSYLTGLDQPNKVTAVLDTPIIIG 149 (462)
T ss_dssp TCEEEEEEEEEECTTSCEEEEEEEEEECSSC--CSSCEEEEEECCCCCCSGGGCHHHHHBSCSCCTTGGGGSTHHHHHHH
T ss_pred CceEEEEEEEEECCCCCEEEEEEEEEecCCC--CCCCcEEEEeCCcccCCCCcCCccccccCCCccccchhhhhHHHHHH
Confidence 4467778777764 4 23477889999874 345899999999755321 111 11 12345
Q ss_pred H-HHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC--
Q 003878 563 L-MRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR-- 639 (789)
Q Consensus 563 ~-l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-- 639 (789)
+ ++ +||+|+++|++|.|. .|... ... .....|.+.++..+. +.....+++++|+|+||..+++++...
T Consensus 150 ~~l~-~G~~Vv~~Dy~G~G~---~y~~~-~~~--~~~vlD~vrAa~~~~--~~~~~~~v~l~G~S~GG~aal~aa~~~~~ 220 (462)
T 3guu_A 150 WALQ-QGYYVVSSDHEGFKA---AFIAG-YEE--GMAILDGIRALKNYQ--NLPSDSKVALEGYSGGAHATVWATSLAES 220 (462)
T ss_dssp HHHH-TTCEEEEECTTTTTT---CTTCH-HHH--HHHHHHHHHHHHHHT--TCCTTCEEEEEEETHHHHHHHHHHHHHHH
T ss_pred HHHh-CCCEEEEecCCCCCC---cccCC-cch--hHHHHHHHHHHHHhc--cCCCCCCEEEEeeCccHHHHHHHHHhChh
Confidence 5 55 999999999999774 22111 000 112334444444443 333357999999999999999887754
Q ss_pred --CC-ceeEEEecCCcccccccccccCCcc---------------------chhhcCCC---------------------
Q 003878 640 --PD-LFGCALAHVGVMDMLRYHKFTIGHA---------------------WVSDFGCS--------------------- 674 (789)
Q Consensus 640 --pd-~f~a~v~~~p~~d~~~~~~~~~~~~---------------------~~~e~g~p--------------------- 674 (789)
|+ .++++++..+..|+........+.. +..++-+|
T Consensus 221 yapel~~~g~~~~~~p~dl~~~~~~~~~~~~~g~~~~~l~Gl~~~yP~l~~~l~~~lt~~g~~~~~~~~~~~~C~~~~~~ 300 (462)
T 3guu_A 221 YAPELNIVGASHGGTPVSAKDTFTFLNGGPFAGFALAGVSGLSLAHPDMESFIEARLNAKGQRTLKQIRGRGFCLPQVVL 300 (462)
T ss_dssp HCTTSEEEEEEEESCCCBHHHHHHHHTTSTTHHHHHHHHHHHHHHCHHHHHHHHTTBCHHHHHHHHHHTSTTCCHHHHHH
T ss_pred hcCccceEEEEEecCCCCHHHHHHHhccchhHHHHHHHHHhHHhhCcchhHHHHHHhCHHHHHHHHHHHhcCcchHHHHH
Confidence 44 5888888888777643321000000 00111111
Q ss_pred -----------------CcHHHHHHHHhcCccc-CCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhh
Q 003878 675 -----------------EEEEEFYWLIKYSPLH-NVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVL 736 (789)
Q Consensus 675 -----------------~~~~~~~~l~~~sP~~-~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~ 736 (789)
.++...+.+.+.+.-. .... .......|+||+||.+|.+||+.++.++++++++.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~lg~~~~~~------g~~~~~~PvlI~hG~~D~vVP~~~s~~l~~~l~~~- 373 (462)
T 3guu_A 301 TYPFLNVFSLVNDTNLLNEAPIASILKQETVVQAEASY------TVSVPKFPRFIWHAIPDEIVPYQPAATYVKEQCAK- 373 (462)
T ss_dssp HCTTCCGGGGBSCTTGGGSTTHHHHHHHSBCCTTTCSS------CCCCCCSEEEEEEETTCSSSCHHHHHHHHHHHHHT-
T ss_pred hhccCCHHHHcCCCccccCHHHHHHHHhhccccccccc------CCCCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHc-
Confidence 1111112222211100 0000 01124679999999999999999999999999988
Q ss_pred ccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 737 CTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 737 ~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
|.++++++|++++|+... .....++++||.+++..
T Consensus 374 ---------G~~V~~~~y~~~~H~~~~-----~~~~~d~l~WL~~r~~G 408 (462)
T 3guu_A 374 ---------GANINFSPYPIAEHLTAE-----IFGLVPSLWFIKQAFDG 408 (462)
T ss_dssp ---------TCEEEEEEESSCCHHHHH-----HHTHHHHHHHHHHHHHT
T ss_pred ---------CCCeEEEEECcCCccCch-----hhhHHHHHHHHHHHhCC
Confidence 889999999999998642 23467889999998754
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.2e-14 Score=154.16 Aligned_cols=313 Identities=11% Similarity=0.022 Sum_probs=185.1
Q ss_pred CceEeCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEE
Q 003878 85 APFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMR 164 (789)
Q Consensus 85 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~d 164 (789)
...++|.+++|.....+.. .||+.+..+++.+.|..... .....+.|||||++|||+.... +|+++|
T Consensus 42 ~~SpdG~~l~~~~~~~g~~--~l~~~d~~~~~~~~l~~~~~------~~~~~~~~spdg~~l~~~~~~~-----~l~~~d 108 (396)
T 3c5m_A 42 CFTQDGKKLLFAGDFDGNR--NYYLLNLETQQAVQLTEGKG------DNTFGGFISTDERAFFYVKNEL-----NLMKVD 108 (396)
T ss_dssp CBCTTSCEEEEEECTTSSC--EEEEEETTTTEEEECCCSSC------BCTTTCEECTTSSEEEEEETTT-----EEEEEE
T ss_pred cCCCCCCEEEEEEecCCCc--eEEEEECCCCcEEEeecCCC------CccccceECCCCCEEEEEEcCC-----cEEEEE
Confidence 3456899999988764443 47887755555444433221 1112367999999999987532 699999
Q ss_pred cCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEe
Q 003878 165 IEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTH 244 (789)
Q Consensus 165 l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wsp 244 (789)
+.+++.... ... ...+.|+++ .++|.+. .+...+|. ..+.|+|
T Consensus 109 ~~~~~~~~~--~~~----------------~~~~~~~g~-----------~l~~~~~-~~~~~~~~-------~~~~~sp 151 (396)
T 3c5m_A 109 LETLEEQVI--YTV----------------DEEWKGYGT-----------WVANSDC-TKLVGIEI-------LKRDWQP 151 (396)
T ss_dssp TTTCCEEEE--EEC----------------CTTEEEEEE-----------EEECTTS-SEEEEEEE-------EGGGCCC
T ss_pred CCCCCcEEE--Eec----------------ccccCCCCC-----------EEEeccC-Cccccccc-------cccccCC
Confidence 999865421 111 001223332 2333322 22223332 2356778
Q ss_pred CCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEec-CCcEEEEEEEcCCC
Q 003878 245 DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE-DGQYLVMCIEENCD 323 (789)
Q Consensus 245 Dg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~ 323 (789)
||+.+++..... ......|+++++.++.. ..+.... ..+..+.||| ||++|++.......
T Consensus 152 dg~~~~~~~~~~--------------~~~~~~l~~~d~~~g~~--~~~~~~~---~~~~~~~~sp~dg~~l~~~~~~~~~ 212 (396)
T 3c5m_A 152 LTSWEKFAEFYH--------------TNPTCRLIKVDIETGEL--EVIHQDT---AWLGHPIYRPFDDSTVGFCHEGPHD 212 (396)
T ss_dssp CCSHHHHHHHHH--------------TCCCEEEEEEETTTCCE--EEEEEES---SCEEEEEEETTEEEEEEEEECSCSS
T ss_pred CCcceeeeeecc--------------CCCcceEEEEECCCCcE--EeeccCC---cccccceECCCCCCEEEEEecCCCC
Confidence 887776543100 12345699999876543 2333322 2355789999 89999888642211
Q ss_pred -CceEEEEEECCCCCCCcccccccCCCCccEeeecc---ccceeEEEecCCCEEEEEECCCC-CCceEEEEECCCCCCeE
Q 003878 324 -PVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG---FDAQYEVIANDDTVFTFLTNKDA-PKYKIIRVDLKEPNDWF 398 (789)
Q Consensus 324 -~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~s~dG~~l~~~tn~~~-~~~~L~~~dl~~~~~~~ 398 (789)
...+||+++++++. ...+... .......|+|||+.|++.++..+ ....|+++|+++++ .+
T Consensus 213 ~~~~~l~~~d~~~~~--------------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~-~~ 277 (396)
T 3c5m_A 213 LVDARMWLVNEDGSN--------------VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE-NE 277 (396)
T ss_dssp SCSCCCEEEETTSCC--------------CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC-EE
T ss_pred CCCceEEEEECCCCc--------------eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC-eE
Confidence 12579999987642 1222221 11223469999999988876532 22459999998876 44
Q ss_pred EeccCCCCceeeeEEEec-CCEEEEEEEe--------------CCeEEEEEEECCCCceeeecccCCe-----------e
Q 003878 399 EVIPEAERDVLESATAVN-LNQMIVSYLS--------------DVKYVLQIRDLKNGSLLHQLPIEIG-----------S 452 (789)
Q Consensus 399 ~l~~~~~~~~i~~v~~~~-~~~lv~~~~~--------------~g~~~L~~~dl~tG~~~~~l~~~~~-----------~ 452 (789)
.+.... . .. +.+++ ++.+++.... ++...|+++|+++|+. +.++.... .
T Consensus 278 ~l~~~~-~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~ 352 (396)
T 3c5m_A 278 EVMVMP-P--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDVLDGDRQIT 352 (396)
T ss_dssp EEEECC-S--EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCCBTTBSSTT
T ss_pred EeeeCC-C--CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEccCCCCccccccccccCC
Confidence 443222 1 22 66776 6666655332 2346899999987765 45543322 1
Q ss_pred EEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 453 VNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 453 v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
...+.+++|++.+++..+. ..+..+|.+++.+++
T Consensus 353 ~~~~~~s~dg~~l~~~s~~-~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 353 HPHPSFTPNDDGVLFTSDF-EGVPAIYIADVPESY 386 (396)
T ss_dssp CCCCEECTTSSEEEEEECT-TSSCEEEEEECCTTC
T ss_pred CCCceEccCCCeEEEEecC-CCCceEEEEEEcccc
Confidence 2345788999988876544 456789999998874
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A | Back alignment and structure |
|---|
Probab=99.56 E-value=6.3e-14 Score=145.51 Aligned_cols=221 Identities=18% Similarity=0.141 Sum_probs=129.2
Q ss_pred EecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccc
Q 003878 513 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 592 (789)
Q Consensus 513 ~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~ 592 (789)
++..|| .+|.+... ++.|.||++||..+... .|... ...|.++||.|+++|+||.|.....
T Consensus 3 ~~~~~g-~~l~y~~~--------G~g~~vvllHG~~~~~~--~w~~~-~~~l~~~g~~vi~~D~~G~G~S~~~------- 63 (271)
T 3ia2_A 3 FVAKDG-TQIYFKDW--------GSGKPVLFSHGWLLDAD--MWEYQ-MEYLSSRGYRTIAFDRRGFGRSDQP------- 63 (271)
T ss_dssp EECTTS-CEEEEEEE--------SSSSEEEEECCTTCCGG--GGHHH-HHHHHTTTCEEEEECCTTSTTSCCC-------
T ss_pred EEcCCC-CEEEEEcc--------CCCCeEEEECCCCCcHH--HHHHH-HHHHHhCCceEEEecCCCCccCCCC-------
Confidence 567899 88865543 23356889999766543 34443 3445558999999999998864321
Q ss_pred cCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh-CCCceeEEEecCCccccccccc---ccCCc---
Q 003878 593 AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ-RPDLFGCALAHVGVMDMLRYHK---FTIGH--- 665 (789)
Q Consensus 593 ~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~-~pd~f~a~v~~~p~~d~~~~~~---~~~~~--- 665 (789)
....+++++.+.+..+++. .+.+++.++|||+||.+++.++.+ .|++++++|+..+......... .....
T Consensus 64 -~~~~~~~~~a~d~~~~l~~--l~~~~~~lvGhS~GG~~~~~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 140 (271)
T 3ia2_A 64 -WTGNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVPLDVF 140 (271)
T ss_dssp -SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSBCBCBTTBTTSBCHHHH
T ss_pred -CCCCCHHHHHHHHHHHHHH--hCCCCceEEEEcccHHHHHHHHHHhCCcccceEEEEccCCccccCCCCCcccccHHHH
Confidence 1223455555544444443 234689999999999866665554 5999999998765432211000 00000
Q ss_pred ------------cchh-----hc----CCCCcHH----------------HHHHHHhc---CcccCCCCCCCCCCCCCCC
Q 003878 666 ------------AWVS-----DF----GCSEEEE----------------EFYWLIKY---SPLHNVRRPWEQNPDKPFQ 705 (789)
Q Consensus 666 ------------~~~~-----e~----g~p~~~~----------------~~~~l~~~---sP~~~v~~~~~~~~~~~~~ 705 (789)
.+.. .+ +....+. .+..+..+ +....+.++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i---------- 210 (271)
T 3ia2_A 141 ARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKI---------- 210 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCBCHHHHTTC----------
T ss_pred HHHHHHHHhhHHHHHHHhhHhhhccccccccCHHHHHHHHhhhhhccHHHHHHHHHHhhccCCcccccCC----------
Confidence 0000 00 0000110 00111111 111122333
Q ss_pred CCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 706 YPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 706 ~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
..|+|+++|++|..||+..+.++.+++.. ..++.+++++||....... .+..+.+.+||.
T Consensus 211 ~~P~Lvi~G~~D~~~p~~~~~~~~~~~~~-------------~~~~~~~~~~gH~~~~e~p--~~~~~~i~~Fl~ 270 (271)
T 3ia2_A 211 DVPTLVIHGDGDQIVPFETTGKVAAELIK-------------GAELKVYKDAPHGFAVTHA--QQLNEDLLAFLK 270 (271)
T ss_dssp CSCEEEEEETTCSSSCGGGTHHHHHHHST-------------TCEEEEETTCCTTHHHHTH--HHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCcCChHHHHHHHHHhCC-------------CceEEEEcCCCCcccccCH--HHHHHHHHHHhh
Confidence 68999999999999999886666554422 2478999999998743322 356667788874
|
| >3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-14 Score=149.80 Aligned_cols=222 Identities=12% Similarity=0.019 Sum_probs=137.9
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCc
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQ 596 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~ 596 (789)
+| .+|.+... ++.|+||++||..+.... |......++. +||.|+++|+||.|.... ....
T Consensus 17 ~g-~~l~~~~~--------g~~~~vv~~HG~~~~~~~--~~~~~~~l~~-~g~~v~~~d~~G~G~S~~--------~~~~ 76 (309)
T 3u1t_A 17 EG-ATIAYVDE--------GSGQPVLFLHGNPTSSYL--WRNIIPYVVA-AGYRAVAPDLIGMGDSAK--------PDIE 76 (309)
T ss_dssp TT-EEEEEEEE--------ECSSEEEEECCTTCCGGG--GTTTHHHHHH-TTCEEEEECCTTSTTSCC--------CSSC
T ss_pred CC-eEEEEEEc--------CCCCEEEEECCCcchhhh--HHHHHHHHHh-CCCEEEEEccCCCCCCCC--------CCcc
Confidence 78 77765543 235789999998765443 4433444566 899999999999875432 1124
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc---------------c
Q 003878 597 NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK---------------F 661 (789)
Q Consensus 597 ~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~---------------~ 661 (789)
.+++|+.+.+..+++. ...+++.++|||+||.+++.++.++|++++++|+..|......... .
T Consensus 77 ~~~~~~~~~~~~~~~~--~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (309)
T 3u1t_A 77 YRLQDHVAYMDGFIDA--LGLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVPPALPMPSYEAMGPQLGPLFRDL 154 (309)
T ss_dssp CCHHHHHHHHHHHHHH--HTCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEESCTTTCSBSCSGGGHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH--cCCCceEEEEeCcHHHHHHHHHHhChHhheEEEEeccCCCCccccccccccchhhhHHHHHH
Confidence 5667777766666654 2346899999999999999999999999999999887554320000 0
Q ss_pred cC----------Cccch----hh--cCCCCcHHHHHHHHh-----------------cCcc--------------cCCCC
Q 003878 662 TI----------GHAWV----SD--FGCSEEEEEFYWLIK-----------------YSPL--------------HNVRR 694 (789)
Q Consensus 662 ~~----------~~~~~----~e--~g~p~~~~~~~~l~~-----------------~sP~--------------~~v~~ 694 (789)
.. ...+. .. ......++..+.+.. .... ..+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (309)
T 3u1t_A 155 RTADVGEKMVLDGNFFVETILPEMGVVRSLSEAEMAAYRAPFPTRQSRLPTLQWPREVPIGGEPAFAEAEVLKNGEWLMA 234 (309)
T ss_dssp TSTTHHHHHHTTTCHHHHTHHHHTSCSSCCCHHHHHHHHTTCCSTGGGHHHHHHHHHSCBTTBSHHHHHHHHHHHHHHHH
T ss_pred hccchhhhhccccceehhhhcccccccccCCHHHHHHHHHhcCCccccchHHHHHHHhccccccchhhhhhhhhhhhccc
Confidence 00 00000 00 001111111111111 1000 00112
Q ss_pred CCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHH
Q 003878 695 PWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAAD 774 (789)
Q Consensus 695 ~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~ 774 (789)
+ ..|+|+++|++|..+|+..+.++.+.+.. ..+.+++++||...... ..+..+.
T Consensus 235 i----------~~P~l~i~G~~D~~~~~~~~~~~~~~~~~--------------~~~~~~~~~gH~~~~~~--p~~~~~~ 288 (309)
T 3u1t_A 235 S----------PIPKLLFHAEPGALAPKPVVDYLSENVPN--------------LEVRFVGAGTHFLQEDH--PHLIGQG 288 (309)
T ss_dssp C----------CSCEEEEEEEECSSSCHHHHHHHHHHSTT--------------EEEEEEEEESSCHHHHC--HHHHHHH
T ss_pred C----------CCCEEEEecCCCCCCCHHHHHHHHhhCCC--------------CEEEEecCCcccchhhC--HHHHHHH
Confidence 2 57999999999999999888787776543 25566689999754322 2356677
Q ss_pred HHHHHHHHhCCC
Q 003878 775 RYGFMAKMLGAS 786 (789)
Q Consensus 775 ~~~fl~~~l~~~ 786 (789)
+.+||.+..+..
T Consensus 289 i~~fl~~~~~~~ 300 (309)
T 3u1t_A 289 IADWLRRNKPHA 300 (309)
T ss_dssp HHHHHHHHCCCC
T ss_pred HHHHHHhcchhh
Confidence 899999886543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.56 E-value=9e-12 Score=136.35 Aligned_cols=320 Identities=12% Similarity=0.039 Sum_probs=194.1
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccccee
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFF 213 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 213 (789)
+..+++||||++|+++....| +|++||+++++.+.. +... +-..+..+.|+++
T Consensus 34 ~~~~~~s~dg~~l~~~~~~d~----~i~v~d~~~~~~~~~-~~~~------------~~v~~~~~spdg~---------- 86 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAHSN----DVSIIDTATNNVIAT-VPAG------------SSPQGVAVSPDGK---------- 86 (391)
T ss_dssp EEEEEECTTSSEEEEEEGGGT----EEEEEETTTTEEEEE-EECS------------SSEEEEEECTTSS----------
T ss_pred cceEEECCCCCEEEEECCCCC----eEEEEECCCCeEEEE-EECC------------CCccceEECCCCC----------
Confidence 578899999999877654333 799999999976531 1110 0012233446664
Q ss_pred eEEEeeeccccceeeeeeec---------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCC
Q 003878 214 FFYLFSLVKSTIYSFWSVVS---------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT 284 (789)
Q Consensus 214 ~~~~~~s~~~g~~~l~~~~~---------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~ 284 (789)
.+++.+..++...+|.+.. .....+++|+|||+.|+++.. ....|+++++.+
T Consensus 87 -~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------------------~~~~v~~~d~~~ 147 (391)
T 1l0q_A 87 -QVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNN------------------GDKTVSVINTVT 147 (391)
T ss_dssp -EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEET------------------TTTEEEEEETTT
T ss_pred -EEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeC------------------CCCEEEEEECCC
Confidence 3444455667777776543 222367899999999988743 234699999876
Q ss_pred CCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeE
Q 003878 285 KQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE 364 (789)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 364 (789)
+.. ...+.... ....+.|+|||++|++.... ...|+++|+.++. ....+.........
T Consensus 148 ~~~--~~~~~~~~---~~~~~~~~~dg~~l~~~~~~----~~~v~~~d~~~~~-------------~~~~~~~~~~~~~~ 205 (391)
T 1l0q_A 148 KAV--INTVSVGR---SPKGIAVTPDGTKVYVANFD----SMSISVIDTVTNS-------------VIDTVKVEAAPSGI 205 (391)
T ss_dssp TEE--EEEEECCS---SEEEEEECTTSSEEEEEETT----TTEEEEEETTTTE-------------EEEEEECSSEEEEE
T ss_pred CcE--EEEEecCC---CcceEEECCCCCEEEEEeCC----CCEEEEEECCCCe-------------EEEEEecCCCccce
Confidence 532 22333222 23578999999999776532 3569999998742 11111111111223
Q ss_pred EEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCCCcee
Q 003878 365 VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSLL 443 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~tG~~~ 443 (789)
.|+|+|+.+++.... ..+..|..+|+.+++ ....++.. ..+..+.+++++ .+++....++ .|++||+.+|+..
T Consensus 206 ~~~~~g~~l~~~~~~-~~~~~v~~~d~~~~~-~~~~~~~~--~~~~~~~~s~dg~~l~~s~~~d~--~v~v~d~~~~~~~ 279 (391)
T 1l0q_A 206 AVNPEGTKAYVTNVD-KYFNTVSMIDTGTNK-ITARIPVG--PDPAGIAVTPDGKKVYVALSFXN--TVSVIDTATNTIT 279 (391)
T ss_dssp EECTTSSEEEEEEEC-SSCCEEEEEETTTTE-EEEEEECC--SSEEEEEECTTSSEEEEEETTTT--EEEEEETTTTEEE
T ss_pred EECCCCCEEEEEecC-cCCCcEEEEECCCCe-EEEEEecC--CCccEEEEccCCCEEEEEcCCCC--EEEEEECCCCcEE
Confidence 489999998877642 245789999998875 33333333 235678888754 4656665565 7999999988765
Q ss_pred eecccCCee------EEE-----------eecccCCcEEE----EEEcCCCCCcEEEEEECCCCCceEEEeeeccCCCCC
Q 003878 444 HQLPIEIGS------VNA-----------ISARREDSVVF----ISFTSFLIPGIVYQCNLKTETPEMKIFRETIIPGFD 502 (789)
Q Consensus 444 ~~l~~~~~~------v~~-----------~s~s~d~~~l~----~~~ss~~~P~~ly~~dl~tg~~~~~~l~~~~~~~~~ 502 (789)
..+...... +.. ++......... +.+.+.......+.|++.+|. ......+ ...|.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~--~~~~~~~-~~~~~ 356 (391)
T 1l0q_A 280 ATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGS--SSKKQNP-THTYS 356 (391)
T ss_dssp EEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSC--EECSSSC-EECCS
T ss_pred EEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCc--ccCcCCC-eEEeC
Confidence 555432111 110 11111111110 223455567789999998884 3222211 12466
Q ss_pred CCCCcEEEEEEecCCCce--EEEEEEEecCC
Q 003878 503 RSEFHVHQVFVPSKDGST--KIPMFIVSKKN 531 (789)
Q Consensus 503 ~~~~~~~~~~~~s~dg~~--~i~~~l~~p~~ 531 (789)
+...-...+++++.+| . +++...+++++
T Consensus 357 ~~g~y~~~~~~~~~~g-~~~~~~~~~v~~~~ 386 (391)
T 1l0q_A 357 ETGIYTVRLTVSNSNG-TDSQISTVNVVLKG 386 (391)
T ss_dssp SCEEEEEEEEEEETTE-EEEEEEEEEEECTT
T ss_pred CCceEEEEEEEECCCC-cEEEEEEEEEEcCC
Confidence 6666667788888998 5 68888888765
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-13 Score=152.74 Aligned_cols=229 Identities=13% Similarity=0.057 Sum_probs=138.9
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHh
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 588 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~ 588 (789)
..+.+.+.|| .+|.+... +..|+||++||+.+.... |... ...|.++||.|+++|+||.|....
T Consensus 4 i~~~~~~~dG-~~l~y~~~--------G~gp~VV~lHG~~~~~~~--~~~l-~~~La~~Gy~Vi~~D~rG~G~S~~---- 67 (456)
T 3vdx_A 4 ITVGQENSTS-IDLYYEDH--------GTGVPVVLIHGFPLSGHS--WERQ-SAALLDAGYRVITYDRRGFGQSSQ---- 67 (456)
T ss_dssp EEEEEETTEE-EEEEEEEE--------SSSEEEEEECCTTCCGGG--GTTH-HHHHHHHTEEEEEECCTTSTTSCC----
T ss_pred EeecccccCC-eEEEEEEe--------CCCCEEEEECCCCCcHHH--HHHH-HHHHHHCCcEEEEECCCCCCCCCC----
Confidence 3455667788 77764322 245899999998765433 4433 344544899999999999876432
Q ss_pred cccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-CCceeEEEecCCcccccccccccC-Cc-
Q 003878 589 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR-PDLFGCALAHVGVMDMLRYHKFTI-GH- 665 (789)
Q Consensus 589 ~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-pd~f~a~v~~~p~~d~~~~~~~~~-~~- 665 (789)
.....+++++.+.+..+++. .+.++++++|+|+||.+++.++.++ |++++++|+..|............ +.
T Consensus 68 ----~~~~~s~~~~a~dl~~~l~~--l~~~~v~LvGhS~GG~ia~~~aa~~~p~~v~~lVli~~~~~~~~~~~~~~~~~~ 141 (456)
T 3vdx_A 68 ----PTTGYDYDTFAADLNTVLET--LDLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEPFLLKTDDNPDGAA 141 (456)
T ss_dssp ----CSSCCSHHHHHHHHHHHHHH--HTCCSEEEEEEGGGGHHHHHHHHHHCSSSEEEEEEESCCCSCCBCCSSCCSCSB
T ss_pred ----CCCCCCHHHHHHHHHHHHHH--hCCCCeEEEEECHHHHHHHHHHHhcchhheeEEEEeCCcccccccccccccccc
Confidence 11233455555555444443 2456899999999999888887776 999999999988765322110000 00
Q ss_pred -----------------cc----hhh-cCC------CCcHHHHHHHH----------------hc--CcccCCCCCCCCC
Q 003878 666 -----------------AW----VSD-FGC------SEEEEEFYWLI----------------KY--SPLHNVRRPWEQN 699 (789)
Q Consensus 666 -----------------~~----~~e-~g~------p~~~~~~~~l~----------------~~--sP~~~v~~~~~~~ 699 (789)
.+ ... +.. ...++...... .+ +....+..+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i---- 217 (456)
T 3vdx_A 142 PQEFFDGIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPRI---- 217 (456)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHTTTTTSBTTTBCHHHHHHHHHHHHTSCTTHHHHGGGGTTCCCTTTSTTC----
T ss_pred hHHHHHHHHHhhhccchHHHHHHHHHHhcccccccccccHHHHHHHhhhccccchhhhhhhhhhhhhhHHHHhhhC----
Confidence 00 000 010 11111111110 00 111222332
Q ss_pred CCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHH
Q 003878 700 PDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFM 779 (789)
Q Consensus 700 ~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl 779 (789)
..|+|+++|.+|..||+.+..+.++++ ...+++.+++++||....... ....+.+.+||
T Consensus 218 ------~~PvLiI~G~~D~~vp~~~~~~~l~~~-------------~~~~~~~~i~gagH~~~~e~p--~~v~~~I~~FL 276 (456)
T 3vdx_A 218 ------DVPALILHGTGDRTLPIENTARVFHKA-------------LPSAEYVEVEGAPHGLLWTHA--EEVNTALLAFL 276 (456)
T ss_dssp ------CSCCEEEEETTCSSSCGGGTHHHHHHH-------------CTTSEEEEETTCCSCTTTTTH--HHHHHHHHHHH
T ss_pred ------CCCEEEEEeCCCCCcCHHHHHHHHHHH-------------CCCceEEEeCCCCCcchhhCH--HHHHHHHHHHH
Confidence 689999999999999998444443332 123478999999998765333 46677888999
Q ss_pred HHHhC
Q 003878 780 AKMLG 784 (789)
Q Consensus 780 ~~~l~ 784 (789)
.+.++
T Consensus 277 ~~~l~ 281 (456)
T 3vdx_A 277 AKALE 281 (456)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 88763
|
| >1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.6e-14 Score=150.68 Aligned_cols=206 Identities=8% Similarity=-0.043 Sum_probs=137.2
Q ss_pred eEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCC----CHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcc-----
Q 003878 520 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSF----SVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGG----- 590 (789)
Q Consensus 520 ~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~----~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~----- 590 (789)
..+.+.++.|.+ .+.|.||++||+......... ...+...|.++||.|+++|+||.|..+..-....
T Consensus 48 ~~~~~~~~~p~~----~~~~~vvl~HG~g~~~~~~~~~pdg~~~~~~~l~~~G~~V~~~D~~G~G~S~~~~~~~~~~~~~ 123 (328)
T 1qlw_A 48 DQMYVRYQIPQR----AKRYPITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKLG 123 (328)
T ss_dssp SCEEEEEEEETT----CCSSCEEEECCTTCCGGGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHHHTT
T ss_pred eeEEEEEEccCC----CCCccEEEEeCCCCCCCccccCCCCchHHHHHHHHCCCeEEEECCCCcccCCCCCccccccccc
Confidence 345566666764 133679999998654432221 0123445555999999999999776543211000
Q ss_pred -----------------------cc-cC---------CcchHHH------------------HHHHHHHHHHcCCCCCCc
Q 003878 591 -----------------------AL-AK---------KQNCFDD------------------FISASEYLISAGYTQSRK 619 (789)
Q Consensus 591 -----------------------~~-~~---------~~~~~~D------------------~~~~~~~L~~~~~~d~~~ 619 (789)
.. .+ ....+++ +.+++..+++.- ++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~ 199 (328)
T 1qlw_A 124 KAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIKL----DG 199 (328)
T ss_dssp SSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHHH----TS
T ss_pred ccCcccccceeccchhhhhhHhhhcccCCccCcCccCCHHHHHHHHHHhCccccccCCChhHHHHHHHHHHHHh----CC
Confidence 00 00 0001333 555566666541 38
Q ss_pred EEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCC
Q 003878 620 LCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQN 699 (789)
Q Consensus 620 i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~ 699 (789)
++++|||+||.+++.++.++|++++++|+..|... .+ + ....+.
T Consensus 200 ~~lvGhS~GG~~a~~~a~~~p~~v~~~v~~~p~~~------------------~~-------------~-~~~~~~---- 243 (328)
T 1qlw_A 200 TVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGEC------------------PK-------------P-EDVKPL---- 243 (328)
T ss_dssp EEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCC------------------CC-------------G-GGCGGG----
T ss_pred ceEEEECcccHHHHHHHHhChhheeEEEEeCCCCC------------------CC-------------H-HHHhhc----
Confidence 99999999999999999999999999999887430 00 0 011111
Q ss_pred CCCCCCCCeEEEEecCCCCCCCc-----HHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCC-----cCCCCchhhHH
Q 003878 700 PDKPFQYPSTLLLTADHDDRVVP-----LHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAG-----HGVGLPTQKMI 769 (789)
Q Consensus 700 ~~~~~~~pp~Li~~g~~D~~V~~-----~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~g-----H~~~~~~~~~~ 769 (789)
...|+|+++|++|..+|+ .++.++++.++.. |..+++.+++++| |......+ ..
T Consensus 244 -----~~~PvLii~G~~D~~~p~~~~~~~~~~~~~~~l~~~----------g~~~~~~~~~~~gi~G~~H~~~~~~~-~~ 307 (328)
T 1qlw_A 244 -----TSIPVLVVFGDHIEEFPRWAPRLKACHAFIDALNAA----------GGKGQLMSLPALGVHGNSHMMMQDRN-NL 307 (328)
T ss_dssp -----TTSCEEEEECSSCTTCTTTHHHHHHHHHHHHHHHHT----------TCCEEEEEGGGGTCCCCCTTGGGSTT-HH
T ss_pred -----cCCCEEEEeccCCccccchhhHHHHHHHHHHHHHHh----------CCCceEEEcCCCCcCCCcccchhccC-HH
Confidence 247999999999999997 8899999999887 7889999999666 98755442 24
Q ss_pred HHHHHHHHHHHHHhCC
Q 003878 770 DEAADRYGFMAKMLGA 785 (789)
Q Consensus 770 ~~~~~~~~fl~~~l~~ 785 (789)
+..+.+.+||.+++..
T Consensus 308 ~~~~~i~~fl~~~~~~ 323 (328)
T 1qlw_A 308 QVADLILDWIGRNTAK 323 (328)
T ss_dssp HHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHhcccC
Confidence 6677899999988753
|
| >3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.3e-14 Score=154.67 Aligned_cols=249 Identities=11% Similarity=-0.003 Sum_probs=146.5
Q ss_pred EEEecCCCceEEEEEEEecCCCCC-CCCccEEEEEcCCCCccCC----------CC-CCHHH--HHHHHcCCeEEEEEee
Q 003878 511 VFVPSKDGSTKIPMFIVSKKNIKL-DGSHPCLLYGYGGFNISVT----------PS-FSVSR--TILMRHLGAVFCIANI 576 (789)
Q Consensus 511 ~~~~s~dg~~~i~~~l~~p~~~~~-~~~~P~ll~~hGg~~~~~~----------~~-~~~~~--~~~l~~~G~~v~~~~~ 576 (789)
-.++..+| ..|...|.+..--.+ ..+.|+||++||..+.... .. |.... ...+..+||.|+++|.
T Consensus 15 ~~~~~~~g-~~l~~~i~y~~~g~~~~~~~p~vll~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~ 93 (377)
T 3i1i_A 15 KEYTFENG-RTIPVQMGYETYGTLNRERSNVILICHYFSATSHAAGKYTAHDEESGWWDGLIGPGKAIDTNQYFVICTDN 93 (377)
T ss_dssp EEEECTTS-CEEEEEEEEEEESCCCTTCCCEEEEECCTTCCSCCSSCSSTTCSSCCTTTTTEETTSSEETTTCEEEEECC
T ss_pred cceeecCC-CEeeeeEEEEeecccCCCCCCEEEEeccccCcchhccccccccccccchhhhcCCCCccccccEEEEEecc
Confidence 34666777 666444444331111 2346999999998776544 11 22111 0223348999999999
Q ss_pred cCCCC-----CChhHHhcccc--------cCCcchHHHHHHHHHHHHHcCCCCCCcEE-EEeeChHHHHHHHHHHhCCCc
Q 003878 577 RGGGE-----YGEEWHKGGAL--------AKKQNCFDDFISASEYLISAGYTQSRKLC-IEGGSNGGLLVGACINQRPDL 642 (789)
Q Consensus 577 RG~g~-----~g~~~~~~~~~--------~~~~~~~~D~~~~~~~L~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~pd~ 642 (789)
||.|. +|..-...... .....+++|+.+.+..+++. ...+++. ++|||+||.+++.++.++|++
T Consensus 94 ~G~G~S~G~~~g~~g~~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~l~~--l~~~~~~ilvGhS~Gg~ia~~~a~~~p~~ 171 (377)
T 3i1i_A 94 LCNVQVKNPHVITTGPKSINPKTGDEYAMDFPVFTFLDVARMQCELIKD--MGIARLHAVMGPSAGGMIAQQWAVHYPHM 171 (377)
T ss_dssp TTCSCTTSTTCCCCSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHH--TTCCCBSEEEEETHHHHHHHHHHHHCTTT
T ss_pred cccccccCCCcccCCCCCCCCCCCCcccCCCCCCCHHHHHHHHHHHHHH--cCCCcEeeEEeeCHhHHHHHHHHHHChHH
Confidence 97643 11100000000 11134778888888888765 3445785 999999999999999999999
Q ss_pred eeEEEe-cCCccccccc--------------cc--------------------------ccCCccchhhcCC--------
Q 003878 643 FGCALA-HVGVMDMLRY--------------HK--------------------------FTIGHAWVSDFGC-------- 673 (789)
Q Consensus 643 f~a~v~-~~p~~d~~~~--------------~~--------------------------~~~~~~~~~e~g~-------- 673 (789)
++++|+ ..+....... .. ......+...++.
T Consensus 172 v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (377)
T 3i1i_A 172 VERMIGVITNPQNPIITSVNVAQNAIEAIRLDPSWKGGKYGEEQPMKGLQLANRMMFMNAFDEHFYETTYPRNSIEVEPY 251 (377)
T ss_dssp BSEEEEESCCSBCCHHHHHHTTHHHHHHHHHSGGGGGGCCTTSCCHHHHHHHHHHHHTTSSCHHHHHHHSCCCSSCCGGG
T ss_pred HHHhcccCcCCCcCCchhhHHHHHHHHHHhcCCCccCCccccCCccchHHHHHHHHhhhcCCHHHHHHHhhhhhcccccc
Confidence 999998 5443320000 00 0000000011111
Q ss_pred ----------------------CCcHHHHH----HHHhcCc-------ccCCCCCCCCCCCCCCCCCeEEEEecCCCCCC
Q 003878 674 ----------------------SEEEEEFY----WLIKYSP-------LHNVRRPWEQNPDKPFQYPSTLLLTADHDDRV 720 (789)
Q Consensus 674 ----------------------p~~~~~~~----~l~~~sP-------~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V 720 (789)
..++..+. .+..+.+ ...+.++ ..|+|+++|++|..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~Pvlii~G~~D~~~ 321 (377)
T 3i1i_A 252 EKVSSLTSFEKEINKLTYRSIELVDANSWMYTAKAVLLHDIAHGFSSLEEALSNV----------EANVLMIPCKQDLLQ 321 (377)
T ss_dssp TCTTCCCHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHCBTTTTSSCHHHHHHTC----------CSEEEEECBTTCSSS
T ss_pred ccccchhHHHHHHHHHHhhhhcccCHHHHHHHHHHHhhcccccccCCHHHHHhhC----------CCCEEEEecCCcccc
Confidence 00111110 1111111 1112233 579999999999999
Q ss_pred CcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCC-CCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 721 VPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERK-AGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 721 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~-~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
|+..+.++++.++.. +..+++.++++ +||....... .+..+.+.+||.+++.
T Consensus 322 ~~~~~~~~~~~~~~~----------g~~~~~~~i~~~~gH~~~~e~p--~~~~~~i~~fl~~~~~ 374 (377)
T 3i1i_A 322 PSRYNYKMVDLLQKQ----------GKYAEVYEIESINGHMAGVFDI--HLFEKKVYEFLNRKVS 374 (377)
T ss_dssp CTHHHHHHHHHHHHT----------TCCEEECCBCCTTGGGHHHHCG--GGTHHHHHHHHHSCCS
T ss_pred CHHHHHHHHHHHHhc----------CCCceEEEcCCCCCCcchhcCH--HHHHHHHHHHHHhhhh
Confidence 999999999999875 56688999998 9997543222 2456678889987654
|
| >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.2e-14 Score=151.23 Aligned_cols=215 Identities=14% Similarity=0.026 Sum_probs=135.9
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCC
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 595 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~ 595 (789)
.+| .++.+... ++.|+||++||..+... .|. .....|+ .||.|+++|+||.|... ....
T Consensus 55 ~~~-~~~~~~~~--------g~~p~vv~lhG~~~~~~--~~~-~~~~~L~-~~~~v~~~D~~G~G~S~--------~~~~ 113 (314)
T 3kxp_A 55 IGR-ITLNVREK--------GSGPLMLFFHGITSNSA--VFE-PLMIRLS-DRFTTIAVDQRGHGLSD--------KPET 113 (314)
T ss_dssp CSS-CEEEEEEE--------CCSSEEEEECCTTCCGG--GGH-HHHHTTT-TTSEEEEECCTTSTTSC--------CCSS
T ss_pred ECC-EEEEEEec--------CCCCEEEEECCCCCCHH--HHH-HHHHHHH-cCCeEEEEeCCCcCCCC--------CCCC
Confidence 367 77766543 23689999999865543 333 3456676 58999999999987643 1223
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc------ccCCc----
Q 003878 596 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK------FTIGH---- 665 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~------~~~~~---- 665 (789)
...++|+.+.+..+++. .+.++++++|+|+||.+++.++.++|++++++|+..|...+..... .....
T Consensus 114 ~~~~~~~~~dl~~~l~~--l~~~~v~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (314)
T 3kxp_A 114 GYEANDYADDIAGLIRT--LARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPYIETEALDALEARVNAGSQLFE 191 (314)
T ss_dssp CCSHHHHHHHHHHHHHH--HTSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCTTCCHHHHHHHHHHTTTTCSCBS
T ss_pred CCCHHHHHHHHHHHHHH--hCCCCcEEEEECchHHHHHHHHHhChhheeEEEEeCCCCCCCcchhhHHHHHhhhchhhhc
Confidence 45667777777766655 2346999999999999999999999999999999877554321100 00000
Q ss_pred -------cchhhcCCCCcHHHHHHHHhc---------------------------CcccCCCCCCCCCCCCCCCCCeEEE
Q 003878 666 -------AWVSDFGCSEEEEEFYWLIKY---------------------------SPLHNVRRPWEQNPDKPFQYPSTLL 711 (789)
Q Consensus 666 -------~~~~e~g~p~~~~~~~~l~~~---------------------------sP~~~v~~~~~~~~~~~~~~pp~Li 711 (789)
.+...+.. ...+....+... +....+.++ ..|+|+
T Consensus 192 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----------~~P~Li 260 (314)
T 3kxp_A 192 DIKAVEAYLAGRYPN-IPADAIRIRAESGYQPVDGGLRPLASSAAMAQTARGLRSDLVPAYRDV----------TKPVLI 260 (314)
T ss_dssp SHHHHHHHHHHHSTT-SCHHHHHHHHHHSEEEETTEEEESSCHHHHHHHHHHTTSCCHHHHHHC----------CSCEEE
T ss_pred CHHHHHHHHHhhccc-CchHHHHHHhhhhhcccccccccccChhhhhhhccccCcchhhHhhcC----------CCCEEE
Confidence 00000000 011111111000 111222233 679999
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 712 LTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 712 ~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
++|++|..+|+..+.++.+.+.. +++.+++++||....... .+..+.+.+||.
T Consensus 261 i~G~~D~~~~~~~~~~~~~~~~~--------------~~~~~~~g~gH~~~~e~~--~~~~~~i~~fl~ 313 (314)
T 3kxp_A 261 VRGESSKLVSAAALAKTSRLRPD--------------LPVVVVPGADHYVNEVSP--EITLKAITNFID 313 (314)
T ss_dssp EEETTCSSSCHHHHHHHHHHCTT--------------SCEEEETTCCSCHHHHCH--HHHHHHHHHHHH
T ss_pred EecCCCccCCHHHHHHHHHhCCC--------------ceEEEcCCCCCcchhhCH--HHHHHHHHHHHh
Confidence 99999999999998888776643 268899999998643222 355667778875
|
| >3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-14 Score=146.57 Aligned_cols=117 Identities=15% Similarity=0.090 Sum_probs=84.7
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCc
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQ 596 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~ 596 (789)
+| .++.+... ++.|.||++||..+.... |.. ....|. .||.|+++|+||.|..... .....
T Consensus 11 ~~-~~~~y~~~--------g~~~~vv~~HG~~~~~~~--~~~-~~~~L~-~~~~vi~~d~~G~G~s~~~------~~~~~ 71 (278)
T 3oos_A 11 PR-GKFEYFLK--------GEGPPLCVTHLYSEYNDN--GNT-FANPFT-DHYSVYLVNLKGCGNSDSA------KNDSE 71 (278)
T ss_dssp TT-EEEEEEEE--------CSSSEEEECCSSEECCTT--CCT-TTGGGG-GTSEEEEECCTTSTTSCCC------SSGGG
T ss_pred CC-ceEEEEec--------CCCCeEEEEcCCCcchHH--HHH-HHHHhh-cCceEEEEcCCCCCCCCCC------CCccc
Confidence 66 66654322 245789999998765444 332 235566 5999999999998754321 11123
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccc
Q 003878 597 NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 654 (789)
Q Consensus 597 ~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d 654 (789)
.+++|+.+.+..+++. .+.+++.++|||+||.+++.++.++|++++++|+..|...
T Consensus 72 ~~~~~~~~~~~~~~~~--l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~ 127 (278)
T 3oos_A 72 YSMTETIKDLEAIREA--LYINKWGFAGHSAGGMLALVYATEAQESLTKIIVGGAAAS 127 (278)
T ss_dssp GSHHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSB
T ss_pred CcHHHHHHHHHHHHHH--hCCCeEEEEeecccHHHHHHHHHhCchhhCeEEEecCccc
Confidence 4567777777766665 2446899999999999999999999999999999998876
|
| >1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-13 Score=135.65 Aligned_cols=183 Identities=11% Similarity=0.003 Sum_probs=122.5
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
..|+||++||..+.... .|.......|.++||.|+.+|+|.++. .+++++.+.+..+++.-
T Consensus 3 g~p~vv~~HG~~~~~~~-~~~~~~~~~l~~~g~~v~~~d~~~~~~---------------~~~~~~~~~~~~~~~~~--- 63 (192)
T 1uxo_A 3 GTKQVYIIHGYRASSTN-HWFPWLKKRLLADGVQADILNMPNPLQ---------------PRLEDWLDTLSLYQHTL--- 63 (192)
T ss_dssp -CCEEEEECCTTCCTTS-TTHHHHHHHHHHTTCEEEEECCSCTTS---------------CCHHHHHHHHHTTGGGC---
T ss_pred CCCEEEEEcCCCCCcch-hHHHHHHHHHHhCCcEEEEecCCCCCC---------------CCHHHHHHHHHHHHHhc---
Confidence 35889999997665432 444444445645899999999993211 14666666666655542
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCC--ceeEEEecCCcccccccccccCCccchhhcC-CCCcHHHHHHHHhcCcccCCC
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPD--LFGCALAHVGVMDMLRYHKFTIGHAWVSDFG-CSEEEEEFYWLIKYSPLHNVR 693 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd--~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g-~p~~~~~~~~l~~~sP~~~v~ 693 (789)
.+++.++|+|+||.+++.++.++|+ +++++|+..|+........ .. ..|. .|.+.+ .+ .
T Consensus 64 ~~~~~l~G~S~Gg~~a~~~a~~~~~~~~v~~~v~~~~~~~~~~~~~-----~~-~~~~~~~~~~~---~~---------~ 125 (192)
T 1uxo_A 64 HENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPTLQ-----ML-DEFTQGSFDHQ---KI---------I 125 (192)
T ss_dssp CTTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTTCG-----GG-GGGTCSCCCHH---HH---------H
T ss_pred cCCEEEEEeCccHHHHHHHHHHhcccCCccEEEEeccCCCccccch-----hh-hhhhhcCCCHH---HH---------H
Confidence 5799999999999999999999999 9999999998765432211 00 1121 122211 11 1
Q ss_pred CCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHH
Q 003878 694 RPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAA 773 (789)
Q Consensus 694 ~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~ 773 (789)
+. .+|+|+++|++|..||+.++.++.+.+ .. ++.+++++||.+...... ...
T Consensus 126 ~~----------~~P~l~i~g~~D~~~~~~~~~~~~~~~-~~--------------~~~~~~~~gH~~~~~~~~---~~~ 177 (192)
T 1uxo_A 126 ES----------AKHRAVIASKDDQIVPFSFSKDLAQQI-DA--------------ALYEVQHGGHFLEDEGFT---SLP 177 (192)
T ss_dssp HH----------EEEEEEEEETTCSSSCHHHHHHHHHHT-TC--------------EEEEETTCTTSCGGGTCS---CCH
T ss_pred hh----------cCCEEEEecCCCCcCCHHHHHHHHHhc-Cc--------------eEEEeCCCcCcccccccc---cHH
Confidence 22 469999999999999999988887776 32 688999999987543221 122
Q ss_pred HHHHHHHHHhC
Q 003878 774 DRYGFMAKMLG 784 (789)
Q Consensus 774 ~~~~fl~~~l~ 784 (789)
.+.+|+.+.+.
T Consensus 178 ~~~~~l~~~l~ 188 (192)
T 1uxo_A 178 IVYDVLTSYFS 188 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35566665553
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=99.55 E-value=7.5e-15 Score=146.17 Aligned_cols=191 Identities=12% Similarity=0.005 Sum_probs=128.1
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHH-HHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCC
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVS-RTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 595 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~-~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~ 595 (789)
+| .+|.+..+.|++ .++.|+||++||+.+... .|... ....|.++||.|+.+|+||.|...... .. ..-
T Consensus 15 ~g-~~l~~~~~~p~~---~~~~~~vv~~hG~~~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~s~~~~---~~-~~~ 84 (210)
T 1imj_A 15 QG-QALFFREALPGS---GQARFSVLLLHGIRFSSE--TWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEAA---AP-API 84 (210)
T ss_dssp TT-EEECEEEEECSS---SCCSCEEEECCCTTCCHH--HHHHHTHHHHHHHTTCEEEEECCTTSGGGTTSC---CS-SCT
T ss_pred CC-eEEEEEEeCCCC---CCCCceEEEECCCCCccc--eeecchhHHHHHHCCCeEEEecCCCCCCCCCCC---Cc-chh
Confidence 88 999999998875 346799999999865533 23321 245566689999999999976432211 00 000
Q ss_pred cchH--HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCC
Q 003878 596 QNCF--DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGC 673 (789)
Q Consensus 596 ~~~~--~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~ 673 (789)
.... +|+.+.++.+ +.++++++|+|+||.+++.++.++|++++++|+..|..... +
T Consensus 85 ~~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~----------~------ 142 (210)
T 1imj_A 85 GELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDK----------I------ 142 (210)
T ss_dssp TSCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGG----------S------
T ss_pred hhcchHHHHHHHHHHh------CCCCeEEEEECchHHHHHHHHHhCccccceEEEeCCCcccc----------c------
Confidence 1111 4555555443 34689999999999999999999999999999998865310 0
Q ss_pred CCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEE
Q 003878 674 SEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRI 753 (789)
Q Consensus 674 p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~ 753 (789)
.... + ... ..|+|+++|++|. ++++.+.++ +.+ ...++.+
T Consensus 143 --~~~~---~---------~~~----------~~p~l~i~g~~D~-~~~~~~~~~-~~~--------------~~~~~~~ 182 (210)
T 1imj_A 143 --NAAN---Y---------ASV----------KTPALIVYGDQDP-MGQTSFEHL-KQL--------------PNHRVLI 182 (210)
T ss_dssp --CHHH---H---------HTC----------CSCEEEEEETTCH-HHHHHHHHH-TTS--------------SSEEEEE
T ss_pred --cchh---h---------hhC----------CCCEEEEEcCccc-CCHHHHHHH-hhC--------------CCCCEEE
Confidence 0011 1 122 5799999999999 987776655 332 2368899
Q ss_pred eCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 754 ERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 754 ~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
++++||....... ....+.+.+||.+
T Consensus 183 ~~~~~H~~~~~~~--~~~~~~i~~fl~~ 208 (210)
T 1imj_A 183 MKGAGHPCYLDKP--EEWHTGLLDFLQG 208 (210)
T ss_dssp ETTCCTTHHHHCH--HHHHHHHHHHHHT
T ss_pred ecCCCcchhhcCH--HHHHHHHHHHHHh
Confidence 9999998532222 2445667777754
|
| >3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=141.56 Aligned_cols=214 Identities=7% Similarity=-0.028 Sum_probs=130.8
Q ss_pred cEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCC
Q 003878 539 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSR 618 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~ 618 (789)
|.||++||..+.... |... ...|.++||.|+++|.||.|..... .....++++..+.+..+++.-. ..+
T Consensus 5 ~~vv~lHG~~~~~~~--~~~~-~~~l~~~g~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~l~~~l~~l~-~~~ 73 (258)
T 3dqz_A 5 HHFVLVHNAYHGAWI--WYKL-KPLLESAGHRVTAVELAASGIDPRP-------IQAVETVDEYSKPLIETLKSLP-ENE 73 (258)
T ss_dssp CEEEEECCTTCCGGG--GTTH-HHHHHHTTCEEEEECCTTSTTCSSC-------GGGCCSHHHHHHHHHHHHHTSC-TTC
T ss_pred CcEEEECCCCCcccc--HHHH-HHHHHhCCCEEEEecCCCCcCCCCC-------CCccccHHHhHHHHHHHHHHhc-ccC
Confidence 899999998765443 4433 4455558999999999998764321 1122456666666666665521 137
Q ss_pred cEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccc-------cCCccch-----------------------
Q 003878 619 KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKF-------TIGHAWV----------------------- 668 (789)
Q Consensus 619 ~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~-------~~~~~~~----------------------- 668 (789)
++.++|||+||.+++.++.++|++++++|+..|.......... .....|.
T Consensus 74 ~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3dqz_A 74 EVILVGFSFGGINIALAADIFPAKIKVLVFLNAFLPDTTHVPSHVLDKYMEMPGGLGDCEFSSHETRNGTMSLLKMGPKF 153 (258)
T ss_dssp CEEEEEETTHHHHHHHHHTTCGGGEEEEEEESCCCCCSSSCTTHHHHHHHTSTTCCTTCEEEEEEETTEEEEEEECCHHH
T ss_pred ceEEEEeChhHHHHHHHHHhChHhhcEEEEecCCCCCCCCcchHHHHHhcccchhhhhcccchhhhhccChhhhhhhHHH
Confidence 8999999999999999999999999999988775432211000 0000000
Q ss_pred --hhcCCCCcHHHHHHHHh-cCcccC-------CCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhcc
Q 003878 669 --SDFGCSEEEEEFYWLIK-YSPLHN-------VRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCT 738 (789)
Q Consensus 669 --~e~g~p~~~~~~~~l~~-~sP~~~-------v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~ 738 (789)
..+.....++....+.. ..+... .... ........|+|+++|++|..+|+..+.++.+.+...
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~~--- 226 (258)
T 3dqz_A 154 MKARLYQNCPIEDYELAKMLHRQGSFFTEDLSKKEKF----SEEGYGSVQRVYVMSSEDKAIPCDFIRWMIDNFNVS--- 226 (258)
T ss_dssp HHHHTSTTSCHHHHHHHHHHCCCEECCHHHHHTSCCC----CTTTGGGSCEEEEEETTCSSSCHHHHHHHHHHSCCS---
T ss_pred HHHHhhccCCHHHHHHHHHhccCCchhhhhhhccccc----cccccccCCEEEEECCCCeeeCHHHHHHHHHhCCcc---
Confidence 00111111222222211 112111 0000 000012479999999999999998888777665422
Q ss_pred CCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 739 SLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 739 ~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
++.+++++||....... .+..+.+.+|+.+++
T Consensus 227 -----------~~~~~~~~gH~~~~~~p--~~~~~~i~~fl~~~~ 258 (258)
T 3dqz_A 227 -----------KVYEIDGGDHMVMLSKP--QKLFDSLSAIATDYM 258 (258)
T ss_dssp -----------CEEEETTCCSCHHHHSH--HHHHHHHHHHHHHTC
T ss_pred -----------cEEEcCCCCCchhhcCh--HHHHHHHHHHHHHhC
Confidence 67889999998654322 356667888888764
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.9e-14 Score=144.75 Aligned_cols=215 Identities=13% Similarity=0.094 Sum_probs=130.4
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
...|+||++||..+... .|.. ....|.++||.|+++|+||.|..... .....++++..+.+..+++.- .
T Consensus 10 ~~~~~vvllHG~~~~~~--~~~~-~~~~l~~~g~~v~~~D~~G~G~S~~~-------~~~~~~~~~~~~~~~~~l~~l-~ 78 (267)
T 3sty_A 10 FVKKHFVLVHAAFHGAW--CWYK-IVALMRSSGHNVTALDLGASGINPKQ-------ALQIPNFSDYLSPLMEFMASL-P 78 (267)
T ss_dssp CCCCEEEEECCTTCCGG--GGHH-HHHHHHHTTCEEEEECCTTSTTCSCC-------GGGCCSHHHHHHHHHHHHHTS-C
T ss_pred CCCCeEEEECCCCCCcc--hHHH-HHHHHHhcCCeEEEeccccCCCCCCc-------CCccCCHHHHHHHHHHHHHhc-C
Confidence 45689999999876543 3443 34555558999999999998764322 111245667766666666552 1
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc------cc-cCCccch--------------------
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH------KF-TIGHAWV-------------------- 668 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~------~~-~~~~~~~-------------------- 668 (789)
+.+++.++|||+||.+++.++.++|++++++|+..|........ .. .....|.
T Consensus 79 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (267)
T 3sty_A 79 ANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNIDATTVCTKAGSAVLGQLDNCVTYENGPTNPPTTLIAG 158 (267)
T ss_dssp TTSCEEEEEETTHHHHHHHHHHHSGGGEEEEEEESCCCCBTTBCHHHHHHHHHHTTTTCTTCEEECTTCTTSCCCEEECC
T ss_pred CCCCEEEEEEcHHHHHHHHHHHhChhhcceEEEecCCCCCCcchHHHHHHHhcccchhhhhhhhhhhhhhhcccchhhhh
Confidence 45799999999999999999999999999999887754321110 00 0000000
Q ss_pred -----hhcCCCCcHHHHHHHHhc-CcccCC--------CCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHH
Q 003878 669 -----SDFGCSEEEEEFYWLIKY-SPLHNV--------RRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQY 734 (789)
Q Consensus 669 -----~e~g~p~~~~~~~~l~~~-sP~~~v--------~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~ 734 (789)
..+.....++....+... .+.... ... ........|+|+++|++|..+++..+.++.+.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~ 234 (267)
T 3sty_A 159 PKFLATNVYHLSPIEDLALATALVRPLYLYLAEDISKEVVL----SSKRYGSVKRVFIVATENDALKKEFLKLMIEKNPP 234 (267)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHCCCEECCCHHHHHHHCCC----CTTTGGGSCEEEEECCCSCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhhcccCCHHHHHHHHHhhccchhHHHHHhhcchhc----ccccccCCCEEEEEeCCCCccCHHHHHHHHHhCCC
Confidence 001111112222222111 111110 000 00001147999999999999998887777665532
Q ss_pred hhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 735 VLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 735 ~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
.++.+++++||....... .+..+.+.+|+.+
T Consensus 235 --------------~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~ 265 (267)
T 3sty_A 235 --------------DEVKEIEGSDHVTMMSKP--QQLFTTLLSIANK 265 (267)
T ss_dssp --------------SEEEECTTCCSCHHHHSH--HHHHHHHHHHHHH
T ss_pred --------------ceEEEeCCCCccccccCh--HHHHHHHHHHHHh
Confidence 378999999998643322 3556677788765
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-13 Score=160.92 Aligned_cols=289 Identities=12% Similarity=0.125 Sum_probs=172.0
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccccee
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFF 213 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 213 (789)
..+++|||||++++ + +..| +|++||+++|+... .+... ...- .-..++.+.|+++
T Consensus 19 ~~~~~~spdg~~~~-~-~~dg----~i~~~d~~~g~~~~-~~~~~------~~~~--~~v~~~~~SpDg~---------- 73 (723)
T 1xfd_A 19 DPEAKWISDTEFIY-R-EQKG----TVRLWNVETNTSTV-LIEGK------KIES--LRAIRYEISPDRE---------- 73 (723)
T ss_dssp CCCCCBSSSSCBCC-C-CSSS----CEEEBCGGGCCCEE-EECTT------TTTT--TTCSEEEECTTSS----------
T ss_pred ccccEEcCCCcEEE-E-eCCC----CEEEEECCCCcEEE-Eeccc------cccc--cccceEEECCCCC----------
Confidence 35678999999653 3 2222 89999999996542 11111 0000 0023456678997
Q ss_pred eEEEeeecccc--------ceeeeeeec----ccc--------cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCc
Q 003878 214 FFYLFSLVKST--------IYSFWSVVS----QFK--------FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNL 273 (789)
Q Consensus 214 ~~~~~~s~~~g--------~~~l~~~~~----~~~--------~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~ 273 (789)
+++|.++..+ ...+|.+.. ++. ...++|||||+.|+|...
T Consensus 74 -~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~------------------- 133 (723)
T 1xfd_A 74 -YALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE------------------- 133 (723)
T ss_dssp -EEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-------------------
T ss_pred -EEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-------------------
Confidence 6677766443 333554432 111 346899999999999853
Q ss_pred ccEEEEEECCCCCCCcEEEEecCCCCe----------------eEEEEEEecCCcEEEEEEEcCCC--------------
Q 003878 274 YHEFYYHFLGTKQSEDILCWKDPEHPK----------------YIFSGHVTEDGQYLVMCIEENCD-------------- 323 (789)
Q Consensus 274 ~~~i~~~~lg~~~~~~~~~~~~~~~~~----------------~~~~~~~SpDG~~l~~~~~~~~~-------------- 323 (789)
.+|+++++.++.. ..+........ ...++.|||||++|++.+.+...
T Consensus 134 -~~i~~~~~~~g~~--~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~ 210 (723)
T 1xfd_A 134 -NNIYYCAHVGKQA--IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIY 210 (723)
T ss_dssp -TEEEEESSSSSCC--EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSS
T ss_pred -CeEEEEECCCCce--EEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCC
Confidence 2589988876543 23333221111 01468999999999998765310
Q ss_pred ---------------CceEEEEEECCCCCCCcccccccCCCCccEeeecc-------ccceeEEEecCCCEEEEEECCCC
Q 003878 324 ---------------PVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG-------FDAQYEVIANDDTVFTFLTNKDA 381 (789)
Q Consensus 324 ---------------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~s~dG~~l~~~tn~~~ 381 (789)
....|+++|++++.. ...+... .......|||||+.+++.+++..
T Consensus 211 ~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~-------------~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 277 (723)
T 1xfd_A 211 PTVKPYHYPKAGSENPSISLHVIGLNGPTH-------------DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ 277 (723)
T ss_dssp CCCEEEECCBTTSCCCEEEEEEEESSSSCC-------------CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS
T ss_pred CcceeccCCCCCCCCCeeEEEEEECCCCce-------------eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCC
Confidence 134799999987421 1112111 11122459999998877777655
Q ss_pred CCceEEEEECCCCCCeEEeccCCCCcee----eeEEEecCCE-EEEE-EEeCC----eEEEEEEE-CCCCce--eeeccc
Q 003878 382 PKYKIIRVDLKEPNDWFEVIPEAERDVL----ESATAVNLNQ-MIVS-YLSDV----KYVLQIRD-LKNGSL--LHQLPI 448 (789)
Q Consensus 382 ~~~~L~~~dl~~~~~~~~l~~~~~~~~i----~~v~~~~~~~-lv~~-~~~~g----~~~L~~~d-l~tG~~--~~~l~~ 448 (789)
....|+++|+++++ ...++.......+ ..+.|++++. +++. ...++ ..+|+++| ..+++. .+.++.
T Consensus 278 ~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 356 (723)
T 1xfd_A 278 NVSILTLCDATTGV-CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS 356 (723)
T ss_dssp CEEEEEEEETTTCC-EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC
T ss_pred CeEEEEEEeCCCCc-ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec
Confidence 66789999998886 4444332111222 3678887644 6655 55666 67899999 554541 356664
Q ss_pred CCeeEE-EeecccCCcEEEEEEcCCCCCc--EEEEEECCC
Q 003878 449 EIGSVN-AISARREDSVVFISFTSFLIPG--IVYQCNLKT 485 (789)
Q Consensus 449 ~~~~v~-~~s~s~d~~~l~~~~ss~~~P~--~ly~~dl~t 485 (789)
....+. .+++++|++.|++.... ..|. .+|.++..+
T Consensus 357 ~~~~~~~~~~~spdg~~l~~~~~~-~~~~~~~l~~~~~~~ 395 (723)
T 1xfd_A 357 GDWDVTKILAYDEKGNKIYFLSTE-DLPRRRQLYSANTVG 395 (723)
T ss_dssp SSSCEEEEEEEETTTTEEEEEESS-SCTTCCEEEEECSST
T ss_pred CCeEEEeeeEEcCCCCEEEEEEcC-CCCcceEEEEEeCCC
Confidence 433343 36899999998876543 2233 455555544
|
| >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-13 Score=141.80 Aligned_cols=218 Identities=12% Similarity=0.039 Sum_probs=129.2
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccC
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 594 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~ 594 (789)
..+| .+|.+... + +.|.||++||..+... .|.. ....|.++||.|+++|.||.|..... .
T Consensus 9 ~~~g-~~l~y~~~---g-----~g~pvvllHG~~~~~~--~~~~-~~~~L~~~g~~vi~~D~~G~G~S~~~--------~ 68 (277)
T 1brt_A 9 NSTS-IDLYYEDH---G-----TGQPVVLIHGFPLSGH--SWER-QSAALLDAGYRVITYDRRGFGQSSQP--------T 68 (277)
T ss_dssp TTEE-EEEEEEEE---C-----SSSEEEEECCTTCCGG--GGHH-HHHHHHHTTCEEEEECCTTSTTSCCC--------S
T ss_pred cCCC-cEEEEEEc---C-----CCCeEEEECCCCCcHH--HHHH-HHHHHhhCCCEEEEeCCCCCCCCCCC--------C
Confidence 4577 77755432 2 2244899999876543 3444 34555558999999999998764321 1
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC-ceeEEEecCCccccccc-ccccCC--------
Q 003878 595 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD-LFGCALAHVGVMDMLRY-HKFTIG-------- 664 (789)
Q Consensus 595 ~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd-~f~a~v~~~p~~d~~~~-~~~~~~-------- 664 (789)
...+++++.+.+..+++. .+.+++.++|||+||.+++.++.++|+ +++++|+..|....... .....+
T Consensus 69 ~~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (277)
T 1brt_A 69 TGYDYDTFAADLNTVLET--LDLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPFLLKTDDNPDGAAPQEFFD 146 (277)
T ss_dssp SCCSHHHHHHHHHHHHHH--HTCCSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTCSBCHHHHH
T ss_pred CCccHHHHHHHHHHHHHH--hCCCceEEEEECccHHHHHHHHHHcCcceEEEEEEecCcCccccccccCccccccHHHHH
Confidence 223455555544444443 233689999999999999999999999 99999988764321100 000000
Q ss_pred ----------ccch----h-hc------CCCCcHHHHHHHH----------------hc--CcccCCCCCCCCCCCCCCC
Q 003878 665 ----------HAWV----S-DF------GCSEEEEEFYWLI----------------KY--SPLHNVRRPWEQNPDKPFQ 705 (789)
Q Consensus 665 ----------~~~~----~-e~------g~p~~~~~~~~l~----------------~~--sP~~~v~~~~~~~~~~~~~ 705 (789)
..+. . .+ +....++..+.+. .+ .....+.+ .
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------i 216 (277)
T 1brt_A 147 GIVAAVKADRYAFYTGFFNDFYNLDENLGTRISEEAVRNSWNTAASGGFFAAAAAPTTWYTDFRADIPR----------I 216 (277)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTTHHHHBTTTBCHHHHHHHHHHHHHSCHHHHHHGGGGTTCCCTTTGGG----------C
T ss_pred HHHHHHhcCchhhHHHHHHHHhhccccccccCCHHHHHHHHHHHhccchHHHHHHHHHHhccchhhccc----------C
Confidence 0000 0 01 1111222111110 00 01111222 3
Q ss_pred CCeEEEEecCCCCCCCcHHH-HHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 706 YPSTLLLTADHDDRVVPLHS-LKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 706 ~pp~Li~~g~~D~~V~~~~~-~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
..|+|+++|++|..+|+..+ .++.+.+.. .++.+++++||....... .+..+.+.+||.
T Consensus 217 ~~P~lii~G~~D~~~~~~~~~~~~~~~~~~--------------~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~ 276 (277)
T 1brt_A 217 DVPALILHGTGDRTLPIENTARVFHKALPS--------------AEYVEVEGAPHGLLWTHA--EEVNTALLAFLA 276 (277)
T ss_dssp CSCEEEEEETTCSSSCGGGTHHHHHHHCTT--------------SEEEEETTCCTTHHHHTH--HHHHHHHHHHHH
T ss_pred CCCeEEEecCCCccCChHHHHHHHHHHCCC--------------CcEEEeCCCCcchhhhCH--HHHHHHHHHHHh
Confidence 68999999999999999887 666655432 378899999998643222 345566788874
|
| >3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.4e-14 Score=145.89 Aligned_cols=209 Identities=13% Similarity=0.086 Sum_probs=133.2
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
+..|.||++||..+... .|.. ....|. ++|.|+++|.||.|.... ......+++++.+.+..+++.-
T Consensus 13 ~~~~~vvllHG~~~~~~--~w~~-~~~~L~-~~~~vi~~Dl~G~G~S~~-------~~~~~~~~~~~a~dl~~~l~~l-- 79 (268)
T 3v48_A 13 ADAPVVVLISGLGGSGS--YWLP-QLAVLE-QEYQVVCYDQRGTGNNPD-------TLAEDYSIAQMAAELHQALVAA-- 79 (268)
T ss_dssp TTCCEEEEECCTTCCGG--GGHH-HHHHHH-TTSEEEECCCTTBTTBCC-------CCCTTCCHHHHHHHHHHHHHHT--
T ss_pred CCCCEEEEeCCCCccHH--HHHH-HHHHHh-hcCeEEEECCCCCCCCCC-------CccccCCHHHHHHHHHHHHHHc--
Confidence 34689999999766542 4444 345666 789999999999875321 1112346777777777776652
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc------------------------ccCCccchhhc
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK------------------------FTIGHAWVSDF 671 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~------------------------~~~~~~~~~e~ 671 (789)
..+++.++|||+||.+++.++.++|++++++|+..+......... +.....|....
T Consensus 80 ~~~~~~lvGhS~GG~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (268)
T 3v48_A 80 GIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAAR 159 (268)
T ss_dssp TCCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTT
T ss_pred CCCCeEEEEecHHHHHHHHHHHhChhhceEEEEeccccccchhhhHHHHHHHHHHhccchhhhhhhhhhhcCchhhhhcc
Confidence 335899999999999999999999999999998776433211000 00000010000
Q ss_pred -------------CCCCcHH---HHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHh
Q 003878 672 -------------GCSEEEE---EFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYV 735 (789)
Q Consensus 672 -------------g~p~~~~---~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~ 735 (789)
..+.... ....+...+....+.++ ..|+|+++|++|..+|+..+.++.+.+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i----------~~P~Lii~G~~D~~~p~~~~~~l~~~~p~- 228 (268)
T 3v48_A 160 APRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRI----------RCPVQIICASDDLLVPTACSSELHAALPD- 228 (268)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCBCTTTGGGC----------CSCEEEEEETTCSSSCTHHHHHHHHHCSS-
T ss_pred cccchhhHHHHHhhcCchhHHHHHHHHHhccchhhhhhcC----------CCCeEEEEeCCCcccCHHHHHHHHHhCCc-
Confidence 0000000 11112222222233343 68999999999999999988888776543
Q ss_pred hccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 736 LCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
.++.+++++||....... ....+.+.+||...+
T Consensus 229 -------------~~~~~~~~~GH~~~~e~p--~~~~~~i~~fl~~~~ 261 (268)
T 3v48_A 229 -------------SQKMVMPYGGHACNVTDP--ETFNALLLNGLASLL 261 (268)
T ss_dssp -------------EEEEEESSCCTTHHHHCH--HHHHHHHHHHHHHHH
T ss_pred -------------CeEEEeCCCCcchhhcCH--HHHHHHHHHHHHHhc
Confidence 378899999998644333 356677889988754
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.52 E-value=6e-14 Score=142.19 Aligned_cols=184 Identities=13% Similarity=0.060 Sum_probs=121.2
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHH-----
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLI----- 610 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~----- 610 (789)
++.|+||++||..+...... ....+. +||.|+.+|+||.|... .....+++++.+.+..++
T Consensus 14 ~~~~~vv~~hG~~~~~~~~~----~~~~l~-~g~~v~~~d~~g~g~s~---------~~~~~~~~~~~~~~~~~~~~~~~ 79 (245)
T 3e0x_A 14 KSPNTLLFVHGSGCNLKIFG----ELEKYL-EDYNCILLDLKGHGESK---------GQCPSTVYGYIDNVANFITNSEV 79 (245)
T ss_dssp TCSCEEEEECCTTCCGGGGT----TGGGGC-TTSEEEEECCTTSTTCC---------SCCCSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCEEEEEeCCcccHHHHH----HHHHHH-hCCEEEEecCCCCCCCC---------CCCCcCHHHHHHHHHHHHHhhhh
Confidence 35689999999876654433 223345 89999999999977643 112345666666666666
Q ss_pred -HcCCCCCCcEEEEeeChHHHHHHHHHHh-CCCceeEEEecCCccccccccc--------cc------------CCccch
Q 003878 611 -SAGYTQSRKLCIEGGSNGGLLVGACINQ-RPDLFGCALAHVGVMDMLRYHK--------FT------------IGHAWV 668 (789)
Q Consensus 611 -~~~~~d~~~i~i~G~S~GG~l~~~~~~~-~pd~f~a~v~~~p~~d~~~~~~--------~~------------~~~~~~ 668 (789)
+. .. ++.++|+|+||.+++.++.+ +|+ ++++|+..|..+...... .. ....+.
T Consensus 80 ~~~--~~--~~~l~G~S~Gg~~a~~~a~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (245)
T 3e0x_A 80 TKH--QK--NITLIGYSMGGAIVLGVALKKLPN-VRKVVSLSGGARFDKLDKDFMEKIYHNQLDNNYLLECIGGIDNPLS 154 (245)
T ss_dssp TTT--CS--CEEEEEETHHHHHHHHHHTTTCTT-EEEEEEESCCSBCTTSCHHHHHHHHTTCCCHHHHHHHHTCSCSHHH
T ss_pred Hhh--cC--ceEEEEeChhHHHHHHHHHHhCcc-ccEEEEecCCCccccccHHHHHHHHHHHHHhhcCcccccccchHHH
Confidence 33 23 99999999999999999999 999 999999998776521110 00 000000
Q ss_pred hhc-CC-CCcHH----HHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCC
Q 003878 669 SDF-GC-SEEEE----EFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLEN 742 (789)
Q Consensus 669 ~e~-g~-p~~~~----~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~ 742 (789)
..+ .. ..++. .+..+..+++...+.+. ..|+|+++|++|..+++..+.++.+.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~P~l~i~g~~D~~~~~~~~~~~~~~~~--------- 215 (245)
T 3e0x_A 155 EKYFETLEKDPDIMINDLIACKLIDLVDNLKNI----------DIPVKAIVAKDELLTLVEYSEIIKKEVE--------- 215 (245)
T ss_dssp HHHHTTSCSSHHHHHHHHHHHHHCBCGGGGGGC----------CSCEEEEEETTCSSSCHHHHHHHHHHSS---------
T ss_pred HHHHHHHhcCcHHHHHHHHHhccccHHHHHHhC----------CCCEEEEEeCCCCCCCHHHHHHHHHHcC---------
Confidence 111 00 00111 12222344444445554 6899999999999999998877776653
Q ss_pred CCCCCcEEEEEeCCCCcCCC
Q 003878 743 SPQTNPIIGRIERKAGHGVG 762 (789)
Q Consensus 743 ~~~~~~~~l~~~~~~gH~~~ 762 (789)
.+++.+++++||...
T Consensus 216 -----~~~~~~~~~~gH~~~ 230 (245)
T 3e0x_A 216 -----NSELKIFETGKHFLL 230 (245)
T ss_dssp -----SEEEEEESSCGGGHH
T ss_pred -----CceEEEeCCCCcceE
Confidence 258899999999864
|
| >1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-15 Score=169.19 Aligned_cols=217 Identities=15% Similarity=0.122 Sum_probs=140.2
Q ss_pred EEEEEEecCCCCCCCCccEEEEEcCCCCccCC---CCCCHHHHHHHHcCCeEEEEEeecCCC-CCChhHHhcccccCCcc
Q 003878 522 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT---PSFSVSRTILMRHLGAVFCIANIRGGG-EYGEEWHKGGALAKKQN 597 (789)
Q Consensus 522 i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~---~~~~~~~~~~l~~~G~~v~~~~~RG~g-~~g~~~~~~~~~~~~~~ 597 (789)
+.+.++.|+.. .++.|+||++|||...... ..+.. ..++.+.|++|+.+|||.+. +|+..-... .......
T Consensus 83 L~l~v~~P~~~--~~~~PviV~iHGGg~~~g~~~~~~~~~--~~la~~g~~vvv~~nYRlg~~Gf~~~~~~~-~~~~~n~ 157 (489)
T 1qe3_A 83 LYVNVFAPDTP--SQNLPVMVWIHGGAFYLGAGSEPLYDG--SKLAAQGEVIVVTLNYRLGPFGFLHLSSFD-EAYSDNL 157 (489)
T ss_dssp CEEEEEEECSS--CCSEEEEEEECCSTTTSCCTTSGGGCC--HHHHHHHTCEEEEECCCCHHHHSCCCTTTC-TTSCSCH
T ss_pred CEEEEEeCCCC--CCCCCEEEEECCCccccCCCCCcccCH--HHHHhcCCEEEEecCccCcccccCcccccc-ccCCCCc
Confidence 55667788752 3458999999998633222 22332 34555234999999999432 333210000 0123344
Q ss_pred hHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhC--CCceeEEEecCCcccccccccc-cCCccchhhc
Q 003878 598 CFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQR--PDLFGCALAHVGVMDMLRYHKF-TIGHAWVSDF 671 (789)
Q Consensus 598 ~~~D~~~~~~~L~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--pd~f~a~v~~~p~~d~~~~~~~-~~~~~~~~e~ 671 (789)
.+.|+.++++|+.++. ..||+||+|+|+|+||.+++.++... +++|+++|+.+|..++...... .....+....
T Consensus 158 gl~D~~~al~wv~~~i~~fggDp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~~~~~~~~~~~ 237 (489)
T 1qe3_A 158 GLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQAASTAAAFLQVL 237 (489)
T ss_dssp HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCCCBCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCCCcceeEEEEechHHHHHHHHHhCccccchHHHHHHhCCCCCCCCHHHHHHHHHHHHHHc
Confidence 5899999999998762 35999999999999999998887753 5799999999998744322110 0011122334
Q ss_pred CCCC-cHH------HHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCC
Q 003878 672 GCSE-EEE------EFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSP 744 (789)
Q Consensus 672 g~p~-~~~------~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~ 744 (789)
|++. ..+ ..+.+.+.+++.+.... .+|.+++++..|.+|.+.++.+++++++..
T Consensus 238 g~~~~~~~~Lr~~~~~~l~~~~~~~~~~~~~----------~~~~~~~~p~~D~~~~~~~~~~~~~~~~~~--------- 298 (489)
T 1qe3_A 238 GINESQLDRLHTVAAEDLLKAADQLRIAEKE----------NIFQLFFQPALDPKTLPEEPEKSIAEGAAS--------- 298 (489)
T ss_dssp TCCTTCGGGGGTSCHHHHHHHHHHHHTSTTC----------CTTSCSSCCBCBTTTBCSCHHHHHHTTTTT---------
T ss_pred CCCHHHHHHHHcCCHHHHHHHHHHhhhcccc----------ccCCccceEeECCeecCcCHHHHHhcCCCC---------
Confidence 6542 110 11223333333322222 456778899999999999999998877766
Q ss_pred CCCcEEEEEeCCCCcCCCC
Q 003878 745 QTNPIIGRIERKAGHGVGL 763 (789)
Q Consensus 745 ~~~~~~l~~~~~~gH~~~~ 763 (789)
++|+.+-.++++||.+..
T Consensus 299 -~vp~~~g~~~~Eg~~~~~ 316 (489)
T 1qe3_A 299 -GIPLLIGTTRDEGYLFFT 316 (489)
T ss_dssp -TCCEEEEEETTGGGGTCC
T ss_pred -CCCEEEeeecchhHhhcc
Confidence 899999999999998764
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.7e-14 Score=160.66 Aligned_cols=126 Identities=14% Similarity=0.147 Sum_probs=87.6
Q ss_pred EEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHH
Q 003878 508 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWH 587 (789)
Q Consensus 508 ~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~ 587 (789)
.+..+++..|| .+|.+... ++.|+||++||+.+... .|... ...|.++||.|+++|+||.|.....
T Consensus 237 ~~~~~~~~~dg-~~l~~~~~--------g~~p~vv~~HG~~~~~~--~~~~~-~~~l~~~G~~v~~~D~~G~G~S~~~-- 302 (555)
T 3i28_A 237 MSHGYVTVKPR-VRLHFVEL--------GSGPAVCLCHGFPESWY--SWRYQ-IPALAQAGYRVLAMDMKGYGESSAP-- 302 (555)
T ss_dssp SEEEEEEEETT-EEEEEEEE--------CSSSEEEEECCTTCCGG--GGTTH-HHHHHHTTCEEEEECCTTSTTSCCC--
T ss_pred cceeEEEeCCC-cEEEEEEc--------CCCCEEEEEeCCCCchh--HHHHH-HHHHHhCCCEEEEecCCCCCCCCCC--
Confidence 34555666799 88876543 24589999999876643 34433 3445558999999999998754321
Q ss_pred hcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 588 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 588 ~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
......+++++.+.+..+++. .+.+++.++|||+||.+++.++.++|++++++|+..|..
T Consensus 303 ----~~~~~~~~~~~~~d~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 362 (555)
T 3i28_A 303 ----PEIEEYCMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPF 362 (555)
T ss_dssp ----SCGGGGSHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred ----CCcccccHHHHHHHHHHHHHH--cCCCcEEEEEecHHHHHHHHHHHhChHheeEEEEEccCC
Confidence 111223355555544444443 244699999999999999999999999999999876643
|
| >3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.4e-14 Score=147.59 Aligned_cols=220 Identities=14% Similarity=0.048 Sum_probs=130.8
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHc-CCeEEEEEeecCCCCCChhHHhcccccCC
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRH-LGAVFCIANIRGGGEYGEEWHKGGALAKK 595 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~RG~g~~g~~~~~~~~~~~~ 595 (789)
+| .+|.+... ++.|.||++||..+... .|... ...|.+ +||.|+++|+||.|..... ..
T Consensus 9 ~g-~~l~y~~~--------g~~~~vv~lhG~~~~~~--~~~~~-~~~l~~~~g~~v~~~d~~G~G~s~~~--------~~ 68 (272)
T 3fsg_A 9 TR-SNISYFSI--------GSGTPIIFLHGLSLDKQ--STCLF-FEPLSNVGQYQRIYLDLPGMGNSDPI--------SP 68 (272)
T ss_dssp CT-TCCEEEEE--------CCSSEEEEECCTTCCHH--HHHHH-HTTSTTSTTSEEEEECCTTSTTCCCC--------SS
T ss_pred cC-CeEEEEEc--------CCCCeEEEEeCCCCcHH--HHHHH-HHHHhccCceEEEEecCCCCCCCCCC--------CC
Confidence 56 66654432 24578999999765432 22222 223443 5999999999997754221 11
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCC------ccch-
Q 003878 596 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG------HAWV- 668 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~------~~~~- 668 (789)
.+++++.+.+..+++.- .+.+++.++|+|+||.+++.++.++|++++++|+..|............. ..+.
T Consensus 69 -~~~~~~~~~~~~~l~~~-~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (272)
T 3fsg_A 69 -STSDNVLETLIEAIEEI-IGARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVITADHSKRLTGKHINILEEDINP 146 (272)
T ss_dssp -CSHHHHHHHHHHHHHHH-HTTCCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECSSCCGGGCCCCCCCCEECSCCCC
T ss_pred -CCHHHHHHHHHHHHHHH-hCCCcEEEEEeCchHHHHHHHHHhChHhhheeEEECcccccCccccccccchhhhhhhhhc
Confidence 44555555444444330 13468999999999999999999999999999998887533211100000 0000
Q ss_pred -------hhc---CCCCcHHHH-------------------HHHHhcCcc-----cCCCCCCCCCCCCCCCCCeEEEEec
Q 003878 669 -------SDF---GCSEEEEEF-------------------YWLIKYSPL-----HNVRRPWEQNPDKPFQYPSTLLLTA 714 (789)
Q Consensus 669 -------~e~---g~p~~~~~~-------------------~~l~~~sP~-----~~v~~~~~~~~~~~~~~pp~Li~~g 714 (789)
..+ .....+... ..+.....+ ..... ...|+|+++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~P~l~i~g 216 (272)
T 3fsg_A 147 VENKEYFADFLSMNVIINNQAWHDYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNIN----------YQFPFKIMVG 216 (272)
T ss_dssp CTTGGGHHHHHHHCSEESHHHHHHHHHHTHHHHHHCCHHHHHHHTTSCSCTTHHHHTTCC----------CSSCEEEEEE
T ss_pred ccCHHHHHHHHHHhccCCCchhHHHHHHhhhhhhhccHHHHHHHhhhcCCChhhhhhhcc----------CCCCEEEEEe
Confidence 000 000011111 111111000 01223 2689999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 715 DHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 715 ~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
++|..+|+..+.++.+.+. .+++.+++++||...... ..+....+.+||.+...
T Consensus 217 ~~D~~~~~~~~~~~~~~~~--------------~~~~~~~~~~gH~~~~~~--~~~~~~~i~~fl~~~~~ 270 (272)
T 3fsg_A 217 RNDQVVGYQEQLKLINHNE--------------NGEIVLLNRTGHNLMIDQ--REAVGFHFDLFLDELNS 270 (272)
T ss_dssp TTCTTTCSHHHHHHHTTCT--------------TEEEEEESSCCSSHHHHT--HHHHHHHHHHHHHHHHC
T ss_pred CCCCcCCHHHHHHHHHhcC--------------CCeEEEecCCCCCchhcC--HHHHHHHHHHHHHHhhc
Confidence 9999999998877765443 258899999999865422 23556678889887643
|
| >1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-12 Score=134.27 Aligned_cols=223 Identities=13% Similarity=0.080 Sum_probs=131.0
Q ss_pred EecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccc
Q 003878 513 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 592 (789)
Q Consensus 513 ~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~ 592 (789)
+++.|| .+|.+... ++.|.||++||..+... .|... ...|.++||.|+++|.||.|.....
T Consensus 3 ~~~~~g-~~l~y~~~--------g~g~~vvllHG~~~~~~--~w~~~-~~~l~~~g~~vi~~D~~G~G~S~~~------- 63 (274)
T 1a8q_A 3 CTTRDG-VEIFYKDW--------GQGRPVVFIHGWPLNGD--AWQDQ-LKAVVDAGYRGIAHDRRGHGHSTPV------- 63 (274)
T ss_dssp EECTTS-CEEEEEEE--------CSSSEEEEECCTTCCGG--GGHHH-HHHHHHTTCEEEEECCTTSTTSCCC-------
T ss_pred EEccCC-CEEEEEec--------CCCceEEEECCCcchHH--HHHHH-HHHHHhCCCeEEEEcCCCCCCCCCC-------
Confidence 567789 88765432 23468999999765543 34443 3445558999999999998864321
Q ss_pred cCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-CCceeEEEecCCccccccc---ccccCCc---
Q 003878 593 AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR-PDLFGCALAHVGVMDMLRY---HKFTIGH--- 665 (789)
Q Consensus 593 ~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-pd~f~a~v~~~p~~d~~~~---~~~~~~~--- 665 (789)
....+++++.+-+..+++. .+.+++.++|||+||.+++.++.++ |++++++|+..+....... .......
T Consensus 64 -~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 140 (274)
T 1a8q_A 64 -WDGYDFDTFADDLNDLLTD--LDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVPDEVF 140 (274)
T ss_dssp -SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHHH
T ss_pred -CCCCcHHHHHHHHHHHHHH--cCCCceEEEEeCccHHHHHHHHHHhhhHheeeeeEecCCCccccccccCcccchHHHH
Confidence 1123555555555555544 2346899999999999998877665 9999999987753211000 0000000
Q ss_pred ------------cch-----hhcCC-----CCcHHHHH----------------HHHhc---CcccCCCCCCCCCCCCCC
Q 003878 666 ------------AWV-----SDFGC-----SEEEEEFY----------------WLIKY---SPLHNVRRPWEQNPDKPF 704 (789)
Q Consensus 666 ------------~~~-----~e~g~-----p~~~~~~~----------------~l~~~---sP~~~v~~~~~~~~~~~~ 704 (789)
.+. ..++. ...++..+ .+..+ .....+.++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i--------- 211 (274)
T 1a8q_A 141 DALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKKF--------- 211 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTTC---------
T ss_pred HHHHHHhhccHHHHHHHhcccccccccccccccHHHHHHHHHHhhhcChHHHHHHHhhhhcCcHHHHhhcC---------
Confidence 000 00110 01111111 11111 111223343
Q ss_pred CCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 705 QYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 705 ~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
..|+|+++|++|..+|+.+..++.+++. ...++.+++++||.......+..+..+.+.+||.
T Consensus 212 -~~P~lii~G~~D~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~gH~~~~e~~~p~~~~~~i~~fl~ 273 (274)
T 1a8q_A 212 -DIPTLVVHGDDDQVVPIDATGRKSAQII-------------PNAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLN 273 (274)
T ss_dssp -CSCEEEEEETTCSSSCGGGTHHHHHHHS-------------TTCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHT
T ss_pred -CCCEEEEecCcCCCCCcHHHHHHHHhhC-------------CCceEEEECCCCCceecccCCHHHHHHHHHHHhc
Confidence 6899999999999999886554443321 1247899999999876541122356677888874
|
| >4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=142.64 Aligned_cols=210 Identities=10% Similarity=0.016 Sum_probs=129.9
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
..|+||++||..+.... |.. ....|. .||.|+++|+||.|....... ......+++++.+.+..+++. .+
T Consensus 19 ~~p~vv~~HG~~~~~~~--~~~-~~~~l~-~g~~v~~~D~~G~G~S~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~ 88 (269)
T 4dnp_A 19 GERVLVLAHGFGTDQSA--WNR-ILPFFL-RDYRVVLYDLVCAGSVNPDFF----DFRRYTTLDPYVDDLLHILDA--LG 88 (269)
T ss_dssp CSSEEEEECCTTCCGGG--GTT-TGGGGT-TTCEEEEECCTTSTTSCGGGC----CTTTCSSSHHHHHHHHHHHHH--TT
T ss_pred CCCEEEEEeCCCCcHHH--HHH-HHHHHh-CCcEEEEEcCCCCCCCCCCCC----CccccCcHHHHHHHHHHHHHh--cC
Confidence 45899999997665433 332 235566 499999999999876533111 111222556666666666654 24
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccC-----------------Cccchhh----cCCCC
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTI-----------------GHAWVSD----FGCSE 675 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~-----------------~~~~~~e----~g~p~ 675 (789)
.+++.++|||+||.+++.++.++|++++++|+..|............ ...|... ...+.
T Consensus 89 ~~~~~l~GhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (269)
T 4dnp_A 89 IDCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGAD 168 (269)
T ss_dssp CCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCCBCBTTBCCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCSS
T ss_pred CCeEEEEccCHHHHHHHHHHHhCcHhhceeEEeCCCCCCCChHHhccccchHHHHHHHHhccccHHHHHHHhhhhhccCC
Confidence 46899999999999999999999999999999988654322110000 0001000 00111
Q ss_pred cHHH-------------------HHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhh
Q 003878 676 EEEE-------------------FYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVL 736 (789)
Q Consensus 676 ~~~~-------------------~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~ 736 (789)
.++. ...+...+....+.++ ..|+|+++|++|..+|+..+.++.+.+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----------~~P~l~i~g~~D~~~~~~~~~~~~~~~~~-- 236 (269)
T 4dnp_A 169 VPAAVREFSRTLFNMRPDITLFVSRTVFNSDMRGVLGLV----------KVPCHIFQTARDHSVPASVATYLKNHLGG-- 236 (269)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCGGGGGGC----------CSCEEEEEEESBTTBCHHHHHHHHHHSSS--
T ss_pred ChhHHHHHHHHHHccCcchhhhHhhhhcchhhHhhhccc----------cCCEEEEecCCCcccCHHHHHHHHHhCCC--
Confidence 1111 1111122223333343 67999999999999999988877766532
Q ss_pred ccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 737 CTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 737 ~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
.+++.+++++||....... .+....+.+||.+
T Consensus 237 -----------~~~~~~~~~~gH~~~~~~p--~~~~~~i~~fl~~ 268 (269)
T 4dnp_A 237 -----------KNTVHWLNIEGHLPHLSAP--TLLAQELRRALSH 268 (269)
T ss_dssp -----------CEEEEEEEEESSCHHHHCH--HHHHHHHHHHHC-
T ss_pred -----------CceEEEeCCCCCCccccCH--HHHHHHHHHHHhh
Confidence 2689999999998643222 3455567777754
|
| >3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-14 Score=148.55 Aligned_cols=209 Identities=11% Similarity=0.037 Sum_probs=132.6
Q ss_pred cEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCC
Q 003878 539 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSR 618 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~ 618 (789)
|+||++||..+... .|.. ....|. +||.|+++|+||.|........ .....+++++.+.+..+++. .+.+
T Consensus 29 ~~vv~lHG~~~~~~--~~~~-~~~~l~-~g~~v~~~d~~G~G~s~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~ 98 (282)
T 3qvm_A 29 KTVLLAHGFGCDQN--MWRF-MLPELE-KQFTVIVFDYVGSGQSDLESFS----TKRYSSLEGYAKDVEEILVA--LDLV 98 (282)
T ss_dssp CEEEEECCTTCCGG--GGTT-THHHHH-TTSEEEECCCTTSTTSCGGGCC----TTGGGSHHHHHHHHHHHHHH--TTCC
T ss_pred CeEEEECCCCCCcc--hHHH-HHHHHh-cCceEEEEecCCCCCCCCCCCC----ccccccHHHHHHHHHHHHHH--cCCC
Confidence 89999999766543 3332 346677 5999999999998865432110 11223566666666666655 2447
Q ss_pred cEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccc---c---------------CCccchh-----hcCCCC
Q 003878 619 KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKF---T---------------IGHAWVS-----DFGCSE 675 (789)
Q Consensus 619 ~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~---~---------------~~~~~~~-----e~g~p~ 675 (789)
++.++|||+||.+++.++.++|++++++|+..|.......... . ....|.. .++.+.
T Consensus 99 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (282)
T 3qvm_A 99 NVSIIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPPDYVGGFERDDLEELINLMDKNYIGWANYLAPLVMGASH 178 (282)
T ss_dssp SEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBSBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCTTS
T ss_pred ceEEEEecccHHHHHHHHHhCchhhheEEEecCcchhccCchhhhchhccccHHHHHHHHhcchhhHHHHHHhhccCCcc
Confidence 9999999999999999999999999999999887644322100 0 0000000 011121
Q ss_pred cHHHHHH-------------------HHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhh
Q 003878 676 EEEEFYW-------------------LIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVL 736 (789)
Q Consensus 676 ~~~~~~~-------------------l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~ 736 (789)
.++..+. +........+.++ ..|+|+++|++|..+|+..+.++.+.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----------~~P~l~i~g~~D~~~~~~~~~~~~~~~~~-- 246 (282)
T 3qvm_A 179 SSELIGELSGSFCTTDPIVAKTFAKATFFSDYRSLLEDI----------STPALIFQSAKDSLASPEVGQYMAENIPN-- 246 (282)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHHHHHHHSCBCGGGGGGC----------CSCEEEEEEEECTTCCHHHHHHHHHHSSS--
T ss_pred chhhHHHHHHHHhcCCcHHHHHHHHHHhcccHHHHHhcC----------CCCeEEEEeCCCCcCCHHHHHHHHHhCCC--
Confidence 1111111 1111222333333 68999999999999999888877665532
Q ss_pred ccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 737 CTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 737 ~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
.++.+++++||...... ..+....+.+||.++.
T Consensus 247 ------------~~~~~~~~~gH~~~~~~--~~~~~~~i~~fl~~~~ 279 (282)
T 3qvm_A 247 ------------SQLELIQAEGHCLHMTD--AGLITPLLIHFIQNNQ 279 (282)
T ss_dssp ------------EEEEEEEEESSCHHHHC--HHHHHHHHHHHHHHC-
T ss_pred ------------CcEEEecCCCCcccccC--HHHHHHHHHHHHHhcC
Confidence 48899999999864322 2356677888988654
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.51 E-value=5.6e-13 Score=138.46 Aligned_cols=118 Identities=22% Similarity=0.182 Sum_probs=81.2
Q ss_pred EecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccc
Q 003878 513 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 592 (789)
Q Consensus 513 ~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~ 592 (789)
+++.|| .+|.+... +..|.||++||..+... .|... ...|.++||.|+++|.||.|.....
T Consensus 3 ~~~~~g-~~l~y~~~--------g~~~~vvllHG~~~~~~--~~~~~-~~~L~~~g~~vi~~D~~G~G~S~~~------- 63 (273)
T 1a8s_A 3 FTTRDG-TQIYYKDW--------GSGQPIVFSHGWPLNAD--SWESQ-MIFLAAQGYRVIAHDRRGHGRSSQP------- 63 (273)
T ss_dssp EECTTS-CEEEEEEE--------SCSSEEEEECCTTCCGG--GGHHH-HHHHHHTTCEEEEECCTTSTTSCCC-------
T ss_pred EecCCC-cEEEEEEc--------CCCCEEEEECCCCCcHH--HHhhH-HhhHhhCCcEEEEECCCCCCCCCCC-------
Confidence 567789 88765432 23478999999765543 34443 3445558999999999998864321
Q ss_pred cCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-CCceeEEEecCCc
Q 003878 593 AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR-PDLFGCALAHVGV 652 (789)
Q Consensus 593 ~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-pd~f~a~v~~~p~ 652 (789)
....+++++.+-+..+++. .+.+++.++|||+||.+++.++.++ |++++++|+..+.
T Consensus 64 -~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~ 121 (273)
T 1a8s_A 64 -WSGNDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAV 121 (273)
T ss_dssp -SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred -CCCCCHHHHHHHHHHHHHH--hCCCCeEEEEeChHHHHHHHHHHhcCchheeEEEEEccc
Confidence 1224555555555555544 2446899999999999998866665 9999999887653
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-13 Score=140.56 Aligned_cols=122 Identities=16% Similarity=0.160 Sum_probs=90.3
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCC
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 595 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~ 595 (789)
.|| .+|.+..+-+ ++.|+||++||..+... .|.. ....|.++||.|+++|+||.|..... ....
T Consensus 11 ~~g-~~l~~~~~g~------~~~~~vv~~hG~~~~~~--~~~~-~~~~l~~~G~~v~~~d~~G~G~s~~~------~~~~ 74 (286)
T 3qit_A 11 FGG-NQICLCSWGS------PEHPVVLCIHGILEQGL--AWQE-VALPLAAQGYRVVAPDLFGHGRSSHL------EMVT 74 (286)
T ss_dssp ETT-EEEEEEEESC------TTSCEEEEECCTTCCGG--GGHH-HHHHHHHTTCEEEEECCTTSTTSCCC------SSGG
T ss_pred cCC-ceEEEeecCC------CCCCEEEEECCCCcccc--hHHH-HHHHhhhcCeEEEEECCCCCCCCCCC------CCCC
Confidence 478 8888877643 34589999999876543 3443 34555558999999999997754321 1113
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccc
Q 003878 596 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDM 655 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~ 655 (789)
...+++..+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+..|....
T Consensus 75 ~~~~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~ 132 (286)
T 3qit_A 75 SYSSLTFLAQIDRVIQE--LPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPA 132 (286)
T ss_dssp GCSHHHHHHHHHHHHHH--SCSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCCC
T ss_pred CcCHHHHHHHHHHHHHh--cCCCCEEEEEeCHHHHHHHHHHHhChhhccEEEEecCCCCC
Confidence 44566777777766665 24468999999999999999999999999999999887654
|
| >3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-13 Score=143.34 Aligned_cols=207 Identities=13% Similarity=0.075 Sum_probs=126.3
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
++.|.||++||..+....... .....++. +||.|+++|+||.|... .....+++++.+.+..+++. .
T Consensus 41 g~~~~vv~lHG~~~~~~~~~~-~~~~~l~~-~g~~vi~~D~~G~G~s~---------~~~~~~~~~~~~~~~~~l~~--l 107 (293)
T 3hss_A 41 GTGDPVVFIAGRGGAGRTWHP-HQVPAFLA-AGYRCITFDNRGIGATE---------NAEGFTTQTMVADTAALIET--L 107 (293)
T ss_dssp CSSEEEEEECCTTCCGGGGTT-TTHHHHHH-TTEEEEEECCTTSGGGT---------TCCSCCHHHHHHHHHHHHHH--H
T ss_pred CCCCEEEEECCCCCchhhcch-hhhhhHhh-cCCeEEEEccCCCCCCC---------CcccCCHHHHHHHHHHHHHh--c
Confidence 356889999998766544331 12334455 99999999999975321 11123556665555555544 2
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc-------------ccCCccc------hhhc-----
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK-------------FTIGHAW------VSDF----- 671 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~-------------~~~~~~~------~~e~----- 671 (789)
+.+++.++|+|+||.+++.++.++|++++++|+..|......... ......+ ...+
T Consensus 108 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (293)
T 3hss_A 108 DIAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQFFNKAEAELYDSGVQLPPTYDARARLLENFSRKTL 187 (293)
T ss_dssp TCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHSCHHHH
T ss_pred CCCcEEEEeeCccHHHHHHHHHHChHHHHhhheecccccCChhhhHHHHHHHHHHhhcccchhhHHHHHHHhhhcccccc
Confidence 346899999999999999999999999999999988654321110 0000000 0000
Q ss_pred CCCCcHHHH---------------HHHHhc----CcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHH
Q 003878 672 GCSEEEEEF---------------YWLIKY----SPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATM 732 (789)
Q Consensus 672 g~p~~~~~~---------------~~l~~~----sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L 732 (789)
..+.....+ ...... .....+.++ ..|+|+++|++|..+|+..+.++.+.+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~P~lii~g~~D~~~~~~~~~~~~~~~ 257 (293)
T 3hss_A 188 NDDVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTNRLPAYRNI----------AAPVLVIGFADDVVTPPYLGREVADAL 257 (293)
T ss_dssp TCHHHHHHHHHHHHHSCCCCCHHHHHHHTSSCSSCCHHHHTTC----------CSCEEEEEETTCSSSCHHHHHHHHHHS
T ss_pred cccccHHHHHHHHhhccccccHHHHhHhhhccccchHHHHhhC----------CCCEEEEEeCCCCCCCHHHHHHHHHHC
Confidence 000000000 000000 111122233 679999999999999999888777665
Q ss_pred HHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 733 QYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
.. +++.+++++||....... .+....+.+||.+
T Consensus 258 ~~--------------~~~~~~~~~gH~~~~~~p--~~~~~~i~~fl~~ 290 (293)
T 3hss_A 258 PN--------------GRYLQIPDAGHLGFFERP--EAVNTAMLKFFAS 290 (293)
T ss_dssp TT--------------EEEEEETTCCTTHHHHSH--HHHHHHHHHHHHT
T ss_pred CC--------------ceEEEeCCCcchHhhhCH--HHHHHHHHHHHHh
Confidence 42 478999999998643222 3455677788764
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A | Back alignment and structure |
|---|
Probab=99.51 E-value=5.3e-13 Score=137.27 Aligned_cols=219 Identities=13% Similarity=0.086 Sum_probs=127.6
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCc
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQ 596 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~ 596 (789)
+| .+|.+...- .+ .|.||++||..+.. ...|.. ....|.++||.|+++|+||.|..... ......
T Consensus 10 ~g-~~l~~~~~g------~~-~~~vvllHG~~~~~-~~~~~~-~~~~l~~~g~~vi~~D~~G~G~S~~~-----~~~~~~ 74 (254)
T 2ocg_A 10 NG-VQLHYQQTG------EG-DHAVLLLPGMLGSG-ETDFGP-QLKNLNKKLFTVVAWDPRGYGHSRPP-----DRDFPA 74 (254)
T ss_dssp TT-EEEEEEEEE------CC-SEEEEEECCTTCCH-HHHCHH-HHHHSCTTTEEEEEECCTTSTTCCSS-----CCCCCT
T ss_pred CC-EEEEEEEec------CC-CCeEEEECCCCCCC-ccchHH-HHHHHhhCCCeEEEECCCCCCCCCCC-----CCCCCh
Confidence 78 777654431 12 36799999976541 122443 34556558999999999998764321 011111
Q ss_pred chH-HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc-----ccccCCccchh-
Q 003878 597 NCF-DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY-----HKFTIGHAWVS- 669 (789)
Q Consensus 597 ~~~-~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~-----~~~~~~~~~~~- 669 (789)
..+ +|+.++++++...+ .+++.++|||+||.+++.++.++|++++++|+..|...+... ........|..
T Consensus 75 ~~~~~~~~~~~~~l~~l~---~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (254)
T 2ocg_A 75 DFFERDAKDAVDLMKALK---FKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSER 151 (254)
T ss_dssp THHHHHHHHHHHHHHHTT---CSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHTTSCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhC---CCCEEEEEECHhHHHHHHHHHHChHHhhheeEeccccccChhhHHHHHHHHHHHHHHHH
Confidence 113 34444555554443 368999999999999999999999999999987764322100 00000001100
Q ss_pred -------hcCCCCcH----HHHHHHHhcC-------cccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHH
Q 003878 670 -------DFGCSEEE----EEFYWLIKYS-------PLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLAT 731 (789)
Q Consensus 670 -------e~g~p~~~----~~~~~l~~~s-------P~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~ 731 (789)
.++..... ...+.+..+. ....+.++ ..|+|+++|++|..+|+..+.++.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~P~lii~G~~D~~~~~~~~~~~~~~ 221 (254)
T 2ocg_A 152 TRKPLEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRV----------QCPALIVHGEKDPLVPRFHADFIHKH 221 (254)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHGGGGSGGGBSSGGGGGGC----------CSCEEEEEETTCSSSCHHHHHHHHHH
T ss_pred hHHHHHHHhcchhhHHHHHHHHHHHHHHHhccCCchhhhhhhcc----------cCCEEEEecCCCccCCHHHHHHHHHh
Confidence 11110000 0011111111 01122233 68999999999999999888777665
Q ss_pred HHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHH
Q 003878 732 MQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFM 779 (789)
Q Consensus 732 L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl 779 (789)
+.. .++.+++++||....... .+..+.+.+||
T Consensus 222 ~~~--------------~~~~~~~~~gH~~~~e~p--~~~~~~i~~fl 253 (254)
T 2ocg_A 222 VKG--------------SRLHLMPEGKHNLHLRFA--DEFNKLAEDFL 253 (254)
T ss_dssp STT--------------CEEEEETTCCTTHHHHTH--HHHHHHHHHHH
T ss_pred CCC--------------CEEEEcCCCCCchhhhCH--HHHHHHHHHHh
Confidence 543 378889999998643222 34555667776
|
| >1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-13 Score=143.52 Aligned_cols=122 Identities=20% Similarity=0.142 Sum_probs=80.1
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCC
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 595 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~ 595 (789)
.+| .++.+...-+ ..+.|.||++||+++.... .+. ....++. +||.|+++|.||.|..... ...
T Consensus 12 ~~g-~~l~~~~~g~-----~~~~~~vvllHG~~~~~~~-~~~-~~~~l~~-~g~~vi~~D~~G~G~S~~~-------~~~ 75 (293)
T 1mtz_A 12 VNG-IYIYYKLCKA-----PEEKAKLMTMHGGPGMSHD-YLL-SLRDMTK-EGITVLFYDQFGCGRSEEP-------DQS 75 (293)
T ss_dssp ETT-EEEEEEEECC-----SSCSEEEEEECCTTTCCSG-GGG-GGGGGGG-GTEEEEEECCTTSTTSCCC-------CGG
T ss_pred ECC-EEEEEEEECC-----CCCCCeEEEEeCCCCcchh-HHH-HHHHHHh-cCcEEEEecCCCCccCCCC-------CCC
Confidence 368 7776554321 1123779999998765432 222 2334444 8999999999998764321 011
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccc
Q 003878 596 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 654 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d 654 (789)
..+++++.+.+..+++.- ...+++.++|||+||.+++.++.++|++++++|+..|...
T Consensus 76 ~~~~~~~~~dl~~~~~~l-~~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~ 133 (293)
T 1mtz_A 76 KFTIDYGVEEAEALRSKL-FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSS 133 (293)
T ss_dssp GCSHHHHHHHHHHHHHHH-HTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSB
T ss_pred cccHHHHHHHHHHHHHHh-cCCCcEEEEEecHHHHHHHHHHHhCchhhheEEecCCccC
Confidence 134455544444444331 0225899999999999999999999999999999888655
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-13 Score=161.39 Aligned_cols=289 Identities=11% Similarity=0.005 Sum_probs=169.8
Q ss_pred eEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeE
Q 003878 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFF 215 (789)
Q Consensus 136 ~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 215 (789)
+++|||||+++ ++. .. .+|++||+++|+..... ..... . .. -..++.+.|+++ +
T Consensus 20 ~~~~s~dg~~~-~~~-~d----~~i~~~~~~~g~~~~~~-~~~~~--~-~~-----~~~~~~~SpDg~-----------~ 73 (719)
T 1z68_A 20 FPNWISGQEYL-HQS-AD----NNIVLYNIETGQSYTIL-SNRTM--K-SV-----NASNYGLSPDRQ-----------F 73 (719)
T ss_dssp CCEESSSSEEE-EEC-TT----SCEEEEESSSCCEEEEE-CHHHH--H-TT-----TCSEEEECTTSS-----------E
T ss_pred ccEECCCCeEE-EEc-CC----CCEEEEEcCCCcEEEEE-ccccc--c-cc-----ceeeEEECCCCC-----------e
Confidence 57899999644 332 12 37999999999754311 11000 0 00 023466779997 6
Q ss_pred EEeeecccc------ceeeeeeec---cc--------ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEE
Q 003878 216 YLFSLVKST------IYSFWSVVS---QF--------KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFY 278 (789)
Q Consensus 216 ~~~~s~~~g------~~~l~~~~~---~~--------~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (789)
++|.++.++ ..+||..+. .. ....++|||||+.|+|++. .+|+
T Consensus 74 la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~--------------------~~i~ 133 (719)
T 1z68_A 74 VYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQ--------------------NNIY 133 (719)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEEET--------------------TEEE
T ss_pred EEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEEEC--------------------CeEE
Confidence 777776432 234443333 11 2467999999999999842 2589
Q ss_pred EEECCCCCCCcEEEEecCCCC-e---------------eEEEEEEecCCcEEEEEEEcCCC-------------------
Q 003878 279 YHFLGTKQSEDILCWKDPEHP-K---------------YIFSGHVTEDGQYLVMCIEENCD------------------- 323 (789)
Q Consensus 279 ~~~lg~~~~~~~~~~~~~~~~-~---------------~~~~~~~SpDG~~l~~~~~~~~~------------------- 323 (789)
++++.++... .+....... . ...++.|||||++|++.+.+...
T Consensus 134 ~~~~~~g~~~--~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 211 (719)
T 1z68_A 134 LKQRPGDPPF--QITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTIN 211 (719)
T ss_dssp EESSTTSCCE--ECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEE
T ss_pred EEeCCCCCcE--EEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcccee
Confidence 9988765432 111111000 0 01268999999999998765321
Q ss_pred ----------CceEEEEEECCCCCCCcccccccCCCCccEeee------ccc-cceeEEEecCCCEEEEEECCCCCCceE
Q 003878 324 ----------PVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI------DGF-DAQYEVIANDDTVFTFLTNKDAPKYKI 386 (789)
Q Consensus 324 ----------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~------~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L 386 (789)
....|+++|++++.. .....+. ... ......|||||+.++...++.....+|
T Consensus 212 ~~yp~~g~~~~~~~l~~~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l 280 (719)
T 1z68_A 212 IPYPKAGAKNPVVRIFIIDTTYPAY-----------VGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVL 280 (719)
T ss_dssp EECCBTTSCCCEEEEEEEESSCHHH-----------HCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEE
T ss_pred ecCCCCCCCCCeeEEEEEECCCCCc-----------cceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEE
Confidence 234789999887420 0000111 111 112245999976555545555556789
Q ss_pred EEEE----CCCCCCeEEecc---CCCCceee-----eEEEecCCE-EEE-EEEeCCeEEEEEEECCCCceeeecccCCee
Q 003878 387 IRVD----LKEPNDWFEVIP---EAERDVLE-----SATAVNLNQ-MIV-SYLSDVKYVLQIRDLKNGSLLHQLPIEIGS 452 (789)
Q Consensus 387 ~~~d----l~~~~~~~~l~~---~~~~~~i~-----~v~~~~~~~-lv~-~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~ 452 (789)
+++| +++++ .+.+++ ......+. .+.|++++. +++ ....++..+|+++++++++. +.++.+...
T Consensus 281 ~~~d~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~ 358 (719)
T 1z68_A 281 SICDFREDWQTWD-CPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSGKWE 358 (719)
T ss_dssp EEEEECSSSSSEE-CCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCSSSC
T ss_pred EEEcccCCCCCCc-eEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccCceE
Confidence 9999 77664 344442 22223343 677888644 444 45567788999999986664 677655555
Q ss_pred EEEeecccCCcEEEEEEcC---CCCCcEEEEEECCCC
Q 003878 453 VNAISARREDSVVFISFTS---FLIPGIVYQCNLKTE 486 (789)
Q Consensus 453 v~~~s~s~d~~~l~~~~ss---~~~P~~ly~~dl~tg 486 (789)
+..+.++ +++.++++.+. ...-..+|.+++.++
T Consensus 359 v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g 394 (719)
T 1z68_A 359 AINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSY 394 (719)
T ss_dssp EEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred EEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence 5555555 88888877643 123356788887655
|
| >3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.7e-13 Score=139.25 Aligned_cols=221 Identities=13% Similarity=0.044 Sum_probs=133.8
Q ss_pred EEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccc
Q 003878 512 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 591 (789)
Q Consensus 512 ~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~ 591 (789)
.+...|| .+|.+...-+ +..|+||++||...... .|... ...|. ++|.|+++|.||.|....
T Consensus 8 ~~~~~~g-~~l~y~~~G~------~~~p~lvl~hG~~~~~~--~w~~~-~~~L~-~~~~vi~~D~rG~G~S~~------- 69 (266)
T 3om8_A 8 FLATSDG-ASLAYRLDGA------AEKPLLALSNSIGTTLH--MWDAQ-LPALT-RHFRVLRYDARGHGASSV------- 69 (266)
T ss_dssp EEECTTS-CEEEEEEESC------TTSCEEEEECCTTCCGG--GGGGG-HHHHH-TTCEEEEECCTTSTTSCC-------
T ss_pred EEeccCC-cEEEEEecCC------CCCCEEEEeCCCccCHH--HHHHH-HHHhh-cCcEEEEEcCCCCCCCCC-------
Confidence 3566799 8887765422 23588999999765433 34443 45666 689999999999886432
Q ss_pred ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc---------c-c-
Q 003878 592 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY---------H-K- 660 (789)
Q Consensus 592 ~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~---------~-~- 660 (789)
.....+++++.+.+..+++. ...+++.++|||+||.+++.++.++|++++++|+..+...+... . .
T Consensus 70 -~~~~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~~~~~ 146 (266)
T 3om8_A 70 -PPGPYTLARLGEDVLELLDA--LEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAAVLQA 146 (266)
T ss_dssp -CCSCCCHHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSBCCCSHHHHHHHHHHHHC
T ss_pred -CCCCCCHHHHHHHHHHHHHH--hCCCceEEEEEChHHHHHHHHHHhChHhhheeeEecCcccCCchhHHHHHHHHHHcc
Confidence 11234566666655555554 23358999999999999999999999999999987653211100 0 0
Q ss_pred ccCC-------ccchh-hc--CCCCcHHHH----------------HHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEec
Q 003878 661 FTIG-------HAWVS-DF--GCSEEEEEF----------------YWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTA 714 (789)
Q Consensus 661 ~~~~-------~~~~~-e~--g~p~~~~~~----------------~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g 714 (789)
.... ..|.. .+ ..+...+.+ ..+........+.++ ..|+|+++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i----------~~P~Lvi~G 216 (266)
T 3om8_A 147 EDMSETAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARI----------ERPTLVIAG 216 (266)
T ss_dssp SSSHHHHHHHHHHHSCHHHHHSCCHHHHHHHHHHHTSCHHHHHHHHHHHHTCBCTTTGGGC----------CSCEEEEEE
T ss_pred ccHHHHHHHHHHHhcChhhhhcChHHHHHHHHHHHhCCHHHHHHHHHHhhccchhhHhcCC----------CCCEEEEEe
Confidence 0000 00000 00 011000111 011111111222333 689999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 715 DHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 715 ~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
++|..+|+..+..+.+.+... ++.+++ +||....... .+..+.+.+||.
T Consensus 217 ~~D~~~~~~~~~~l~~~ip~a--------------~~~~i~-~gH~~~~e~p--~~~~~~i~~Fl~ 265 (266)
T 3om8_A 217 AYDTVTAASHGELIAASIAGA--------------RLVTLP-AVHLSNVEFP--QAFEGAVLSFLG 265 (266)
T ss_dssp TTCSSSCHHHHHHHHHHSTTC--------------EEEEES-CCSCHHHHCH--HHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHhCCCC--------------EEEEeC-CCCCccccCH--HHHHHHHHHHhc
Confidence 999999999988887766543 677776 7997643322 345566777773
|
| >4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.8e-14 Score=147.72 Aligned_cols=214 Identities=12% Similarity=0.033 Sum_probs=127.4
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
++.|+||++||..+... .|......++. +||.|+++|+||.|...... ......+++|+.+.+..+++. .
T Consensus 22 ~~~~~vv~lHG~~~~~~--~~~~~~~~l~~-~g~~v~~~d~~G~G~s~~~~-----~~~~~~~~~~~~~~~~~~~~~--~ 91 (279)
T 4g9e_A 22 GEGAPLLMIHGNSSSGA--IFAPQLEGEIG-KKWRVIAPDLPGHGKSTDAI-----DPDRSYSMEGYADAMTEVMQQ--L 91 (279)
T ss_dssp CCEEEEEEECCTTCCGG--GGHHHHHSHHH-HHEEEEEECCTTSTTSCCCS-----CHHHHSSHHHHHHHHHHHHHH--H
T ss_pred CCCCeEEEECCCCCchh--HHHHHHhHHHh-cCCeEEeecCCCCCCCCCCC-----CcccCCCHHHHHHHHHHHHHH--h
Confidence 35689999999876533 34443344465 89999999999987643210 011123566666666666654 2
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc----cc---------cCCc----cchh-hcCCCCcH
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH----KF---------TIGH----AWVS-DFGCSEEE 677 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~----~~---------~~~~----~~~~-e~g~p~~~ 677 (789)
+.+++.++|+|+||.+++.++.++|++.+.+++..|........ .. .... .+.. .+..+..+
T Consensus 92 ~~~~~~lvG~S~Gg~~a~~~a~~~p~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (279)
T 4g9e_A 92 GIADAVVFGWSLGGHIGIEMIARYPEMRGLMITGTPPVAREEVGQGFKSGPDMALAGQEIFSERDVESYARSTCGEPFEA 171 (279)
T ss_dssp TCCCCEEEEETHHHHHHHHHTTTCTTCCEEEEESCCCCCGGGHHHHBCCSTTGGGGGCSCCCHHHHHHHHHHHHCSSCCH
T ss_pred CCCceEEEEECchHHHHHHHHhhCCcceeEEEecCCCCCCCccchhhccchhhhhcCcccccHHHHHHHHHhhccCcccH
Confidence 34589999999999999999999999555555555543321110 00 0000 0000 11222222
Q ss_pred HHHHHHHhcCc------------------ccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHH-HHHHHhhcc
Q 003878 678 EEFYWLIKYSP------------------LHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLL-ATMQYVLCT 738 (789)
Q Consensus 678 ~~~~~l~~~sP------------------~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~-~~L~~~~~~ 738 (789)
...+.+....+ ...+..+ ..|+|+++|++|..||++.+.++. +.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----------~~P~l~i~g~~D~~~~~~~~~~~~~~~~~----- 236 (279)
T 4g9e_A 172 SLLDIVARTDGRARRIMFEKFGSGTGGNQRDIVAEA----------QLPIAVVNGRDEPFVELDFVSKVKFGNLW----- 236 (279)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHTCBCCHHHHHHHC----------CSCEEEEEETTCSSBCHHHHTTCCCSSBG-----
T ss_pred HHHHHHHhhhccchHHHHHHhhccCCchHHHHHHhc----------CCCEEEEEcCCCcccchHHHHHHhhccCC-----
Confidence 22111211110 0111222 579999999999999988776664 3222
Q ss_pred CCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 739 SLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 739 ~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
.+++.+++++||....... .+..+.+.+||.+.-+.
T Consensus 237 ---------~~~~~~~~~~gH~~~~~~p--~~~~~~i~~fl~~~~~~ 272 (279)
T 4g9e_A 237 ---------EGKTHVIDNAGHAPFREAP--AEFDAYLARFIRDCTQL 272 (279)
T ss_dssp ---------GGSCEEETTCCSCHHHHSH--HHHHHHHHHHHHHHHSS
T ss_pred ---------CCeEEEECCCCcchHHhCH--HHHHHHHHHHHHHhhhh
Confidence 2367889999998543222 35667889999887544
|
| >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.1e-13 Score=140.47 Aligned_cols=225 Identities=12% Similarity=0.027 Sum_probs=136.6
Q ss_pred EEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcc
Q 003878 511 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGG 590 (789)
Q Consensus 511 ~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~ 590 (789)
..+...+| .++.+...-|+ ..|.||++||..+.... .|.. ....|+ +||.|+++|.||.|.....
T Consensus 5 ~~~~~~~g-~~l~~~~~G~~------~~~~vvllHG~~~~~~~-~w~~-~~~~L~-~~~~vi~~Dl~G~G~S~~~----- 69 (286)
T 2yys_A 5 IGYVPVGE-AELYVEDVGPV------EGPALFVLHGGPGGNAY-VLRE-GLQDYL-EGFRVVYFDQRGSGRSLEL----- 69 (286)
T ss_dssp EEEEECSS-CEEEEEEESCT------TSCEEEEECCTTTCCSH-HHHH-HHGGGC-TTSEEEEECCTTSTTSCCC-----
T ss_pred eeEEeECC-EEEEEEeecCC------CCCEEEEECCCCCcchh-HHHH-HHHHhc-CCCEEEEECCCCCCCCCCC-----
Confidence 34455688 88877655331 34789999998765431 2333 344565 7999999999998764310
Q ss_pred cccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc-cc-------c
Q 003878 591 ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH-KF-------T 662 (789)
Q Consensus 591 ~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~-~~-------~ 662 (789)
.......+++++.+.+..+++. ...+++.++|||+||.+++.++.++|+ ++++|+..|..++.... .. .
T Consensus 70 ~~~~~~~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~ 146 (286)
T 2yys_A 70 PQDPRLFTVDALVEDTLLLAEA--LGVERFGLLAHGFGAVVALEVLRRFPQ-AEGAILLAPWVNFPWLAARLAEAAGLAP 146 (286)
T ss_dssp CSCGGGCCHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHCTT-EEEEEEESCCCBHHHHHHHHHHHTTCCC
T ss_pred ccCcccCcHHHHHHHHHHHHHH--hCCCcEEEEEeCHHHHHHHHHHHhCcc-hheEEEeCCccCcHHHHHHHHHHhcccc
Confidence 0000134566666666666654 234689999999999999999999999 99999988764321100 00 0
Q ss_pred --------------CC-ccchhh--cCCCC---cHHHH-------------HH--HHh---cCcccCCCCCCCCCCCCCC
Q 003878 663 --------------IG-HAWVSD--FGCSE---EEEEF-------------YW--LIK---YSPLHNVRRPWEQNPDKPF 704 (789)
Q Consensus 663 --------------~~-~~~~~e--~g~p~---~~~~~-------------~~--l~~---~sP~~~v~~~~~~~~~~~~ 704 (789)
.. ..+... +..+. ..+.. .. +.. +.....+.++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i--------- 217 (286)
T 2yys_A 147 LPDPEENLKEALKREEPKALFDRLMFPTPRGRMAYEWLAEGAGILGSDAPGLAFLRNGLWRLDYTPYLTPE--------- 217 (286)
T ss_dssp CSCHHHHHHHHHHHSCHHHHHHHHHCSSHHHHHHHHHHHHHTTCCCCSHHHHHHHHTTGGGCBCGGGCCCC---------
T ss_pred chhHHHHHHHHhccCChHHHHHhhhccCCccccChHHHHHHHhhccccccchhhcccccccCChhhhhhhc---------
Confidence 00 000000 00000 00000 00 011 1111122332
Q ss_pred CCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 705 QYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 705 ~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
..|+|+++|++|..+++. +.++.+ +... ++.+++++||....... .+..+.+.+||.+
T Consensus 218 -~~P~lvi~G~~D~~~~~~-~~~~~~-~~~~--------------~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~ 275 (286)
T 2yys_A 218 -RRPLYVLVGERDGTSYPY-AEEVAS-RLRA--------------PIRVLPEAGHYLWIDAP--EAFEEAFKEALAA 275 (286)
T ss_dssp -SSCEEEEEETTCTTTTTT-HHHHHH-HHTC--------------CEEEETTCCSSHHHHCH--HHHHHHHHHHHHT
T ss_pred -CCCEEEEEeCCCCcCCHh-HHHHHh-CCCC--------------CEEEeCCCCCCcChhhH--HHHHHHHHHHHHh
Confidence 679999999999999999 888877 6543 57889999998643322 3566778888875
|
| >2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-13 Score=148.83 Aligned_cols=115 Identities=15% Similarity=0.101 Sum_probs=78.4
Q ss_pred ccEEEEEcCCCCccCCC-------CCCHHHH--HHHHcCCeEEEEEeecC-CCC-CChhHHhc--cc---ccCCcchHHH
Q 003878 538 HPCLLYGYGGFNISVTP-------SFSVSRT--ILMRHLGAVFCIANIRG-GGE-YGEEWHKG--GA---LAKKQNCFDD 601 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~-------~~~~~~~--~~l~~~G~~v~~~~~RG-~g~-~g~~~~~~--~~---~~~~~~~~~D 601 (789)
.|+||++||..+..... .|..... ..|+++||.|+++|+|| .|+ .+..-... +. ......+++|
T Consensus 59 ~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~vi~~D~~G~~g~s~~~~~~~~~~g~~~~~~~~~~~~~~ 138 (377)
T 2b61_A 59 NNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTTGPSSINPQTGKPYGSQFPNIVVQD 138 (377)
T ss_dssp CCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSSCTTSBCTTTSSBCGGGCCCCCHHH
T ss_pred CCeEEEeCCCCCccccccccccchhhhhccCcccccccCCceEEEecCCCCCCCCCCCcccCccccccccccCCcccHHH
Confidence 58999999987765441 1332211 12534899999999999 343 22210000 00 0011356788
Q ss_pred HHHHHHHHHHcCCCCCCcEE-EEeeChHHHHHHHHHHhCCCceeEEEecCCccc
Q 003878 602 FISASEYLISAGYTQSRKLC-IEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 654 (789)
Q Consensus 602 ~~~~~~~L~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d 654 (789)
+.+.+..+++. .+.+++. ++|+|+||.+++.++.++|++++++|+..|...
T Consensus 139 ~~~~l~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 190 (377)
T 2b61_A 139 IVKVQKALLEH--LGISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIY 190 (377)
T ss_dssp HHHHHHHHHHH--TTCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSS
T ss_pred HHHHHHHHHHH--cCCcceeEEEEEChhHHHHHHHHHHCchhhheeEEeccCcc
Confidence 88888887765 3446888 999999999999999999999999999888543
|
| >3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-12 Score=137.39 Aligned_cols=117 Identities=17% Similarity=0.070 Sum_probs=77.7
Q ss_pred ecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccccc
Q 003878 514 PSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 593 (789)
Q Consensus 514 ~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~ 593 (789)
...+| .+|.+... ++.|.||++||..+....+. .....+.+ +||.|+++|.||.|.....
T Consensus 12 ~~~~g-~~l~y~~~--------G~g~~vvllHG~~~~~~~w~--~~~~~l~~-~g~~vi~~D~~G~G~S~~~-------- 71 (281)
T 3fob_A 12 ENQAP-IEIYYEDH--------GTGKPVVLIHGWPLSGRSWE--YQVPALVE-AGYRVITYDRRGFGKSSQP-------- 71 (281)
T ss_dssp ETTEE-EEEEEEEE--------SSSEEEEEECCTTCCGGGGT--TTHHHHHH-TTEEEEEECCTTSTTSCCC--------
T ss_pred CCCCc-eEEEEEEC--------CCCCeEEEECCCCCcHHHHH--HHHHHHHh-CCCEEEEeCCCCCCCCCCC--------
Confidence 34567 66654332 23466888999877654433 33334444 8999999999998864321
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh-CCCceeEEEecCCc
Q 003878 594 KKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQ-RPDLFGCALAHVGV 652 (789)
Q Consensus 594 ~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~-~pd~f~a~v~~~p~ 652 (789)
....+++++.+-+..+++. ...+++.++|||+||.+++.++.+ +|++++++|+..+.
T Consensus 72 ~~~~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~GG~i~~~~~a~~~p~~v~~lvl~~~~ 129 (281)
T 3fob_A 72 WEGYEYDTFTSDLHQLLEQ--LELQNVTLVGFSMGGGEVARYISTYGTDRIEKVVFAGAV 129 (281)
T ss_dssp SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred ccccCHHHHHHHHHHHHHH--cCCCcEEEEEECccHHHHHHHHHHccccceeEEEEecCC
Confidence 1234566666656666554 234689999999999877765554 58999999887654
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-12 Score=135.41 Aligned_cols=120 Identities=18% Similarity=0.162 Sum_probs=81.6
Q ss_pred EecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccc
Q 003878 513 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 592 (789)
Q Consensus 513 ~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~ 592 (789)
+++.|| .+|.+...-|+ +.|.||++||..+... .|... ...|.++||.|+++|.||.|.....
T Consensus 3 ~~~~~g-~~l~y~~~g~~------~~~~vvllHG~~~~~~--~w~~~-~~~l~~~g~~vi~~D~~G~G~S~~~------- 65 (275)
T 1a88_A 3 VTTSDG-TNIFYKDWGPR------DGLPVVFHHGWPLSAD--DWDNQ-MLFFLSHGYRVIAHDRRGHGRSDQP------- 65 (275)
T ss_dssp EECTTS-CEEEEEEESCT------TSCEEEEECCTTCCGG--GGHHH-HHHHHHTTCEEEEECCTTSTTSCCC-------
T ss_pred EEccCC-CEEEEEEcCCC------CCceEEEECCCCCchh--hHHHH-HHHHHHCCceEEEEcCCcCCCCCCC-------
Confidence 566789 88876554322 3478999999765433 34443 3445558999999999998864321
Q ss_pred cCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-CCceeEEEecCCc
Q 003878 593 AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR-PDLFGCALAHVGV 652 (789)
Q Consensus 593 ~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-pd~f~a~v~~~p~ 652 (789)
....+++++.+.+..+++. ...+++.++|||+||.+++.++.++ |++++++|+..+.
T Consensus 66 -~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~ 123 (275)
T 1a88_A 66 -STGHDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAV 123 (275)
T ss_dssp -SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCC
T ss_pred -CCCCCHHHHHHHHHHHHHH--cCCCceEEEEeccchHHHHHHHHHhCchheEEEEEecCC
Confidence 1123455555444444443 2335899999999999998877776 9999999987754
|
| >2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.6e-13 Score=139.09 Aligned_cols=219 Identities=13% Similarity=0.049 Sum_probs=133.8
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCC
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 595 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~ 595 (789)
.+| .+|.+...-+.+ .+.|.||++||..+... .|... ...|. .+|.|+++|.||.|..... ..
T Consensus 9 ~~g-~~l~y~~~g~~~----~~~~~vvllHG~~~~~~--~~~~~-~~~L~-~~~~vi~~D~~G~G~S~~~--------~~ 71 (266)
T 2xua_A 9 VNG-TELHYRIDGERH----GNAPWIVLSNSLGTDLS--MWAPQ-VAALS-KHFRVLRYDTRGHGHSEAP--------KG 71 (266)
T ss_dssp CSS-SEEEEEEESCSS----SCCCEEEEECCTTCCGG--GGGGG-HHHHH-TTSEEEEECCTTSTTSCCC--------SS
T ss_pred ECC-EEEEEEEcCCcc----CCCCeEEEecCccCCHH--HHHHH-HHHHh-cCeEEEEecCCCCCCCCCC--------CC
Confidence 478 888776653321 12589999999655433 34433 34566 6799999999998764321 12
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccc---ccc----c-c--CC-
Q 003878 596 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR---YHK----F-T--IG- 664 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~---~~~----~-~--~~- 664 (789)
..+++++.+.+..+++. ...+++.++|||+||.+++.++.++|++++++|+..|...... ... . . ..
T Consensus 72 ~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (266)
T 2xua_A 72 PYTIEQLTGDVLGLMDT--LKIARANFCGLSMGGLTGVALAARHADRIERVALCNTAARIGSPEVWVPRAVKARTEGMHA 149 (266)
T ss_dssp CCCHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCSCHHHHHHHHHHHHHHCHHH
T ss_pred CCCHHHHHHHHHHHHHh--cCCCceEEEEECHHHHHHHHHHHhChhhhheeEEecCCCCCCchHHHHHHHHHHHhcChHH
Confidence 34566666666655554 2335899999999999999999999999999998876432200 000 0 0 00
Q ss_pred --ccchhhcCCC----CcHH---------------HH----HHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCC
Q 003878 665 --HAWVSDFGCS----EEEE---------------EF----YWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDR 719 (789)
Q Consensus 665 --~~~~~e~g~p----~~~~---------------~~----~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~ 719 (789)
......|-.+ .+++ .+ ..+..+.....+.++ ..|+|+++|++|..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~P~lvi~G~~D~~ 219 (266)
T 2xua_A 150 LADAVLPRWFTADYMEREPVVLAMIRDVFVHTDKEGYASNCEAIDAADLRPEAPGI----------KVPALVISGTHDLA 219 (266)
T ss_dssp HHHHHHHHHSCHHHHHHCHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCGGGGGGC----------CSCEEEEEETTCSS
T ss_pred HHHHHHHHHcCcccccCCHHHHHHHHHHHhhCCHHHHHHHHHHHhccCchhhhccC----------CCCEEEEEcCCCCc
Confidence 0000011000 0111 11 111222222233333 68999999999999
Q ss_pred CCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 720 VVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 720 V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
+|+..+.++.+.+.. .++.+++ +||....... .+..+.+.+||.
T Consensus 220 ~~~~~~~~~~~~~~~--------------~~~~~~~-~gH~~~~e~p--~~~~~~i~~fl~ 263 (266)
T 2xua_A 220 ATPAQGRELAQAIAG--------------ARYVELD-ASHISNIERA--DAFTKTVVDFLT 263 (266)
T ss_dssp SCHHHHHHHHHHSTT--------------CEEEEES-CCSSHHHHTH--HHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhCCC--------------CEEEEec-CCCCchhcCH--HHHHHHHHHHHH
Confidence 999888777665543 2788899 9998643222 345567778874
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-13 Score=139.54 Aligned_cols=209 Identities=18% Similarity=0.200 Sum_probs=122.9
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcch-HHHHHHHHHHHHHcCCCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNC-FDDFISASEYLISAGYTQ 616 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~-~~D~~~~~~~L~~~~~~d 616 (789)
.|.||++||..+... .|.. ....|.++||.|+++|.||.|..... . ....... .+|+.+++++|.+.+.
T Consensus 16 ~~~vvllHG~~~~~~--~~~~-~~~~L~~~g~~vi~~D~~GhG~s~~~---~--~~~~~~~~~~d~~~~~~~l~~~~~-- 85 (247)
T 1tqh_A 16 ERAVLLLHGFTGNSA--DVRM-LGRFLESKGYTCHAPIYKGHGVPPEE---L--VHTGPDDWWQDVMNGYEFLKNKGY-- 85 (247)
T ss_dssp SCEEEEECCTTCCTH--HHHH-HHHHHHHTTCEEEECCCTTSSSCHHH---H--TTCCHHHHHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEECCCCCChH--HHHH-HHHHHHHCCCEEEecccCCCCCCHHH---h--cCCCHHHHHHHHHHHHHHHHHcCC--
Confidence 477999999765532 2333 34556558999999999998843111 0 0111112 2456666777766654
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCceeEEEec-CCcccc-ccccc--c-cCCccchhhcCCCCc--HHH----------
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAH-VGVMDM-LRYHK--F-TIGHAWVSDFGCSEE--EEE---------- 679 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~-~p~~d~-~~~~~--~-~~~~~~~~e~g~p~~--~~~---------- 679 (789)
+++.++|+|+||.+++.++.++| ++++|+. .|.... ..... . .....+....+.... ...
T Consensus 86 -~~~~lvG~SmGG~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (247)
T 1tqh_A 86 -EKIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMK 162 (247)
T ss_dssp -CCEEEEEETHHHHHHHHHHTTSC--CSCEEEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCCT
T ss_pred -CeEEEEEeCHHHHHHHHHHHhCC--CCeEEEEcceeecCcchhhhHHHHHHHHHhhcccccchHHHHhhhhcccCCCHH
Confidence 58999999999999999999999 6666643 343210 00000 0 000000000010000 000
Q ss_pred -HHHHHhc--CcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCC
Q 003878 680 -FYWLIKY--SPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERK 756 (789)
Q Consensus 680 -~~~l~~~--sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~ 756 (789)
...+..+ +....+.++ ..|+|+++|++|..+|+..+.++++.+. +...++.++++
T Consensus 163 ~~~~~~~~~~~~~~~l~~i----------~~P~Lii~G~~D~~~p~~~~~~~~~~~~------------~~~~~~~~~~~ 220 (247)
T 1tqh_A 163 TLKALQELIADVRDHLDLI----------YAPTFVVQARHDEMINPDSANIIYNEIE------------SPVKQIKWYEQ 220 (247)
T ss_dssp THHHHHHHHHHHHHTGGGC----------CSCEEEEEETTCSSSCTTHHHHHHHHCC------------CSSEEEEEETT
T ss_pred HHHHHHHHHHHHHhhcccC----------CCCEEEEecCCCCCCCcchHHHHHHhcC------------CCceEEEEeCC
Confidence 0001110 111233343 6799999999999999999888876654 23478999999
Q ss_pred CCcCCCCchhhHHHHHHHHHHHHHHH
Q 003878 757 AGHGVGLPTQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 757 ~gH~~~~~~~~~~~~~~~~~~fl~~~ 782 (789)
+||....... ..+..+.+.+||.+.
T Consensus 221 ~gH~~~~e~~-~~~~~~~i~~Fl~~~ 245 (247)
T 1tqh_A 221 SGHVITLDQE-KDQLHEDIYAFLESL 245 (247)
T ss_dssp CCSSGGGSTT-HHHHHHHHHHHHHHS
T ss_pred CceeeccCcc-HHHHHHHHHHHHHhc
Confidence 9998654322 135667888998753
|
| >1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=139.35 Aligned_cols=124 Identities=16% Similarity=0.142 Sum_probs=84.9
Q ss_pred EEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhc
Q 003878 510 QVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKG 589 (789)
Q Consensus 510 ~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~ 589 (789)
..+++..|| .+|.+...-+. ..|.||++||+++...... +..++...||.|+++|.||.|.....
T Consensus 16 ~~~~~~~~g-~~l~~~~~g~~------~g~~vvllHG~~~~~~~~~----~~~~~~~~~~~vi~~D~~G~G~S~~~---- 80 (317)
T 1wm1_A 16 SGWLDTGDG-HRIYWELSGNP------NGKPAVFIHGGPGGGISPH----HRQLFDPERYKVLLFDQRGCGRSRPH---- 80 (317)
T ss_dssp EEEEECSSS-CEEEEEEEECT------TSEEEEEECCTTTCCCCGG----GGGGSCTTTEEEEEECCTTSTTCBST----
T ss_pred eeEEEcCCC-cEEEEEEcCCC------CCCcEEEECCCCCcccchh----hhhhccccCCeEEEECCCCCCCCCCC----
Confidence 345666689 88865543221 2356899999876543221 12334347999999999998754211
Q ss_pred ccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 590 GALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 590 ~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
......+++++.+.+..+++. ...+++.++|||+||.+++.++.++|++++++|+..+.
T Consensus 81 --~~~~~~~~~~~~~dl~~l~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 139 (317)
T 1wm1_A 81 --ASLDNNTTWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIF 139 (317)
T ss_dssp --TCCTTCSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred --cccccccHHHHHHHHHHHHHH--cCCCcEEEEEeCHHHHHHHHHHHHCChheeeeeEeccC
Confidence 111234566777767766665 23468999999999999999999999999999987654
|
| >3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.4e-13 Score=130.07 Aligned_cols=174 Identities=11% Similarity=-0.063 Sum_probs=118.7
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
++.|.||++||..+.... .|...+...+. .++ .++.+|.+ ...++++.+.+..+++. .
T Consensus 15 g~~~~vv~~HG~~~~~~~-~~~~~~~~~~~-~~~---~v~~~~~~---------------~~~~~~~~~~~~~~~~~--~ 72 (191)
T 3bdv_A 15 SQQLTMVLVPGLRDSDDE-HWQSHWERRFP-HWQ---RIRQREWY---------------QADLDRWVLAIRRELSV--C 72 (191)
T ss_dssp HTTCEEEEECCTTCCCTT-SHHHHHHHHCT-TSE---ECCCSCCS---------------SCCHHHHHHHHHHHHHT--C
T ss_pred CCCceEEEECCCCCCchh-hHHHHHHHhcC-CeE---EEeccCCC---------------CcCHHHHHHHHHHHHHh--c
Confidence 456899999998755422 33333333333 343 34555522 33467777777777765 2
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCC
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRP 695 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~ 695 (789)
+ +++.++|+|+||.+++.++.++|++++++|+..|........ +. .....+.
T Consensus 73 ~-~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~--------------~~-------------~~~~~~~ 124 (191)
T 3bdv_A 73 T-QPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPAEPMRFEI--------------DD-------------RIQASPL 124 (191)
T ss_dssp S-SCEEEEEETHHHHHHHHHHHTTCSSEEEEEEESCCCGGGGTC--------------TT-------------TSCSSCC
T ss_pred C-CCeEEEEEChHHHHHHHHHHhcCCCccEEEEECCCccccccC--------------cc-------------ccccccC
Confidence 3 799999999999999999999999999999999876542111 00 0223333
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchh-hHHHHHHH
Q 003878 696 WEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQ-KMIDEAAD 774 (789)
Q Consensus 696 ~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~-~~~~~~~~ 774 (789)
..|+|+++|++|..||+.++.++.+.+ .. ++.+++++||....... +.-+..+.
T Consensus 125 ----------~~P~lii~g~~D~~~~~~~~~~~~~~~-~~--------------~~~~~~~~gH~~~~~~~~~~~~~~~~ 179 (191)
T 3bdv_A 125 ----------SVPTLTFASHNDPLMSFTRAQYWAQAW-DS--------------ELVDVGEAGHINAEAGFGPWEYGLKR 179 (191)
T ss_dssp ----------SSCEEEEECSSBTTBCHHHHHHHHHHH-TC--------------EEEECCSCTTSSGGGTCSSCHHHHHH
T ss_pred ----------CCCEEEEecCCCCcCCHHHHHHHHHhc-CC--------------cEEEeCCCCcccccccchhHHHHHHH
Confidence 579999999999999999988888776 22 68899999998754210 11244477
Q ss_pred HHHHHHHHhC
Q 003878 775 RYGFMAKMLG 784 (789)
Q Consensus 775 ~~~fl~~~l~ 784 (789)
+.+||.+..|
T Consensus 180 i~~fl~~~~~ 189 (191)
T 3bdv_A 180 LAEFSEILIP 189 (191)
T ss_dssp HHHHHHTTCS
T ss_pred HHHHHHHhcc
Confidence 7888876543
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=152.34 Aligned_cols=243 Identities=10% Similarity=-0.042 Sum_probs=153.7
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccccee
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFF 213 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 213 (789)
+..+++||||++|||+.+..| ++.||++++|+... ++.. +..
T Consensus 24 ~~~~~~~~DG~~la~~s~~~g----~~~lw~~~~g~~~~--lt~~---------------------~~~----------- 65 (582)
T 3o4h_A 24 KYSLQGVVDGDKLLVVGFSEG----SVNAYLYDGGETVK--LNRE---------------------PIN----------- 65 (582)
T ss_dssp EEEEEEEETTTEEEEEEEETT----EEEEEEEETTEEEE--CCSS---------------------CCS-----------
T ss_pred hheeecCCCCCeEEEEEccCC----ceeEEEEcCCCcEe--eecc---------------------ccc-----------
Confidence 678889999999999887666 45566677775543 2221 000
Q ss_pred eEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEE
Q 003878 214 FFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCW 293 (789)
Q Consensus 214 ~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~ 293 (789)
...+++|||| +++|+..... .....+||.+++....... .+.
T Consensus 66 ----------------------~~~~~~~spd--~~l~~~~~~~-------------g~~~~~l~~~~~~~~g~~~-~l~ 107 (582)
T 3o4h_A 66 ----------------------SVLDPHYGVG--RVILVRDVSK-------------GAEQHALFKVNTSRPGEEQ-RLE 107 (582)
T ss_dssp ----------------------EECEECTTCS--EEEEEEECST-------------TSCCEEEEEEETTSTTCCE-ECT
T ss_pred ----------------------ccccccCCCC--eEEEEeccCC-------------CCcceEEEEEeccCCCccc-ccc
Confidence 1478999999 5777654310 1233468888872122221 221
Q ss_pred ecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEE
Q 003878 294 KDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVF 373 (789)
Q Consensus 294 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l 373 (789)
.. . .. ...+|||||+.+++.+.... . +.++|++++. ...+..... ....|||||+.|
T Consensus 108 ~~-~-~~--~~~~~s~dg~~~~~~s~~~~--~--~~l~d~~~g~--------------~~~l~~~~~-~~~~~spDG~~l 164 (582)
T 3o4h_A 108 AV-K-PM--RILSGVDTGEAVVFTGATED--R--VALYALDGGG--------------LRELARLPG-FGFVSDIRGDLI 164 (582)
T ss_dssp TS-C-SB--EEEEEEECSSCEEEEEECSS--C--EEEEEEETTE--------------EEEEEEESS-CEEEEEEETTEE
T ss_pred CC-C-Cc--eeeeeCCCCCeEEEEecCCC--C--ceEEEccCCc--------------EEEeecCCC-ceEEECCCCCEE
Confidence 11 1 11 24689999999888765433 2 3366877642 223333222 335599999999
Q ss_pred EEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeE
Q 003878 374 TFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSV 453 (789)
Q Consensus 374 ~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v 453 (789)
++.++.......|+++|+++++ .+.+..+. ..+..++|++|++.++....++..+|++||+++|+.. .++.....+
T Consensus 165 a~~~~~~~~~~~i~~~d~~~g~-~~~l~~~~--~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~ 240 (582)
T 3o4h_A 165 AGLGFFGGGRVSLFTSNLSSGG-LRVFDSGE--GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDF 240 (582)
T ss_dssp EEEEEEETTEEEEEEEETTTCC-CEEECCSS--CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHH
T ss_pred EEEEEcCCCCeEEEEEcCCCCC-ceEeecCC--CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcCh
Confidence 9887764444779999998887 66665544 4568899999777666777777779999999987763 444333333
Q ss_pred EEee--------cccCCcEEEEEEcCCCCCcEEEEEEC
Q 003878 454 NAIS--------ARREDSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 454 ~~~s--------~s~d~~~l~~~~ss~~~P~~ly~~dl 483 (789)
..+. ++||+ .++++.+. -+++.+|++
T Consensus 241 ~~~~~~~~~~~~~spdg-~~~~~~~~---~g~~~l~~~ 274 (582)
T 3o4h_A 241 SSYRPTAITWLGYLPDG-RLAVVARR---EGRSAVFID 274 (582)
T ss_dssp HHHCCSEEEEEEECTTS-CEEEEEEE---TTEEEEEET
T ss_pred hhhhhccccceeEcCCC-cEEEEEEc---CCcEEEEEE
Confidence 3344 89999 56665543 246777777
|
| >1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-13 Score=143.29 Aligned_cols=226 Identities=14% Similarity=0.089 Sum_probs=132.2
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCC-CccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccC
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF-NISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 594 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~-~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~ 594 (789)
.+| .+|.+... + +.|.||++||.. +......|... ...|. ++|.|+++|+||.|.... ..
T Consensus 23 ~~g-~~l~y~~~---g-----~g~~vvllHG~~~~~~~~~~~~~~-~~~L~-~~~~vi~~Dl~G~G~S~~--------~~ 83 (296)
T 1j1i_A 23 AGG-VETRYLEA---G-----KGQPVILIHGGGAGAESEGNWRNV-IPILA-RHYRVIAMDMLGFGKTAK--------PD 83 (296)
T ss_dssp ETT-EEEEEEEE---C-----CSSEEEEECCCSTTCCHHHHHTTT-HHHHT-TTSEEEEECCTTSTTSCC--------CS
T ss_pred ECC-EEEEEEec---C-----CCCeEEEECCCCCCcchHHHHHHH-HHHHh-hcCEEEEECCCCCCCCCC--------CC
Confidence 478 78765432 2 236799999964 22222223322 34565 569999999999876431 11
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc-------cccCC-c-
Q 003878 595 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH-------KFTIG-H- 665 (789)
Q Consensus 595 ~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~-------~~~~~-~- 665 (789)
...+++++.+.+..+++.-.. .+++.++|+|+||.+++.++.++|++++++|+..|........ ..... .
T Consensus 84 ~~~~~~~~~~dl~~~l~~l~~-~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (296)
T 1j1i_A 84 IEYTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREG 162 (296)
T ss_dssp SCCCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCC-CCCeEEEEEChhHHHHHHHHHhChHhhhEEEEECCCCCCCCCCchHHHHhcccCCchH
Confidence 123566666665555554212 2689999999999999999999999999999887754211100 00000 0
Q ss_pred --cchhh-cCCC--CcHH----------------HHHHHH-hc-------CcccCCCCCCCCCCCCCCCCCeEEEEecCC
Q 003878 666 --AWVSD-FGCS--EEEE----------------EFYWLI-KY-------SPLHNVRRPWEQNPDKPFQYPSTLLLTADH 716 (789)
Q Consensus 666 --~~~~e-~g~p--~~~~----------------~~~~l~-~~-------sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~ 716 (789)
..... ..++ ..++ .+..+. .. .....+.++ ..|+|+++|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~P~Lii~G~~ 232 (296)
T 1j1i_A 163 MVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKV----------QVPTLVVQGKD 232 (296)
T ss_dssp HHHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTC----------CSCEEEEEETT
T ss_pred HHHHHHHhccCcccccHHHHHHHHHHhhCcchhhHHHHHHHHHHhcccccccHHHhhcC----------CCCEEEEEECC
Confidence 00000 1111 0010 011000 00 011122333 68999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCCC
Q 003878 717 DDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASW 787 (789)
Q Consensus 717 D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~ 787 (789)
|..+|+..+.++.+.+.. .++.+++++||....... .+..+.+.+||.+.++..+
T Consensus 233 D~~~~~~~~~~~~~~~~~--------------~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~~~~~~~ 287 (296)
T 1j1i_A 233 DKVVPVETAYKFLDLIDD--------------SWGYIIPHCGHWAMIEHP--EDFANATLSFLSLRVDITP 287 (296)
T ss_dssp CSSSCHHHHHHHHHHCTT--------------EEEEEESSCCSCHHHHSH--HHHHHHHHHHHHHC-----
T ss_pred CcccCHHHHHHHHHHCCC--------------CEEEEECCCCCCchhcCH--HHHHHHHHHHHhccCCcCc
Confidence 999999988877665432 478899999998643222 3566788999998877653
|
| >1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-13 Score=139.59 Aligned_cols=206 Identities=14% Similarity=0.034 Sum_probs=123.4
Q ss_pred CccEEEEEcCCCCccCCCC-CCHHHHHHHHcCCeEEEEEeecCCC--------------------CCChhHHhcccccCC
Q 003878 537 SHPCLLYGYGGFNISVTPS-FSVSRTILMRHLGAVFCIANIRGGG--------------------EYGEEWHKGGALAKK 595 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~-~~~~~~~~l~~~G~~v~~~~~RG~g--------------------~~g~~~~~~~~~~~~ 595 (789)
+.|.||++||..++..... ....+...|.++||.|+.+|.++.. +....|.... .
T Consensus 4 ~~~~vl~lHG~g~~~~~~~~~~~~l~~~l~~~g~~v~~~d~p~~~~~~~~~~~~~~~~~~~~~g~g~~~~w~~~~----~ 79 (243)
T 1ycd_A 4 QIPKLLFLHGFLQNGKVFSEKSSGIRKLLKKANVQCDYIDAPVLLEKKDLPFEMDDEKWQATLDADVNRAWFYHS----E 79 (243)
T ss_dssp CCCEEEEECCTTCCHHHHHHHTHHHHHHHHHTTCEEEEECCSEECCGGGCSSCCCHHHHHHHHHTTCCEESSCCC----S
T ss_pred cCceEEEeCCCCccHHHHHHHHHHHHHHHhhcceEEEEcCCCeeCCCcCcccccccccccccCCCCCCcccccCC----C
Confidence 5689999999765432211 0112345555469999999998321 1112333211 1
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC------CceeEEEecCCcccccccccccCCccchh
Q 003878 596 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRP------DLFGCALAHVGVMDMLRYHKFTIGHAWVS 669 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p------d~f~a~v~~~p~~d~~~~~~~~~~~~~~~ 669 (789)
.....|+.+++++|.+.-..+..+++|+|+|+||.+++.++.+++ ..+++++..+++..............+..
T Consensus 80 ~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~ 159 (243)
T 1ycd_A 80 ISHELDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISELVPDHPQFKVSVVISGYSFTEPDPEHPGELRITE 159 (243)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHCCCSEEEEETHHHHHHHHHHHHHHHHSTTCCCCSEEEEESCCCCEEECTTSTTCEEECG
T ss_pred CcchhhHHHHHHHHHHHHHhcCCeeEEEEeChHHHHHHHHHHHHhhcccCCCCceEEEEecCCCCCCcccccccccccch
Confidence 123456666666665542234468999999999999999988643 14667777666543211100000000000
Q ss_pred hcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCC---
Q 003878 670 DFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQT--- 746 (789)
Q Consensus 670 e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~--- 746 (789)
.+ . ..+..+..+ .+|+|++||.+|..||+.++.++++.+... +
T Consensus 160 ~~------------~--~~~~~~~~~----------~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~----------~g~~ 205 (243)
T 1ycd_A 160 KF------------R--DSFAVKPDM----------KTKMIFIYGASDQAVPSVRSKYLYDIYLKA----------QNGN 205 (243)
T ss_dssp GG------------T--TTTCCCTTC----------CCEEEEEEETTCSSSCHHHHHHHHHHHHHH----------TTTC
T ss_pred hH------------H--HhccCcccC----------CCCEEEEEeCCCCccCHHHHHHHHHHhhhh----------cccc
Confidence 00 0 112223333 689999999999999999999999988763 1
Q ss_pred -CcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 747 -NPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 747 -~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
.... .+++++||.+... + .....+.+||.++++.
T Consensus 206 ~~~~~-~~~~~~gH~~~~~--~--~~~~~i~~fl~~~~~~ 240 (243)
T 1ycd_A 206 KEKVL-AYEHPGGHMVPNK--K--DIIRPIVEQITSSLQE 240 (243)
T ss_dssp TTTEE-EEEESSSSSCCCC--H--HHHHHHHHHHHHHHC-
T ss_pred ccccE-EEecCCCCcCCch--H--HHHHHHHHHHHHhhhh
Confidence 1233 4556789987543 1 4677899999988764
|
| >3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=144.19 Aligned_cols=116 Identities=13% Similarity=0.053 Sum_probs=85.5
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCc
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQ 596 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~ 596 (789)
+| .++.+...-+ ...|+||++||..+.... |.. ....|+ +||.|+++|.||.|.... ....
T Consensus 18 ~g-~~l~~~~~g~------~~~~~vl~lHG~~~~~~~--~~~-~~~~l~-~~~~v~~~d~~G~G~s~~--------~~~~ 78 (299)
T 3g9x_A 18 LG-ERMHYVDVGP------RDGTPVLFLHGNPTSSYL--WRN-IIPHVA-PSHRCIAPDLIGMGKSDK--------PDLD 78 (299)
T ss_dssp TT-EEEEEEEESC------SSSCCEEEECCTTCCGGG--GTT-THHHHT-TTSCEEEECCTTSTTSCC--------CCCC
T ss_pred CC-eEEEEEecCC------CCCCEEEEECCCCccHHH--HHH-HHHHHc-cCCEEEeeCCCCCCCCCC--------CCCc
Confidence 78 8887665532 235789999998765443 333 234566 799999999999875432 1124
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 597 NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 597 ~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
.+++++.+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+..+..
T Consensus 79 ~~~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 133 (299)
T 3g9x_A 79 YFFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIR 133 (299)
T ss_dssp CCHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHSGGGEEEEEEEEECC
T ss_pred ccHHHHHHHHHHHHHH--hCCCcEEEEEeCccHHHHHHHHHhcchheeEEEEecCCc
Confidence 5677777777777765 345689999999999999999999999999999887443
|
| >1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-12 Score=134.77 Aligned_cols=122 Identities=12% Similarity=0.077 Sum_probs=85.4
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCC
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 595 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~ 595 (789)
.|| .+|.+...-+ ...|.||++||..+... .|.......|.++||.|+++|.||.|..... .....
T Consensus 8 ~~g-~~l~y~~~G~------~~~~~vvllHG~~~~~~--~w~~~~~~~L~~~G~~vi~~D~rG~G~S~~~-----~~~~~ 73 (298)
T 1q0r_A 8 SGD-VELWSDDFGD------PADPALLLVMGGNLSAL--GWPDEFARRLADGGLHVIRYDHRDTGRSTTR-----DFAAH 73 (298)
T ss_dssp ETT-EEEEEEEESC------TTSCEEEEECCTTCCGG--GSCHHHHHHHHTTTCEEEEECCTTSTTSCCC-----CTTTS
T ss_pred cCC-eEEEEEeccC------CCCCeEEEEcCCCCCcc--chHHHHHHHHHhCCCEEEeeCCCCCCCCCCC-----CCCcC
Confidence 478 8887655422 13478999999766543 4554443556668999999999998864320 00112
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 596 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
..+++++.+.+..+++. ...+++.++|||+||.+++.++.++|++++++|+..+..
T Consensus 74 ~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 129 (298)
T 1q0r_A 74 PYGFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGG 129 (298)
T ss_dssp CCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred CcCHHHHHHHHHHHHHH--hCCCceEEEEeCcHHHHHHHHHHhCchhhheeEEecccC
Confidence 34566666666665554 234689999999999999999999999999999876543
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-12 Score=135.63 Aligned_cols=120 Identities=17% Similarity=0.160 Sum_probs=82.1
Q ss_pred EecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccc
Q 003878 513 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL 592 (789)
Q Consensus 513 ~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~ 592 (789)
+++.|| .+|.+...-|+ ..|.||++||..+... .|... ...|.++||.|+++|.||.|.....
T Consensus 4 ~~~~~g-~~l~y~~~g~~------~~~~vvllHG~~~~~~--~w~~~-~~~L~~~g~~vi~~D~~G~G~S~~~------- 66 (276)
T 1zoi_A 4 VTTKDG-VQIFYKDWGPR------DAPVIHFHHGWPLSAD--DWDAQ-LLFFLAHGYRVVAHDRRGHGRSSQV------- 66 (276)
T ss_dssp EECTTS-CEEEEEEESCT------TSCEEEEECCTTCCGG--GGHHH-HHHHHHTTCEEEEECCTTSTTSCCC-------
T ss_pred EECCCC-cEEEEEecCCC------CCCeEEEECCCCcchh--HHHHH-HHHHHhCCCEEEEecCCCCCCCCCC-------
Confidence 556789 88876554322 2478999999765543 34443 3445558999999999998865321
Q ss_pred cCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-CCceeEEEecCCc
Q 003878 593 AKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR-PDLFGCALAHVGV 652 (789)
Q Consensus 593 ~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-pd~f~a~v~~~p~ 652 (789)
....+++++.+-+..+++. .+.+++.++|||+||.+++.++.++ |++++++|+..+.
T Consensus 67 -~~~~~~~~~~~d~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~ 124 (276)
T 1zoi_A 67 -WDGHDMDHYADDVAAVVAH--LGIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAV 124 (276)
T ss_dssp -SSCCSHHHHHHHHHHHHHH--HTCTTCEEEEETHHHHHHHHHHHHCTTSCCCCEEEESCC
T ss_pred -CCCCCHHHHHHHHHHHHHH--hCCCceEEEEECccHHHHHHHHHHhCHHheeeeEEecCC
Confidence 1123455555444444443 2335899999999999999877776 9999999987754
|
| >2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-12 Score=139.09 Aligned_cols=236 Identities=13% Similarity=0.084 Sum_probs=135.6
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHh
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 588 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~ 588 (789)
+...++. +| .++.+...-+ +..|+||++||+.+.... |... ...|. +||.|+++|+||.|+...
T Consensus 46 ~~~~v~~-~~-~~~~~~~~g~------~~~~~vv~lHG~~~~~~~--~~~~-~~~L~-~g~~vi~~D~~G~gG~s~---- 109 (306)
T 2r11_A 46 KSFYIST-RF-GQTHVIASGP------EDAPPLVLLHGALFSSTM--WYPN-IADWS-SKYRTYAVDIIGDKNKSI---- 109 (306)
T ss_dssp EEEEECC-TT-EEEEEEEESC------TTSCEEEEECCTTTCGGG--GTTT-HHHHH-HHSEEEEECCTTSSSSCE----
T ss_pred ceEEEec-CC-ceEEEEeeCC------CCCCeEEEECCCCCCHHH--HHHH-HHHHh-cCCEEEEecCCCCCCCCC----
Confidence 4444554 45 5676654321 245899999998766544 3332 34566 499999999999733211
Q ss_pred cccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccc------c
Q 003878 589 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKF------T 662 (789)
Q Consensus 589 ~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~------~ 662 (789)
......+++|+.+.+..+++. ...+++.++|+|+||.+++.++.++|++++++|+..|.......... .
T Consensus 110 ---~~~~~~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 184 (306)
T 2r11_A 110 ---PENVSGTRTDYANWLLDVFDN--LGIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETFLPFHHDFYKYALG 184 (306)
T ss_dssp ---ECSCCCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSSBTSCCCHHHHHHHHT
T ss_pred ---CCCCCCCHHHHHHHHHHHHHh--cCCCceeEEEECHHHHHHHHHHHhCccceeeEEEEcCccccCcccHHHHHHHhH
Confidence 111234566777766666654 23468999999999999999999999999999999987765221100 0
Q ss_pred C-Ccc----chhhc-CCC--CcHH---HHHHHHhc-CcccCCC---CCCC---CCCCCCCCCCeEEEEecCCCCCCCcHH
Q 003878 663 I-GHA----WVSDF-GCS--EEEE---EFYWLIKY-SPLHNVR---RPWE---QNPDKPFQYPSTLLLTADHDDRVVPLH 724 (789)
Q Consensus 663 ~-~~~----~~~e~-g~p--~~~~---~~~~l~~~-sP~~~v~---~~~~---~~~~~~~~~pp~Li~~g~~D~~V~~~~ 724 (789)
. ... +...+ +.. ..+. .......+ ..+.... .... ....-.....|+|+++|++|..+|+.+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~ 264 (306)
T 2r11_A 185 LTASNGVETFLNWMMNDQNVLHPIFVKQFKAGVMWQDGSRNPNPNADGFPYVFTDEELRSARVPILLLLGEHEVIYDPHS 264 (306)
T ss_dssp TTSTTHHHHHHHHHTTTCCCSCHHHHHHHHHHHHCCSSSCCCCCCTTSSSCBCCHHHHHTCCSCEEEEEETTCCSSCHHH
T ss_pred HHHHHHHHHHHHHhhCCccccccccccccHHHHHHHHhhhhhhhhccCCCCCCCHHHHhcCCCCEEEEEeCCCcccCHHH
Confidence 0 000 00000 110 1000 00000000 0000000 0000 000000125699999999999999988
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 725 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 725 ~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
+.++.+++. ..+++.+++++||....... .+..+.+.+||.
T Consensus 265 ~~~~~~~~~-------------~~~~~~~~~~~gH~~~~e~p--~~~~~~i~~fl~ 305 (306)
T 2r11_A 265 ALHRASSFV-------------PDIEAEVIKNAGHVLSMEQP--TYVNERVMRFFN 305 (306)
T ss_dssp HHHHHHHHS-------------TTCEEEEETTCCTTHHHHSH--HHHHHHHHHHHC
T ss_pred HHHHHHHHC-------------CCCEEEEeCCCCCCCcccCH--HHHHHHHHHHHh
Confidence 776665432 12478999999997643222 345566777764
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.1e-13 Score=140.92 Aligned_cols=220 Identities=13% Similarity=0.030 Sum_probs=131.1
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccC-CCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccC
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV-TPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 594 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~-~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~ 594 (789)
.+| .+|.+... ++.|.||++||...... ...|... ...|. +||.|+++|.||.|..... ..
T Consensus 12 ~~g-~~l~y~~~--------G~g~~vvllHG~~~~~~~~~~w~~~-~~~L~-~~~~vi~~Dl~G~G~S~~~-------~~ 73 (282)
T 1iup_A 12 AAG-VLTNYHDV--------GEGQPVILIHGSGPGVSAYANWRLT-IPALS-KFYRVIAPDMVGFGFTDRP-------EN 73 (282)
T ss_dssp ETT-EEEEEEEE--------CCSSEEEEECCCCTTCCHHHHHTTT-HHHHT-TTSEEEEECCTTSTTSCCC-------TT
T ss_pred ECC-EEEEEEec--------CCCCeEEEECCCCCCccHHHHHHHH-HHhhc-cCCEEEEECCCCCCCCCCC-------CC
Confidence 368 77765432 23467999999533222 1133332 24455 8999999999998754311 11
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc-------ccccCC-c-
Q 003878 595 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY-------HKFTIG-H- 665 (789)
Q Consensus 595 ~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~-------~~~~~~-~- 665 (789)
...+++++.+.+..+++. ...+++.++|||+||.+++.++.++|++++++|+..|....... ...... .
T Consensus 74 ~~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~GG~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (282)
T 1iup_A 74 YNYSKDSWVDHIIGIMDA--LEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGYTPSIEN 151 (282)
T ss_dssp CCCCHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESCCCSCCCCCHHHHHHHTCCSCHHH
T ss_pred CCCCHHHHHHHHHHHHHH--hCCCceEEEEECHhHHHHHHHHHHChHHHHHHHeeCCccCCCCCCHHHHHHhcCCCcHHH
Confidence 123566666666666654 23468999999999999999999999999999988765421100 000000 0
Q ss_pred --cchhh-------------------cCCCCcHHHHHHHHh---------cC-cccCCCCCCCCCCCCCCCCCeEEEEec
Q 003878 666 --AWVSD-------------------FGCSEEEEEFYWLIK---------YS-PLHNVRRPWEQNPDKPFQYPSTLLLTA 714 (789)
Q Consensus 666 --~~~~e-------------------~g~p~~~~~~~~l~~---------~s-P~~~v~~~~~~~~~~~~~~pp~Li~~g 714 (789)
.+... ...|.....+..+.. +. +...+.++ ..|+|+++|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~P~lii~G 221 (282)
T 1iup_A 152 MRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTL----------PNETLIIHG 221 (282)
T ss_dssp HHHHHHHHCSSGGGCCHHHHHHHHHHHTSTTHHHHHHHHSCSSTHHHHHHHCCCHHHHTTC----------CSCEEEEEE
T ss_pred HHHHHHHhhcCcccCCHHHHHHHHhhccChHHHHHHHHHHhccccccccccccchhhhhhc----------CCCEEEEec
Confidence 00000 011110001100000 00 00122333 679999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 715 DHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 715 ~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
++|..+|+..+.++.+.+.. .++.+++++||....... .+..+.+.+||.+
T Consensus 222 ~~D~~~p~~~~~~~~~~~~~--------------~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~ 272 (282)
T 1iup_A 222 REDQVVPLSSSLRLGELIDR--------------AQLHVFGRCGHWTQIEQT--DRFNRLVVEFFNE 272 (282)
T ss_dssp TTCSSSCHHHHHHHHHHCTT--------------EEEEEESSCCSCHHHHSH--HHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHhCCC--------------CeEEEECCCCCCccccCH--HHHHHHHHHHHhc
Confidence 99999999888777665432 478999999998643222 3556678888875
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-12 Score=139.33 Aligned_cols=260 Identities=12% Similarity=0.026 Sum_probs=156.2
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCce-EEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSD-WATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYL 208 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~-~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (789)
+...|..++|||||++||-+.+....- ...|++|+..++.......... ..|..
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~---~~~~~---------------------- 95 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAG---VQTEA---------------------- 95 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEE---EECSS----------------------
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEeccc---CCCCC----------------------
Confidence 445689999999999999655322211 3579999998885433111110 00000
Q ss_pred ccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC
Q 003878 209 RGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE 288 (789)
Q Consensus 209 ~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~ 288 (789)
....++|+||++.|. ...+ ..|++|++.++...
T Consensus 96 ---------------------------~V~~~~~s~d~~~l~-~s~d-------------------g~v~lWd~~~~~~~ 128 (357)
T 4g56_B 96 ---------------------------GVTDVAWVSEKGILV-ASDS-------------------GAVELWEILEKESL 128 (357)
T ss_dssp ---------------------------CEEEEEEETTTEEEE-EETT-------------------SCEEEC--------
T ss_pred ---------------------------CEEEEEEcCCCCEEE-EECC-------------------CEEEEeecccccee
Confidence 146899999986553 3221 24788887665432
Q ss_pred cEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEe
Q 003878 289 DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIA 367 (789)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s 367 (789)
....+....+...+..++|+|||++|+....+ ..|.++|+.++. ....+........ ..|+
T Consensus 129 ~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d-----g~v~iwd~~~~~-------------~~~~~~~h~~~v~~v~~s 190 (357)
T 4g56_B 129 LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD-----FSVKVWDLSQKA-------------VLKSYNAHSSEVNCVAAC 190 (357)
T ss_dssp CCCCEEECCCSSCEEEEEECSSSSEEEEEETT-----SCEEEEETTTTE-------------EEEEECCCSSCEEEEEEC
T ss_pred EEEeeccCCCCCCEEEEEECCCCCEEEEEeCC-----CeEEEEECCCCc-------------EEEEEcCCCCCEEEEEEc
Confidence 22222222334457789999999999866533 348888988742 1222222222222 3378
Q ss_pred cCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeec
Q 003878 368 NDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQL 446 (789)
Q Consensus 368 ~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l 446 (789)
++++.+++.... +..|..+|+.+++....+........+..++++++ +.+++....++ .|++||+.+++..+.+
T Consensus 191 ~~~~~~~~s~~~---dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~--~i~~wd~~~~~~~~~~ 265 (357)
T 4g56_B 191 PGKDTIFLSCGE---DGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG--NVSLVNIKNPDSAQTS 265 (357)
T ss_dssp TTCSSCEEEEET---TSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS--CEEEEESSCGGGCEEE
T ss_pred cCCCceeeeecc---CCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeeccc--ceeEEECCCCcEeEEE
Confidence 888755544433 35788899987752222222222355778888874 56777777776 6889999888776667
Q ss_pred ccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 447 PIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 447 ~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
......+..++++|++..++++.+. -.+++.||+.+++
T Consensus 266 ~~~~~~v~~l~~sp~~~~~lasgs~---D~~i~iwd~~~~~ 303 (357)
T 4g56_B 266 AVHSQNITGLAYSYHSSPFLASISE---DCTVAVLDADFSE 303 (357)
T ss_dssp CCCSSCEEEEEECSSSSCCEEEEET---TSCEEEECTTSCE
T ss_pred eccceeEEEEEEcCCCCCEEEEEeC---CCEEEEEECCCCc
Confidence 6666778889999998766655432 3579999998874
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A | Back alignment and structure |
|---|
Probab=99.45 E-value=5.4e-13 Score=140.25 Aligned_cols=208 Identities=13% Similarity=-0.006 Sum_probs=125.1
Q ss_pred ccEEEEEcCCC-CccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 538 HPCLLYGYGGF-NISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 538 ~P~ll~~hGg~-~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
.|.||++||.. +......|.......|. ..|.|+++|.||.|..... .....+++++.+.+..+++. ..
T Consensus 33 g~~vvllHG~~~~~~~~~~w~~~~~~~L~-~~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~--l~ 102 (286)
T 2puj_A 33 GETVIMLHGGGPGAGGWSNYYRNVGPFVD-AGYRVILKDSPGFNKSDAV-------VMDEQRGLVNARAVKGLMDA--LD 102 (286)
T ss_dssp SSEEEEECCCSTTCCHHHHHTTTHHHHHH-TTCEEEEECCTTSTTSCCC-------CCSSCHHHHHHHHHHHHHHH--TT
T ss_pred CCcEEEECCCCCCCCcHHHHHHHHHHHHh-ccCEEEEECCCCCCCCCCC-------CCcCcCHHHHHHHHHHHHHH--hC
Confidence 47899999973 22222233332214566 5699999999998764321 11134677776666666654 23
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc-c--c---------c--cCCc----cchhhc-CCC--C
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY-H--K---------F--TIGH----AWVSDF-GCS--E 675 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~-~--~---------~--~~~~----~~~~e~-g~p--~ 675 (789)
.+++.++|||+||.+++.++.++|++++++|+..|....... . . . .... .+...+ ..+ .
T Consensus 103 ~~~~~lvGhS~GG~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (286)
T 2puj_A 103 IDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLI 182 (286)
T ss_dssp CCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGGGC
T ss_pred CCceEEEEECHHHHHHHHHHHhChHhhheEEEECccccCCCcccccchhhHHHHHHHhhCCcHHHHHHHHHHHhcCCccC
Confidence 468999999999999999999999999999998775421100 0 0 0 0000 000000 111 0
Q ss_pred cHH--------------HHHHHHh---------cCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHH
Q 003878 676 EEE--------------EFYWLIK---------YSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATM 732 (789)
Q Consensus 676 ~~~--------------~~~~l~~---------~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L 732 (789)
.++ ....+.. +.....+.++ ..|+|+++|++|..+|+..+.++.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~P~Lii~G~~D~~~p~~~~~~~~~~~ 252 (286)
T 2puj_A 183 TEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEI----------KAKTFITWGRDDRFVPLDHGLKLLWNI 252 (286)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGC----------CSCEEEEEETTCSSSCTHHHHHHHHHS
T ss_pred CHHHHHHHHHHhhcCHHHHHHHHHHHhhhhccccchhhHHhhc----------CCCEEEEEECCCCccCHHHHHHHHHHC
Confidence 011 0111110 0111122333 679999999999999999888776655
Q ss_pred HHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 733 QYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
.. .++.+++++||....... .+..+.+.+||.+
T Consensus 253 ~~--------------~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~ 285 (286)
T 2puj_A 253 DD--------------ARLHVFSKCGAWAQWEHA--DEFNRLVIDFLRH 285 (286)
T ss_dssp SS--------------EEEEEESSCCSCHHHHTH--HHHHHHHHHHHHH
T ss_pred CC--------------CeEEEeCCCCCCccccCH--HHHHHHHHHHHhc
Confidence 32 478999999998643222 3456677888864
|
| >1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-13 Score=140.18 Aligned_cols=222 Identities=13% Similarity=0.045 Sum_probs=129.3
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCC-CccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccccc
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF-NISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 593 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~-~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~ 593 (789)
..+| .++.+...-+ ...|+||++||.. +......|... ...|. .+|.|+++|.||.|..... .
T Consensus 13 ~~~g-~~l~y~~~g~------~g~p~vvllHG~~~~~~~~~~~~~~-~~~L~-~~~~vi~~D~~G~G~S~~~-------~ 76 (285)
T 1c4x_A 13 PSGT-LASHALVAGD------PQSPAVVLLHGAGPGAHAASNWRPI-IPDLA-ENFFVVAPDLIGFGQSEYP-------E 76 (285)
T ss_dssp CCTT-SCEEEEEESC------TTSCEEEEECCCSTTCCHHHHHGGG-HHHHH-TTSEEEEECCTTSTTSCCC-------S
T ss_pred EECC-EEEEEEecCC------CCCCEEEEEeCCCCCCcchhhHHHH-HHHHh-hCcEEEEecCCCCCCCCCC-------C
Confidence 4578 7776543311 1347799999963 22222233333 34556 5699999999998754321 1
Q ss_pred CCcchHHHH----HHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc--------ccc
Q 003878 594 KKQNCFDDF----ISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY--------HKF 661 (789)
Q Consensus 594 ~~~~~~~D~----~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~--------~~~ 661 (789)
....+++++ .+.+..+++. ...+++.++|||+||.+++.++.++|++++++|+..|....... ...
T Consensus 77 ~~~~~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~ 154 (285)
T 1c4x_A 77 TYPGHIMSWVGMRVEQILGLMNH--FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAF 154 (285)
T ss_dssp SCCSSHHHHHHHHHHHHHHHHHH--HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTG
T ss_pred CcccchhhhhhhHHHHHHHHHHH--hCCCccEEEEEChHHHHHHHHHHhChHHhheEEEeccCCCCCCccchhHHHHHHH
Confidence 112345555 5555544443 12368999999999999999999999999999998775421100 000
Q ss_pred -c-CCc----cchhh-cCCCC----cHH-------------HHHHHHh-c----C-------cccCCCCCCCCCCCCCCC
Q 003878 662 -T-IGH----AWVSD-FGCSE----EEE-------------EFYWLIK-Y----S-------PLHNVRRPWEQNPDKPFQ 705 (789)
Q Consensus 662 -~-~~~----~~~~e-~g~p~----~~~-------------~~~~l~~-~----s-------P~~~v~~~~~~~~~~~~~ 705 (789)
. ... .+... ..++. .++ ....+.. + . +...+.++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i---------- 224 (285)
T 1c4x_A 155 YADPRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRL---------- 224 (285)
T ss_dssp GGSCCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTC----------
T ss_pred hccccHHHHHHHHHHhhcCcccccCcHHHHHHHHHhccCHHHHHHHHHHhccccccccccccchhhhccC----------
Confidence 0 000 00000 01110 111 1111110 0 0 00112232
Q ss_pred CCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 706 YPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 706 ~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
..|+|+++|++|..+|+..+.++.+.+. ..++.+++++||....... .+..+.+.+||.
T Consensus 225 ~~P~lii~G~~D~~~p~~~~~~~~~~~~--------------~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~ 283 (285)
T 1c4x_A 225 PHDVLVFHGRQDRIVPLDTSLYLTKHLK--------------HAELVVLDRCGHWAQLERW--DAMGPMLMEHFR 283 (285)
T ss_dssp CSCEEEEEETTCSSSCTHHHHHHHHHCS--------------SEEEEEESSCCSCHHHHSH--HHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCeeeCHHHHHHHHHhCC--------------CceEEEeCCCCcchhhcCH--HHHHHHHHHHHh
Confidence 6799999999999999998887765543 2478999999998643222 345566778875
|
| >2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-13 Score=153.02 Aligned_cols=116 Identities=11% Similarity=0.049 Sum_probs=77.3
Q ss_pred CccEEEEEcCCCCccCCCC-CCHHHH--HHHHcCCeEEEEEeecCC--CCCChhHHhc--cc-----ccCCcchHHHHHH
Q 003878 537 SHPCLLYGYGGFNISVTPS-FSVSRT--ILMRHLGAVFCIANIRGG--GEYGEEWHKG--GA-----LAKKQNCFDDFIS 604 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~-~~~~~~--~~l~~~G~~v~~~~~RG~--g~~g~~~~~~--~~-----~~~~~~~~~D~~~ 604 (789)
+.|+||++||..+...... |..... ..|..+||.|+++|.||+ |..+..-... +. ......+++|+.+
T Consensus 108 ~~p~vvllHG~~~~~~~~~~w~~~~~~~~~L~~~~~~Vi~~D~~G~~~G~S~~~~~~~~~~~~~~~~~~f~~~t~~~~a~ 187 (444)
T 2vat_A 108 RDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSPFGSAGPCSPDPDAEGQRPYGAKFPRTTIRDDVR 187 (444)
T ss_dssp SCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCSSSSSSTTSBCTTTC--CBCGGGCCCCCHHHHHH
T ss_pred CCCeEEEECCCCcccchhhHHHHhcCccchhhccCCEEEEecCCCCCCCCCCCCCCCcccccccccccccccccHHHHHH
Confidence 3589999999877654411 332211 124348999999999994 4332110000 00 0011246777777
Q ss_pred HHHHHHHcCCCCCCc-EEEEeeChHHHHHHHHHHhCCCceeEEEecCCccc
Q 003878 605 ASEYLISAGYTQSRK-LCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 654 (789)
Q Consensus 605 ~~~~L~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d 654 (789)
.+..+++. ...++ ++++|||+||.+++.++.++|++++++|+..+...
T Consensus 188 dl~~ll~~--l~~~~~~~lvGhSmGG~ial~~A~~~p~~v~~lVli~~~~~ 236 (444)
T 2vat_A 188 IHRQVLDR--LGVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSCR 236 (444)
T ss_dssp HHHHHHHH--HTCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCSB
T ss_pred HHHHHHHh--cCCccceEEEEECHHHHHHHHHHHhChHhhheEEEEecccc
Confidence 77777665 23457 99999999999999999999999999999887654
|
| >1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.9e-12 Score=134.14 Aligned_cols=124 Identities=15% Similarity=0.038 Sum_probs=84.7
Q ss_pred EEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhc
Q 003878 510 QVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKG 589 (789)
Q Consensus 510 ~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~ 589 (789)
...++..+| .++.+...-+ ...|.||++||+++...... +..++..+||.|+++|.||.|.....
T Consensus 13 ~~~~~~~~g-~~l~y~~~G~------~~g~pvvllHG~~~~~~~~~----~~~~~~~~~~~vi~~D~~G~G~S~~~---- 77 (313)
T 1azw_A 13 QGSLKVDDR-HTLYFEQCGN------PHGKPVVMLHGGPGGGCNDK----MRRFHDPAKYRIVLFDQRGSGRSTPH---- 77 (313)
T ss_dssp EEEEECSSS-CEEEEEEEEC------TTSEEEEEECSTTTTCCCGG----GGGGSCTTTEEEEEECCTTSTTSBST----
T ss_pred cceEEcCCC-CEEEEEecCC------CCCCeEEEECCCCCccccHH----HHHhcCcCcceEEEECCCCCcCCCCC----
Confidence 344566688 8886654422 12356899999876442211 12334347999999999998764211
Q ss_pred ccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 590 GALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 590 ~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
......+++++.+.+..+++. ..-+++.++|||+||.+++.++.++|++++++|+..+.
T Consensus 78 --~~~~~~~~~~~~~dl~~l~~~--l~~~~~~lvGhSmGg~ia~~~a~~~p~~v~~lvl~~~~ 136 (313)
T 1azw_A 78 --ADLVDNTTWDLVADIERLRTH--LGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIF 136 (313)
T ss_dssp --TCCTTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred --cccccccHHHHHHHHHHHHHH--hCCCceEEEEECHHHHHHHHHHHhChhheeEEEEeccc
Confidence 111234566776666666655 23358999999999999999999999999999987654
|
| >1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-12 Score=135.46 Aligned_cols=117 Identities=12% Similarity=-0.014 Sum_probs=78.9
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccC
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 594 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~ 594 (789)
..+| .+|.+... + ..|.||++||..+... .|... ...|.++||.|+++|+||.|..... .
T Consensus 9 ~~~g-~~l~y~~~---g-----~~~pvvllHG~~~~~~--~~~~~-~~~L~~~g~~vi~~D~~G~G~S~~~--------~ 68 (279)
T 1hkh_A 9 NSTP-IELYYEDQ---G-----SGQPVVLIHGYPLDGH--SWERQ-TRELLAQGYRVITYDRRGFGGSSKV--------N 68 (279)
T ss_dssp TTEE-EEEEEEEE---S-----SSEEEEEECCTTCCGG--GGHHH-HHHHHHTTEEEEEECCTTSTTSCCC--------S
T ss_pred CCCC-eEEEEEec---C-----CCCcEEEEcCCCchhh--HHhhh-HHHHHhCCcEEEEeCCCCCCCCCCC--------C
Confidence 3467 66654332 2 1244899999766533 34443 3455558999999999998764321 1
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC-ceeEEEecCCcc
Q 003878 595 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD-LFGCALAHVGVM 653 (789)
Q Consensus 595 ~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd-~f~a~v~~~p~~ 653 (789)
...+++++.+.+..+++. .+.+++.++|||+||.+++.++.++|+ +++++|+..|+.
T Consensus 69 ~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~ 126 (279)
T 1hkh_A 69 TGYDYDTFAADLHTVLET--LDLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASLE 126 (279)
T ss_dssp SCCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCC
T ss_pred CCCCHHHHHHHHHHHHHh--cCCCceEEEEeChhHHHHHHHHHHcCccceeeEEEEccCC
Confidence 223455554444444443 234689999999999999999999999 999999887643
|
| >4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.6e-13 Score=141.34 Aligned_cols=251 Identities=12% Similarity=0.059 Sum_probs=149.1
Q ss_pred cEEEEEEecC-CCceEEEEEEEecCCCC-----CCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeec--C
Q 003878 507 HVHQVFVPSK-DGSTKIPMFIVSKKNIK-----LDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIR--G 578 (789)
Q Consensus 507 ~~~~~~~~s~-dg~~~i~~~l~~p~~~~-----~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~R--G 578 (789)
...++++.|. -| .++.+.+|.|++.. ++++.|+|.+.||..+....+.-......++++.|.++++++.. +
T Consensus 13 ~~~~~~~~S~~l~-~~~~~~VyLPp~y~~~~~~~~~~~PVLYlLhG~~~~~~~w~~~~~~~~~~~~~~~~~v~p~~~p~~ 91 (299)
T 4fol_A 13 RLIKLSHNSNSTK-TSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAFWQFQADKYGFAIVFPDTSPRG 91 (299)
T ss_dssp EEEEEEEECTTTS-SEEEEEEEECGGGGCC------CBCEEEEECCTTCCHHHHHHHSCHHHHHHHHTCEEEEECSSCCS
T ss_pred EEEEEEEECcccC-CceEEEEEcCCCCCccccccCCCcCEEEEECCCCCChHHHHHhchHhHHHHHcCchhhccCCCcce
Confidence 3456677764 57 89999999998753 35689999999998765433221122356677789999998742 1
Q ss_pred CCC-----------CChhHHhccccc--CCcchH-----HHHHHHHHHHH----HcCCCCCCcEEEEeeChHHHHHHHHH
Q 003878 579 GGE-----------YGEEWHKGGALA--KKQNCF-----DDFISASEYLI----SAGYTQSRKLCIEGGSNGGLLVGACI 636 (789)
Q Consensus 579 ~g~-----------~g~~~~~~~~~~--~~~~~~-----~D~~~~~~~L~----~~~~~d~~~i~i~G~S~GG~l~~~~~ 636 (789)
-.. .+..++...... .+...+ ++++..++.-. .+...++++.+|.|+||||+-|+.++
T Consensus 92 ~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~l~~EL~~~i~~~f~~~~~r~~~~r~~~~i~G~SMGG~gAl~~a 171 (299)
T 4fol_A 92 DEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGISMGGYGAICGY 171 (299)
T ss_dssp TTSCCCTTCCSSSBTTBCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEBTHHHHHHHHHH
T ss_pred eecCCCcccccccccCCccccccccCccccCccHHHHHHHHhHHHHHHhcccccccccccccceEEEecCchHHHHHHHH
Confidence 100 011111111100 011122 33333333221 12235678999999999999999999
Q ss_pred HhC--CCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEec
Q 003878 637 NQR--PDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTA 714 (789)
Q Consensus 637 ~~~--pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g 714 (789)
.++ |++|+++.+.+|.++........ ..+...+|... + ...+++|...+++. .....++++|.+|
T Consensus 172 l~~~~~~~~~~~~s~s~~~~p~~~~~~~--~~~~~~~g~~~--~---~~~~~d~~~l~~~~------~~~~~~~i~id~G 238 (299)
T 4fol_A 172 LKGYSGKRYKSCSAFAPIVNPSNVPWGQ--KAFKGYLGEEK--A---QWEAYDPCLLIKNI------RHVGDDRILIHVG 238 (299)
T ss_dssp HHTGGGTCCSEEEEESCCCCGGGSHHHH--HHHHHHTC----------CGGGCHHHHGGGS------CCCTTCCEEEEEE
T ss_pred HhCCCCCceEEEEecccccCcccccccc--cccccccccch--h---hhhhcCHHHHHHhc------ccCCCCceEEEec
Confidence 875 78999999999988754322100 00111223221 1 11334444333321 0013578999999
Q ss_pred CCCCCCCcH-HHHHHHHHHHHhhccCCCCCCCCCc--EEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 715 DHDDRVVPL-HSLKLLATMQYVLCTSLENSPQTNP--IIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 715 ~~D~~V~~~-~~~~~~~~L~~~~~~~~~~~~~~~~--~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
+.|...... .+..|.++++++ |.+ ++++..+|.+|... -......+.++|..++||+
T Consensus 239 ~~D~f~~~~l~~~~f~~a~~~~----------g~~~~~~~r~~~GydHsy~----f~~~fi~dhl~fha~~Lgl 298 (299)
T 4fol_A 239 DSDPFLEEHLKPELLLEAVKAT----------SWQDYVEIKKVHGFDHSYY----FVSTFVPEHAEFHARNLGL 298 (299)
T ss_dssp TTCTTHHHHTCTHHHHHHHTTS----------TTTTCEEEEEETTCCSSHH----HHHHHHHHHHHHHHHHTTC
T ss_pred CCCcchhhhcCHHHHHHHHHhc----------CCCceEEEEeCCCCCCCHH----HHHHHHHHHHHHHHHhcCC
Confidence 999875322 246788888876 655 88999998899742 1245677889999999986
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-12 Score=135.80 Aligned_cols=206 Identities=15% Similarity=0.036 Sum_probs=123.7
Q ss_pred cEEEEEcCCC-CccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 539 PCLLYGYGGF-NISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 539 P~ll~~hGg~-~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
|.||++||.. +......|.......|. ++|.|+++|+||.|..... .....+++++.+.+..+++. .+.
T Consensus 37 ~~vvllHG~~~~~~~~~~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~l~~~l~~--l~~ 106 (289)
T 1u2e_A 37 ETVVLLHGSGPGATGWANFSRNIDPLVE-AGYRVILLDCPGWGKSDSV-------VNSGSRSDLNARILKSVVDQ--LDI 106 (289)
T ss_dssp SEEEEECCCSTTCCHHHHTTTTHHHHHH-TTCEEEEECCTTSTTSCCC-------CCSSCHHHHHHHHHHHHHHH--TTC
T ss_pred ceEEEECCCCcccchhHHHHHhhhHHHh-cCCeEEEEcCCCCCCCCCC-------CccccCHHHHHHHHHHHHHH--hCC
Confidence 3899999964 22222233333325566 5699999999998764321 11135677777777776665 234
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc---c---------c--cCCc----cchhh-cCCC--Cc
Q 003878 618 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH---K---------F--TIGH----AWVSD-FGCS--EE 676 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~---~---------~--~~~~----~~~~e-~g~p--~~ 676 (789)
+++.++|||+||.+++.++.++|++++++|+..|........ . . .... .+... ...+ ..
T Consensus 107 ~~~~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
T 1u2e_A 107 AKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLT 186 (289)
T ss_dssp CCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHTTSSCTTSCC
T ss_pred CceEEEEECHhHHHHHHHHHHCHHhhhEEEEECCCccccccccccchhhHHHHHHHHhcchHHHHHHHHHHhhcCcccCC
Confidence 689999999999999999999999999999887654211000 0 0 0000 00000 0111 00
Q ss_pred HH--------------HHHHHH-hc--C------cccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHH
Q 003878 677 EE--------------EFYWLI-KY--S------PLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQ 733 (789)
Q Consensus 677 ~~--------------~~~~l~-~~--s------P~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~ 733 (789)
++ .+..+. .+ . ....+.++ ..|+|+++|++|..+|+..+.++.+.+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~P~lii~G~~D~~~~~~~~~~~~~~~~ 256 (289)
T 1u2e_A 187 DALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEI----------KAQTLIVWGRNDRFVPMDAGLRLLSGIA 256 (289)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHCSCCSCCCGGGGGGC----------CSCEEEEEETTCSSSCTHHHHHHHHHST
T ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHhccccccchhhHHhhc----------CCCeEEEeeCCCCccCHHHHHHHHhhCC
Confidence 11 111110 10 0 11122222 6799999999999999999888776654
Q ss_pred HhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 734 YVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
. .++.+++++||....... .+..+.+.+||.
T Consensus 257 ~--------------~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~ 287 (289)
T 1u2e_A 257 G--------------SELHIFRDCGHWAQWEHA--DAFNQLVLNFLA 287 (289)
T ss_dssp T--------------CEEEEESSCCSCHHHHTH--HHHHHHHHHHHT
T ss_pred C--------------cEEEEeCCCCCchhhcCH--HHHHHHHHHHhc
Confidence 3 378889999998643222 244556777764
|
| >3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.8e-13 Score=143.49 Aligned_cols=202 Identities=16% Similarity=0.106 Sum_probs=123.9
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
.|+||++||..+.... | ..++...||.|+++|+||.|.... ......+++++.+.+..+++. .+.
T Consensus 81 ~~~vv~~hG~~~~~~~--~----~~~~~~lg~~Vi~~D~~G~G~S~~-------~~~~~~~~~~~a~dl~~~l~~--l~~ 145 (330)
T 3p2m_A 81 APRVIFLHGGGQNAHT--W----DTVIVGLGEPALAVDLPGHGHSAW-------REDGNYSPQLNSETLAPVLRE--LAP 145 (330)
T ss_dssp CCSEEEECCTTCCGGG--G----HHHHHHSCCCEEEECCTTSTTSCC-------CSSCBCCHHHHHHHHHHHHHH--SST
T ss_pred CCeEEEECCCCCccch--H----HHHHHHcCCeEEEEcCCCCCCCCC-------CCCCCCCHHHHHHHHHHHHHH--hCC
Confidence 5789999998665332 2 334444699999999999775321 122345566776666666655 345
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc------------------ccCCccchhhc--CCC-Cc
Q 003878 618 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK------------------FTIGHAWVSDF--GCS-EE 676 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~------------------~~~~~~~~~e~--g~p-~~ 676 (789)
+++.++|+|+||.+++.++.++|++++++|+..|......... +.........+ ..+ ..
T Consensus 146 ~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (330)
T 3p2m_A 146 GAEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPSALQRHAELTAEQRGTVALMHGEREFPSFQAMLDLTIAAAPHRD 225 (330)
T ss_dssp TCCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCHHHHHHHHHHTCC-----------CCBSCHHHHHHHHHHHCTTSC
T ss_pred CCcEEEEECHhHHHHHHHHHhChhhcceEEEEcCCCccchhhhhhhhhhhhhhhhhcCCccccCHHHHHHHHHhcCCCCC
Confidence 7899999999999999999999999999999987543211100 00000000000 001 11
Q ss_pred HHHH-HHHHhcC-------------cc----------cCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHH
Q 003878 677 EEEF-YWLIKYS-------------PL----------HNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATM 732 (789)
Q Consensus 677 ~~~~-~~l~~~s-------------P~----------~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L 732 (789)
.+.. ..+.... .+ ..+.+ ...|+|+++|++|..||+..+.++.+.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------i~~PvLii~G~~D~~v~~~~~~~l~~~~ 295 (330)
T 3p2m_A 226 VKSLRRGVFHNSRRLDNGNWVWRYDAIRTFGDFAGLWDDVDA----------LSAPITLVRGGSSGFVTDQDTAELHRRA 295 (330)
T ss_dssp HHHHHHHHHTTEEECSSSCEEESSCCCSBCCCHHHHHHHHHH----------CCSCEEEEEETTCCSSCHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccccCCCceEEeechhhCccccHHHHHHHhh----------CCCCEEEEEeCCCCCCCHHHHHHHHHhC
Confidence 1111 1111100 00 01111 2579999999999999998887776655
Q ss_pred HHhhccCCCCCCCCCcEE-EEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 733 QYVLCTSLENSPQTNPII-GRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~-l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
.. .+ +.+++++||....... .+..+.+.+||.
T Consensus 296 ~~--------------~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~ 328 (330)
T 3p2m_A 296 TH--------------FRGVHIVEKSGHSVQSDQP--RALIEIVRGVLD 328 (330)
T ss_dssp SS--------------EEEEEEETTCCSCHHHHCH--HHHHHHHHHHTT
T ss_pred CC--------------CeeEEEeCCCCCCcchhCH--HHHHHHHHHHHh
Confidence 32 35 8999999998643222 345556777764
|
| >2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=137.23 Aligned_cols=120 Identities=11% Similarity=0.011 Sum_probs=84.3
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCC
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 595 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~ 595 (789)
.+| .+|.+... ++.|+||++||..+.... |.. ....|. .+|.|+++|+||.|.....- .....
T Consensus 15 ~~g-~~l~~~~~--------g~~~~vv~lHG~~~~~~~--~~~-~~~~l~-~~~~vi~~D~~G~G~S~~~~----~~~~~ 77 (297)
T 2qvb_A 15 IAG-KRMAYIDE--------GKGDAIVFQHGNPTSSYL--WRN-IMPHLE-GLGRLVACDLIGMGASDKLS----PSGPD 77 (297)
T ss_dssp ETT-EEEEEEEE--------SSSSEEEEECCTTCCGGG--GTT-TGGGGT-TSSEEEEECCTTSTTSCCCS----SCSTT
T ss_pred ECC-EEEEEEec--------CCCCeEEEECCCCchHHH--HHH-HHHHHh-hcCeEEEEcCCCCCCCCCCC----Ccccc
Confidence 478 88876543 234899999998765443 332 234555 56999999999987643210 00111
Q ss_pred cchHHHHHHHHHHHHHcCCCCC-CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccc
Q 003878 596 QNCFDDFISASEYLISAGYTQS-RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 654 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~-~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d 654 (789)
..+++++.+.+..+++. .+. +++.++|+|+||.+++.++.++|++++++|+..|...
T Consensus 78 ~~~~~~~~~~~~~~l~~--~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~ 135 (297)
T 2qvb_A 78 RYSYGEQRDFLFALWDA--LDLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVT 135 (297)
T ss_dssp SSCHHHHHHHHHHHHHH--TTCCSCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECCS
T ss_pred CcCHHHHHHHHHHHHHH--cCCCCceEEEEeCchHHHHHHHHHhChHhhheeeEeccccC
Confidence 24566666666666654 234 6899999999999999999999999999999888664
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=140.66 Aligned_cols=225 Identities=12% Similarity=0.043 Sum_probs=143.6
Q ss_pred cEEEEEEecC-CCceEEEEEEEecCCCCC-CCCccEEEEEcCCCCccCCCCCCHHHHHHHHc------CCeEEEEEeecC
Q 003878 507 HVHQVFVPSK-DGSTKIPMFIVSKKNIKL-DGSHPCLLYGYGGFNISVTPSFSVSRTILMRH------LGAVFCIANIRG 578 (789)
Q Consensus 507 ~~~~~~~~s~-dg~~~i~~~l~~p~~~~~-~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~------~G~~v~~~~~RG 578 (789)
..+.+.+.|. -| .+..++++.|++..+ .+++|+|++.||..... . .......+.. .+++|+.++..
T Consensus 11 ~v~~~~~~S~~l~-~~r~~~VylP~~y~~~~~~yPVlylldG~~~f~---~-~~~~~~~l~~~~~~~~~~~IvV~i~~~- 84 (331)
T 3gff_A 11 EYQSKRLESRLLK-ETREYVIALPEGYAQSLEAYPVVYLLDGEDQFD---H-MASLLQFLSQGTMPQIPKVIIVGIHNT- 84 (331)
T ss_dssp CEEEEEEEETTTT-EEEEEEEECCTTGGGSCCCEEEEEESSHHHHHH---H-HHHHHHHHTCSSSCSSCCCEEEEECCS-
T ss_pred eEEEEEEEecCCC-CeEEEEEEeCCCCCCCCCCccEEEEecChhhhH---H-HHHHHHHHHhhhhcCCCCEEEEEECCC-
Confidence 4466667775 57 899999999999765 67899999999952110 0 1122344442 25788887651
Q ss_pred CCCCChhHHh-------cc------cc-cCCcchHHHHH--HHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc
Q 003878 579 GGEYGEEWHK-------GG------AL-AKKQNCFDDFI--SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDL 642 (789)
Q Consensus 579 ~g~~g~~~~~-------~~------~~-~~~~~~~~D~~--~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~ 642 (789)
....++.- .| .. ..+...|.+++ ..+.++.++.-++++| +|+|+|+||++++.++.++|++
T Consensus 85 --~R~~dytp~~~~~~~~G~~~~~~~~~~g~~~~~~~~l~~el~p~i~~~~~~~~~r-~i~G~S~GG~~al~~~~~~p~~ 161 (331)
T 3gff_A 85 --NRMRDYTPTHTLVLPSGNKGNPQYQHTGGAGRFLDFIEKELAPSIESQLRTNGIN-VLVGHSFGGLVAMEALRTDRPL 161 (331)
T ss_dssp --SHHHHSCSSCCSBCTTSSBCCGGGGGCCCHHHHHHHHHHTHHHHHHHHSCEEEEE-EEEEETHHHHHHHHHHHTTCSS
T ss_pred --CcccccCCCccccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHCCCCCCe-EEEEECHHHHHHHHHHHhCchh
Confidence 11111100 00 00 12233455655 3556666665566655 8999999999999999999999
Q ss_pred eeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCC----
Q 003878 643 FGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDD---- 718 (789)
Q Consensus 643 f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~---- 718 (789)
|+++++.+|.+.+ .++ ...+.+... +..... ...|+++.+|+.|.
T Consensus 162 F~~~~~~S~~~w~----------------~~~---~~~~~~~~~--~~~~~~----------~~~~l~l~~G~~d~~~~~ 210 (331)
T 3gff_A 162 FSAYLALDTSLWF----------------DSP---HYLTLLEER--VVKGDF----------KQKQLFMAIANNPLSPGF 210 (331)
T ss_dssp CSEEEEESCCTTT----------------TTT---HHHHHHHHH--HHHCCC----------SSEEEEEEECCCSEETTT
T ss_pred hheeeEeCchhcC----------------ChH---HHHHHHHHH--hhcccC----------CCCeEEEEeCCCCCCCcc
Confidence 9999999996431 111 011111110 000111 14699999999998
Q ss_pred ---CCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 719 ---RVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 719 ---~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
+++..++.+++++|+.. ...|..+.+.++++++|+... ...+.+.+.||....
T Consensus 211 ~~~~~~~~~~~~l~~~Lk~~-------~~~g~~~~~~~~pg~~H~sv~-----~~~~~~~l~~lf~~~ 266 (331)
T 3gff_A 211 GVSSYHKDLNLAFADKLTKL-------APKGLGFMAKYYPEETHQSVS-----HIGLYDGIRHLFKDF 266 (331)
T ss_dssp EECCHHHHHHHHHHHHHHHH-------CCTTEEEEEEECTTCCTTTHH-----HHHHHHHHHHHHGGG
T ss_pred chHHHHHHHHHHHHHHHHhc-------cCCCceEEEEECCCCCccccH-----HHHHHHHHHHHHhhc
Confidence 68888899999999986 333678999999999998643 233456666766544
|
| >3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-12 Score=139.24 Aligned_cols=126 Identities=13% Similarity=0.055 Sum_probs=80.1
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCc
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQ 596 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~ 596 (789)
+| .++.+...-+.+. +.+.+.||++||+++.... |......+..+.||.|+++|.||.|.....- ......
T Consensus 36 ~g-~~l~y~~~G~~~~--~~~g~plvllHG~~~~~~~--w~~~~~~l~~~~~~~Via~D~rG~G~S~~~~----~~~~~~ 106 (330)
T 3nwo_A 36 GD-HETWVQVTTPENA--QPHALPLIVLHGGPGMAHN--YVANIAALADETGRTVIHYDQVGCGNSTHLP----DAPADF 106 (330)
T ss_dssp TT-EEEEEEEECCSSC--CTTCCCEEEECCTTTCCSG--GGGGGGGHHHHHTCCEEEECCTTSTTSCCCT----TSCGGG
T ss_pred cC-cEEEEEEecCccC--CCCCCcEEEECCCCCCchh--HHHHHHHhccccCcEEEEECCCCCCCCCCCC----CCcccc
Confidence 78 8888877665321 1112357888998776543 3333334443369999999999988643200 000111
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 597 NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 597 ~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
.+++++.+-+..+++. ...+++.++|+|+||.+++.++.++|+++.++|+..+..
T Consensus 107 ~~~~~~a~dl~~ll~~--lg~~~~~lvGhSmGG~va~~~A~~~P~~v~~lvl~~~~~ 161 (330)
T 3nwo_A 107 WTPQLFVDEFHAVCTA--LGIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPA 161 (330)
T ss_dssp CCHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHTCCTTEEEEEEESCCS
T ss_pred ccHHHHHHHHHHHHHH--cCCCceEEEecCHHHHHHHHHHHhCCccceEEEEecCCc
Confidence 2344444444444333 123589999999999999999999999999998876543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-11 Score=150.50 Aligned_cols=324 Identities=10% Similarity=0.052 Sum_probs=184.2
Q ss_pred CCCceEeCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEE
Q 003878 83 YDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKL 162 (789)
Q Consensus 83 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v 162 (789)
...|.+.++.++|.....+ ...||..+..++..+.|..... +..+.|||||++|||+. . .+|++
T Consensus 206 v~~~~~s~d~l~~~~~~dg--~~~l~~~~~~g~~~~~l~~~~~--------~~~~~~SpDG~~la~~~--~----~~i~~ 269 (1045)
T 1k32_A 206 VSSPVIVGHRIYFITDIDG--FGQIYSTDLDGKDLRKHTSFTD--------YYPRHLNTDGRRILFSK--G----GSIYI 269 (1045)
T ss_dssp CEEEEEETTEEEEEECTTS--SCEEEEEETTSCSCEECCCCCS--------SCEEEEEESSSCEEEEE--T----TEEEE
T ss_pred ccceEEeCCEEEEEEeccC--ceEEEEEeCCCCcceEecCCCC--------cceeeEcCCCCEEEEEe--C----CEEEE
Confidence 3445556777777765433 3458887654444444433221 23458999999999973 2 37999
Q ss_pred EEcCCCceecccccccccccccCccce---eeeeeccccc-cccccccccccceeeEEEeeeccccceeeeeeec-----
Q 003878 163 MRIEDQIVEADALSWVCFCFSHSFGYF---FHLTISLLNV-PTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVS----- 233 (789)
Q Consensus 163 ~dl~tg~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~----- 233 (789)
||++++... .+.... ....-++ ..-..+..+. |+++ .++|.+ .+...+|....
T Consensus 270 ~d~~~~~l~--~l~~~~---~~~~~~~~~~~~~v~~~~~S~pdG~-----------~la~~~--~~~i~~~~~~~~~~~~ 331 (1045)
T 1k32_A 270 FNPDTEKIE--KIEIGD---LESPEDRIISIPSKFAEDFSPLDGD-----------LIAFVS--RGQAFIQDVSGTYVLK 331 (1045)
T ss_dssp ECTTTCCEE--ECCCCC---CCBCCSEEEECGGGGEEEEEECGGG-----------CEEEEE--TTEEEEECTTSSBEEE
T ss_pred ecCCceEee--eeccCc---ccccccccccccccceeeecCCCCC-----------EEEEEE--cCEEEEEcCCCCceEE
Confidence 999655433 121100 0000000 0001234456 7886 344444 22212221111
Q ss_pred ----cc-ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEE-EEECCCCCCCcEEEEecCCCCeeEEEEEE
Q 003878 234 ----QF-KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFY-YHFLGTKQSEDILCWKDPEHPKYIFSGHV 307 (789)
Q Consensus 234 ----~~-~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 307 (789)
.- ....++|+ ||+.|+|... ...++ ++++.+.... .+. .+...+..++|
T Consensus 332 ~~~~~~~~~~~~~~s-dg~~l~~~s~-------------------~~~l~~~~d~~~~~~~--~l~---~~~~~~~~~~~ 386 (1045)
T 1k32_A 332 VPEPLRIRYVRRGGD-TKVAFIHGTR-------------------EGDFLGIYDYRTGKAE--KFE---ENLGNVFAMGV 386 (1045)
T ss_dssp CSCCSCEEEEEECSS-SEEEEEEEET-------------------TEEEEEEEETTTCCEE--ECC---CCCCSEEEEEE
T ss_pred ccCCCcceEEeeeEc-CCCeEEEEEC-------------------CCceEEEEECCCCCce--Eec---CCccceeeeEE
Confidence 11 34578999 9999998743 23688 8888764322 222 22234568999
Q ss_pred ecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-cccc-eeEEEecCCCEEEEEECCC-----
Q 003878 308 TEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDA-QYEVIANDDTVFTFLTNKD----- 380 (789)
Q Consensus 308 SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~-~~~~~s~dG~~l~~~tn~~----- 380 (789)
||||++|++... ...|+++|++++. ...+.. .... ....|||||++|++.+...
T Consensus 387 SpDG~~la~~~~-----~~~v~~~d~~tg~--------------~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~ 447 (1045)
T 1k32_A 387 DRNGKFAVVAND-----RFEIMTVDLETGK--------------PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETD 447 (1045)
T ss_dssp CTTSSEEEEEET-----TSEEEEEETTTCC--------------EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTC
T ss_pred CCCCCEEEEECC-----CCeEEEEECCCCc--------------eEEeccCCCCCccceEECCCCCeEEEEecCcccccc
Confidence 999999997753 2479999998753 222331 1111 2345999999998876542
Q ss_pred -CCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCE-EEEEEEeCCe---------------EEEEEEECCC----
Q 003878 381 -APKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ-MIVSYLSDVK---------------YVLQIRDLKN---- 439 (789)
Q Consensus 381 -~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~-lv~~~~~~g~---------------~~L~~~dl~t---- 439 (789)
.....|+++|+++++ ...+..+. .....+.|++++. +++....++. ..++.+-+..
T Consensus 448 ~~~~~~i~l~d~~~g~-~~~l~~~~--~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (1045)
T 1k32_A 448 GYVMQAIHVYDMEGRK-IFAATTEN--SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPN 524 (1045)
T ss_dssp SCCEEEEEEEETTTTE-EEECSCSS--SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCC
T ss_pred CCCCCeEEEEECCCCc-EEEeeCCC--cccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCC
Confidence 234689999998876 55665554 3455688888655 5444332211 1223322210
Q ss_pred -------------------Cce--eeecccCCeeEEEeecccCCcEEEE---------EEcCCCCCcEEEEEECCCCC
Q 003878 440 -------------------GSL--LHQLPIEIGSVNAISARREDSVVFI---------SFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 440 -------------------G~~--~~~l~~~~~~v~~~s~s~d~~~l~~---------~~ss~~~P~~ly~~dl~tg~ 487 (789)
|.. +..++.+.+.+..+++++|+..++. .+++...+..+++||+.+++
T Consensus 525 ~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~ 602 (1045)
T 1k32_A 525 PTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK 602 (1045)
T ss_dssp GGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC
T ss_pred ccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCc
Confidence 111 1122323466777888998865443 33567789999999999985
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.1e-11 Score=123.72 Aligned_cols=208 Identities=9% Similarity=0.015 Sum_probs=139.3
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCC-CCCCcEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT-KQSEDILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~-~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
...++|||||+.|++... ..|+++++.+ ... ..+..... ...+..+.|||||++|+
T Consensus 44 v~~~~~spdg~~l~~~~~--------------------~~i~~~d~~~~~~~--~~~~~~~~-~~~~~~~~~spdg~~l~ 100 (297)
T 2ojh_A 44 FEAPNWSPDGKYLLLNSE--------------------GLLYRLSLAGDPSP--EKVDTGFA-TICNNDHGISPDGALYA 100 (297)
T ss_dssp CEEEEECTTSSEEEEEET--------------------TEEEEEESSSCCSC--EECCCTTC-CCBCSCCEECTTSSEEE
T ss_pred eEeeEECCCCCEEEEEcC--------------------CeEEEEeCCCCCCc--eEeccccc-cccccceEECCCCCEEE
Confidence 478999999999998631 2589999876 432 23332221 12334689999999999
Q ss_pred EEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
+...... ....||.+++.++. ...+..........|+|||+.|++....+ ...+|+.+++.++.
T Consensus 101 ~~~~~~~-~~~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~~~l~~~~~~~~~ 164 (297)
T 2ojh_A 101 ISDKVEF-GKSAIYLLPSTGGT--------------PRLMTKNLPSYWHGWSPDGKSFTYCGIRD-QVFDIYSMDIDSGV 164 (297)
T ss_dssp EEECTTT-SSCEEEEEETTCCC--------------CEECCSSSSEEEEEECTTSSEEEEEEEET-TEEEEEEEETTTCC
T ss_pred EEEeCCC-CcceEEEEECCCCc--------------eEEeecCCCccceEECCCCCEEEEEECCC-CceEEEEEECCCCc
Confidence 8774322 35789999987642 12222222223346999999998776554 34689998887765
Q ss_pred CeEEeccCCCCceeeeEEEecCCE-EEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCC-
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFL- 473 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~- 473 (789)
...+..+. ..+..+.|++++. +++....++..+|+.+++.+++. ..+......+..+.++++++.+++......
T Consensus 165 -~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 240 (297)
T 2ojh_A 165 -ETRLTHGE--GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV-ERITDSAYGDWFPHPSPSGDKVVFVSYDADV 240 (297)
T ss_dssp -EEECCCSS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCE-EECCCCSEEEEEEEECTTSSEEEEEEEETTC
T ss_pred -ceEcccCC--CccccceECCCCCEEEEEecCCCCccEEEECCCCCCc-EEEecCCcccCCeEECCCCCEEEEEEcCCCC
Confidence 44554433 4567889988654 55555457777888888774443 566655566777889999998887654322
Q ss_pred ------CCcEEEEEECCCCC
Q 003878 474 ------IPGIVYQCNLKTET 487 (789)
Q Consensus 474 ------~P~~ly~~dl~tg~ 487 (789)
....++.+|+.+++
T Consensus 241 ~~~~~~~~~~l~~~d~~~~~ 260 (297)
T 2ojh_A 241 FDHPRDLDVRVQLMDMDGGN 260 (297)
T ss_dssp CSCCSSEEEEEEEEETTSCS
T ss_pred CcccccCceEEEEEecCCCC
Confidence 23679999998885
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.9e-11 Score=127.64 Aligned_cols=235 Identities=11% Similarity=0.026 Sum_probs=145.9
Q ss_pred EEEeEEeCCCCcEEEEEEecC----CceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccc
Q 003878 133 ALIKVSVSEDAKYLAYALSYS----GSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYL 208 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~----g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (789)
.+..+++ ||++|||+.... ++...+|+++|+++++... +..
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--l~~------------------------------- 60 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--IEN------------------------------- 60 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--EES-------------------------------
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--ccc-------------------------------
Confidence 4677788 999999987542 3447899999999986542 211
Q ss_pred ccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC
Q 003878 209 RGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE 288 (789)
Q Consensus 209 ~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~ 288 (789)
...++|||||+.|+|..... .....+||++++.++.
T Consensus 61 ----------------------------~~~~~~SpDg~~la~~~~~~--------------~~~~~~l~~~~~~~g~-- 96 (347)
T 2gop_A 61 ----------------------------ATMPRISPDGKKIAFMRANE--------------EKKVSEIWVADLETLS-- 96 (347)
T ss_dssp ----------------------------CEEEEECTTSSEEEEEEEET--------------TTTEEEEEEEETTTTE--
T ss_pred ----------------------------CCCeEECCCCCEEEEEEecc--------------CCCcceEEEEECCCCc--
Confidence 37899999999999986542 1123469999887643
Q ss_pred cEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCC----------------------CCceEEEEEECCCCCCCccccccc
Q 003878 289 DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENC----------------------DPVNKVYYCDLSALPEGLEGFKKR 346 (789)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~----------------------~~~~~i~~~d~~~g~~~~~~~~~~ 346 (789)
...+...+ . +..+.|||||++|++...+.. .....||++++.++.
T Consensus 97 ~~~l~~~~---~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~--------- 163 (347)
T 2gop_A 97 SKKILEAK---N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE--------- 163 (347)
T ss_dssp EEEEEEES---E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE---------
T ss_pred eEEEEcCC---C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe---------
Confidence 23344332 2 567899999999999875310 114679999998752
Q ss_pred CCCCccEeeeccccceeEEEecCCCEEEEEECCCC-----C-CceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-CE
Q 003878 347 DGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDA-----P-KYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQ 419 (789)
Q Consensus 347 ~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~-----~-~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~ 419 (789)
....+... ......|+||| +++.++.+. . ..+|+.++ +++ .+.+..+ ..+..+ +++ +.
T Consensus 164 ----~~~~l~~~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~~---~~~~~~--spdg~~ 228 (347)
T 2gop_A 164 ----VIEEFEKP-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGK-EEKMFEK---VSFYAV--DSDGER 228 (347)
T ss_dssp ----EEEEEEEE-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTE-EEEEEEE---ESEEEE--EECSSC
T ss_pred ----EEeeecCC-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCc-eEEeccC---cceeeE--CCCCCE
Confidence 11222222 23345699999 666655432 1 56899999 444 5566544 223333 554 44
Q ss_pred EEEEEEeC-----CeEEEEEEECCCCceeeecccC-CeeEEE-eecccCCcEEEEEEcCCCCCcEEEEEE
Q 003878 420 MIVSYLSD-----VKYVLQIRDLKNGSLLHQLPIE-IGSVNA-ISARREDSVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 420 lv~~~~~~-----g~~~L~~~dl~tG~~~~~l~~~-~~~v~~-~s~s~d~~~l~~~~ss~~~P~~ly~~d 482 (789)
+++..... ...+|+++| +|+. +.+... ...+.. +.++ |+ ++++.+. ..-..+| ++
T Consensus 229 l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg--~~~~~~~-~~~~~l~-~~ 290 (347)
T 2gop_A 229 ILLYGKPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK--VYFTLFE-EGSVNLY-IW 290 (347)
T ss_dssp EEEEECCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE--EEEEEEE-TTEEEEE-EE
T ss_pred EEEEEccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc--EEEEEec-CCcEEEE-Ec
Confidence 55555433 135899999 4665 445433 456654 7777 66 5554332 2234666 66
|
| >3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=136.72 Aligned_cols=120 Identities=11% Similarity=-0.021 Sum_probs=85.7
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccC
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 594 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~ 594 (789)
..+| .+|.+... ++.|.||++||..+.... |.. ....|. +||.|+++|.||.|.....-. ....
T Consensus 19 ~~~g-~~l~~~~~--------g~~~~vv~lHG~~~~~~~--~~~-~~~~l~-~~~~v~~~D~~G~G~S~~~~~---~~~~ 82 (306)
T 3r40_A 19 NTSS-GRIFARVG--------GDGPPLLLLHGFPQTHVM--WHR-VAPKLA-ERFKVIVADLPGYGWSDMPES---DEQH 82 (306)
T ss_dssp CCTT-CCEEEEEE--------ECSSEEEEECCTTCCGGG--GGG-THHHHH-TTSEEEEECCTTSTTSCCCCC---CTTC
T ss_pred EeCC-EEEEEEEc--------CCCCeEEEECCCCCCHHH--HHH-HHHHhc-cCCeEEEeCCCCCCCCCCCCC---Cccc
Confidence 4478 78876543 244799999998765433 443 346677 599999999999875432110 0000
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 595 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 595 ~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
...+++++.+.+..+++. ...+++.++|||+||.+++.++.++|++++++|+..|.
T Consensus 83 ~~~~~~~~~~~~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 138 (306)
T 3r40_A 83 TPYTKRAMAKQLIEAMEQ--LGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDIL 138 (306)
T ss_dssp GGGSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred CCCCHHHHHHHHHHHHHH--hCCCCEEEEEecchHHHHHHHHHhChhhccEEEEecCC
Confidence 134567777776666665 34468999999999999999999999999999998864
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.5e-11 Score=143.35 Aligned_cols=264 Identities=11% Similarity=0.063 Sum_probs=164.0
Q ss_pred eCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEe
Q 003878 139 VSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLF 218 (789)
Q Consensus 139 ~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 218 (789)
++|||++++|.....|.....||+++..+++.... +... .+
T Consensus 79 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l-ld~~-----------------~l--------------------- 119 (710)
T 2xdw_A 79 HFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVF-LDPN-----------------IL--------------------- 119 (710)
T ss_dssp CEEETTEEEEEEECSSCSSCEEEEESSTTSCCEEE-ECGG-----------------GG---------------------
T ss_pred CEEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEE-ECHH-----------------Hh---------------------
Confidence 35999999999988887777999999877643210 0000 00
Q ss_pred eeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCC
Q 003878 219 SLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEH 298 (789)
Q Consensus 219 ~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~ 298 (789)
.+++.. ...+++|||||+.|+|+.... .....+|+++++.++......+ ....
T Consensus 120 --~~~~~~---------~~~~~~~SPDg~~la~~~~~~--------------G~~~~~i~v~d~~tg~~~~~~~-~~~~- 172 (710)
T 2xdw_A 120 --SDDGTV---------ALRGYAFSEDGEYFAYGLSAS--------------GSDWVTIKFMKVDGAKELPDVL-ERVK- 172 (710)
T ss_dssp --CTTSCE---------EEEEEEECTTSSEEEEEEEET--------------TCSCEEEEEEETTTTEEEEEEE-EEEC-
T ss_pred --ccCCCE---------EEEEEEECCCCCEEEEEEcCC--------------CCceEEEEEEECCCCCCCcccc-cCcc-
Confidence 000000 136899999999999997643 2233579999998764332222 1111
Q ss_pred CeeEEEEEEecCCcEEEEEEEcCC-----------CCceEEEEEECCCCCCCcccccccCCCCccEeeeccc--c--cee
Q 003878 299 PKYIFSGHVTEDGQYLVMCIEENC-----------DPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF--D--AQY 363 (789)
Q Consensus 299 ~~~~~~~~~SpDG~~l~~~~~~~~-----------~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~--~--~~~ 363 (789)
+.+++|||||+.|++.+.+.. .....||++++.++... ...+.... . ...
T Consensus 173 ---~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~------------~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 173 ---FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSE------------DILCAEFPDEPKWMGG 237 (710)
T ss_dssp ---SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGG------------CEEEECCTTCTTCEEE
T ss_pred ---cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCccc------------ceEEeccCCCCeEEEE
Confidence 235899999999999886543 12457999999874210 01121211 1 113
Q ss_pred EEEecCCCEEEEEECCCCC-CceEEEEECCC------CC-CeEEeccCCCCceeeeEEEecCCEEEEEEEeCC-eEEEEE
Q 003878 364 EVIANDDTVFTFLTNKDAP-KYKIIRVDLKE------PN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSDV-KYVLQI 434 (789)
Q Consensus 364 ~~~s~dG~~l~~~tn~~~~-~~~L~~~dl~~------~~-~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g-~~~L~~ 434 (789)
..|||||++|++.+++... ...|+.+|+++ +. .++.+..+.. .....++.. ++.+++....++ ..+|++
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~d-g~~l~~~s~~~~~~~~l~~ 315 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFE-GEYDYVTNE-GTVFTFKTNRHSPNYRLIN 315 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSS-SCEEEEEEE-TTEEEEEECTTCTTCEEEE
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCC-cEEEEEecc-CCEEEEEECCCCCCCEEEE
Confidence 4599999999998875433 67999999986 42 3677766553 222333332 367877766554 458999
Q ss_pred EECCCCce--eeecccC-C-eeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 435 RDLKNGSL--LHQLPIE-I-GSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 435 ~dl~tG~~--~~~l~~~-~-~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+++++++. .+.|..+ . ..+..+.++ +++.++++... ..-..++++++.+|+
T Consensus 316 ~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~lv~~~~~-~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 316 IDFTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLH-DVKNTLQLHDLATGA 370 (710)
T ss_dssp EETTSCCGGGCEEEECCCSSCEEEEEEEE-TTTEEEEEEEE-TTEEEEEEEETTTCC
T ss_pred EeCCCCCcccceeccCCCCCCeEEEEEEE-cCCEEEEEEEE-CCEEEEEEEECCCCC
Confidence 99987642 2344433 2 356667776 35556666543 334578999987774
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.1e-11 Score=142.25 Aligned_cols=258 Identities=10% Similarity=0.047 Sum_probs=156.8
Q ss_pred EeCCE-EEEEEEcCCCCeeEEEEecCC--C-CCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecC-----CceEE
Q 003878 88 KRGNK-YFYFHNTGLQPQSVLYVQDSL--D-AKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYS-----GSDWA 158 (789)
Q Consensus 88 ~~g~~-~~~~~~~~~~~~~~~~~~~~~--~-~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~-----g~~~~ 158 (789)
++|++ ++|.... ...||+.+.. + ++.+.|..... ..+...+..++|||||++|+|+.... +....
T Consensus 88 PDg~~~la~~~~~----~~~l~~~~~~~~g~~~~~~l~~~~~--~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 88 PAGGPLLVFTHFG----DQRLYAFEPDAPGGAVPRPLTPVSA--VGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp SSSSCEEEEEBTT----TCCEEEECTTSTTCCCCEECSCCCC--STTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEE
T ss_pred cCCCeEEEEEECC----CCeEEEEcCCCCCCCCCEeccCCcc--CCCCccccCcEECCCCCEEEEEEecccCCCCCCcee
Confidence 56888 8876543 2348888754 2 55555443210 00235678899999999999987541 13457
Q ss_pred EEEEEEcCC------Cceeccccc-ccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeee
Q 003878 159 TIKLMRIED------QIVEADALS-WVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSV 231 (789)
Q Consensus 159 ~i~v~dl~t------g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~ 231 (789)
+|+++|+.+ ++... +. ... .
T Consensus 162 ~i~~~~~~~~~~~~~~~~~~--l~~~~~---------------------~------------------------------ 188 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSAVRE--LSDDAH---------------------R------------------------------ 188 (662)
T ss_dssp EEEEEETTSTTTTCGGGSEE--SSCSCS---------------------S------------------------------
T ss_pred EEEEEECCCCccccCCceeE--EEecCC---------------------C------------------------------
Confidence 999999998 54332 22 110 0
Q ss_pred ecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECC-CCC-CCcEEEEecCCCCeeEEEEEEec
Q 003878 232 VSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLG-TKQ-SEDILCWKDPEHPKYIFSGHVTE 309 (789)
Q Consensus 232 ~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg-~~~-~~~~~~~~~~~~~~~~~~~~~Sp 309 (789)
...+++|||||+.|+|...+.+.. .....+|+++++. ++. .+...+.... ......+.|||
T Consensus 189 ----~~~~~~~SpDG~~la~~~~~~~~~-----------~~~~~~i~~~d~~~~g~~~~~~~l~~~~--~~~~~~~~~sp 251 (662)
T 3azo_A 189 ----FVTGPRLSPDGRQAVWLAWDHPRM-----------PWEGTELKTARVTEDGRFADTRTLLGGP--EEAIAQAEWAP 251 (662)
T ss_dssp ----EECCCEECTTSSEEEEEEECTTCC-----------TTTCEEEEEEEECTTSCEEEEEEEEEET--TBCEEEEEECT
T ss_pred ----cccCceECCCCCEEEEEECCCCCC-----------CCCCcEEEEEEECCCCcccccEEeCCCC--CceEcceEECC
Confidence 146799999999999987543110 1234579999997 331 1223333332 22355789999
Q ss_pred CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc-cc---------ceeEEEecCCCEEEEEECC
Q 003878 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FD---------AQYEVIANDDTVFTFLTNK 379 (789)
Q Consensus 310 DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~-~~---------~~~~~~s~dG~~l~~~tn~ 379 (789)
||+ +++.+.... ...||+++++++. +..++.. .. .....++++|+ +++..+.
T Consensus 252 dg~-l~~~~~~~~--~~~l~~~~~~~~~--------------~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~ 313 (662)
T 3azo_A 252 DGS-LIVATDRTG--WWNLHRVDPATGA--------------ATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK 313 (662)
T ss_dssp TSC-EEEEECTTS--SCEEEEECTTTCC--------------EEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS
T ss_pred CCe-EEEEECCCC--CeEEEEEECCCCc--------------eeecccccccccCccccccCceEeEeCCCE-EEEEEEc
Confidence 999 666664432 4579999986642 1122111 00 11233567766 4555554
Q ss_pred CCCCceEEEEECCCCCCeEEeccCCCCceeeeE-EEecCCEEEEEEEe-CCeEEEEEEECCCCceeeec
Q 003878 380 DAPKYKIIRVDLKEPNDWFEVIPEAERDVLESA-TAVNLNQMIVSYLS-DVKYVLQIRDLKNGSLLHQL 446 (789)
Q Consensus 380 ~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v-~~~~~~~lv~~~~~-~g~~~L~~~dl~tG~~~~~l 446 (789)
...+|+.+|+++++ .+.+..+. ..+..+ ++.+ +.+++.... +....|+++++++|+. +.+
T Consensus 314 --~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~~s~~~-~~~~~~~~~~~~~~~i~~~d~~~g~~-~~l 375 (662)
T 3azo_A 314 --GAAVLGILDPESGE-LVDAAGPW--TEWAATLTVSG-TRAVGVAASPRTAYEVVELDTVTGRA-RTI 375 (662)
T ss_dssp --SSCEEEEEETTTTE-EEECCSSC--CEEEEEEEEET-TEEEEEEEETTEEEEEEEEETTTCCE-EEE
T ss_pred --CccEEEEEECCCCc-EEEecCCC--CeEEEEEecCC-CEEEEEEcCCCCCCEEEEEECCCCce-EEe
Confidence 56899999998775 56664443 345566 6655 666665544 4456899999987765 444
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-11 Score=128.38 Aligned_cols=240 Identities=14% Similarity=0.064 Sum_probs=159.4
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+...+..+.++|+++.+|-+ +...+|++||+++++.+. .+... +.
T Consensus 79 h~~~v~~~~~~~~~~~l~s~-----s~D~~i~lWd~~~~~~~~-~~~~~---------------------~~-------- 123 (321)
T 3ow8_A 79 HQLGVVSVDISHTLPIAASS-----SLDAHIRLWDLENGKQIK-SIDAG---------------------PV-------- 123 (321)
T ss_dssp CSSCEEEEEECSSSSEEEEE-----ETTSEEEEEETTTTEEEE-EEECC---------------------TT--------
T ss_pred CCCCEEEEEECCCCCEEEEE-----eCCCcEEEEECCCCCEEE-EEeCC---------------------Cc--------
Confidence 44567889999999988733 334589999999986543 11111 00
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
....++|+|||+.|+.... ...+.++++.+...
T Consensus 124 --------------------------~~~~~~~spdg~~l~~g~~-------------------dg~v~i~~~~~~~~-- 156 (321)
T 3ow8_A 124 --------------------------DAWTLAFSPDSQYLATGTH-------------------VGKVNIFGVESGKK-- 156 (321)
T ss_dssp --------------------------CCCCEEECTTSSEEEEECT-------------------TSEEEEEETTTCSE--
T ss_pred --------------------------cEEEEEECCCCCEEEEEcC-------------------CCcEEEEEcCCCce--
Confidence 2467999999999986532 23588888876532
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEec
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIAN 368 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~ 368 (789)
...+.. +...+..++|+|||++|+....+ ..|.++|+.++. ....+..... .....|+|
T Consensus 157 ~~~~~~--~~~~v~~~~~spdg~~lasg~~d-----g~i~iwd~~~~~-------------~~~~~~~h~~~v~~l~~sp 216 (321)
T 3ow8_A 157 EYSLDT--RGKFILSIAYSPDGKYLASGAID-----GIINIFDIATGK-------------LLHTLEGHAMPIRSLTFSP 216 (321)
T ss_dssp EEEEEC--SSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTE-------------EEEEECCCSSCCCEEEECT
T ss_pred eEEecC--CCceEEEEEECCCCCEEEEEcCC-----CeEEEEECCCCc-------------EEEEEcccCCceeEEEEcC
Confidence 222332 23346789999999999876643 348899998742 1222221111 12235899
Q ss_pred CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc
Q 003878 369 DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI 448 (789)
Q Consensus 369 dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~ 448 (789)
+|+.|+..+ .+..|..+|+.+++....+..+. ..+..+++++++..+++...++ .|.+||+.+++.+..+..
T Consensus 217 d~~~l~s~s----~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~sp~~~~l~s~s~D~--~v~iwd~~~~~~~~~~~~ 288 (321)
T 3ow8_A 217 DSQLLVTAS----DDGYIKIYDVQHANLAGTLSGHA--SWVLNVAFCPDDTHFVSSSSDK--SVKVWDVGTRTCVHTFFD 288 (321)
T ss_dssp TSCEEEEEC----TTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTS--CEEEEETTTTEEEEEECC
T ss_pred CCCEEEEEc----CCCeEEEEECCCcceeEEEcCCC--CceEEEEECCCCCEEEEEeCCC--cEEEEeCCCCEEEEEEcC
Confidence 998776433 24578899998776333443343 4578899998777888888887 689999998887666665
Q ss_pred CCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEEC
Q 003878 449 EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 449 ~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl 483 (789)
....|..+.++++++.++- .+ .-+.+..||.
T Consensus 289 h~~~v~~v~~s~~g~~l~s-~~---~d~~i~vwd~ 319 (321)
T 3ow8_A 289 HQDQVWGVKYNGNGSKIVS-VG---DDQEIHIYDC 319 (321)
T ss_dssp CSSCEEEEEECTTSSEEEE-EE---TTCCEEEEEC
T ss_pred CCCcEEEEEECCCCCEEEE-Ee---CCCeEEEEeC
Confidence 6677888999999886653 22 2345666664
|
| >1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-12 Score=136.66 Aligned_cols=121 Identities=9% Similarity=0.002 Sum_probs=85.0
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccC
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 594 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~ 594 (789)
..+| .+|.+... ++.|+||++||..+.... |.. ....|. .+|.|+++|+||.|.....- ....
T Consensus 15 ~~~g-~~l~~~~~--------g~~~~vv~lHG~~~~~~~--~~~-~~~~L~-~~~~vi~~D~~G~G~S~~~~----~~~~ 77 (302)
T 1mj5_A 15 EIKG-RRMAYIDE--------GTGDPILFQHGNPTSSYL--WRN-IMPHCA-GLGRLIACDLIGMGDSDKLD----PSGP 77 (302)
T ss_dssp EETT-EEEEEEEE--------SCSSEEEEECCTTCCGGG--GTT-TGGGGT-TSSEEEEECCTTSTTSCCCS----SCST
T ss_pred EECC-EEEEEEEc--------CCCCEEEEECCCCCchhh--hHH-HHHHhc-cCCeEEEEcCCCCCCCCCCC----CCCc
Confidence 4478 88876543 224899999998765433 332 234455 55899999999987643210 0011
Q ss_pred CcchHHHHHHHHHHHHHcCCCCC-CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccc
Q 003878 595 KQNCFDDFISASEYLISAGYTQS-RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 654 (789)
Q Consensus 595 ~~~~~~D~~~~~~~L~~~~~~d~-~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d 654 (789)
...+++|+.+.+..+++. .+. +++.++|+|+||.+++.++.++|++++++|+..|...
T Consensus 78 ~~~~~~~~~~~~~~~l~~--l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 136 (302)
T 1mj5_A 78 ERYAYAEHRDYLDALWEA--LDLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAM 136 (302)
T ss_dssp TSSCHHHHHHHHHHHHHH--TTCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCS
T ss_pred ccccHHHHHHHHHHHHHH--hCCCceEEEEEECCccHHHHHHHHHCHHHHhheeeecccCC
Confidence 124677777777666665 234 7899999999999999999999999999999887653
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.7e-10 Score=123.78 Aligned_cols=249 Identities=8% Similarity=0.002 Sum_probs=157.8
Q ss_pred EEeEEeCCCCcEEEEEEecCC---ceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccc
Q 003878 134 LIKVSVSEDAKYLAYALSYSG---SDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g---~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
...+++||||++|+++.. .| ....+|+++|+++++.+.. +... .
T Consensus 43 ~~~~~~s~dg~~l~~~~~-~~~~~~~~~~v~~~d~~~~~~~~~-~~~~----------------------~--------- 89 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATS-QSRKLDKGGVVYRLDPVTLEVTQA-IHND----------------------L--------- 89 (353)
T ss_dssp EEEEEEETTTTEEEEEEC-CCTTTEESEEEEEECTTTCCEEEE-EEES----------------------S---------
T ss_pred ccceEECCCCCEEEEEcC-CCcCCCCCccEEEEcCCCCeEEEE-EecC----------------------C---------
Confidence 457889999999965543 32 1357899999999976532 1110 0
Q ss_pred ceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcE
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDI 290 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~ 290 (789)
....++|+|||+.++++... ...|+++++.+....
T Consensus 90 -------------------------~~~~~~~s~dg~~l~v~~~~------------------~~~v~~~d~~~~~~~-- 124 (353)
T 3vgz_A 90 -------------------------KPFGATINNTTQTLWFGNTV------------------NSAVTAIDAKTGEVK-- 124 (353)
T ss_dssp -------------------------CCCSEEEETTTTEEEEEETT------------------TTEEEEEETTTCCEE--
T ss_pred -------------------------CcceEEECCCCCEEEEEecC------------------CCEEEEEeCCCCeeE--
Confidence 23679999999998887432 236888888765432
Q ss_pred EEEecCCC-------CeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-ccccce
Q 003878 291 LCWKDPEH-------PKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-DGFDAQ 362 (789)
Q Consensus 291 ~~~~~~~~-------~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-~~~~~~ 362 (789)
..+..... +.....+.+||||+++++..... ...|+++|++++. ....+. .+....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~---~~~i~~~d~~~~~-------------~~~~~~~~~~~~~ 188 (353)
T 3vgz_A 125 GRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK---ESVIWVVDGGNIK-------------LKTAIQNTGKMST 188 (353)
T ss_dssp EEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS---SCEEEEEETTTTE-------------EEEEECCCCTTCC
T ss_pred EEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC---CceEEEEcCCCCc-------------eEEEecCCCCccc
Confidence 22222111 11245789999999988776432 3669999998742 111111 111122
Q ss_pred eEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEecc-C-CCCceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCC
Q 003878 363 YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP-E-AERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKN 439 (789)
Q Consensus 363 ~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~-~-~~~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~t 439 (789)
...|+|||+.+|+... +..|+.+|+.+++....+.. . .......++.+++++ .+++.... ...|++||+++
T Consensus 189 ~~~~s~dg~~l~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~v~~~d~~~ 262 (353)
T 3vgz_A 189 GLALDSEGKRLYTTNA----DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK--AAEVLVVDTRN 262 (353)
T ss_dssp CCEEETTTTEEEEECT----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS--SSEEEEEETTT
T ss_pred eEEECCCCCEEEEEcC----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC--CCEEEEEECCC
Confidence 3458999999887532 46899999988762222221 1 123345678888754 45554432 24899999998
Q ss_pred CceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 440 GSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 440 G~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
++....+..+.. ..+.++++++.++++.. ....++.+|..+++
T Consensus 263 ~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 263 GNILAKVAAPES--LAVLFNPARNEAYVTHR---QAGKVSVIDAKSYK 305 (353)
T ss_dssp CCEEEEEECSSC--CCEEEETTTTEEEEEET---TTTEEEEEETTTTE
T ss_pred CcEEEEEEcCCC--ceEEECCCCCEEEEEEC---CCCeEEEEECCCCe
Confidence 887666665432 24667899998877643 23689999998884
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.4e-11 Score=126.80 Aligned_cols=205 Identities=10% Similarity=0.030 Sum_probs=133.2
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...++|+||+ .|+.... ...|++|++.++.......+....+...+..++|||||++|+.
T Consensus 85 v~~~~~s~d~-~l~~~s~-------------------dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~s 144 (344)
T 4gqb_B 85 VADLTWVGER-GILVASD-------------------SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVS 144 (344)
T ss_dssp EEEEEEETTT-EEEEEET-------------------TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EEEEEEeCCC-eEEEEEC-------------------CCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEE
Confidence 4689999996 4554432 2358899998765443333222233445778999999999987
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
.+.+ ..|.++|+.++. ....+........ ..|++++..+++.... +..|..+|+.+++
T Consensus 145 gs~d-----~~i~iwd~~~~~-------------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~---D~~v~iwd~~~~~ 203 (344)
T 4gqb_B 145 GSKD-----ICIKVWDLAQQV-------------VLSSYRAHAAQVTCVAASPHKDSVFLSCSE---DNRILLWDTRCPK 203 (344)
T ss_dssp EETT-----SCEEEEETTTTE-------------EEEEECCCSSCEEEEEECSSCTTEEEEEET---TSCEEEEETTSSS
T ss_pred EeCC-----CeEEEEECCCCc-------------EEEEEcCcCCceEEEEecCCCCCceeeecc---ccccccccccccc
Confidence 6543 348889998742 1222222222222 3488888766554433 3578899998876
Q ss_pred CeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCC
Q 003878 396 DWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLI 474 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~ 474 (789)
....+........+..+.+++ ++.++++...++ .|++||+.+++.+..+..+...|..+.++|++..++++.+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg--~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~--- 278 (344)
T 4gqb_B 204 PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG--TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSE--- 278 (344)
T ss_dssp CEEECC----CCCEEEEEECSSCTTEEEEEETTS--EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEET---
T ss_pred eeeeeecceeeccceeeeecCCCCcceEEeccCC--cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeC---
Confidence 444444333344567888886 356888888887 78999999888767777667778889999998766655442
Q ss_pred CcEEEEEECCCCC
Q 003878 475 PGIVYQCNLKTET 487 (789)
Q Consensus 475 P~~ly~~dl~tg~ 487 (789)
-.+++.||+.+++
T Consensus 279 D~~i~vwd~~~~~ 291 (344)
T 4gqb_B 279 DCSLAVLDSSLSE 291 (344)
T ss_dssp TSCEEEECTTCCE
T ss_pred CCeEEEEECCCCc
Confidence 3578999998873
|
| >2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.8e-12 Score=133.08 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=76.3
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
+.|.||++||..+.... |.. ....|. .+|.|+++|.||.|..... .....+++++.+.+..+++. ..
T Consensus 15 ~g~~vvllHG~~~~~~~--~~~-~~~~L~-~~~~vi~~Dl~G~G~S~~~-------~~~~~~~~~~~~dl~~~l~~--l~ 81 (269)
T 2xmz_A 15 TNQVLVFLHGFLSDSRT--YHN-HIEKFT-DNYHVITIDLPGHGEDQSS-------MDETWNFDYITTLLDRILDK--YK 81 (269)
T ss_dssp CSEEEEEECCTTCCGGG--GTT-THHHHH-TTSEEEEECCTTSTTCCCC-------TTSCCCHHHHHHHHHHHHGG--GT
T ss_pred CCCeEEEEcCCCCcHHH--HHH-HHHHHh-hcCeEEEecCCCCCCCCCC-------CCCccCHHHHHHHHHHHHHH--cC
Confidence 34569999998776544 333 235566 5699999999998864321 01134677777777666665 23
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
.+++.++|||+||.+++.++.++|++++++|+..|..
T Consensus 82 ~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~ 118 (269)
T 2xmz_A 82 DKSITLFGYSMGGRVALYYAINGHIPISNLILESTSP 118 (269)
T ss_dssp TSEEEEEEETHHHHHHHHHHHHCSSCCSEEEEESCCS
T ss_pred CCcEEEEEECchHHHHHHHHHhCchheeeeEEEcCCc
Confidence 4689999999999999999999999999999887644
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.6e-12 Score=130.25 Aligned_cols=106 Identities=14% Similarity=0.194 Sum_probs=74.9
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
+..|.||++||..+... .|... ...|.++||.|+++|.||.|..... .....+++++.+.+..+++.-.
T Consensus 8 ~~g~~vvllHG~~~~~~--~w~~~-~~~L~~~g~~via~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~l~- 76 (264)
T 2wfl_A 8 KQQKHFVLVHGGCLGAW--IWYKL-KPLLESAGHKVTAVDLSAAGINPRR-------LDEIHTFRDYSEPLMEVMASIP- 76 (264)
T ss_dssp -CCCEEEEECCTTCCGG--GGTTH-HHHHHHTTCEEEEECCTTSTTCSCC-------GGGCCSHHHHHHHHHHHHHHSC-
T ss_pred CCCCeEEEECCCccccc--hHHHH-HHHHHhCCCEEEEeecCCCCCCCCC-------cccccCHHHHHHHHHHHHHHhC-
Confidence 45688999999865443 34443 4455448999999999998764321 1112456666666555555411
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
..+++.++|||+||.++..++.++|++++++|+..+.
T Consensus 77 ~~~~~~lvGhSmGG~va~~~a~~~p~~v~~lvl~~~~ 113 (264)
T 2wfl_A 77 PDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAM 113 (264)
T ss_dssp TTCCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSC
T ss_pred CCCCeEEEEeChHHHHHHHHHHhChhhhceeEEEeec
Confidence 1258999999999999999999999999999987653
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.2e-11 Score=141.47 Aligned_cols=277 Identities=12% Similarity=0.083 Sum_probs=162.9
Q ss_pred CEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCC---
Q 003878 91 NKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED--- 167 (789)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~t--- 167 (789)
+++.|..+ ..||+.+..+++...++.... .+..++|||||++|||+.+ .+|++||+.+
T Consensus 93 ~~~~~~~~------~~i~~~d~~~~~~~~l~~~~~-------~~~~~~~SpdG~~la~~~~------~~i~v~~~~~~~~ 153 (706)
T 2z3z_A 93 GLVVLFTQ------GGLVGFDMLARKVTYLFDTNE-------ETASLDFSPVGDRVAYVRN------HNLYIARGGKLGE 153 (706)
T ss_dssp TEEEEEET------TEEEEEETTTTEEEEEECCTT-------CCTTCEECTTSSEEEEEET------TEEEEEECBCTTS
T ss_pred CeEEEEEC------CEEEEEECCCCceEEccCCcc-------cccCCcCCCCCCEEEEEEC------CeEEEEecCcccc
Confidence 56666532 346666654454444443321 2456889999999999632 3799999998
Q ss_pred --CceecccccccccccccCccceeee---------eeccccccccccccccccceeeEEEeee-c--------------
Q 003878 168 --QIVEADALSWVCFCFSHSFGYFFHL---------TISLLNVPTYKLFLYLRGIFFFFYLFSL-V-------------- 221 (789)
Q Consensus 168 --g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~p~~~~~~~~~~~~~~~~~~~s-~-------------- 221 (789)
++......... ...+..+ ..+..+.|+++ +++|.+ |
T Consensus 154 ~~g~~~~~~~~~~-------~~~~~g~~~~~ee~~~~~~~~~SpDg~-----------~la~~~~d~~~~~~~~~~~~~~ 215 (706)
T 2z3z_A 154 GMSRAIAVTIDGT-------ETLVYGQAVHQREFGIEKGTFWSPKGS-----------CLAFYRMDQSMVKPTPIVDYHP 215 (706)
T ss_dssp CCCCCEESCSCCB-------TTEEESSCCGGGCTTCCCSEEECTTSS-----------EEEEEEEECTTSCCEEEEECCS
T ss_pred cCCCcEEeccCCC-------CCeEcccchhhhhcCCCceEEECCCCC-----------EEEEEEECCCCCceEEeeccCC
Confidence 76543211111 0000000 24567889997 344433 1
Q ss_pred ---------------cccceeeeeeec------c--------cccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCC
Q 003878 222 ---------------KSTIYSFWSVVS------Q--------FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN 272 (789)
Q Consensus 222 ---------------~~g~~~l~~~~~------~--------~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~ 272 (789)
..+..+||..+. . .....++|||||+.|++...+. ..
T Consensus 216 ~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~--------------~~ 281 (706)
T 2z3z_A 216 LEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNR--------------AQ 281 (706)
T ss_dssp SSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECT--------------TS
T ss_pred CCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCC--------------CC
Confidence 123345555444 1 1124789999999999976543 12
Q ss_pred cccEEEEEECCCCCCCcEEEEecCCCCee---EEEEEEec--CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccC
Q 003878 273 LYHEFYYHFLGTKQSEDILCWKDPEHPKY---IFSGHVTE--DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD 347 (789)
Q Consensus 273 ~~~~i~~~~lg~~~~~~~~~~~~~~~~~~---~~~~~~Sp--DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~ 347 (789)
....|+++++.++... ..+..... ..+ ...+.||| ||++|+.. ... ....||.++.+++.
T Consensus 282 ~~~~v~~~d~~~g~~~-~~~~~~~~-~~~~~~~~~~~~sp~~dg~~l~~~-~~~--g~~~l~~~~~~~~~---------- 346 (706)
T 2z3z_A 282 NECKVNAYDAETGRFV-RTLFVETD-KHYVEPLHPLTFLPGSNNQFIWQS-RRD--GWNHLYLYDTTGRL---------- 346 (706)
T ss_dssp CEEEEEEEETTTCCEE-EEEEEEEC-SSCCCCCSCCEECTTCSSEEEEEE-CTT--SSCEEEEEETTSCE----------
T ss_pred CeeEEEEEECCCCcee-eEEEEccC-CCeECccCCceeecCCCCEEEEEE-ccC--CccEEEEEECCCCE----------
Confidence 3357899998775222 22332211 111 13468999 99966533 322 25789999865421
Q ss_pred CCCccEeeecccccee--EEEecCCCEEEEEECCCC-CCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCC-EEEEE
Q 003878 348 GLLPFVKLIDGFDAQY--EVIANDDTVFTFLTNKDA-PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVS 423 (789)
Q Consensus 348 ~~~~~~~l~~~~~~~~--~~~s~dG~~l~~~tn~~~-~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~-~lv~~ 423 (789)
...+..+..... ..|+|||+.|++.++.+. ...+|+.+++++++ .+.+. +. ..+..+++++++ .+++.
T Consensus 347 ----~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~--~~~~~~~~spdg~~l~~~ 418 (706)
T 2z3z_A 347 ----IRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PE--SGMHRTQLSPDGSAIIDI 418 (706)
T ss_dssp ----EEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CS--SSEEEEEECTTSSEEEEE
T ss_pred ----EEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CC--CceEEEEECCCCCEEEEE
Confidence 223333222122 459999999999887643 24699999998876 45554 33 235678898864 45555
Q ss_pred EEeC-CeEEEEEEECCCCc
Q 003878 424 YLSD-VKYVLQIRDLKNGS 441 (789)
Q Consensus 424 ~~~~-g~~~L~~~dl~tG~ 441 (789)
.... ...+|++||+++++
T Consensus 419 ~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 419 FQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EECSSCSCEEEEEESSSCE
T ss_pred ecCCCCCcEEEEEECCCCe
Confidence 4443 34589999998765
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.6e-11 Score=126.11 Aligned_cols=284 Identities=10% Similarity=0.000 Sum_probs=179.1
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..+..+++||||++||.+.. ...|++||+.+++.+. .+... .+.. .+..+.|++
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~-----dg~i~vwd~~~~~~~~-~~~~h-------~~~v----~~~~~~~~~--------- 86 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSK-----DSSASVWYSLNGERLG-TLDGH-------TGTI----WSIDVDCFT--------- 86 (369)
T ss_dssp SCEEEEEECTTSCEEEEEES-----SSCEEEEETTTCCEEE-EECCC-------SSCE----EEEEECTTS---------
T ss_pred ceEEEEEEcCCCCEEEEEeC-----CCEEEEEeCCCchhhh-hhhhc-------CCcE----EEEEEcCCC---------
Confidence 45788999999999986542 3379999999986553 12111 1111 122233555
Q ss_pred eeeEEEeeeccccceeeeeeec---------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEEC
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVS---------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFL 282 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~---------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 282 (789)
.+++++..+|...+|.+.. ......++|+||++.|+....+. ......|.++++
T Consensus 87 ---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~--------------~~~~g~i~~~d~ 149 (369)
T 3zwl_B 87 ---KYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNV--------------MKNPGSINIYEI 149 (369)
T ss_dssp ---SEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCB--------------TTBCCEEEEEEE
T ss_pred ---CEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCc--------------cCCCCEEEEEEe
Confidence 3667788899999998654 22346789999999998875431 122345777776
Q ss_pred CCCCCCcEEE---------EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccE
Q 003878 283 GTKQSEDILC---------WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV 353 (789)
Q Consensus 283 g~~~~~~~~~---------~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~ 353 (789)
.+......+. .........+..+.|+|||++|+.... ...|+++|+.+.. ....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~------------~~~~ 212 (369)
T 3zwl_B 150 ERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK-----DGKISKYDVSNNY------------EYVD 212 (369)
T ss_dssp EECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET-----TSEEEEEETTTTT------------EEEE
T ss_pred cCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC-----CCEEEEEECCCCc------------EeEE
Confidence 5543221111 111111124668899999999987653 3568999998621 1122
Q ss_pred eeeccccc-eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCe---
Q 003878 354 KLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVK--- 429 (789)
Q Consensus 354 ~l~~~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~--- 429 (789)
.+...... ....|+|+|+.|+..+. +..|..+|+.+++ ....+.. ...+..+.+++++..++....++.
T Consensus 213 ~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~v~d~~~~~-~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~ 285 (369)
T 3zwl_B 213 SIDLHEKSISDMQFSPDLTYFITSSR----DTNSFLVDVSTLQ-VLKKYET--DCPLNTAVITPLKEFIILGGGQEAKDV 285 (369)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTCC-EEEEEEC--SSCEEEEEECSSSSEEEEEECCC----
T ss_pred EEecCCCceeEEEECCCCCEEEEecC----CceEEEEECCCCc-eeeeecC--CCCceeEEecCCCceEEEeecCCCceE
Confidence 22221111 22348999998876543 3579999998876 2333333 245778888886555555554431
Q ss_pred ---------EEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 430 ---------YVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 430 ---------~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
..+.+|++.+++....+..+...+..+.++++++.++... .-+.+..|++.++
T Consensus 286 ~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 286 TTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGG----EDGFIRLHHFEKS 347 (369)
T ss_dssp ---------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE----TTSEEEEEEECHH
T ss_pred EEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEc----CCCeEEEEECccc
Confidence 1689999988887666666667788899999998665432 2468888888664
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-11 Score=129.39 Aligned_cols=215 Identities=14% Similarity=0.119 Sum_probs=127.2
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
.|.||++||..+... .|... ...|.++||.|+.+|.||.|..... .....+++++.+.+..+++.-. ..
T Consensus 4 ~~~vvllHG~~~~~~--~w~~~-~~~L~~~g~rVia~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~l~-~~ 72 (273)
T 1xkl_A 4 GKHFVLVHGACHGGW--SWYKL-KPLLEAAGHKVTALDLAASGTDLRK-------IEELRTLYDYTLPLMELMESLS-AD 72 (273)
T ss_dssp CCEEEEECCTTCCGG--GGTTH-HHHHHHTTCEEEECCCTTSTTCCCC-------GGGCCSHHHHHHHHHHHHHTSC-SS
T ss_pred CCeEEEECCCCCCcc--hHHHH-HHHHHhCCCEEEEecCCCCCCCccC-------cccccCHHHHHHHHHHHHHHhc-cC
Confidence 378999999865443 34443 4556548999999999998764321 1112457777766666666521 13
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccc---------ccccccCCccchh----hcC------------
Q 003878 618 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML---------RYHKFTIGHAWVS----DFG------------ 672 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~---------~~~~~~~~~~~~~----e~g------------ 672 (789)
+++.++|||+||.++..++.++|++++++|+..+..... ..........|.. .++
T Consensus 73 ~~~~lvGhSmGG~va~~~a~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (273)
T 1xkl_A 73 EKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFG 152 (273)
T ss_dssp SCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEEECC
T ss_pred CCEEEEecCHHHHHHHHHHHhChHhheEEEEEeccCCCCCCcHHHHHHHhhccCChhhHHHHHHhhccCCCCCccccccC
Confidence 589999999999999999999999999999876542100 0000000000000 000
Q ss_pred ---------CCCcHHHHHHHHhc-CcccCC-------CCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHh
Q 003878 673 ---------CSEEEEEFYWLIKY-SPLHNV-------RRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYV 735 (789)
Q Consensus 673 ---------~p~~~~~~~~l~~~-sP~~~v-------~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~ 735 (789)
....++........ .|.... ... ........|+|+++|++|..+|+..+.++.+.+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~P~l~i~G~~D~~~p~~~~~~~~~~~p~~ 228 (273)
T 1xkl_A 153 PKFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYF----TDERFGSVKRVYIVCTEDKGIPEEFQRWQIDNIGVT 228 (273)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCC----CTTTGGGSCEEEEEETTCTTTTHHHHHHHHHHHCCS
T ss_pred HHHHHHHhhccCCHHHHHHHHHhcCCCchhhhhhhccccc----chhhhCCCCeEEEEeCCccCCCHHHHHHHHHhCCCC
Confidence 00011111111111 111000 000 000012468999999999999999888877766432
Q ss_pred hccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 736 LCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
++.+++++||....... .+..+.+.+|+.+..
T Consensus 229 --------------~~~~i~~aGH~~~~e~P--~~~~~~i~~fl~~~~ 260 (273)
T 1xkl_A 229 --------------EAIEIKGADHMAMLCEP--QKLCASLLEIAHKYN 260 (273)
T ss_dssp --------------EEEEETTCCSCHHHHSH--HHHHHHHHHHHHHCC
T ss_pred --------------eEEEeCCCCCCchhcCH--HHHHHHHHHHHHHhc
Confidence 78899999998643333 356677888987653
|
| >2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.5e-12 Score=136.44 Aligned_cols=122 Identities=12% Similarity=0.068 Sum_probs=84.9
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCC
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 595 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~ 595 (789)
.+| .+|.+...-|++ ++.|.||++||..+.... |... ...|.++||.|+++|+||.|..... ....
T Consensus 10 ~~g-~~l~y~~~G~~~----~~~~~vv~~hG~~~~~~~--~~~~-~~~l~~~g~~vi~~d~~g~g~s~~~------~~~~ 75 (356)
T 2e3j_A 10 CRG-TRIHAVADSPPD----QQGPLVVLLHGFPESWYS--WRHQ-IPALAGAGYRVVAIDQRGYGRSSKY------RVQK 75 (356)
T ss_dssp ETT-EEEEEEEECCTT----CCSCEEEEECCTTCCGGG--GTTT-HHHHHHTTCEEEEECCTTSTTSCCC------CSGG
T ss_pred cCC-eEEEEEEecCCC----CCCCEEEEECCCCCcHHH--HHHH-HHHHHHcCCEEEEEcCCCCCCCCCC------Cccc
Confidence 478 888887765542 346899999998765433 3332 3445448999999999997754211 0111
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 596 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
..+++++.+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+..+..
T Consensus 76 ~~~~~~~~~~~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 131 (356)
T 2e3j_A 76 AYRIKELVGDVVGVLDS--YGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 131 (356)
T ss_dssp GGSHHHHHHHHHHHHHH--TTCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCC
T ss_pred ccCHHHHHHHHHHHHHH--cCCCCeEEEEECHhHHHHHHHHHhCcHhhcEEEEECCcc
Confidence 23455555555555543 345689999999999999999999999999999876543
|
| >3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.8e-11 Score=128.28 Aligned_cols=118 Identities=13% Similarity=0.007 Sum_probs=90.2
Q ss_pred eEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEee--------cCCCCCChhHHh-cc
Q 003878 520 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANI--------RGGGEYGEEWHK-GG 590 (789)
Q Consensus 520 ~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~--------RG~g~~g~~~~~-~~ 590 (789)
..+++.|++|++. .++.|+||.+||+.. . +. +||+++.+|. ||+.++|. |++ .+
T Consensus 90 ~~~~~~i~lP~~~--~~p~Pvii~i~~~~~-------~------~~-~G~a~~~~~~~~v~~~~~~gs~g~g~-f~~ly~ 152 (375)
T 3pic_A 90 ISFTVTITYPSSG--TAPYPAIIGYGGGSL-------P------AP-AGVAMINFNNDNIAAQVNTGSRGQGK-FYDLYG 152 (375)
T ss_dssp EEEEEEEECCSSS--CSSEEEEEEETTCSS-------C------CC-TTCEEEEECHHHHSCCSSGGGTTCSH-HHHHHC
T ss_pred eEEEEEEECCCCC--CCCccEEEEECCCcc-------c------cC-CCeEEEEecccccccccCCCCcccee-cccccC
Confidence 6788999999874 378999999998421 0 33 8999999987 66666776 442 22
Q ss_pred c-ccCCcchH--HHHHHHHHHHHHcC--CCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccc
Q 003878 591 A-LAKKQNCF--DDFISASEYLISAG--YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDM 655 (789)
Q Consensus 591 ~-~~~~~~~~--~D~~~~~~~L~~~~--~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~ 655 (789)
. ..++.-.. -|+..+++||..+. .+|++||+|+|+|+||..++++++.. ++++++|+++|.++-
T Consensus 153 ~~~~~gal~awaWg~~raid~L~~~~~~~VD~~RIgv~G~S~gG~~al~~aA~D-~Ri~~~v~~~~g~~G 221 (375)
T 3pic_A 153 SSHSAGAMTAWAWGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFE-KRIVLTLPQESGAGG 221 (375)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHCGGGCEEEEEEEEEEETHHHHHHHHHHHHC-TTEEEEEEESCCTTT
T ss_pred CccchHHHHHHHHHHHHHHHHHHhCCccCcChhhEEEEEeCCccHHHHHHHhcC-CceEEEEeccCCCCc
Confidence 1 11221111 47899999999998 89999999999999999999999996 489999999876543
|
| >3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.8e-12 Score=132.17 Aligned_cols=208 Identities=13% Similarity=0.016 Sum_probs=125.6
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCC
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 614 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~ 614 (789)
.++.|.||++||..+.. ..|. .+...|+ .+|.|+++|+||.|... ......++++..+.+..+++.-
T Consensus 17 ~~~~~~vv~~HG~~~~~--~~~~-~~~~~l~-~~~~v~~~d~~G~G~s~--------~~~~~~~~~~~~~~~~~~l~~~- 83 (267)
T 3fla_A 17 PDARARLVCLPHAGGSA--SFFF-PLAKALA-PAVEVLAVQYPGRQDRR--------HEPPVDSIGGLTNRLLEVLRPF- 83 (267)
T ss_dssp TTCSEEEEEECCTTCCG--GGGH-HHHHHHT-TTEEEEEECCTTSGGGT--------TSCCCCSHHHHHHHHHHHTGGG-
T ss_pred CCCCceEEEeCCCCCCc--hhHH-HHHHHhc-cCcEEEEecCCCCCCCC--------CCCCCcCHHHHHHHHHHHHHhc-
Confidence 35679999999986542 2333 3455666 67999999999976421 1122345667666666666542
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhCCCc----eeEEEecCCcccccccccc--cCC-ccc---hhhcCC-C----CcH--
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQRPDL----FGCALAHVGVMDMLRYHKF--TIG-HAW---VSDFGC-S----EEE-- 677 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~~pd~----f~a~v~~~p~~d~~~~~~~--~~~-~~~---~~e~g~-p----~~~-- 677 (789)
..+++.++|+|+||.+++.++.++|++ ++++|+..+.......... ... ..+ ...++. + .++
T Consensus 84 -~~~~~~lvG~S~Gg~ia~~~a~~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (267)
T 3fla_A 84 -GDRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGRRAPSRYRDDDVRGASDERLVAELRKLGGSDAAMLADPEL 162 (267)
T ss_dssp -TTSCEEEEEETHHHHHHHHHHHHTTTTTCCCCSEEEEESCCCTTCCCCSCTTCCCHHHHHHHHHHTCHHHHHHHHSHHH
T ss_pred -CCCceEEEEeChhHHHHHHHHHhhhhhccccccEEEECCCCccccccchhhcccchHHHHHHHHHhcCcchhhccCHHH
Confidence 457899999999999999999999986 7888877654322111000 000 000 001110 0 011
Q ss_pred ---------HHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCc
Q 003878 678 ---------EEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNP 748 (789)
Q Consensus 678 ---------~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 748 (789)
..+..+..+.+... .. ...|+|+++|++|..+++..+.++.+.+ ..+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~P~l~i~g~~D~~~~~~~~~~~~~~~-------------~~~ 218 (267)
T 3fla_A 163 LAMVLPAIRSDYRAVETYRHEPG-RR----------VDCPVTVFTGDHDPRVSVGEARAWEEHT-------------TGP 218 (267)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCTT-CC----------BSSCEEEEEETTCTTCCHHHHHGGGGGB-------------SSC
T ss_pred HHHHHHHHHHHHHhhhccccccc-Cc----------CCCCEEEEecCCCCCCCHHHHHHHHHhc-------------CCC
Confidence 11222333333222 23 2679999999999999987766654432 335
Q ss_pred EEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 749 IIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 749 ~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
+++.++++ ||...... ..+....+.+||.+..
T Consensus 219 ~~~~~~~g-gH~~~~~~--~~~~~~~i~~fl~~~~ 250 (267)
T 3fla_A 219 ADLRVLPG-GHFFLVDQ--AAPMIATMTEKLAGPA 250 (267)
T ss_dssp EEEEEESS-STTHHHHT--HHHHHHHHHHHTC---
T ss_pred ceEEEecC-CceeeccC--HHHHHHHHHHHhcccc
Confidence 78999998 99864322 2355666777876543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.3e-10 Score=122.15 Aligned_cols=256 Identities=11% Similarity=0.064 Sum_probs=164.3
Q ss_pred EEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeec----
Q 003878 158 ATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVS---- 233 (789)
Q Consensus 158 ~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~---- 233 (789)
.+|++||+++++.+.. +... .. ..+..+.|+++ .+++++..++...+|....
T Consensus 12 ~~v~v~d~~~~~~~~~-~~~~-------~~-----~~~~~~s~dg~-----------~l~~~~~~d~~i~v~d~~~~~~~ 67 (391)
T 1l0q_A 12 DNISVIDVTSNKVTAT-IPVG-------SN-----PMGAVISPDGT-----------KVYVANAHSNDVSIIDTATNNVI 67 (391)
T ss_dssp TEEEEEETTTTEEEEE-EECS-------SS-----EEEEEECTTSS-----------EEEEEEGGGTEEEEEETTTTEEE
T ss_pred CEEEEEECCCCeEEEE-eecC-------CC-----cceEEECCCCC-----------EEEEECCCCCeEEEEECCCCeEE
Confidence 3799999999976531 1111 00 12334456764 3445555778888887543
Q ss_pred -----ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEe
Q 003878 234 -----QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVT 308 (789)
Q Consensus 234 -----~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~S 308 (789)
......++|+|||+.|+++... ...|+++++.+... +..+.... ....+.|+
T Consensus 68 ~~~~~~~~v~~~~~spdg~~l~~~~~~------------------~~~v~v~d~~~~~~--~~~~~~~~---~~~~~~~s 124 (391)
T 1l0q_A 68 ATVPAGSSPQGVAVSPDGKQVYVTNMA------------------SSTLSVIDTTSNTV--AGTVKTGK---SPLGLALS 124 (391)
T ss_dssp EEEECSSSEEEEEECTTSSEEEEEETT------------------TTEEEEEETTTTEE--EEEEECSS---SEEEEEEC
T ss_pred EEEECCCCccceEECCCCCEEEEEECC------------------CCEEEEEECCCCeE--EEEEeCCC---CcceEEEC
Confidence 2234678999999999887432 24689999876532 22333222 24678999
Q ss_pred cCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEE
Q 003878 309 EDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIR 388 (789)
Q Consensus 309 pDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~ 388 (789)
|||++|++.... ...|+++|+.++. ....+..+.......|+|+|+.+++.... +..|+.
T Consensus 125 ~dg~~l~~~~~~----~~~v~~~d~~~~~-------------~~~~~~~~~~~~~~~~~~dg~~l~~~~~~---~~~v~~ 184 (391)
T 1l0q_A 125 PDGKKLYVTNNG----DKTVSVINTVTKA-------------VINTVSVGRSPKGIAVTPDGTKVYVANFD---SMSISV 184 (391)
T ss_dssp TTSSEEEEEETT----TTEEEEEETTTTE-------------EEEEEECCSSEEEEEECTTSSEEEEEETT---TTEEEE
T ss_pred CCCCEEEEEeCC----CCEEEEEECCCCc-------------EEEEEecCCCcceEEECCCCCEEEEEeCC---CCEEEE
Confidence 999999776532 3579999998742 11222222222234589999988776543 367999
Q ss_pred EECCCCCCeEEeccCCCCceeeeEEEecCCE-EEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEE
Q 003878 389 VDLKEPNDWFEVIPEAERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFI 467 (789)
Q Consensus 389 ~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~ 467 (789)
+|+.+++ ....++.. ..+..+.+++++. +++.........|++||+.+++.+..+..+. .+..+.++++++.+++
T Consensus 185 ~d~~~~~-~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~ 260 (391)
T 1l0q_A 185 IDTVTNS-VIDTVKVE--AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYV 260 (391)
T ss_dssp EETTTTE-EEEEEECS--SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEE
T ss_pred EECCCCe-EEEEEecC--CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEE
Confidence 9998875 33344433 4567788887654 4444432233589999999887655555443 3556788999998877
Q ss_pred EEcCCCCCcEEEEEECCCCC
Q 003878 468 SFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 468 ~~ss~~~P~~ly~~dl~tg~ 487 (789)
+.+ .-..++.||+.+++
T Consensus 261 s~~---~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 261 ALS---FXNTVSVIDTATNT 277 (391)
T ss_dssp EET---TTTEEEEEETTTTE
T ss_pred EcC---CCCEEEEEECCCCc
Confidence 653 23789999999885
|
| >2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-12 Score=139.11 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=77.8
Q ss_pred CCccEEEEEcCCCCccCC---CCCC----------HHHHHHHHcCCeEEEEEeecCCCCCChhHHh-cccc-cCC-cchH
Q 003878 536 GSHPCLLYGYGGFNISVT---PSFS----------VSRTILMRHLGAVFCIANIRGGGEYGEEWHK-GGAL-AKK-QNCF 599 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~---~~~~----------~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~-~~~~-~~~-~~~~ 599 (789)
++.|+||++||..+.... ..|. ......|.++||.|+++|+||.|.....-.. .+.. ... ....
T Consensus 48 ~~~~~vv~~hG~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~ 127 (354)
T 2rau_A 48 GGNDAVLILPGTWSSGEQLVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYRTHYVPPFLKDRQLSFTANWGWSTWI 127 (354)
T ss_dssp CCEEEEEEECCTTCCHHHHHHSEETTEECSCCCGGGCHHHHHHHTTEEEEEEECGGGGCCTTCCGGGGGGGTTCSHHHHH
T ss_pred CCCCEEEEECCCCCCccccccccccccccccccchhhHHHHHHhCCCEEEEecCCCCCCCCcccccccccccCCcHHHHH
Confidence 456899999998766431 0111 1234555558999999999997754321100 0000 111 2224
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-CCceeEEEecCC
Q 003878 600 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR-PDLFGCALAHVG 651 (789)
Q Consensus 600 ~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-pd~f~a~v~~~p 651 (789)
+|+.+++++|.++ .+.++++++|+|+||.+++.++.++ |++++++|+..+
T Consensus 128 ~d~~~~~~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~~p~~v~~lvl~~~ 178 (354)
T 2rau_A 128 SDIKEVVSFIKRD--SGQERIYLAGESFGGIAALNYSSLYWKNDIKGLILLDG 178 (354)
T ss_dssp HHHHHHHHHHHHH--HCCSSEEEEEETHHHHHHHHHHHHHHHHHEEEEEEESC
T ss_pred HHHHHHHHHHHHh--cCCceEEEEEECHhHHHHHHHHHhcCccccceEEEecc
Confidence 7888888888765 3457899999999999999999998 999999998844
|
| >2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.2e-12 Score=135.64 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=75.5
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEee----cCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHc
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANI----RGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA 612 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~----RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~ 612 (789)
..|+||++||..+......+.......|. +||.|+.+|+ ||.|.... ....+|+.+.+++|.+.
T Consensus 37 ~~~~vvllHG~~~~~~~~~~~~~l~~~L~-~g~~Vi~~Dl~~D~~G~G~S~~-----------~~~~~d~~~~~~~l~~~ 104 (335)
T 2q0x_A 37 ARRCVLWVGGQTESLLSFDYFTNLAEELQ-GDWAFVQVEVPSGKIGSGPQDH-----------AHDAEDVDDLIGILLRD 104 (335)
T ss_dssp SSSEEEEECCTTCCTTCSTTHHHHHHHHT-TTCEEEEECCGGGBTTSCSCCH-----------HHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCccccchhHHHHHHHHHH-CCcEEEEEeccCCCCCCCCccc-----------cCcHHHHHHHHHHHHHH
Confidence 45789999996544333333223445565 8999999954 77664321 12357888888888874
Q ss_pred CCCCCCcEEEEeeChHHHHHHHHHH--hCCCceeEEEecCCccc
Q 003878 613 GYTQSRKLCIEGGSNGGLLVGACIN--QRPDLFGCALAHVGVMD 654 (789)
Q Consensus 613 ~~~d~~~i~i~G~S~GG~l~~~~~~--~~pd~f~a~v~~~p~~d 654 (789)
.+.+++.++|||+||.+++.++. .+|++++++|+..|+.+
T Consensus 105 --l~~~~~~LvGhSmGG~iAl~~A~~~~~p~rV~~lVL~~~~~~ 146 (335)
T 2q0x_A 105 --HCMNEVALFATSTGTQLVFELLENSAHKSSITRVILHGVVCD 146 (335)
T ss_dssp --SCCCCEEEEEEGGGHHHHHHHHHHCTTGGGEEEEEEEEECCC
T ss_pred --cCCCcEEEEEECHhHHHHHHHHHhccchhceeEEEEECCccc
Confidence 34579999999999999999988 47999999999887654
|
| >3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A | Back alignment and structure |
|---|
Probab=99.37 E-value=5.1e-12 Score=132.58 Aligned_cols=114 Identities=9% Similarity=-0.045 Sum_probs=83.2
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCC
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 595 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~ 595 (789)
.+| .+|.+...- +.|.||++||..+.... |... ...|.++ |.|+++|.||.|..... ..
T Consensus 17 ~~g-~~l~~~~~g--------~~~~vv~lHG~~~~~~~--~~~~-~~~L~~~-~~vi~~D~~G~G~S~~~--------~~ 75 (301)
T 3kda_A 17 VDG-VKLHYVKGG--------QGPLVMLVHGFGQTWYE--WHQL-MPELAKR-FTVIAPDLPGLGQSEPP--------KT 75 (301)
T ss_dssp ETT-EEEEEEEEE--------SSSEEEEECCTTCCGGG--GTTT-HHHHTTT-SEEEEECCTTSTTCCCC--------SS
T ss_pred eCC-eEEEEEEcC--------CCCEEEEECCCCcchhH--HHHH-HHHHHhc-CeEEEEcCCCCCCCCCC--------CC
Confidence 488 888765442 45799999998766543 3332 3456635 99999999998764322 22
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCc-EEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 596 QNCFDDFISASEYLISAGYTQSRK-LCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~~~-i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
..+++|+.+.+..+++. ...++ +.++|||+||.+++.++.++|++++++|+..|.
T Consensus 76 ~~~~~~~~~~l~~~l~~--l~~~~p~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 131 (301)
T 3kda_A 76 GYSGEQVAVYLHKLARQ--FSPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAP 131 (301)
T ss_dssp CSSHHHHHHHHHHHHHH--HCSSSCEEEEEETHHHHTTHHHHHHCGGGEEEEEEESSC
T ss_pred CccHHHHHHHHHHHHHH--cCCCccEEEEEeCccHHHHHHHHHhChhhccEEEEEccC
Confidence 34566666666665554 23456 999999999999999999999999999998875
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.4e-12 Score=134.61 Aligned_cols=208 Identities=15% Similarity=0.045 Sum_probs=123.0
Q ss_pred CCccEEEEEcCC-CCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCC
Q 003878 536 GSHPCLLYGYGG-FNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 614 (789)
Q Consensus 536 ~~~P~ll~~hGg-~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~ 614 (789)
++.|.||++||. ++......|... ...|. ..|.|+++|.||.|..... .....+++++.+.+..+++.
T Consensus 34 g~~~~vvllHG~~pg~~~~~~w~~~-~~~L~-~~~~via~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~-- 102 (291)
T 2wue_A 34 GNDQTVVLLHGGGPGAASWTNFSRN-IAVLA-RHFHVLAVDQPGYGHSDKR-------AEHGQFNRYAAMALKGLFDQ-- 102 (291)
T ss_dssp TCSSEEEEECCCCTTCCHHHHTTTT-HHHHT-TTSEEEEECCTTSTTSCCC-------SCCSSHHHHHHHHHHHHHHH--
T ss_pred CCCCcEEEECCCCCccchHHHHHHH-HHHHH-hcCEEEEECCCCCCCCCCC-------CCCCcCHHHHHHHHHHHHHH--
Confidence 344689999997 332222234332 34555 4699999999998764321 11134566666666655554
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc-c-----------cc--cCC----ccchhhc-CCC-
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY-H-----------KF--TIG----HAWVSDF-GCS- 674 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~-~-----------~~--~~~----~~~~~e~-g~p- 674 (789)
...+++.++|||+||.+++.++.++|++++++|+..|....... . .. ... ..+...+ ..+
T Consensus 103 l~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (291)
T 2wue_A 103 LGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGGLSINLFAPDPTEGVKRLSKFSVAPTRENLEAFLRVMVYDKN 182 (291)
T ss_dssp HTCCSEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCSSSCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHTSCSSGG
T ss_pred hCCCCeEEEEEChhHHHHHHHHHhChHhhcEEEEECCCCCCccccccccchhhHHHHHHhccCCHHHHHHHHHHhccCcc
Confidence 22368999999999999999999999999999998775421100 0 00 000 0000000 111
Q ss_pred -C-------------cHHHHHHHHh----cC------cc--cCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHH
Q 003878 675 -E-------------EEEEFYWLIK----YS------PL--HNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKL 728 (789)
Q Consensus 675 -~-------------~~~~~~~l~~----~s------P~--~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~ 728 (789)
. +++.+..+.. +. +. ..+.++ ..|+|+++|++|..+|+..+.++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~P~lvi~G~~D~~~~~~~~~~~ 252 (291)
T 2wue_A 183 LITPELVDQRFALASTPESLTATRAMGKSFAGADFEAGMMWREVYRL----------RQPVLLIWGREDRVNPLDGALVA 252 (291)
T ss_dssp GSCHHHHHHHHHHHTSHHHHHHHHHHHHHHTSTTGGGGCGGGTGGGC----------CSCEEEEEETTCSSSCGGGGHHH
T ss_pred cCCHHHHHHHHHHhcCchHHHHHHHHHhhccccccccchhHHHHhhC----------CCCeEEEecCCCCCCCHHHHHHH
Confidence 0 1111111111 00 00 122232 68999999999999999888777
Q ss_pred HHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 729 LATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 729 ~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
.+.+.. .++.+++++||....... .+..+.+.+||.
T Consensus 253 ~~~~p~--------------~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~ 288 (291)
T 2wue_A 253 LKTIPR--------------AQLHVFGQCGHWVQVEKF--DEFNKLTIEFLG 288 (291)
T ss_dssp HHHSTT--------------EEEEEESSCCSCHHHHTH--HHHHHHHHHHTT
T ss_pred HHHCCC--------------CeEEEeCCCCCChhhhCH--HHHHHHHHHHHh
Confidence 655432 478999999998643222 345556677764
|
| >3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4.5e-12 Score=130.59 Aligned_cols=204 Identities=16% Similarity=0.055 Sum_probs=119.1
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
..|.||++||..+... .|.. ....|. ..|.|+++|.||.|..... ...+++++.+.+..+++. ..
T Consensus 15 ~~~~vvllHG~~~~~~--~w~~-~~~~L~-~~~~via~Dl~G~G~S~~~---------~~~~~~~~a~dl~~~l~~--l~ 79 (255)
T 3bf7_A 15 NNSPIVLVHGLFGSLD--NLGV-LARDLV-NDHNIIQVDVRNHGLSPRE---------PVMNYPAMAQDLVDTLDA--LQ 79 (255)
T ss_dssp CCCCEEEECCTTCCTT--TTHH-HHHHHT-TTSCEEEECCTTSTTSCCC---------SCCCHHHHHHHHHHHHHH--HT
T ss_pred CCCCEEEEcCCcccHh--HHHH-HHHHHH-hhCcEEEecCCCCCCCCCC---------CCcCHHHHHHHHHHHHHH--cC
Confidence 4578999999876543 4544 345566 4599999999998764321 123455554444444433 12
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecC--Ccccccc-c------c---cc-cCCc-cchhh-cCC-CCcHHHH
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV--GVMDMLR-Y------H---KF-TIGH-AWVSD-FGC-SEEEEEF 680 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~--p~~d~~~-~------~---~~-~~~~-~~~~e-~g~-p~~~~~~ 680 (789)
.+++.++|||+||.+++.++.++|++++++|+.. |...... . . .. .... ....+ +.. ..++...
T Consensus 80 ~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (255)
T 3bf7_A 80 IDKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVI 159 (255)
T ss_dssp CSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCCSCCCHHHHHHHHHHHHSCCCSHHHHHHHHTTTCCCHHHH
T ss_pred CCCeeEEeeCccHHHHHHHHHhCcHhhccEEEEcCCcccCCcccHHHHHHHHHhccccccccHHHHHHHHhhhcchhHHH
Confidence 3589999999999999999999999999998753 3211100 0 0 00 0000 00000 000 0011111
Q ss_pred HHHHh--------------------cCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCC
Q 003878 681 YWLIK--------------------YSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSL 740 (789)
Q Consensus 681 ~~l~~--------------------~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~ 740 (789)
.++.. ......+.++ ..|+|+++|++|..+++..+.++.+.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~P~l~i~G~~D~~~~~~~~~~~~~~~~------- 222 (255)
T 3bf7_A 160 QFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAW----------DHPALFIPGGNSPYVSEQYRDDLLAQFP------- 222 (255)
T ss_dssp HHHHTTEETTEESSCHHHHHHTHHHHHCCCCCCCC----------CSCEEEECBTTCSTTCGGGHHHHHHHCT-------
T ss_pred HHHHHhccCCceeecHHHHHhhhhhcccccccccc----------CCCeEEEECCCCCCCCHHHHHHHHHHCC-------
Confidence 11110 0000112232 6899999999999999888766654432
Q ss_pred CCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 741 ENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 741 ~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
..++.+++++||....... ....+.+.+|+.+
T Consensus 223 -------~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~ 254 (255)
T 3bf7_A 223 -------QARAHVIAGAGHWVHAEKP--DAVLRAIRRYLND 254 (255)
T ss_dssp -------TEEECCBTTCCSCHHHHCH--HHHHHHHHHHHHT
T ss_pred -------CCeEEEeCCCCCccccCCH--HHHHHHHHHHHhc
Confidence 2588999999998643322 3456677888864
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-12 Score=138.55 Aligned_cols=149 Identities=12% Similarity=0.002 Sum_probs=99.2
Q ss_pred CCCCCCcEEEEeeChHHHHHHHHHHhCCCcee-EEEecCCc--ccccccccccCCccchhhcCCCCcHHHHHHHHhcCcc
Q 003878 613 GYTQSRKLCIEGGSNGGLLVGACINQRPDLFG-CALAHVGV--MDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPL 689 (789)
Q Consensus 613 ~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~-a~v~~~p~--~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~ 689 (789)
..+|++||+|+|+|+||+|++.++..+|++|+ ++++.++. ........ ...+...++.+..++.......-+|+
T Consensus 6 ~~iD~~RI~v~G~S~GG~mA~~~a~~~p~~fa~g~~v~ag~p~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (318)
T 2d81_A 6 FNVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYY---TSCMYNGYPSITTPTANMKSWSGNQI 82 (318)
T ss_dssp CCEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTSSSCG---GGGSTTCCCCCHHHHHHHHHHBTTTB
T ss_pred cCcCcceEEEEEECHHHHHHHHHHHHCchhhhccceEEecccccccchHHH---HHHhhccCCCCCCHHHHHHHhhcccC
Confidence 34799999999999999999999999999998 76655442 11111000 00000001112122222111111455
Q ss_pred cCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCC--CcEEEEEeCCCCcCCCCchh-
Q 003878 690 HNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQT--NPIIGRIERKAGHGVGLPTQ- 766 (789)
Q Consensus 690 ~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~--~~~~l~~~~~~gH~~~~~~~- 766 (789)
..+..+ ..+|+||+||++|.+||+.++.+++++|++. + .++++++++++||++.....
T Consensus 83 ~~~~~l---------~~~Pvli~HG~~D~vVP~~~s~~~~~~L~~~----------g~~~~ve~~~~~g~gH~~~~~~~~ 143 (318)
T 2d81_A 83 ASVANL---------GQRKIYMWTGSSDTTVGPNVMNQLKAQLGNF----------DNSANVSYVTTTGAVHTFPTDFNG 143 (318)
T ss_dssp CCGGGG---------GGCEEEEEEETTCCSSCHHHHHHHHHHHTTT----------SCGGGEEEEEETTCCSSEEESSCC
T ss_pred ChhHcC---------CCCcEEEEeCCCCCCcCHHHHHHHHHHHHhc----------CCCcceEEEEeCCCCCCCccCCcc
Confidence 554443 3579999999999999999999999999976 5 37999999999998543221
Q ss_pred ----------------hHHHHHHHHHHHHHHHh
Q 003878 767 ----------------KMIDEAADRYGFMAKML 783 (789)
Q Consensus 767 ----------------~~~~~~~~~~~fl~~~l 783 (789)
-.++....+++||...+
T Consensus 144 ~~~~~c~~~~~pyi~~~~~d~~~~i~~ff~g~~ 176 (318)
T 2d81_A 144 AGDNSCSLSTSPYISNCNYDGAGAALKWIYGSL 176 (318)
T ss_dssp TTCCCTTSCCTTCEEECSSCHHHHHHHHHHSSC
T ss_pred cCccccccCCCCcccCCCChHHHHHHHHHhccC
Confidence 02567788999997655
|
| >1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.7e-12 Score=132.55 Aligned_cols=210 Identities=11% Similarity=0.066 Sum_probs=124.6
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
.|.||++||..+.... |.. ....|. .+|.|+++|.||.|.....-. ......+++++.+-+..+++. .+.
T Consensus 20 ~~~vvllHG~~~~~~~--w~~-~~~~L~-~~~~vi~~Dl~G~G~S~~~~~----~~~~~~~~~~~a~dl~~~l~~--l~~ 89 (271)
T 1wom_A 20 KASIMFAPGFGCDQSV--WNA-VAPAFE-EDHRVILFDYVGSGHSDLRAY----DLNRYQTLDGYAQDVLDVCEA--LDL 89 (271)
T ss_dssp SSEEEEECCTTCCGGG--GTT-TGGGGT-TTSEEEECCCSCCSSSCCTTC----CTTGGGSHHHHHHHHHHHHHH--TTC
T ss_pred CCcEEEEcCCCCchhh--HHH-HHHHHH-hcCeEEEECCCCCCCCCCCcc----cccccccHHHHHHHHHHHHHH--cCC
Confidence 3789999997655433 332 234466 589999999999886432100 001123455555555555543 234
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccc----cc-ccc-------------CCccchh-----hcCCC
Q 003878 618 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLR----YH-KFT-------------IGHAWVS-----DFGCS 674 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~----~~-~~~-------------~~~~~~~-----e~g~p 674 (789)
+++.++|||+||.+++.++.++|++++++|+..|...... +. .+. ....|.. .++.+
T Consensus 90 ~~~~lvGhS~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (271)
T 1wom_A 90 KETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQP 169 (271)
T ss_dssp SCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCT
T ss_pred CCeEEEEeCHHHHHHHHHHHhCHHhhcceEEEcCCCcCCCCCchhccCCCHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 6899999999999999999999999999998876421110 00 000 0001110 01222
Q ss_pred CcHHHHHH----HHhcCc---------------ccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHh
Q 003878 675 EEEEEFYW----LIKYSP---------------LHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYV 735 (789)
Q Consensus 675 ~~~~~~~~----l~~~sP---------------~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~ 735 (789)
..++..+. +....| ...+.++ ..|+|+++|++|..+|+..+.++.+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~P~lvi~G~~D~~~~~~~~~~~~~~~~-- 237 (271)
T 1wom_A 170 DRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKV----------TVPSLILQCADDIIAPATVGKYMHQHLP-- 237 (271)
T ss_dssp TCHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHTTC----------CSCEEEEEEETCSSSCHHHHHHHHHHSS--
T ss_pred CchHHHHHHHHHHhcCCcHHHHHHHHHHhCcchHHhcccc----------CCCEEEEEcCCCCcCCHHHHHHHHHHCC--
Confidence 22211111 111111 1122333 6799999999999999887776665443
Q ss_pred hccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 736 LCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
..++.+++++||....... .+..+.+.+||.+++
T Consensus 238 ------------~~~~~~i~~~gH~~~~e~p--~~~~~~i~~fl~~~~ 271 (271)
T 1wom_A 238 ------------YSSLKQMEARGHCPHMSHP--DETIQLIGDYLKAHV 271 (271)
T ss_dssp ------------SEEEEEEEEESSCHHHHCH--HHHHHHHHHHHHHHC
T ss_pred ------------CCEEEEeCCCCcCccccCH--HHHHHHHHHHHHhcC
Confidence 2578899999998643222 355677888987753
|
| >1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.36 E-value=8.8e-13 Score=150.38 Aligned_cols=233 Identities=15% Similarity=0.114 Sum_probs=142.0
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccC-CCCCCHHHHHHHHcCCeEEEEEeecCCC-CCChhHHhcccc
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV-TPSFSVSRTILMRHLGAVFCIANIRGGG-EYGEEWHKGGAL 592 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~-~~~~~~~~~~~l~~~G~~v~~~~~RG~g-~~g~~~~~~~~~ 592 (789)
+.|. +.+.++.|++...+++.|+||++|||..... ...+...........|++|+.+|||.+. +|+..-.... .
T Consensus 82 ~edc---l~l~v~~P~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~~~~~~g~vvv~~nYRlg~~Gf~~~~~~~~-~ 157 (522)
T 1ukc_A 82 SEDC---LFINVFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQ-N 157 (522)
T ss_dssp ESCC---CEEEEEEETTCCTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHH-S
T ss_pred CCcC---CEEEEEECCCCCCCCCCCEEEEECCCccccCCccccCcHHHHHhcCCcEEEEEecccccccccccchhccc-c
Confidence 4566 5566778876544567899999999954433 2344443222222469999999999543 3332111110 0
Q ss_pred cCCcchHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhC----CCceeEEEecCCccccccccccc--C
Q 003878 593 AKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQR----PDLFGCALAHVGVMDMLRYHKFT--I 663 (789)
Q Consensus 593 ~~~~~~~~D~~~~~~~L~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~----pd~f~a~v~~~p~~d~~~~~~~~--~ 663 (789)
......+.|.+++++|+.++- ..||+||.|+|+|+||.+++.++... +.+|+++|+++|........... .
T Consensus 158 ~~~n~gl~D~~~al~wv~~ni~~fggDp~~v~i~G~SaGg~~v~~~l~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~~~~ 237 (522)
T 1ukc_A 158 GDLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQRTVSEMEFQ 237 (522)
T ss_dssp SCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCCCCCCSGGGHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHHcCCCchhEEEEEEChHHHHHHHHHhCCCccccccchhhhhcCCCcCCcCCHHHHHHH
Confidence 123456899999999998762 35999999999999999888777653 57999999999976532221100 0
Q ss_pred CccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCe--EEEEecCCCCCCCcHHHHHHHHHHHHhhccCCC
Q 003878 664 GHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPS--TLLLTADHDDRVVPLHSLKLLATMQYVLCTSLE 741 (789)
Q Consensus 664 ~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp--~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~ 741 (789)
........|++...+..+.|++.++...+... ..........+| ++..+..-|..+.+.++.++.++.+..
T Consensus 238 ~~~~~~~~gc~~~~~~~~~Lr~~~~~~l~~a~-~~~~~~~~~~~~~~~~~f~Pv~D~~~l~~~p~~~~~~g~~~------ 310 (522)
T 1ukc_A 238 FERFVNDTGCSSARDSLECLREQDIATIQKGN-TGSPFPGGSSSPLPDWYFLPVTDGSLVPDELYNAFDAGNFI------ 310 (522)
T ss_dssp HHHHHHHTTCTTCSSHHHHHHHSCHHHHHHHS-SCCCCTTCCSSSCCSCCSCCCCCSSSSCSCHHHHHHHTCSC------
T ss_pred HHHHHHHcCCCCHHHHHHHHHcCCHHHHHHHH-HhccccccccCcccccccccccCCcccCCCHHHHHhcCCCC------
Confidence 00112234655333345556654432211100 000000001223 455666778888888888877665444
Q ss_pred CCCCCCcEEEEEeCCCCcCCC
Q 003878 742 NSPQTNPIIGRIERKAGHGVG 762 (789)
Q Consensus 742 ~~~~~~~~~l~~~~~~gH~~~ 762 (789)
++|+.+-...++||.+.
T Consensus 311 ----~vp~l~G~~~~Eg~~f~ 327 (522)
T 1ukc_A 311 ----KVPVLVGDDTDEGSNFA 327 (522)
T ss_dssp ----CCCEEEEEETBGGGGTS
T ss_pred ----CCCEEEEeecchhHHhh
Confidence 78999999999999875
|
| >2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-11 Score=131.71 Aligned_cols=120 Identities=15% Similarity=0.148 Sum_probs=79.3
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccC
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 594 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~ 594 (789)
..+| .+|.+... ++.|.||++||.++... .|... ...|.++||.|+++|.||.|.....- ....
T Consensus 17 ~~~g-~~l~y~~~--------G~g~~vvllHG~~~~~~--~w~~~-~~~L~~~g~~via~Dl~G~G~S~~~~----~~~~ 80 (328)
T 2cjp_A 17 AVNG-LNMHLAEL--------GEGPTILFIHGFPELWY--SWRHQ-MVYLAERGYRAVAPDLRGYGDTTGAP----LNDP 80 (328)
T ss_dssp EETT-EEEEEEEE--------CSSSEEEEECCTTCCGG--GGHHH-HHHHHTTTCEEEEECCTTSTTCBCCC----TTCG
T ss_pred cCCC-cEEEEEEc--------CCCCEEEEECCCCCchH--HHHHH-HHHHHHCCcEEEEECCCCCCCCCCcC----cCCc
Confidence 3478 77766543 13478999999876532 34433 34555589999999999987642110 0011
Q ss_pred CcchHHHHHHHHHHHHHc-CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 595 KQNCFDDFISASEYLISA-GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 595 ~~~~~~D~~~~~~~L~~~-~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
...+++++.+-+..+++. +. +.+++.++|||+||.+++.++.++|++++++|+..+
T Consensus 81 ~~~~~~~~a~dl~~~l~~l~~-~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~ 137 (328)
T 2cjp_A 81 SKFSILHLVGDVVALLEAIAP-NEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSV 137 (328)
T ss_dssp GGGSHHHHHHHHHHHHHHHCT-TCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred ccccHHHHHHHHHHHHHHhcC-CCCCeEEEEECHHHHHHHHHHHhChhheeEEEEEcc
Confidence 123444444444444433 21 246899999999999999999999999999998654
|
| >1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A 3qmm_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4.1e-12 Score=123.65 Aligned_cols=169 Identities=12% Similarity=-0.057 Sum_probs=116.0
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCe---EEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGA---VFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 614 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~---~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~ 614 (789)
.|.||++||..+... .|.. +...|.++|| .|+.+|+||.|.... ..++++.+.++.+++.
T Consensus 3 ~~~vv~~HG~~~~~~--~~~~-~~~~l~~~G~~~~~v~~~d~~g~g~s~~------------~~~~~~~~~~~~~~~~-- 65 (181)
T 1isp_A 3 HNPVVMVHGIGGASF--NFAG-IKSYLVSQGWSRDKLYAVDFWDKTGTNY------------NNGPVLSRFVQKVLDE-- 65 (181)
T ss_dssp CCCEEEECCTTCCGG--GGHH-HHHHHHHTTCCGGGEEECCCSCTTCCHH------------HHHHHHHHHHHHHHHH--
T ss_pred CCeEEEECCcCCCHh--HHHH-HHHHHHHcCCCCccEEEEecCCCCCchh------------hhHHHHHHHHHHHHHH--
Confidence 478999999876533 3443 4455666898 599999998764321 2456666666666654
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhC--CCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCC
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQR--PDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNV 692 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~~--pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v 692 (789)
.+.+++.++|||+||.++..++.++ |++++++|+..|......... .+. .
T Consensus 66 ~~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~------------~~~----------------~ 117 (181)
T 1isp_A 66 TGAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGKA------------LPG----------------T 117 (181)
T ss_dssp HCCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCSBC------------CCC----------------S
T ss_pred cCCCeEEEEEECccHHHHHHHHHhcCCCceEEEEEEEcCccccccccc------------CCC----------------C
Confidence 2456899999999999999999988 899999999988754321100 000 0
Q ss_pred CCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHH
Q 003878 693 RRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEA 772 (789)
Q Consensus 693 ~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~ 772 (789)
... ...|+|+++|++|..||+..+. + ...++.+++++||....... +..
T Consensus 118 ~~~---------~~~p~l~i~G~~D~~v~~~~~~-----~--------------~~~~~~~~~~~gH~~~~~~~---~~~ 166 (181)
T 1isp_A 118 DPN---------QKILYTSIYSSADMIVMNYLSR-----L--------------DGARNVQIHGVGHIGLLYSS---QVN 166 (181)
T ss_dssp CTT---------CCCEEEEEEETTCSSSCHHHHC-----C--------------BTSEEEEESSCCTGGGGGCH---HHH
T ss_pred CCc---------cCCcEEEEecCCCccccccccc-----C--------------CCCcceeeccCchHhhccCH---HHH
Confidence 011 2469999999999999987431 1 12378889999998654332 466
Q ss_pred HHHHHHHHHH
Q 003878 773 ADRYGFMAKM 782 (789)
Q Consensus 773 ~~~~~fl~~~ 782 (789)
+.+.+||.+.
T Consensus 167 ~~i~~fl~~~ 176 (181)
T 1isp_A 167 SLIKEGLNGG 176 (181)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHhcc
Confidence 6778888653
|
| >3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-11 Score=127.87 Aligned_cols=124 Identities=17% Similarity=0.134 Sum_probs=83.3
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHh
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 588 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~ 588 (789)
+...+...+| .+|.+...-+++ +.|.||++||..+... .|.. ....|. .||.|+++|.||.|.....
T Consensus 6 ~~~~~~~~~g-~~l~~~~~g~~~-----~~~~vvllHG~~~~~~--~~~~-~~~~L~-~~~~vi~~Dl~G~G~S~~~--- 72 (285)
T 3bwx_A 6 EDRYWTSSDG-LRLHFRAYEGDI-----SRPPVLCLPGLTRNAR--DFED-LATRLA-GDWRVLCPEMRGRGDSDYA--- 72 (285)
T ss_dssp EEEEEECTTS-CEEEEEEECBCT-----TSCCEEEECCTTCCGG--GGHH-HHHHHB-BTBCEEEECCTTBTTSCCC---
T ss_pred ccCeeecCCC-ceEEEEEcCCCC-----CCCcEEEECCCCcchh--hHHH-HHHHhh-cCCEEEeecCCCCCCCCCC---
Confidence 3455677899 898877654332 2477999999765532 3443 455666 5999999999998754321
Q ss_pred cccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecC
Q 003878 589 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV 650 (789)
Q Consensus 589 ~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~ 650 (789)
......+++++.+-+..+++. ...+++.++|||+||.+++.++.++|++++++|+..
T Consensus 73 ---~~~~~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~ 129 (285)
T 3bwx_A 73 ---KDPMTYQPMQYLQDLEALLAQ--EGIERFVAIGTSLGGLLTMLLAAANPARIAAAVLND 129 (285)
T ss_dssp ---SSGGGCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEES
T ss_pred ---CCccccCHHHHHHHHHHHHHh--cCCCceEEEEeCHHHHHHHHHHHhCchheeEEEEec
Confidence 001122344444433333332 123589999999999999999999999999998853
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.6e-10 Score=119.60 Aligned_cols=245 Identities=11% Similarity=0.033 Sum_probs=158.2
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..+..+.|||||++|+-+ +...+|++||+.+++.+. .+.... .
T Consensus 56 ~~v~~~~~s~d~~~l~s~-----s~Dg~v~iWd~~~~~~~~-~~~~~~----------------------~--------- 98 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSA-----SQDGKLIIWDSYTTNKVH-AIPLRS----------------------S--------- 98 (340)
T ss_dssp SCEEEEEECTTSSEEEEE-----ETTTEEEEEETTTCCEEE-EEECSS----------------------S---------
T ss_pred CceEEEEECCCCCEEEEE-----eCCCcEEEEECCCCCcce-EeecCC----------------------c---------
Confidence 457788999999998843 233489999999986543 111110 0
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
....++|+|||+.|+....+ ..+.++++.+.......
T Consensus 99 ------------------------~v~~~~~s~~~~~l~s~~~d-------------------~~v~iw~~~~~~~~~~~ 135 (340)
T 1got_B 99 ------------------------WVMTCAYAPSGNYVACGGLD-------------------NICSIYNLKTREGNVRV 135 (340)
T ss_dssp ------------------------CEEEEEECTTSSEEEEEETT-------------------CEEEEEETTTCSBSCEE
T ss_pred ------------------------cEEEEEECCCCCEEEEEeCC-------------------CeEEEEECccCCCccee
Confidence 14678999999988866432 35888888765433223
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCC
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDD 370 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG 370 (789)
......+...+..+.|+++++ ++..+. ...|.++|+.++. ....+........ ..|+|+|
T Consensus 136 ~~~~~~h~~~v~~~~~~~~~~-l~s~s~-----d~~i~~wd~~~~~-------------~~~~~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 136 SRELAGHTGYLSCCRFLDDNQ-IVTSSG-----DTTCALWDIETGQ-------------QTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp EEEEECCSSCEEEEEEEETTE-EEEEET-----TSCEEEEETTTTE-------------EEEEECCCSSCEEEEEECTTS
T ss_pred EEEecCCCccEEEEEECCCCc-EEEEEC-----CCcEEEEECCCCc-------------EEEEEcCCCCceEEEEECCCC
Confidence 222223344566788999987 433332 2448889998742 1222222212122 3488998
Q ss_pred CEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-
Q 003878 371 TVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE- 449 (789)
Q Consensus 371 ~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~- 449 (789)
+.|+..+. +..|..+|+.++.....+..+. ..+..+.+++++.++++...++ .|.+||+.+++....+..+
T Consensus 197 ~~l~sg~~----d~~v~~wd~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~d~--~v~iwd~~~~~~~~~~~~~~ 268 (340)
T 1got_B 197 RLFVSGAC----DASAKLWDVREGMCRQTFTGHE--SDINAICFFPNGNAFATGSDDA--TCRLFDLRADQELMTYSHDN 268 (340)
T ss_dssp SEEEEEET----TSCEEEEETTTCSEEEEECCCS--SCEEEEEECTTSSEEEEEETTS--CEEEEETTTTEEEEEECCTT
T ss_pred CEEEEEeC----CCcEEEEECCCCeeEEEEcCCc--CCEEEEEEcCCCCEEEEEcCCC--cEEEEECCCCcEEEEEccCC
Confidence 87664332 3578899998876333443343 5678899998777888888887 6889999877654444433
Q ss_pred -CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 450 -IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 450 -~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
...+..++++|+++.++.... -+.+..||..+++
T Consensus 269 ~~~~v~~~~~s~~g~~l~~g~~----d~~i~vwd~~~~~ 303 (340)
T 1got_B 269 IICGITSVSFSKSGRLLLAGYD----DFNCNVWDALKAD 303 (340)
T ss_dssp CCSCEEEEEECTTSSEEEEEET----TSEEEEEETTTCC
T ss_pred cccceEEEEECCCCCEEEEECC----CCeEEEEEcccCc
Confidence 345778899999997765433 3689999988775
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=8.4e-10 Score=118.40 Aligned_cols=248 Identities=8% Similarity=0.026 Sum_probs=150.0
Q ss_pred EeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceee
Q 003878 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFF 214 (789)
Q Consensus 135 ~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 214 (789)
.++.+||||++++++....+ .|+++|+++++.+.. +....+ ..|+.
T Consensus 92 ~~~~~s~dg~~l~v~~~~~~----~v~~~d~~~~~~~~~-~~~~~~-----------------~~~~~------------ 137 (353)
T 3vgz_A 92 FGATINNTTQTLWFGNTVNS----AVTAIDAKTGEVKGR-LVLDDR-----------------KRTEE------------ 137 (353)
T ss_dssp CSEEEETTTTEEEEEETTTT----EEEEEETTTCCEEEE-EESCCC-----------------CCCSS------------
T ss_pred ceEEECCCCCEEEEEecCCC----EEEEEeCCCCeeEEE-EecCCC-----------------ccccc------------
Confidence 46789999998876654333 799999999976531 111000 00000
Q ss_pred EEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEe
Q 003878 215 FYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK 294 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~ 294 (789)
.... ....++|+|||+.+|+.... ....|+++++.+... +..+.
T Consensus 138 ----------~~~~-------~~~~~~~s~dg~~l~~~~~~-----------------~~~~i~~~d~~~~~~--~~~~~ 181 (353)
T 3vgz_A 138 ----------VRPL-------QPRELVADDATNTVYISGIG-----------------KESVIWVVDGGNIKL--KTAIQ 181 (353)
T ss_dssp ----------CCCC-------EEEEEEEETTTTEEEEEEES-----------------SSCEEEEEETTTTEE--EEEEC
T ss_pred ----------cCCC-------CCceEEECCCCCEEEEEecC-----------------CCceEEEEcCCCCce--EEEec
Confidence 0000 02568999999998877421 234688888876432 22222
Q ss_pred cCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-c--ccc--eeEEEecC
Q 003878 295 DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-G--FDA--QYEVIAND 369 (789)
Q Consensus 295 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~--~~~--~~~~~s~d 369 (789)
.... ....+.++|||++|++... ...++++|+.++. ....... . ... .-..|+||
T Consensus 182 ~~~~--~~~~~~~s~dg~~l~~~~~-----~~~i~~~d~~~~~-------------~~~~~~~~~~~~~~~~~~~~~s~d 241 (353)
T 3vgz_A 182 NTGK--MSTGLALDSEGKRLYTTNA-----DGELITIDTADNK-------------ILSRKKLLDDGKEHFFINISLDTA 241 (353)
T ss_dssp CCCT--TCCCCEEETTTTEEEEECT-----TSEEEEEETTTTE-------------EEEEEECCCSSSCCCEEEEEEETT
T ss_pred CCCC--ccceEEECCCCCEEEEEcC-----CCeEEEEECCCCe-------------EEEEEEcCCCCCCcccceEEECCC
Confidence 1111 1235789999999887642 3578999998742 1111111 0 010 11358999
Q ss_pred CCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCCCceeeeccc
Q 003878 370 DTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSLLHQLPI 448 (789)
Q Consensus 370 G~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~ 448 (789)
|+.+|+... ....|+.+|+.+++ ....++... -..+.+++++ .+++....++ .|.+||+++++....+..
T Consensus 242 g~~l~~~~~---~~~~v~~~d~~~~~-~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~--~v~~~d~~~~~~~~~~~~ 312 (353)
T 3vgz_A 242 RQRAFITDS---KAAEVLVVDTRNGN-ILAKVAAPE---SLAVLFNPARNEAYVTHRQAG--KVSVIDAKSYKVVKTFDT 312 (353)
T ss_dssp TTEEEEEES---SSSEEEEEETTTCC-EEEEEECSS---CCCEEEETTTTEEEEEETTTT--EEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEeC---CCCEEEEEECCCCc-EEEEEEcCC---CceEEECCCCCEEEEEECCCC--eEEEEECCCCeEEEEEec
Confidence 999877653 24689999998876 222333221 1357788754 4665544444 799999998887666655
Q ss_pred CCeeEEEeecccCCcEEEEEEcC-------CCCCcEEEEEE
Q 003878 449 EIGSVNAISARREDSVVFISFTS-------FLIPGIVYQCN 482 (789)
Q Consensus 449 ~~~~v~~~s~s~d~~~l~~~~ss-------~~~P~~ly~~d 482 (789)
+. ....+.+++|++.++++..+ ...|..+++++
T Consensus 313 ~~-~~~~~~~s~dg~~l~v~~~~~~~~~~~~~~~~~v~~i~ 352 (353)
T 3vgz_A 313 PT-HPNSLALSADGKTLYVSVKQKSTKQQEATQPDDVIRIA 352 (353)
T ss_dssp CS-EEEEEEECTTSCEEEEEEECCCBTTBCCSSCEEEEEEE
T ss_pred CC-CCCeEEEcCCCCEEEEEEcccccccccccCCCcEEEEe
Confidence 43 45678899999999888765 23455565554
|
| >4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.3e-11 Score=127.39 Aligned_cols=117 Identities=13% Similarity=0.011 Sum_probs=89.2
Q ss_pred eEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEee--------cCCCCCChhHHhccc
Q 003878 520 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANI--------RGGGEYGEEWHKGGA 591 (789)
Q Consensus 520 ~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~--------RG~g~~g~~~~~~~~ 591 (789)
..+++.|++|++ .++.|+||.+||+. . .+. +||+++.+|+ +|+.++|. ++..-.
T Consensus 123 ~sf~~~i~lP~g---~~P~Pvii~~~~~~-~------------~~~-~G~A~i~f~~~~va~d~~~gsrG~g~-f~~ly~ 184 (433)
T 4g4g_A 123 ISFSASIRKPSG---AGPFPAIIGIGGAS-I------------PIP-SNVATITFNNDEFGAQMGSGSRGQGK-FYDLFG 184 (433)
T ss_dssp EEEEEEEECCSS---SCCEEEEEEESCCC-S------------CCC-TTSEEEEECHHHHSCCSSGGGTTCSH-HHHHHC
T ss_pred EEEEEEEECCCC---CCCccEEEEECCCc-c------------ccC-CCeEEEEeCCcccccccCCCcCCccc-cccccC
Confidence 556899999987 47899999999742 1 033 8999999997 45556776 443211
Q ss_pred ccCCcchH----HHHHHHHHHHHH----cCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccc
Q 003878 592 LAKKQNCF----DDFISASEYLIS----AGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDM 655 (789)
Q Consensus 592 ~~~~~~~~----~D~~~~~~~L~~----~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~ 655 (789)
.......+ -|+..+++||.. +..+|++||+|+|+|.||..++++++.. ++++++|+.+|..+-
T Consensus 185 ~~~~~gal~aWAWg~~raiDyL~~~~~~~~~VD~~RIgv~G~S~gG~~Al~aaA~D-~Ri~~vi~~~sg~~G 255 (433)
T 4g4g_A 185 RDHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCSRNGKGAFITGALV-DRIALTIPQESGAGG 255 (433)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEEEEEEETHHHHHHHHHHHHC-TTCSEEEEESCCTTT
T ss_pred CccchHHHHHHHHhHHHHHHHHHhccccCCCcChhHEEEEEeCCCcHHHHHHHhcC-CceEEEEEecCCCCc
Confidence 11112222 478889999999 7889999999999999999999999996 489999999987653
|
| >2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A | Back alignment and structure |
|---|
Probab=99.35 E-value=7.5e-12 Score=130.85 Aligned_cols=125 Identities=10% Similarity=0.006 Sum_probs=82.7
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC---CCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccccc
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT---PSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 593 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~---~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~ 593 (789)
+| .+|.+...-+. +...|+||++||..+.... +.|.......|+ ++|.|+++|+||.|...... ...
T Consensus 19 ~~-~~l~y~~~G~~----~~~~p~vvllHG~~~~~~~~~~~~~~~~~~~~L~-~~~~vi~~D~~G~G~s~~~~----~~~ 88 (286)
T 2qmq_A 19 PY-GSVTFTVYGTP----KPKRPAIFTYHDVGLNYKSCFQPLFRFGDMQEII-QNFVRVHVDAPGMEEGAPVF----PLG 88 (286)
T ss_dssp TT-EEEEEEEESCC----CTTCCEEEEECCTTCCHHHHHHHHHTSHHHHHHH-TTSCEEEEECTTTSTTCCCC----CTT
T ss_pred CC-eEEEEEeccCC----CCCCCeEEEeCCCCCCchhhhhhhhhhchhHHHh-cCCCEEEecCCCCCCCCCCC----CCC
Confidence 67 78876655322 1246899999998665421 011111345677 68999999999976421110 000
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 594 KKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 594 ~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
....+++++.+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+..|..
T Consensus 89 ~~~~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 146 (286)
T 2qmq_A 89 YQYPSLDQLADMIPCILQY--LNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDP 146 (286)
T ss_dssp CCCCCHHHHHHTHHHHHHH--HTCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred CCccCHHHHHHHHHHHHHH--hCCCcEEEEEEChHHHHHHHHHHhChhheeeEEEECCCC
Confidence 0012566666655555544 233589999999999999999999999999999988855
|
| >3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.4e-12 Score=134.16 Aligned_cols=114 Identities=16% Similarity=0.088 Sum_probs=82.1
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCc
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQ 596 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~ 596 (789)
+| .+|.+... + .++.|.||++||.++.... |... ...|. .+|.|+++|.||.|.... ....
T Consensus 15 ~g-~~l~y~~~---G---~g~~~pvvllHG~~~~~~~--w~~~-~~~L~-~~~~via~Dl~G~G~S~~--------~~~~ 75 (316)
T 3afi_E 15 LG-SSMAYRET---G---AQDAPVVLFLHGNPTSSHI--WRNI-LPLVS-PVAHCIAPDLIGFGQSGK--------PDIA 75 (316)
T ss_dssp TT-EEEEEEEE---S---CTTSCEEEEECCTTCCGGG--GTTT-HHHHT-TTSEEEEECCTTSTTSCC--------CSSC
T ss_pred CC-EEEEEEEe---C---CCCCCeEEEECCCCCchHH--HHHH-HHHHh-hCCEEEEECCCCCCCCCC--------CCCC
Confidence 67 77765543 2 1333589999998776543 3332 34566 569999999999886432 1123
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 597 NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 597 ~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
.+++++.+.+..+++. ...+++.++|+|+||.+++.++.++|++++++|+..+
T Consensus 76 ~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~ 128 (316)
T 3afi_E 76 YRFFDHVRYLDAFIEQ--RGVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEF 128 (316)
T ss_dssp CCHHHHHHHHHHHHHH--TTCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHH--cCCCCEEEEEeCccHHHHHHHHHHCHHhhhheeeecc
Confidence 4677777777666665 2336899999999999999999999999999998765
|
| >3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ... | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-11 Score=127.14 Aligned_cols=212 Identities=12% Similarity=0.065 Sum_probs=124.3
Q ss_pred cEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCC
Q 003878 539 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSR 618 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~ 618 (789)
|.||++||...... .|.. ....|.++||.|+.+|.||.|..... .....+++++.+.+..+++.-. ..+
T Consensus 4 ~~vvllHG~~~~~~--~w~~-~~~~L~~~g~~via~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~l~-~~~ 72 (257)
T 3c6x_A 4 AHFVLIHTICHGAW--IWHK-LKPLLEALGHKVTALDLAASGVDPRQ-------IEEIGSFDEYSEPLLTFLEALP-PGE 72 (257)
T ss_dssp CEEEEECCTTCCGG--GGTT-HHHHHHHTTCEEEEECCTTSTTCSCC-------GGGCCSHHHHTHHHHHHHHTSC-TTC
T ss_pred CcEEEEcCCccCcC--CHHH-HHHHHHhCCCEEEEeCCCCCCCCCCC-------cccccCHHHHHHHHHHHHHhcc-ccC
Confidence 67999999765433 3444 34556548999999999998864321 1112467777776666666521 125
Q ss_pred cEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccc-----cc----ccc-cc--CC-------------------ccc
Q 003878 619 KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDM-----LR----YHK-FT--IG-------------------HAW 667 (789)
Q Consensus 619 ~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~-----~~----~~~-~~--~~-------------------~~~ 667 (789)
++.++|||+||.++..++.++|++++++|...+.... .. ... .. .. ..+
T Consensus 73 ~~~lvGhSmGG~va~~~a~~~p~~v~~lVl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (257)
T 3c6x_A 73 KVILVGESCGGLNIAIAADKYCEKIAAAVFHNSVLPDTEHCPSYVVDKLMEVFPDWKDTTYFTYTKDGKEITGLKLGFTL 152 (257)
T ss_dssp CEEEEEEETHHHHHHHHHHHHGGGEEEEEEEEECCCCSSSCTTHHHHHHHHHSCCCTTCEEEEEEETTEEEEEEECCHHH
T ss_pred CeEEEEECcchHHHHHHHHhCchhhheEEEEecccCCCCCcchhHHHHHhhcCcchhhhhhhhccCCCCccccccccHHH
Confidence 8999999999999999999999999999987653210 00 000 00 00 000
Q ss_pred hhh-cCCCCcHHHHHHHHhc-CcccCC-------CCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhcc
Q 003878 668 VSD-FGCSEEEEEFYWLIKY-SPLHNV-------RRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCT 738 (789)
Q Consensus 668 ~~e-~g~p~~~~~~~~l~~~-sP~~~v-------~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~ 738 (789)
... +......+........ .|.... ... ........|+|+++|++|..+|+..+.++.+.+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~P~l~i~G~~D~~~p~~~~~~~~~~~~~---- 224 (257)
T 3c6x_A 153 LRENLYTLCGPEEYELAKMLTRKGSLFQNILAKRPFF----TKEGYGSIKKIYVWTDQDEIFLPEFQLWQIENYKP---- 224 (257)
T ss_dssp HHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHSCCC----CTTTGGGSCEEEEECTTCSSSCHHHHHHHHHHSCC----
T ss_pred HHHHHhcCCCHHHHHHHHHhcCCCccchhhhcccccc----ChhhcCcccEEEEEeCCCcccCHHHHHHHHHHCCC----
Confidence 000 0000011111111111 111000 000 00001246899999999999999988877776542
Q ss_pred CCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 739 SLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 739 ~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
.++++++++||....... .+..+.+.+|+..
T Consensus 225 ----------~~~~~i~~~gH~~~~e~P--~~~~~~l~~f~~~ 255 (257)
T 3c6x_A 225 ----------DKVYKVEGGDHKLQLTKT--KEIAEILQEVADT 255 (257)
T ss_dssp ----------SEEEECCSCCSCHHHHSH--HHHHHHHHHHHHH
T ss_pred ----------CeEEEeCCCCCCcccCCH--HHHHHHHHHHHHh
Confidence 278899999998643322 3455667788764
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-09 Score=116.01 Aligned_cols=271 Identities=14% Similarity=0.049 Sum_probs=170.7
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.+..+++||||++|+.+. ...|++||+.++...... .... + ..+.+. ..+..+.|++
T Consensus 53 ~v~~~~~~~~~~~l~~~~------dg~i~iw~~~~~~~~~~~-~~~~-~-~~~~~~----v~~~~~~~~~---------- 109 (337)
T 1gxr_A 53 VVCAVTISNPTRHVYTGG------KGCVKVWDISHPGNKSPV-SQLD-C-LNRDNY----IRSCKLLPDG---------- 109 (337)
T ss_dssp CCCEEEECSSSSEEEEEC------BSEEEEEETTSTTCCSCS-EEEE-C-SCTTSB----EEEEEECTTS----------
T ss_pred ceEEEEEecCCcEEEEcC------CCeEEEEECCCCCceeee-eccc-c-cCCCCc----EEEEEEcCCC----------
Confidence 467789999999998653 247999999987532211 1000 0 000111 1122233555
Q ss_pred eeEEEeeeccccceeeeeeec------------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVS------------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYH 280 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~------------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (789)
.+++++..+|...+|.+.. .-....++|+||++.|+....+ ..|+++
T Consensus 110 --~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------------------g~v~~~ 168 (337)
T 1gxr_A 110 --CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-------------------GNIAVW 168 (337)
T ss_dssp --SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT-------------------SCEEEE
T ss_pred --CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC-------------------CcEEEE
Confidence 3566777888888887654 1113578999999998876432 248888
Q ss_pred ECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc
Q 003878 281 FLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD 360 (789)
Q Consensus 281 ~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 360 (789)
++.+.. ....+.. +...+..+.|+|||++|+.... ...|+++|+.++. ..........
T Consensus 169 d~~~~~--~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~-----dg~i~~~d~~~~~-------------~~~~~~~~~~ 226 (337)
T 1gxr_A 169 DLHNQT--LVRQFQG--HTDGASCIDISNDGTKLWTGGL-----DNTVRSWDLREGR-------------QLQQHDFTSQ 226 (337)
T ss_dssp ETTTTE--EEEEECC--CSSCEEEEEECTTSSEEEEEET-----TSEEEEEETTTTE-------------EEEEEECSSC
T ss_pred eCCCCc--eeeeeec--ccCceEEEEECCCCCEEEEEec-----CCcEEEEECCCCc-------------eEeeecCCCc
Confidence 887642 2223332 3344678999999999987653 3568999998742 1111111111
Q ss_pred ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCC
Q 003878 361 AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNG 440 (789)
Q Consensus 361 ~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG 440 (789)
.....|+|+|+.+++.+. +..|..+++.+++ ...+..+. ..+..+.+++++.++++...++ .|++|++.++
T Consensus 227 v~~~~~s~~~~~l~~~~~----~~~i~~~~~~~~~-~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg--~i~~~~~~~~ 297 (337)
T 1gxr_A 227 IFSLGYCPTGEWLAVGME----SSNVEVLHVNKPD-KYQLHLHE--SCVLSLKFAYCGKWFVSTGKDN--LLNAWRTPYG 297 (337)
T ss_dssp EEEEEECTTSSEEEEEET----TSCEEEEETTSSC-EEEECCCS--SCEEEEEECTTSSEEEEEETTS--EEEEEETTTC
T ss_pred eEEEEECCCCCEEEEEcC----CCcEEEEECCCCC-eEEEcCCc--cceeEEEECCCCCEEEEecCCC--cEEEEECCCC
Confidence 122348999998887654 3568999998876 33443333 5688899998777777787776 7899999887
Q ss_pred ceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEEC
Q 003878 441 SLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 441 ~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl 483 (789)
+...... ....+..+.++++++.++.... -+.++.|++
T Consensus 298 ~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~----dg~i~iw~~ 335 (337)
T 1gxr_A 298 ASIFQSK-ESSSVLSCDISVDDKYIVTGSG----DKKATVYEV 335 (337)
T ss_dssp CEEEEEE-CSSCEEEEEECTTSCEEEEEET----TSCEEEEEE
T ss_pred eEEEEec-CCCcEEEEEECCCCCEEEEecC----CCeEEEEEE
Confidence 7643332 3455777889999987664432 345666653
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.34 E-value=6.1e-10 Score=117.87 Aligned_cols=274 Identities=14% Similarity=0.093 Sum_probs=169.6
Q ss_pred cEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccc
Q 003878 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 131 ~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
...+..+.+||||++||.+.. ...|++||+.+++... .+... ..+ ..+..+.|++
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~-----dg~i~iw~~~~~~~~~-~~~~h------~~~-----v~~~~~~~~~-------- 77 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSA-----DKLIKIWGAYDGKFEK-TISGH------KLG-----ISDVAWSSDS-------- 77 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEET-----TSCEEEEETTTCCEEE-EECCC------SSC-----EEEEEECTTS--------
T ss_pred CCcEEEEEECCCCCEEEEeeC-----CCeEEEEeCCCcccch-hhccC------CCc-----eEEEEEcCCC--------
Confidence 345788999999999985432 3369999999886543 11111 000 1122334565
Q ss_pred ceeeEEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEE
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYH 280 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (789)
.+++++..+|...+|.+.. .-....++|+||++.|+....+ ..|++|
T Consensus 78 ----~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-------------------~~i~iw 134 (312)
T 4ery_A 78 ----NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD-------------------ESVRIW 134 (312)
T ss_dssp ----SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETT-------------------SCEEEE
T ss_pred ----CEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC-------------------CcEEEE
Confidence 4677888899999998654 1123567899999988766433 248889
Q ss_pred ECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc
Q 003878 281 FLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD 360 (789)
Q Consensus 281 ~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 360 (789)
++.+... ...+. .+...+..+.|+|||++|+....+ ..|.++|+.++. ....+.....
T Consensus 135 d~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~-------------~~~~~~~~~~ 192 (312)
T 4ery_A 135 DVKTGKC--LKTLP--AHSDPVSAVHFNRDGSLIVSSSYD-----GLCRIWDTASGQ-------------CLKTLIDDDN 192 (312)
T ss_dssp ETTTCCE--EEEEC--CCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCC-------------EEEEECCSSC
T ss_pred ECCCCEE--EEEec--CCCCcEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc-------------eeeEEeccCC
Confidence 9876532 22232 233346688999999998766543 348889988742 1222221111
Q ss_pred --ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEe-cCCEEEEEEEeCCeEEEEEEEC
Q 003878 361 --AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAV-NLNQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 361 --~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~-~~~~lv~~~~~~g~~~L~~~dl 437 (789)
.....|+|+|+.|+..+. +..|..+|+.+++....+..+..........+. .++.++++...++ .|++||+
T Consensus 193 ~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg--~i~vwd~ 266 (312)
T 4ery_A 193 PPVSFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN--LVYIWNL 266 (312)
T ss_dssp CCEEEEEECTTSSEEEEEET----TTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTS--CEEEEET
T ss_pred CceEEEEECCCCCEEEEEcC----CCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCC--EEEEEEC
Confidence 122458999998876543 357999999877533334333322221122233 3366777777776 6899999
Q ss_pred CCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEE
Q 003878 438 KNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 438 ~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~d 482 (789)
.+++....+..+...+..++++|+++.++.. +...-.++..|+
T Consensus 267 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~--~~~~d~~i~~W~ 309 (312)
T 4ery_A 267 QTKEIVQKLQGHTDVVISTACHPTENIIASA--ALENDKTIKLWK 309 (312)
T ss_dssp TTCCEEEEECCCSSCEEEEEECSSSSEEEEE--ECTTTCCEEEEE
T ss_pred CCchhhhhhhccCCcEEEEeecCcCCceEEE--EccCCccEEEec
Confidence 9888767776666667788899998866533 222334455554
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-10 Score=137.87 Aligned_cols=261 Identities=11% Similarity=0.041 Sum_probs=167.3
Q ss_pred eEeCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCC--------ceEE
Q 003878 87 FKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSG--------SDWA 158 (789)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g--------~~~~ 158 (789)
+++|.++.|....++.....||+++..+++.....-.+ ....+++|| ||+.|+|+..... ....
T Consensus 137 SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~-------~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~ 208 (693)
T 3iuj_A 137 SRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD-------VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQH 208 (693)
T ss_dssp CTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE-------EESCCCEEE-TTTEEEEEESSCCC-------CCCC
T ss_pred CCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC-------ceeccEEEe-CCCEEEEEEecCcccccccccCCCc
Confidence 45788999999888888888999987666532211000 113568899 9999999986532 3356
Q ss_pred EEEEEEcCCCceecccccccccccccCccceeeeeeccccccc-cccccccccceeeEEEeeeccccceeeeeeeccccc
Q 003878 159 TIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPT-YKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKF 237 (789)
Q Consensus 159 ~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~ 237 (789)
+|+++++.|+......+... ++ . .. ..
T Consensus 209 ~v~~~~lgt~~~~~~~v~~~---------------------~~~~------------------------~~-------~~ 236 (693)
T 3iuj_A 209 KVYFHRLGTAQEDDRLVFGA---------------------IPAQ------------------------HH-------RY 236 (693)
T ss_dssp EEEEEETTSCGGGCEEEESC---------------------SGGG------------------------CC-------SE
T ss_pred EEEEEECCCCcccceEEEec---------------------CCCC------------------------Ce-------EE
Confidence 89999998875322111111 00 0 00 13
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.++.|||||+.|+++.... ....+||++++.++..+-+.+....+ ... .+ ++++|++|+|.
T Consensus 237 ~~~~~SpDg~~l~~~~~~~---------------~~~~~i~~~d~~~~~~~~~~l~~~~~-~~~--~~-~~~~g~~l~~~ 297 (693)
T 3iuj_A 237 VGATVTEDDRFLLISAANS---------------TSGNRLYVKDLSQENAPLLTVQGDLD-ADV--SL-VDNKGSTLYLL 297 (693)
T ss_dssp EEEEECTTSCEEEEEEESS---------------SSCCEEEEEETTSTTCCCEEEECSSS-SCE--EE-EEEETTEEEEE
T ss_pred EEEEEcCCCCEEEEEEccC---------------CCCcEEEEEECCCCCCceEEEeCCCC-ceE--EE-EeccCCEEEEE
Confidence 5789999999999986532 22357999999876544444443332 221 22 78999999998
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCe
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDW 397 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~ 397 (789)
++.. .....|+.++++++. ...+..++....... .|+++|++|++...++ ...+|++++++++. .
T Consensus 298 t~~~-~~~~~l~~~d~~~~~-----------~~~~~~l~~~~~~~~-~~s~~g~~lv~~~~~~-g~~~l~~~d~~g~~-~ 362 (693)
T 3iuj_A 298 TNRD-APNRRLVTVDAANPG-----------PAHWRDLIPERQQVL-TVHSGSGYLFAEYMVD-ATARVEQFDYEGKR-V 362 (693)
T ss_dssp ECTT-CTTCEEEEEETTSCC-----------GGGCEEEECCCSSCE-EEEEETTEEEEEEEET-TEEEEEEECTTSCE-E
T ss_pred ECCC-CCCCEEEEEeCCCCC-----------ccccEEEecCCCCEE-EEEEECCEEEEEEEEC-CeeEEEEEECCCCe-e
Confidence 7653 235789999998742 112445554433334 6899999999887765 45789999998654 3
Q ss_pred EEeccCCCCceeeeEEEecC-CEEEEEEEe-CCeEEEEEEECCCCce
Q 003878 398 FEVIPEAERDVLESATAVNL-NQMIVSYLS-DVKYVLQIRDLKNGSL 442 (789)
Q Consensus 398 ~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~-~g~~~L~~~dl~tG~~ 442 (789)
+.+..+ ....+..+.++++ +.+++.+.. .....|+.+|+++|+.
T Consensus 363 ~~l~~p-~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 363 REVALP-GLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp EEECCS-SSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred EEeecC-CCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 444222 2245556665543 556666554 3346899999987764
|
| >2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-11 Score=130.65 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=73.7
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
.|.||++||.++.... |... ...|.++||.|+++|.||.|..... ......+++++.+.+..+++. ...
T Consensus 46 g~~vvllHG~~~~~~~--w~~~-~~~L~~~g~rvia~Dl~G~G~S~~~------~~~~~~~~~~~a~dl~~ll~~--l~~ 114 (297)
T 2xt0_A 46 EHTFLCLHGEPSWSFL--YRKM-LPVFTAAGGRVVAPDLFGFGRSDKP------TDDAVYTFGFHRRSLLAFLDA--LQL 114 (297)
T ss_dssp SCEEEEECCTTCCGGG--GTTT-HHHHHHTTCEEEEECCTTSTTSCEE------SCGGGCCHHHHHHHHHHHHHH--HTC
T ss_pred CCeEEEECCCCCccee--HHHH-HHHHHhCCcEEEEeCCCCCCCCCCC------CCcccCCHHHHHHHHHHHHHH--hCC
Confidence 4789999998765433 3333 3445548999999999998864311 011133556665555555544 123
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 618 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
+++.++|||+||.+++.++.++|++++++|+..+.
T Consensus 115 ~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~ 149 (297)
T 2xt0_A 115 ERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTA 149 (297)
T ss_dssp CSEEEEECHHHHHHHTTHHHHCTTSEEEEEEESCC
T ss_pred CCEEEEEECchHHHHHHHHHhChHHhcEEEEECCC
Confidence 68999999999999999999999999999988764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.9e-10 Score=120.84 Aligned_cols=261 Identities=9% Similarity=-0.007 Sum_probs=164.4
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+...|..++|||||++||- |+...+|++||+.+++.... +... .. -..+..+.|++
T Consensus 63 H~~~V~~~~~s~d~~~l~s-----~s~Dg~v~vWd~~~~~~~~~-~~~~-------~~----~v~~~~~sp~g------- 118 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVS-----SSQDGKVIVWDSFTTNKEHA-VTMP-------CT----WVMACAYAPSG------- 118 (354)
T ss_dssp CSSCEEEEEECTTSSEEEE-----EETTSEEEEEETTTCCEEEE-EECS-------SS----CCCEEEECTTS-------
T ss_pred CCCeEEEEEECCCCCEEEE-----EeCCCeEEEEECCCCCcceE-EecC-------CC----CEEEEEECCCC-------
Confidence 3345788999999999883 33445899999998864321 1110 00 01122334666
Q ss_pred cceeeEEEeeeccccceeeeeeecc----------------cccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQ----------------FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNL 273 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~----------------~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~ 273 (789)
..++++..++...+|.+... -....++|+||++.|+....+
T Consensus 119 -----~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D------------------ 175 (354)
T 2pbi_B 119 -----CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGD------------------ 175 (354)
T ss_dssp -----SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETT------------------
T ss_pred -----CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCC------------------
Confidence 35677788888899876431 113568999999988865432
Q ss_pred ccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEec--CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCc
Q 003878 274 YHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE--DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 351 (789)
Q Consensus 274 ~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 351 (789)
..|.+|++.++.. +..+.... ..+..+.++| +|++|+..+.+ ..|.++|+.++. .
T Consensus 176 -~~v~lwd~~~~~~--~~~~~~h~--~~v~~~~~~~~~~g~~l~sgs~D-----g~v~~wd~~~~~-------------~ 232 (354)
T 2pbi_B 176 -GTCALWDVESGQL--LQSFHGHG--ADVLCLDLAPSETGNTFVSGGCD-----KKAMVWDMRSGQ-------------C 232 (354)
T ss_dssp -SEEEEEETTTCCE--EEEEECCS--SCEEEEEECCCSSCCEEEEEETT-----SCEEEEETTTCC-------------E
T ss_pred -CcEEEEeCCCCeE--EEEEcCCC--CCeEEEEEEeCCCCCEEEEEeCC-----CeEEEEECCCCc-------------E
Confidence 3588999876532 23344332 2344566666 67787765533 448899998742 1
Q ss_pred cEeeeccccce-eEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeE
Q 003878 352 FVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKY 430 (789)
Q Consensus 352 ~~~l~~~~~~~-~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~ 430 (789)
...+....... -..|+|+|+.|+..+. +..|..+|+..+.....+..+.....+..+.+++++.++++...++
T Consensus 233 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~-- 306 (354)
T 2pbi_B 233 VQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDY-- 306 (354)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS--
T ss_pred EEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCC--
Confidence 22222111112 2348899988775443 3568889987764222222222223466788888777888888776
Q ss_pred EEEEEECCCCceeeecccCCeeEEEeecccCCcEEE
Q 003878 431 VLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVF 466 (789)
Q Consensus 431 ~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~ 466 (789)
.|++||+.+|+.+..+..+...|..++++|+++.++
T Consensus 307 ~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~ 342 (354)
T 2pbi_B 307 TINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFC 342 (354)
T ss_dssp CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred cEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEE
Confidence 789999987877666665677788899999998655
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.3e-10 Score=125.51 Aligned_cols=271 Identities=13% Similarity=0.077 Sum_probs=173.0
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+...+..+.+||||++|+-+ +...+|++||+.+++... .+... .+... +..+.|++
T Consensus 107 h~~~V~~~~~~p~~~~l~s~-----s~Dg~i~vwd~~~~~~~~-~l~~h-------~~~V~----~v~~~~~~------- 162 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSA-----SEDATIKVWDYETGDFER-TLKGH-------TDSVQ----DISFDHSG------- 162 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEE-----ESSSCEEEEETTTCCCCE-EECCC-------SSCEE----EEEECTTS-------
T ss_pred cCCcEEEEEEcCCCCEEEEE-----eCCCeEEEEECCCCcEEE-EEecc-------CCcEE----EEEEcCCC-------
Confidence 34467889999999998843 334579999999986543 12111 11011 11123455
Q ss_pred cceeeEEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEE
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYY 279 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (789)
.+++++..+|+..||.+.. .-....++|+|||+.|+.... ...|.+
T Consensus 163 -----~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~-------------------D~~i~~ 218 (410)
T 1vyh_C 163 -----KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR-------------------DKTIKM 218 (410)
T ss_dssp -----SEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEET-------------------TSEEEE
T ss_pred -----CEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeC-------------------CCeEEE
Confidence 4788889999999997654 112467899999998876543 246899
Q ss_pred EECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc
Q 003878 280 HFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF 359 (789)
Q Consensus 280 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~ 359 (789)
|++.++.. +..+.. +...+..+.++|||++|+..+.+ ..|.++|+.++. ....+....
T Consensus 219 wd~~~~~~--~~~~~~--h~~~v~~~~~~~~g~~l~s~s~D-----~~v~vwd~~~~~-------------~~~~~~~h~ 276 (410)
T 1vyh_C 219 WEVQTGYC--VKTFTG--HREWVRMVRPNQDGTLIASCSND-----QTVRVWVVATKE-------------CKAELREHR 276 (410)
T ss_dssp EETTTCCE--EEEEEC--CSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCC-------------EEEEECCCS
T ss_pred EECCCCcE--EEEEeC--CCccEEEEEECCCCCEEEEEcCC-----CeEEEEECCCCc-------------eeeEecCCC
Confidence 99976542 233333 33456678999999998766543 348888887642 111111111
Q ss_pred ccee-EEEecC--------------------CCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCC
Q 003878 360 DAQY-EVIAND--------------------DTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN 418 (789)
Q Consensus 360 ~~~~-~~~s~d--------------------G~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~ 418 (789)
.... ..|+|+ |..|+..+ .+..|..+|+.++.....+..+. ..+..+.+++++
T Consensus 277 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs----~D~~i~iwd~~~~~~~~~~~~h~--~~v~~v~~~~~g 350 (410)
T 1vyh_C 277 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS----RDKTIKMWDVSTGMCLMTLVGHD--NWVRGVLFHSGG 350 (410)
T ss_dssp SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE----TTSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSS
T ss_pred ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe----CCCeEEEEECCCCceEEEEECCC--CcEEEEEEcCCC
Confidence 1111 225554 44444322 24679999998876344454444 467889998877
Q ss_pred EEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEE
Q 003878 419 QMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 419 ~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~d 482 (789)
..+++...++ .|++||+.+++....+..+...|..+.+++++..++ +.+ .-..+..|+
T Consensus 351 ~~l~s~s~D~--~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~-sgs---~D~~i~vW~ 408 (410)
T 1vyh_C 351 KFILSCADDK--TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVV-TGS---VDQTVKVWE 408 (410)
T ss_dssp SCEEEEETTT--EEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEE-EEE---TTSEEEEEC
T ss_pred CEEEEEeCCC--eEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEE-EEe---CCCcEEEEe
Confidence 7888888887 799999988876667766666788899999988654 222 224555554
|
| >1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A | Back alignment and structure |
|---|
Probab=99.32 E-value=6.2e-12 Score=133.95 Aligned_cols=104 Identities=15% Similarity=0.095 Sum_probs=74.0
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
.|.||++||.++.... |... ...|+++||.|+++|.||.|..... ......+++++.+.+..|++. ...
T Consensus 47 g~~vvllHG~~~~~~~--w~~~-~~~L~~~g~rvia~Dl~G~G~S~~~------~~~~~y~~~~~a~dl~~ll~~--l~~ 115 (310)
T 1b6g_A 47 EDVFLCLHGEPTWSYL--YRKM-IPVFAESGARVIAPDFFGFGKSDKP------VDEEDYTFEFHRNFLLALIER--LDL 115 (310)
T ss_dssp SCEEEECCCTTCCGGG--GTTT-HHHHHHTTCEEEEECCTTSTTSCEE------SCGGGCCHHHHHHHHHHHHHH--HTC
T ss_pred CCEEEEECCCCCchhh--HHHH-HHHHHhCCCeEEEeCCCCCCCCCCC------CCcCCcCHHHHHHHHHHHHHH--cCC
Confidence 4789999998765543 3333 3445547999999999998764311 001234566666555555544 123
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 618 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
+++.++|||+||.+++.++.++|++++++|+..+.
T Consensus 116 ~~~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~~ 150 (310)
T 1b6g_A 116 RNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAX 150 (310)
T ss_dssp CSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCC
T ss_pred CCEEEEEcChHHHHHHHHHHhChHhheEEEEeccc
Confidence 58999999999999999999999999999987763
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5.7e-10 Score=121.59 Aligned_cols=206 Identities=13% Similarity=0.022 Sum_probs=132.0
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccccee
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFF 213 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 213 (789)
+..+++||||++||.+. |+...+|+|||+++++.+.. +... +
T Consensus 136 ~~~v~fSpDg~~la~as---~~~d~~i~iwd~~~~~~~~~-~~~~--------~-------------------------- 177 (365)
T 4h5i_A 136 TKLVYISREGTVAAIAS---SKVPAIMRIIDPSDLTEKFE-IETR--------G-------------------------- 177 (365)
T ss_dssp EEEEEECTTSSCEEEEE---SCSSCEEEEEETTTTEEEEE-EECS--------S--------------------------
T ss_pred EEEEEEcCCCCEEEEEE---CCCCCEEEEeECCCCcEEEE-eCCC--------C--------------------------
Confidence 56788999999998764 34456899999999876532 2111 0
Q ss_pred eEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEE
Q 003878 214 FFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCW 293 (789)
Q Consensus 214 ~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~ 293 (789)
...+++|||||+.|+....+ .+.+++..++... ...
T Consensus 178 ----------------------~V~~v~fspdg~~l~s~s~~--------------------~~~~~~~~~~~~~--~~~ 213 (365)
T 4h5i_A 178 ----------------------EVKDLHFSTDGKVVAYITGS--------------------SLEVISTVTGSCI--ARK 213 (365)
T ss_dssp ----------------------CCCEEEECTTSSEEEEECSS--------------------CEEEEETTTCCEE--EEE
T ss_pred ----------------------ceEEEEEccCCceEEeccce--------------------eEEEEEeccCcce--eee
Confidence 25789999999999876321 2555665544321 111
Q ss_pred ecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCCE
Q 003878 294 KDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTV 372 (789)
Q Consensus 294 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~~ 372 (789)
....+...+..+.|+|||++++..+.++. ....++.+++...... ......+........ ..|+|||+.
T Consensus 214 ~~~~~~~~v~~v~fspdg~~l~~~s~d~~-~~~~i~~~~~~~~~~~---------~~~~~~~~~~~~~V~~~~~Spdg~~ 283 (365)
T 4h5i_A 214 TDFDKNWSLSKINFIADDTVLIAASLKKG-KGIVLTKISIKSGNTS---------VLRSKQVTNRFKGITSMDVDMKGEL 283 (365)
T ss_dssp CCCCTTEEEEEEEEEETTEEEEEEEESSS-CCEEEEEEEEETTEEE---------EEEEEEEESSCSCEEEEEECTTSCE
T ss_pred ecCCCCCCEEEEEEcCCCCEEEEEecCCc-ceeEEeecccccceec---------ceeeeeecCCCCCeEeEEECCCCCc
Confidence 22233455678999999999988776543 2345777776653100 000111222222222 348999998
Q ss_pred EEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC
Q 003878 373 FTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 373 l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~ 438 (789)
|+.-+. +..|.++|+.+++....+.. .....+..+++++++.++++.+.|+ .|++|++.
T Consensus 284 lasgs~----D~~V~iwd~~~~~~~~~~~~-gH~~~V~~v~fSpdg~~laS~S~D~--tvrvw~ip 342 (365)
T 4h5i_A 284 AVLASN----DNSIALVKLKDLSMSKIFKQ-AHSFAITEVTISPDSTYVASVSAAN--TIHIIKLP 342 (365)
T ss_dssp EEEEET----TSCEEEEETTTTEEEEEETT-SSSSCEEEEEECTTSCEEEEEETTS--EEEEEECC
T ss_pred eEEEcC----CCEEEEEECCCCcEEEEecC-cccCCEEEEEECCCCCEEEEEeCCC--eEEEEEcC
Confidence 886554 35689999988763333332 2235688999999888999999998 68888875
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-10 Score=124.73 Aligned_cols=199 Identities=10% Similarity=0.041 Sum_probs=129.1
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...++|+|||+.|+....+ ..|++|++.++. .+..+. .+...+..+.|+|+++.+++
T Consensus 130 V~~v~~spdg~~l~sgs~d-------------------~~i~iwd~~~~~--~~~~~~--~h~~~V~~~~~~~~~~~~l~ 186 (344)
T 4gqb_B 130 VSTVSVLSSGTQAVSGSKD-------------------ICIKVWDLAQQV--VLSSYR--AHAAQVTCVAASPHKDSVFL 186 (344)
T ss_dssp EEEEEECTTSSEEEEEETT-------------------SCEEEEETTTTE--EEEEEC--CCSSCEEEEEECSSCTTEEE
T ss_pred EEEEEECCCCCEEEEEeCC-------------------CeEEEEECCCCc--EEEEEc--CcCCceEEEEecCCCCCcee
Confidence 5789999999999866433 248899987642 222333 33445678999999987766
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec---cccceeEEEecCCCEEEEEECCCCCCceEEEEECCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID---GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE 393 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~ 393 (789)
+... ...|.++|+.++. +...+.. +.......|+|++..+++.... ++.|..+|+.+
T Consensus 187 s~s~----D~~v~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~---dg~v~~wd~~~ 246 (344)
T 4gqb_B 187 SCSE----DNRILLWDTRCPK-------------PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE---NGTVSLVDTKS 246 (344)
T ss_dssp EEET----TSCEEEEETTSSS-------------CEEECC----CCCEEEEEECSSCTTEEEEEET---TSEEEEEESCC
T ss_pred eecc----ccccccccccccc-------------eeeeeecceeeccceeeeecCCCCcceEEecc---CCcEEEEECCC
Confidence 6543 2448889998742 1112211 1111123478866555444332 46799999988
Q ss_pred CCCeEEeccCCCCceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCC
Q 003878 394 PNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSF 472 (789)
Q Consensus 394 ~~~~~~l~~~~~~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~ 472 (789)
++....+..+. ..+..+.+++++ .++++...|+ .|++||+.+++. ..+..+.+.|..++++|+++.++.+.+.
T Consensus 247 ~~~~~~~~~h~--~~v~~v~fsp~g~~~lasgs~D~--~i~vwd~~~~~~-~~~~~H~~~V~~v~~sp~~~~llas~s~- 320 (344)
T 4gqb_B 247 TSCVLSSAVHS--QCVTGLVFSPHSVPFLASLSEDC--SLAVLDSSLSEL-FRSQAHRDFVRDATWSPLNHSLLTTVGW- 320 (344)
T ss_dssp --CCEEEECCS--SCEEEEEECSSSSCCEEEEETTS--CEEEECTTCCEE-EEECCCSSCEEEEEECSSSTTEEEEEET-
T ss_pred CcEEEEEcCCC--CCEEEEEEccCCCeEEEEEeCCC--eEEEEECCCCcE-EEEcCCCCCEEEEEEeCCCCeEEEEEcC-
Confidence 76455555454 567889998854 6788888887 688999987765 3444456778889999999877665532
Q ss_pred CCCcEEEEEECCCC
Q 003878 473 LIPGIVYQCNLKTE 486 (789)
Q Consensus 473 ~~P~~ly~~dl~tg 486 (789)
-.++..|++.+.
T Consensus 321 --D~~v~~w~v~~~ 332 (344)
T 4gqb_B 321 --DHQVVHHVVPTE 332 (344)
T ss_dssp --TSCEEEEECCC-
T ss_pred --CCeEEEEECCCC
Confidence 357888887665
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5.6e-10 Score=118.12 Aligned_cols=242 Identities=12% Similarity=0.085 Sum_probs=157.3
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.|..+++||||++||-+. ...+|++||++++..+. .+... ..
T Consensus 15 ~V~~~~fsp~~~~l~s~~-----~dg~v~lWd~~~~~~~~-~~~~~----------------------~~---------- 56 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTL-----YSGRVELWNYETQVEVR-SIQVT----------------------ET---------- 56 (304)
T ss_dssp CEEEEEECSSSSEEEEEE-----TTSEEEEEETTTTEEEE-EEECC----------------------SS----------
T ss_pred ceEEEEECCCCCEEEEEc-----CCCcEEEEECCCCceeE-Eeecc----------------------CC----------
Confidence 478899999999998543 23489999999986543 12111 00
Q ss_pred eeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 292 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~ 292 (789)
....++|+||++.|+....+ ..|++|++.++. .+..
T Consensus 57 -----------------------~v~~~~~~~~~~~l~s~s~d-------------------~~i~vwd~~~~~--~~~~ 92 (304)
T 2ynn_A 57 -----------------------PVRAGKFIARKNWIIVGSDD-------------------FRIRVFNYNTGE--KVVD 92 (304)
T ss_dssp -----------------------CEEEEEEEGGGTEEEEEETT-------------------SEEEEEETTTCC--EEEE
T ss_pred -----------------------cEEEEEEeCCCCEEEEECCC-------------------CEEEEEECCCCc--EEEE
Confidence 24678999999998866432 368899987653 2333
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc-cccee-EEEec-C
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FDAQY-EVIAN-D 369 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~-~~~~~-~~~s~-d 369 (789)
+.. +...+..++++|++++|+..+.+ ..|.++|+.++. .......+ ..... ..|+| +
T Consensus 93 ~~~--h~~~v~~~~~~~~~~~l~sgs~D-----~~v~lWd~~~~~-------------~~~~~~~~h~~~v~~v~~~p~~ 152 (304)
T 2ynn_A 93 FEA--HPDYIRSIAVHPTKPYVLSGSDD-----LTVKLWNWENNW-------------ALEQTFEGHEHFVMCVAFNPKD 152 (304)
T ss_dssp EEC--CSSCEEEEEECSSSSEEEEEETT-----SCEEEEEGGGTT-------------EEEEEECCCCSCEEEEEECTTC
T ss_pred EeC--CCCcEEEEEEcCCCCEEEEECCC-----CeEEEEECCCCc-------------chhhhhcccCCcEEEEEECCCC
Confidence 443 34457789999999998765533 348888887631 11122221 11122 34788 4
Q ss_pred CCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec--CCEEEEEEEeCCeEEEEEEECCCCceeeecc
Q 003878 370 DTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN--LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP 447 (789)
Q Consensus 370 G~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~--~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~ 447 (789)
+..|+..+ .+..|..+|+..+.....+.... ...+..+.+.+ ++.++++...++ .|.+||+.+++.+..+.
T Consensus 153 ~~~l~sgs----~D~~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~D~--~i~iWd~~~~~~~~~~~ 225 (304)
T 2ynn_A 153 PSTFASGC----LDRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDL--TIKIWDYQTKSCVATLE 225 (304)
T ss_dssp TTEEEEEE----TTSEEEEEETTCSSCSEEEECCC-TTCEEEEEECCSTTCCEEEEEETTS--EEEEEETTTTEEEEEEE
T ss_pred CCEEEEEe----CCCeEEEEECCCCCccceeccCC-cCcEEEEEEEEcCCCCEEEEEcCCC--eEEEEeCCCCccceeeC
Confidence 56665433 24679999987665223333322 23455566554 456788888887 79999999888767776
Q ss_pred cCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 448 IEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 448 ~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.+...+..+.++|+++.++ +.+ .-+++..||+.+++
T Consensus 226 ~h~~~v~~~~~~p~~~~l~-s~s---~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 226 GHMSNVSFAVFHPTLPIII-SGS---EDGTLKIWNSSTYK 261 (304)
T ss_dssp CCSSCEEEEEECSSSSEEE-EEE---TTSCEEEEETTTCC
T ss_pred CCCCCEEEEEECCCCCEEE-EEc---CCCeEEEEECCCCc
Confidence 6667787888999988554 332 24679999998885
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-10 Score=138.43 Aligned_cols=260 Identities=10% Similarity=-0.034 Sum_probs=160.3
Q ss_pred eCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEe
Q 003878 139 VSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLF 218 (789)
Q Consensus 139 ~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 218 (789)
++|||++++|.....|.+...||+++..+++... +..... .
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--l~d~~~-----------------~-------------------- 115 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKV--LLDPNG-----------------W-------------------- 115 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEE--EECGGG-----------------S--------------------
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEE--EEchHH-----------------h--------------------
Confidence 5699999999998888778899999987774321 111100 0
Q ss_pred eeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC-cEEEEecCC
Q 003878 219 SLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE-DILCWKDPE 297 (789)
Q Consensus 219 ~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~-~~~~~~~~~ 297 (789)
.+.+. | ...+++|||||+.|+|+.... .....+|+++++.++... ...+ +.
T Consensus 116 --a~~~~---~------~~~~~~~SPDG~~la~~~~~~--------------G~~~~~i~v~dl~tg~~~~~~~~---~~ 167 (695)
T 2bkl_A 116 --SKDGT---V------SLGTWAVSWDGKKVAFAQKPN--------------AADEAVLHVIDVDSGEWSKVDVI---EG 167 (695)
T ss_dssp --SSSSC---E------EEEEEEECTTSSEEEEEEEET--------------TCSCCEEEEEETTTCCBCSSCCB---SC
T ss_pred --ccCCC---E------EEEEEEECCCCCEEEEEECCC--------------CCceEEEEEEECCCCCCcCCccc---Cc
Confidence 00000 1 147899999999999997643 234568999999876532 1111 11
Q ss_pred CCeeEEEEEEecCCcEEEEEEEcCC--------CCceEEEEEECCCCCCCcccccccCCCCccEeeeccc----cceeEE
Q 003878 298 HPKYIFSGHVTEDGQYLVMCIEENC--------DPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF----DAQYEV 365 (789)
Q Consensus 298 ~~~~~~~~~~SpDG~~l~~~~~~~~--------~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~ 365 (789)
.. ..+++|||||+.|++.+.+.. ....+||++++.++... ...+.... ......
T Consensus 168 ~~--~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~------------~~lv~~~~~~~~~~~~~~ 233 (695)
T 2bkl_A 168 GK--YATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSK------------DTVVHERTGDPTTFLQSD 233 (695)
T ss_dssp CT--TCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGG------------CEEEECCCCCTTCEEEEE
T ss_pred cc--ccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchh------------ceEEEecCCCCEEEEEEE
Confidence 11 136899999999999886542 12467999999875210 11122211 112245
Q ss_pred EecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeC-CeEEEEEEECCCCce--
Q 003878 366 IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSD-VKYVLQIRDLKNGSL-- 442 (789)
Q Consensus 366 ~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~-g~~~L~~~dl~tG~~-- 442 (789)
|||||+.|++.++.+....+|+.++..+++ ++.+.+... .. ....+.. +.+++....+ ...+|+++++++++.
T Consensus 234 ~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~-~~-~~~~~~~-g~l~~~s~~~~~~~~l~~~d~~~~~~~~ 309 (695)
T 2bkl_A 234 LSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVG-AK-YEVHAWK-DRFYVLTDEGAPRQRVFEVDPAKPARAS 309 (695)
T ss_dssp ECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSS-CC-EEEEEET-TEEEEEECTTCTTCEEEEEBTTBCSGGG
T ss_pred ECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCC-ce-EEEEecC-CcEEEEECCCCCCCEEEEEeCCCCCccC
Confidence 999999999887654346789999876665 677776553 22 3333444 4565554433 245899999987652
Q ss_pred eeecccC--CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 443 LHQLPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 443 ~~~l~~~--~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
.+.+..+ ...+..++++ ++.++++... ..-..++.+++.++
T Consensus 310 ~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~-dg~~~l~~~~~~g~ 352 (695)
T 2bkl_A 310 WKEIVPEDSSASLLSVSIV--GGHLSLEYLK-DATSEVRVATLKGK 352 (695)
T ss_dssp CEEEECCCSSCEEEEEEEE--TTEEEEEEEE-TTEEEEEEEETTCC
T ss_pred CeEEecCCCCCeEEEEEEE--CCEEEEEEEE-CCEEEEEEEeCCCC
Confidence 1333322 4456666665 4556666543 34467888887544
|
| >1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26 | Back alignment and structure |
|---|
Probab=99.31 E-value=5e-12 Score=130.25 Aligned_cols=95 Identities=14% Similarity=0.064 Sum_probs=69.3
Q ss_pred cc-EEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 538 HP-CLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 538 ~P-~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
.| .||++||..+... .|.. ....|. .+|.|+++|.||.|..... ...+++++ ++.+++. .+
T Consensus 12 g~~~vvllHG~~~~~~--~w~~-~~~~L~-~~~~vi~~Dl~G~G~S~~~---------~~~~~~~~---~~~l~~~--l~ 73 (258)
T 1m33_A 12 GNVHLVLLHGWGLNAE--VWRC-IDEELS-SHFTLHLVDLPGFGRSRGF---------GALSLADM---AEAVLQQ--AP 73 (258)
T ss_dssp CSSEEEEECCTTCCGG--GGGG-THHHHH-TTSEEEEECCTTSTTCCSC---------CCCCHHHH---HHHHHTT--SC
T ss_pred CCCeEEEECCCCCChH--HHHH-HHHHhh-cCcEEEEeeCCCCCCCCCC---------CCcCHHHH---HHHHHHH--hC
Confidence 35 8999999765543 3443 345566 7999999999998754321 12345554 3444443 33
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
+++.++|||+||.+++.++.++|++++++|+..+
T Consensus 74 -~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~ 107 (258)
T 1m33_A 74 -DKAIWLGWSLGGLVASQIALTHPERVRALVTVAS 107 (258)
T ss_dssp -SSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred -CCeEEEEECHHHHHHHHHHHHhhHhhceEEEECC
Confidence 7899999999999999999999999999998654
|
| >1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=130.44 Aligned_cols=104 Identities=17% Similarity=0.138 Sum_probs=76.7
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcC--CeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHc
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHL--GAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA 612 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~--G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~ 612 (789)
.+..|.||++||..+... .|.. ....|.++ ||.|+.+|+||.|..... ....++|+.+.+..+++.
T Consensus 33 ~~~~~~vvllHG~~~~~~--~~~~-~~~~L~~~~~g~~vi~~D~~G~G~s~~~---------~~~~~~~~~~~l~~~~~~ 100 (302)
T 1pja_A 33 RASYKPVIVVHGLFDSSY--SFRH-LLEYINETHPGTVVTVLDLFDGRESLRP---------LWEQVQGFREAVVPIMAK 100 (302)
T ss_dssp --CCCCEEEECCTTCCGG--GGHH-HHHHHHHHSTTCCEEECCSSCSGGGGSC---------HHHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEECCCCCChh--HHHH-HHHHHHhcCCCcEEEEeccCCCccchhh---------HHHHHHHHHHHHHHHhhc
Confidence 355688999999766543 3444 34555557 999999999997642111 113567777777777766
Q ss_pred CCCCCCcEEEEeeChHHHHHHHHHHhCCC-ceeEEEecCCcc
Q 003878 613 GYTQSRKLCIEGGSNGGLLVGACINQRPD-LFGCALAHVGVM 653 (789)
Q Consensus 613 ~~~d~~~i~i~G~S~GG~l~~~~~~~~pd-~f~a~v~~~p~~ 653 (789)
. .+++.++|||+||.++..++.++|+ +++++|+..|..
T Consensus 101 ~---~~~~~lvGhS~Gg~ia~~~a~~~p~~~v~~lvl~~~~~ 139 (302)
T 1pja_A 101 A---PQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQ 139 (302)
T ss_dssp C---TTCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCCT
T ss_pred C---CCcEEEEEECHHHHHHHHHHHhcCccccCEEEEECCCc
Confidence 4 4789999999999999999999999 799999887654
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.29 E-value=9e-10 Score=128.71 Aligned_cols=275 Identities=11% Similarity=0.072 Sum_probs=171.7
Q ss_pred EeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceee
Q 003878 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFF 214 (789)
Q Consensus 135 ~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 214 (789)
..+++||||++||++. + .++++||+.+++... .+... .+ -..+....|++
T Consensus 22 ~~~~~spdg~~l~~~~---~---~~v~l~~~~~~~~~~-~~~~h-------~~----~v~~~~~spdg------------ 71 (611)
T 1nr0_A 22 VVLGNTPAGDKIQYCN---G---TSVYTVPVGSLTDTE-IYTEH-------SH----QTTVAKTSPSG------------ 71 (611)
T ss_dssp CCCEECTTSSEEEEEE---T---TEEEEEETTCSSCCE-EECCC-------SS----CEEEEEECTTS------------
T ss_pred eEEeeCCCCCEEEeCC---C---CEEEEecCCCcccCe-EecCC-------CC----ceEEEEECCCC------------
Confidence 4567999999999874 2 279999998775432 11111 11 12223445777
Q ss_pred EEEeeeccccceeeeeeec------------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEEC
Q 003878 215 FYLFSLVKSTIYSFWSVVS------------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFL 282 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~------------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 282 (789)
+++.+++.+|+-.||.+.. .-....++|+|||+.|+...... .....|+.++.
T Consensus 72 ~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~---------------~~~~~v~~wd~ 136 (611)
T 1nr0_A 72 YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR---------------ERFGHVFLFDT 136 (611)
T ss_dssp SEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCS---------------SCSEEEEETTT
T ss_pred cEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCC---------------CceeEEEEeeC
Confidence 4788889999999998732 11246799999999998764321 12235777765
Q ss_pred CCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce
Q 003878 283 GTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ 362 (789)
Q Consensus 283 g~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~ 362 (789)
+.... .+. .+...+..++|+||+++.+++... ...|.++|..++. ....+.......
T Consensus 137 ~~~~~----~l~--gh~~~v~~v~f~p~~~~~l~s~s~----D~~v~lwd~~~~~-------------~~~~l~~H~~~V 193 (611)
T 1nr0_A 137 GTSNG----NLT--GQARAMNSVDFKPSRPFRIISGSD----DNTVAIFEGPPFK-------------FKSTFGEHTKFV 193 (611)
T ss_dssp CCBCB----CCC--CCSSCEEEEEECSSSSCEEEEEET----TSCEEEEETTTBE-------------EEEEECCCSSCE
T ss_pred CCCcc----eec--CCCCCceEEEECCCCCeEEEEEeC----CCeEEEEECCCCe-------------EeeeeccccCce
Confidence 54221 112 234456789999999865444433 2347778876531 112222222222
Q ss_pred e-EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccC-----CCCceeeeEEEecCCEEEEEEEeCCeEEEEEEE
Q 003878 363 Y-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPE-----AERDVLESATAVNLNQMIVSYLSDVKYVLQIRD 436 (789)
Q Consensus 363 ~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~-----~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~d 436 (789)
. ..|+|||+.|+..+. +..|.++|+.+++....+... .....+..+++++++..+++...|+ .|.+||
T Consensus 194 ~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~--~v~lWd 267 (611)
T 1nr0_A 194 HSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK--TIKIWN 267 (611)
T ss_dssp EEEEECTTSSEEEEEET----TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS--EEEEEE
T ss_pred EEEEECCCCCEEEEEEC----CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCC--eEEEEe
Confidence 2 348999997775433 457888998877622333110 1235688999998777888888887 788899
Q ss_pred CCCCceeeecc-------------------------------------------cCCeeEEEeecccCCcEEEEEEcCCC
Q 003878 437 LKNGSLLHQLP-------------------------------------------IEIGSVNAISARREDSVVFISFTSFL 473 (789)
Q Consensus 437 l~tG~~~~~l~-------------------------------------------~~~~~v~~~s~s~d~~~l~~~~ss~~ 473 (789)
+.+++....+. .+...+..++++|+++.++-..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s---- 343 (611)
T 1nr0_A 268 VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSAD---- 343 (611)
T ss_dssp TTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE----
T ss_pred CCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEe----
Confidence 98776433321 1233466778889888665332
Q ss_pred CCcEEEEEECCCCC
Q 003878 474 IPGIVYQCNLKTET 487 (789)
Q Consensus 474 ~P~~ly~~dl~tg~ 487 (789)
.-.++..||+.+++
T Consensus 344 ~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 344 AEGHINSWDISTGI 357 (611)
T ss_dssp TTSCEEEEETTTCC
T ss_pred CCCcEEEEECCCCc
Confidence 23588999998874
|
| >1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 | Back alignment and structure |
|---|
Probab=99.29 E-value=7.1e-11 Score=124.46 Aligned_cols=117 Identities=16% Similarity=0.073 Sum_probs=81.9
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCC
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 595 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~ 595 (789)
.+| .+|.+... +..|.||++||..+... .|.. ....|. ..|.|+++|.||.|..... . .....
T Consensus 16 ~~g-~~l~y~~~--------G~g~~lvllHG~~~~~~--~w~~-~~~~L~-~~~~via~Dl~G~G~S~~~-~---~~~~~ 78 (294)
T 1ehy_A 16 LPD-VKIHYVRE--------GAGPTLLLLHGWPGFWW--EWSK-VIGPLA-EHYDVIVPDLRGFGDSEKP-D---LNDLS 78 (294)
T ss_dssp CSS-CEEEEEEE--------ECSSEEEEECCSSCCGG--GGHH-HHHHHH-TTSEEEEECCTTSTTSCCC-C---TTCGG
T ss_pred ECC-EEEEEEEc--------CCCCEEEEECCCCcchh--hHHH-HHHHHh-hcCEEEecCCCCCCCCCCC-c---ccccc
Confidence 478 78866543 13478999999876543 4444 345566 4599999999998864321 0 00001
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 596 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
..+++++.+.+..+++. ...+++.++|||+||.+++.++.++|++++++|+..+
T Consensus 79 ~~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~ 132 (294)
T 1ehy_A 79 KYSLDKAADDQAALLDA--LGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDP 132 (294)
T ss_dssp GGCHHHHHHHHHHHHHH--TTCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECC
T ss_pred CcCHHHHHHHHHHHHHH--cCCCCEEEEEeChhHHHHHHHHHhChhheeEEEEecC
Confidence 23566666666666655 2335899999999999999999999999999998875
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4.1e-09 Score=121.17 Aligned_cols=288 Identities=11% Similarity=0.062 Sum_probs=165.1
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEc--CCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRI--EDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl--~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
+..+.+||||++|+.+. .. .+|++||+ ++++.+. .+..-.
T Consensus 181 ~~~v~~spdg~~l~v~~-~d----~~V~v~D~~~~t~~~~~-~i~~g~-------------------------------- 222 (543)
T 1nir_A 181 VHISRMSASGRYLLVIG-RD----ARIDMIDLWAKEPTKVA-EIKIGI-------------------------------- 222 (543)
T ss_dssp EEEEEECTTSCEEEEEE-TT----SEEEEEETTSSSCEEEE-EEECCS--------------------------------
T ss_pred cceEEECCCCCEEEEEC-CC----CeEEEEECcCCCCcEEE-EEecCC--------------------------------
Confidence 55788999999986543 22 47999999 7876543 222100
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEe----CCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTH----DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS 287 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wsp----Dg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~ 287 (789)
...+++||| ||+.+|.... .+.+|.+++..+...
T Consensus 223 ------------------------~p~~va~sp~~~~dg~~l~v~~~------------------~~~~v~v~D~~t~~~ 260 (543)
T 1nir_A 223 ------------------------EARSVESSKFKGYEDRYTIAGAY------------------WPPQFAIMDGETLEP 260 (543)
T ss_dssp ------------------------EEEEEEECCSTTCTTTEEEEEEE------------------ESSEEEEEETTTCCE
T ss_pred ------------------------CcceEEeCCCcCCCCCEEEEEEc------------------cCCeEEEEecccccc
Confidence 136889999 9999987643 234577788766432
Q ss_pred CcEEEEecCC--------C-CeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc
Q 003878 288 EDILCWKDPE--------H-PKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG 358 (789)
Q Consensus 288 ~~~~~~~~~~--------~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~ 358 (789)
.. ...... + .....++.+|||++.++++... ...|+++|..+.. ......+..+
T Consensus 261 ~~--~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~----~g~i~vvd~~~~~-----------~l~~~~i~~~ 323 (543)
T 1nir_A 261 KQ--IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE----TGKVLLVNYKDID-----------NLTVTSIGAA 323 (543)
T ss_dssp EE--EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT----TTEEEEEECTTSS-----------SCEEEEEECC
T ss_pred ce--eecccCcccCccccccCCceEEEEECCCCCEEEEEECC----CCeEEEEEecCCC-----------cceeEEeccC
Confidence 22 222100 0 1134578899999988776532 4679999998742 1111111111
Q ss_pred ccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCC-CceeeeEE-EecC-CEEEEEEEeCCeEEEEEE
Q 003878 359 FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAE-RDVLESAT-AVNL-NQMIVSYLSDVKYVLQIR 435 (789)
Q Consensus 359 ~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~-~~~i~~v~-~~~~-~~lv~~~~~~g~~~L~~~ 435 (789)
.......|+|||++|++..+. ...|.++|+++++ ....++-.. ...-.++. .+++ +.++++.. .+...|.+|
T Consensus 324 ~~~~~~~~spdg~~l~va~~~---~~~v~v~D~~tg~-l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~-~~d~~V~v~ 398 (543)
T 1nir_A 324 PFLHDGGWDSSHRYFMTAANN---SNKVAVIDSKDRR-LSALVDVGKTPHPGRGANFVHPKYGPVWSTSH-LGDGSISLI 398 (543)
T ss_dssp SSCCCEEECTTSCEEEEEEGG---GTEEEEEETTTTE-EEEEEECSSSBCCTTCEEEEETTTEEEEEEEB-SSSSEEEEE
T ss_pred cCccCceECCCCCEEEEEecC---CCeEEEEECCCCe-EEEeeccCCCCCCCCCcccCCCCCccEEEecc-CCCceEEEE
Confidence 111224589999988766543 3578889999876 333333110 01101222 2443 45555433 223479999
Q ss_pred ECCC-------CceeeecccCCeeEEEeecccCCcEEEEEEcCCCCC-----cEEEEEECCCCCceEEEeeeccCCCCCC
Q 003878 436 DLKN-------GSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIP-----GIVYQCNLKTETPEMKIFRETIIPGFDR 503 (789)
Q Consensus 436 dl~t-------G~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P-----~~ly~~dl~tg~~~~~~l~~~~~~~~~~ 503 (789)
+.++ ++.++.|..+.+.+..+.++|+++.+++. +...| .+|.++|..+++...+.+.-....++..
T Consensus 399 d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~--~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~ 476 (543)
T 1nir_A 399 GTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVD--TTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGE 476 (543)
T ss_dssp ECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEEC--CTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCS
T ss_pred EeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEe--cCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCC
Confidence 9987 56666776553333356789999988863 22334 4999999998864323332111111111
Q ss_pred CCCcEEEEEEecCCCceEEEEEEE
Q 003878 504 SEFHVHQVFVPSKDGSTKIPMFIV 527 (789)
Q Consensus 504 ~~~~~~~~~~~s~dg~~~i~~~l~ 527 (789)
..-.+.++.| ++|| .++-+.+.
T Consensus 477 ~~~~~~~~~~-~~~g-~~~~~s~~ 498 (543)
T 1nir_A 477 GAKRVVQPEY-NKRG-DEVWFSVW 498 (543)
T ss_dssp SCCEEEEEEE-CSSS-SEEEEEEE
T ss_pred CCCceEeccC-CCCC-CEEEEEee
Confidence 1233455555 4677 66655443
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.27 E-value=5.9e-09 Score=115.44 Aligned_cols=279 Identities=10% Similarity=0.008 Sum_probs=169.5
Q ss_pred EeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceee
Q 003878 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFF 214 (789)
Q Consensus 135 ~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 214 (789)
..+++||+ +.++++...+ .+|++||+.+++.+....... +..+.+. ..+..+.|++
T Consensus 126 ~~~~~s~~-~~~~~~~~~~----~~i~~~d~~~g~~~~~~~~~~---~~~~~~~----v~~~~~~~~~------------ 181 (433)
T 3bws_A 126 KSVRFIDN-TRLAIPLLED----EGMDVLDINSGQTVRLSPPEK---YKKKLGF----VETISIPEHN------------ 181 (433)
T ss_dssp CCCEESSS-SEEEEEBTTS----SSEEEEETTTCCEEEECCCHH---HHTTCCE----EEEEEEGGGT------------
T ss_pred eEEEEeCC-CeEEEEeCCC----CeEEEEECCCCeEeeecCccc---ccccCCc----eeEEEEcCCC------------
Confidence 36789994 4555544322 369999999997653110000 0011110 1111223444
Q ss_pred EEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCC
Q 003878 215 FYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT 284 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~ 284 (789)
++++++..+|...+|.+.. ......++|+|||+.++++... ...|+++++.+
T Consensus 182 ~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------~~~i~~~d~~~ 243 (433)
T 3bws_A 182 ELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWI------------------SEDISVIDRKT 243 (433)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETT------------------TTEEEEEETTT
T ss_pred EEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecC------------------CCcEEEEECCC
Confidence 4667777888888887644 1123578999999999877422 23688999875
Q ss_pred CCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCC---CceEEEEEECCCCCCCcccccccCCCCccEeeec-ccc
Q 003878 285 KQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCD---PVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFD 360 (789)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~---~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~ 360 (789)
.. .+...+. ......+.++|||++|++....... ....|+++|+.+++ ...... ...
T Consensus 244 ~~----~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~--------------~~~~~~~~~~ 304 (433)
T 3bws_A 244 KL----EIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK--------------LIDTIGPPGN 304 (433)
T ss_dssp TE----EEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE--------------EEEEEEEEEC
T ss_pred Cc----EEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc--------------EEeeccCCCC
Confidence 42 2222222 2335688999999999887653321 14679999998742 111111 111
Q ss_pred ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeC-Ce----------
Q 003878 361 AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSD-VK---------- 429 (789)
Q Consensus 361 ~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~-g~---------- 429 (789)
.....|+|+|+.+++.... +..|..+|+.+++ ....++.. ..+..+++++++..++....+ ..
T Consensus 305 ~~~~~~~~~g~~l~~~~~~---~~~v~v~d~~~~~-~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~ 378 (433)
T 3bws_A 305 KRHIVSGNTENKIYVSDMC---CSKIEVYDLKEKK-VQKSIPVF--DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGL 378 (433)
T ss_dssp EEEEEECSSTTEEEEEETT---TTEEEEEETTTTE-EEEEEECS--SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCS
T ss_pred cceEEECCCCCEEEEEecC---CCEEEEEECCCCc-EEEEecCC--CCCCeEEEcCCCCEEEEEecCCCccccccccccc
Confidence 2234589999988877544 4689999998765 33344433 346788999865544444432 21
Q ss_pred --EEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 430 --YVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 430 --~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
..|++||+++++....+.. ...+..+.++++++.++++.. .-..++.|++.
T Consensus 379 ~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~d~~i~v~~~~ 431 (433)
T 3bws_A 379 VLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDF---LDHQIRVYRRD 431 (433)
T ss_dssp SCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEET---TTTEEEEEEET
T ss_pred cceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEEC---CCCeEEEEEec
Confidence 2899999988876555544 334667889999998776532 23577777764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.4e-09 Score=113.06 Aligned_cols=210 Identities=14% Similarity=0.095 Sum_probs=111.5
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC-CcEEEEecCC-C------CeeEEEEEEe
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS-EDILCWKDPE-H------PKYIFSGHVT 308 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~-~~~~~~~~~~-~------~~~~~~~~~S 308 (789)
...++|+|||+.|++.... ...+.++++..... ..+....... . ......+.+|
T Consensus 88 p~~~a~spdg~~l~~~~~~------------------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s 149 (347)
T 3hfq_A 88 PAYVAVDEARQLVYSANYH------------------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT 149 (347)
T ss_dssp CSEEEEETTTTEEEEEETT------------------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC
T ss_pred CEEEEECCCCCEEEEEeCC------------------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC
Confidence 4679999999999887532 23466777643221 1111111110 0 1124568999
Q ss_pred cCCcEEEEEEEcCCCCceEEEEEECC-CCCCCcccccccCCCCccEeee--ccccceeEEEecCCCEEEEEECCCCCCce
Q 003878 309 EDGQYLVMCIEENCDPVNKVYYCDLS-ALPEGLEGFKKRDGLLPFVKLI--DGFDAQYEVIANDDTVFTFLTNKDAPKYK 385 (789)
Q Consensus 309 pDG~~l~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~s~dG~~l~~~tn~~~~~~~ 385 (789)
|||+ +++.. .. ...|++++++ ++. ........ .+.......|+|||+.+|+....+ ..
T Consensus 150 pdg~-l~v~~-~~---~~~v~~~~~~~~g~-----------~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~---~~ 210 (347)
T 3hfq_A 150 PDNR-LAVID-LG---SDKVYVYNVSDAGQ-----------LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELS---SQ 210 (347)
T ss_dssp TTSC-EEEEE-TT---TTEEEEEEECTTSC-----------EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT---TE
T ss_pred CCCc-EEEEe-CC---CCEEEEEEECCCCc-----------EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCC---CE
Confidence 9999 55443 22 3568888887 321 00011111 111222345899999888765543 34
Q ss_pred EEEEECC--CCCCeEE---eccCCC----CceeeeEEEecCCE-EEEEEEeCCeEEEEEEECC-CCce--eeecccCCee
Q 003878 386 IIRVDLK--EPNDWFE---VIPEAE----RDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLK-NGSL--LHQLPIEIGS 452 (789)
Q Consensus 386 L~~~dl~--~~~~~~~---l~~~~~----~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl~-tG~~--~~~l~~~~~~ 452 (789)
|.+++++ +++ ++. +..... ......++++++++ +++....++ .|.+|+++ +|.. +..+......
T Consensus 211 v~v~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~--~v~v~~~~~~g~~~~~~~~~~~~~~ 287 (347)
T 3hfq_A 211 IASLKYDTQTGA-FTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYN--TLAVFAVTADGHLTLIQQISTEGDF 287 (347)
T ss_dssp EEEEEEETTTTE-EEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTT--EEEEEEECGGGCEEEEEEEECSSSC
T ss_pred EEEEEecCCCCc-eEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCC--EEEEEEECCCCcEEEeEEEecCCCC
Confidence 5555544 343 221 111111 13466788998654 556555454 67778875 2322 2222222223
Q ss_pred EEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 453 VNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 453 v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+..++++||++.++++-.. ...-.+|.+|.++|+
T Consensus 288 ~~~~~~spdg~~l~v~~~~-~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 288 PRDFDLDPTEAFVVVVNQN-TDNATLYARDLTSGK 321 (347)
T ss_dssp CCEEEECTTSSEEEEEETT-TTEEEEEEECTTTCC
T ss_pred cCeEEECCCCCEEEEEEcC-CCcEEEEEEeCCCCe
Confidence 4567889999987765432 233345555777785
|
| >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.3e-12 Score=128.77 Aligned_cols=116 Identities=13% Similarity=0.021 Sum_probs=84.5
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCc
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQ 596 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~ 596 (789)
+| .+|.+...-+ ...|+||++||..+.... |.. ....|. ++|.|+++|+||.|..... ...
T Consensus 7 ~g-~~l~~~~~g~------~~~~~vv~lHG~~~~~~~--~~~-~~~~L~-~~~~v~~~D~~G~G~S~~~--------~~~ 67 (264)
T 3ibt_A 7 NG-TLMTYSESGD------PHAPTLFLLSGWCQDHRL--FKN-LAPLLA-RDFHVICPDWRGHDAKQTD--------SGD 67 (264)
T ss_dssp TT-EECCEEEESC------SSSCEEEEECCTTCCGGG--GTT-HHHHHT-TTSEEEEECCTTCSTTCCC--------CSC
T ss_pred CC-eEEEEEEeCC------CCCCeEEEEcCCCCcHhH--HHH-HHHHHH-hcCcEEEEccccCCCCCCC--------ccc
Confidence 67 7776544322 235899999998766533 443 345666 6799999999998764321 233
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-CCceeEEEecCCcc
Q 003878 597 NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR-PDLFGCALAHVGVM 653 (789)
Q Consensus 597 ~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-pd~f~a~v~~~p~~ 653 (789)
.+++++.+.+..+++. .+.+++.++|||+||.+++.++.++ |++++++|+..|..
T Consensus 68 ~~~~~~~~~~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~ 123 (264)
T 3ibt_A 68 FDSQTLAQDLLAFIDA--KGIRDFQMVSTSHGCWVNIDVCEQLGAARLPKTIIIDWLL 123 (264)
T ss_dssp CCHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHSCTTTSCEEEEESCCS
T ss_pred cCHHHHHHHHHHHHHh--cCCCceEEEecchhHHHHHHHHHhhChhhhheEEEecCCC
Confidence 4566776666666654 2345899999999999999999999 99999999988765
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-09 Score=113.36 Aligned_cols=250 Identities=10% Similarity=0.037 Sum_probs=146.8
Q ss_pred eEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeE
Q 003878 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFF 215 (789)
Q Consensus 136 ~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 215 (789)
.+++||||++|+++....+ +|+++|+++++.....+....
T Consensus 44 ~~~~s~dg~~l~~~~~~~~----~i~~~d~~~~~~~~~~~~~~~------------------------------------ 83 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQ----TLVQIETQLEPPKVVAIQEGQ------------------------------------ 83 (331)
T ss_dssp EEEECSSSCEEEEEESTTC----EEEEEECSSSSCEEEEEEECS------------------------------------
T ss_pred eEEEcCCCCEEEEEeCCCC----eEEEEECCCCceeEEecccCC------------------------------------
Confidence 8899999998776554233 899999999875211111110
Q ss_pred EEeeeccccceeeeeeecccccce-EEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEe
Q 003878 216 YLFSLVKSTIYSFWSVVSQFKFSS-IAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK 294 (789)
Q Consensus 216 ~~~~s~~~g~~~l~~~~~~~~~~~-~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~ 294 (789)
.... ++|+|||+.|+ .... ......|+++++.+... +..+.
T Consensus 84 --------------------~~~~~~~~s~dg~~l~-~~~~---------------~~~~~~i~v~d~~~~~~--~~~~~ 125 (331)
T 3u4y_A 84 --------------------SSMADVDITPDDQFAV-TVTG---------------LNHPFNMQSYSFLKNKF--ISTIP 125 (331)
T ss_dssp --------------------SCCCCEEECTTSSEEE-ECCC---------------SSSSCEEEEEETTTTEE--EEEEE
T ss_pred --------------------CCccceEECCCCCEEE-EecC---------------CCCcccEEEEECCCCCe--EEEEE
Confidence 1244 99999999998 4211 11223799999876532 22233
Q ss_pred cCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEE
Q 003878 295 DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFT 374 (789)
Q Consensus 295 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~ 374 (789)
.... ...+.|||||++|++...... ..++++++.... ... ......+..+.......|+|||+.+|
T Consensus 126 ~~~~---~~~~~~spdg~~l~~~~~~~~---~~i~~~~~~~~g-~~~-------~~~~~~~~~~~~~~~~~~spdg~~l~ 191 (331)
T 3u4y_A 126 IPYD---AVGIAISPNGNGLILIDRSSA---NTVRRFKIDADG-VLF-------DTGQEFISGGTRPFNITFTPDGNFAF 191 (331)
T ss_dssp CCTT---EEEEEECTTSSCEEEEEETTT---TEEEEEEECTTC-CEE-------EEEEEEECSSSSEEEEEECTTSSEEE
T ss_pred CCCC---ccceEECCCCCEEEEEecCCC---ceEEEEEECCCC-cEe-------ecCCccccCCCCccceEECCCCCEEE
Confidence 3222 357899999999877654322 226666665421 000 00001111122223345899999888
Q ss_pred EEECCCCCCceEEEEECCCCCCe--EEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce--eeecc---
Q 003878 375 FLTNKDAPKYKIIRVDLKEPNDW--FEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL--LHQLP--- 447 (789)
Q Consensus 375 ~~tn~~~~~~~L~~~dl~~~~~~--~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~--~~~l~--- 447 (789)
+.... ...|..+|+++++.. ...++.. .....+.+++++..++.... +...|++||+++|+. +..+.
T Consensus 192 v~~~~---~~~v~v~d~~~~~~~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~-~~~~i~~~d~~~~~~~~~~~~~~~~ 265 (331)
T 3u4y_A 192 VANLI---GNSIGILETQNPENITLLNAVGTN--NLPGTIVVSRDGSTVYVLTE-STVDVFNFNQLSGTLSFVKSFGHGL 265 (331)
T ss_dssp EEETT---TTEEEEEECSSTTSCEEEEEEECS--SCCCCEEECTTSSEEEEECS-SEEEEEEEETTTTEEEEEEEEECCC
T ss_pred EEeCC---CCeEEEEECCCCcccceeeeccCC--CCCceEEECCCCCEEEEEEc-CCCEEEEEECCCCceeeeccccccc
Confidence 76643 367999999887630 2233332 34567888886553333322 345799999988765 11111
Q ss_pred -cC---CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 448 -IE---IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 448 -~~---~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
.. ......+.+++|++.++++.. .-..+..||+.+.
T Consensus 266 ~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 266 LIDPRPLFGANQMALNKTETKLFISAN---ISRELKVFTISGK 305 (331)
T ss_dssp CCCCGGGTTCCCEEECTTSSEEEEEET---TTTEEEEEETTSC
T ss_pred ccCCCCcccccceEECCCCCEEEEecC---CCCcEEEEEecCC
Confidence 11 111134678899998877643 3468999998765
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-10 Score=128.50 Aligned_cols=291 Identities=11% Similarity=0.011 Sum_probs=171.5
Q ss_pred EEEeEEeCCCCcEEEEEEecCC------ceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccc
Q 003878 133 ALIKVSVSEDAKYLAYALSYSG------SDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFL 206 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g------~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 206 (789)
.+..++|||||+.++++.+..| +....|++||+.++..... +... .|. +- ..+..+.|++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-~~~~----~~~-~~----v~~~~~s~~~---- 79 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-IASL----QVD-SK----FNDLDWSHNN---- 79 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-SCCC----CCS-SC----EEEEEECSSS----
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-EEEE----ecC-Cc----eEEEEECCCC----
Confidence 3556889999985444444444 5667899999998853210 0000 000 00 1122334565
Q ss_pred ccccceeeEEEeeeccccceeeeeeec--------------ccccceEEEEeC-CcEEEEEEccCCCCCCCCCCCccccC
Q 003878 207 YLRGIFFFFYLFSLVKSTIYSFWSVVS--------------QFKFSSIAWTHD-SKGFFYSRYPAPKEGKDMDAGTETDS 271 (789)
Q Consensus 207 ~~~~~~~~~~~~~s~~~g~~~l~~~~~--------------~~~~~~~~wspD-g~~i~y~~~~~~~~~~~~~~~~~~~~ 271 (789)
.+++++..+|...||.+.. .-....++|+|| ++.|+....
T Consensus 80 --------~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----------------- 134 (416)
T 2pm9_A 80 --------KIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN----------------- 134 (416)
T ss_dssp --------SCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS-----------------
T ss_pred --------CeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC-----------------
Confidence 3567777888999997754 112467899999 565554322
Q ss_pred CcccEEEEEECCCCCC-----CcEEEEecCCCCeeEEEEEEecCC-cEEEEEEEcCCCCceEEEEEECCCCCCCcccccc
Q 003878 272 NLYHEFYYHFLGTKQS-----EDILCWKDPEHPKYIFSGHVTEDG-QYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 345 (789)
Q Consensus 272 ~~~~~i~~~~lg~~~~-----~~~~~~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 345 (789)
...|++|++.+... ....+.....+...+..+.|+|++ ..++.... ...|.++|+.++.
T Consensus 135 --dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg~v~iwd~~~~~-------- 199 (416)
T 2pm9_A 135 --NGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGS-----SNFASIWDLKAKK-------- 199 (416)
T ss_dssp --SSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESS-----SSCEEEEETTTTE--------
T ss_pred --CCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcC-----CCCEEEEECCCCC--------
Confidence 23478888876541 111110111223335678999995 55544322 3458899998742
Q ss_pred cCCCCccEeeecc-------ccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec-C
Q 003878 346 RDGLLPFVKLIDG-------FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN-L 417 (789)
Q Consensus 346 ~~~~~~~~~l~~~-------~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~-~ 417 (789)
....+... .......|+|+|..+++....++....|..+|+.++......+.......+..+.+++ +
T Consensus 200 -----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 274 (416)
T 2pm9_A 200 -----EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQD 274 (416)
T ss_dssp -----EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSC
T ss_pred -----cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCC
Confidence 11111111 1112234899985444444443333478889998753122222201235678899987 6
Q ss_pred CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 418 NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 418 ~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+.++++...++ .|++||+.+++.+..+..+...+..+.++|++..++++.+ .-+.+..||+.+++
T Consensus 275 ~~~l~s~~~dg--~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~---~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 275 EHLLLSSGRDN--TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS---FDNKIEVQTLQNLT 339 (416)
T ss_dssp SSCEEEEESSS--EEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECC---SSSEEEEEESCCCC
T ss_pred CCeEEEEeCCC--CEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEe---cCCcEEEEEccCCC
Confidence 77888888887 6999999988876666655566667889999844444432 35789999987763
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.25 E-value=5.3e-09 Score=110.90 Aligned_cols=218 Identities=9% Similarity=0.011 Sum_probs=143.7
Q ss_pred EEeeeccccceeeeeeec---------------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEE
Q 003878 216 YLFSLVKSTIYSFWSVVS---------------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYH 280 (789)
Q Consensus 216 ~~~~s~~~g~~~l~~~~~---------------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (789)
+++.+. +|...+|.+.. ......++|+||++.|+....+ ..|+++
T Consensus 65 ~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------------~~i~~~ 124 (337)
T 1gxr_A 65 HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA-------------------STLSIW 124 (337)
T ss_dssp EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS-------------------SEEEEE
T ss_pred EEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCC-------------------CcEEEE
Confidence 455555 89999998754 1123578999999998876432 358888
Q ss_pred ECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc
Q 003878 281 FLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD 360 (789)
Q Consensus 281 ~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 360 (789)
++.+........+.. +...+..+.|+|||++++....+ ..|+++|+.++. ....+.....
T Consensus 125 d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d-----g~v~~~d~~~~~-------------~~~~~~~~~~ 184 (337)
T 1gxr_A 125 DLAAPTPRIKAELTS--SAPACYALAISPDSKVCFSCCSD-----GNIAVWDLHNQT-------------LVRQFQGHTD 184 (337)
T ss_dssp ECCCC--EEEEEEEC--SSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTE-------------EEEEECCCSS
T ss_pred ECCCCCcceeeeccc--CCCceEEEEECCCCCEEEEEeCC-----CcEEEEeCCCCc-------------eeeeeecccC
Confidence 987654322223332 23345688999999999876543 348899988742 1122211111
Q ss_pred c-eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCC
Q 003878 361 A-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN 439 (789)
Q Consensus 361 ~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~t 439 (789)
. ....|+|+|+.|+..+. ++.|..+|+.+++ ....+... ..+..+.+++++.+++....++ .|++|++.+
T Consensus 185 ~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~-~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~--~i~~~~~~~ 255 (337)
T 1gxr_A 185 GASCIDISNDGTKLWTGGL----DNTVRSWDLREGR-QLQQHDFT--SQIFSLGYCPTGEWLAVGMESS--NVEVLHVNK 255 (337)
T ss_dssp CEEEEEECTTSSEEEEEET----TSEEEEEETTTTE-EEEEEECS--SCEEEEEECTTSSEEEEEETTS--CEEEEETTS
T ss_pred ceEEEEECCCCCEEEEEec----CCcEEEEECCCCc-eEeeecCC--CceEEEEECCCCCEEEEEcCCC--cEEEEECCC
Confidence 1 22348999988886553 4679999998875 22223332 4577889988767777777776 688999986
Q ss_pred CceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 440 GSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 440 G~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
++. ..+......+..+.++++++.++... .-+.++.||+.+++
T Consensus 256 ~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 256 PDK-YQLHLHESCVLSLKFAYCGKWFVSTG----KDNLLNAWRTPYGA 298 (337)
T ss_dssp SCE-EEECCCSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTCC
T ss_pred CCe-EEEcCCccceeEEEECCCCCEEEEec----CCCcEEEEECCCCe
Confidence 665 44544566678889999998766433 24689999998885
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.24 E-value=7.2e-10 Score=117.83 Aligned_cols=254 Identities=12% Similarity=-0.005 Sum_probs=149.6
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccccee
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFF 213 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 213 (789)
...+++||||++|+++.... .+|+++|+.+++.+.. +..... . ..+.
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~----~~v~~~d~~~~~~~~~-~~~~~~-----------------~-~~~~---------- 82 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKS----ESLVKIDLVTGETLGR-IDLSTP-----------------E-ERVK---------- 82 (337)
T ss_dssp CCCEEECTTSSEEEEEETTT----TEEEEEETTTCCEEEE-EECCBT-----------------T-EEEE----------
T ss_pred ccceEEcCCCCEEEEEeCCC----CeEEEEECCCCCeEee-EEcCCc-----------------c-cccc----------
Confidence 35688999999987765433 3699999999876531 111000 0 0000
Q ss_pred eEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCC--cccEEEEEECCCCCCCcEE
Q 003878 214 FFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN--LYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 214 ~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~lg~~~~~~~~ 291 (789)
....++|+|||+.|++....... ..+.. ....|+++++.+... +.
T Consensus 83 ----------------------~~~~~~~s~dg~~l~~~~~~~~~---------~~~~~~~~~~~i~v~d~~~~~~--~~ 129 (337)
T 1pby_B 83 ----------------------SLFGAALSPDGKTLAIYESPVRL---------ELTHFEVQPTRVALYDAETLSR--RK 129 (337)
T ss_dssp ----------------------CTTCEEECTTSSEEEEEEEEEEE---------CSSCEEECCCEEEEEETTTTEE--EE
T ss_pred ----------------------cccceEECCCCCEEEEEeccccc---------ccccccccCceEEEEECCCCcE--EE
Confidence 13679999999999887421100 00011 246799999865432 22
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCC
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDT 371 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~ 371 (789)
.+..... ...+.|||||++|++. + ..|+++|++++. ....+..+.......|+|||+
T Consensus 130 ~~~~~~~---~~~~~~s~dg~~l~~~--~-----~~i~~~d~~~~~-------------~~~~~~~~~~~~~~~~s~dg~ 186 (337)
T 1pby_B 130 AFEAPRQ---ITMLAWARDGSKLYGL--G-----RDLHVMDPEAGT-------------LVEDKPIQSWEAETYAQPDVL 186 (337)
T ss_dssp EEECCSS---CCCEEECTTSSCEEEE--S-----SSEEEEETTTTE-------------EEEEECSTTTTTTTBCCCBCC
T ss_pred EEeCCCC---cceeEECCCCCEEEEe--C-----CeEEEEECCCCc-------------EeeeeeccccCCCceeCCCcc
Confidence 2332222 2357899999999876 1 348999998742 111111111001124688888
Q ss_pred EEEEEECCCCCC---------------------ceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeE
Q 003878 372 VFTFLTNKDAPK---------------------YKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKY 430 (789)
Q Consensus 372 ~l~~~tn~~~~~---------------------~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~ 430 (789)
.+++....+ .. ..|+.+|+++++ ...+..........++.+++++..++.. + .
T Consensus 187 ~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~--~ 260 (337)
T 1pby_B 187 AVWNQHESS-GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE-MAMREVRIMDVFYFSTAVNPAKTRAFGA--Y--N 260 (337)
T ss_dssp CCCCCCTTT-TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC-EEEEEEEECSSCEEEEEECTTSSEEEEE--E--S
T ss_pred EEeeeccCC-CceeeeeeccccccccccccccccceEEEeCCCCC-ceEeecCCCCCceeeEEECCCCCEEEEe--C--C
Confidence 776543221 11 168899998876 2221111112345678888865444444 2 4
Q ss_pred EEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 431 VLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 431 ~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.|++||+++++....+..+. .+..+.++++++.+++. + ....++.||+.+++
T Consensus 261 ~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~--~--~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 261 VLESFDLEKNASIKRVPLPH-SYYSVNVSTDGSTVWLG--G--ALGDLAAYDAETLE 312 (337)
T ss_dssp EEEEEETTTTEEEEEEECSS-CCCEEEECTTSCEEEEE--S--BSSEEEEEETTTCC
T ss_pred eEEEEECCCCcCcceecCCC-ceeeEEECCCCCEEEEE--c--CCCcEEEEECcCCc
Confidence 89999999887655555442 23467789999987765 2 25789999999886
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.9e-09 Score=108.72 Aligned_cols=264 Identities=13% Similarity=0.134 Sum_probs=167.0
Q ss_pred CceEeCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCc---------
Q 003878 85 APFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGS--------- 155 (789)
Q Consensus 85 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~--------- 155 (789)
....+|+++||.... . ...||+.+..+...+.|.|-. .--+++||++|.|+....+.
T Consensus 20 ~~~~~g~~iy~~n~~-d--~~~ly~~~~dg~~~~~l~~~~-----------~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~ 85 (302)
T 3s25_A 20 LFCESDGEVFFSNTN-D--NGRLYAMNIDGSNIHKLSNDT-----------AMYINADKNYVYYVRNNNQKITSQTFFSY 85 (302)
T ss_dssp CEEEETTEEEEEEGG-G--TTEEEEEETTSCSCEEEEEEE-----------EEEEEECSSEEEEEEECC------CCSSC
T ss_pred EEEEeCCEEEEEeCC-C--CceEEEEcCCCCCCEEccCCc-----------eeeEEEcCCEEEEEECCCCcccccceecc
Confidence 345789999886543 2 245999886444445554421 12368999999999765432
Q ss_pred eEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeeccc
Q 003878 156 DWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQF 235 (789)
Q Consensus 156 ~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~ 235 (789)
....|+.+++.+++... +..
T Consensus 86 n~~~Iy~i~~dg~~~~~--l~~---------------------------------------------------------- 105 (302)
T 3s25_A 86 DRNSLCRIKRNGHGSTV--LDP---------------------------------------------------------- 105 (302)
T ss_dssp CSEEEEEEETTSCCCEE--EEC----------------------------------------------------------
T ss_pred CCCeEEEEeCCCCcceE--eec----------------------------------------------------------
Confidence 25789999999885432 222
Q ss_pred ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 236 ~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
....+|+++|+.|||+... ......|++.++..... ..+..... ..++++|++|+
T Consensus 106 -~~~~~~s~~g~~Iy~~~~~---------------~~~~~~Iy~~~~dGs~~--~~lt~~~~-------~~~~~~g~~iy 160 (302)
T 3s25_A 106 -DPCIYASLIGNYIYYLHYD---------------TQTATSLYRIRIDGEEK--KKIKNHYL-------FTCNTSDRYFY 160 (302)
T ss_dssp -SCEEEEEEETTEEEEEEES---------------SSSCEEEEEEETTSCCC--EEEESSCC-------CCSEEETTEEE
T ss_pred -CCccEEEEeCCEEEEEeec---------------CCCCceEEEEECCCCCe--EEEeCCCc-------eEeeEECCEEE
Confidence 2345789999999998521 12345699999976443 33433221 34688999999
Q ss_pred EEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
++.. + ...||+++++++. .+.+..+. ....+.|+|+.||+....+ .++|+++++++..
T Consensus 161 ~t~~-g---~~~Iy~~~l~g~~--------------~~~l~~~~--~~~~~~P~g~~iy~t~~~~--~~~I~~~~ldG~~ 218 (302)
T 3s25_A 161 YNNP-K---NGQLYRYDTASQS--------------EALFYDCN--CYKPVVLDDTNVYYMDVNR--DNAIVHVNINNPN 218 (302)
T ss_dssp EECT-T---TCCEEEEETTTTE--------------EEEEECSC--EEEEEEEETTEEEEEEGGG--TTEEEEECSSSCC
T ss_pred EEeC-C---CceEEEEECCCCC--------------EEEEeCCC--ccceeeecCCEEEEEEcCC--CcEEEEEECCCCC
Confidence 8754 2 4569999998742 22333321 2223568999999976543 3799999999876
Q ss_pred CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCC
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIP 475 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P 475 (789)
.+.|+. . .+..+++.. ++|++..... ...|+.++++ |...++|.... +. +.+..++.|+++- +...
T Consensus 219 -~~~Lt~-~---~~~~~~~~g-~~Iy~~~~~~-~~~i~~~~~D-G~~r~~l~~~~--~~--~i~i~~d~Iy~td--~~~~ 284 (302)
T 3s25_A 219 -PVVLTE-A---NIEHYNVYG-SLIFYQRGGD-NPALCVVKND-GTGFKELAKGE--FC--NINVTSQYVYFTD--FVSN 284 (302)
T ss_dssp -CEECSC-S---CEEEEEEET-TEEEEEECSS-SCEEEEEETT-SCCCEEEEESC--EE--EEEECSSEEEEEE--TTTC
T ss_pred -eEEEeC-C---CcceEEECC-CEEEEEECCC-CcEEEEEECC-CCccEEeeCCc--cc--eEEEeCCEEEEEE--CCCC
Confidence 344442 2 245567665 7887654433 3789999998 65445665432 22 3345678888764 2222
Q ss_pred cEEEEEECC
Q 003878 476 GIVYQCNLK 484 (789)
Q Consensus 476 ~~ly~~dl~ 484 (789)
.+++.+++
T Consensus 285 -~i~~~~~d 292 (302)
T 3s25_A 285 -KEYCTSTQ 292 (302)
T ss_dssp -CEEEEESS
T ss_pred -eEEEEECC
Confidence 48888764
|
| >2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A | Back alignment and structure |
|---|
Probab=99.24 E-value=7e-11 Score=126.21 Aligned_cols=116 Identities=12% Similarity=0.060 Sum_probs=82.1
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCC
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 595 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~ 595 (789)
.+| .+|.+.. .+ .++.|.||++||..+.... |.. ....|. ..|.|+++|.||.|..... ...
T Consensus 28 ~~g-~~l~y~~---~G---~g~~~~vvllHG~~~~~~~--w~~-~~~~L~-~~~~via~Dl~GhG~S~~~-------~~~ 89 (318)
T 2psd_A 28 VLD-SFINYYD---SE---KHAENAVIFLHGNATSSYL--WRH-VVPHIE-PVARCIIPDLIGMGKSGKS-------GNG 89 (318)
T ss_dssp ETT-EEEEEEE---CC---SCTTSEEEEECCTTCCGGG--GTT-TGGGTT-TTSEEEEECCTTSTTCCCC-------TTS
T ss_pred eCC-eEEEEEE---cC---CCCCCeEEEECCCCCcHHH--HHH-HHHHhh-hcCeEEEEeCCCCCCCCCC-------CCC
Confidence 478 7775543 22 2344689999998765433 332 234455 5679999999998864321 112
Q ss_pred cchHHHHHHHHHHHHHcCCCCC-CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 596 QNCFDDFISASEYLISAGYTQS-RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~-~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
..+++++.+.+..+++. .+. +++.++|||+||.+++.++.++|++++++|+..+
T Consensus 90 ~~~~~~~a~dl~~ll~~--l~~~~~~~lvGhSmGg~ia~~~A~~~P~~v~~lvl~~~ 144 (318)
T 2psd_A 90 SYRLLDHYKYLTAWFEL--LNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMES 144 (318)
T ss_dssp CCSHHHHHHHHHHHHTT--SCCCSSEEEEEEEHHHHHHHHHHHHCTTSEEEEEEEEE
T ss_pred ccCHHHHHHHHHHHHHh--cCCCCCeEEEEEChhHHHHHHHHHhChHhhheEEEecc
Confidence 24577777777777765 334 6899999999999999999999999999998654
|
| >3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-12 Score=134.18 Aligned_cols=103 Identities=14% Similarity=0.111 Sum_probs=75.0
Q ss_pred ccEEEEEcC-CCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 538 HPCLLYGYG-GFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 538 ~P~ll~~hG-g~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
.|+||++|| |... ....|.. ....|. +||.|+++|+||.|... .......+++|+.+.+..+++.- .
T Consensus 41 ~p~vv~lHG~G~~~-~~~~~~~-~~~~L~-~~~~vi~~D~~G~G~S~-------~~~~~~~~~~~~~~~l~~~l~~~--~ 108 (292)
T 3l80_A 41 NPCFVFLSGAGFFS-TADNFAN-IIDKLP-DSIGILTIDAPNSGYSP-------VSNQANVGLRDWVNAILMIFEHF--K 108 (292)
T ss_dssp SSEEEEECCSSSCC-HHHHTHH-HHTTSC-TTSEEEEECCTTSTTSC-------CCCCTTCCHHHHHHHHHHHHHHS--C
T ss_pred CCEEEEEcCCCCCc-HHHHHHH-HHHHHh-hcCeEEEEcCCCCCCCC-------CCCcccccHHHHHHHHHHHHHHh--C
Confidence 389999997 2221 1123333 345555 79999999999987543 11223456788877777777652 3
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
.+++.++|||+||.+++.++.++|++++++|+..|.
T Consensus 109 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 144 (292)
T 3l80_A 109 FQSYLLCVHSIGGFAALQIMNQSSKACLGFIGLEPT 144 (292)
T ss_dssp CSEEEEEEETTHHHHHHHHHHHCSSEEEEEEEESCC
T ss_pred CCCeEEEEEchhHHHHHHHHHhCchheeeEEEECCC
Confidence 358999999999999999999999999999998843
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-09 Score=125.73 Aligned_cols=264 Identities=13% Similarity=0.086 Sum_probs=166.1
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..+..+++||||++|+.+.. ..+|++||+.++.... +... .+- ..+....|+++
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~-----d~~i~~w~~~~~~~~~--~~~~-------~~~----v~~~~~s~~g~-------- 357 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASD-----DKTVKLWNRNGQHLQT--LTGH-------SSS----VWGVAFSPDGQ-------- 357 (577)
T ss_dssp SCEEEEEECTTSSEEEEEET-----TSCEEEEETTSCEEEE--ECCC-------SSC----EEEEEECTTSS--------
T ss_pred CCeEEEEECCCCCEEEEEeC-----CCeEEEEeCCCCeeEE--EeCC-------CCC----EEEEEECCCCC--------
Confidence 34677899999999985432 2369999987764332 1110 000 01122345653
Q ss_pred eeeEEEeeeccccceeeeeeec---------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEEC
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVS---------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFL 282 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~---------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 282 (789)
.+.++..+|...+|.... ......++|+|||+.|+....+ ..|++++.
T Consensus 358 ----~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d-------------------~~v~~~~~ 414 (577)
T 2ymu_A 358 ----TIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD-------------------KTVKLWNR 414 (577)
T ss_dssp ----EEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETT-------------------SEEEEECT
T ss_pred ----EEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCC-------------------CEEEEEeC
Confidence 566777888888887543 2224578999999998866432 34777775
Q ss_pred CCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce
Q 003878 283 GTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ 362 (789)
Q Consensus 283 g~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~ 362 (789)
.. +....+.. +...+..+++|||+++|+.... ...|.+++.... ....+.......
T Consensus 415 ~~---~~~~~~~~--~~~~v~~~~~s~d~~~l~~~~~-----d~~v~~w~~~~~--------------~~~~~~~~~~~v 470 (577)
T 2ymu_A 415 NG---QLLQTLTG--HSSSVWGVAFSPDDQTIASASD-----DKTVKLWNRNGQ--------------LLQTLTGHSSSV 470 (577)
T ss_dssp TC---CEEEEEEC--CSSCEEEEEECTTSSEEEEEET-----TSEEEEEETTSC--------------EEEEEECCSSCE
T ss_pred CC---CEEEEecC--CCCCeEEEEECCCCCEEEEEcC-----CCEEEEEECCCC--------------EEEEEcCCCCCE
Confidence 32 21222232 2334668899999999987653 245788886541 122222222222
Q ss_pred -eEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCc
Q 003878 363 -YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGS 441 (789)
Q Consensus 363 -~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~ 441 (789)
-..|+|||+.|+..+. +..|..++..+.. .+.+..+. ..+..+++++++.++++...++ .|++||.. |+
T Consensus 471 ~~~~~spd~~~las~~~----d~~i~iw~~~~~~-~~~~~~h~--~~v~~l~~s~dg~~l~s~~~dg--~v~lwd~~-~~ 540 (577)
T 2ymu_A 471 RGVAFSPDGQTIASASD----DKTVKLWNRNGQL-LQTLTGHS--SSVRGVAFSPDGQTIASASDDK--TVKLWNRN-GQ 540 (577)
T ss_dssp EEEEECTTSCEEEEEET----TSEEEEEETTSCE-EEEEECCS--SCEEEEEECTTSSCEEEEETTS--EEEEECTT-SC
T ss_pred EEEEEcCCCCEEEEEeC----CCEEEEEcCCCCE-EEEEeCCC--CCEEEEEEcCCCCEEEEEECcC--EEEEEeCC-CC
Confidence 2348999998775443 3578888965432 44554444 5678899998778888888887 68899975 77
Q ss_pred eeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEE
Q 003878 442 LLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 442 ~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~d 482 (789)
.+..+..+.+.|..+.++||++.|+ +.+. -..+..||
T Consensus 541 ~~~~~~~h~~~v~~~~fs~dg~~l~-s~~~---D~~i~~Wd 577 (577)
T 2ymu_A 541 LLQTLTGHSSSVWGVAFSPDGQTIA-SASS---DKTVKLWN 577 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEE-EEET---TSCEEEEC
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEE-EEeC---CCEEEEeC
Confidence 6667766677788899999998665 3322 23455554
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.4e-09 Score=112.86 Aligned_cols=203 Identities=13% Similarity=0.079 Sum_probs=123.3
Q ss_pred eEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEE
Q 003878 239 SIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCI 318 (789)
Q Consensus 239 ~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~ 318 (789)
.++|+|||+.++++... ..+|+++++.+.... .........+. ..+.+||||++|+ ..
T Consensus 44 ~~~~s~dg~~l~~~~~~------------------~~~i~~~d~~~~~~~-~~~~~~~~~~~--~~~~~s~dg~~l~-~~ 101 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDF------------------CQTLVQIETQLEPPK-VVAIQEGQSSM--ADVDITPDDQFAV-TV 101 (331)
T ss_dssp EEEECSSSCEEEEEEST------------------TCEEEEEECSSSSCE-EEEEEECSSCC--CCEEECTTSSEEE-EC
T ss_pred eEEEcCCCCEEEEEeCC------------------CCeEEEEECCCCcee-EEecccCCCCc--cceEECCCCCEEE-Ee
Confidence 89999999988877432 236899998765431 22223222232 1278999999998 33
Q ss_pred EcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCe-
Q 003878 319 EENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDW- 397 (789)
Q Consensus 319 ~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~- 397 (789)
. .......|+++|++++. ....+..+.......|+|||+++|+....+ . ..|..++++.....
T Consensus 102 ~-~~~~~~~i~v~d~~~~~-------------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-~-~~i~~~~~~~~g~~~ 165 (331)
T 3u4y_A 102 T-GLNHPFNMQSYSFLKNK-------------FISTIPIPYDAVGIAISPNGNGLILIDRSS-A-NTVRRFKIDADGVLF 165 (331)
T ss_dssp C-CSSSSCEEEEEETTTTE-------------EEEEEECCTTEEEEEECTTSSCEEEEEETT-T-TEEEEEEECTTCCEE
T ss_pred c-CCCCcccEEEEECCCCC-------------eEEEEECCCCccceEECCCCCEEEEEecCC-C-ceEEEEEECCCCcEe
Confidence 2 22112379999998742 112222222223355999999888765432 2 22555555443211
Q ss_pred ---EEeccCCCCceeeeEEEecCCE-EEEEEEeCCeEEEEEEECCCCce---eeecccCCeeEEEeecccCCcEEEEEEc
Q 003878 398 ---FEVIPEAERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGSL---LHQLPIEIGSVNAISARREDSVVFISFT 470 (789)
Q Consensus 398 ---~~l~~~~~~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl~tG~~---~~~l~~~~~~v~~~s~s~d~~~l~~~~s 470 (789)
..+++.. .....+.+++++. +++....++ .|.+||+++++. ...+..+ ..+..+.++||++.++++..
T Consensus 166 ~~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~--~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~ 240 (331)
T 3u4y_A 166 DTGQEFISGG--TRPFNITFTPDGNFAFVANLIGN--SIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTE 240 (331)
T ss_dssp EEEEEEECSS--SSEEEEEECTTSSEEEEEETTTT--EEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECS
T ss_pred ecCCccccCC--CCccceEECCCCCEEEEEeCCCC--eEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEc
Confidence 2233332 3357788888654 665554443 799999988876 4555433 23345678999998876543
Q ss_pred CCCCCcEEEEEECCCCC
Q 003878 471 SFLIPGIVYQCNLKTET 487 (789)
Q Consensus 471 s~~~P~~ly~~dl~tg~ 487 (789)
....++.+|+.+++
T Consensus 241 ---~~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 241 ---STVDVFNFNQLSGT 254 (331)
T ss_dssp ---SEEEEEEEETTTTE
T ss_pred ---CCCEEEEEECCCCc
Confidence 45679999999884
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=5.2e-09 Score=114.99 Aligned_cols=200 Identities=14% Similarity=0.012 Sum_probs=122.7
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...++|+|||+.|+....+ ..|++|++.+.. .+..+.. +...+..+.|+|||++|+.
T Consensus 126 v~~v~~s~dg~~l~s~~~d-------------------~~i~iwd~~~~~--~~~~~~~--h~~~v~~~~~~p~~~~l~s 182 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAED-------------------RLIRIWDIENRK--IVMILQG--HEQDIYSLDYFPSGDKLVS 182 (393)
T ss_dssp EEEEEECTTSSEEEEEETT-------------------SCEEEEETTTTE--EEEEECC--CSSCEEEEEECTTSSEEEE
T ss_pred EEEEEECCCCCEEEEEcCC-------------------CeEEEEECCCCc--EEEEEcc--CCCCEEEEEEcCCCCEEEE
Confidence 3679999999999866433 348888987542 2233333 3344678999999999876
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEec-CCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAN-DDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~-dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
.+. ...|.++|+.++. ....+..........++| +|+.|+..+. +..|..+|+.++.
T Consensus 183 ~s~-----d~~v~iwd~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~~l~~~s~----d~~v~iwd~~~~~ 240 (393)
T 1erj_A 183 GSG-----DRTVRIWDLRTGQ-------------CSLTLSIEDGVTTVAVSPGDGKYIAAGSL----DRAVRVWDSETGF 240 (393)
T ss_dssp EET-----TSEEEEEETTTTE-------------EEEEEECSSCEEEEEECSTTCCEEEEEET----TSCEEEEETTTCC
T ss_pred ecC-----CCcEEEEECCCCe-------------eEEEEEcCCCcEEEEEECCCCCEEEEEcC----CCcEEEEECCCCc
Confidence 543 3458889998742 111111111112234788 7777765443 3568888988765
Q ss_pred CeEEecc-----CCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCcee------------eecccCCeeEEEeec
Q 003878 396 DWFEVIP-----EAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLL------------HQLPIEIGSVNAISA 458 (789)
Q Consensus 396 ~~~~l~~-----~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~------------~~l~~~~~~v~~~s~ 458 (789)
....+.. ......+..+.+++++.++++...++ .|.+||+.++... ..+..+...+..+.+
T Consensus 241 ~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~--~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 318 (393)
T 1erj_A 241 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR--SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 318 (393)
T ss_dssp EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS--EEEEEEC---------------CEEEEEECCSSCEEEEEE
T ss_pred EEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC--EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEE
Confidence 2222211 11224678899998777888888887 6888998654321 112222344667788
Q ss_pred ccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 459 RREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 459 s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
++++..++. .+ .-..++.||+.+++
T Consensus 319 ~~~~~~l~s-gs---~D~~v~iwd~~~~~ 343 (393)
T 1erj_A 319 TQNDEYILS-GS---KDRGVLFWDKKSGN 343 (393)
T ss_dssp CGGGCEEEE-EE---TTSEEEEEETTTCC
T ss_pred CCCCCEEEE-Ee---CCCeEEEEECCCCe
Confidence 888876553 22 34689999998885
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.2e-09 Score=128.41 Aligned_cols=265 Identities=12% Similarity=0.035 Sum_probs=161.3
Q ss_pred eEeCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCc---------eE
Q 003878 87 FKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGS---------DW 157 (789)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~---------~~ 157 (789)
.++|.++.|...+++.....||+.+..+++... +. + ....+.+++|||| +.|+|+....+. ..
T Consensus 171 SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~--~~--~---~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~ 242 (741)
T 1yr2_A 171 SDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLA--DE--L---KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN 242 (741)
T ss_dssp CTTSSEEEEEEEETTCSEEEEEEEETTTCCEEE--EE--E---EEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCC--cc--C---CCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence 358999999988877777789999876555321 11 0 0012357889999 999998854331 14
Q ss_pred EEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeeccccc
Q 003878 158 ATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKF 237 (789)
Q Consensus 158 ~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~ 237 (789)
.+|+++++.|+......+... ++.. ...
T Consensus 243 ~~v~~~~lgt~~~~~~lv~~~---------------------~~~~-------------------------------~~~ 270 (741)
T 1yr2_A 243 QTVWLHRLGTPQSADQPVFAT---------------------PELP-------------------------------KRG 270 (741)
T ss_dssp CEEEEEETTSCGGGCEEEECC---------------------TTCT-------------------------------TCE
T ss_pred CEEEEEECCCCchhCEEEecc---------------------CCCC-------------------------------eEE
Confidence 579999998875321111100 0000 013
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC-cEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE-DILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~-~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
.++.|||||+.|++..... .....+||++++.++..+ ...+....+ .. ..+ ++|||++|++
T Consensus 271 ~~~~~SpDG~~l~~~~~~~--------------~~~~~~l~~~d~~~~~~~~~~~l~~~~~-~~--~~~-~~~dg~~l~~ 332 (741)
T 1yr2_A 271 HGASVSSDGRWVVITSSEG--------------TDPVNTVHVARVTNGKIGPVTALIPDLK-AQ--WDF-VDGVGDQLWF 332 (741)
T ss_dssp EEEEECTTSCEEEEEEECT--------------TCSCCEEEEEEEETTEECCCEEEECSSS-SC--EEE-EEEETTEEEE
T ss_pred EEEEECCCCCEEEEEEEcc--------------CCCcceEEEEECCCCCCcccEEecCCCC-ce--EEE-EeccCCEEEE
Confidence 5789999999999987542 113457999998765223 334443322 22 122 4699999999
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND 396 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~ 396 (789)
.++.. .....|+++|++++. ..+..++.+.......++..++.+++....+ ...+|+.+++++..
T Consensus 333 ~s~~~-~~~~~l~~~d~~~~~------------~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~d-g~~~l~~~~~~g~~- 397 (741)
T 1yr2_A 333 VSGDG-APLKKIVRVDLSGST------------PRFDTVVPESKDNLESVGIAGNRLFASYIHD-AKSQVLAFDLDGKP- 397 (741)
T ss_dssp EECTT-CTTCEEEEEECSSSS------------CEEEEEECCCSSEEEEEEEEBTEEEEEEEET-TEEEEEEEETTSCE-
T ss_pred EECCC-CCCCEEEEEeCCCCc------------cccEEEecCCCCeEEEEEEECCEEEEEEEEC-CEEEEEEEeCCCCc-
Confidence 87653 235789999987631 1134444433222222333467777776654 45789999986543
Q ss_pred eEEeccCCCCceeeeEEEecC-CEEEEEEEeCC-eEEEEEEECCCCceeeec
Q 003878 397 WFEVIPEAERDVLESATAVNL-NQMIVSYLSDV-KYVLQIRDLKNGSLLHQL 446 (789)
Q Consensus 397 ~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g-~~~L~~~dl~tG~~~~~l 446 (789)
.+.+..+. ...+..++++++ +.+++.+.... ...|+++|+++|+. +.+
T Consensus 398 ~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~-~~l 447 (741)
T 1yr2_A 398 AGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT-TPW 447 (741)
T ss_dssp EEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE-EEC
T ss_pred eeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE-EEE
Confidence 34443222 355677777764 45776666544 45899999987764 444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-09 Score=130.13 Aligned_cols=272 Identities=10% Similarity=0.003 Sum_probs=173.6
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.+..++|||||++||.+.. . ..|++||+.+++.+. .+... .+ -..+..+.|+++
T Consensus 15 ~v~~i~~sp~~~~la~~~~-~----g~v~iwd~~~~~~~~-~~~~~-------~~----~v~~~~~s~~~~--------- 68 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLY-S----GRVEIWNYETQVEVR-SIQVT-------ET----PVRAGKFIARKN--------- 68 (814)
T ss_dssp CEEEEEECSSSSEEEEEET-T----SEEEEEETTTTEEEE-EEECC-------SS----CEEEEEEEGGGT---------
T ss_pred ceEEEEECCCCCEEEEEeC-C----CEEEEEECCCCceEE-EEecC-------CC----cEEEEEEeCCCC---------
Confidence 4788999999999997653 2 379999999986543 12111 01 012334446663
Q ss_pred eeEEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEEC
Q 003878 213 FFFYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFL 282 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 282 (789)
.++++..+|...+|.+.. .-....++|+|||+.|+....+ ..|.+|++
T Consensus 69 ---~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------------------g~i~vw~~ 126 (814)
T 3mkq_A 69 ---WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD-------------------LTVKLWNW 126 (814)
T ss_dssp ---EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETT-------------------SEEEEEEG
T ss_pred ---EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCC-------------------CEEEEEEC
Confidence 566677789999998654 1224678999999998866432 35888888
Q ss_pred CCCCCCcEEEEecCCCCeeEEEEEEec-CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc--c
Q 003878 283 GTKQSEDILCWKDPEHPKYIFSGHVTE-DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG--F 359 (789)
Q Consensus 283 g~~~~~~~~~~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~--~ 359 (789)
.+... ....+.. +...+..+.|+| ||+.++.... ...|+++|+.++. +...+... .
T Consensus 127 ~~~~~-~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~-----dg~v~vwd~~~~~-------------~~~~~~~~~~~ 185 (814)
T 3mkq_A 127 ENNWA-LEQTFEG--HEHFVMCVAFNPKDPSTFASGCL-----DRTVKVWSLGQST-------------PNFTLTTGQER 185 (814)
T ss_dssp GGTSE-EEEEEEC--CSSCEEEEEEETTEEEEEEEEET-----TSEEEEEETTCSS-------------CSEEEECCCTT
T ss_pred CCCce-EEEEEcC--CCCcEEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCc-------------ceeEEecCCCC
Confidence 65422 1223332 234467899999 7877776553 3458999987642 11222221 1
Q ss_pred cceeEEEec--CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEEC
Q 003878 360 DAQYEVIAN--DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 360 ~~~~~~~s~--dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl 437 (789)
......|+| +|..++..+ .++.|..+|+.+++....+..+. ..+..+.+++++.++++...++ .|++||+
T Consensus 186 ~v~~~~~~~~~~~~~l~~~~----~dg~i~~~d~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg--~v~vwd~ 257 (814)
T 3mkq_A 186 GVNYVDYYPLPDKPYMITAS----DDLTIKIWDYQTKSCVATLEGHM--SNVSFAVFHPTLPIIISGSEDG--TLKIWNS 257 (814)
T ss_dssp CCCEEEECCSTTCCEEEEEC----TTSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSEEEEEETTS--CEEEEET
T ss_pred CEEEEEEEECCCCCEEEEEe----CCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEeCCC--eEEEEEC
Confidence 223345787 888776543 24689999998775333333333 5678899998777888888776 6889999
Q ss_pred CCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 438 KNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 438 ~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
.+++....+..+...+..+++++++..+++...+ ...+..+++.
T Consensus 258 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 301 (814)
T 3mkq_A 258 STYKVEKTLNVGLERSWCIATHPTGRKNYIASGF---DNGFTVLSLG 301 (814)
T ss_dssp TTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE---TTEEEEEECS
T ss_pred CCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe---CCCEEEEEcC
Confidence 9888766666666667778888888754333222 2244555544
|
| >1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-11 Score=141.97 Aligned_cols=231 Identities=18% Similarity=0.205 Sum_probs=136.3
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCCHHH--H-HHHHcCCeEEEEEeecCCCCCChhHHhcc
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSR--T-ILMRHLGAVFCIANIRGGGEYGEEWHKGG 590 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~~~~--~-~~l~~~G~~v~~~~~RG~g~~g~~~~~~~ 590 (789)
+.|. +.+.++.|++...+++.|+||++|||...... ..+.... . .+....|++|+.+|||.+. +| |....
T Consensus 102 sedc---l~l~v~~P~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~l~~~~l~~~~~~vvv~~nYRl~~-~g--f~~~~ 175 (544)
T 1thg_A 102 NEDC---LYLNVFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGP-FG--FLGGD 175 (544)
T ss_dssp CSCC---CEEEEEEETTCCTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHH-HH--HCCSH
T ss_pred CCCC---eEEEEEeCCCCCCCCCCcEEEEECCCccccCCccccCchHHHHHHhhcCCCEEEEeCCCCCCc-cc--CCCcc
Confidence 4566 44566788765445789999999998544332 2333211 1 1222358999999999864 11 11000
Q ss_pred ---cccCCcchHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhC--------CCceeEEEecCCccccc
Q 003878 591 ---ALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQR--------PDLFGCALAHVGVMDML 656 (789)
Q Consensus 591 ---~~~~~~~~~~D~~~~~~~L~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--------pd~f~a~v~~~p~~d~~ 656 (789)
....+...+.|.++|++|+.++- ..||+||.|+|+|+||.+++.++... +.+|+++|+++|.....
T Consensus 176 ~~~~~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~~~~~~~~~~~~~~~lf~~~i~~Sg~~~~~ 255 (544)
T 1thg_A 176 AITAEGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGGPLPY 255 (544)
T ss_dssp HHHHHTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCCCCCC
T ss_pred cccccCCCchhHHHHHHHHHHHHHHHHHhCCChhHeEEEEECHHHHHHHHHHhCCCccccccccccccceEEeccccccc
Confidence 01233446899999999998762 36999999999999999998877752 46899999999854221
Q ss_pred ccccc-cCCc---cchhhcCCCCc---HHHHHHHHhcCcccCCCCCCC-CCCCCCCCCCe-EEEEecCCCCCCCcHHHHH
Q 003878 657 RYHKF-TIGH---AWVSDFGCSEE---EEEFYWLIKYSPLHNVRRPWE-QNPDKPFQYPS-TLLLTADHDDRVVPLHSLK 727 (789)
Q Consensus 657 ~~~~~-~~~~---~~~~e~g~p~~---~~~~~~l~~~sP~~~v~~~~~-~~~~~~~~~pp-~Li~~g~~D~~V~~~~~~~ 727 (789)
..... .... ......|++.. .+..+.|++.++...+..... .... ....++ .+.....-|..+.+.++.+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~gc~~~~~~~~~~~cLr~~~~~~l~~~~~~~~~~~-~~~~~~~~~~f~P~~Dg~~l~~~p~~ 334 (544)
T 1thg_A 256 HDSSSVGPDISYNRFAQYAGCDTSASANDTLECLRSKSSSVLHDAQNSYDLKD-LFGLLPQFLGFGPRPDGNIIPDAAYE 334 (544)
T ss_dssp SSSCCSSSSCHHHHHHHHHTCCTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHH-STTTSCGGGTSCCCCCSSSSCSCHHH
T ss_pred CcCChHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhcCCHHHHHHhhhhccccc-ccccccccccceeeeCCcccCcCHHH
Confidence 11110 1111 11233566532 145566776654332211000 0000 000010 1112334577777788877
Q ss_pred HHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCC
Q 003878 728 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVG 762 (789)
Q Consensus 728 ~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~ 762 (789)
+.++.+.. ++|+.+-...++||.+.
T Consensus 335 ~~~~g~~~----------~vp~l~G~~~~Eg~~f~ 359 (544)
T 1thg_A 335 LFRSGRYA----------KVPYISGNQEDEGTAFA 359 (544)
T ss_dssp HHHTTCSC----------CCCEEEEEETBTTTTTG
T ss_pred HHhcCCCC----------CccEEEEeecCchhhhc
Confidence 76655444 88999999999999875
|
| >3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-11 Score=127.73 Aligned_cols=187 Identities=12% Similarity=-0.028 Sum_probs=107.8
Q ss_pred cEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCC
Q 003878 539 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSR 618 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~ 618 (789)
|.||++||..+.... |.. +...|. .||.|+.+|+||.|... ......+++++.+.+..+++.- ...+
T Consensus 52 ~~lvllHG~~~~~~~--~~~-l~~~L~-~~~~v~~~D~~G~G~S~--------~~~~~~~~~~~a~~~~~~l~~~-~~~~ 118 (280)
T 3qmv_A 52 LRLVCFPYAGGTVSA--FRG-WQERLG-DEVAVVPVQLPGRGLRL--------RERPYDTMEPLAEAVADALEEH-RLTH 118 (280)
T ss_dssp EEEEEECCTTCCGGG--GTT-HHHHHC-TTEEEEECCCTTSGGGT--------TSCCCCSHHHHHHHHHHHHHHT-TCSS
T ss_pred ceEEEECCCCCChHH--HHH-HHHhcC-CCceEEEEeCCCCCCCC--------CCCCCCCHHHHHHHHHHHHHHh-CCCC
Confidence 889999997765433 443 456676 59999999999976431 1122345666655555555431 1346
Q ss_pred cEEEEeeChHHHHHHHHHHhCCCcee----EEEecCCccccc-ccccc-cCC-cc---chhhcC-CCC----c-------
Q 003878 619 KLCIEGGSNGGLLVGACINQRPDLFG----CALAHVGVMDML-RYHKF-TIG-HA---WVSDFG-CSE----E------- 676 (789)
Q Consensus 619 ~i~i~G~S~GG~l~~~~~~~~pd~f~----a~v~~~p~~d~~-~~~~~-~~~-~~---~~~e~g-~p~----~------- 676 (789)
++.++|+|+||.+++.++.++|++.. .+++..+..... ..... ... .. +...++ .+. +
T Consensus 119 ~~~lvG~S~Gg~va~~~a~~~p~~~~~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (280)
T 3qmv_A 119 DYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDADTLGAAYFDRR 198 (280)
T ss_dssp SEEEEEETHHHHHHHHHHHHHHHTTCCCCSCEEEESCCCGGGCSCCCGGGSCHHHHHHHHHHHTCCC---------CCTT
T ss_pred CEEEEEeCHhHHHHHHHHHHHHHcCCCCceEEEEECCCCCCCcCcccccccCHHHHHHHHHHhCCCChhhhcCHHHHHHH
Confidence 89999999999999999999887765 444433221111 00000 000 00 001111 110 0
Q ss_pred ----HHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEE
Q 003878 677 ----EEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGR 752 (789)
Q Consensus 677 ----~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~ 752 (789)
...+..+..+.+. ....+ ..|+|+++|++|..+++..+.++.+.+ ...+.+.
T Consensus 199 ~~~~~~~~~~~~~~~~~-~~~~i----------~~P~l~i~G~~D~~~~~~~~~~~~~~~-------------~~~~~~~ 254 (280)
T 3qmv_A 199 LPVLRADLRACERYDWH-PRPPL----------DCPTTAFSAAADPIATPEMVEAWRPYT-------------TGSFLRR 254 (280)
T ss_dssp HHHHHHHHHHHHTCCCC-CCCCB----------CSCEEEEEEEECSSSCHHHHHTTGGGB-------------SSCEEEE
T ss_pred HHHHHHHHHHHHhcccc-CCCce----------ecCeEEEEecCCCCcChHHHHHHHHhc-------------CCceEEE
Confidence 0112223333321 12333 689999999999999987766554332 3346777
Q ss_pred EeCCCCcCCCC
Q 003878 753 IERKAGHGVGL 763 (789)
Q Consensus 753 ~~~~~gH~~~~ 763 (789)
+++ +||....
T Consensus 255 ~~~-ggH~~~~ 264 (280)
T 3qmv_A 255 HLP-GNHFFLN 264 (280)
T ss_dssp EEE-EETTGGG
T ss_pred Eec-CCCeEEc
Confidence 776 4998654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.2e-09 Score=116.51 Aligned_cols=248 Identities=11% Similarity=0.103 Sum_probs=153.9
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcC--CCceecccccccccccccCccceeeeeecccccccccccccccc
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIE--DQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~--tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
.+..++|||||++|+++....| .|++||+. +++.+. .+.... + +.
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg----~v~iwd~~~~~~~~~~-~~~~~~----~---------------~~--------- 150 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDK----SLLVFDVDKTSKNVLK-LRKRFC----F---------------SK--------- 150 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGT----EEEEEEECSSSSSCEE-EEEEEE----C---------------SS---------
T ss_pred ceEEEEEcCCCCEEEEEECCCC----eEEEEECcCCCCceee-eeeccc----C---------------CC---------
Confidence 4788999999999866554434 79999998 775443 111100 0 00
Q ss_pred ceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc-
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED- 289 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~- 289 (789)
....++|+|||+.|+.... ...++.+++.+.....
T Consensus 151 -------------------------~v~~~~~sp~~~~l~~~~~-------------------~g~v~~~~~~~~~~~~~ 186 (450)
T 2vdu_B 151 -------------------------RPNAISIAEDDTTVIIADK-------------------FGDVYSIDINSIPEEKF 186 (450)
T ss_dssp -------------------------CEEEEEECTTSSEEEEEET-------------------TSEEEEEETTSCCCSSC
T ss_pred -------------------------CceEEEEcCCCCEEEEEeC-------------------CCcEEEEecCCcccccc
Confidence 2468999999999987643 2357888876554321
Q ss_pred -EEEEecCCCCeeEEEEEEecC---CcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-ccccc-ee
Q 003878 290 -ILCWKDPEHPKYIFSGHVTED---GQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-DGFDA-QY 363 (789)
Q Consensus 290 -~~~~~~~~~~~~~~~~~~SpD---G~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-~~~~~-~~ 363 (789)
...+.. +...+..+.|+|| |++|+....+ ..|+++|+.++. ...... ..... ..
T Consensus 187 ~~~~~~~--h~~~v~~~~~sp~~~~~~~l~s~~~d-----~~i~vwd~~~~~-------------~~~~~~~~h~~~v~~ 246 (450)
T 2vdu_B 187 TQEPILG--HVSMLTDVHLIKDSDGHQFIITSDRD-----EHIKISHYPQCF-------------IVDKWLFGHKHFVSS 246 (450)
T ss_dssp CCCCSEE--CSSCEEEEEEEECTTSCEEEEEEETT-----SCEEEEEESCTT-------------CEEEECCCCSSCEEE
T ss_pred cceeeec--ccCceEEEEEcCCCCCCcEEEEEcCC-----CcEEEEECCCCc-------------eeeeeecCCCCceEE
Confidence 001111 2234668899999 8888765532 448888887642 122212 11111 22
Q ss_pred EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccC-----------------------CCCceeeeEEEecCCEE
Q 003878 364 EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPE-----------------------AERDVLESATAVNLNQM 420 (789)
Q Consensus 364 ~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~-----------------------~~~~~i~~v~~~~~~~l 420 (789)
..|+ +|+.|+..+ .+..|.++|+.+++....+..+ .....+..+.+++++..
T Consensus 247 ~~~s-d~~~l~s~~----~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 321 (450)
T 2vdu_B 247 ICCG-KDYLLLSAG----GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF 321 (450)
T ss_dssp EEEC-STTEEEEEE----SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred EEEC-CCCEEEEEe----CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence 3488 898887554 3468999999887622222110 11245678888886555
Q ss_pred EEEEE-eCCeEEEEEEEC--CCC---ceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCc------EEEEEECCCCC
Q 003878 421 IVSYL-SDVKYVLQIRDL--KNG---SLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPG------IVYQCNLKTET 487 (789)
Q Consensus 421 v~~~~-~~g~~~L~~~dl--~tG---~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~------~ly~~dl~tg~ 487 (789)
++... .++ .|++|++ .++ +....+..+ +.+..+++++ +.++++..+...|. .+|.++..+++
T Consensus 322 l~~~~~~d~--~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~--~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~ 395 (450)
T 2vdu_B 322 VAFFVEATK--CIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN--DEFQVTLDNKESSGVQKNFAKFIEYNLNENS 395 (450)
T ss_dssp EEEEETTCS--EEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET--TEEEEEECCTTCCSSCCCSEEEEEEETTTTE
T ss_pred EEEEECCCC--eEEEEEeccCCCCceeeccEeccC-CceEEEEecC--CcEEEEEecccCCCCCCcceEEEEEEcCCCe
Confidence 55555 554 6888888 444 333444444 5677788887 35777888877776 89999888773
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-09 Score=118.65 Aligned_cols=294 Identities=11% Similarity=0.010 Sum_probs=166.8
Q ss_pred EEeEEeCCCCc-EEEEEEecCCceEEEEEEEEc----CCCce------ecccccccccc---cccCccceeeeeeccccc
Q 003878 134 LIKVSVSEDAK-YLAYALSYSGSDWATIKLMRI----EDQIV------EADALSWVCFC---FSHSFGYFFHLTISLLNV 199 (789)
Q Consensus 134 ~~~~~~SpDg~-~la~~~~~~g~~~~~i~v~dl----~tg~~------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 199 (789)
+..+++||||+ +||.+.. ...|++||+ .+++. .. .+...... ...+.+ -..+..+.
T Consensus 48 v~~~~~s~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~v~~~~~s 117 (425)
T 1r5m_A 48 IVSSTWNPLDESILAYGEK-----NSVARLARIVETDQEGKKYWKLTIIA-ELRHPFALSASSGKTTN----QVTCLAWS 117 (425)
T ss_dssp CSEEEECSSCTTEEEEEET-----BTEEEEEEEEEC------CEEEEEEE-EEECCCCCC------CB----CEEEEEEC
T ss_pred eEEEEECCCCCcEEEEecC-----CceEEEEEEecccCCccccccccccc-cccccccccccccCCCC----ceEEEEEc
Confidence 56789999999 8886432 347999999 88862 11 11110000 000011 11222334
Q ss_pred cccccccccccceeeEEEeeeccccceeeeeeec---------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCc---
Q 003878 200 PTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVS---------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGT--- 267 (789)
Q Consensus 200 p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~---------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~--- 267 (789)
|++ .+++++..+|...+|.... .-....++|+||++.|+....+..-...+...+.
T Consensus 118 ~~~------------~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 118 HDG------------NSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp TTS------------SEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred CCC------------CEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence 565 3677778889999997433 2224678999999999877654321000000000
Q ss_pred -----------------------c-----------ccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcE
Q 003878 268 -----------------------E-----------TDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQY 313 (789)
Q Consensus 268 -----------------------~-----------~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~ 313 (789)
. --......|+++++.+... ...+.. +...+..+.|+|||++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~--~~~~~~--~~~~i~~~~~~~~~~~ 261 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP--TGKLIG--HHGPISVLEFNDTNKL 261 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC--SEEECC--CSSCEEEEEEETTTTE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce--eeeecc--CCCceEEEEECCCCCE
Confidence 0 0001123466666655422 122222 2334668899999998
Q ss_pred EEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-eeEEEecCCCEEEEEECCCCCCceEEEEECC
Q 003878 314 LVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLK 392 (789)
Q Consensus 314 l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~ 392 (789)
|+....+ ..|+++|+.++. ....+...... ....|+|+| .++..+. +..|..+|+.
T Consensus 262 l~~~~~d-----~~i~i~d~~~~~-------------~~~~~~~~~~~i~~~~~~~~~-~l~~~~~----d~~i~i~d~~ 318 (425)
T 1r5m_A 262 LLSASDD-----GTLRIWHGGNGN-------------SQNCFYGHSQSIVSASWVGDD-KVISCSM----DGSVRLWSLK 318 (425)
T ss_dssp EEEEETT-----SCEEEECSSSBS-------------CSEEECCCSSCEEEEEEETTT-EEEEEET----TSEEEEEETT
T ss_pred EEEEcCC-----CEEEEEECCCCc-------------cceEecCCCccEEEEEECCCC-EEEEEeC----CCcEEEEECC
Confidence 8876532 348888887632 12222211111 223488988 5544332 3689999998
Q ss_pred CCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCc--------------------eeeecccCCe-
Q 003878 393 EPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGS--------------------LLHQLPIEIG- 451 (789)
Q Consensus 393 ~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~--------------------~~~~l~~~~~- 451 (789)
+++....+..+. ..+..+.+++++.++++...++ .|.+|++.+++ .+..+..+..
T Consensus 319 ~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~~dg--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (425)
T 1r5m_A 319 QNTLLALSIVDG--VPIFAGRISQDGQKYAVAFMDG--QVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDN 394 (425)
T ss_dssp TTEEEEEEECTT--CCEEEEEECTTSSEEEEEETTS--CEEEEECHHHHC--------------CEECCEEEEECCTTCC
T ss_pred CCcEeEecccCC--ccEEEEEEcCCCCEEEEEECCC--eEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccC
Confidence 775233333332 4678899998777777787776 68889987666 4455554433
Q ss_pred -eEEEeecccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 452 -SVNAISARREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 452 -~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
.+..+.++++++.++.... -+.++.|++.
T Consensus 395 ~~v~~~~~s~~~~~l~~~~~----dg~i~iw~~~ 424 (425)
T 1r5m_A 395 DYIFDLSWNCAGNKISVAYS----LQEGSVVAIP 424 (425)
T ss_dssp CCEEEEEECTTSSEEEEEES----SSCCEEEECC
T ss_pred CceEEEEccCCCceEEEEec----CceEEEEeec
Confidence 7888999999987664432 2467777764
|
| >1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-10 Score=120.30 Aligned_cols=103 Identities=16% Similarity=0.099 Sum_probs=72.1
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
.|.||++||..+... .|.. ....|.++||.|+++|.||.|..... ...+++|+.+.+..+++.-..++
T Consensus 16 ~~~vvllHG~~~~~~--~w~~-~~~~L~~~~~~vi~~Dl~GhG~S~~~---------~~~~~~~~a~~l~~~l~~l~~~~ 83 (264)
T 1r3d_A 16 TPLVVLVHGLLGSGA--DWQP-VLSHLARTQCAALTLDLPGHGTNPER---------HCDNFAEAVEMIEQTVQAHVTSE 83 (264)
T ss_dssp BCEEEEECCTTCCGG--GGHH-HHHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHTTCCTT
T ss_pred CCcEEEEcCCCCCHH--HHHH-HHHHhcccCceEEEecCCCCCCCCCC---------CccCHHHHHHHHHHHHHHhCcCC
Confidence 488999999776543 3444 34555547999999999998865321 11346677666666666532332
Q ss_pred CcEEEEeeChHHHHHHH---HHHhCCCceeEEEecCCc
Q 003878 618 RKLCIEGGSNGGLLVGA---CINQRPDLFGCALAHVGV 652 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~---~~~~~pd~f~a~v~~~p~ 652 (789)
.++.++|||+||.+++. ++.++|++++++|+..+.
T Consensus 84 ~p~~lvGhSmGG~va~~~~~~a~~~p~~v~~lvl~~~~ 121 (264)
T 1r3d_A 84 VPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGH 121 (264)
T ss_dssp SEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCC
T ss_pred CceEEEEECHhHHHHHHHHHHHhhCccccceEEEecCC
Confidence 23999999999999999 778899999999987653
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.9e-09 Score=116.12 Aligned_cols=204 Identities=11% Similarity=0.044 Sum_probs=127.0
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...++|+|||+.|+++.. ....|.+|++.....+....+.....+..+..+.|+|||++|+.
T Consensus 105 v~~~~~s~d~~~l~~~~~------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 166 (450)
T 2vdu_B 105 IRNLRLTSDESRLIACAD------------------SDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVII 166 (450)
T ss_dssp EEEEEECTTSSEEEEEEG------------------GGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred eEEEEEcCCCCEEEEEEC------------------CCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEE
Confidence 468899999999876642 23458888887211222333322122344668999999999987
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce-eEEEecC---CCEEEEEECCCCCCceEEEEECC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEVIAND---DTVFTFLTNKDAPKYKIIRVDLK 392 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~d---G~~l~~~tn~~~~~~~L~~~dl~ 392 (789)
... ...++++++.++... ..+...+....... ...|+|+ |+.|+..+ . +..|..+|+.
T Consensus 167 ~~~-----~g~v~~~~~~~~~~~---------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~-~---d~~i~vwd~~ 228 (450)
T 2vdu_B 167 ADK-----FGDVYSIDINSIPEE---------KFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD-R---DEHIKISHYP 228 (450)
T ss_dssp EET-----TSEEEEEETTSCCCS---------SCCCCCSEECSSCEEEEEEEECTTSCEEEEEEE-T---TSCEEEEEES
T ss_pred EeC-----CCcEEEEecCCcccc---------cccceeeecccCceEEEEEcCCCCCCcEEEEEc-C---CCcEEEEECC
Confidence 653 356899998774311 00111112111112 2348998 66665433 2 3578888988
Q ss_pred CCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-----------------------
Q 003878 393 EPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE----------------------- 449 (789)
Q Consensus 393 ~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~----------------------- 449 (789)
++.....+.... ...+..+.++ ++.++++...++ .|.+||+.+|+.+..+...
T Consensus 229 ~~~~~~~~~~~h-~~~v~~~~~s-d~~~l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
T 2vdu_B 229 QCFIVDKWLFGH-KHFVSSICCG-KDYLLLSAGGDD--KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENND 304 (450)
T ss_dssp CTTCEEEECCCC-SSCEEEEEEC-STTEEEEEESSS--EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------
T ss_pred CCceeeeeecCC-CCceEEEEEC-CCCEEEEEeCCC--eEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccc
Confidence 776333433222 2567888888 677777888776 7999999988765555421
Q ss_pred --CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEEC
Q 003878 450 --IGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 450 --~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl 483 (789)
...+..+.++++++.+++... .-..++.|++
T Consensus 305 ~~~~~v~~i~~~~~~~~l~~~~~---~d~~i~iw~~ 337 (450)
T 2vdu_B 305 IIEFAVSKIIKSKNLPFVAFFVE---ATKCIIILEM 337 (450)
T ss_dssp CBCCCEEEEEECSSSSEEEEEET---TCSEEEEEEE
T ss_pred cceEEEEEEEEeCCCCEEEEEEC---CCCeEEEEEe
Confidence 234667888899987776542 2468888888
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-09 Score=115.15 Aligned_cols=198 Identities=17% Similarity=0.029 Sum_probs=132.6
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...++|+|+++.++-... ...|++|++.++.. +..+... ...+..+.|+|||++|+.
T Consensus 83 v~~~~~~~~~~~l~s~s~-------------------D~~i~lWd~~~~~~--~~~~~~~--~~~~~~~~~spdg~~l~~ 139 (321)
T 3ow8_A 83 VVSVDISHTLPIAASSSL-------------------DAHIRLWDLENGKQ--IKSIDAG--PVDAWTLAFSPDSQYLAT 139 (321)
T ss_dssp EEEEEECSSSSEEEEEET-------------------TSEEEEEETTTTEE--EEEEECC--TTCCCCEEECTTSSEEEE
T ss_pred EEEEEECCCCCEEEEEeC-------------------CCcEEEEECCCCCE--EEEEeCC--CccEEEEEECCCCCEEEE
Confidence 468899999988775533 24688999876532 2223322 222346899999999986
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
... ...+.++++.++. ....+..... .....|+|+|+.|+..+. ++.|..+|+.+++
T Consensus 140 g~~-----dg~v~i~~~~~~~-------------~~~~~~~~~~~v~~~~~spdg~~lasg~~----dg~i~iwd~~~~~ 197 (321)
T 3ow8_A 140 GTH-----VGKVNIFGVESGK-------------KEYSLDTRGKFILSIAYSPDGKYLASGAI----DGIINIFDIATGK 197 (321)
T ss_dssp ECT-----TSEEEEEETTTCS-------------EEEEEECSSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTE
T ss_pred EcC-----CCcEEEEEcCCCc-------------eeEEecCCCceEEEEEECCCCCEEEEEcC----CCeEEEEECCCCc
Confidence 542 3568889988742 1112221111 122348999998876543 3578899998876
Q ss_pred CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCC
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIP 475 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P 475 (789)
....+..+. ..+..+.+++++.++++...++ .|++||+.+++....+......+..++++|++..++... .-
T Consensus 198 ~~~~~~~h~--~~v~~l~~spd~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s----~D 269 (321)
T 3ow8_A 198 LLHTLEGHA--MPIRSLTFSPDSQLLVTASDDG--YIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS----SD 269 (321)
T ss_dssp EEEEECCCS--SCCCEEEECTTSCEEEEECTTS--CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE----TT
T ss_pred EEEEEcccC--CceeEEEEcCCCCEEEEEcCCC--eEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe----CC
Confidence 333333333 4578899998778888888877 689999987776666665666788899999998665332 24
Q ss_pred cEEEEEECCCCC
Q 003878 476 GIVYQCNLKTET 487 (789)
Q Consensus 476 ~~ly~~dl~tg~ 487 (789)
.++..||+.+++
T Consensus 270 ~~v~iwd~~~~~ 281 (321)
T 3ow8_A 270 KSVKVWDVGTRT 281 (321)
T ss_dssp SCEEEEETTTTE
T ss_pred CcEEEEeCCCCE
Confidence 579999998874
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.19 E-value=7.9e-10 Score=120.47 Aligned_cols=201 Identities=10% Similarity=-0.007 Sum_probs=129.7
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
..++|||||+.++.... .....|++|++.+... +..++. ...+.+++|||||++|+..
T Consensus 137 ~~v~fSpDg~~la~as~-----------------~~d~~i~iwd~~~~~~--~~~~~~---~~~V~~v~fspdg~~l~s~ 194 (365)
T 4h5i_A 137 KLVYISREGTVAAIASS-----------------KVPAIMRIIDPSDLTE--KFEIET---RGEVKDLHFSTDGKVVAYI 194 (365)
T ss_dssp EEEEECTTSSCEEEEES-----------------CSSCEEEEEETTTTEE--EEEEEC---SSCCCEEEECTTSSEEEEE
T ss_pred EEEEEcCCCCEEEEEEC-----------------CCCCEEEEeECCCCcE--EEEeCC---CCceEEEEEccCCceEEec
Confidence 46899999999987642 2345689999876532 222332 2235689999999999865
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc--ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD--AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
+. ..+.+++..++.. .......... ..-..|+|||+.++..+..+.....+..+++....
T Consensus 195 s~------~~~~~~~~~~~~~------------~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~ 256 (365)
T 4h5i_A 195 TG------SSLEVISTVTGSC------------IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGN 256 (365)
T ss_dssp CS------SCEEEEETTTCCE------------EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTE
T ss_pred cc------eeEEEEEeccCcc------------eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccce
Confidence 42 2356677665420 0111111111 11234899999888766554444567777776543
Q ss_pred C----eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec-ccCCeeEEEeecccCCcEEEEEEc
Q 003878 396 D----WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL-PIEIGSVNAISARREDSVVFISFT 470 (789)
Q Consensus 396 ~----~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l-~~~~~~v~~~s~s~d~~~l~~~~s 470 (789)
. ...+..+. ..+..+++++++.++++...|+ .|++||+++++.+..+ ..+...|..++++||++.|+ +.+
T Consensus 257 ~~~~~~~~~~~~~--~~V~~~~~Spdg~~lasgs~D~--~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~la-S~S 331 (365)
T 4h5i_A 257 TSVLRSKQVTNRF--KGITSMDVDMKGELAVLASNDN--SIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVA-SVS 331 (365)
T ss_dssp EEEEEEEEEESSC--SCEEEEEECTTSCEEEEEETTS--CEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEE-EEE
T ss_pred ecceeeeeecCCC--CCeEeEEECCCCCceEEEcCCC--EEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEE-EEe
Confidence 1 11222232 4578899999888888888887 6899999988876654 44577788999999998655 332
Q ss_pred CCCCCcEEEEEECCCC
Q 003878 471 SFLIPGIVYQCNLKTE 486 (789)
Q Consensus 471 s~~~P~~ly~~dl~tg 486 (789)
.-.++..+++...
T Consensus 332 ---~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 332 ---AANTIHIIKLPLN 344 (365)
T ss_dssp ---TTSEEEEEECCTT
T ss_pred ---CCCeEEEEEcCCC
Confidence 3458888887644
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.19 E-value=9.1e-10 Score=120.52 Aligned_cols=281 Identities=10% Similarity=0.006 Sum_probs=169.5
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+...|..+.|||||++||- |+...+|+|||+.+++.+. .+... .+ -..+..+.|++
T Consensus 65 H~~~V~~~~~sp~~~~l~s-----~s~D~~v~iWd~~~~~~~~-~~~~h-------~~----~v~~~~~s~~g------- 120 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNWIVS-----ASQDGRLIVWNALTSQKTH-AIKLH-------CP----WVMECAFAPNG------- 120 (380)
T ss_dssp CSSCEEEEEECTTSSCEEE-----EETTSEEEEEETTTTEEEE-EEECC-------CT----TCCCCEECTTS-------
T ss_pred cccEEEEEEEcCCCCEEEE-----EeCCCeEEEEECCCCccce-EEecC-------CC----CEEEEEECCCC-------
Confidence 3345788999999999884 3334589999999986543 11111 00 01122334666
Q ss_pred cceeeEEEeeeccccceeeeeeec-----------------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCC
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVS-----------------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSN 272 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~-----------------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~ 272 (789)
.+++++..++...||.+.. .-......|+|++...+++..
T Consensus 121 -----~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s------------------ 177 (380)
T 3iz6_a 121 -----QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGS------------------ 177 (380)
T ss_dssp -----SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEEC------------------
T ss_pred -----CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEEC------------------
Confidence 3677888999999997642 011245678887655444422
Q ss_pred cccEEEEEECCCCCCCcEEEEec---CCCCeeEEEEEEec-CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCC
Q 003878 273 LYHEFYYHFLGTKQSEDILCWKD---PEHPKYIFSGHVTE-DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDG 348 (789)
Q Consensus 273 ~~~~i~~~~lg~~~~~~~~~~~~---~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~ 348 (789)
....|.+|++.++.. +.++.. ..+...+..+.+++ ++..++..+.+ ..|.++|+....
T Consensus 178 ~D~~i~~wd~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D-----~~v~~wd~~~~~----------- 239 (380)
T 3iz6_a 178 GDQTCVLWDVTTGQR--ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD-----TTVRLWDLRITS----------- 239 (380)
T ss_dssp TTSCEEEECTTTCCE--EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETT-----SCEEEEETTTTC-----------
T ss_pred CCCcEEEEEcCCCcE--EEEeecccCCCCccCeEEEEeecCCCCEEEEEECC-----CeEEEEECCCCC-----------
Confidence 234588888876532 233321 12233456778876 77777655432 348888987421
Q ss_pred CCccEeeeccccce-eEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCC-----CceeeeEEEecCCEEEE
Q 003878 349 LLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAE-----RDVLESATAVNLNQMIV 422 (789)
Q Consensus 349 ~~~~~~l~~~~~~~-~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~-----~~~i~~v~~~~~~~lv~ 422 (789)
.....+....... -..|+|+|+.|+..+ .+..|..+|+.++.....+..+.. ...+..+++++++.+++
T Consensus 240 -~~~~~~~~h~~~v~~v~~~p~~~~l~s~s----~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 314 (380)
T 3iz6_a 240 -RAVRTYHGHEGDINSVKFFPDGQRFGTGS----DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLF 314 (380)
T ss_dssp -CCCEEECCCSSCCCEEEECTTSSEEEEEC----SSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEE
T ss_pred -cceEEECCcCCCeEEEEEecCCCeEEEEc----CCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEE
Confidence 1122222221112 234899999876432 346799999988752222222211 12367788988777888
Q ss_pred EEEeCCeEEEEEEECCCCceeeec----ccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 423 SYLSDVKYVLQIRDLKNGSLLHQL----PIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 423 ~~~~~g~~~L~~~dl~tG~~~~~l----~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
+...++ .|++||+.+++....+ ..+.+.|..++++|++..++ +. + .-..+..|++..+
T Consensus 315 ~g~~dg--~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-sg-s--~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 315 AGYSNG--DCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALC-TG-S--WDKNLKIWAFSGH 376 (380)
T ss_dssp EECTTS--CEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEE-EE-C--TTSCEEEEECCSS
T ss_pred EEECCC--CEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEE-Ee-e--CCCCEEEEecCCC
Confidence 887776 7899999877764444 22355677888999998654 22 2 2457888887655
|
| >3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A | Back alignment and structure |
|---|
Probab=98.80 E-value=2.2e-12 Score=135.24 Aligned_cols=120 Identities=18% Similarity=0.110 Sum_probs=80.2
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCc
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQ 596 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~ 596 (789)
+| .++.+... ++.|.||++||..+... .|.. ....|. +||.|+++|+||.|.....-. ......
T Consensus 13 ~g-~~~~~~~~--------g~~p~vv~lHG~~~~~~--~~~~-~~~~l~-~g~~v~~~D~~G~G~s~~~~~---~~~~~~ 76 (304)
T 3b12_A 13 GD-VTINCVVG--------GSGPALLLLHGFPQNLH--MWAR-VAPLLA-NEYTVVCADLRGYGGSSKPVG---APDHAN 76 (304)
Confidence 67 66654321 34588999999876543 3333 345566 899999999999775432100 000122
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccc
Q 003878 597 NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 654 (789)
Q Consensus 597 ~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d 654 (789)
.+++++.+.+..+++. .+.+++.++|||+||.+++.++.++|++++++|+..|...
T Consensus 77 ~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 132 (304)
T 3b12_A 77 YSFRAMASDQRELMRT--LGFERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPT 132 (304)
Confidence 3344444444444433 2446899999999999999999999999999999887654
|
| >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=4.9e-12 Score=144.50 Aligned_cols=230 Identities=17% Similarity=0.187 Sum_probs=134.7
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCC-CCCHHH---HHHHHcCCeEEEEEeecCCC-CCC--hhHH
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP-SFSVSR---TILMRHLGAVFCIANIRGGG-EYG--EEWH 587 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~-~~~~~~---~~~l~~~G~~v~~~~~RG~g-~~g--~~~~ 587 (789)
+.|. +.+.++.|++....++.|+||++|||....... .+.... ..+..+.|++|+.+|||.+. +|. .+..
T Consensus 94 sedc---l~l~v~~P~~~~~~~~~Pv~v~iHGGg~~~g~~~~~~~~~l~~~~~~~~~~~vvv~~nYRl~~~gf~~~~~~~ 170 (534)
T 1llf_A 94 SEDC---LTINVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIK 170 (534)
T ss_dssp CSCC---CEEEEEECTTCCTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHH
T ss_pred CCCC---eEEEEEECCCCCCCCCceEEEEEeCCCcccCCCcccCchHHHHHHHhcCCCEEEEEeCCCCCCCCCCCccccc
Confidence 4555 556777898654456899999999985443332 233211 12233368999999999754 111 1111
Q ss_pred hcccccCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC--------CCceeEEEecCCccccc
Q 003878 588 KGGALAKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQR--------PDLFGCALAHVGVMDML 656 (789)
Q Consensus 588 ~~~~~~~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--------pd~f~a~v~~~p~~d~~ 656 (789)
. .......+.|..++++|+.++ -..||+||.|+|+|+||.+++.++... +.+|+++|+++|.....
T Consensus 171 ~---~~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~l~~~~~~~~~~~~~lf~~ai~~Sg~~~~~ 247 (534)
T 1llf_A 171 A---EGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGAMVPS 247 (534)
T ss_dssp H---HTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCCSCCC
T ss_pred c---cCCCchhHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHhHHHHHHHHcCCCccccccccchhHhHhhhccCcccC
Confidence 1 123345689999999999875 236999999999999999888777653 56899999999843221
Q ss_pred ccccc-cCC---ccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCC-CeEEEEecCCCCCCCcHHHHHHHHH
Q 003878 657 RYHKF-TIG---HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQY-PSTLLLTADHDDRVVPLHSLKLLAT 731 (789)
Q Consensus 657 ~~~~~-~~~---~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~-pp~Li~~g~~D~~V~~~~~~~~~~~ 731 (789)
..... ... .......|++...+..+.|++.++-..++... ..... ..+ ...+.....-|..+.+.++.++.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~gc~~~~~~l~cLr~~~~~~l~~a~~-~~~~~-~~~~~~~~~f~P~~Dg~~l~~~p~~~~~~ 325 (534)
T 1llf_A 248 DPVDGTYGNEIYDLFVSSAGCGSASDKLACLRSASSDTLLDATN-NTPGF-LAYSSLRLSYLPRPDGKNITDDMYKLVRD 325 (534)
T ss_dssp CCTTSHHHHHHHHHHHHHTTCTTCSSHHHHHHHSCHHHHHHHHH-TSCCT-TSTTTTSCSSCCCCCSSSSCSCHHHHHHT
T ss_pred CCcChHHHHHHHHHHHHHhCCCCcHHHHHHHHcCCHHHHHHHHH-hcccc-cccccccccceeecCCccccCCHHHHHHc
Confidence 11100 000 01123457664334455666655432211100 00000 000 0001122334666777777777655
Q ss_pred HHHhhccCCCCCCCCCcEEEEEeCCCCcCCC
Q 003878 732 MQYVLCTSLENSPQTNPIIGRIERKAGHGVG 762 (789)
Q Consensus 732 L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~ 762 (789)
.+.. ++|+.+-...++||.+.
T Consensus 326 g~~~----------~vp~l~G~~~~Eg~~f~ 346 (534)
T 1llf_A 326 GKYA----------SVPVIIGDQNDEGTIFG 346 (534)
T ss_dssp TCSC----------CCCEEEEEETBTTHHHH
T ss_pred CCCC----------CCCEEEEEecCchhhhh
Confidence 4433 78999999999999763
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.18 E-value=9.1e-10 Score=119.54 Aligned_cols=200 Identities=9% Similarity=0.040 Sum_probs=124.6
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...++|+|||+.|+....+ ..|++|++.++. .+..+.. +...+..++++|+++.+++
T Consensus 142 V~~v~~spdg~~l~sgs~d-------------------g~v~iwd~~~~~--~~~~~~~--h~~~v~~v~~s~~~~~~~~ 198 (357)
T 4g56_B 142 VKTLSVFSDGTQAVSGGKD-------------------FSVKVWDLSQKA--VLKSYNA--HSSEVNCVAACPGKDTIFL 198 (357)
T ss_dssp EEEEEECSSSSEEEEEETT-------------------SCEEEEETTTTE--EEEEECC--CSSCEEEEEECTTCSSCEE
T ss_pred EEEEEECCCCCEEEEEeCC-------------------CeEEEEECCCCc--EEEEEcC--CCCCEEEEEEccCCCceee
Confidence 4789999999999865433 248888887642 2223332 3344678899999986665
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
.... ...|.++|+.++.. ........... .....|+|++..+++.... +..|..+|+.+++
T Consensus 199 s~~~----dg~v~~wd~~~~~~-----------~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~---d~~i~~wd~~~~~ 260 (357)
T 4g56_B 199 SCGE----DGRILLWDTRKPKP-----------ATRIDFCASDTIPTSVTWHPEKDDTFACGDE---TGNVSLVNIKNPD 260 (357)
T ss_dssp EEET----TSCEEECCTTSSSC-----------BCBCCCTTCCSCEEEEEECTTSTTEEEEEES---SSCEEEEESSCGG
T ss_pred eecc----CCceEEEECCCCce-----------eeeeeeccccccccchhhhhcccceEEEeec---ccceeEEECCCCc
Confidence 5543 24488889877421 00101111111 1123488886655444332 3578899998876
Q ss_pred CeEEeccCCCCceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeeccc-CCcEEEEEEcCCC
Q 003878 396 DWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR-EDSVVFISFTSFL 473 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~-d~~~l~~~~ss~~ 473 (789)
....+..+. ..+..+++++++ .++++...|+ .|++||+++++..+.+ .....|..++++| ++..|+ +.+
T Consensus 261 ~~~~~~~~~--~~v~~l~~sp~~~~~lasgs~D~--~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~-s~s--- 331 (357)
T 4g56_B 261 SAQTSAVHS--QNITGLAYSYHSSPFLASISEDC--TVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFT-TVG--- 331 (357)
T ss_dssp GCEEECCCS--SCEEEEEECSSSSCCEEEEETTS--CEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEE-EEE---
T ss_pred EeEEEeccc--eeEEEEEEcCCCCCEEEEEeCCC--EEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEE-EEc---
Confidence 444444333 567888998753 6788888887 6889999988765444 3456788899998 566443 433
Q ss_pred CCcEEEEEECCCC
Q 003878 474 IPGIVYQCNLKTE 486 (789)
Q Consensus 474 ~P~~ly~~dl~tg 486 (789)
.-.+++.|++.+.
T Consensus 332 ~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 332 WDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEEECC--
T ss_pred CCCeEEEEECCCC
Confidence 2457888888653
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.7e-09 Score=111.95 Aligned_cols=284 Identities=9% Similarity=0.004 Sum_probs=162.0
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.+..++|||||++||-+. ...+|+|||++++......... ..|.+. ..+..+.|++
T Consensus 18 ~v~~l~~sp~g~~las~~-----~D~~i~iw~~~~~~~~~~~~~~-----~~h~~~----v~~~~~sp~g---------- 73 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCG-----GDRRIRIWGTEGDSWICKSVLS-----EGHQRT----VRKVAWSPCG---------- 73 (345)
T ss_dssp CEEEEEECTTSSCEEEEE-----TTSCEEEEEEETTEEEEEEEEC-----SSCSSC----EEEEEECTTS----------
T ss_pred cEEEEEECCCCCEEEEEc-----CCCeEEEEEcCCCcceeeeeec-----cccCCc----EEEEEECCCC----------
Confidence 356788999999998543 3447999999987532111000 000110 1122334666
Q ss_pred eeEEEeeeccccceeeeeeec------------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVS------------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYH 280 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~------------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (789)
.+++++..+|+..||.... .-....++|+|||+.|+....+ ..|++|
T Consensus 74 --~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D-------------------~~v~iw 132 (345)
T 3fm0_A 74 --NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD-------------------KSVWVW 132 (345)
T ss_dssp --SEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETT-------------------SCEEEE
T ss_pred --CEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECC-------------------CeEEEE
Confidence 4678888999999997643 1124678999999998866433 248888
Q ss_pred ECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc
Q 003878 281 FLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD 360 (789)
Q Consensus 281 ~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 360 (789)
++.+..... .+.....+...+..+.|+|||++|+..+.+ ..|.++++.++. ......+.....
T Consensus 133 d~~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d-----~~i~~w~~~~~~-----------~~~~~~~~~h~~ 195 (345)
T 3fm0_A 133 EVDEEDEYE-CVSVLNSHTQDVKHVVWHPSQELLASASYD-----DTVKLYREEEDD-----------WVCCATLEGHES 195 (345)
T ss_dssp EECTTSCEE-EEEEECCCCSCEEEEEECSSSSCEEEEETT-----SCEEEEEEETTE-----------EEEEEEECCCSS
T ss_pred ECCCCCCeE-EEEEecCcCCCeEEEEECCCCCEEEEEeCC-----CcEEEEEecCCC-----------EEEEEEecCCCC
Confidence 887643221 222222233446789999999998876643 236667765421 011112222112
Q ss_pred cee-EEEecCCCEEEEEECCCCCCceEEEEEC--CCCC----------CeEEe--ccCCCCceeeeEEEecCCEEEEEEE
Q 003878 361 AQY-EVIANDDTVFTFLTNKDAPKYKIIRVDL--KEPN----------DWFEV--IPEAERDVLESATAVNLNQMIVSYL 425 (789)
Q Consensus 361 ~~~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl--~~~~----------~~~~l--~~~~~~~~i~~v~~~~~~~lv~~~~ 425 (789)
... ..|+|+|+.|+..+.. ..|..+++ .+.. .++.+ +.......+..+++++++..+++..
T Consensus 196 ~v~~l~~sp~g~~l~s~s~D----~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~ 271 (345)
T 3fm0_A 196 TVWSLAFDPSGQRLASCSDD----RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATAC 271 (345)
T ss_dssp CEEEEEECTTSSEEEEEETT----SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCC----CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEe
Confidence 122 3489999988765543 34555553 2111 11111 1111224577889988777777777
Q ss_pred eCCeEEEEEEECCCCceee---------ecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 426 SDVKYVLQIRDLKNGSLLH---------QLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 426 ~~g~~~L~~~dl~tG~~~~---------~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.++ .|++|+.+++.... ....+...|..++++|++..++++.+ .-+++..|++.+++
T Consensus 272 ~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s---~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 272 GDD--AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS---DDGEVAFWKYQRPE 337 (345)
T ss_dssp TTS--CEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE---TTSCEEEEEECC--
T ss_pred CCC--eEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC---CCCcEEEEEecCCC
Confidence 777 46666665432100 11123556888999998864555543 34678888887663
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-08 Score=117.17 Aligned_cols=266 Identities=13% Similarity=0.081 Sum_probs=168.4
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..+..++++|||++|+.+.. ...|++||..+. .+. .+... .+... +....|++
T Consensus 263 ~~v~~v~~~~d~~~l~~~~~-----d~~i~~w~~~~~-~~~-~~~~h-------~~~v~----~~~~~~~~--------- 315 (577)
T 2ymu_A 263 SSVNGVAFRPDGQTIASASD-----DKTVKLWNRNGQ-LLQ-TLTGH-------SSSVW----GVAFSPDG--------- 315 (577)
T ss_dssp SCEEEEEECTTSSEEEEEET-----TSCEEEEETTSC-EEE-EECCC-------SSCEE----EEEECTTS---------
T ss_pred CCEEEEEEcCCCCEEEEEeC-----CCEEEEEeCCCc-EEE-EEecC-------CCCeE----EEEECCCC---------
Confidence 35678899999999985443 236899997544 221 11111 01011 11223555
Q ss_pred eeeEEEeeeccccceeeeeeec---------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEEC
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVS---------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFL 282 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~---------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l 282 (789)
..++++..+|+..+|.... ......++|+|||+.|+....+ ..+.+++.
T Consensus 316 ---~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-------------------g~v~~~~~ 373 (577)
T 2ymu_A 316 ---QTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDD-------------------KTVKLWNR 373 (577)
T ss_dssp ---SEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETT-------------------SEEEEEET
T ss_pred ---CEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCC-------------------CEEEEEcC
Confidence 3566777888899997644 1223568999999999876432 24677775
Q ss_pred CCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce
Q 003878 283 GTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ 362 (789)
Q Consensus 283 g~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~ 362 (789)
.. +....+.. +...+..+++||||++|+.... ...|.+++.... ....+.......
T Consensus 374 ~~---~~~~~~~~--~~~~v~~~~~s~dg~~l~~~~~-----d~~v~~~~~~~~--------------~~~~~~~~~~~v 429 (577)
T 2ymu_A 374 NG---QLLQTLTG--HSSSVRGVAFSPDGQTIASASD-----DKTVKLWNRNGQ--------------LLQTLTGHSSSV 429 (577)
T ss_dssp TC---CEEEEEEC--CSSCEEEEEECTTSSCEEEEET-----TSEEEEECTTCC--------------EEEEEECCSSCE
T ss_pred CC---CEEEEecC--CCCCeEEEEECCCCCEEEEEeC-----CCEEEEEeCCCC--------------EEEEecCCCCCe
Confidence 32 22222222 2344678899999999987653 245778875431 122222222222
Q ss_pred e-EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCc
Q 003878 363 Y-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGS 441 (789)
Q Consensus 363 ~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~ 441 (789)
. ..|+||++.|+..+. +..|..+++.+.. ...+..+. ..+..+++++++.++++...++ .|++|+.+ |+
T Consensus 430 ~~~~~s~d~~~l~~~~~----d~~v~~w~~~~~~-~~~~~~~~--~~v~~~~~spd~~~las~~~d~--~i~iw~~~-~~ 499 (577)
T 2ymu_A 430 WGVAFSPDDQTIASASD----DKTVKLWNRNGQL-LQTLTGHS--SSVRGVAFSPDGQTIASASDDK--TVKLWNRN-GQ 499 (577)
T ss_dssp EEEEECTTSSEEEEEET----TSEEEEEETTSCE-EEEEECCS--SCEEEEEECTTSCEEEEEETTS--EEEEEETT-SC
T ss_pred EEEEECCCCCEEEEEcC----CCEEEEEECCCCE-EEEEcCCC--CCEEEEEEcCCCCEEEEEeCCC--EEEEEcCC-CC
Confidence 2 348999998876543 3578888976543 44555554 4578899998778888888887 68889975 77
Q ss_pred eeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 442 LLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 442 ~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
..+.+..+...|..+.++|+++.|+... .-..++.||..
T Consensus 500 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~----~dg~v~lwd~~ 538 (577)
T 2ymu_A 500 LLQTLTGHSSSVRGVAFSPDGQTIASAS----DDKTVKLWNRN 538 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSCEEEEE----TTSEEEEECTT
T ss_pred EEEEEeCCCCCEEEEEEcCCCCEEEEEE----CcCEEEEEeCC
Confidence 7677776677788899999998765432 23578999863
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-08 Score=109.88 Aligned_cols=226 Identities=10% Similarity=0.028 Sum_probs=144.4
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec---ccccccccccccCccceeeeeeccccccccccccccc
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA---DALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
.+..+.+||||++||.+. ....|++||+.+++... ..+... .+
T Consensus 99 ~v~~~~~s~~~~~l~s~~-----~d~~v~iw~~~~~~~~~~~~~~~~~h-------~~---------------------- 144 (340)
T 1got_B 99 WVMTCAYAPSGNYVACGG-----LDNICSIYNLKTREGNVRVSRELAGH-------TG---------------------- 144 (340)
T ss_dssp CEEEEEECTTSSEEEEEE-----TTCEEEEEETTTCSBSCEEEEEEECC-------SS----------------------
T ss_pred cEEEEEECCCCCEEEEEe-----CCCeEEEEECccCCCcceeEEEecCC-------Cc----------------------
Confidence 367788999999998543 24589999998864211 111110 00
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
....+.|+||++ |+.... ...|.+|++.+.. .
T Consensus 145 --------------------------~v~~~~~~~~~~-l~s~s~-------------------d~~i~~wd~~~~~--~ 176 (340)
T 1got_B 145 --------------------------YLSCCRFLDDNQ-IVTSSG-------------------DTTCALWDIETGQ--Q 176 (340)
T ss_dssp --------------------------CEEEEEEEETTE-EEEEET-------------------TSCEEEEETTTTE--E
T ss_pred --------------------------cEEEEEECCCCc-EEEEEC-------------------CCcEEEEECCCCc--E
Confidence 135688999886 544332 2348888987643 2
Q ss_pred EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce-eEEEec
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEVIAN 368 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~ 368 (789)
+..+.. +...+..+.|+|||++++....+ ..|.++|+.++. ....+....... ...|+|
T Consensus 177 ~~~~~~--h~~~v~~~~~~~~~~~l~sg~~d-----~~v~~wd~~~~~-------------~~~~~~~h~~~v~~v~~~p 236 (340)
T 1got_B 177 TTTFTG--HTGDVMSLSLAPDTRLFVSGACD-----ASAKLWDVREGM-------------CRQTFTGHESDINAICFFP 236 (340)
T ss_dssp EEEECC--CSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCS-------------EEEEECCCSSCEEEEEECT
T ss_pred EEEEcC--CCCceEEEEECCCCCEEEEEeCC-----CcEEEEECCCCe-------------eEEEEcCCcCCEEEEEEcC
Confidence 223332 33446789999999988765533 448889988742 122222211112 234899
Q ss_pred CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc
Q 003878 369 DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI 448 (789)
Q Consensus 369 dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~ 448 (789)
+|+.|+..+. ++.|..+|+.+++....+..+.....+..+.+++++.++++...++ .|.+||+.+++....+..
T Consensus 237 ~~~~l~s~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~--~i~vwd~~~~~~~~~~~~ 310 (340)
T 1got_B 237 NGNAFATGSD----DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF--NCNVWDALKADRAGVLAG 310 (340)
T ss_dssp TSSEEEEEET----TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS--EEEEEETTTCCEEEEEEC
T ss_pred CCCEEEEEcC----CCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCC--eEEEEEcccCcEeeEeec
Confidence 9998775443 3578889998765222222222223578889998778888888887 799999987776666665
Q ss_pred CCeeEEEeecccCCcEEE
Q 003878 449 EIGSVNAISARREDSVVF 466 (789)
Q Consensus 449 ~~~~v~~~s~s~d~~~l~ 466 (789)
+.+.|..+++++++..++
T Consensus 311 h~~~v~~~~~s~dg~~l~ 328 (340)
T 1got_B 311 HDNRVSCLGVTDDGMAVA 328 (340)
T ss_dssp CSSCEEEEEECTTSSCEE
T ss_pred CCCcEEEEEEcCCCCEEE
Confidence 667788889999988655
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.15 E-value=6.1e-09 Score=115.45 Aligned_cols=239 Identities=9% Similarity=-0.044 Sum_probs=152.5
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..|..++|||||++||.+. ...+|++||+++++.+.. +... .+....+. +++
T Consensus 148 ~~V~sv~fspdg~~lasgs-----~Dg~v~iWd~~~~~~~~~-~~~h-------~~~v~~~s------~~~--------- 199 (420)
T 4gga_A 148 EYISSVAWIKEGNYLAVGT-----SSAEVQLWDVQQQKRLRN-MTSH-------SARVGSLS------WNS--------- 199 (420)
T ss_dssp CCEEEEEECTTSSEEEEEE-----TTSCEEEEETTTTEEEEE-ECCC-------SSCEEEEE------EET---------
T ss_pred CcEEEEEECCCCCEEEEEE-----CCCeEEEEEcCCCcEEEE-EeCC-------CCceEEEe------eCC---------
Confidence 4588999999999998543 344799999999976531 1111 01000010 111
Q ss_pred eeeEEEeeeccccceeeeeeec-----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVS-----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYH 280 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~-----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (789)
.++.++..++...+|.... .-......|+|+|+.++....+ ..+.++
T Consensus 200 ---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D-------------------~~v~i~ 257 (420)
T 4gga_A 200 ---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND-------------------NLVNVW 257 (420)
T ss_dssp ---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------------SCEEEE
T ss_pred ---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeecc-------------------ccceEE
Confidence 3567777888888876543 1123568899999988866443 247777
Q ss_pred ECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc
Q 003878 281 FLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD 360 (789)
Q Consensus 281 ~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 360 (789)
++.+.......+.....+...+..+.|+|++..++....... ...|.++|+.++. ....+.....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~--D~~I~iwd~~t~~-------------~~~~~~~~~~ 322 (420)
T 4gga_A 258 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS--DRHIRIWNVCSGA-------------CLSAVDAHSQ 322 (420)
T ss_dssp ESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT--TCEEEEEETTTTE-------------EEEEEECSSC
T ss_pred eeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecC--CCEEEEEeCCccc-------------cceeeccccc
Confidence 776554322222222223344667899999888876654322 4568999998752 1222222222
Q ss_pred ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCC
Q 003878 361 AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNG 440 (789)
Q Consensus 361 ~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG 440 (789)
.....|+++++.++..+.. .++.|.++|+.+++....+..|. ..+..+++++++.++++...|+ .|++||+.+.
T Consensus 323 v~~~~~~~~~~~lv~~sg~--~d~~I~iwd~~~~~~v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~--tvriWdv~~~ 396 (420)
T 4gga_A 323 VCSILWSPHYKELISGHGF--AQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADE--TLRLWRCFEL 396 (420)
T ss_dssp EEEEEEETTTTEEEEEECT--TTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTT--EEEEECCSCS
T ss_pred eeeeeecCCCCeEEEEEec--CCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCC--eEEEEECCCC
Confidence 2334589999998876543 34679999998887455555554 5688999999778888888887 6888998644
Q ss_pred c
Q 003878 441 S 441 (789)
Q Consensus 441 ~ 441 (789)
.
T Consensus 397 ~ 397 (420)
T 4gga_A 397 D 397 (420)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-08 Score=110.88 Aligned_cols=227 Identities=12% Similarity=0.035 Sum_probs=145.7
Q ss_pred EEEeeeccccceeeeeeec----c-----------cccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEE
Q 003878 215 FYLFSLVKSTIYSFWSVVS----Q-----------FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYY 279 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~----~-----------~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (789)
++++.+..++...+|.+.. + -....++|+|||+.++ +.. ....|++
T Consensus 135 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-s~~------------------~d~~v~~ 195 (433)
T 3bws_A 135 RLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWV-SQM------------------QANAVHV 195 (433)
T ss_dssp EEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEE-EEG------------------GGTEEEE
T ss_pred eEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEE-EEC------------------CCCEEEE
Confidence 5777777888888887653 1 0234589998886554 422 2346899
Q ss_pred EECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc
Q 003878 280 HFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF 359 (789)
Q Consensus 280 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~ 359 (789)
+++.+... +..+.. +......++|+|||+++++.... ...|+++|+.++. ....+....
T Consensus 196 ~d~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~----~~~i~~~d~~~~~-------------~~~~~~~~~ 254 (433)
T 3bws_A 196 FDLKTLAY--KATVDL--TGKWSKILLYDPIRDLVYCSNWI----SEDISVIDRKTKL-------------EIRKTDKIG 254 (433)
T ss_dssp EETTTCCE--EEEEEC--SSSSEEEEEEETTTTEEEEEETT----TTEEEEEETTTTE-------------EEEECCCCS
T ss_pred EECCCceE--EEEEcC--CCCCeeEEEEcCCCCEEEEEecC----CCcEEEEECCCCc-------------EEEEecCCC
Confidence 99876432 222222 22345678999999999776532 3569999998742 111111111
Q ss_pred cceeEEEecCCCEEEEEECCCC----CCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCC-EEEEEEEeCCeEEEEE
Q 003878 360 DAQYEVIANDDTVFTFLTNKDA----PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQI 434 (789)
Q Consensus 360 ~~~~~~~s~dG~~l~~~tn~~~----~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~ 434 (789)
......|+|+|+.+++.+.... .++.|+.+|+.+++ ....+.+. ..+..+.+++++ .+++....++ .|++
T Consensus 255 ~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~-~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~--~v~v 329 (433)
T 3bws_A 255 LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEK-LIDTIGPP--GNKRHIVSGNTENKIYVSDMCCS--KIEV 329 (433)
T ss_dssp EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTE-EEEEEEEE--ECEEEEEECSSTTEEEEEETTTT--EEEE
T ss_pred CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCc-EEeeccCC--CCcceEEECCCCCEEEEEecCCC--EEEE
Confidence 1223458999998887664321 35789999998775 33333322 245678888754 5777666665 7999
Q ss_pred EECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCC-----------cEEEEEECCCCC
Q 003878 435 RDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIP-----------GIVYQCNLKTET 487 (789)
Q Consensus 435 ~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P-----------~~ly~~dl~tg~ 487 (789)
||+++++....+.. ...+..+.++++++.+++.......+ +.++.||+.+++
T Consensus 330 ~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 330 YDLKEKKVQKSIPV-FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EECCCCcEEEEecC-CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 99998876555543 34466788999999887765543322 599999998884
|
| >4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-09 Score=117.42 Aligned_cols=122 Identities=15% Similarity=0.081 Sum_probs=89.3
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcC---------CeEEEEEeecCCCCCChh
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHL---------GAVFCIANIRGGGEYGEE 585 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~---------G~~v~~~~~RG~g~~g~~ 585 (789)
..|| .+|++..+.+.+ +..|.||++||.+++... |.. ....|.+. ||.|+++|.||.|....
T Consensus 74 ~i~g-~~i~~~~~~~~~----~~~~plll~HG~~~s~~~--~~~-~~~~L~~~~~~~~~~~~~~~vi~~dl~G~G~S~~- 144 (388)
T 4i19_A 74 EIDG-ATIHFLHVRSPE----PDATPMVITHGWPGTPVE--FLD-IIGPLTDPRAHGGDPADAFHLVIPSLPGFGLSGP- 144 (388)
T ss_dssp EETT-EEEEEEEECCSS----TTCEEEEEECCTTCCGGG--GHH-HHHHHHCGGGGTSCGGGCEEEEEECCTTSGGGCC-
T ss_pred EECC-eEEEEEEccCCC----CCCCeEEEECCCCCCHHH--HHH-HHHHHhCcccccCCCCCCeEEEEEcCCCCCCCCC-
Confidence 3489 999877665543 456789999998776433 333 34566634 99999999999774321
Q ss_pred HHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 586 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 586 ~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
......+++++.+.+..|++. ...++++++|||+||.++..++.++|++++++|+..|+.
T Consensus 145 ------~~~~~~~~~~~a~~~~~l~~~--lg~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 204 (388)
T 4i19_A 145 ------LKSAGWELGRIAMAWSKLMAS--LGYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLLQT 204 (388)
T ss_dssp ------CSSCCCCHHHHHHHHHHHHHH--TTCSSEEEEESTHHHHHHHHHHHHCGGGEEEEEESSCCC
T ss_pred ------CCCCCCCHHHHHHHHHHHHHH--cCCCcEEEEeccHHHHHHHHHHHhChhhceEEEEecCCC
Confidence 111134677777777777665 233589999999999999999999999999999988643
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.2e-09 Score=110.96 Aligned_cols=283 Identities=6% Similarity=-0.033 Sum_probs=165.5
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccc---ccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPT---YKLFLYL 208 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~~~ 208 (789)
..+..+++||||++++.+.+.. +....|++||+.+++......... .+. ..+..+.|+ +
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~-~~d~~v~iw~~~~~~~~~~~~~~~-------~~~----v~~~~~~~~~~~~------ 80 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFA-RGTGVIQLYEIQHGDLKLLREIEK-------AKP----IKCGTFGATSLQQ------ 80 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC---CCCEEEEEEEECSSSEEEEEEEEE-------SSC----EEEEECTTCCTTT------
T ss_pred CceEEEEEcCCCceEEEecCcc-CCCcEEEEEeCCCCcccceeeecc-------cCc----EEEEEEcCCCCCC------
Confidence 4578899999998887654321 125689999999986542111000 000 111222343 3
Q ss_pred ccceeeEEEeeeccccceeeeeeec-----------ccccceE------EEEeCCcEEEEEEccCCCCCCCCCCCccccC
Q 003878 209 RGIFFFFYLFSLVKSTIYSFWSVVS-----------QFKFSSI------AWTHDSKGFFYSRYPAPKEGKDMDAGTETDS 271 (789)
Q Consensus 209 ~~~~~~~~~~~s~~~g~~~l~~~~~-----------~~~~~~~------~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~ 271 (789)
.+++++..+|...+|.+.. .-....+ +|+||++.|+....+
T Consensus 81 ------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d---------------- 138 (357)
T 3i2n_A 81 ------RYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRD---------------- 138 (357)
T ss_dssp ------CCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETT----------------
T ss_pred ------ceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCC----------------
Confidence 4677888899999998764 1112344 457899988866433
Q ss_pred CcccEEEEEECCCCCCCcEEEEecCCC--CeeEEEEE----EecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccc
Q 003878 272 NLYHEFYYHFLGTKQSEDILCWKDPEH--PKYIFSGH----VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 345 (789)
Q Consensus 272 ~~~~~i~~~~lg~~~~~~~~~~~~~~~--~~~~~~~~----~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 345 (789)
..|.+|++.+.... ...+..... ...+..+. ++|++++++.... ...|+++|+.++.
T Consensus 139 ---~~i~vwd~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~-------- 201 (357)
T 3i2n_A 139 ---GTVKVWDPRQKDDP-VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD-----NGDIKLFDLRNMA-------- 201 (357)
T ss_dssp ---SCEEEECTTSCSSC-SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET-----TSEEEEEETTTTE--------
T ss_pred ---CeEEEEeCCCCCCc-ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc-----CCeEEEEECccCc--------
Confidence 24888888765422 223322111 12344455 7899999987653 3468999998742
Q ss_pred cCCCCccEeeec-cccceeEEEec---CCCEEEEEECCCCCCceEEEEECCCCCCeEEec---cCCCCceeeeEEEecCC
Q 003878 346 RDGLLPFVKLID-GFDAQYEVIAN---DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVI---PEAERDVLESATAVNLN 418 (789)
Q Consensus 346 ~~~~~~~~~l~~-~~~~~~~~~s~---dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~---~~~~~~~i~~v~~~~~~ 418 (789)
...... ........|+| +++.|+..+. ++.|..+|+.++.....+. .......+..+.+++++
T Consensus 202 ------~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 271 (357)
T 3i2n_A 202 ------LRWETNIKNGVCSLEFDRKDISMNKLVATSL----EGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQN 271 (357)
T ss_dssp ------EEEEEECSSCEEEEEESCSSSSCCEEEEEES----TTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTE
T ss_pred ------eeeecCCCCceEEEEcCCCCCCCCEEEEECC----CCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCC
Confidence 111111 11112234888 8888776543 3578888876543111111 01123567889999865
Q ss_pred E-EEEEEEeCCeEEEEEEECCCCce-------------------eeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEE
Q 003878 419 Q-MIVSYLSDVKYVLQIRDLKNGSL-------------------LHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIV 478 (789)
Q Consensus 419 ~-lv~~~~~~g~~~L~~~dl~tG~~-------------------~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~l 478 (789)
. ++++...++ .|++|++.++.. +..+......+..++++++++.++++.+ .-+.+
T Consensus 272 ~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~---~d~~i 346 (357)
T 3i2n_A 272 RELFLTAGGAG--GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSS---FDQTV 346 (357)
T ss_dssp EEEEEEEETTS--EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEE---TTSEE
T ss_pred CcEEEEEeCCC--cEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEec---CCCcE
Confidence 5 788888887 677788764432 1223333556778899999987775543 24688
Q ss_pred EEEECCCC
Q 003878 479 YQCNLKTE 486 (789)
Q Consensus 479 y~~dl~tg 486 (789)
+.||+.+.
T Consensus 347 ~iw~~~~~ 354 (357)
T 3i2n_A 347 RVLIVTKL 354 (357)
T ss_dssp EEEEECC-
T ss_pred EEEECCCc
Confidence 88888654
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.4e-09 Score=115.91 Aligned_cols=240 Identities=10% Similarity=-0.013 Sum_probs=152.4
Q ss_pred EeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceee
Q 003878 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFF 214 (789)
Q Consensus 135 ~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 214 (789)
..+++||||++|+.+.. . ..|++||+.+++... .+....
T Consensus 60 ~~~~~s~~g~~l~~~~~-d----~~v~i~d~~~~~~~~-~~~~~~----------------------------------- 98 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARL-D----GHDFLFNTIIRDGSK-MLKRAD----------------------------------- 98 (420)
T ss_dssp TTCEEEEEETTEEEEEE-T----TEEEEEECCSEETTT-TSCSCC-----------------------------------
T ss_pred cceeeeecCCeEEEEEc-C----CcEEEEEecccceee-EEecCC-----------------------------------
Confidence 35789999999986654 2 379999999875432 111110
Q ss_pred EEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEe
Q 003878 215 FYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK 294 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~ 294 (789)
......|+|||+.|+....+ ..|.+|++.+.. .+..
T Consensus 99 ---------------------~~~~~~~~~~~~~l~~~~~d-------------------g~i~iwd~~~~~----~~~~ 134 (420)
T 3vl1_A 99 ---------------------YTAVDTAKLQMRRFILGTTE-------------------GDIKVLDSNFNL----QREI 134 (420)
T ss_dssp ---------------------EEEEEEECSSSCEEEEEETT-------------------SCEEEECTTSCE----EEEE
T ss_pred ---------------------ceEEEEEecCCCEEEEEECC-------------------CCEEEEeCCCcc----eeee
Confidence 12455789999998876433 247888876432 2222
Q ss_pred cCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCCEE
Q 003878 295 DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVF 373 (789)
Q Consensus 295 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~~l 373 (789)
...+...+..+.|+|||++|+..+. ...|.++|+.++. ....+........ ..|+|+|+.|
T Consensus 135 ~~~h~~~v~~~~~~~~~~~l~s~s~-----d~~i~iwd~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~l 196 (420)
T 3vl1_A 135 DQAHVSEITKLKFFPSGEALISSSQ-----DMQLKIWSVKDGS-------------NPRTLIGHRATVTDIAIIDRGRNV 196 (420)
T ss_dssp TTSSSSCEEEEEECTTSSEEEEEET-----TSEEEEEETTTCC-------------CCEEEECCSSCEEEEEEETTTTEE
T ss_pred cccccCccEEEEECCCCCEEEEEeC-----CCeEEEEeCCCCc-------------CceEEcCCCCcEEEEEEcCCCCEE
Confidence 2234455778999999998876653 3568999998742 1222322222222 3489999988
Q ss_pred EEEECCCCCCceEEEEECCCCCCeEEeccCC-CCceeee---------------------EEEecCCEEEEEEEeCCeEE
Q 003878 374 TFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-ERDVLES---------------------ATAVNLNQMIVSYLSDVKYV 431 (789)
Q Consensus 374 ~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~-~~~~i~~---------------------v~~~~~~~lv~~~~~~g~~~ 431 (789)
+..+. +..|..+|+.+++....+..+. ....+.. +.+++++.++++...++ .
T Consensus 197 ~s~~~----d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~ 270 (420)
T 3vl1_A 197 LSASL----DGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSG--V 270 (420)
T ss_dssp EEEET----TSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTS--C
T ss_pred EEEcC----CCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCC--e
Confidence 75443 3568889998775233332211 1122333 33455567888888887 6
Q ss_pred EEEEECCCCceeeecccC-CeeEEEeecccCCc-EEEEEEcCCCCCcEEEEEECCCCC
Q 003878 432 LQIRDLKNGSLLHQLPIE-IGSVNAISARREDS-VVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 432 L~~~dl~tG~~~~~l~~~-~~~v~~~s~s~d~~-~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
|.+||+.+++....+... ...+..+.+++++. .++... .-+.++.||+.+++
T Consensus 271 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~----~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 271 ITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY----ENGMLAQWDLRSPE 324 (420)
T ss_dssp EEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE----TTSEEEEEETTCTT
T ss_pred EEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe----CCCeEEEEEcCCCc
Confidence 899999887765555433 56688889999988 544332 23689999998875
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-08 Score=118.18 Aligned_cols=309 Identities=9% Similarity=0.002 Sum_probs=172.3
Q ss_pred EeCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCC
Q 003878 88 KRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED 167 (789)
Q Consensus 88 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~t 167 (789)
++|+.+.+-. + .. +++.+..+++....+. ++...+..+++||||++||- |+...+|+|||+.+
T Consensus 28 pdg~~l~~~~---~-~~--v~l~~~~~~~~~~~~~------~h~~~v~~~~~spdg~~las-----g~~d~~v~lWd~~~ 90 (611)
T 1nr0_A 28 PAGDKIQYCN---G-TS--VYTVPVGSLTDTEIYT------EHSHQTTVAKTSPSGYYCAS-----GDVHGNVRIWDTTQ 90 (611)
T ss_dssp TTSSEEEEEE---T-TE--EEEEETTCSSCCEEEC------CCSSCEEEEEECTTSSEEEE-----EETTSEEEEEESSS
T ss_pred CCCCEEEeCC---C-CE--EEEecCCCcccCeEec------CCCCceEEEEECCCCcEEEE-----EeCCCCEEEeECCC
Confidence 4677777643 1 22 4444433333322221 23345788999999999994 33345899999987
Q ss_pred Cceec-ccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeecc---ccceeeeeeec--------cc
Q 003878 168 QIVEA-DALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVK---STIYSFWSVVS--------QF 235 (789)
Q Consensus 168 g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~---~g~~~l~~~~~--------~~ 235 (789)
++... ..+... .+ -..+..+.|+++ .++..++. .+...+|...- .-
T Consensus 91 ~~~~~~~~~~~~-------~~----~v~~v~fs~dg~-----------~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~ 148 (611)
T 1nr0_A 91 TTHILKTTIPVF-------SG----PVKDISWDSESK-----------RIAAVGEGRERFGHVFLFDTGTSNGNLTGQAR 148 (611)
T ss_dssp TTCCEEEEEECS-------SS----CEEEEEECTTSC-----------EEEEEECCSSCSEEEEETTTCCBCBCCCCCSS
T ss_pred CcceeeEeeccc-------CC----ceEEEEECCCCC-----------EEEEEECCCCceeEEEEeeCCCCcceecCCCC
Confidence 64321 111110 01 012233446764 33433332 24556664321 11
Q ss_pred ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 236 ~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
....++|+||++..+.+.. ....|.+|+..+. +....+. .+...+..++|||||++|+
T Consensus 149 ~v~~v~f~p~~~~~l~s~s------------------~D~~v~lwd~~~~--~~~~~l~--~H~~~V~~v~fspdg~~la 206 (611)
T 1nr0_A 149 AMNSVDFKPSRPFRIISGS------------------DDNTVAIFEGPPF--KFKSTFG--EHTKFVHSVRYNPDGSLFA 206 (611)
T ss_dssp CEEEEEECSSSSCEEEEEE------------------TTSCEEEEETTTB--EEEEEEC--CCSSCEEEEEECTTSSEEE
T ss_pred CceEEEECCCCCeEEEEEe------------------CCCeEEEEECCCC--eEeeeec--cccCceEEEEECCCCCEEE
Confidence 2468999999985444422 1234778876542 1122233 3445677899999999988
Q ss_pred EEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-------cccccee-EEEecCCCEEEEEECCCCCCceEE
Q 003878 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-------DGFDAQY-EVIANDDTVFTFLTNKDAPKYKII 387 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-------~~~~~~~-~~~s~dG~~l~~~tn~~~~~~~L~ 387 (789)
..+.+ ..|.++|+.++.. ...+. ....... ..|+|||+.|+..+. +..|.
T Consensus 207 s~s~D-----~~i~lwd~~~g~~-------------~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~----D~~v~ 264 (611)
T 1nr0_A 207 STGGD-----GTIVLYNGVDGTK-------------TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA----DKTIK 264 (611)
T ss_dssp EEETT-----SCEEEEETTTCCE-------------EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET----TSEEE
T ss_pred EEECC-----CcEEEEECCCCcE-------------eeeeccccccccccCCCEEEEEECCCCCEEEEEeC----CCeEE
Confidence 66533 3488889876421 11110 1111122 348999998775443 35677
Q ss_pred EEECCCCCCeEEec-----------------------------------------cCCCCceeeeEEEecCCEEEEEEEe
Q 003878 388 RVDLKEPNDWFEVI-----------------------------------------PEAERDVLESATAVNLNQMIVSYLS 426 (789)
Q Consensus 388 ~~dl~~~~~~~~l~-----------------------------------------~~~~~~~i~~v~~~~~~~lv~~~~~ 426 (789)
.+|+.+++....+. .......+..+++++++..+++...
T Consensus 265 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~ 344 (611)
T 1nr0_A 265 IWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA 344 (611)
T ss_dssp EEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeC
Confidence 77876543111110 0111245678889887778888888
Q ss_pred CCeEEEEEEECCCCceeeecc-cCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 427 DVKYVLQIRDLKNGSLLHQLP-IEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 427 ~g~~~L~~~dl~tG~~~~~l~-~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
++ .|++||+.+|+..+.+. .+...+..+.+++++. ++ +.+ .-..+..++..++
T Consensus 345 D~--~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~-l~-s~s---~d~~v~~w~~~~~ 398 (611)
T 1nr0_A 345 EG--HINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LF-TVS---WDDHLKVVPAGGS 398 (611)
T ss_dssp TS--CEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EE-EEE---TTTEEEEECSSSS
T ss_pred CC--cEEEEECCCCceeeecccCCcceEEEEEECCCCc-EE-EEE---cCCceEEeecCCc
Confidence 87 78899998887644332 2355677777776654 32 222 2346777777654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.12 E-value=8.7e-09 Score=123.24 Aligned_cols=208 Identities=12% Similarity=0.018 Sum_probs=131.0
Q ss_pred ceEEEE-eCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCC-CC-CcEEEEecCCCCeeEEEEEEecCCcEE
Q 003878 238 SSIAWT-HDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTK-QS-EDILCWKDPEHPKYIFSGHVTEDGQYL 314 (789)
Q Consensus 238 ~~~~ws-pDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~-~~-~~~~~~~~~~~~~~~~~~~~SpDG~~l 314 (789)
.+++|| |||+.|+|+.... .....+||+.++.++ .. .+.+ .. ...++.|||||+.|
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~--------------G~~~~~l~v~dl~~g~~~l~~~~--~~-----~~~~~~WspDg~~l 235 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMS--------------GNEVYTIEFKRISDPSQTIADKV--SG-----TNGEIVWGPDHTSL 235 (751)
T ss_dssp EEEEECTTTTCEEEEEEESS--------------SSSCEEEEEEETTCTTCCCCCCE--EE-----ECSCCEECSSTTEE
T ss_pred eeeEecCCCCCEEEEEEeCC--------------CCceEEEEEEECCCCCEeCCccc--cC-----ceeeEEEecCCCEE
Confidence 679999 9999999997642 223457999999876 31 1111 11 11357899999999
Q ss_pred EEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc--c-ceeEEEecCCCEEEEEECCCCCCceEEEEEC
Q 003878 315 VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF--D-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDL 391 (789)
Q Consensus 315 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~--~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl 391 (789)
++...+......+||+.++.++... -..+..+. . .....|||||++|++.++.. ...+|+++|+
T Consensus 236 ~y~~~d~~~~~~~v~~~~lgt~~~~------------~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~-~~~~l~~~d~ 302 (751)
T 2xe4_A 236 FYVTKDETLRENKVWRHVMGKLQSE------------DVCLYEEHNPLFSAFMYKAADTNTLCIGSQSP-ETAEVHLLDL 302 (751)
T ss_dssp EEEEECTTCCEEEEEEEETTSCGGG------------CEEEEECCCTTCEEEEEECTTSSEEEEEEECS-SCEEEEEEES
T ss_pred EEEEECCCCCCCEEEEEECCCCchh------------cEEEEecCCCceEEEEEECCCCCEEEEEecCC-CCceEEEEEC
Confidence 9987654333468999999874210 01121111 1 12245999999999988754 4689999999
Q ss_pred CCCC-Ce--EEeccCCCCceeeeEEEecCCEEEEEEEeC--CeEEEEEEECCCCceeee--cccC-CeeEEEeecccCCc
Q 003878 392 KEPN-DW--FEVIPEAERDVLESATAVNLNQMIVSYLSD--VKYVLQIRDLKNGSLLHQ--LPIE-IGSVNAISARREDS 463 (789)
Q Consensus 392 ~~~~-~~--~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~--g~~~L~~~dl~tG~~~~~--l~~~-~~~v~~~s~s~d~~ 463 (789)
+++. .+ +.+++... ....++.+..++.+++....+ +..+|++++++++...+. ++.. ...+..+++ .++
T Consensus 303 ~~~~~~~~~~~l~~~~~-~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~ 379 (751)
T 2xe4_A 303 RKGNAHNTLEIVRPREK-GVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSN 379 (751)
T ss_dssp SSCTTCCCEEESSCCCT-TCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSS
T ss_pred CCCCCCceeEEeecCCC-CceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECC
Confidence 8763 35 66666442 223334434457888887775 456999999975322233 3322 223444443 466
Q ss_pred EEEEEEcCCCCCcEEEEEEC
Q 003878 464 VVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 464 ~l~~~~ss~~~P~~ly~~dl 483 (789)
.+++++.. .....++++++
T Consensus 380 ~lv~~~~~-~g~~~l~~~dl 398 (751)
T 2xe4_A 380 YLVVAGRR-AGLTRIWTMMA 398 (751)
T ss_dssp EEEEEEEE-TTEEEEEEEEC
T ss_pred EEEEEEEe-CCEEEEEEEec
Confidence 77776643 34568899986
|
| >2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-11 Score=139.24 Aligned_cols=221 Identities=19% Similarity=0.158 Sum_probs=129.5
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCC---ccCCCCCCHHHHHHHHcCC-eEEEEEeecCCC-CCChhHHhc
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFN---ISVTPSFSVSRTILMRHLG-AVFCIANIRGGG-EYGEEWHKG 589 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~---~~~~~~~~~~~~~~l~~~G-~~v~~~~~RG~g-~~g~~~~~~ 589 (789)
+.|+ ..+ .++.|+. ..++.|+||++|||.. ......+.. ..+.. +| ++|+.+|||.+. +|+..-...
T Consensus 81 ~edc-l~l--~v~~P~~--~~~~~Pviv~iHGGg~~~g~~~~~~~~~--~~la~-~~~~vvv~~nYRlg~~Gf~~~~~~~ 152 (498)
T 2ogt_A 81 SEDG-LYL--NIWSPAA--DGKKRPVLFWIHGGAFLFGSGSSPWYDG--TAFAK-HGDVVVVTINYRMNVFGFLHLGDSF 152 (498)
T ss_dssp BSCC-CEE--EEEESCS--SSCCEEEEEEECCSTTTSCCTTCGGGCC--HHHHH-HHTCEEEEECCCCHHHHCCCCTTTT
T ss_pred CCCC-cEE--EEEecCC--CCCCCcEEEEEcCCccCCCCCCCCcCCH--HHHHh-CCCEEEEeCCCcCchhhccCchhhc
Confidence 5677 444 5567863 3467899999999963 332222332 34444 55 999999999421 222110000
Q ss_pred --ccccCCcchHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhC--CCceeEEEecCCcccc-ccccc-
Q 003878 590 --GALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQR--PDLFGCALAHVGVMDM-LRYHK- 660 (789)
Q Consensus 590 --~~~~~~~~~~~D~~~~~~~L~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--pd~f~a~v~~~p~~d~-~~~~~- 660 (789)
.....+...+.|.+++++|+.++- ..||+||.|+|+|+||.+++.++... +.+|+++|+++|..+. .....
T Consensus 153 ~~~~~~~~n~gl~D~~~al~wv~~~i~~fggdp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~ 232 (498)
T 2ogt_A 153 GEAYAQAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAMLQSGSGSLLLRSPET 232 (498)
T ss_dssp CGGGTTGGGHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTTTTCBCHHH
T ss_pred cccccCCCCcccHHHHHHHHHHHHHHHHhCCCCCeEEEEEECHHHHHHHHHHhcccccchhheeeeccCCccccccCHHH
Confidence 011223445899999999998762 25999999999999999998887753 4689999999997662 11110
Q ss_pred -ccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccC
Q 003878 661 -FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTS 739 (789)
Q Consensus 661 -~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~ 739 (789)
...........|++. +..+.|++.++...+.... ... ......|+ -|..+.+.++.++.+.-+..
T Consensus 233 ~~~~~~~~~~~~gc~~--~~~~~Lr~~~~~~l~~~~~-~~~-~~~~f~Pv------vDg~~lp~~p~~~~~~g~~~---- 298 (498)
T 2ogt_A 233 AMAMTERILDKAGIRP--GDRERLLSIPAEELLRAAL-SLG-PGVMYGPV------VDGRVLRRHPIEALRYGAAS---- 298 (498)
T ss_dssp HHHHHHHHHHHHTCCT--TCHHHHHHSCHHHHHHHHH-TTT-TSCCCCCB------CCSSSCCSCHHHHHHTTTTT----
T ss_pred HHHHHHHHHHHhCCCH--HHHHHHHcCCHHHHHHHHh-hcc-CCCceeee------eCCcccccCHHHHHhcCCCC----
Confidence 000111223456652 2234455554433221110 000 00012343 35556666666555433323
Q ss_pred CCCCCCCCcEEEEEeCCCCcCCCC
Q 003878 740 LENSPQTNPIIGRIERKAGHGVGL 763 (789)
Q Consensus 740 ~~~~~~~~~~~l~~~~~~gH~~~~ 763 (789)
++|+.+-...++|+.+..
T Consensus 299 ------~vp~liG~~~~Eg~~f~~ 316 (498)
T 2ogt_A 299 ------GIPILIGVTKDEYNLFTL 316 (498)
T ss_dssp ------TCCEEEEEETTHHHHTTT
T ss_pred ------CCCEEEEEeccchhhhhc
Confidence 789999999999997754
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-08 Score=111.49 Aligned_cols=247 Identities=8% Similarity=-0.015 Sum_probs=148.8
Q ss_pred EEEeEEeCCCC-cEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 133 ALIKVSVSEDA-KYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 133 ~~~~~~~SpDg-~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
.+..+++|||| ++||.+.. ..+|++||+.+++.... +... .+.+
T Consensus 75 ~v~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~-~~~~-----~h~~------------------------ 119 (383)
T 3ei3_B 75 RVTSLEWHPTHPTTVAVGSK-----GGDIILWDYDVQNKTSF-IQGM-----GPGD------------------------ 119 (383)
T ss_dssp CEEEEEECSSCTTEEEEEEB-----TSCEEEEETTSTTCEEE-ECCC-----STTC------------------------
T ss_pred CEEEEEECCCCCCEEEEEcC-----CCeEEEEeCCCccccee-eecC-----CcCC------------------------
Confidence 46788999999 77775433 33799999998865431 1100 0000
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEe-CCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTH-DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDI 290 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wsp-Dg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~ 290 (789)
....++|+| |++.|+.... ...|.+|++.+. ..
T Consensus 120 ------------------------~v~~~~~~~~~~~~l~s~~~-------------------d~~i~iwd~~~~---~~ 153 (383)
T 3ei3_B 120 ------------------------AITGMKFNQFNTNQLFVSSI-------------------RGATTLRDFSGS---VI 153 (383)
T ss_dssp ------------------------BEEEEEEETTEEEEEEEEET-------------------TTEEEEEETTSC---EE
T ss_pred ------------------------ceeEEEeCCCCCCEEEEEeC-------------------CCEEEEEECCCC---ce
Confidence 257899999 5566655432 235888998742 22
Q ss_pred EEEec-CCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce-eEEEec
Q 003878 291 LCWKD-PEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEVIAN 368 (789)
Q Consensus 291 ~~~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~ 368 (789)
..+.. ..+...+..+.|+|||++|+.... ...|+++|+... +...+....... -..|+|
T Consensus 154 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~--------------~~~~~~~h~~~v~~~~~~~ 214 (383)
T 3ei3_B 154 QVFAKTDSWDYWYCCVDVSVSRQMLATGDS-----TGRLLLLGLDGH--------------EIFKEKLHKAKVTHAEFNP 214 (383)
T ss_dssp EEEECCCCSSCCEEEEEEETTTTEEEEEET-----TSEEEEEETTSC--------------EEEEEECSSSCEEEEEECS
T ss_pred EEEeccCCCCCCeEEEEECCCCCEEEEECC-----CCCEEEEECCCC--------------EEEEeccCCCcEEEEEECC
Confidence 22322 222344678999999999887653 356899998531 122232222222 234899
Q ss_pred CCCEEEEEECCCCCCceEEEEECCCCC---CeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceee
Q 003878 369 DDTVFTFLTNKDAPKYKIIRVDLKEPN---DWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLH 444 (789)
Q Consensus 369 dG~~l~~~tn~~~~~~~L~~~dl~~~~---~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~ 444 (789)
+++.+++.... +..|..+|+.+.+ .....+.+. ..+..+.+++ ++.++++...++ .|.+||+.+++...
T Consensus 215 ~~~~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~l~~~~~d~--~i~iwd~~~~~~~~ 287 (383)
T 3ei3_B 215 RCDWLMATSSV---DATVKLWDLRNIKDKNSYIAEMPHE--KPVNAAYFNPTDSTKLLTTDQRN--EIRVYSSYDWSKPD 287 (383)
T ss_dssp SCTTEEEEEET---TSEEEEEEGGGCCSTTCEEEEEECS--SCEEEEEECTTTSCEEEEEESSS--EEEEEETTBTTSCS
T ss_pred CCCCEEEEEeC---CCEEEEEeCCCCCcccceEEEecCC--CceEEEEEcCCCCCEEEEEcCCC--cEEEEECCCCcccc
Confidence 99833333332 3678899987632 133333433 5688899998 777888887776 79999998776544
Q ss_pred ecccC-------CeeEEEeecccCCcEEEEEEc-----CCCCCcEEEEEECCCCC
Q 003878 445 QLPIE-------IGSVNAISARREDSVVFISFT-----SFLIPGIVYQCNLKTET 487 (789)
Q Consensus 445 ~l~~~-------~~~v~~~s~s~d~~~l~~~~s-----s~~~P~~ly~~dl~tg~ 487 (789)
.+... ...+. ..+++++..+.+.++ +-..-+.++.||+.+++
T Consensus 288 ~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~ 341 (383)
T 3ei3_B 288 QIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGG 341 (383)
T ss_dssp EEEECCBCCCTTSCCCC-CEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCC
T ss_pred ccccccccccccccceE-EeccCCCCceEEEecCCcccccCCCCeEEEEecCCCc
Confidence 33311 11111 234455555444432 23356789999998886
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=8.6e-09 Score=113.27 Aligned_cols=237 Identities=19% Similarity=0.122 Sum_probs=146.1
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.+..+++||||++||.+. ...+|++||+++++.+. .+... .+
T Consensus 125 ~v~~v~~s~dg~~l~s~~-----~d~~i~iwd~~~~~~~~-~~~~h-------~~------------------------- 166 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGA-----EDRLIRIWDIENRKIVM-ILQGH-------EQ------------------------- 166 (393)
T ss_dssp BEEEEEECTTSSEEEEEE-----TTSCEEEEETTTTEEEE-EECCC-------SS-------------------------
T ss_pred eEEEEEECCCCCEEEEEc-----CCCeEEEEECCCCcEEE-EEccC-------CC-------------------------
Confidence 377899999999998543 23479999999986543 12211 00
Q ss_pred eeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 292 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~ 292 (789)
....++|+|||+.|+....+ ..|++|++.++.. ...
T Consensus 167 -----------------------~v~~~~~~p~~~~l~s~s~d-------------------~~v~iwd~~~~~~--~~~ 202 (393)
T 1erj_A 167 -----------------------DIYSLDYFPSGDKLVSGSGD-------------------RTVRIWDLRTGQC--SLT 202 (393)
T ss_dssp -----------------------CEEEEEECTTSSEEEEEETT-------------------SEEEEEETTTTEE--EEE
T ss_pred -----------------------CEEEEEEcCCCCEEEEecCC-------------------CcEEEEECCCCee--EEE
Confidence 24789999999998765432 3588999876532 222
Q ss_pred EecCCCCeeEEEEEEec-CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEee-------ecccccee-
Q 003878 293 WKDPEHPKYIFSGHVTE-DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL-------IDGFDAQY- 363 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l-------~~~~~~~~- 363 (789)
+... ..+..+.++| ||++|+....+ ..|.++|+.++. ....+ ........
T Consensus 203 ~~~~---~~v~~~~~~~~~~~~l~~~s~d-----~~v~iwd~~~~~-------------~~~~~~~~~~~~~~h~~~v~~ 261 (393)
T 1erj_A 203 LSIE---DGVTTVAVSPGDGKYIAAGSLD-----RAVRVWDSETGF-------------LVERLDSENESGTGHKDSVYS 261 (393)
T ss_dssp EECS---SCEEEEEECSTTCCEEEEEETT-----SCEEEEETTTCC-------------EEEEEC------CCCSSCEEE
T ss_pred EEcC---CCcEEEEEECCCCCEEEEEcCC-----CcEEEEECCCCc-------------EEEeecccccCCCCCCCCEEE
Confidence 3322 2355788999 89988876543 348888987742 11111 11111122
Q ss_pred EEEecCCCEEEEEECCCCCCceEEEEECCCCCC------------eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEE
Q 003878 364 EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND------------WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYV 431 (789)
Q Consensus 364 ~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~------------~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~ 431 (789)
..|+|+|+.|+..+. +..|..+|+.+... ...+..+. ..+..+.+++++..+++...++ .
T Consensus 262 v~~~~~g~~l~s~s~----d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~sgs~D~--~ 333 (393)
T 1erj_A 262 VVFTRDGQSVVSGSL----DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK--DFVLSVATTQNDEYILSGSKDR--G 333 (393)
T ss_dssp EEECTTSSEEEEEET----TSEEEEEEC---------------CEEEEEECCS--SCEEEEEECGGGCEEEEEETTS--E
T ss_pred EEECCCCCEEEEEeC----CCEEEEEECCCCCCcccccCCCCCcceEEEeccc--CcEEEEEECCCCCEEEEEeCCC--e
Confidence 348999998765432 46788888865320 11222333 4567788888677888888887 7
Q ss_pred EEEEECCCCceeeecccCCeeEEEeeccc------CCcEEEEEEcCCCCCcEEEEEECC
Q 003878 432 LQIRDLKNGSLLHQLPIEIGSVNAISARR------EDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 432 L~~~dl~tG~~~~~l~~~~~~v~~~s~s~------d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
|++||+.+|+....+..+...+..+.+++ +++. +++.+. -..+..|++.
T Consensus 334 v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~-l~sgs~---Dg~i~iW~~~ 388 (393)
T 1erj_A 334 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV-FATGSG---DCKARIWKYK 388 (393)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEE-EEEEET---TSEEEEEEEE
T ss_pred EEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCE-EEEECC---CCcEEECccc
Confidence 89999998887666665556666666554 4443 333322 3466666653
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.5e-08 Score=112.46 Aligned_cols=209 Identities=11% Similarity=-0.025 Sum_probs=126.2
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..++++|||++.++++.. ...+|+++++.+.....+..... ..+..++.|||||++++.
T Consensus 282 v~~i~~s~~~~~~~vs~~------------------~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~v 340 (543)
T 1nir_A 282 VAAIIASHEHPEFIVNVK------------------ETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMT 340 (543)
T ss_dssp EEEEEECSSSSEEEEEET------------------TTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEE
T ss_pred eEEEEECCCCCEEEEEEC------------------CCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEEE
Confidence 467899999999887743 23468888887643222112222 122346789999999876
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc----ccceeEEEecCCCEEEEEECCCCCCceEEEEECC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG----FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLK 392 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~ 392 (789)
.... .+.|.++|+++++ ....+..+ .......++|+++.+|+..+.+ +..|.+++++
T Consensus 341 a~~~----~~~v~v~D~~tg~-------------l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~--d~~V~v~d~~ 401 (543)
T 1nir_A 341 AANN----SNKVAVIDSKDRR-------------LSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLG--DGSISLIGTD 401 (543)
T ss_dssp EEGG----GTEEEEEETTTTE-------------EEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSS--SSEEEEEECC
T ss_pred EecC----CCeEEEEECCCCe-------------EEEeeccCCCCCCCCCcccCCCCCccEEEeccCC--CceEEEEEeC
Confidence 6532 3568899998852 11111111 1111233567777776655432 3578888887
Q ss_pred C-------CCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCC-----eEEEEEEECCCCcee-eecc--------cCCe
Q 003878 393 E-------PNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV-----KYVLQIRDLKNGSLL-HQLP--------IEIG 451 (789)
Q Consensus 393 ~-------~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g-----~~~L~~~dl~tG~~~-~~l~--------~~~~ 451 (789)
+ .+..+++-.+. .....+.+++++..+++...-+ ...|.+||+++++.. +.|. .+..
T Consensus 402 ~~~~~~~~~~~v~~l~~~g--~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~ 479 (543)
T 1nir_A 402 PKNHPQYAWKKVAELQGQG--GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAK 479 (543)
T ss_dssp TTTCTTTBTSEEEEEECSC--SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCC
T ss_pred CCCCchhcCeEEEEEEcCC--CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCC
Confidence 6 22223332232 2234577777655444443111 237999999988764 3332 2234
Q ss_pred eEEEeecccCCcEEEEEEc-CCCCCcEEEEEECCCCC
Q 003878 452 SVNAISARREDSVVFISFT-SFLIPGIVYQCNLKTET 487 (789)
Q Consensus 452 ~v~~~s~s~d~~~l~~~~s-s~~~P~~ly~~dl~tg~ 487 (789)
.+..+.++++++.++++.- .-.....|..||.+|++
T Consensus 480 ~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~ 516 (543)
T 1nir_A 480 RVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 516 (543)
T ss_dssp EEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred ceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCce
Confidence 4557889999999998763 33567899999999986
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.11 E-value=8.1e-08 Score=103.73 Aligned_cols=165 Identities=11% Similarity=-0.033 Sum_probs=91.5
Q ss_pred eEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC----C-c-----EEEEecCCCCeeEEEEEEe
Q 003878 239 SIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS----E-D-----ILCWKDPEHPKYIFSGHVT 308 (789)
Q Consensus 239 ~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~----~-~-----~~~~~~~~~~~~~~~~~~S 308 (789)
.++|+|||+.|+++.. ....++++++..... + - ......+. ......+.||
T Consensus 159 ~~~~spdg~~l~~~~~------------------~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~s 219 (361)
T 3scy_A 159 CVRITPDGKYLLADDL------------------GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP-GSGPRHLIFN 219 (361)
T ss_dssp EEEECTTSSEEEEEET------------------TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT-TCCEEEEEEC
T ss_pred EEEECCCCCEEEEEeC------------------CCCEEEEEEEcCCCCcccccceeecccccceecCC-CCCCeEEEEc
Confidence 4899999999988743 223577777664432 1 0 01122222 1223578999
Q ss_pred cCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec---ccc-ceeEEEecCCCEEEEEECCCCCCc
Q 003878 309 EDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID---GFD-AQYEVIANDDTVFTFLTNKDAPKY 384 (789)
Q Consensus 309 pDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~---~~~-~~~~~~s~dG~~l~~~tn~~~~~~ 384 (789)
|||++|++.... ...|++++++++. ......+.. +.. .....|+|||++||+...... .
T Consensus 220 pdg~~l~v~~~~----~~~v~v~~~~~g~-----------~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~--~ 282 (361)
T 3scy_A 220 SDGKFAYLINEI----GGTVIAFRYADGM-----------LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA--D 282 (361)
T ss_dssp TTSSEEEEEETT----TCEEEEEEEETTE-----------EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS--C
T ss_pred CCCCEEEEEcCC----CCeEEEEEecCCc-----------eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC--C
Confidence 999998876532 3568888876542 000111111 111 112448999999876543312 3
Q ss_pred eEEEEEC--CCCCCeEEe--ccCCCCceeeeEEEecCCE-EEEEEEeCCeEEEEEEECCCCce
Q 003878 385 KIIRVDL--KEPNDWFEV--IPEAERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 385 ~L~~~dl--~~~~~~~~l--~~~~~~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
.|.++++ .++. ++.+ ++. ......++++++++ |++....++.-.++.+|.++|+.
T Consensus 283 ~i~v~~~~~~~g~-~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~ 342 (361)
T 3scy_A 283 GVAIFKVDETNGT-LTKVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL 342 (361)
T ss_dssp EEEEEEECTTTCC-EEEEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEEEEEEcCCCCc-EEEeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE
Confidence 4555554 4444 3222 222 23456788998655 55444455655666688877775
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-08 Score=115.47 Aligned_cols=256 Identities=10% Similarity=-0.028 Sum_probs=143.9
Q ss_pred EEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccc
Q 003878 119 VLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLN 198 (789)
Q Consensus 119 ~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (789)
++++-.+++. .+.+++|||||+++| .++...+|+ |.++++.+.. |.+..+++..+|
T Consensus 7 ~~~~~~~~~~----~v~sv~~SpDG~~iA-----Sas~D~TV~--d~~~~~~l~g-----------h~~~v~~V~FsP-- 62 (588)
T 2j04_A 7 LLVDRKEFED----WKNNLTWARDGTLYL-----TTFPDISIG--QPKYAKDINC-----------NSKNLFHVKEFP-- 62 (588)
T ss_dssp EEECSCCCSS----SSCCEEECTTSCEEE-----ECSSSEEEE--EECCCSCCSS-----------BGGGTEEEEEEC--
T ss_pred hcccHhHhhc----cEEEEEECCCCCEEE-----EEcCCceee--cccccceecC-----------CCccEEEEEECC--
Confidence 3444444442 256789999999999 556667887 7666644321 112223333322
Q ss_pred ccccccccccccceeeEEEeeeccccceeeeeeec--------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCcccc
Q 003878 199 VPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVS--------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 270 (789)
Q Consensus 199 ~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~--------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~ 270 (789)
+| ..++..+|.... .-....++|||||+.|+....+.
T Consensus 63 --dg-------------------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg-------------- 107 (588)
T 2j04_A 63 --LE-------------------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNG-------------- 107 (588)
T ss_dssp --CC-------------------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTS--------------
T ss_pred --CC-------------------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCC--------------
Confidence 21 233334443221 11146899999999999775442
Q ss_pred CCcccEEEEEECCCCCCCcEEEEecCCCCe-----eEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccc
Q 003878 271 SNLYHEFYYHFLGTKQSEDILCWKDPEHPK-----YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 345 (789)
Q Consensus 271 ~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~-----~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 345 (789)
.+.+|+..+ ++.... +.. .+.+++|||||++|+....+ ..|.++++.++......+
T Consensus 108 -----~V~iwd~~~------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D-----GtVkIWd~~~~~l~~~~~-- 168 (588)
T 2j04_A 108 -----NVSVFKDNK------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED-----GELQFFSIRKNSENTPEF-- 168 (588)
T ss_dssp -----CEEEEETTE------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT-----SEEEEEECCCCTTTCCCC--
T ss_pred -----cEEEEeCCc------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC-----CEEEEEECCCCccccccc--
Confidence 367777432 222211 221 36689999999999987643 458888988742100000
Q ss_pred cCCCCccEeeeccc----ccee-EEEecCCCEEEEEECCCCCCceEEEEECCCCCC---eEEeccCCCCceeeeEEEecC
Q 003878 346 RDGLLPFVKLIDGF----DAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND---WFEVIPEAERDVLESATAVNL 417 (789)
Q Consensus 346 ~~~~~~~~~l~~~~----~~~~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~---~~~l~~~~~~~~i~~v~~~~~ 417 (789)
..+..+.... ...+ ..|+||| ++..+. +..+..+++.++.. ++.+.+.. ...+.+++|+ +
T Consensus 169 ----i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~tVrlWd~~~~~~~~~~~tL~~~h-~~~V~svaFs-g 236 (588)
T 2j04_A 169 ----YFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNSVFSMTVSASSHQPVSRMIQNAS-RRKITDLKIV-D 236 (588)
T ss_dssp ----EEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCCEEEECCCSSSSCCCEEEEECCC-SSCCCCEEEE-T
T ss_pred ----eeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCeEEEEECCCCccccceeeecccc-cCcEEEEEEE-C
Confidence 0012221111 1122 3499998 443332 35688899887651 23342222 3567889998 3
Q ss_pred CEEEEEEEeCCeEEEEEEECCCCceeeecc-cCCeeEEEeec--ccCCcEEEEEE
Q 003878 418 NQMIVSYLSDVKYVLQIRDLKNGSLLHQLP-IEIGSVNAISA--RREDSVVFISF 469 (789)
Q Consensus 418 ~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~-~~~~~v~~~s~--s~d~~~l~~~~ 469 (789)
..++. .. + ..|.+|++.+++. ..+. .....+..+.+ ++++..++.++
T Consensus 237 ~~LAS-a~-~--~tIkLWd~~~~~~-~~~~~gh~~~V~~va~~~s~d~~~La~a~ 286 (588)
T 2j04_A 237 YKVVL-TC-P--GYVHKIDLKNYSI-SSLKTGSLENFHIIPLNHEKESTILLMSN 286 (588)
T ss_dssp TEEEE-EC-S--SEEEEEETTTTEE-EEEECSCCSCCCEEEETTCSSCEEEEECS
T ss_pred CEEEE-Ee-C--CeEEEEECCCCeE-EEEEcCCCceEEEEEeeeCCCCCEEEEEc
Confidence 55544 43 3 3899999986554 2333 23555667788 88887666544
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.11 E-value=6.4e-09 Score=111.11 Aligned_cols=204 Identities=12% Similarity=0.102 Sum_probs=117.4
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCC----eeEEEEEEecCCc
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHP----KYIFSGHVTEDGQ 312 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~----~~~~~~~~SpDG~ 312 (789)
...++|+|||+.++++.. ...+|+++++.+... +........+ .....+.+||||+
T Consensus 45 ~~~~~~s~dg~~~~v~~~------------------~~~~i~~~d~~t~~~--~~~~~~~~~~~~~~~~~~~~~~spdg~ 104 (349)
T 1jmx_B 45 PGTAMMAPDNRTAYVLNN------------------HYGDIYGIDLDTCKN--TFHANLSSVPGEVGRSMYSFAISPDGK 104 (349)
T ss_dssp SCEEEECTTSSEEEEEET------------------TTTEEEEEETTTTEE--EEEEESCCSTTEEEECSSCEEECTTSS
T ss_pred CceeEECCCCCEEEEEeC------------------CCCcEEEEeCCCCcE--EEEEEcccccccccccccceEECCCCC
Confidence 367899999998887742 234688888876432 2222222110 1123578999999
Q ss_pred EEEEEEEcC-------CCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCce
Q 003878 313 YLVMCIEEN-------CDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYK 385 (789)
Q Consensus 313 ~l~~~~~~~-------~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~ 385 (789)
+|++...+. ......|+++|++++.. .................|+|||+ +|+. . ..
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~----------~~~~~~~~~~~~~~~~~~s~dg~-l~~~-~-----~~ 167 (349)
T 1jmx_B 105 EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE----------AKPVRTFPMPRQVYLMRAADDGS-LYVA-G-----PD 167 (349)
T ss_dssp EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG----------BCCSEEEECCSSCCCEEECTTSC-EEEE-S-----SS
T ss_pred EEEEEcccccccccccccCCCeEEEEECCCccc----------cceeeeccCCCcccceeECCCCc-EEEc-c-----Cc
Confidence 999876430 00125799999887421 01111111111112234899998 7663 1 23
Q ss_pred EEEEECCCCCCeEEeccCCC------------------------------------------------------------
Q 003878 386 IIRVDLKEPNDWFEVIPEAE------------------------------------------------------------ 405 (789)
Q Consensus 386 L~~~dl~~~~~~~~l~~~~~------------------------------------------------------------ 405 (789)
|+++|+++++ ....++...
T Consensus 168 i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
T 1jmx_B 168 IYKMDVKTGK-YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 246 (349)
T ss_dssp EEEECTTTCC-EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE
T ss_pred EEEEeCCCCc-eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEE
Confidence 8888887765 222222110
Q ss_pred -------CceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcE
Q 003878 406 -------RDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGI 477 (789)
Q Consensus 406 -------~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ 477 (789)
.....++.+++ ++..++.. ..+|++||+++++..+.+..+. .+..+.++++++.+++. + .-..
T Consensus 247 ~~~~~~~~~~~~~~~~sp~dg~~l~~~----~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~--~--~~~~ 317 (349)
T 1jmx_B 247 TQEFADLTELYFTGLRSPKDPNQIYGV----LNRLAKYDLKQRKLIKAANLDH-TYYCVAFDKKGDKLYLG--G--TFND 317 (349)
T ss_dssp EEEEEECSSCEEEEEECSSCTTEEEEE----ESEEEEEETTTTEEEEEEECSS-CCCEEEECSSSSCEEEE--S--BSSE
T ss_pred ecccccCCCcceeeEecCCCCCEEEEE----cCeEEEEECccCeEEEEEcCCC-CccceEECCCCCEEEEe--c--CCCe
Confidence 00112334445 54444333 3489999999887655655442 23467889999888763 2 2389
Q ss_pred EEEEECCCCC
Q 003878 478 VYQCNLKTET 487 (789)
Q Consensus 478 ly~~dl~tg~ 487 (789)
++.||+++++
T Consensus 318 v~v~d~~~~~ 327 (349)
T 1jmx_B 318 LAVFNPDTLE 327 (349)
T ss_dssp EEEEETTTTE
T ss_pred EEEEeccccc
Confidence 9999998884
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-08 Score=108.25 Aligned_cols=236 Identities=12% Similarity=0.064 Sum_probs=150.1
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..+..+.++|||++|+.+.. ...|++||+.+++.+... ... + -..+..+.|+++
T Consensus 75 ~~v~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~-~~~--------~----~v~~~~~~~~~~-------- 128 (369)
T 3zwl_B 75 GTIWSIDVDCFTKYCVTGSA-----DYSIKLWDVSNGQCVATW-KSP--------V----PVKRVEFSPCGN-------- 128 (369)
T ss_dssp SCEEEEEECTTSSEEEEEET-----TTEEEEEETTTCCEEEEE-ECS--------S----CEEEEEECTTSS--------
T ss_pred CcEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCcEEEEe-ecC--------C----CeEEEEEccCCC--------
Confidence 45788999999999985432 237999999998654311 110 0 011223345553
Q ss_pred eeeEEEeeeccc-----cceeeeeeeccc-----------------------ccceEEEEeCCcEEEEEEccCCCCCCCC
Q 003878 212 FFFFYLFSLVKS-----TIYSFWSVVSQF-----------------------KFSSIAWTHDSKGFFYSRYPAPKEGKDM 263 (789)
Q Consensus 212 ~~~~~~~~s~~~-----g~~~l~~~~~~~-----------------------~~~~~~wspDg~~i~y~~~~~~~~~~~~ 263 (789)
.++.+..+ |...+|.+...- ....++|+||++.|+....+
T Consensus 129 ----~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-------- 196 (369)
T 3zwl_B 129 ----YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD-------- 196 (369)
T ss_dssp ----EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETT--------
T ss_pred ----EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCC--------
Confidence 44444444 777888776510 45678999999988876432
Q ss_pred CCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccc
Q 003878 264 DAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF 343 (789)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~ 343 (789)
..|+++++.+... ....+.. +...+..+.|+|||++|+.... ...|+++|+.++.
T Consensus 197 -----------g~i~i~d~~~~~~-~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-----d~~i~v~d~~~~~------ 251 (369)
T 3zwl_B 197 -----------GKISKYDVSNNYE-YVDSIDL--HEKSISDMQFSPDLTYFITSSR-----DTNSFLVDVSTLQ------ 251 (369)
T ss_dssp -----------SEEEEEETTTTTE-EEEEEEC--CSSCEEEEEECTTSSEEEEEET-----TSEEEEEETTTCC------
T ss_pred -----------CEEEEEECCCCcE-eEEEEec--CCCceeEEEECCCCCEEEEecC-----CceEEEEECCCCc------
Confidence 3588999876322 2223332 2334668999999999987653 3568999998742
Q ss_pred cccCCCCccEeeeccccceeEEEecCCCEEEEEECCCC----------CCceEEEEECCCCCCeEEeccCCCCceeeeEE
Q 003878 344 KKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDA----------PKYKIIRVDLKEPNDWFEVIPEAERDVLESAT 413 (789)
Q Consensus 344 ~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~----------~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~ 413 (789)
...............|+|+|+.+++.+..+. ....+..+|+.+++....+..+. ..+..+.
T Consensus 252 -------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~v~~~~ 322 (369)
T 3zwl_B 252 -------VLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHF--GPLNTVA 322 (369)
T ss_dssp -------EEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCS--SCEEEEE
T ss_pred -------eeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheeccc--CcEEEEE
Confidence 1222222222223458999998887765431 22378888988876334443343 5688899
Q ss_pred EecCCEEEEEEEeCCeEEEEEEECCCCc
Q 003878 414 AVNLNQMIVSYLSDVKYVLQIRDLKNGS 441 (789)
Q Consensus 414 ~~~~~~lv~~~~~~g~~~L~~~dl~tG~ 441 (789)
+++++.++++...++ .|.+|+++++.
T Consensus 323 ~s~~~~~l~s~~~dg--~v~iw~~~~~~ 348 (369)
T 3zwl_B 323 ISPQGTSYASGGEDG--FIRLHHFEKSY 348 (369)
T ss_dssp ECTTSSEEEEEETTS--EEEEEEECHHH
T ss_pred ECCCCCEEEEEcCCC--eEEEEECcccc
Confidence 998777888888887 78888887543
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-08 Score=106.92 Aligned_cols=223 Identities=11% Similarity=0.006 Sum_probs=143.4
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.+..+.++|||++|+-+ +...+|++||+.+++.+. .+... .+
T Consensus 57 ~v~~~~~~~~~~~l~s~-----s~d~~i~vwd~~~~~~~~-~~~~h-------~~------------------------- 98 (304)
T 2ynn_A 57 PVRAGKFIARKNWIIVG-----SDDFRIRVFNYNTGEKVV-DFEAH-------PD------------------------- 98 (304)
T ss_dssp CEEEEEEEGGGTEEEEE-----ETTSEEEEEETTTCCEEE-EEECC-------SS-------------------------
T ss_pred cEEEEEEeCCCCEEEEE-----CCCCEEEEEECCCCcEEE-EEeCC-------CC-------------------------
Confidence 46788899999999854 334589999999997553 12211 00
Q ss_pred eeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 292 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~ 292 (789)
....++|+||++.|+-...+ ..|.+|++.+.... ...
T Consensus 99 -----------------------~v~~~~~~~~~~~l~sgs~D-------------------~~v~lWd~~~~~~~-~~~ 135 (304)
T 2ynn_A 99 -----------------------YIRSIAVHPTKPYVLSGSDD-------------------LTVKLWNWENNWAL-EQT 135 (304)
T ss_dssp -----------------------CEEEEEECSSSSEEEEEETT-------------------SCEEEEEGGGTTEE-EEE
T ss_pred -----------------------cEEEEEEcCCCCEEEEECCC-------------------CeEEEEECCCCcch-hhh
Confidence 24789999999988755433 34888888654221 122
Q ss_pred EecCCCCeeEEEEEEec-CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc--cceeEEEec-
Q 003878 293 WKDPEHPKYIFSGHVTE-DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF--DAQYEVIAN- 368 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~s~- 368 (789)
+.. +...+..++|+| |++.|+..+. ...|.++|+.++. +...+..+. ......+++
T Consensus 136 ~~~--h~~~v~~v~~~p~~~~~l~sgs~-----D~~v~iwd~~~~~-------------~~~~~~~~~~~~v~~~~~~~~ 195 (304)
T 2ynn_A 136 FEG--HEHFVMCVAFNPKDPSTFASGCL-----DRTVKVWSLGQST-------------PNFTLTTGQERGVNYVDYYPL 195 (304)
T ss_dssp ECC--CCSCEEEEEECTTCTTEEEEEET-----TSEEEEEETTCSS-------------CSEEEECCCTTCEEEEEECCS
T ss_pred hcc--cCCcEEEEEECCCCCCEEEEEeC-----CCeEEEEECCCCC-------------ccceeccCCcCcEEEEEEEEc
Confidence 332 344567899999 5677765443 3458889987632 112222211 112223554
Q ss_pred -CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecc
Q 003878 369 -DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP 447 (789)
Q Consensus 369 -dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~ 447 (789)
++..|+..+ .+..|..+|+.+++....+..+. ..+..+.+++++.++++...++ .|.+||+.+++..+.+.
T Consensus 196 ~~~~~l~s~s----~D~~i~iWd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~s~Dg--~i~iWd~~~~~~~~~~~ 267 (304)
T 2ynn_A 196 PDKPYMITAS----DDLTIKIWDYQTKSCVATLEGHM--SNVSFAVFHPTLPIIISGSEDG--TLKIWNSSTYKVEKTLN 267 (304)
T ss_dssp TTCCEEEEEE----TTSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSEEEEEETTS--CEEEEETTTCCEEEEEC
T ss_pred CCCCEEEEEc----CCCeEEEEeCCCCccceeeCCCC--CCEEEEEECCCCCEEEEEcCCC--eEEEEECCCCceeeecc
Confidence 566665433 24679999998876334444443 4577888888777888888887 68999999888767776
Q ss_pred cCCeeEEEeecccCCcE
Q 003878 448 IEIGSVNAISARREDSV 464 (789)
Q Consensus 448 ~~~~~v~~~s~s~d~~~ 464 (789)
.+...+..+++.|++..
T Consensus 268 ~~~~~~~~~~~~~~~~~ 284 (304)
T 2ynn_A 268 VGLERSWCIATHPTGRK 284 (304)
T ss_dssp CSSSSEEEEEECTTCGG
T ss_pred CCCccEEEEEECCCCCc
Confidence 65555666777777654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.10 E-value=7.8e-09 Score=111.50 Aligned_cols=243 Identities=9% Similarity=-0.011 Sum_probs=150.8
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCc--eecccccccccccccCccceeeeeecccccccccccccccc
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI--VEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
.+..+++||||++||.+.. ...|++||+.+++ .+. .+... .+
T Consensus 10 ~i~~~~~s~~~~~l~~~~~-----d~~v~i~~~~~~~~~~~~-~~~~h-------~~----------------------- 53 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPN-----NHEVHIYEKSGNKWVQVH-ELKEH-------NG----------------------- 53 (372)
T ss_dssp CCCEEEECTTSSEEEEECS-----SSEEEEEEEETTEEEEEE-EEECC-------SS-----------------------
T ss_pred CeEEEEECCCCCEEEEEeC-----CCEEEEEeCCCCcEEeee-eecCC-------CC-----------------------
Confidence 3677899999999986532 3479999999885 221 12111 00
Q ss_pred ceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcE
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDI 290 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~ 290 (789)
....++|+|||+.|+....+ ..|++|++.+....
T Consensus 54 -------------------------~v~~~~~~~~~~~l~~~~~d-------------------g~i~vwd~~~~~~~-- 87 (372)
T 1k8k_C 54 -------------------------QVTGVDWAPDSNRIVTCGTD-------------------RNAYVWTLKGRTWK-- 87 (372)
T ss_dssp -------------------------CEEEEEEETTTTEEEEEETT-------------------SCEEEEEEETTEEE--
T ss_pred -------------------------cccEEEEeCCCCEEEEEcCC-------------------CeEEEEECCCCeee--
Confidence 25789999999999876432 24778887554321
Q ss_pred EEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc-ccc-eeEEEec
Q 003878 291 LCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FDA-QYEVIAN 368 (789)
Q Consensus 291 ~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~~s~ 368 (789)
.......+...+..+.|+|||++|+....+ ..+.++++.++.. .......... ... ....|+|
T Consensus 88 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~i~d~~~~~~----------~~~~~~~~~~~~~~i~~~~~~~ 152 (372)
T 1k8k_C 88 PTLVILRINRAARCVRWAPNEKKFAVGSGS-----RVISICYFEQEND----------WWVCKHIKKPIRSTVLSLDWHP 152 (372)
T ss_dssp EEEECCCCSSCEEEEEECTTSSEEEEEETT-----SSEEEEEEETTTT----------EEEEEEECTTCCSCEEEEEECT
T ss_pred eeEEeecCCCceeEEEECCCCCEEEEEeCC-----CEEEEEEecCCCc----------ceeeeeeecccCCCeeEEEEcC
Confidence 122222233446789999999999877643 2366666665310 0001111111 111 1234899
Q ss_pred CCCEEEEEECCCCCCceEEEEECC------------------CCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeE
Q 003878 369 DDTVFTFLTNKDAPKYKIIRVDLK------------------EPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKY 430 (789)
Q Consensus 369 dG~~l~~~tn~~~~~~~L~~~dl~------------------~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~ 430 (789)
+++.|+..+. ++.|..+|+. .+.....+..+ ...+..+.+++++.++++...++
T Consensus 153 ~~~~l~~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~-- 224 (372)
T 1k8k_C 153 NSVLLAAGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--CGWVHGVCFSANGSRVAWVSHDS-- 224 (372)
T ss_dssp TSSEEEEEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--SSCEEEEEECSSSSEEEEEETTT--
T ss_pred CCCEEEEEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCC--CCeEEEEEECCCCCEEEEEeCCC--
Confidence 9988776543 3568888853 23312222222 35678899988666777777776
Q ss_pred EEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCC
Q 003878 431 VLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 485 (789)
Q Consensus 431 ~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~t 485 (789)
.|.+||+.+++.+..+..+...+..+.+++++..++.. .-..++.|++.+
T Consensus 225 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~d~~i~i~~~~~ 274 (372)
T 1k8k_C 225 TVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-----HDCFPVLFTYDS 274 (372)
T ss_dssp EEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-----TTSSCEEEEEET
T ss_pred EEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-----eCCeEEEEEccC
Confidence 79999998888766776666677788899988755432 234667777766
|
| >2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-10 Score=133.62 Aligned_cols=133 Identities=17% Similarity=0.128 Sum_probs=94.5
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCC-CCCHHHHHHHHcCCeEEEEEeecC-CCCCChhHHhcccc
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP-SFSVSRTILMRHLGAVFCIANIRG-GGEYGEEWHKGGAL 592 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~-~~~~~~~~~l~~~G~~v~~~~~RG-~g~~g~~~~~~~~~ 592 (789)
+.|. . .+.++.|++...+++.|+||++|||....... .|... .++.+.|++|+.+|||- ..+|+..... .
T Consensus 95 ~edc-l--~lnv~~P~~~~~~~~~Pv~v~iHGG~~~~g~~~~~~~~--~la~~~g~vvv~~nYRlg~~gf~~~~~~---~ 166 (542)
T 2h7c_A 95 SEDC-L--YLNIYTPADLTKKNRLPVMVWIHGGGLMVGAASTYDGL--ALAAHENVVVVTIQYRLGIWGFFSTGDE---H 166 (542)
T ss_dssp ESCC-C--EEEEEECSCTTSCCCEEEEEEECCSTTTSCCSTTSCCH--HHHHHHTCEEEEECCCCHHHHHCCCSST---T
T ss_pred CCCC-c--EEEEEECCCCCCCCCCCEEEEECCCcccCCCccccCHH--HHHhcCCEEEEecCCCCccccCCCCCcc---c
Confidence 5676 4 44577888754457899999999986443332 24432 35555799999999993 2222221111 1
Q ss_pred cCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHh--CCCceeEEEecCCcccc
Q 003878 593 AKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVMDM 655 (789)
Q Consensus 593 ~~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~pd~f~a~v~~~p~~d~ 655 (789)
..+...+.|.+++++|+.++ -..||+||.|+|+|+||.+++.++.. .+.+|+++|+++|....
T Consensus 167 ~~~n~gl~D~~~al~wv~~ni~~fggDp~~Vtl~G~SaGg~~~~~~~~~~~~~~lf~~ai~~Sg~~~~ 234 (542)
T 2h7c_A 167 SRGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVALT 234 (542)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTTC
T ss_pred CccchhHHHHHHHHHHHHHHHHHcCCCccceEEEEechHHHHHHHHHhhhhhhHHHHHHhhhcCCccC
Confidence 22334578999999999875 24699999999999999999998876 36799999999997664
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-08 Score=106.37 Aligned_cols=213 Identities=10% Similarity=0.048 Sum_probs=115.6
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC-CcEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS-EDILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~-~~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
...++|+|||+.|+++... ...|+++++..+.. +......... ....+.|+|||++|+
T Consensus 86 ~~~~~~s~dg~~l~~~~~~------------------~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~ 144 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYN------------------AGNVSVTRLEDGLPVGVVDVVEGLD---GCHSANISPDNRTLW 144 (343)
T ss_dssp CSEEEECTTSSEEEEEETT------------------TTEEEEEEEETTEEEEEEEEECCCT---TBCCCEECTTSSEEE
T ss_pred CcEEEEcCCCCEEEEEecC------------------CCeEEEEECCCCccccccccccCCC---CceEEEECCCCCEEE
Confidence 4789999999999887432 23477777642111 1111222211 134578999999997
Q ss_pred EEEEcCCCCceEEEEEECCC-CCCCcccccccCCCCccE--eee--ccccceeEEEecCCCEEEEEECCCCCCceEEEEE
Q 003878 316 MCIEENCDPVNKVYYCDLSA-LPEGLEGFKKRDGLLPFV--KLI--DGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVD 390 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~--~l~--~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~d 390 (789)
+.... ...|+++++.+ +. ..... ... .+.......|+|+|+.+++.... ...|..++
T Consensus 145 ~~~~~----~~~v~~~d~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~---~~~i~~~~ 206 (343)
T 1ri6_A 145 VPALK----QDRICLFTVSDDGH-----------LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL---NSSVDVWE 206 (343)
T ss_dssp EEEGG----GTEEEEEEECTTSC-----------EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT---TTEEEEEE
T ss_pred EecCC----CCEEEEEEecCCCc-----------eeeecccccccCCCCCcceEEECCCCCEEEEEeCC---CCEEEEEE
Confidence 76522 35688888875 31 00000 111 11122234589999988876543 35788888
Q ss_pred CCC--CCC--eEEe--ccCC--CCceeeeEEEecCC-EEEEEEEeCCeEEEEEEECC--CCce--eeecccCCeeEEEee
Q 003878 391 LKE--PND--WFEV--IPEA--ERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLK--NGSL--LHQLPIEIGSVNAIS 457 (789)
Q Consensus 391 l~~--~~~--~~~l--~~~~--~~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~--tG~~--~~~l~~~~~~v~~~s 457 (789)
++. +.. ...+ ++.. .......+.+++++ .+++....++ .|.+|+++ +++. ...+.... .+..++
T Consensus 207 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~--~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~ 283 (343)
T 1ri6_A 207 LKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTAS--LITVFSVSEDGSVLSKEGFQPTET-QPRGFN 283 (343)
T ss_dssp SSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTT--EEEEEEECTTSCCEEEEEEEECSS-SCCCEE
T ss_pred ecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCC--EEEEEEEcCCCCceEEeeeecCCC-ccceEE
Confidence 753 330 1111 1211 11234568888865 4555444444 68888876 3432 22222222 255678
Q ss_pred cccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEee
Q 003878 458 ARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFR 494 (789)
Q Consensus 458 ~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~ 494 (789)
++++++.++++.. ....-.+|.+|..+++ .+.+.
T Consensus 284 ~s~dg~~l~~~~~-~~~~v~v~~~d~~~g~--~~~~~ 317 (343)
T 1ri6_A 284 VDHSGKYLIAAGQ-KSHHISVYEIVGEQGL--LHEKG 317 (343)
T ss_dssp ECTTSSEEEEECT-TTCEEEEEEEETTTTE--EEEEE
T ss_pred ECCCCCEEEEecC-CCCeEEEEEEcCCCce--eeEcc
Confidence 8999997776542 2223344445766773 44443
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.08 E-value=6.9e-08 Score=102.16 Aligned_cols=262 Identities=11% Similarity=0.026 Sum_probs=149.3
Q ss_pred CCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec---ccccccccccccCccceeeeeeccccccccccc
Q 003878 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA---DALSWVCFCFSHSFGYFFHLTISLLNVPTYKLF 205 (789)
Q Consensus 129 ~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 205 (789)
++...+..+++||||++||.+.. ..+|++||+.++.... ..+... .+
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~-------~~------------------ 58 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSS-----DQHIKVFKLDKDTSNWELSDSWRAH-------DS------------------ 58 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEET-----TSEEEEEEECSSSCCEEEEEEEECC-------SS------------------
T ss_pred ccccceeEEEEcCCCCEEEEeeC-----CCeEEEEECCCCCCcceecceeccC-------CC------------------
Confidence 34456889999999999985432 3489999999774221 111111 00
Q ss_pred cccccceeeEEEeeeccccceeeeeeecccccceEEEEe--CCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECC
Q 003878 206 LYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTH--DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLG 283 (789)
Q Consensus 206 ~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wsp--Dg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg 283 (789)
....++|+| |++.|+....+ ..|.+|++.
T Consensus 59 ------------------------------~v~~~~~~~~~d~~~l~s~~~d-------------------g~v~vwd~~ 89 (351)
T 3f3f_A 59 ------------------------------SIVAIDWASPEYGRIIASASYD-------------------KTVKLWEED 89 (351)
T ss_dssp ------------------------------CEEEEEECCGGGCSEEEEEETT-------------------SCEEEEEEC
T ss_pred ------------------------------cEEEEEEcCCCCCCEEEEEcCC-------------------CeEEEEecC
Confidence 257899999 68888766433 247888886
Q ss_pred CCCCCc-----EEEEecCCCCeeEEEEEEecC--CcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee
Q 003878 284 TKQSED-----ILCWKDPEHPKYIFSGHVTED--GQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI 356 (789)
Q Consensus 284 ~~~~~~-----~~~~~~~~~~~~~~~~~~SpD--G~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~ 356 (789)
++.... ..+.....+...+..+.|+|+ |++|+.... ...|.++|+.++... ..+.... ........
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----dg~v~iwd~~~~~~~-~~~~~~~-~~~~~~~~ 162 (351)
T 3f3f_A 90 PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN-----DGILRLYDALEPSDL-RSWTLTS-EMKVLSIP 162 (351)
T ss_dssp TTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-----TCEEEEEECSSTTCT-TCCEEEE-EEESCSCC
T ss_pred CCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC-----CCcEEEecCCChHHh-ccccccc-cccccccc
Confidence 653211 222222233445678999999 999887653 356899998874211 0000000 00000000
Q ss_pred --ccc-cceeEEEecC---CCEEEEEECCCCCCceEEEEECCCCCCeEEecc-CCCCceeeeEEEecCC----EEEEEEE
Q 003878 357 --DGF-DAQYEVIAND---DTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP-EAERDVLESATAVNLN----QMIVSYL 425 (789)
Q Consensus 357 --~~~-~~~~~~~s~d---G~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~-~~~~~~i~~v~~~~~~----~lv~~~~ 425 (789)
... ......|+|+ ++.++..+.. ..+...+...+. ...+.. ......+..+.+++++ .++++..
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~~~~~~~-~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSALE----QAIIYQRGKDGK-LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEETT----EEEEEEECTTSC-EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecCC----CcEEEEccCCCc-eeeeeecCCCCcceeEEEECCCCCCcceEEEEEc
Confidence 000 1112337776 6766654432 345555555444 221211 1123568889999865 7888888
Q ss_pred eCCeEEEEEEECCCC----------------------------------------------ceeeecccCCeeEEEeecc
Q 003878 426 SDVKYVLQIRDLKNG----------------------------------------------SLLHQLPIEIGSVNAISAR 459 (789)
Q Consensus 426 ~~g~~~L~~~dl~tG----------------------------------------------~~~~~l~~~~~~v~~~s~s 459 (789)
.++ .|++||+.++ +....+..+...+..+.++
T Consensus 238 ~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 315 (351)
T 3f3f_A 238 KDG--RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN 315 (351)
T ss_dssp TTS--CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEEC
T ss_pred CCC--eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEc
Confidence 887 5777777643 1222223334567788889
Q ss_pred cCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 460 REDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 460 ~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
++++.++... .-+.+..|++.+++
T Consensus 316 ~~~~~l~s~~----~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 316 LTGTILSSAG----DDGKVRLWKATYSN 339 (351)
T ss_dssp SSSCCEEEEE----TTSCEEEEEECTTS
T ss_pred CCCCEEEEec----CCCcEEEEecCcCc
Confidence 9887555332 23578888887764
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.9e-08 Score=108.14 Aligned_cols=243 Identities=12% Similarity=0.045 Sum_probs=154.2
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..+..++|||||++||.+.. . ..|++||+.+++.+. .+.... +
T Consensus 135 ~~v~~v~~s~~~~~l~~~~~-d----g~i~iwd~~~~~~~~-~~~~~~-------~------------------------ 177 (401)
T 4aez_A 135 TYVASVKWSHDGSFLSVGLG-N----GLVDIYDVESQTKLR-TMAGHQ-------A------------------------ 177 (401)
T ss_dssp CCEEEEEECTTSSEEEEEET-T----SCEEEEETTTCCEEE-EECCCS-------S------------------------
T ss_pred CCEEEEEECCCCCEEEEECC-C----CeEEEEECcCCeEEE-EecCCC-------C------------------------
Confidence 35788999999999987553 2 379999999986553 121110 0
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
....++| +++.|+.... ...|++|++.+... ...
T Consensus 178 ------------------------~v~~~~~--~~~~l~~~~~-------------------dg~i~i~d~~~~~~-~~~ 211 (401)
T 4aez_A 178 ------------------------RVGCLSW--NRHVLSSGSR-------------------SGAIHHHDVRIANH-QIG 211 (401)
T ss_dssp ------------------------CEEEEEE--ETTEEEEEET-------------------TSEEEEEETTSSSC-EEE
T ss_pred ------------------------ceEEEEE--CCCEEEEEcC-------------------CCCEEEEecccCcc-eee
Confidence 2467788 5666665532 24688999875432 223
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCC
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDD 370 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG 370 (789)
.+.. +...+..+.|+|||++|+....+ ..|.++|+.++. +...+..... .....|+|++
T Consensus 212 ~~~~--~~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~-------------~~~~~~~~~~~v~~~~~~p~~ 271 (401)
T 4aez_A 212 TLQG--HSSEVCGLAWRSDGLQLASGGND-----NVVQIWDARSSI-------------PKFTKTNHNAAVKAVAWCPWQ 271 (401)
T ss_dssp EEEC--CSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTCSS-------------EEEEECCCSSCCCEEEECTTS
T ss_pred EEcC--CCCCeeEEEEcCCCCEEEEEeCC-----CeEEEccCCCCC-------------ccEEecCCcceEEEEEECCCC
Confidence 3333 33446789999999999876643 448899998742 1222222111 1224589988
Q ss_pred CEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEE--eCCeEEEEEEECCCCceeee--c
Q 003878 371 TVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL--SDVKYVLQIRDLKNGSLLHQ--L 446 (789)
Q Consensus 371 ~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~--~~g~~~L~~~dl~tG~~~~~--l 446 (789)
..+++.... ..+..|..+|+.+++... .+... ..+..+.+++++..++... .++ .|.+|++.+++.... +
T Consensus 272 ~~ll~~~~g-s~d~~i~i~d~~~~~~~~-~~~~~--~~v~~~~~s~~~~~l~~~~g~~dg--~i~v~~~~~~~~~~~~~~ 345 (401)
T 4aez_A 272 SNLLATGGG-TMDKQIHFWNAATGARVN-TVDAG--SQVTSLIWSPHSKEIMSTHGFPDN--NLSIWSYSSSGLTKQVDI 345 (401)
T ss_dssp TTEEEEECC-TTTCEEEEEETTTCCEEE-EEECS--SCEEEEEECSSSSEEEEEECTTTC--EEEEEEEETTEEEEEEEE
T ss_pred CCEEEEecC-CCCCEEEEEECCCCCEEE-EEeCC--CcEEEEEECCCCCeEEEEeecCCC--cEEEEecCCccceeEEEe
Confidence 877765531 235789999998876333 33332 4578899998666666654 454 788899886654333 3
Q ss_pred ccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 447 PIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 447 ~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
....+.+..+.+++++..++.. ..-+.+..|++.+++
T Consensus 346 ~~h~~~v~~~~~s~dg~~l~s~----~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 346 PAHDTRVLYSALSPDGRILSTA----ASDENLKFWRVYDGD 382 (401)
T ss_dssp ECCSSCCCEEEECTTSSEEEEE----CTTSEEEEEECCC--
T ss_pred cCCCCCEEEEEECCCCCEEEEE----eCCCcEEEEECCCCc
Confidence 3345567778899999866643 234789999998874
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.07 E-value=2.3e-08 Score=107.58 Aligned_cols=242 Identities=9% Similarity=0.001 Sum_probs=145.0
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+...+..+++||||++|+- |+...+|++||+.+++.+. .+... .+
T Consensus 75 h~~~V~~~~~~~~~~~l~s-----~s~D~~v~lwd~~~~~~~~-~~~~h-------~~---------------------- 119 (343)
T 2xzm_R 75 HNHFVSDLALSQENCFAIS-----SSWDKTLRLWDLRTGTTYK-RFVGH-------QS---------------------- 119 (343)
T ss_dssp CSSCEEEEEECSSTTEEEE-----EETTSEEEEEETTSSCEEE-EEECC-------CS----------------------
T ss_pred CCCceEEEEECCCCCEEEE-----EcCCCcEEEEECCCCcEEE-EEcCC-------CC----------------------
Confidence 3345788999999999873 3334589999999986543 12211 00
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
....++|+|||+.|+....+ ..|.+|++... .
T Consensus 120 --------------------------~v~~v~~sp~~~~l~s~~~d-------------------~~i~~wd~~~~---~ 151 (343)
T 2xzm_R 120 --------------------------EVYSVAFSPDNRQILSAGAE-------------------REIKLWNILGE---C 151 (343)
T ss_dssp --------------------------CEEEEEECSSTTEEEEEETT-------------------SCEEEEESSSC---E
T ss_pred --------------------------cEEEEEECCCCCEEEEEcCC-------------------CEEEEEeccCC---c
Confidence 25789999999998865432 34788887521 1
Q ss_pred EEEEe-cCCCCeeEEEEEEecCC----------cEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc
Q 003878 290 ILCWK-DPEHPKYIFSGHVTEDG----------QYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG 358 (789)
Q Consensus 290 ~~~~~-~~~~~~~~~~~~~SpDG----------~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~ 358 (789)
..... ...+...+..+.|+|++ .+++.... ...|.++|.... ....+...
T Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~-----d~~i~iwd~~~~--------------~~~~~~~h 212 (343)
T 2xzm_R 152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW-----DGRLKVWNTNFQ--------------IRYTFKAH 212 (343)
T ss_dssp EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEET-----TSEEEEEETTTE--------------EEEEEECC
T ss_pred eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcC-----CCEEEEEcCCCc--------------eeEEEcCc
Confidence 11111 11234456788999998 55654432 345888884321 11112211
Q ss_pred ccce-eEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEEC
Q 003878 359 FDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 359 ~~~~-~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl 437 (789)
.... ...|+|+|+.|+..+ .+..|..+|+.........+... ..+..+++++++.+++...++ .|++|++
T Consensus 213 ~~~v~~~~~s~~g~~l~sgs----~dg~v~iwd~~~~~~~~~~~~~~--~~v~~v~~sp~~~~la~~~d~---~v~iw~~ 283 (343)
T 2xzm_R 213 ESNVNHLSISPNGKYIATGG----KDKKLLIWDILNLTYPQREFDAG--STINQIAFNPKLQWVAVGTDQ---GVKIFNL 283 (343)
T ss_dssp SSCEEEEEECTTSSEEEEEE----TTCEEEEEESSCCSSCSEEEECS--SCEEEEEECSSSCEEEEEESS---CEEEEES
T ss_pred cccceEEEECCCCCEEEEEc----CCCeEEEEECCCCcccceeecCC--CcEEEEEECCCCCEEEEECCC---CEEEEEe
Confidence 1112 234899999877543 24679999984432112222222 347889999866666655443 4889998
Q ss_pred CCCceee--ecc-----------cCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 438 KNGSLLH--QLP-----------IEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 438 ~tG~~~~--~l~-----------~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
.+++... .+. .....+..++++|+++.++... .-+.+..|++.++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~----~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 284 MTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF----TDGVIRTFSFETS 341 (343)
T ss_dssp SSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE----TTSEEEEEEEEEE
T ss_pred CCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEec----CCceEEEEEEEcc
Confidence 7665422 222 1234577889999998776432 2357888887554
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.07 E-value=3e-08 Score=104.64 Aligned_cols=225 Identities=11% Similarity=0.076 Sum_probs=145.7
Q ss_pred eEeCCEEEEEEEcCCC---------CeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEE-ecCCce
Q 003878 87 FKRGNKYFYFHNTGLQ---------PQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYAL-SYSGSD 156 (789)
Q Consensus 87 ~~~g~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~-~~~g~~ 156 (789)
..+|+++||.....+. .+..||+.+..+++.++|.+.. ...+||+|++|+|+. +..+
T Consensus 61 ~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~-----------~~~~s~~g~~Iy~~~~~~~~-- 127 (302)
T 3s25_A 61 NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP-----------CIYASLIGNYIYYLHYDTQT-- 127 (302)
T ss_dssp EECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC-----------EEEEEEETTEEEEEEESSSS--
T ss_pred EEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC-----------ccEEEEeCCEEEEEeecCCC--
Confidence 4689999999876431 1456888876545545554422 126889999999986 2233
Q ss_pred EEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccc
Q 003878 157 WATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFK 236 (789)
Q Consensus 157 ~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~ 236 (789)
...|+.+++.+.... .+...
T Consensus 128 ~~~Iy~~~~dGs~~~--~lt~~---------------------------------------------------------- 147 (302)
T 3s25_A 128 ATSLYRIRIDGEEKK--KIKNH---------------------------------------------------------- 147 (302)
T ss_dssp CEEEEEEETTSCCCE--EEESS----------------------------------------------------------
T ss_pred CceEEEEECCCCCeE--EEeCC----------------------------------------------------------
Confidence 468999999865432 12221
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...+|+|||+.|||+.. ...+|++.++.+... ..+++. ..+ . .++|+|++|++
T Consensus 148 -~~~~~~~~g~~iy~t~~------------------g~~~Iy~~~l~g~~~--~~l~~~---~~~--~-~~~P~g~~iy~ 200 (302)
T 3s25_A 148 -YLFTCNTSDRYFYYNNP------------------KNGQLYRYDTASQSE--ALFYDC---NCY--K-PVVLDDTNVYY 200 (302)
T ss_dssp -CCCCSEEETTEEEEECT------------------TTCCEEEEETTTTEE--EEEECS---CEE--E-EEEEETTEEEE
T ss_pred -CceEeeEECCEEEEEeC------------------CCceEEEEECCCCCE--EEEeCC---Ccc--c-eeeecCCEEEE
Confidence 11346889999999832 234699999876543 344542 222 2 35699999998
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND 396 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~ 396 (789)
+.... ...|+.++++++. ...++.. ..+.++|+|+.||+.++.. ...|+++++++..
T Consensus 201 t~~~~---~~~I~~~~ldG~~--------------~~~Lt~~---~~~~~~~~g~~Iy~~~~~~--~~~i~~~~~DG~~- 257 (302)
T 3s25_A 201 MDVNR---DNAIVHVNINNPN--------------PVVLTEA---NIEHYNVYGSLIFYQRGGD--NPALCVVKNDGTG- 257 (302)
T ss_dssp EEGGG---TTEEEEECSSSCC--------------CEECSCS---CEEEEEEETTEEEEEECSS--SCEEEEEETTSCC-
T ss_pred EEcCC---CcEEEEEECCCCC--------------eEEEeCC---CcceEEECCCEEEEEECCC--CcEEEEEECCCCc-
Confidence 76432 2679999998742 2334332 1245889999999887653 3799999999876
Q ss_pred eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce
Q 003878 397 WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 397 ~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
.+.|. .. .+..+.++. ++++++....+ .|++++++ |..
T Consensus 258 r~~l~-~~---~~~~i~i~~-d~Iy~td~~~~--~i~~~~~d-Gs~ 295 (302)
T 3s25_A 258 FKELA-KG---EFCNINVTS-QYVYFTDFVSN--KEYCTSTQ-NPD 295 (302)
T ss_dssp CEEEE-ES---CEEEEEECS-SEEEEEETTTC--CEEEEESS-SCC
T ss_pred cEEee-CC---ccceEEEeC-CEEEEEECCCC--eEEEEECC-CCC
Confidence 34443 32 144677776 88888765444 48888876 543
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.07 E-value=5.6e-08 Score=103.28 Aligned_cols=283 Identities=9% Similarity=0.089 Sum_probs=160.3
Q ss_pred CCcEEEEeEEeCCC-CcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccc
Q 003878 129 DGTAALIKVSVSED-AKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLY 207 (789)
Q Consensus 129 ~~~~~~~~~~~SpD-g~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 207 (789)
++...|..+++||| |++|| + |+...+|+|||+.+++......... +..+.+. ..+..+.|++
T Consensus 36 GH~~~V~~v~~sp~~~~~l~-S----~s~D~~i~vWd~~~~~~~~~~~~~~---l~~h~~~----V~~~~~s~dg----- 98 (340)
T 4aow_A 36 GHNGWVTQIATTPQFPDMIL-S----ASRDKTIIMWKLTRDETNYGIPQRA---LRGHSHF----VSDVVISSDG----- 98 (340)
T ss_dssp CCSSCEEEEEECTTCTTEEE-E----EETTSCEEEEEECCSSSCSEEEEEE---ECCCSSC----EEEEEECTTS-----
T ss_pred CccCCEEEEEEeCCCCCEEE-E----EcCCCeEEEEECCCCCcccceeeEE---EeCCCCC----EEEEEECCCC-----
Confidence 45566889999998 56665 3 2334479999998764321000000 0011111 1122234565
Q ss_pred cccceeeEEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEE
Q 003878 208 LRGIFFFFYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEF 277 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i 277 (789)
++++++..+|...+|.... .-......++++++.|+....+ ..+
T Consensus 99 -------~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-------------------~~~ 152 (340)
T 4aow_A 99 -------QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD-------------------KTI 152 (340)
T ss_dssp -------SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETT-------------------SCE
T ss_pred -------CEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCC-------------------CeE
Confidence 3677778888888887655 1112456777888777655332 235
Q ss_pred EEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec
Q 003878 278 YYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID 357 (789)
Q Consensus 278 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~ 357 (789)
.++++.... ........+...+..+.+++++...++.+... ...|.++|+.++. ....+..
T Consensus 153 ~~~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~---d~~i~i~d~~~~~-------------~~~~~~~ 213 (340)
T 4aow_A 153 KLWNTLGVC---KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW---DKLVKVWNLANCK-------------LKTNHIG 213 (340)
T ss_dssp EEECTTSCE---EEEECSSSCSSCEEEEEECSCSSSCEEEEEET---TSCEEEEETTTTE-------------EEEEECC
T ss_pred EEEEeCCCc---eEEEEeccccCcccceEEccCCCCcEEEEEcC---CCEEEEEECCCCc-------------eeeEecC
Confidence 666654321 22222222334455678888876544333222 2448888988742 1222222
Q ss_pred ccccee-EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEE
Q 003878 358 GFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRD 436 (789)
Q Consensus 358 ~~~~~~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~d 436 (789)
...... ..|+|+|+.|+..+. ++.|..+|+.+......+ ... ..+..+.+++++.+++. ..++ .|++||
T Consensus 214 h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~~~~~~~~~-~~~--~~v~~~~~~~~~~~~~~-~~d~--~i~iwd 283 (340)
T 4aow_A 214 HTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLNEGKHLYTL-DGG--DIINALCFSPNRYWLCA-ATGP--SIKIWD 283 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEET----TCEEEEEETTTTEEEEEE-ECS--SCEEEEEECSSSSEEEE-EETT--EEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeC----CCeEEEEEeccCceeeee-cCC--ceEEeeecCCCCceeec-cCCC--EEEEEE
Confidence 111122 348999998775433 467999999876522222 222 45777888885555544 4455 689999
Q ss_pred CCCCceeeeccc---------CCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 437 LKNGSLLHQLPI---------EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 437 l~tG~~~~~l~~---------~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
++++.....+.. ....|..++++++++.|+-.. .-+.|+.||+++|+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs----~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 284 LEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY----TDNLVRVWQVTIGT 339 (340)
T ss_dssp TTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEE----TTSCEEEEEEEC--
T ss_pred CCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEe----CCCEEEEEeCCCcC
Confidence 986654333321 245677889999998665332 23579999998884
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.06 E-value=4e-08 Score=107.16 Aligned_cols=284 Identities=10% Similarity=0.016 Sum_probs=165.7
Q ss_pred cEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCc------eecccccccccccccCccceeeeeeccccccc---
Q 003878 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI------VEADALSWVCFCFSHSFGYFFHLTISLLNVPT--- 201 (789)
Q Consensus 131 ~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--- 201 (789)
...+..++++| ++|+.+. ...+|++||+.+++ .+. .+... .+.. .+..+.|+
T Consensus 16 ~~~i~~~~~~~--~~l~s~~-----~dg~i~iw~~~~~~~~~~~~~~~-~~~~h-------~~~v----~~~~~~~~~~~ 76 (397)
T 1sq9_A 16 DADIFSVSACN--SFTVSCS-----GDGYLKVWDNKLLDNENPKDKSY-SHFVH-------KSGL----HHVDVLQAIER 76 (397)
T ss_dssp SSCEEEEEECS--SEEEEEE-----TTSEEEEEESBCCTTCCGGGGEE-EEECC-------TTCE----EEEEEEEEEET
T ss_pred hcCeEEEEecC--CeEEEEc-----CCCEEEEEECCCcccccCCCcce-EEecC-------CCcE----EEEEEeccccc
Confidence 34577888999 6666432 23489999999986 111 11110 0100 11112222
Q ss_pred -cccccccccceeeEEEeeeccccceeeeeeec-c-------------------cccceEEEE----eCCcE-EEEEEcc
Q 003878 202 -YKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVS-Q-------------------FKFSSIAWT----HDSKG-FFYSRYP 255 (789)
Q Consensus 202 -~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~-~-------------------~~~~~~~ws----pDg~~-i~y~~~~ 255 (789)
+ .-..+++++..+|...+|.+.. . -....++|+ ||++. |+....+
T Consensus 77 ~g---------~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~d 147 (397)
T 1sq9_A 77 DA---------FELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK 147 (397)
T ss_dssp TT---------EEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred CC---------ccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCC
Confidence 2 0013677778889888887654 1 224568999 99998 7665432
Q ss_pred CCCCCCCCCCCccccCCcccEEEEEECCC------CCCCc---EEEEec-----CCCCeeEEEEEEecCCcEEEEEEEcC
Q 003878 256 APKEGKDMDAGTETDSNLYHEFYYHFLGT------KQSED---ILCWKD-----PEHPKYIFSGHVTEDGQYLVMCIEEN 321 (789)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~i~~~~lg~------~~~~~---~~~~~~-----~~~~~~~~~~~~SpDG~~l~~~~~~~ 321 (789)
..|++|++.+ ..... ...+.. ..+...+..+.|+|+| .++....
T Consensus 148 -------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~-- 205 (397)
T 1sq9_A 148 -------------------GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN-- 205 (397)
T ss_dssp -------------------SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT--
T ss_pred -------------------CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC--
Confidence 2477777765 22211 002221 1123335578999999 6554432
Q ss_pred CCCceEEEEEECCCCCCCcccccccCCCCccEeeec-------cccceeEEEecCCCEEEEEECCCCCCceEEEEECCCC
Q 003878 322 CDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-------GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 394 (789)
Q Consensus 322 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~ 394 (789)
...|+++|+.++. +...+.. ........|+|+|+.|+..+.. ...+.|..+|+.++
T Consensus 206 ---dg~i~i~d~~~~~-------------~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d-~~~g~i~i~d~~~~ 268 (397)
T 1sq9_A 206 ---NGTVQISELSTLR-------------PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS-NSFGCITLYETEFG 268 (397)
T ss_dssp ---TSEEEEEETTTTE-------------EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE-TTEEEEEEEETTTC
T ss_pred ---CCcEEEEECCCCc-------------eeEEEeccccccccCCccceEEECCCCCEEEEEecC-CCCceEEEEECCCC
Confidence 3569999998641 1222221 1111223489999988765432 12268999999887
Q ss_pred CCeEEeccCC-----------CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecc------cC--------
Q 003878 395 NDWFEVIPEA-----------ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP------IE-------- 449 (789)
Q Consensus 395 ~~~~~l~~~~-----------~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~------~~-------- 449 (789)
+....+.... ....+..+.+++++.++++...++ .|++||+.+++.+..+. ..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~ 346 (397)
T 1sq9_A 269 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG--KLRFWDVKTKERITTLNMHCDDIEIEEDILAVD 346 (397)
T ss_dssp CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS--EEEEEETTTTEEEEEEECCGGGCSSGGGCCCBC
T ss_pred cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCC--eEEEEEcCCCceeEEEecccCcccchhhhhccc
Confidence 6333333200 235678899998777787888777 79999999887766665 33
Q ss_pred -------CeeEEEeecccCCc---------EEEEEEcCCCCCcEEEEEECCCC
Q 003878 450 -------IGSVNAISARREDS---------VVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 450 -------~~~v~~~s~s~d~~---------~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
...+..+.++++++ .++++.+ .-+.+..|++.+|
T Consensus 347 ~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~---~dg~i~iw~~~~g 396 (397)
T 1sq9_A 347 EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC---LDRSIRWFREAGG 396 (397)
T ss_dssp TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE---TTTEEEEEEEEC-
T ss_pred cccccccCCceeEEEeccccccccccccccceEEEec---CCCcEEEEEcCCC
Confidence 56688889999873 2344332 2468888888776
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.7e-08 Score=115.14 Aligned_cols=245 Identities=8% Similarity=-0.038 Sum_probs=157.5
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCC----ceecccccccccccccCccceeeeeeccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQ----IVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLY 207 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 207 (789)
..+..+++||||++||++. +| .|++||++++ +... .+... .+
T Consensus 19 ~~v~~~~~spdg~~l~~~~--~~----~v~v~~~~~~~~~~~~~~-~~~~h-------~~-------------------- 64 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPC--GK----SAFVRCLDDGDSKVPPVV-QFTGH-------GS-------------------- 64 (615)
T ss_dssp TCCCCCEEETTTTEEEEEE--TT----EEEEEECCSSCCSSCSEE-EECTT-------TT--------------------
T ss_pred CceeEEEECCCCCEEEEec--CC----eEEEEECCCCCCccccce-EEecC-------CC--------------------
Confidence 3467789999999999876 22 7999999987 4332 12211 00
Q ss_pred cccceeeEEEeeeccccceeeeeeecccc-cceEEEEe--CCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCC
Q 003878 208 LRGIFFFFYLFSLVKSTIYSFWSVVSQFK-FSSIAWTH--DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT 284 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g~~~l~~~~~~~~-~~~~~wsp--Dg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~ 284 (789)
. ...++|+| ||+.|+....+ ..|.+|++.+
T Consensus 65 ----------------------------~~v~~~~~sp~~~~~~l~s~~~d-------------------g~v~vw~~~~ 97 (615)
T 1pgu_A 65 ----------------------------SVVTTVKFSPIKGSQYLCSGDES-------------------GKVIVWGWTF 97 (615)
T ss_dssp ----------------------------SCEEEEEECSSTTCCEEEEEETT-------------------SEEEEEEEEE
T ss_pred ----------------------------ceEEEEEECcCCCCCEEEEecCC-------------------CEEEEEeCCC
Confidence 2 46899999 99998876432 3577887754
Q ss_pred C------CCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc
Q 003878 285 K------QSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG 358 (789)
Q Consensus 285 ~------~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~ 358 (789)
+ ..+....+.. +...+..+.|+|||++|+....+.. ....|++++... ....+...
T Consensus 98 ~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~-~~~~v~~~d~~~---------------~~~~~~~~ 159 (615)
T 1pgu_A 98 DKESNSVEVNVKSEFQV--LAGPISDISWDFEGRRLCVVGEGRD-NFGVFISWDSGN---------------SLGEVSGH 159 (615)
T ss_dssp EGGGTEEEEEEEEEEEC--CSSCEEEEEECTTSSEEEEEECCSS-CSEEEEETTTCC---------------EEEECCSC
T ss_pred Ccccccccccccchhhc--ccccEEEEEEeCCCCEEEEeccCCC-CccEEEEEECCC---------------cceeeecC
Confidence 3 1122222332 2344678999999999988764332 235688777322 11222221
Q ss_pred ccce-eEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCc---eeeeEEEecC-CEEEEEEEeCCeEEEE
Q 003878 359 FDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERD---VLESATAVNL-NQMIVSYLSDVKYVLQ 433 (789)
Q Consensus 359 ~~~~-~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~---~i~~v~~~~~-~~lv~~~~~~g~~~L~ 433 (789)
.... ...|+|+++.+++.... +..|..+|+.+++....+..+. . .+..+.++++ +.++++...++ .|+
T Consensus 160 ~~~v~~~~~~~~~~~~l~~~~~---d~~v~vwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~ 232 (615)
T 1pgu_A 160 SQRINACHLKQSRPMRSMTVGD---DGSVVFYQGPPFKFSASDRTHH--KQGSFVRDVEFSPDSGEFVITVGSDR--KIS 232 (615)
T ss_dssp SSCEEEEEECSSSSCEEEEEET---TTEEEEEETTTBEEEEEECSSS--CTTCCEEEEEECSTTCCEEEEEETTC--CEE
T ss_pred CccEEEEEECCCCCcEEEEEeC---CCcEEEEeCCCcceeeeecccC--CCCceEEEEEECCCCCCEEEEEeCCC--eEE
Confidence 1112 23489998844444332 4679999988765233333333 3 6888999987 67787777776 789
Q ss_pred EEECCCCceeeec-c---cCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 434 IRDLKNGSLLHQL-P---IEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 434 ~~dl~tG~~~~~l-~---~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+||+.+++....+ . .....+..+.++ +++.++.... -+.+..||+.+++
T Consensus 233 vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~----d~~i~~wd~~~~~ 285 (615)
T 1pgu_A 233 CFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGA----DATIRVWDVTTSK 285 (615)
T ss_dssp EEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEET----TSEEEEEETTTTE
T ss_pred EEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcC----CCcEEEEECCCCc
Confidence 9999988876666 3 345667788888 7876664432 3689999998874
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.7e-09 Score=115.86 Aligned_cols=243 Identities=6% Similarity=-0.084 Sum_probs=141.9
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCc--eecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI--VEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
+..+++||||++||. |+....|++||+.++. .+. .+... .+
T Consensus 14 v~~~~~s~~g~~l~~-----~~~d~~i~iw~~~~~~~~~~~-~~~~h-------~~------------------------ 56 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVT-----TTATNQVELYEQDGNGWKHAR-TFSDH-------DK------------------------ 56 (377)
T ss_dssp CSCCEECSSSSEEEC-----CCSSSCBCEEEEETTEEEECC-CBCCC-------SS------------------------
T ss_pred EEEEEECCCCCEEEE-----ecCCCEEEEEEccCCceEEEE-EEecC-------Cc------------------------
Confidence 567889999999984 4345689999999873 222 22221 00
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCC-CCcE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ-SEDI 290 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~-~~~~ 290 (789)
....++|+|||+.|+....+ ..|++|++.+.. ....
T Consensus 57 ------------------------~v~~~~~s~~~~~l~s~s~d-------------------~~v~vwd~~~~~~~~~~ 93 (377)
T 3dwl_C 57 ------------------------IVTCVDWAPKSNRIVTCSQD-------------------RNAYVYEKRPDGTWKQT 93 (377)
T ss_dssp ------------------------CEEEEEECTTTCCEEEEETT-------------------SSEEEC------CCCCE
T ss_pred ------------------------eEEEEEEeCCCCEEEEEeCC-------------------CeEEEEEcCCCCceeee
Confidence 25789999999988876433 247788877654 1222
Q ss_pred EEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-ccccee-EEEec
Q 003878 291 LCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQY-EVIAN 368 (789)
Q Consensus 291 ~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~~-~~~s~ 368 (789)
..+. .+...+..+.|+|||++|+....+ ..|.++|+.++.. ......+.. ...... ..|+|
T Consensus 94 ~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~----------~~~~~~~~~~h~~~v~~~~~~~ 156 (377)
T 3dwl_C 94 LVLL--RLNRAATFVRWSPNEDKFAVGSGA-----RVISVCYFEQEND----------WWVSKHLKRPLRSTILSLDWHP 156 (377)
T ss_dssp EECC--CCSSCEEEEECCTTSSCCEEEESS-----SCEEECCC---------------CCCCEEECSSCCSCEEEEEECT
T ss_pred eEec--ccCCceEEEEECCCCCEEEEEecC-----CeEEEEEECCccc----------ceeeeEeecccCCCeEEEEEcC
Confidence 2222 233446789999999999876643 3478888876420 001222222 111122 34899
Q ss_pred CCCEEEEEECCCCCCceEEEEECCCCC--------------C-eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEE
Q 003878 369 DDTVFTFLTNKDAPKYKIIRVDLKEPN--------------D-WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQ 433 (789)
Q Consensus 369 dG~~l~~~tn~~~~~~~L~~~dl~~~~--------------~-~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~ 433 (789)
+|+.|+..+.. ..|..+|+...+ . -+.+..-.....+..+.+++++.++++...++ .|+
T Consensus 157 ~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~--~i~ 230 (377)
T 3dwl_C 157 NNVLLAAGCAD----RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDS--SVT 230 (377)
T ss_dssp TSSEEEEEESS----SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTT--EEC
T ss_pred CCCEEEEEeCC----CEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCC--cEE
Confidence 99887765543 457777764211 0 01111112234578899998777788888887 788
Q ss_pred EEECCCCce----eeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 434 IRDLKNGSL----LHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 434 ~~dl~tG~~----~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
+||+.+++. ...+..+...+..+.++++++.++.. + -..+.+|+..
T Consensus 231 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~----~~~~~~~~~~ 280 (377)
T 3dwl_C 231 IAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAG-Y----NYSPILLQGN 280 (377)
T ss_dssp -CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEE-S----SSSEEEECCC
T ss_pred EEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEE-c----CCcEEEEEeC
Confidence 999987765 44555556667788999998755432 2 2334466654
|
| >3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.2e-09 Score=110.00 Aligned_cols=212 Identities=14% Similarity=0.035 Sum_probs=125.2
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCe--EEEEEeecCCCC--C-ChhHHhc-------ccccCCcc----hHHH
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGA--VFCIANIRGGGE--Y-GEEWHKG-------GALAKKQN----CFDD 601 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~--~v~~~~~RG~g~--~-g~~~~~~-------~~~~~~~~----~~~D 601 (789)
.+.||++||..+... .|.. ....|.+.|+ .|+.+|+++.|. + |.--... +...+... ..++
T Consensus 6 ~~pvvliHG~~~~~~--~~~~-l~~~L~~~g~~~~vi~~dv~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~~ 82 (249)
T 3fle_A 6 TTATLFLHGYGGSER--SETF-MVKQALNKNVTNEVITARVSSEGKVYFDKKLSEDAANPIVKVEFKDNKNGNFKENAYW 82 (249)
T ss_dssp CEEEEEECCTTCCGG--GTHH-HHHHHHTTTSCSCEEEEEECSSCCEEESSCCC--CCSCEEEEEESSTTCCCHHHHHHH
T ss_pred CCcEEEECCCCCChh--HHHH-HHHHHHHcCCCceEEEEEECCCCCEEEccccccccCCCeEEEEcCCCCCccHHHHHHH
Confidence 456778999765433 3443 4456666886 588888886553 1 2100000 00111111 2456
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC-----ceeEEEecCCcccccccccccCCccchhhcCCCCc
Q 003878 602 FISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD-----LFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEE 676 (789)
Q Consensus 602 ~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd-----~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~ 676 (789)
+.+++++|.++- ..+++.++||||||.+++.++.++|+ +++.+|+..+..+.................|.|..
T Consensus 83 l~~~i~~l~~~~--~~~~~~lvGHSmGG~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~~~~~~~~~~g~p~~ 160 (249)
T 3fle_A 83 IKEVLSQLKSQF--GIQQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVNIAGVYNGILNMNENVNEIIVDKQGKPSR 160 (249)
T ss_dssp HHHHHHHHHHTT--CCCEEEEEEETHHHHHHHHHHHHHSSCSSSCEEEEEEEESCCTTCCTTTSSCTTTSCBCTTCCBSS
T ss_pred HHHHHHHHHHHh--CCCceEEEEECccHHHHHHHHHHCcccccccccceEEEeCCccCCcccccCCcchhhhcccCCCcc
Confidence 777888887762 34589999999999999999998874 67888877655544322211111111123355522
Q ss_pred -HHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecC------CCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcE
Q 003878 677 -EEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTAD------HDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPI 749 (789)
Q Consensus 677 -~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~------~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 749 (789)
...++.|.+..+ .... ...|+|.++|+ .|..||...++.+...++.. ....
T Consensus 161 ~~~~~~~l~~~~~--~~p~----------~~~~vl~I~G~~~~~~~sDG~V~~~Sa~~~~~l~~~~----------~~~y 218 (249)
T 3fle_A 161 MNAAYRQLLSLYK--IYCG----------KEIEVLNIYGDLEDGSHSDGRVSNSSSQSLQYLLRGS----------TKSY 218 (249)
T ss_dssp CCHHHHHTGGGHH--HHTT----------TTCEEEEEEEECCSSSCBSSSSBHHHHHTHHHHSTTC----------SSEE
T ss_pred cCHHHHHHHHHHh--hCCc----------cCCeEEEEeccCCCCCCCCCcccHHHHHHHHHHHhhC----------CCce
Confidence 234444433311 1221 14699999998 79999998887776666654 4555
Q ss_pred EEEEeCC--CCcCCCCchhhHHHHHHHHHHHH
Q 003878 750 IGRIERK--AGHGVGLPTQKMIDEAADRYGFM 779 (789)
Q Consensus 750 ~l~~~~~--~gH~~~~~~~~~~~~~~~~~~fl 779 (789)
...++.+ +.|...-... +....+..||
T Consensus 219 ~e~~v~g~~a~Hs~l~~n~---~V~~~I~~FL 247 (249)
T 3fle_A 219 QEMKFKGAKAQHSQLHENK---DVANEIIQFL 247 (249)
T ss_dssp EEEEEESGGGSTGGGGGCH---HHHHHHHHHH
T ss_pred EEEEEeCCCCchhccccCH---HHHHHHHHHh
Confidence 5566655 8898754433 4455666776
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.3e-07 Score=97.41 Aligned_cols=194 Identities=9% Similarity=0.044 Sum_probs=124.0
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...++|+|||+.|+-...+ ..|++|++.++.. ...+.. +...+..+.++|++++|+.
T Consensus 68 v~~~~~s~dg~~l~s~s~D-------------------~~v~~wd~~~~~~--~~~~~~--h~~~v~~~~~~~~~~~l~s 124 (319)
T 3frx_A 68 VQDCTLTADGAYALSASWD-------------------KTLRLWDVATGET--YQRFVG--HKSDVMSVDIDKKASMIIS 124 (319)
T ss_dssp EEEEEECTTSSEEEEEETT-------------------SEEEEEETTTTEE--EEEEEC--CSSCEEEEEECTTSCEEEE
T ss_pred EEEEEECCCCCEEEEEeCC-------------------CEEEEEECCCCCe--eEEEcc--CCCcEEEEEEcCCCCEEEE
Confidence 4678999999998865433 4689999876532 223333 2344678999999999876
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecC------CCEEEEEECCCCCCceEEEE
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIAND------DTVFTFLTNKDAPKYKIIRV 389 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~d------G~~l~~~tn~~~~~~~L~~~ 389 (789)
.+.+ ..|.++|+.+.. ...+........ ..+.|+ +..++..+ .+..|..+
T Consensus 125 ~s~D-----~~i~vwd~~~~~--------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~----~d~~i~~w 181 (319)
T 3frx_A 125 GSRD-----KTIKVWTIKGQC--------------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAG----NDKMVKAW 181 (319)
T ss_dssp EETT-----SCEEEEETTSCE--------------EEEECCCSSCEEEEEECCC------CCEEEEEE----TTSCEEEE
T ss_pred EeCC-----CeEEEEECCCCe--------------EEEEeccCCcEEEEEEccCCCCCCCccEEEEEe----CCCEEEEE
Confidence 6543 347788886421 122221111111 224443 33444322 24578889
Q ss_pred ECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEE
Q 003878 390 DLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISF 469 (789)
Q Consensus 390 dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ 469 (789)
|+.+.+....+..+. ..+..+.+++++.++++...++ .|++||+.+++....+..+ ..+..++++|++..++...
T Consensus 182 d~~~~~~~~~~~~h~--~~v~~~~~sp~g~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~ 256 (319)
T 3frx_A 182 NLNQFQIEADFIGHN--SNINTLTASPDGTLIASAGKDG--EIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAAT 256 (319)
T ss_dssp ETTTTEEEEEECCCC--SCEEEEEECTTSSEEEEEETTC--EEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEE
T ss_pred ECCcchhheeecCCC--CcEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEc
Confidence 998765223344443 5678899998778888888887 7999999887765555533 4577889999998776543
Q ss_pred cCCCCCcEEEEEECCCC
Q 003878 470 TSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 470 ss~~~P~~ly~~dl~tg 486 (789)
. ..+..+++.++
T Consensus 257 ~-----~~i~v~~~~~~ 268 (319)
T 3frx_A 257 A-----TGIKVFSLDPQ 268 (319)
T ss_dssp T-----TEEEEEEETTE
T ss_pred C-----CCcEEEEeCcC
Confidence 2 35777777665
|
| >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.2e-10 Score=117.52 Aligned_cols=116 Identities=12% Similarity=0.084 Sum_probs=80.1
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCC
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 595 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~ 595 (789)
.+| .+|.+... +.+ ...|.||++||..+... .|.. ....|+ .+|.|+++|.||.|..... ..
T Consensus 11 ~~g-~~l~y~~~-~~G----~~~p~vvllHG~~~~~~--~w~~-~~~~L~-~~~rvia~DlrGhG~S~~~--------~~ 72 (276)
T 2wj6_A 11 VFD-NKLSYIDN-QRD----TDGPAILLLPGWCHDHR--VYKY-LIQELD-ADFRVIVPNWRGHGLSPSE--------VP 72 (276)
T ss_dssp ETT-EEEEEEEC-CCC----CSSCEEEEECCTTCCGG--GGHH-HHHHHT-TTSCEEEECCTTCSSSCCC--------CC
T ss_pred eCC-eEEEEEEe-cCC----CCCCeEEEECCCCCcHH--HHHH-HHHHHh-cCCEEEEeCCCCCCCCCCC--------CC
Confidence 478 77765432 112 23478999999765543 3444 345666 7899999999998864321 12
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-CCceeEEEecCC
Q 003878 596 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR-PDLFGCALAHVG 651 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-pd~f~a~v~~~p 651 (789)
..+++++.+-+..|++. ..-+++.++|||+||.+++.++.++ |++++++|+..+
T Consensus 73 ~~~~~~~a~dl~~ll~~--l~~~~~~lvGhSmGG~va~~~A~~~~P~rv~~lvl~~~ 127 (276)
T 2wj6_A 73 DFGYQEQVKDALEILDQ--LGVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDW 127 (276)
T ss_dssp CCCHHHHHHHHHHHHHH--HTCCSEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEESC
T ss_pred CCCHHHHHHHHHHHHHH--hCCCceEEEEECHHHHHHHHHHHHhCHHhhceEEEecc
Confidence 23566665555555544 2235899999999999999999999 999999988754
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-07 Score=104.41 Aligned_cols=293 Identities=13% Similarity=-0.008 Sum_probs=174.3
Q ss_pred EEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccc
Q 003878 119 VLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLN 198 (789)
Q Consensus 119 ~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (789)
-+||...+..|- .+.-+.||++ +.||.+.+ .+|+|||+.||+.+.. +... .+.+ -..+..+
T Consensus 95 ~~l~ap~~~~d~--y~~~l~wS~~-n~lAvgld------~tV~lWd~~tg~~~~~-~~~~-----~~~~----~V~sv~f 155 (420)
T 4gga_A 95 RILDAPEIRNDY--YLNLVDWSSG-NVLAVALD------NSVYLWSASSGDILQL-LQME-----QPGE----YISSVAW 155 (420)
T ss_dssp EEEECTTCCCCT--TCBCEEECTT-SEEEEEET------TEEEEEETTTCCEEEE-EECC-----STTC----CEEEEEE
T ss_pred eEEECCCCcccc--cceeEEECCC-CEEEEEeC------CEEEEEECCCCCEEEE-EEec-----CCCC----cEEEEEE
Confidence 456766665552 2455789986 48887653 2799999999976531 1110 0111 1223344
Q ss_pred ccccccccccccceeeEEEeeeccccceeeeeeec--------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCcccc
Q 003878 199 VPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVS--------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 270 (789)
Q Consensus 199 ~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~--------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~ 270 (789)
.|++ .+++++..+|+..||.+.. .....-.++++|++.|+....
T Consensus 156 spdg------------~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~---------------- 207 (420)
T 4gga_A 156 IKEG------------NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSR---------------- 207 (420)
T ss_dssp CTTS------------SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEET----------------
T ss_pred CCCC------------CEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeC----------------
Confidence 5676 4677888999999998754 111123345556766654432
Q ss_pred CCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCC
Q 003878 271 SNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 350 (789)
Q Consensus 271 ~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 350 (789)
...++.++..+... .+..+... ...+..+.++|+|++++....+ ..+.+++..++... ..
T Consensus 208 ---d~~i~~~d~~~~~~-~~~~~~~h--~~~~~~~~~~~~g~~l~s~~~D-----~~v~i~~~~~~~~~---------~~ 267 (420)
T 4gga_A 208 ---SGHIHHHDVRVAEH-HVATLSGH--SQEVCGLRWAPDGRHLASGGND-----NLVNVWPSAPGEGG---------WV 267 (420)
T ss_dssp ---TSEEEEEETTSSSC-EEEEEECC--SSCEEEEEECTTSSEEEEEETT-----SCEEEEESSCCSSC---------SC
T ss_pred ---CCceeEeeecccce-eeEEeccc--ccceeeeeecCCCCeeeeeecc-----ccceEEeecccccc---------ce
Confidence 33577777765432 22333332 3345678999999999876543 34788888764311 11
Q ss_pred ccEeeeccccce-eEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCe
Q 003878 351 PFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVK 429 (789)
Q Consensus 351 ~~~~l~~~~~~~-~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~ 429 (789)
............ ...|+|++..++.+... ..+..|..+|+.++.....+..+ ..+..+.+.+++..+++......
T Consensus 268 ~~~~~~~~~~~V~~~~~~p~~~~~la~~~g-s~D~~I~iwd~~t~~~~~~~~~~---~~v~~~~~~~~~~~lv~~sg~~d 343 (420)
T 4gga_A 268 PLQTFTQHQGAVKAVAWCPWQSNVLATGGG-TSDRHIRIWNVCSGACLSAVDAH---SQVCSILWSPHYKELISGHGFAQ 343 (420)
T ss_dssp CSEEECCCSSCEEEEEECTTCTTEEEEEEC-TTTCEEEEEETTTTEEEEEEECS---SCEEEEEEETTTTEEEEEECTTT
T ss_pred eeeeecccCCceeeeeeCCCcccEEEEEee-cCCCEEEEEeCCccccceeeccc---cceeeeeecCCCCeEEEEEecCC
Confidence 111221111111 23478877665544322 23578999999887623333222 34566777765444444442222
Q ss_pred EEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 430 YVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 430 ~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
..|++||+.+++.+..+..+.+.|..++++||+..|+ +.+ .-.+|..||+.+.
T Consensus 344 ~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~-S~s---~D~tvriWdv~~~ 396 (420)
T 4gga_A 344 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA-SAA---ADETLRLWRCFEL 396 (420)
T ss_dssp CCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE-EEE---TTTEEEEECCSCS
T ss_pred CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE-EEe---cCCeEEEEECCCC
Confidence 3799999998988778877777888999999998655 332 2367888887654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=8.1e-08 Score=106.52 Aligned_cols=249 Identities=9% Similarity=0.031 Sum_probs=139.4
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCcee----------cccccccccccccCccceeee-----eeccc
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE----------ADALSWVCFCFSHSFGYFFHL-----TISLL 197 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~----------~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 197 (789)
.|..++|||||++||.+.. ...|+|||+.++... ...+... +..++|+..+ ..+..
T Consensus 30 ~V~~v~~s~~g~~la~g~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h----~~~~~~~~~~~~~~~V~~l~ 100 (447)
T 3dw8_B 30 IISTVEFNHSGELLATGDK-----GGRVVIFQQEQENKIQSHSRGEYNVYSTFQSH----EPEFDYLKSLEIEEKINKIR 100 (447)
T ss_dssp SEEEEEECSSSSEEEEEET-----TSEEEEEEECC-----CCCCCCEEEEEEEECC----CCEEEGGGTEEECCCCCEEE
T ss_pred cEEEEEECCCCCEEEEEcC-----CCeEEEEEecCCCCCCcccccceeEecccccc----cccccccccccccCceEEEE
Confidence 4788999999999986432 347999999987521 0011110 0000111100 11122
Q ss_pred cccccccccccccceeeEEEeeeccccceeeeeeec--------------------------------------------
Q 003878 198 NVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVS-------------------------------------------- 233 (789)
Q Consensus 198 ~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~-------------------------------------------- 233 (789)
+.|++. ...++++..+|+..||.+..
T Consensus 101 ~~~~~~----------~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (447)
T 3dw8_B 101 WLPQKN----------AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRR 170 (447)
T ss_dssp ECCCCS----------SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEE
T ss_pred EcCCCC----------cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceE
Confidence 233320 03567778899999998753
Q ss_pred ------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEE-----ecCCCCeeE
Q 003878 234 ------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCW-----KDPEHPKYI 302 (789)
Q Consensus 234 ------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~-----~~~~~~~~~ 302 (789)
......++|+|||+.|+.. . ...|.+|++.+... ...++ ....+...+
T Consensus 171 ~~~~~h~~~v~~~~~~~~~~~l~s~-~-------------------d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v 229 (447)
T 3dw8_B 171 IFANAHTYHINSISINSDYETYLSA-D-------------------DLRINLWHLEITDR-SFNIVDIKPANMEELTEVI 229 (447)
T ss_dssp EECSCCSSCCCEEEECTTSSEEEEE-C-------------------SSEEEEEETTEEEE-EEEEEECCCSSGGGCCCCE
T ss_pred EeccCCCcceEEEEEcCCCCEEEEe-C-------------------CCeEEEEECCCCCc-eeeeeecccccccccCcce
Confidence 1113578999999988754 2 23588888864221 11111 111233446
Q ss_pred EEEEEecCC-cEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-------------cceeEEEec
Q 003878 303 FSGHVTEDG-QYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-------------DAQYEVIAN 368 (789)
Q Consensus 303 ~~~~~SpDG-~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~s~ 368 (789)
..+.|+|+| +.|+....+ ..|.++|+.++... ......+.... ......|+|
T Consensus 230 ~~~~~~p~~~~~l~s~~~d-----g~i~iwd~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 295 (447)
T 3dw8_B 230 TAAEFHPNSCNTFVYSSSK-----GTIRLCDMRASALC---------DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH 295 (447)
T ss_dssp EEEEECSSCTTEEEEEETT-----SCEEEEETTTCSSS---------CTTCEEECCC-----CCHHHHHTTCEEEEEECT
T ss_pred EEEEECCCCCcEEEEEeCC-----CeEEEEECcCCccc---------cceeeEeccCCCccccccccccCceEEEEEECC
Confidence 789999999 777765533 34889998875310 00011111111 112234899
Q ss_pred CCCEEEEEECCCCCCceEEEEECCC-CCCeEEeccCCCCc-------------eeeeEEEecCCEEEEEEEeCCeEEEEE
Q 003878 369 DDTVFTFLTNKDAPKYKIIRVDLKE-PNDWFEVIPEAERD-------------VLESATAVNLNQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 369 dG~~l~~~tn~~~~~~~L~~~dl~~-~~~~~~l~~~~~~~-------------~i~~v~~~~~~~lv~~~~~~g~~~L~~ 434 (789)
+|+.|+..+. ..|..+|+.. +.....+..+.... .+..+.+++++..+++...++ .|++
T Consensus 296 ~g~~l~~~~~-----~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg--~v~i 368 (447)
T 3dw8_B 296 SGRYMMTRDY-----LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNN--FFRM 368 (447)
T ss_dssp TSSEEEEEES-----SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTT--EEEE
T ss_pred CCCEEEEeeC-----CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCC--EEEE
Confidence 9998775432 5788999876 43222222221100 012378888767778888887 7999
Q ss_pred EECCCCce
Q 003878 435 RDLKNGSL 442 (789)
Q Consensus 435 ~dl~tG~~ 442 (789)
||+.+++.
T Consensus 369 wd~~~~~~ 376 (447)
T 3dw8_B 369 FDRNTKRD 376 (447)
T ss_dssp EETTTCCE
T ss_pred EEcCCCcc
Confidence 99987764
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2e-08 Score=127.06 Aligned_cols=287 Identities=11% Similarity=0.078 Sum_probs=174.8
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+...+..+++||||++||.+. ...+|++||+.+++.+. .+... .+. ..+..+.|++
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~-----~d~~i~vw~~~~~~~~~-~~~~h-------~~~----v~~~~~s~~~------- 669 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCG-----ADKTLQVFKAETGEKLL-DIKAH-------EDE----VLCCAFSSDD------- 669 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEE-----TTSCEEEEETTTCCEEE-EECCC-------SSC----EEEEEECTTS-------
T ss_pred ccccEEEEEECCCCCEEEEEe-----CCCeEEEEECCCCCEEE-EeccC-------CCC----EEEEEEecCC-------
Confidence 334578899999999998543 23479999999997543 12211 110 1222334666
Q ss_pred cceeeEEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEE
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYY 279 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (789)
++++++..+|...+|.+.. ......++|+|+++..++... .....|.+
T Consensus 670 -----~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg-----------------~~d~~v~v 727 (1249)
T 3sfz_A 670 -----SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATG-----------------SNDFFLKL 727 (1249)
T ss_dssp -----SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEE-----------------ETTSCEEE
T ss_pred -----CEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEE-----------------eCCCeEEE
Confidence 3677788899999998754 122357889997654333321 12235888
Q ss_pred EECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec--
Q 003878 280 HFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-- 357 (789)
Q Consensus 280 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-- 357 (789)
|++.++.. ...+. .+...+..+.|+|||++|+..+.+ ..|.++|+.++... ..+..............
T Consensus 728 wd~~~~~~--~~~~~--~h~~~v~~~~~sp~~~~l~s~s~d-----g~v~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~ 797 (1249)
T 3sfz_A 728 WDLNQKEC--RNTMF--GHTNSVNHCRFSPDDELLASCSAD-----GTLRLWDVRSANER-KSINVKRFFLSSEDPPEDV 797 (1249)
T ss_dssp EETTSSSE--EEEEC--CCSSCEEEEEECSSTTEEEEEESS-----SEEEEEEGGGTEEE-EEEECCCCC--------CC
T ss_pred EECCCcch--hheec--CCCCCEEEEEEecCCCEEEEEECC-----CeEEEEeCCCCccc-ceecccccccccCCccccc
Confidence 99876532 22222 233456789999999998876542 45888888764210 00000000000000000
Q ss_pred cccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEEC
Q 003878 358 GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 358 ~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl 437 (789)
........|+|+|+.+++.+ ...+..+++.++.....+. ......+..+.+++++.++++...++ .|.+|++
T Consensus 798 ~~~v~~~~~s~dg~~l~~~~-----~~~v~~~d~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~~dg--~v~vwd~ 869 (1249)
T 3sfz_A 798 EVIVKCCSWSADGDKIIVAA-----KNKVLLFDIHTSGLLAEIH-TGHHSTIQYCDFSPYDHLAVIALSQY--CVELWNI 869 (1249)
T ss_dssp CCCBCCCCBCTTSSEEEEEE-----TTEEEEEETTTCCEEEEEE-CSSSSCCCEEEECSSTTEEEEECSSS--CEEEEET
T ss_pred cceEEEEEECCCCCEEEEEc-----CCcEEEEEecCCCceeEEc-CCCCCceEEEEEcCCCCEEEEEeCCC--eEEEEEc
Confidence 00011124899999888755 3579999998876333332 22235677888988777777777776 6889999
Q ss_pred CCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 438 KNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 438 ~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
.++.....+..+.+.+..+.++++++.++... .-+.+..|++.
T Consensus 870 ~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s----~dg~v~vw~~~ 912 (1249)
T 3sfz_A 870 DSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS----DDQTIRVWETK 912 (1249)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEEHH
T ss_pred CCCceeeecCCCccceEEEEECCCCCEEEEEe----CCCeEEEEEcc
Confidence 98877666666667788899999998766432 23577777754
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=9.9e-08 Score=100.29 Aligned_cols=237 Identities=8% Similarity=-0.052 Sum_probs=147.5
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..+..+.+||||++||-+ +...+|++||+++++.+.. +... .+... ...+.
T Consensus 68 ~~V~~v~~~~~~~~l~sg-----s~Dg~v~iw~~~~~~~~~~-~~~h-------~~~~~------~~~~~---------- 118 (318)
T 4ggc_A 68 EYISSVAWIKEGNYLAVG-----TSSAEVQLWDVQQQKRLRN-MTSH-------SARVG------SLSWN---------- 118 (318)
T ss_dssp CCEEEEEECTTSSEEEEE-----ETTSEEEEEETTTTEEEEE-EECC-------SSCEE------EEEEE----------
T ss_pred CeEEEEEECCCCCEEEEE-----ECCCcEEEeecCCceeEEE-ecCc-------cceEE------EeecC----------
Confidence 457889999999999843 3345899999999976532 1111 00000 00011
Q ss_pred eeeEEEeeeccccceeeeeeec-----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVS-----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYH 280 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~-----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (789)
..+++++..++...+|.... .-......|+++|+.|+....+ ..|.+|
T Consensus 119 --~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-------------------~~i~iw 177 (318)
T 4ggc_A 119 --SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND-------------------NLVNVW 177 (318)
T ss_dssp --TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT-------------------SCEEEE
T ss_pred --CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecC-------------------cceeEE
Confidence 13466666777776665443 1123567889999888765432 247888
Q ss_pred ECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc
Q 003878 281 FLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD 360 (789)
Q Consensus 281 ~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 360 (789)
++.++......+.........+....++|++..++....... ...|.+++..... ..........
T Consensus 178 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~i~lwd~~~~~-------------~~~~~~~~~~ 242 (318)
T 4ggc_A 178 PSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS--DRHIRIWNVCSGA-------------CLSAVDAHSQ 242 (318)
T ss_dssp ESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTT--TCEEEEEETTTCC-------------EEEEEECSSC
T ss_pred ECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCC--CCEEEEEeccccc-------------ccccccceee
Confidence 887654332222222222334567889999888876654333 4568888887632 1111112222
Q ss_pred ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCC
Q 003878 361 AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN 439 (789)
Q Consensus 361 ~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~t 439 (789)
.....++++++.++..+.. .+..|..+|+.+++....+..|. ..+..+++++++.++++...|+ .|++||+.+
T Consensus 243 v~~~~~~~~~~~~~~~sg~--~d~~i~iwd~~~~~~~~~l~gH~--~~V~~l~~spdg~~l~S~s~D~--~v~iWd~~~ 315 (318)
T 4ggc_A 243 VCSILWSPHYKELISGHGF--AQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADE--TLRLWRCFE 315 (318)
T ss_dssp EEEEEEETTTTEEEEEECT--TTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTT--EEEEECCSC
T ss_pred eeeeeecccccceEEEEEc--CCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCC--eEEEEECCC
Confidence 2334588999988876643 34679999998887455555454 5688999998778888899888 688898853
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.01 E-value=9.1e-08 Score=101.77 Aligned_cols=240 Identities=10% Similarity=0.047 Sum_probs=145.3
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+...+..+.+||||++|+-+ +...+|++||+.+++.+. .+... .+
T Consensus 64 h~~~v~~~~~s~dg~~l~s~-----s~D~~v~~wd~~~~~~~~-~~~~h-------~~---------------------- 108 (319)
T 3frx_A 64 HSHIVQDCTLTADGAYALSA-----SWDKTLRLWDVATGETYQ-RFVGH-------KS---------------------- 108 (319)
T ss_dssp CSSCEEEEEECTTSSEEEEE-----ETTSEEEEEETTTTEEEE-EEECC-------SS----------------------
T ss_pred CcccEEEEEECCCCCEEEEE-----eCCCEEEEEECCCCCeeE-EEccC-------CC----------------------
Confidence 33457788999999998843 334589999999997553 12211 00
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED 289 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~ 289 (789)
....++|+||++.|+-...+ ..|.+|++... .
T Consensus 109 --------------------------~v~~~~~~~~~~~l~s~s~D-------------------~~i~vwd~~~~---~ 140 (319)
T 3frx_A 109 --------------------------DVMSVDIDKKASMIISGSRD-------------------KTIKVWTIKGQ---C 140 (319)
T ss_dssp --------------------------CEEEEEECTTSCEEEEEETT-------------------SCEEEEETTSC---E
T ss_pred --------------------------cEEEEEEcCCCCEEEEEeCC-------------------CeEEEEECCCC---e
Confidence 25788999999988765433 24788887532 1
Q ss_pred EEEEecCCCCeeEEEEEEecCC------cEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce-
Q 003878 290 ILCWKDPEHPKYIFSGHVTEDG------QYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ- 362 (789)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~SpDG------~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~- 362 (789)
...+. .+...+..+.++|++ ..++.... ...|.++|+.++. ....+.......
T Consensus 141 ~~~~~--~h~~~v~~~~~~~~~~~~~~~~~l~s~~~-----d~~i~~wd~~~~~-------------~~~~~~~h~~~v~ 200 (319)
T 3frx_A 141 LATLL--GHNDWVSQVRVVPNEKADDDSVTIISAGN-----DKMVKAWNLNQFQ-------------IEADFIGHNSNIN 200 (319)
T ss_dssp EEEEC--CCSSCEEEEEECCC------CCEEEEEET-----TSCEEEEETTTTE-------------EEEEECCCCSCEE
T ss_pred EEEEe--ccCCcEEEEEEccCCCCCCCccEEEEEeC-----CCEEEEEECCcch-------------hheeecCCCCcEE
Confidence 22222 233445678888854 35554332 2448888987631 111222211112
Q ss_pred eEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce
Q 003878 363 YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 363 ~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
...|+|+|+.|+..+ .++.|..+|+.+++....+ ... ..+..+++++++.+++....+ .+.+|+++++..
T Consensus 201 ~~~~sp~g~~l~s~~----~dg~i~iwd~~~~~~~~~~-~~~--~~v~~~~~sp~~~~la~~~~~---~i~v~~~~~~~~ 270 (319)
T 3frx_A 201 TLTASPDGTLIASAG----KDGEIMLWNLAAKKAMYTL-SAQ--DEVFSLAFSPNRYWLAAATAT---GIKVFSLDPQYL 270 (319)
T ss_dssp EEEECTTSSEEEEEE----TTCEEEEEETTTTEEEEEE-ECC--SCEEEEEECSSSSEEEEEETT---EEEEEEETTEEE
T ss_pred EEEEcCCCCEEEEEe----CCCeEEEEECCCCcEEEEe-cCC--CcEEEEEEcCCCCEEEEEcCC---CcEEEEeCcCee
Confidence 234899999877543 3468999999887533333 222 357789999876676666655 377788775443
Q ss_pred eeeccc--------CCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 443 LHQLPI--------EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 443 ~~~l~~--------~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
...+.. ....+..++++||++.++... .-+.++.||+.++
T Consensus 271 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~----~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 271 VDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGY----TDNVIRVWQVMTA 318 (319)
T ss_dssp EEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEE----TTSCEEEEEEEEC
T ss_pred eeccCccccccccCcCcceeEEEECCCCCEEEEee----cCceEEEEEEeec
Confidence 333321 123466788999999776432 2356788877553
|
| >3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-08 Score=107.84 Aligned_cols=117 Identities=12% Similarity=0.059 Sum_probs=76.5
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCC
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 595 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~ 595 (789)
.+| .+|.+... +..|.||++||.++.... |.. ....|. .||.|+++|.||.|..... .......
T Consensus 12 ~~~-~~~~~~~~--------g~g~~~vllHG~~~~~~~--w~~-~~~~l~-~~~~vi~~Dl~G~G~s~~~---~~~~~~~ 75 (291)
T 3qyj_A 12 TTE-ARINLVKA--------GHGAPLLLLHGYPQTHVM--WHK-IAPLLA-NNFTVVATDLRGYGDSSRP---ASVPHHI 75 (291)
T ss_dssp CSS-CEEEEEEE--------CCSSEEEEECCTTCCGGG--GTT-THHHHT-TTSEEEEECCTTSTTSCCC---CCCGGGG
T ss_pred cCC-eEEEEEEc--------CCCCeEEEECCCCCCHHH--HHH-HHHHHh-CCCEEEEEcCCCCCCCCCC---CCCcccc
Confidence 467 77776432 344679999998765443 332 245666 7999999999997754321 0000001
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecC
Q 003878 596 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV 650 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~ 650 (789)
..+.+++.+.+..+++.- ..+++.++|||+||.++..++.++|++++++|+..
T Consensus 76 ~~~~~~~~~~~~~~~~~l--~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~ 128 (291)
T 3qyj_A 76 NYSKRVMAQDQVEVMSKL--GYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLD 128 (291)
T ss_dssp GGSHHHHHHHHHHHHHHT--TCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEES
T ss_pred ccCHHHHHHHHHHHHHHc--CCCCEEEEEEChHHHHHHHHHHhCchhccEEEEEC
Confidence 123444444333334331 23579999999999999999999999999998764
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.4e-07 Score=96.17 Aligned_cols=295 Identities=13% Similarity=0.019 Sum_probs=167.2
Q ss_pred CCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeee
Q 003878 115 AKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTI 194 (789)
Q Consensus 115 ~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (789)
.+.+ +||...+..+-+ +.-++|||++ .||.+.+ .+|+|||++||+.+.. +... .+.+ ...
T Consensus 12 ~p~r-vldap~~~~d~y--~~~l~WS~~~-~lAvg~D------~tV~iWd~~tg~~~~~-~~~~-----~~~~----~V~ 71 (318)
T 4ggc_A 12 LPDR-ILDAPEIRNDYY--LNLVDWSSGN-VLAVALD------NSVYLWSASSGDILQL-LQME-----QPGE----YIS 71 (318)
T ss_dssp SCSE-EEECTTCCCCTT--CBCEEECTTS-EEEEEET------TEEEEEETTTCCEEEE-EECC-----STTC----CEE
T ss_pred CCCE-EeeCCCCccccc--ceEEEECCCC-EEEEEeC------CEEEEEECCCCCEEEE-EEec-----CCCC----eEE
Confidence 3344 457655544322 3457899997 7876542 2799999999976541 1110 0111 112
Q ss_pred ccccccccccccccccceeeEEEeeeccccceeeeeeec--------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCC
Q 003878 195 SLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVS--------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAG 266 (789)
Q Consensus 195 ~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~--------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~ 266 (789)
+..+.|++ ++++++..+|+..||.+.. ........++++++.++....
T Consensus 72 ~v~~~~~~------------~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~------------ 127 (318)
T 4ggc_A 72 SVAWIKEG------------NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSR------------ 127 (318)
T ss_dssp EEEECTTS------------SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEET------------
T ss_pred EEEECCCC------------CEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEec------------
Confidence 23344665 4677888999999998754 111234566777776654432
Q ss_pred ccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCccccccc
Q 003878 267 TETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKR 346 (789)
Q Consensus 267 ~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~ 346 (789)
...+..+...+... .+..... +........++++|++|+....+ ..|.++|+.++...
T Consensus 128 -------~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~~~------- 185 (318)
T 4ggc_A 128 -------SGHIHHHDVRVAEH-HVATLSG--HSQEVCGLRWAPDGRHLASGGND-----NLVNVWPSAPGEGG------- 185 (318)
T ss_dssp -------TSEEEEEETTSSSC-EEEEEEC--CSSCEEEEEECTTSSEEEEEETT-----SCEEEEESSCBTTB-------
T ss_pred -------CCceEeeecCCCce-eEEEEcC--ccCceEEEEEcCCCCEEEEEecC-----cceeEEECCCCccc-------
Confidence 22355555544322 2222332 23335578899999998765533 34888898875311
Q ss_pred CCCCccEeeeccccc-eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEE
Q 003878 347 DGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 425 (789)
Q Consensus 347 ~~~~~~~~l~~~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~ 425 (789)
............. ....+++++..++..... .....|..++..... ........ ..+..+.+.+++..++...
T Consensus 186 --~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~i~lwd~~~~~-~~~~~~~~--~~v~~~~~~~~~~~~~~~s 259 (318)
T 4ggc_A 186 --WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG-TSDRHIRIWNVCSGA-CLSAVDAH--SQVCSILWSPHYKELISGH 259 (318)
T ss_dssp --SCCSEEECCCCSCEEEEEECTTSTTEEEEEEC-TTTCEEEEEETTTCC-EEEEEECS--SCEEEEEEETTTTEEEEEE
T ss_pred --ccceeeecccCCceEEEEecCCCCcEEEEEec-CCCCEEEEEeccccc-ccccccce--eeeeeeeecccccceEEEE
Confidence 0111111111111 123367766655544332 235678888887765 22222222 3355666666444333333
Q ss_pred eCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCC
Q 003878 426 SDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 485 (789)
Q Consensus 426 ~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~t 485 (789)
......|++||+.+++.+..+..+.+.|..++++|+++.|+ +.+ .-.++..||+.+
T Consensus 260 g~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~-S~s---~D~~v~iWd~~~ 315 (318)
T 4ggc_A 260 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA-SAA---ADETLRLWRCFE 315 (318)
T ss_dssp CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE-EEE---TTTEEEEECCSC
T ss_pred EcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE-EEe---cCCeEEEEECCC
Confidence 22223799999998988778877777888999999998655 332 235788888754
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.99 E-value=7.2e-08 Score=103.89 Aligned_cols=247 Identities=13% Similarity=0.015 Sum_probs=150.5
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCc--eecccccccccccccCccceeeeeeccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI--VEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLY 207 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 207 (789)
+...+..+++||||++||.+.. ...|++||+.++. .+. .+... .+
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~-~~~~h-------~~-------------------- 56 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATCSS-----DKTIKIFEVEGETHKLID-TLTGH-------EG-------------------- 56 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEEET-----TSCEEEEEEETTEEEEEE-EECCC-------SS--------------------
T ss_pred CcccEEEEEEcCCCCEEEEEEC-----CCcEEEEecCCCcceeee-EecCC-------CC--------------------
Confidence 3345788999999999986543 2369999998442 221 11111 00
Q ss_pred cccceeeEEEeeeccccceeeeeeecccccceEEEEeC--CcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCC
Q 003878 208 LRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHD--SKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTK 285 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspD--g~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~ 285 (789)
....++|+|+ ++.|+....+ ..|++|++.+.
T Consensus 57 ----------------------------~v~~~~~~~~~~~~~l~s~~~d-------------------g~v~iwd~~~~ 89 (379)
T 3jrp_A 57 ----------------------------PVWRVDWAHPKFGTILASCSYD-------------------GKVLIWKEENG 89 (379)
T ss_dssp ----------------------------CEEEEEECCGGGCSEEEEEETT-------------------SCEEEEEEETT
T ss_pred ----------------------------cEEEEEeCCCCCCCEEEEeccC-------------------CEEEEEEcCCC
Confidence 2478999988 8888765432 24788887664
Q ss_pred CCCcEEEEecCCCCeeEEEEEEecC--CcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-e
Q 003878 286 QSEDILCWKDPEHPKYIFSGHVTED--GQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-Q 362 (789)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~SpD--G~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~ 362 (789)
.......+. .+...+..+.|+|+ |++|+.... ...|.++|+.++. ......+...... .
T Consensus 90 ~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~-----d~~i~v~d~~~~~-----------~~~~~~~~~~~~~v~ 151 (379)
T 3jrp_A 90 RWSQIAVHA--VHSASVNSVQWAPHEYGPLLLVASS-----DGKVSVVEFKENG-----------TTSPIIIDAHAIGVN 151 (379)
T ss_dssp EEEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEET-----TSEEEEEECCTTS-----------CCCEEEEECCTTCEE
T ss_pred ceeEeeeec--CCCcceEEEEeCCCCCCCEEEEecC-----CCcEEEEecCCCC-----------ceeeEEecCCCCceE
Confidence 322222232 23445678999999 898887653 3458899988742 1111122121111 1
Q ss_pred eEEEec-------------CCCEEEEEECCCCCCceEEEEECCCCCC-e---EEeccCCCCceeeeEEEecC---CEEEE
Q 003878 363 YEVIAN-------------DDTVFTFLTNKDAPKYKIIRVDLKEPND-W---FEVIPEAERDVLESATAVNL---NQMIV 422 (789)
Q Consensus 363 ~~~~s~-------------dG~~l~~~tn~~~~~~~L~~~dl~~~~~-~---~~l~~~~~~~~i~~v~~~~~---~~lv~ 422 (789)
...|+| +++.|+..+.. +.|..+|+.++.. + ..+..+ ...+..+.++++ +.+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~l~ 225 (379)
T 3jrp_A 152 SASWAPATIEEDGEHNGTKESRKFVTGGAD----NLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYLA 225 (379)
T ss_dssp EEEECCCC----------CTTCEEEEEETT----SCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEE
T ss_pred EEEEcCccccccccccCCCCCCEEEEEeCC----CeEEEEEecCCCcceeeEEEEecc--cCcEeEEEECCCCCCCCeEE
Confidence 234777 67777765433 4678888765541 1 122222 256788999997 68888
Q ss_pred EEEeCCeEEEEEEECCCCc---eeeeccc--CCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 423 SYLSDVKYVLQIRDLKNGS---LLHQLPI--EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 423 ~~~~~g~~~L~~~dl~tG~---~~~~l~~--~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
+...++ .|.+|++.+++ ....+.. ....+..+.++++++.++.... -+.++.|++.++
T Consensus 226 s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----dg~i~iw~~~~~ 288 (379)
T 3jrp_A 226 SVSQDR--TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG----DNKVTLWKENLE 288 (379)
T ss_dssp EEETTS--CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES----SSSEEEEEEEET
T ss_pred EEeCCC--EEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC----CCcEEEEeCCCC
Confidence 888887 68888887663 1122222 3556778899999987665432 356777777644
|
| >1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ... | Back alignment and structure |
|---|
Probab=98.98 E-value=2.6e-10 Score=130.41 Aligned_cols=222 Identities=18% Similarity=0.176 Sum_probs=131.4
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC---CCCCHHHHHHHHcCCeEEEEEeecCCC-CCChhHHhcc
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT---PSFSVSRTILMRHLGAVFCIANIRGGG-EYGEEWHKGG 590 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~---~~~~~~~~~~l~~~G~~v~~~~~RG~g-~~g~~~~~~~ 590 (789)
+.|. ..+ -++.|+.. .++.|+||++|||...... ..+.. ..++.+.|++|+.+|||.+. +|...- ..
T Consensus 91 sedc-l~l--nv~~P~~~--~~~~Pv~v~iHGG~~~~g~~~~~~~~~--~~la~~~~~vvv~~nYRlg~~Gf~~~~--~~ 161 (537)
T 1ea5_A 91 SEDC-LYL--NIWVPSPR--PKSTTVMVWIYGGGFYSGSSTLDVYNG--KYLAYTEEVVLVSLSYRVGAFGFLALH--GS 161 (537)
T ss_dssp CSCC-CEE--EEEECSSC--CSSEEEEEEECCSTTTCCCTTCGGGCT--HHHHHHHTCEEEECCCCCHHHHHCCCT--TC
T ss_pred CCcC-CeE--EEeccCCC--CCCCeEEEEECCCcccCCCCCCCccCh--HHHHhcCCEEEEEeccCccccccccCC--CC
Confidence 5677 444 55678753 3678999999998543332 22443 34554589999999999541 111000 00
Q ss_pred cccCCcchHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHh--CCCceeEEEecCCccccccccc-cc--
Q 003878 591 ALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVMDMLRYHK-FT-- 662 (789)
Q Consensus 591 ~~~~~~~~~~D~~~~~~~L~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~--~pd~f~a~v~~~p~~d~~~~~~-~~-- 662 (789)
....+...+.|.+++++|+.++- -.||+||.|+|+|+||.+++.++.. .+.+|+++|+++|......... ..
T Consensus 162 ~~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vtl~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~~~~~~~~~~~~ 241 (537)
T 1ea5_A 162 QEAPGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPNCPWASVSVAEG 241 (537)
T ss_dssp SSSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCTTCTTSCBCHHHH
T ss_pred CCCcCccccHHHHHHHHHHHHHHHHhCCCccceEEEecccHHHHHHHHHhCccchhhhhhheeccCCccCCccccCHHHH
Confidence 11223345899999999998762 3699999999999999999888765 2468999999999654221110 00
Q ss_pred --CCccchhhcCCCC--cHHHHHHHHhcCcccCCCCCC---CCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHh
Q 003878 663 --IGHAWVSDFGCSE--EEEEFYWLIKYSPLHNVRRPW---EQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYV 735 (789)
Q Consensus 663 --~~~~~~~e~g~p~--~~~~~~~l~~~sP~~~v~~~~---~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~ 735 (789)
.........|++. ..+..+.|++.++-..+.... ...........|+ -|..+-+.++.++.+.-+..
T Consensus 242 ~~~~~~~a~~lgc~~~~~~~~~~cLr~~~~~~l~~a~~~~~~~~~~~~~~f~Pv------vDg~~lp~~p~~~~~~g~~~ 315 (537)
T 1ea5_A 242 RRRAVELGRNLNCNLNSDEELIHCLREKKPQELIDVEWNVLPFDSIFRFSFVPV------IDGEFFPTSLESMLNSGNFK 315 (537)
T ss_dssp HHHHHHHHHHTTCCCSSHHHHHHHHHHSCHHHHHHHGGGGCSSSCSSCCSSCCB------CCSSSSSSCHHHHHHHTCSC
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHhhCCHHHHHHHHhhhccccccccccceee------ECcccCCcCHHHHHhcCCCC
Confidence 0011223456652 334567777765432211100 0000000113344 35556666666665443322
Q ss_pred hccCCCCCCCCCcEEEEEeCCCCcCC
Q 003878 736 LCTSLENSPQTNPIIGRIERKAGHGV 761 (789)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~~~~~gH~~ 761 (789)
++|+.+-...++|+.+
T Consensus 316 ----------~vp~liG~~~~Eg~~f 331 (537)
T 1ea5_A 316 ----------KTQILLGVNKDEGSFF 331 (537)
T ss_dssp ----------CSCEEEEEETBTTHHH
T ss_pred ----------CCCEEEeeecchhHHH
Confidence 7899999999999753
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-08 Score=110.55 Aligned_cols=254 Identities=12% Similarity=0.080 Sum_probs=149.3
Q ss_pred CcEEEEeEEeCC-CCcEEEEEEecCCceEEEEEEEEcCCCceecc---cccccccccccCccceeeeeeccccccccccc
Q 003878 130 GTAALIKVSVSE-DAKYLAYALSYSGSDWATIKLMRIEDQIVEAD---ALSWVCFCFSHSFGYFFHLTISLLNVPTYKLF 205 (789)
Q Consensus 130 ~~~~~~~~~~Sp-Dg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 205 (789)
+...+..++||| |+++||.+. ...+|++||+.++..... .+... ..|.+
T Consensus 80 h~~~V~~~~~~p~~~~~l~s~s-----~dg~v~vw~~~~~~~~~~~~~~~~~~----~~h~~------------------ 132 (402)
T 2aq5_A 80 HTAPVLDIAWCPHNDNVIASGS-----EDCTVMVWEIPDGGLVLPLREPVITL----EGHTK------------------ 132 (402)
T ss_dssp CSSCEEEEEECTTCTTEEEEEE-----TTSEEEEEECCTTCCSSCBCSCSEEE----ECCSS------------------
T ss_pred CCCCEEEEEeCCCCCCEEEEEe-----CCCeEEEEEccCCCCccccCCceEEe----cCCCC------------------
Confidence 445688999999 899888543 234799999998843210 00000 00000
Q ss_pred cccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCC
Q 003878 206 LYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTK 285 (789)
Q Consensus 206 ~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~ 285 (789)
....++|+|||+.++++.. ....|++|++.++
T Consensus 133 ------------------------------~v~~~~~~p~~~~~l~s~~------------------~dg~i~iwd~~~~ 164 (402)
T 2aq5_A 133 ------------------------------RVGIVAWHPTAQNVLLSAG------------------CDNVILVWDVGTG 164 (402)
T ss_dssp ------------------------------CEEEEEECSSBTTEEEEEE------------------TTSCEEEEETTTT
T ss_pred ------------------------------eEEEEEECcCCCCEEEEEc------------------CCCEEEEEECCCC
Confidence 2578999999954444432 1234889998764
Q ss_pred CCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEee-ecccc--ce
Q 003878 286 QSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL-IDGFD--AQ 362 (789)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l-~~~~~--~~ 362 (789)
. .+..+....+...+..+.|+|||++|+.... ...|+++|+.++. ....+ ..... ..
T Consensus 165 ~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~-------------~~~~~~~~~~~~~~~ 224 (402)
T 2aq5_A 165 A--AVLTLGPDVHPDTIYSVDWSRDGALICTSCR-----DKRVRVIEPRKGT-------------VVAEKDRPHEGTRPV 224 (402)
T ss_dssp E--EEEEECTTTCCSCEEEEEECTTSSCEEEEET-----TSEEEEEETTTTE-------------EEEEEECSSCSSSCC
T ss_pred C--ccEEEecCCCCCceEEEEECCCCCEEEEEec-----CCcEEEEeCCCCc-------------eeeeeccCCCCCcce
Confidence 2 2223311233445678999999999987653 3569999998742 12222 11111 12
Q ss_pred eEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCE-EEEEEEeCCeEEEEEEECCCCc
Q 003878 363 YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGS 441 (789)
Q Consensus 363 ~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl~tG~ 441 (789)
...|+++|+.|+...+. ..+..|..+|+.+++....+........+..+.+++++. +++....++ .|++|++.+++
T Consensus 225 ~~~~~~~~~~l~~g~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg--~i~i~d~~~~~ 301 (402)
T 2aq5_A 225 HAVFVSEGKILTTGFSR-MSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS--SIRYFEITSEA 301 (402)
T ss_dssp EEEECSTTEEEEEEECT-TCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCS--CEEEEEECSST
T ss_pred EEEEcCCCcEEEEeccC-CCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCC--eEEEEEecCCC
Confidence 34589988766543322 346789999998765211122211124467788888544 445554565 68889988776
Q ss_pred e-eeeccc--CCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 442 L-LHQLPI--EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 442 ~-~~~l~~--~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
. ...+.. ....+..+.++|++..++ + .-..+..|++.+++
T Consensus 302 ~~~~~l~~~~~~~~v~~~~~sp~~~~~~---s---~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 302 PFLHYLSMFSSKESQRGMGYMPKRGLEV---N---KCEIARFYKLHERK 344 (402)
T ss_dssp TCEEEEEEECCSSCCSEEEECCGGGSCG---G---GTEEEEEEEEETTE
T ss_pred cceEeecccccCCcccceEEecccccce---e---cceeEEEEEcCCCc
Confidence 3 233322 134566778888876432 1 22367777777764
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.97 E-value=9.5e-09 Score=112.80 Aligned_cols=242 Identities=12% Similarity=0.022 Sum_probs=142.6
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCC---Cc-eecccccccccccccCccceeeeeeccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED---QI-VEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLY 207 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~t---g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 207 (789)
..+..++|||||++||.+.. ...|++||+.+ +. .+. .+... .+.. .+..+.|++.
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~-----dg~v~vw~~~~~~~~~~~~~-~~~~h-------~~~v----~~~~~~~~~~---- 126 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALD-----NGSLELYSTNEANNAINSMA-RFSNH-------SSSV----KTVKFNAKQD---- 126 (416)
T ss_dssp SCEEEEEECSSSSCEEEEES-----SSCEEEECCSSTTSCCCEEE-ECCCS-------SSCC----CEEEECSSST----
T ss_pred CceEEEEECCCCCeEEEEcc-----CCeEEEeecccccccccchh-hccCC-------ccce----EEEEEcCCCC----
Confidence 45788999999999986543 33699999988 21 221 11111 1101 1112234411
Q ss_pred cccceeeEEEeeeccccceeeeeeecc-------------------cccceEEEEeCCcEEEEEEccCCCCCCCCCCCcc
Q 003878 208 LRGIFFFFYLFSLVKSTIYSFWSVVSQ-------------------FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTE 268 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g~~~l~~~~~~-------------------~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~ 268 (789)
.+++++..+|...+|.+... -....++|+||+..++++..
T Consensus 127 -------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------------- 185 (416)
T 2pm9_A 127 -------NVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG-------------- 185 (416)
T ss_dssp -------TBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEES--------------
T ss_pred -------CEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEc--------------
Confidence 46788888999999976541 12357899999544444422
Q ss_pred ccCCcccEEEEEECCCCCCCcEEEEecCC----CCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCccccc
Q 003878 269 TDSNLYHEFYYHFLGTKQSEDILCWKDPE----HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFK 344 (789)
Q Consensus 269 ~~~~~~~~i~~~~lg~~~~~~~~~~~~~~----~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~ 344 (789)
....|++|++.+.. .+..+.... +...+..+.|+|+|..+++...... ....|+++|+.++.
T Consensus 186 ----~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~~~~i~~~d~~~~~------- 251 (416)
T 2pm9_A 186 ----SSNFASIWDLKAKK--EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD-NDPSILIWDLRNAN------- 251 (416)
T ss_dssp ----SSSCEEEEETTTTE--EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS-SSCCCCEEETTSTT-------
T ss_pred ----CCCCEEEEECCCCC--cceEEeccccccccCCceEEEEECCCCCCEEEEEECCC-CCceEEEEeCCCCC-------
Confidence 22348888887643 222233221 0234678999999864444443221 11258889998742
Q ss_pred ccCCCCccEeee-ccccc-eeEEEec-CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCC-EE
Q 003878 345 KRDGLLPFVKLI-DGFDA-QYEVIAN-DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QM 420 (789)
Q Consensus 345 ~~~~~~~~~~l~-~~~~~-~~~~~s~-dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~-~l 420 (789)
.+...+. ..... ....|+| +++.|+..+. ++.|..+|+.+++....+..+. ..+..+.+++++ .+
T Consensus 252 -----~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~----dg~v~~wd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~ 320 (416)
T 2pm9_A 252 -----TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR----DNTVLLWNPESAEQLSQFPARG--NWCFKTKFAPEAPDL 320 (416)
T ss_dssp -----SCSBCCCSCCSSCEEEEEECSSCSSCEEEEES----SSEEEEECSSSCCEEEEEECSS--SCCCCEEECTTCTTE
T ss_pred -----CCcEEeecCccCceeEEEeCCCCCCeEEEEeC----CCCEEEeeCCCCccceeecCCC--CceEEEEECCCCCCE
Confidence 1111121 11111 2234888 7777665443 4679999998876334443333 457789999865 68
Q ss_pred EEEEEeCCeEEEEEEECCCCce
Q 003878 421 IVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 421 v~~~~~~g~~~L~~~dl~tG~~ 442 (789)
+++...++ .|.+|++.+++.
T Consensus 321 l~s~~~d~--~i~iw~~~~~~~ 340 (416)
T 2pm9_A 321 FACASFDN--KIEVQTLQNLTN 340 (416)
T ss_dssp EEECCSSS--EEEEEESCCCCC
T ss_pred EEEEecCC--cEEEEEccCCCC
Confidence 88887776 788999876553
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=8.2e-08 Score=104.24 Aligned_cols=165 Identities=15% Similarity=0.059 Sum_probs=87.7
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECC-CCCCCcccccccCCCCccEeee--c-cccceeEEEecCCCEEEEEE
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLS-ALPEGLEGFKKRDGLLPFVKLI--D-GFDAQYEVIANDDTVFTFLT 377 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~-~g~~~~~~~~~~~~~~~~~~l~--~-~~~~~~~~~s~dG~~l~~~t 377 (789)
...+.|||||++|++.. .+ ...|++++++ ++. ......+. . +.......|+|||+.+|+..
T Consensus 147 ~~~~~~spdG~~l~~~~-~~---~~~v~~~~~~~~g~-----------~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~ 211 (365)
T 1jof_A 147 IHGMVFDPTETYLYSAD-LT---ANKLWTHRKLASGE-----------VELVGSVDAPDPGDHPRWVAMHPTGNYLYALM 211 (365)
T ss_dssp EEEEEECTTSSEEEEEE-TT---TTEEEEEEECTTSC-----------EEEEEEEECSSTTCCEEEEEECTTSSEEEEEE
T ss_pred ceEEEECCCCCEEEEEc-CC---CCEEEEEEECCCCC-----------EEEeeeEecCCCCCCCCEeEECCCCCEEEEEE
Confidence 45789999999986543 22 3568999887 542 00011111 1 22223345899999998765
Q ss_pred CCCCCCceEEEEECCCCCCeE----E--eccCCC-C-c-------eeeeEE-EecCCE-EEEEEEeCC---eEEEEEEEC
Q 003878 378 NKDAPKYKIIRVDLKEPNDWF----E--VIPEAE-R-D-------VLESAT-AVNLNQ-MIVSYLSDV---KYVLQIRDL 437 (789)
Q Consensus 378 n~~~~~~~L~~~dl~~~~~~~----~--l~~~~~-~-~-------~i~~v~-~~~~~~-lv~~~~~~g---~~~L~~~dl 437 (789)
..+ ....++.++.++++ .. . .++... . . ...++. ++++++ |++..+.+. ...|.+|++
T Consensus 212 ~~~-~~v~v~~~~~~~g~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~ 289 (365)
T 1jof_A 212 EAG-NRICEYVIDPATHM-PVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKL 289 (365)
T ss_dssp TTT-TEEEEEEECTTTCC-EEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEE
T ss_pred CCC-CeEEEEEEeCCCCc-EEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEE
Confidence 432 23344445554554 21 1 223220 1 1 467788 888654 554443332 126788887
Q ss_pred C-CCceeee---cccCCeeEEEeeccc---CCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 438 K-NGSLLHQ---LPIEIGSVNAISARR---EDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 438 ~-tG~~~~~---l~~~~~~v~~~s~s~---d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
+ +|+.... +.........++++| |++.+++... .-.++..|+.+.+
T Consensus 290 ~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~---~~~~v~v~~~~~~ 342 (365)
T 1jof_A 290 RDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD---QEGWLEIYRWKDE 342 (365)
T ss_dssp CTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS---SSCEEEEEEEETT
T ss_pred CCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEc---CCCeEEEEEEchh
Confidence 5 5664221 211111223456678 7888776532 1256666666544
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.97 E-value=6.1e-08 Score=106.63 Aligned_cols=250 Identities=8% Similarity=-0.008 Sum_probs=148.4
Q ss_pred EeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceee
Q 003878 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFF 214 (789)
Q Consensus 135 ~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 214 (789)
....++|||++||.+.. ...|++||+.+++.... +... .+
T Consensus 101 ~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~-~~~h-------~~--------------------------- 140 (420)
T 3vl1_A 101 AVDTAKLQMRRFILGTT-----EGDIKVLDSNFNLQREI-DQAH-------VS--------------------------- 140 (420)
T ss_dssp EEEEECSSSCEEEEEET-----TSCEEEECTTSCEEEEE-TTSS-------SS---------------------------
T ss_pred EEEEEecCCCEEEEEEC-----CCCEEEEeCCCcceeee-cccc-------cC---------------------------
Confidence 34468999999986543 23699999998865431 1111 00
Q ss_pred EEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEe
Q 003878 215 FYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK 294 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~ 294 (789)
....++|+||++.|+....+ ..|++|++.+.... ..+.
T Consensus 141 ---------------------~v~~~~~~~~~~~l~s~s~d-------------------~~i~iwd~~~~~~~--~~~~ 178 (420)
T 3vl1_A 141 ---------------------EITKLKFFPSGEALISSSQD-------------------MQLKIWSVKDGSNP--RTLI 178 (420)
T ss_dssp ---------------------CEEEEEECTTSSEEEEEETT-------------------SEEEEEETTTCCCC--EEEE
T ss_pred ---------------------ccEEEEECCCCCEEEEEeCC-------------------CeEEEEeCCCCcCc--eEEc
Confidence 25789999999988765432 36899999765432 2333
Q ss_pred cCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccc-cCCCCccEeee--c----------cccc
Q 003878 295 DPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK-RDGLLPFVKLI--D----------GFDA 361 (789)
Q Consensus 295 ~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~l~--~----------~~~~ 361 (789)
. +...+..+.|+|||++|+....+ ..|.++|+.++... ..+.. .........+. . ....
T Consensus 179 ~--h~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v 250 (420)
T 3vl1_A 179 G--HRATVTDIAIIDRGRNVLSASLD-----GTIRLWECGTGTTI-HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKK 250 (420)
T ss_dssp C--CSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTTEEE-EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCC
T ss_pred C--CCCcEEEEEEcCCCCEEEEEcCC-----CcEEEeECCCCcee-EEeecCCCCCCCccEEEEecCCcceeeecccCcc
Confidence 3 23446789999999999866533 34888898764210 00000 00000000000 0 0000
Q ss_pred eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCE-EEEEEEeCCeEEEEEEECCCC
Q 003878 362 QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNG 440 (789)
Q Consensus 362 ~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl~tG 440 (789)
....|+|+|+.|+..+. ++.|..+|+.+++....+ .......+..+.+++++. ++++...++ .|++||+.++
T Consensus 251 ~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~g~~dg--~i~vwd~~~~ 323 (420)
T 3vl1_A 251 NNLEFGTYGKYVIAGHV----SGVITVHNVFSKEQTIQL-PSKFTCSCNSLTVDGNNANYIYAGYENG--MLAQWDLRSP 323 (420)
T ss_dssp CTTCSSCTTEEEEEEET----TSCEEEEETTTCCEEEEE-CCTTSSCEEEEEECSSCTTEEEEEETTS--EEEEEETTCT
T ss_pred cceEEcCCCCEEEEEcC----CCeEEEEECCCCceeEEc-ccccCCCceeEEEeCCCCCEEEEEeCCC--eEEEEEcCCC
Confidence 01126788887765443 356999999887633333 222235688899998655 788888887 7999999877
Q ss_pred ce-eeeccc-CCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 441 SL-LHQLPI-EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 441 ~~-~~~l~~-~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
+. ...+.. ....+..+.+ ++++ ++++. ..-+.+..|++.+.
T Consensus 324 ~~~~~~~~~~~~~~v~~~~~-~~~~-~l~s~---~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 324 ECPVGEFLINEGTPINNVYF-AAGA-LFVSS---GFDTSIKLDIISDP 366 (420)
T ss_dssp TSCSEEEEESTTSCEEEEEE-ETTE-EEEEE---TTTEEEEEEEECCT
T ss_pred cCchhhhhccCCCCceEEEe-CCCC-EEEEe---cCCccEEEEeccCC
Confidence 53 344443 2444555533 4555 33333 23468888887664
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-07 Score=100.71 Aligned_cols=168 Identities=11% Similarity=-0.053 Sum_probs=93.1
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC-CcEE--EEecCCCCeeEEEEEEecCCcE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS-EDIL--CWKDPEHPKYIFSGHVTEDGQY 313 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~-~~~~--~~~~~~~~~~~~~~~~SpDG~~ 313 (789)
...++|+|||+.|++... ....|+++++.+... .... ....+. ......+.|+|||++
T Consensus 131 ~~~~~~s~dg~~l~~~~~------------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pdg~~ 191 (343)
T 1ri6_A 131 CHSANISPDNRTLWVPAL------------------KQDRICLFTVSDDGHLVAQDPAEVTTVE-GAGPRHMVFHPNEQY 191 (343)
T ss_dssp BCCCEECTTSSEEEEEEG------------------GGTEEEEEEECTTSCEEEEEEEEEECST-TCCEEEEEECTTSSE
T ss_pred ceEEEECCCCCEEEEecC------------------CCCEEEEEEecCCCceeeecccccccCC-CCCcceEEECCCCCE
Confidence 367899999999987642 223588888865221 1111 222221 123456899999999
Q ss_pred EEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee---ccc----cceeEEEecCCCEEEEEECCCCCCceE
Q 003878 314 LVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI---DGF----DAQYEVIANDDTVFTFLTNKDAPKYKI 386 (789)
Q Consensus 314 l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~---~~~----~~~~~~~s~dG~~l~~~tn~~~~~~~L 386 (789)
|++.... ...+.++++...... ........ .+. ......|+|||+.||+.... +..|
T Consensus 192 l~~~~~~----~~~i~~~~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~---~~~i 255 (343)
T 1ri6_A 192 AYCVNEL----NSSVDVWELKDPHGN---------IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT---ASLI 255 (343)
T ss_dssp EEEEETT----TTEEEEEESSCTTSC---------CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT---TTEE
T ss_pred EEEEeCC----CCEEEEEEecCCCCc---------EEEEeeccccCccccccCCccceEECCCCCEEEEEecC---CCEE
Confidence 8876522 356888888531100 00011111 110 01124589999988765532 3578
Q ss_pred EEEECC--CCCCeEEe--ccCCCCceeeeEEEecCCE-EEEEEEeCCeEEEEEEECCCCce
Q 003878 387 IRVDLK--EPNDWFEV--IPEAERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 387 ~~~dl~--~~~~~~~l--~~~~~~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
.+++++ ++. .+.+ ++.. ..+..+++++++. +++....++.-.++.+|.++|+.
T Consensus 256 ~v~d~~~~~~~-~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 256 TVFSVSEDGSV-LSKEGFQPTE--TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp EEEEECTTSCC-EEEEEEEECS--SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred EEEEEcCCCCc-eEEeeeecCC--CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 888876 333 2222 2222 2266788988655 55444355544555557776654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.4e-07 Score=111.73 Aligned_cols=280 Identities=10% Similarity=0.083 Sum_probs=161.7
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
|+-.|..++++|++..++.+.+. ..+|++||+.++.......... +..|.+. ..+..+.|++
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~----D~~i~~W~~~~~~~~~~~~~~~---~~~h~~~----v~~v~~s~~g------- 442 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASR----DKSIILWKLTKDDKAYGVAQRR---LTGHSHF----VEDVVLSSDG------- 442 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEET----TSEEEEEECCCSTTCSCEEEEE---EECCSSC----EEEEEECTTS-------
T ss_pred CCceeEEEEecCCCCCEEEEEeC----CCcEEEEEccCCCcccccccce---ecCCCCc----EEEEEECCCC-------
Confidence 44567889999987544444333 3489999998753211000000 0111111 1122334566
Q ss_pred cceeeEEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEE
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYY 279 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (789)
++++++..+|+..||.+.. .-...+++|+|||+.|+-...+ ..|.+
T Consensus 443 -----~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D-------------------~~i~i 498 (694)
T 3dm0_A 443 -----QFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRD-------------------RTIKL 498 (694)
T ss_dssp -----SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETT-------------------SCEEE
T ss_pred -----CEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCC-------------------CEEEE
Confidence 4778889999999998754 1124678999999998866433 24777
Q ss_pred EECCCCCCCcEEEEe-cCCCCeeEEEEEEecCCcE-EEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec
Q 003878 280 HFLGTKQSEDILCWK-DPEHPKYIFSGHVTEDGQY-LVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID 357 (789)
Q Consensus 280 ~~lg~~~~~~~~~~~-~~~~~~~~~~~~~SpDG~~-l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~ 357 (789)
|++.... ...+.. ...+...+..+.|+|++.. ++++... ...|.++|+.++. ....+..
T Consensus 499 wd~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----d~~v~vwd~~~~~-------------~~~~~~~ 559 (694)
T 3dm0_A 499 WNTLGEC--KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW----DKTVKVWNLSNCK-------------LRSTLAG 559 (694)
T ss_dssp ECTTSCE--EEEECSSTTSCSSCEEEEEECSCSSSCEEEEEET----TSCEEEEETTTCC-------------EEEEECC
T ss_pred EECCCCc--ceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC----CCeEEEEECCCCc-------------EEEEEcC
Confidence 7764321 111111 1123445678899999842 3333322 2448889988642 1222222
Q ss_pred ccccee-EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEE
Q 003878 358 GFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRD 436 (789)
Q Consensus 358 ~~~~~~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~d 436 (789)
...... ..|+|+|+.|+..+. ++.|..+|+.+++.... +. ....+..+.+++++.+++....+ .|++||
T Consensus 560 h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~~~~~~~~-~~--~~~~v~~~~~sp~~~~l~~~~~~---~i~iwd 629 (694)
T 3dm0_A 560 HTGYVSTVAVSPDGSLCASGGK----DGVVLLWDLAEGKKLYS-LE--ANSVIHALCFSPNRYWLCAATEH---GIKIWD 629 (694)
T ss_dssp CSSCEEEEEECTTSSEEEEEET----TSBCEEEETTTTEEEEC-CB--CSSCEEEEEECSSSSEEEEEETT---EEEEEE
T ss_pred CCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCceEEE-ec--CCCcEEEEEEcCCCcEEEEEcCC---CEEEEE
Confidence 222222 348999998775433 46788899987752221 22 23567889999866666665544 499999
Q ss_pred CCCCceeeecccC-------------------CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 437 LKNGSLLHQLPIE-------------------IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 437 l~tG~~~~~l~~~-------------------~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
+.+++.+..+... ...+..++++++++.|+... .-+.+..|++.
T Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs----~Dg~i~iW~i~ 692 (694)
T 3dm0_A 630 LESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGY----TDGVIRVWGIG 692 (694)
T ss_dssp TTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEE----TTSEEEEEEC-
T ss_pred CCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEc----CCCeEEEEecc
Confidence 9887655444321 01245678899998766332 23577777763
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-07 Score=99.40 Aligned_cols=295 Identities=10% Similarity=-0.002 Sum_probs=163.2
Q ss_pred CcEEEEeEEeCCC---CcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccc
Q 003878 130 GTAALIKVSVSED---AKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFL 206 (789)
Q Consensus 130 ~~~~~~~~~~SpD---g~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 206 (789)
+...+..+++||+ |+.++++....| .|++||+.+++.+. .+..... ..+.+....+..++-..+++
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~----~v~vw~~~~~~~~~-~~~~~~~--~~~~~~v~~~~~~~~~~~~~---- 85 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSN----RVTLYECHSQGEIR-LLQSYVD--ADADENFYTCAWTYDSNTSH---- 85 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETT----EEEEEEECGGGCEE-EEEEEEC--SCTTCCEEEEEEEECTTTCC----
T ss_pred CCCceEEEEEecccCCCCceEEEECCCC----EEEEEEcCCCcEEE-eeeeccc--cCCCCcEEEEEeccCCCCCC----
Confidence 3445788999985 665555554333 69999999886542 1111000 00011112222222211113
Q ss_pred ccccceeeEEEeeeccccceeeeeeec----------ccccceEEEEe-CCcEEEEEEccCCCCCCCCCCCccccCCccc
Q 003878 207 YLRGIFFFFYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTH-DSKGFFYSRYPAPKEGKDMDAGTETDSNLYH 275 (789)
Q Consensus 207 ~~~~~~~~~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wsp-Dg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~ 275 (789)
.+++++..+|...+|.+.. .-....++|+| |++.|+....+ .
T Consensus 86 --------~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~d-------------------g 138 (366)
T 3k26_A 86 --------PLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKD-------------------H 138 (366)
T ss_dssp --------EEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETT-------------------S
T ss_pred --------CEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCC-------------------C
Confidence 4788888999999998654 22246789999 88877765432 3
Q ss_pred EEEEEECCCCCCCcEEEEec-CCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccc------cccCC
Q 003878 276 EFYYHFLGTKQSEDILCWKD-PEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGF------KKRDG 348 (789)
Q Consensus 276 ~i~~~~lg~~~~~~~~~~~~-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~------~~~~~ 348 (789)
.|++|++.++. ....+.. ..+...+..+.|+|||++|+....+ ..|.++|+.++... ..+ .++..
T Consensus 139 ~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~-~~~~~~~~~~~~~~ 210 (366)
T 3k26_A 139 ALRLWNIQTDT--LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD-----HSLKLWRINSKRMM-NAIKESYDYNPNKT 210 (366)
T ss_dssp CEEEEETTTTE--EEEEECSTTSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEESCSHHHH-HHHHHHHTCCGGGC
T ss_pred eEEEEEeecCe--EEEEecccccccCceeEEEECCCCCEEEEecCC-----CCEEEEECCCCccc-cccceeEEecCCCC
Confidence 48889987642 2233311 2234457789999999998876543 34888898763100 000 00000
Q ss_pred CCc----------cEeeeccccc-eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCC--------------eEEeccC
Q 003878 349 LLP----------FVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND--------------WFEVIPE 403 (789)
Q Consensus 349 ~~~----------~~~l~~~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~--------------~~~l~~~ 403 (789)
... +......... ....|+ ++.++..+ .+..|..+|+.++.. ...+..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~----~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (366)
T 3k26_A 211 NRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS----CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS 284 (366)
T ss_dssp SSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC----SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS
T ss_pred cccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe----cCCEEEEEeCCCccccccccccCCcchheecccccc
Confidence 000 0000001011 112244 56555332 246788888766531 1111112
Q ss_pred CCCceeeeEEEecC--CEEEEEEEeCCeEEEEEEECCCCceee----ecccC--CeeEEEeecccCCcEEEEEEcCCCCC
Q 003878 404 AERDVLESATAVNL--NQMIVSYLSDVKYVLQIRDLKNGSLLH----QLPIE--IGSVNAISARREDSVVFISFTSFLIP 475 (789)
Q Consensus 404 ~~~~~i~~v~~~~~--~~lv~~~~~~g~~~L~~~dl~tG~~~~----~l~~~--~~~v~~~s~s~d~~~l~~~~ss~~~P 475 (789)
. ..+..+.++++ +.++++...++ .|++||+.+++... .+..+ ...+..+.++++++.++... .-
T Consensus 285 ~--~~v~~~~~s~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----~d 356 (366)
T 3k26_A 285 Q--CDIWYMRFSMDFWQKMLALGNQVG--KLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC----DD 356 (366)
T ss_dssp S--CCSSCCCCEECTTSSEEEEECTTS--CEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE----TT
T ss_pred C--CcEEEEEEcCCCCCcEEEEEecCC--cEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe----CC
Confidence 1 23455666665 67777777776 78999998775422 34433 46788899999998766432 34
Q ss_pred cEEEEEECC
Q 003878 476 GIVYQCNLK 484 (789)
Q Consensus 476 ~~ly~~dl~ 484 (789)
+.++.||+.
T Consensus 357 g~i~iwd~~ 365 (366)
T 3k26_A 357 ASIWRWDRL 365 (366)
T ss_dssp SEEEEEEC-
T ss_pred CEEEEEEec
Confidence 688888864
|
| >3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P structure initiative; 1.80A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.96 E-value=4.6e-09 Score=108.27 Aligned_cols=154 Identities=19% Similarity=0.079 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC-----ceeEEEecCCcccccccccccCCccchhhcCC
Q 003878 599 FDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD-----LFGCALAHVGVMDMLRYHKFTIGHAWVSDFGC 673 (789)
Q Consensus 599 ~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd-----~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~ 673 (789)
.+|+.++++.|.++. .-+++.++|||+||+++..++.++|+ +++++|+..+..+........ ..+ ...+.
T Consensus 77 a~~l~~~i~~l~~~~--~~~~~~lvGHS~Gg~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~--~~~-~~~~~ 151 (254)
T 3ds8_A 77 SKWLKIAMEDLKSRY--GFTQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPNDNG--MDL-SFKKL 151 (254)
T ss_dssp HHHHHHHHHHHHHHH--CCSEEEEEEETHHHHHHHHHHHHSTTCTTSCEEEEEEEESCCTTCSCHHHHC--SCT-TCSSC
T ss_pred HHHHHHHHHHHHHHh--CCCceEEEEECccHHHHHHHHHHccCCccccceeeEEEEcCCcCcccccccc--ccc-ccccC
Confidence 355666667777652 22689999999999999999999998 899999988866654322111 001 11233
Q ss_pred CCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecC------CCCCCCcHHHHHHHHHHHHhhccCCCCCCCCC
Q 003878 674 SEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTAD------HDDRVVPLHSLKLLATMQYVLCTSLENSPQTN 747 (789)
Q Consensus 674 p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~------~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~ 747 (789)
|.....+..+... ...+. ...|+|.++|. +|..||+..+..+...+... ..
T Consensus 152 p~~~~~~~~~~~~--~~~~~-----------~~~~vl~I~G~~~~~~~~Dg~Vp~~ss~~l~~~~~~~----------~~ 208 (254)
T 3ds8_A 152 PNSTPQMDYFIKN--QTEVS-----------PDLEVLAIAGELSEDNPTDGIVPTISSLATRLFMPGS----------AK 208 (254)
T ss_dssp SSCCHHHHHHHHT--GGGSC-----------TTCEEEEEEEESBTTBCBCSSSBHHHHTGGGGTSBTT----------BS
T ss_pred CcchHHHHHHHHH--HhhCC-----------CCcEEEEEEecCCCCCCCCcEeeHHHHHHHHHHhhcc----------Cc
Confidence 4322233333221 11111 14799999999 99999999988776666543 23
Q ss_pred cEEEEEeCC--CCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 748 PIIGRIERK--AGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 748 ~~~l~~~~~--~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
.....++.+ ++|....... +..+.+..||.+..
T Consensus 209 ~~~~~~~~g~~a~Hs~l~~~~---~v~~~i~~fL~~~~ 243 (254)
T 3ds8_A 209 AYIEDIQVGEDAVHQTLHETP---KSIEKTYWFLEKFK 243 (254)
T ss_dssp EEEEEEEESGGGCGGGGGGSH---HHHHHHHHHHHTCC
T ss_pred ceEEEEEeCCCCchhcccCCH---HHHHHHHHHHHHhc
Confidence 344455555 6787654322 45667788887654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-07 Score=103.21 Aligned_cols=298 Identities=8% Similarity=-0.016 Sum_probs=162.2
Q ss_pred EEEEeEEeCC-CCcEEEEEEecCCceEEEEEEEEcCCCceecccc-cccccc----cccCccceeeeeeccccccccccc
Q 003878 132 AALIKVSVSE-DAKYLAYALSYSGSDWATIKLMRIEDQIVEADAL-SWVCFC----FSHSFGYFFHLTISLLNVPTYKLF 205 (789)
Q Consensus 132 ~~~~~~~~Sp-Dg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~p~~~~~ 205 (789)
..+..+++|| ||++||.+.. ...|++||+.++....... ...... ...+.+. ..+..+.|++.
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~-- 112 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGS-----DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS----VETVQWYPHDT-- 112 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEET-----TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC----EEEEEECTTCT--
T ss_pred CcEEEEEEecCCCCEEEEEcC-----CCeEEEEECCCCcccceEeccccccccccccccCCCc----EEEEEEccCCC--
Confidence 4578899999 9999986543 3369999999885432110 000000 0000000 11112223111
Q ss_pred cccccceeeEEEeeeccccceeeeeeec---------ccccceEEEEeCCc---EEEEEEccCCCCCCCCCCCccccCCc
Q 003878 206 LYLRGIFFFFYLFSLVKSTIYSFWSVVS---------QFKFSSIAWTHDSK---GFFYSRYPAPKEGKDMDAGTETDSNL 273 (789)
Q Consensus 206 ~~~~~~~~~~~~~~s~~~g~~~l~~~~~---------~~~~~~~~wspDg~---~i~y~~~~~~~~~~~~~~~~~~~~~~ 273 (789)
.+++++..+|...+|.+.. ......+.|+|++. .|+....
T Consensus 113 ---------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 164 (408)
T 4a11_B 113 ---------GMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTR------------------- 164 (408)
T ss_dssp ---------TCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEES-------------------
T ss_pred ---------cEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcC-------------------
Confidence 3577788899999998754 12235677887543 5555432
Q ss_pred ccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccC--CCCc
Q 003878 274 YHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD--GLLP 351 (789)
Q Consensus 274 ~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~--~~~~ 351 (789)
...|+++++.+... ...+.. +...+..+.|+|+++++++.... ...|.++|+.++......+.... ....
T Consensus 165 ~~~v~~~d~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~ll~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 236 (408)
T 4a11_B 165 GPKVQLCDLKSGSC--SHILQG--HRQEILAVSWSPRYDYILATASA----DSRVKLWDVRRASGCLITLDQHNGKKSQA 236 (408)
T ss_dssp SSSEEEEESSSSCC--CEEECC--CCSCEEEEEECSSCTTEEEEEET----TSCEEEEETTCSSCCSEECCTTTTCSCCC
T ss_pred CCeEEEEeCCCcce--eeeecC--CCCcEEEEEECCCCCcEEEEEcC----CCcEEEEECCCCCccccccccccccccee
Confidence 23488888876533 223332 33446789999999986655543 24488899876421100000000 0000
Q ss_pred cEe-eeccccc-eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccC----CCCceeeeEEEecCCEEEEEEE
Q 003878 352 FVK-LIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPE----AERDVLESATAVNLNQMIVSYL 425 (789)
Q Consensus 352 ~~~-l~~~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~----~~~~~i~~v~~~~~~~lv~~~~ 425 (789)
... ....... ....|+|+|+.|+..+. ++.|..+|+.+++........ ........+.......+++ ..
T Consensus 237 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 311 (408)
T 4a11_B 237 VESANTAHNGKVNGLCFTSDGLHLLTVGT----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF-VP 311 (408)
T ss_dssp TTTSSCSCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE-EE
T ss_pred eccccccccCceeEEEEcCCCCEEEEecC----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEE-Ee
Confidence 000 0111111 12348999998886553 356899999876521111111 1001111111122234444 44
Q ss_pred eCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 426 SDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 426 ~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.++ .|.+||+.+++.+..+..+.+.+..+.+++++..++... .-+.+..||+.+++
T Consensus 312 ~~~--~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~----~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 312 YGS--TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS----RDCNILAWVPSLYE 367 (408)
T ss_dssp ETT--EEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEE----TTSCEEEEEECC--
T ss_pred cCC--EEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEEC----CCCeEEEEeCCCCC
Confidence 454 799999998887777766677788899999998766432 24688999998774
|
| >2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ... | Back alignment and structure |
|---|
Probab=98.94 E-value=6.1e-10 Score=127.61 Aligned_cols=131 Identities=22% Similarity=0.154 Sum_probs=90.1
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCC---CCCHHHHHHHHcCCeEEEEEeecCC-CCCChhHHhcc
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP---SFSVSRTILMRHLGAVFCIANIRGG-GEYGEEWHKGG 590 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~---~~~~~~~~~l~~~G~~v~~~~~RG~-g~~g~~~~~~~ 590 (789)
+.|. ..+ .++.|+.. ..++.|+||++|||....... .+.. ..++.+.|++|+.+|||.+ -+|+... ..
T Consensus 93 ~edc-l~l--~v~~P~~~-~~~~~Pviv~iHGGg~~~g~~~~~~~~~--~~la~~~g~vvv~~nYRlg~~Gf~~~~--~~ 164 (543)
T 2ha2_A 93 SEDC-LYL--NVWTPYPR-PASPTPVLIWIYGGGFYSGAASLDVYDG--RFLAQVEGAVLVSMNYRVGTFGFLALP--GS 164 (543)
T ss_dssp ESCC-CEE--EEEEESSC-CSSCEEEEEEECCSTTTCCCTTSGGGCT--HHHHHHHCCEEEEECCCCHHHHHCCCT--TC
T ss_pred CCcC-CeE--EEeecCCC-CCCCCeEEEEECCCccccCCCCCCcCCh--HHHHhcCCEEEEEecccccccccccCC--CC
Confidence 5677 555 55577652 346789999999986433332 3333 2344447999999999954 1222110 00
Q ss_pred cccCCcchHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhC--CCceeEEEecCCcc
Q 003878 591 ALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQR--PDLFGCALAHVGVM 653 (789)
Q Consensus 591 ~~~~~~~~~~D~~~~~~~L~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--pd~f~a~v~~~p~~ 653 (789)
........+.|.+++++|+.++- ..||+||.|+|+|+||.+++.++... +.+|+++|+++|..
T Consensus 165 ~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~i~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 232 (543)
T 2ha2_A 165 REAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (543)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhCCChhheEEEeechHHHHHHHHHhCcccHHhHhhheeccCCc
Confidence 11223446899999999998762 26999999999999999998887653 46999999999864
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.2e-07 Score=97.22 Aligned_cols=264 Identities=13% Similarity=0.058 Sum_probs=160.0
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..+..+.+ |||++|+.+. ....|++||+.++..... +... .+. ..+..+.|++
T Consensus 19 ~~v~~~~~-~~~~~l~s~~-----~dg~v~vw~~~~~~~~~~-~~~~-------~~~----v~~~~~~~~~--------- 71 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVS-----RDGTVRLWSKDDQWLGTV-VYTG-------QGF----LNSVCYDSEK--------- 71 (313)
T ss_dssp SCEEEEEE-EETTEEEEEE-----TTSEEEEEEESSSEEEEE-EEEC-------SSC----EEEEEEETTT---------
T ss_pred CCcEEEEe-cCCCEEEEEE-----cCCcEEEEECCCCEEEEE-eecC-------Ccc----EEEEEECCCC---------
Confidence 34677888 9999988543 234899999988854421 1110 011 1112233455
Q ss_pred eeeEEEeeeccccceeeeeeec-------------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVS-------------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFY 278 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~-------------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (789)
.+++++..+|...+|.+.. ......+.| +++.|+.... ...|.
T Consensus 72 ---~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~-------------------d~~i~ 127 (313)
T 3odt_A 72 ---ELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSW-------------------DKTAK 127 (313)
T ss_dssp ---TEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEET-------------------TSEEE
T ss_pred ---CEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeC-------------------CCCEE
Confidence 3677788888888887543 111234566 6677665533 23577
Q ss_pred EEECCCCCCCcEEEEecCCCCeeEEEEEEec-CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec
Q 003878 279 YHFLGTKQSEDILCWKDPEHPKYIFSGHVTE-DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID 357 (789)
Q Consensus 279 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~ 357 (789)
+++.+ +....+... ...+..+.++| ++++++....+ ..+.++|.... ...+..
T Consensus 128 ~~d~~----~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~---------------~~~~~~ 181 (313)
T 3odt_A 128 VWKEG----SLVYNLQAH--NASVWDAKVVSFSENKFLTASAD-----KTIKLWQNDKV---------------IKTFSG 181 (313)
T ss_dssp EEETT----EEEEEEECC--SSCEEEEEEEETTTTEEEEEETT-----SCEEEEETTEE---------------EEEECS
T ss_pred EEcCC----cEEEecccC--CCceeEEEEccCCCCEEEEEECC-----CCEEEEecCce---------------EEEEec
Confidence 77721 222333332 33355778888 89988766533 34777884321 111111
Q ss_pred -ccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEE
Q 003878 358 -GFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIR 435 (789)
Q Consensus 358 -~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~ 435 (789)
... .....|++++. ++..+ .++.|..+|+.+++....+..+. ..+..+.+++++ .+++...++ .|++|
T Consensus 182 ~~~~~i~~~~~~~~~~-~~~~~----~dg~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~-~l~~~~~dg--~v~iw 251 (313)
T 3odt_A 182 IHNDVVRHLAVVDDGH-FISCS----NDGLIKLVDMHTGDVLRTYEGHE--SFVYCIKLLPNG-DIVSCGEDR--TVRIW 251 (313)
T ss_dssp SCSSCEEEEEEEETTE-EEEEE----TTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTS-CEEEEETTS--EEEEE
T ss_pred cCcccEEEEEEcCCCe-EEEcc----CCCeEEEEECCchhhhhhhhcCC--ceEEEEEEecCC-CEEEEecCC--EEEEE
Confidence 111 12234788877 44333 24679999998876333443333 567889999855 456666676 79999
Q ss_pred ECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 436 DLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 436 dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
|+.+++....+..+...+..+.+++++. ++ +.+ .-+.++.||+.+++
T Consensus 252 d~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~-~~~---~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 252 SKENGSLKQVITLPAISIWSVDCMSNGD-II-VGS---SDNLVRIFSQEKSR 298 (313)
T ss_dssp CTTTCCEEEEEECSSSCEEEEEECTTSC-EE-EEE---TTSCEEEEESCGGG
T ss_pred ECCCCceeEEEeccCceEEEEEEccCCC-EE-EEe---CCCcEEEEeCCCCc
Confidence 9998887677776666788889999988 33 222 34689999988764
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.94 E-value=4.1e-07 Score=95.72 Aligned_cols=232 Identities=11% Similarity=0.056 Sum_probs=141.6
Q ss_pred EeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceee
Q 003878 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFF 214 (789)
Q Consensus 135 ~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 214 (789)
.++.|+|+++.|.++-...+ +|+.+|.++++........
T Consensus 16 Egp~w~~~~~~l~~~d~~~~----~i~~~d~~~~~~~~~~~~~------------------------------------- 54 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAK----KVCRWDSFTKQVQRVTMDA------------------------------------- 54 (297)
T ss_dssp EEEEEETTTTEEEEEETTTT----EEEEEETTTCCEEEEECSS-------------------------------------
T ss_pred cCCeEECCCCEEEEEECCCC----EEEEEECCCCcEEEEeCCC-------------------------------------
Confidence 47889998888876543333 6999999988543211111
Q ss_pred EEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEe
Q 003878 215 FYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK 294 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~ 294 (789)
....++|+|||+ |++.. ...|++++..++..+ .+..
T Consensus 55 ---------------------~~~~i~~~~dG~-l~v~~--------------------~~~l~~~d~~~g~~~--~~~~ 90 (297)
T 3g4e_A 55 ---------------------PVSSVALRQSGG-YVATI--------------------GTKFCALNWKEQSAV--VLAT 90 (297)
T ss_dssp ---------------------CEEEEEEBTTSS-EEEEE--------------------TTEEEEEETTTTEEE--EEEE
T ss_pred ---------------------ceEEEEECCCCC-EEEEE--------------------CCeEEEEECCCCcEE--EEEe
Confidence 146889999998 55442 125888887654321 2222
Q ss_pred cC-C-CCeeEEEEEEecCCcEEEEEEEcCC-------CCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-eeE
Q 003878 295 DP-E-HPKYIFSGHVTEDGQYLVMCIEENC-------DPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYE 364 (789)
Q Consensus 295 ~~-~-~~~~~~~~~~SpDG~~l~~~~~~~~-------~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 364 (789)
.. . .......+.++|||+ +++...... .....||.++.++. ...+...... .-.
T Consensus 91 ~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~---------------~~~~~~~~~~pngi 154 (297)
T 3g4e_A 91 VDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHH---------------VKKYFDQVDISNGL 154 (297)
T ss_dssp CCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSC---------------EEEEEEEESBEEEE
T ss_pred cCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCC---------------EEEEeeccccccce
Confidence 21 1 123355788999999 444443211 12457888876531 1122222111 223
Q ss_pred EEecCCCEEEEEECCCCCCceEEEEEC--CCCC--CeEEeccCC-CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCC
Q 003878 365 VIANDDTVFTFLTNKDAPKYKIIRVDL--KEPN--DWFEVIPEA-ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN 439 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~~~~~~L~~~dl--~~~~--~~~~l~~~~-~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~t 439 (789)
.|+|||+.+|+.... ..+|+++++ +++. ..+.+..-. ......++.+.+++.+++....++ +|+++++++
T Consensus 155 ~~spdg~~lyv~~~~---~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~--~v~~~d~~t 229 (297)
T 3g4e_A 155 DWSLDHKIFYYIDSL---SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGG--RVIRLDPVT 229 (297)
T ss_dssp EECTTSCEEEEEEGG---GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTT--EEEEECTTT
T ss_pred EEcCCCCEEEEecCC---CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCC--EEEEEcCCC
Confidence 489999999876543 367888886 3443 011222111 123457788887677887766554 699999988
Q ss_pred CceeeecccCCeeEEEeecc-cCCcEEEEEEcCC
Q 003878 440 GSLLHQLPIEIGSVNAISAR-REDSVVFISFTSF 472 (789)
Q Consensus 440 G~~~~~l~~~~~~v~~~s~s-~d~~~l~~~~ss~ 472 (789)
|+....+..|...+..+.+. ++++.|+++..+.
T Consensus 230 G~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 230 GKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp CCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred ceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence 98777887775556677777 7889999887654
|
| >1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ... | Back alignment and structure |
|---|
Probab=98.94 E-value=7.7e-10 Score=126.44 Aligned_cols=221 Identities=17% Similarity=0.110 Sum_probs=127.8
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC---CCCCHHHHHHHHcCCeEEEEEeecCCC-CCChhHHhcc
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT---PSFSVSRTILMRHLGAVFCIANIRGGG-EYGEEWHKGG 590 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~---~~~~~~~~~~l~~~G~~v~~~~~RG~g-~~g~~~~~~~ 590 (789)
+.|. . .+-++.|+.. .++.|+||++|||...... ..+.. ..+..+.|++|+.+|||.+. +|+... ..
T Consensus 89 ~edc-l--~lnv~~P~~~--~~~~Pv~v~iHGGg~~~g~~~~~~~~~--~~la~~~~~vvv~~nYRlg~~Gf~~~~--~~ 159 (529)
T 1p0i_A 89 SEDC-L--YLNVWIPAPK--PKNATVLIWIYGGGFQTGTSSLHVYDG--KFLARVERVIVVSMNYRVGALGFLALP--GN 159 (529)
T ss_dssp CSCC-C--EEEEEEESSC--CSSEEEEEEECCSTTTSCCTTCGGGCT--HHHHHHHCCEEEEECCCCHHHHHCCCT--TC
T ss_pred CCcC-C--eEEEeeCCCC--CCCCeEEEEECCCccccCCCCccccCh--HHHhccCCeEEEEecccccccccccCC--CC
Confidence 5566 4 4456678753 2678999999998533322 22443 23444479999999999541 111100 00
Q ss_pred cccCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC--CCceeEEEecCCcccccccccc----
Q 003878 591 ALAKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQR--PDLFGCALAHVGVMDMLRYHKF---- 661 (789)
Q Consensus 591 ~~~~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--pd~f~a~v~~~p~~d~~~~~~~---- 661 (789)
........+.|.+++++|+.++ -..||+||.|+|+|+||.+++.++... +.+|+++|+++|..........
T Consensus 160 ~~~~~n~gl~D~~~al~wv~~~i~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~~~~~~~~~~~~ 239 (529)
T 1p0i_A 160 PEAPGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSFNAPWAVTSLYEA 239 (529)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCTTSTTSCCCHHHH
T ss_pred CCCcCcccHHHHHHHHHHHHHHHHHhCCChhheEEeeccccHHHHHHHHhCccchHHHHHHHHhcCcccCcccccChHHH
Confidence 0122334589999999999876 236999999999999999999888763 4599999999997643211110
Q ss_pred -cCCccchhhcCCC--CcHHHHHHHHhcCcccCCCCCC--CC-CCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHh
Q 003878 662 -TIGHAWVSDFGCS--EEEEEFYWLIKYSPLHNVRRPW--EQ-NPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYV 735 (789)
Q Consensus 662 -~~~~~~~~e~g~p--~~~~~~~~l~~~sP~~~v~~~~--~~-~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~ 735 (789)
..........|++ ...+..+.|++.++-..+.... .. .........|++ |..+-+.++.++.+.-+
T Consensus 240 ~~~~~~~a~~lgc~~~~~~~~~~cLr~~~~~~l~~a~~~~~~~~~~~~~~f~Pvv------Dg~~l~~~p~~~~~~g~-- 311 (529)
T 1p0i_A 240 RNRTLNLAKLTGCSRENETEIIKCLRNKDPQEILLNEAFVVPYGTPLSVNFGPTV------DGDFLTDMPDILLELGQ-- 311 (529)
T ss_dssp HHHHHHHHHHTTCCCSSHHHHHHHHTTSCHHHHHHHHGGGSSSCCTTCCSSCCCC------CSSSCCSCHHHHHHTTC--
T ss_pred HHHHHHHHHHcCcCCCChHHHHHHHhhCCHHHHHHHhhhhccccccccccceeec------CCccCCcCHHHHHhcCC--
Confidence 0001122345665 2234456666654322111000 00 000001233443 55555666655543322
Q ss_pred hccCCCCCCCCCcEEEEEeCCCCcC
Q 003878 736 LCTSLENSPQTNPIIGRIERKAGHG 760 (789)
Q Consensus 736 ~~~~~~~~~~~~~~~l~~~~~~gH~ 760 (789)
..++|+.+-...++|..
T Consensus 312 --------~~~vp~liG~~~~Eg~~ 328 (529)
T 1p0i_A 312 --------FKKTQILVGVNKDEGTA 328 (529)
T ss_dssp --------SCCSCEEEEEETBTTHH
T ss_pred --------cCCcceEEEeecchHHH
Confidence 22789999999999864
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.93 E-value=5.8e-08 Score=103.37 Aligned_cols=244 Identities=9% Similarity=-0.046 Sum_probs=147.5
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCcee--cccccccccccccCccceeeeeeccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE--ADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLY 207 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 207 (789)
+.-.+..++|||||++|+.+.. ...|++||+.++... ...+... . +
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~-----d~~v~iw~~~~~~~~~~~~~~~~~------~-~-------------------- 57 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSW-----DGSLTVYKFDIQAKNVDLLQSLRY------K-H-------------------- 57 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEET-----TSEEEEEEEETTTTEEEEEEEEEC------S-S--------------------
T ss_pred CCCcEEEEEEcCCCCEEEEEcC-----CCeEEEEEeCCCCccccceeeeec------C-C--------------------
Confidence 3345788999999999986532 247999999887511 0011111 0 0
Q ss_pred cccceeeEEEeeeccccceeeeeeecccccceEEEEeCCc-EEEEEEccCCCCCCCCCCCccccCCcccEEEEEEC-CCC
Q 003878 208 LRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSK-GFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFL-GTK 285 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~-~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l-g~~ 285 (789)
....++|+||++ .|+....+ ..|++|++ .+.
T Consensus 58 ----------------------------~v~~~~~~~~~~~~l~~~~~d-------------------g~i~~wd~~~~~ 90 (342)
T 1yfq_A 58 ----------------------------PLLCCNFIDNTDLQIYVGTVQ-------------------GEILKVDLIGSP 90 (342)
T ss_dssp ----------------------------CEEEEEEEESSSEEEEEEETT-------------------SCEEEECSSSSS
T ss_pred ----------------------------ceEEEEECCCCCcEEEEEcCC-------------------CeEEEEEeccCC
Confidence 257899999999 88766432 24888888 654
Q ss_pred CCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCC---------CCCCcccccccCCCCccEeee
Q 003878 286 QSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA---------LPEGLEGFKKRDGLLPFVKLI 356 (789)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~---------g~~~~~~~~~~~~~~~~~~l~ 356 (789)
.. ..+....+...+..+.|+| ++.|+.... ...|.++|+.+ +. +...+.
T Consensus 91 ~~---~~~~~~~~~~~v~~l~~~~-~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~-------------~~~~~~ 148 (342)
T 1yfq_A 91 SF---QALTNNEANLGICRICKYG-DDKLIAASW-----DGLIEVIDPRNYGDGVIAVKNL-------------NSNNTK 148 (342)
T ss_dssp SE---EECBSCCCCSCEEEEEEET-TTEEEEEET-----TSEEEEECHHHHTTBCEEEEES-------------CSSSSS
T ss_pred ce---EeccccCCCCceEEEEeCC-CCEEEEEcC-----CCeEEEEcccccccccccccCC-------------eeeEEe
Confidence 22 2333211344567899999 888876553 34588888764 21 000111
Q ss_pred ccccceeEEEecCCCEEEEEECCCCCCceEEEEECCC-CCC-eEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEE
Q 003878 357 DGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE-PND-WFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQ 433 (789)
Q Consensus 357 ~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~-~~~-~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~ 433 (789)
.........|++++ ++..+. +..|..+|+.+ +.. ....... ....+..+.+++ ++.+++....++ .+.
T Consensus 149 ~~~~v~~~~~~~~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~l~~~~~dg--~i~ 219 (342)
T 1yfq_A 149 VKNKIFTMDTNSSR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESG-LKYQIRDVALLPKEQEGYACSSIDG--RVA 219 (342)
T ss_dssp SCCCEEEEEECSSE--EEEEES----TTEEEEEESSCCTTCCCEEEECS-CSSCEEEEEECSGGGCEEEEEETTS--EEE
T ss_pred eCCceEEEEecCCc--EEEEeC----CCeEEEEECCccccccceeeecC-CCCceeEEEECCCCCCEEEEEecCC--cEE
Confidence 11111112366655 544332 35799999987 541 2222222 235678899987 777788888887 577
Q ss_pred EEECCCC------ceeeecccCC---------eeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 434 IRDLKNG------SLLHQLPIEI---------GSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 434 ~~dl~tG------~~~~~l~~~~---------~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+|+++.+ +....+.... +.+..+.++++++.++... .-+.++.||+.+++
T Consensus 220 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG----SDGIISCWNLQTRK 284 (342)
T ss_dssp EEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE----TTSCEEEEETTTTE
T ss_pred EEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEec----CCceEEEEcCccHh
Confidence 7777654 3323333322 2677889999988665433 24689999998884
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=98.92 E-value=8.7e-08 Score=101.51 Aligned_cols=201 Identities=12% Similarity=-0.010 Sum_probs=117.2
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCC---eeEEEEEEecCCcEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHP---KYIFSGHVTEDGQYL 314 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~---~~~~~~~~SpDG~~l 314 (789)
..++|+|||+.++++... ...|+++++.+..... .+...... .....+.+||||++|
T Consensus 37 ~~~~~s~dg~~l~v~~~~------------------~~~v~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~dg~~l 96 (337)
T 1pby_B 37 MVPMVAPGGRIAYATVNK------------------SESLVKIDLVTGETLG--RIDLSTPEERVKSLFGAALSPDGKTL 96 (337)
T ss_dssp CCEEECTTSSEEEEEETT------------------TTEEEEEETTTCCEEE--EEECCBTTEEEECTTCEEECTTSSEE
T ss_pred cceEEcCCCCEEEEEeCC------------------CCeEEEEECCCCCeEe--eEEcCCcccccccccceEECCCCCEE
Confidence 679999999999887432 2468888887654222 22221100 011257899999999
Q ss_pred EEEEEcC-----CC--CceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEE
Q 003878 315 VMCIEEN-----CD--PVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKII 387 (789)
Q Consensus 315 ~~~~~~~-----~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~ 387 (789)
++..... .. ....|+++|++++. ....+..+.......|+|||+.|++. +..|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-------------~~~~~~~~~~~~~~~~s~dg~~l~~~------~~~i~ 157 (337)
T 1pby_B 97 AIYESPVRLELTHFEVQPTRVALYDAETLS-------------RRKAFEAPRQITMLAWARDGSKLYGL------GRDLH 157 (337)
T ss_dssp EEEEEEEEECSSCEEECCCEEEEEETTTTE-------------EEEEEECCSSCCCEEECTTSSCEEEE------SSSEE
T ss_pred EEEecccccccccccccCceEEEEECCCCc-------------EEEEEeCCCCcceeEECCCCCEEEEe------CCeEE
Confidence 8875210 00 13679999998742 11122212222234589999988876 24699
Q ss_pred EEECCCCCCeEEeccCCCCceeeeEEEecCC-EEEEEEEeCCe---------------------EEEEEEECCCCceeee
Q 003878 388 RVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVK---------------------YVLQIRDLKNGSLLHQ 445 (789)
Q Consensus 388 ~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~-~lv~~~~~~g~---------------------~~L~~~dl~tG~~~~~ 445 (789)
.+|+++++ ....++...... .+.+++++ .+++....++. ..|+++|+++++.. .
T Consensus 158 ~~d~~~~~-~~~~~~~~~~~~--~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~ 233 (337)
T 1pby_B 158 VMDPEAGT-LVEDKPIQSWEA--ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-M 233 (337)
T ss_dssp EEETTTTE-EEEEECSTTTTT--TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-E
T ss_pred EEECCCCc-EeeeeeccccCC--CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-E
Confidence 99998775 222233221000 11233322 23222111111 16899999987763 4
Q ss_pred cccC--CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 446 LPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 446 l~~~--~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+... ...+..+.+++|++.+++. -..++.||+.+++
T Consensus 234 ~~~~~~~~~~~~~~~s~dg~~l~~~------~~~v~~~d~~~~~ 271 (337)
T 1pby_B 234 REVRIMDVFYFSTAVNPAKTRAFGA------YNVLESFDLEKNA 271 (337)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEE------ESEEEEEETTTTE
T ss_pred eecCCCCCceeeEEECCCCCEEEEe------CCeEEEEECCCCc
Confidence 4332 2345568899999988876 2799999998884
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.91 E-value=4.4e-07 Score=99.56 Aligned_cols=205 Identities=11% Similarity=0.029 Sum_probs=126.7
Q ss_pred cceEEEEe-CCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC-----CcEEEEecCCCCeeEEEEEEecC
Q 003878 237 FSSIAWTH-DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS-----EDILCWKDPEHPKYIFSGHVTED 310 (789)
Q Consensus 237 ~~~~~wsp-Dg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~-----~~~~~~~~~~~~~~~~~~~~SpD 310 (789)
...++|+| |++.|+....+ ..|.+|++.+... +....+... ...+..+.|+|+
T Consensus 84 V~~~~~~p~~~~~l~s~s~d-------------------g~v~vw~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~ 142 (402)
T 2aq5_A 84 VLDIAWCPHNDNVIASGSED-------------------CTVMVWEIPDGGLVLPLREPVITLEGH--TKRVGIVAWHPT 142 (402)
T ss_dssp EEEEEECTTCTTEEEEEETT-------------------SEEEEEECCTTCCSSCBCSCSEEEECC--SSCEEEEEECSS
T ss_pred EEEEEeCCCCCCEEEEEeCC-------------------CeEEEEEccCCCCccccCCceEEecCC--CCeEEEEEECcC
Confidence 57899999 88877765432 3588888876532 223333332 344678999999
Q ss_pred CcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEee--eccccce-eEEEecCCCEEEEEECCCCCCceEE
Q 003878 311 GQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL--IDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKII 387 (789)
Q Consensus 311 G~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l--~~~~~~~-~~~~s~dG~~l~~~tn~~~~~~~L~ 387 (789)
|+.++++... ...|.++|+.++. ....+ ....... ...|+|+|+.|+..+. ++.|.
T Consensus 143 ~~~~l~s~~~----dg~i~iwd~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~ 201 (402)
T 2aq5_A 143 AQNVLLSAGC----DNVILVWDVGTGA-------------AVLTLGPDVHPDTIYSVDWSRDGALICTSCR----DKRVR 201 (402)
T ss_dssp BTTEEEEEET----TSCEEEEETTTTE-------------EEEEECTTTCCSCEEEEEECTTSSCEEEEET----TSEEE
T ss_pred CCCEEEEEcC----CCEEEEEECCCCC-------------ccEEEecCCCCCceEEEEECCCCCEEEEEec----CCcEE
Confidence 9544444432 2448899998742 12222 1111112 2348999988876543 36899
Q ss_pred EEECCCCCCeEEe-ccCCCCceeeeEEEecCCEEEEEEEe-CCeEEEEEEECCCCce-eeecccC-CeeEEEeecccCCc
Q 003878 388 RVDLKEPNDWFEV-IPEAERDVLESATAVNLNQMIVSYLS-DVKYVLQIRDLKNGSL-LHQLPIE-IGSVNAISARREDS 463 (789)
Q Consensus 388 ~~dl~~~~~~~~l-~~~~~~~~i~~v~~~~~~~lv~~~~~-~g~~~L~~~dl~tG~~-~~~l~~~-~~~v~~~s~s~d~~ 463 (789)
.+|+.+++....+ ..+. ...+..+.+++++.+++.... .....|.+||+.+++. ......+ ...+..+.++++++
T Consensus 202 iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 280 (402)
T 2aq5_A 202 VIEPRKGTVVAEKDRPHE-GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTN 280 (402)
T ss_dssp EEETTTTEEEEEEECSSC-SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTT
T ss_pred EEeCCCCceeeeeccCCC-CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCC
Confidence 9999887633333 2333 233667888887777776621 1234899999986653 2222222 34466778899999
Q ss_pred EEEEEEcCCCCCcEEEEEECCCCC
Q 003878 464 VVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 464 ~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.++++.+ .-+.++.||+.+++
T Consensus 281 ~l~~~g~---~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 281 IVYLCGK---GDSSIRYFEITSEA 301 (402)
T ss_dssp EEEEEET---TCSCEEEEEECSST
T ss_pred EEEEEEc---CCCeEEEEEecCCC
Confidence 8776543 24588899988775
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.6e-07 Score=100.62 Aligned_cols=166 Identities=11% Similarity=0.023 Sum_probs=87.4
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC-CcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS-EDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~-~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..++|+|||+ ++++.. ...+|+++++..... .....+..+. ......++|||||++|++
T Consensus 144 ~~~~~spdg~-l~v~~~------------------~~~~v~~~~~~~~g~~~~~~~~~~~~-g~~p~~~~~spdg~~l~v 203 (347)
T 3hfq_A 144 HYTDLTPDNR-LAVIDL------------------GSDKVYVYNVSDAGQLSEQSVLTMEA-GFGPRHLVFSPDGQYAFL 203 (347)
T ss_dssp EEEEECTTSC-EEEEET------------------TTTEEEEEEECTTSCEEEEEEEECCT-TCCEEEEEECTTSSEEEE
T ss_pred eEEEECCCCc-EEEEeC------------------CCCEEEEEEECCCCcEEEeeeEEcCC-CCCCceEEECCCCCEEEE
Confidence 4689999999 665532 223688888863221 1111112221 112346899999999887
Q ss_pred EEEcCCCCceEEEEEECC--CCCCCcccccccCCCCccEeeec---c----ccceeEEEecCCCEEEEEECCCCCCceEE
Q 003878 317 CIEENCDPVNKVYYCDLS--ALPEGLEGFKKRDGLLPFVKLID---G----FDAQYEVIANDDTVFTFLTNKDAPKYKII 387 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~--~g~~~~~~~~~~~~~~~~~~l~~---~----~~~~~~~~s~dG~~l~~~tn~~~~~~~L~ 387 (789)
.... ...+++++++ ++. + .....+.. + .......|+|||++||+.... +..|.
T Consensus 204 ~~~~----~~~v~v~~~~~~~g~--~---------~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~---~~~v~ 265 (347)
T 3hfq_A 204 AGEL----SSQIASLKYDTQTGA--F---------TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG---YNTLA 265 (347)
T ss_dssp EETT----TTEEEEEEEETTTTE--E---------EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET---TTEEE
T ss_pred EeCC----CCEEEEEEecCCCCc--e---------EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC---CCEEE
Confidence 6532 2345555554 321 0 00111111 0 011224489999998876543 35677
Q ss_pred EEECCCCCCeEEe--ccCCCCceeeeEEEecCCE-EEEEEEeCCeEEEEEEECCCCce
Q 003878 388 RVDLKEPNDWFEV--IPEAERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 388 ~~dl~~~~~~~~l--~~~~~~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
+++++....++.+ ++.. ......++++++++ |++....++.-.++.+|.++|+.
T Consensus 266 v~~~~~~g~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 266 VFAVTADGHLTLIQQISTE-GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp EEEECGGGCEEEEEEEECS-SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEEECCCCcEEEeEEEecC-CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 7777532112222 2221 23356788998655 55444444544555557777765
|
| >3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-08 Score=108.25 Aligned_cols=101 Identities=18% Similarity=0.142 Sum_probs=67.2
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHc-CCeEEEEEeecCCCCCChhHHhcccccCCcchH----HHHHHHHHHHHH
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRH-LGAVFCIANIRGGGEYGEEWHKGGALAKKQNCF----DDFISASEYLIS 611 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~-~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~----~D~~~~~~~L~~ 611 (789)
..|.||++||+.+.. ..|.. ....|.+ .+|.|+++|.||.|..... .....++ +|+.+.++.|..
T Consensus 37 ~~p~lvllHG~~~~~--~~w~~-~~~~L~~~~~~~via~Dl~GhG~S~~~-------~~~~~~~~~~a~dl~~~l~~l~~ 106 (316)
T 3c5v_A 37 EGPVLLLLHGGGHSA--LSWAV-FTAAIISRVQCRIVALDLRSHGETKVK-------NPEDLSAETMAKDVGNVVEAMYG 106 (316)
T ss_dssp SSCEEEEECCTTCCG--GGGHH-HHHHHHTTBCCEEEEECCTTSTTCBCS-------CTTCCCHHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCccc--ccHHH-HHHHHhhcCCeEEEEecCCCCCCCCCC-------CccccCHHHHHHHHHHHHHHHhc
Confidence 357899999976543 23443 3456662 2999999999998764211 1112234 455555555532
Q ss_pred cCCCCCCcEEEEeeChHHHHHHHHHHh--CCCceeEEEecCC
Q 003878 612 AGYTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVG 651 (789)
Q Consensus 612 ~~~~d~~~i~i~G~S~GG~l~~~~~~~--~pd~f~a~v~~~p 651 (789)
+. ++++.++|||+||.+++.++.+ +|+ ++++|+..+
T Consensus 107 -~~--~~~~~lvGhSmGG~ia~~~A~~~~~p~-v~~lvl~~~ 144 (316)
T 3c5v_A 107 -DL--PPPIMLIGHSMGGAIAVHTASSNLVPS-LLGLCMIDV 144 (316)
T ss_dssp -TC--CCCEEEEEETHHHHHHHHHHHTTCCTT-EEEEEEESC
T ss_pred -cC--CCCeEEEEECHHHHHHHHHHhhccCCC-cceEEEEcc
Confidence 11 2689999999999999999985 577 788877654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.90 E-value=7.9e-08 Score=102.77 Aligned_cols=203 Identities=11% Similarity=0.041 Sum_probs=108.6
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...++|+|||+.|+-...+ ..|++|++.........+.....+...+..+.|+|||++|+.
T Consensus 110 V~~v~~sp~g~~las~s~D-------------------~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s 170 (330)
T 2hes_X 110 VKGVAWSNDGYYLATCSRD-------------------KSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLAS 170 (330)
T ss_dssp EEEEEECTTSCEEEEEETT-------------------SCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred EEEEEECCCCCEEEEEeCC-------------------CEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEE
Confidence 4689999999988866433 348888885432222222222233445678999999998876
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecC--CCEEEEEECCCCCCceEEEEECCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIAND--DTVFTFLTNKDAPKYKIIRVDLKE 393 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~d--G~~l~~~tn~~~~~~~L~~~dl~~ 393 (789)
.+.+ ..|.++++.++. ..+...+........ ..|+|+ +..|+..+. +..|..+++.+
T Consensus 171 ~s~D-----~~i~iW~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----D~~v~iw~~~~ 230 (330)
T 2hes_X 171 SSYD-----DTVRIWKDYDDD-----------WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD----DSTVRVWKYMG 230 (330)
T ss_dssp EETT-----SCEEEEEEETTE-----------EEEEEEECCCSSCEEEEEECCSSSSCEEEEEET----TSCEEEEEEEE
T ss_pred EcCC-----CeEEEEECCCCC-----------eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC----CCeEEEEEecC
Confidence 6543 336666665421 011222222222222 337887 444543332 24466666543
Q ss_pred CC-----CeE--EeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce--eeec-ccCCe-eEEEeeccc--
Q 003878 394 PN-----DWF--EVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL--LHQL-PIEIG-SVNAISARR-- 460 (789)
Q Consensus 394 ~~-----~~~--~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~--~~~l-~~~~~-~v~~~s~s~-- 460 (789)
+. .+. ..++......+..+++++ +.++++...++ .|++|+..+|+. .... ..... .+..+++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~~~l~s~~~dg--~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~ 307 (330)
T 2hes_X 231 DDEDDQQEWVCEAILPDVHKRQVYNVAWGF-NGLIASVGADG--VLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELN 307 (330)
T ss_dssp ECTTSCEEEEEEEECCSCCSSCEEEEEECT-TSCEEEEETTS--CEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC---
T ss_pred CCccccceeEEeeecccccccceEEEEEcC-CCEEEEEeCCC--EEEEEEcCCCceEEEeccccccccceEEEEEEecCC
Confidence 21 111 222321235678888887 55777777787 577788776642 1121 22233 677788887
Q ss_pred CCcEEEEEEcCCCCCcEEEEEECCC
Q 003878 461 EDSVVFISFTSFLIPGIVYQCNLKT 485 (789)
Q Consensus 461 d~~~l~~~~ss~~~P~~ly~~dl~t 485 (789)
++..| ++.+ .-+.+..||+.+
T Consensus 308 ~~~~l-as~s---~Dg~v~~W~~~~ 328 (330)
T 2hes_X 308 GKTIL-ATGG---DDGIVNFWSLEK 328 (330)
T ss_dssp --CCE-EEEE---TTSEEEEEEC--
T ss_pred CceEE-EEec---CCCcEEEEEecc
Confidence 45544 3332 235788887643
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=98.90 E-value=5.2e-07 Score=96.82 Aligned_cols=194 Identities=12% Similarity=0.024 Sum_probs=117.7
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...++|+||++.|+-... ...|++|++.++.. ...+.. +...+..++|+|||++|+.
T Consensus 79 V~~~~~~~~~~~l~s~s~-------------------D~~v~lwd~~~~~~--~~~~~~--h~~~v~~v~~sp~~~~l~s 135 (343)
T 2xzm_R 79 VSDLALSQENCFAISSSW-------------------DKTLRLWDLRTGTT--YKRFVG--HQSEVYSVAFSPDNRQILS 135 (343)
T ss_dssp EEEEEECSSTTEEEEEET-------------------TSEEEEEETTSSCE--EEEEEC--CCSCEEEEEECSSTTEEEE
T ss_pred eEEEEECCCCCEEEEEcC-------------------CCcEEEEECCCCcE--EEEEcC--CCCcEEEEEECCCCCEEEE
Confidence 467899999998875533 24688999876532 223333 2344678999999999986
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee---cccc-ceeEEEecCC----------CEEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI---DGFD-AQYEVIANDD----------TVFTFLTNKDAP 382 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~---~~~~-~~~~~~s~dG----------~~l~~~tn~~~~ 382 (789)
...+ ..|.++|+.... ..... .... .....|+|++ ..|+..+ .
T Consensus 136 ~~~d-----~~i~~wd~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~----~ 192 (343)
T 2xzm_R 136 AGAE-----REIKLWNILGEC--------------KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG----W 192 (343)
T ss_dssp EETT-----SCEEEEESSSCE--------------EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE----T
T ss_pred EcCC-----CEEEEEeccCCc--------------eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEc----C
Confidence 5532 347888876421 00000 0001 1112366665 4444333 2
Q ss_pred CceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCc-eeeecccCCeeEEEeecccC
Q 003878 383 KYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGS-LLHQLPIEIGSVNAISARRE 461 (789)
Q Consensus 383 ~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~-~~~~l~~~~~~v~~~s~s~d 461 (789)
+..|..+|..... ...+..+. ..+..+++++++.++++...++ .|++||+.+.. ....+. ....+..++++|+
T Consensus 193 d~~i~iwd~~~~~-~~~~~~h~--~~v~~~~~s~~g~~l~sgs~dg--~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~ 266 (343)
T 2xzm_R 193 DGRLKVWNTNFQI-RYTFKAHE--SNVNHLSISPNGKYIATGGKDK--KLLIWDILNLTYPQREFD-AGSTINQIAFNPK 266 (343)
T ss_dssp TSEEEEEETTTEE-EEEEECCS--SCEEEEEECTTSSEEEEEETTC--EEEEEESSCCSSCSEEEE-CSSCEEEEEECSS
T ss_pred CCEEEEEcCCCce-eEEEcCcc--ccceEEEECCCCCEEEEEcCCC--eEEEEECCCCcccceeec-CCCcEEEEEECCC
Confidence 4678888854321 22333333 5678899998777888888887 78999984332 222222 2344778889999
Q ss_pred CcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 462 DSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 462 ~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+..+.... -..+..||+.+++
T Consensus 267 ~~~la~~~-----d~~v~iw~~~~~~ 287 (343)
T 2xzm_R 267 LQWVAVGT-----DQGVKIFNLMTQS 287 (343)
T ss_dssp SCEEEEEE-----SSCEEEEESSSCC
T ss_pred CCEEEEEC-----CCCEEEEEeCCCC
Confidence 87655332 2468899987764
|
| >3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-08 Score=110.55 Aligned_cols=121 Identities=14% Similarity=0.026 Sum_probs=84.9
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHc------CCeEEEEEeecCCCCCChhHHhcc
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRH------LGAVFCIANIRGGGEYGEEWHKGG 590 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~------~G~~v~~~~~RG~g~~g~~~~~~~ 590 (789)
+| .+|++..+.++. +..|.||++||.++.... |... ...|.+ .||.|+++|.||.|.....
T Consensus 93 ~g-~~i~~~~~~~~~----~~~~pllllHG~~~s~~~--~~~~-~~~L~~~~~~~~~gf~vv~~DlpG~G~S~~~----- 159 (408)
T 3g02_A 93 EG-LTIHFAALFSER----EDAVPIALLHGWPGSFVE--FYPI-LQLFREEYTPETLPFHLVVPSLPGYTFSSGP----- 159 (408)
T ss_dssp TT-EEEEEEEECCSC----TTCEEEEEECCSSCCGGG--GHHH-HHHHHHHCCTTTCCEEEEEECCTTSTTSCCS-----
T ss_pred CC-EEEEEEEecCCC----CCCCeEEEECCCCCcHHH--HHHH-HHHHhcccccccCceEEEEECCCCCCCCCCC-----
Confidence 89 999887765442 345779999998776433 4443 344443 4999999999998754321
Q ss_pred cccCCcchHHHHHHHHHHHHHcCCCCCC-cEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 591 ALAKKQNCFDDFISASEYLISAGYTQSR-KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 591 ~~~~~~~~~~D~~~~~~~L~~~~~~d~~-~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
......+++++.+.+..|++. ...+ +++++|+|+||.++..++.++|++.+.++...++.
T Consensus 160 -~~~~~~~~~~~a~~~~~l~~~--lg~~~~~~lvG~S~Gg~ia~~~A~~~p~~~~~~l~~~~~~ 220 (408)
T 3g02_A 160 -PLDKDFGLMDNARVVDQLMKD--LGFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNFCNMS 220 (408)
T ss_dssp -CSSSCCCHHHHHHHHHHHHHH--TTCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCCC
T ss_pred -CCCCCCCHHHHHHHHHHHHHH--hCCCCCEEEeCCCchHHHHHHHHHhCCCceEEEEeCCCCC
Confidence 112244577777777776665 2233 89999999999999999999998777777655443
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=98.89 E-value=5e-07 Score=94.90 Aligned_cols=245 Identities=13% Similarity=0.005 Sum_probs=141.0
Q ss_pred cEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCce-ecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV-EADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 131 ~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
...+..+++||||++||-+. ...+|+|||++++.. ....+... .+
T Consensus 9 ~~~V~~~~~s~~g~~las~s-----~D~~v~iw~~~~~~~~~~~~l~gH-------~~---------------------- 54 (297)
T 2pm7_B 9 NEMIHDAVMDYYGKRMATCS-----SDKTIKIFEVEGETHKLIDTLTGH-------EG---------------------- 54 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEE-----TTSCEEEEEBCSSCBCCCEEECCC-------SS----------------------
T ss_pred cCceEEEEECCCCCEEEEEe-----CCCEEEEEecCCCCcEEEEEEccc-------cC----------------------
Confidence 34578899999999998543 345799999976421 11122211 01
Q ss_pred cceeeEEEeeeccccceeeeeeecccccceEEEEeC--CcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHD--SKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS 287 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspD--g~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~ 287 (789)
....++|+|+ |+.|+-... ...|.+|++.++..
T Consensus 55 --------------------------~V~~v~~s~~~~g~~l~s~s~-------------------D~~v~iWd~~~~~~ 89 (297)
T 2pm7_B 55 --------------------------PVWRVDWAHPKFGTILASCSY-------------------DGKVMIWKEENGRW 89 (297)
T ss_dssp --------------------------CEEEEEECCGGGCSEEEEEET-------------------TTEEEEEEBSSSCB
T ss_pred --------------------------CeEEEEecCCCcCCEEEEEcC-------------------CCEEEEEEcCCCce
Confidence 2467899874 777765433 24688899876543
Q ss_pred CcEEEEecCCCCeeEEEEEEecC--CcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce-eE
Q 003878 288 EDILCWKDPEHPKYIFSGHVTED--GQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YE 364 (789)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~SpD--G~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 364 (789)
.....+.. +...+..+.|+|+ |++|+..+. ...|.++|+.++.. .....+....... ..
T Consensus 90 ~~~~~~~~--h~~~v~~v~~~p~~~g~~l~s~s~-----d~~v~~wd~~~~~~-----------~~~~~~~~h~~~v~~~ 151 (297)
T 2pm7_B 90 SQIAVHAV--HSASVNSVQWAPHEYGPMLLVASS-----DGKVSVVEFKENGT-----------TSPIIIDAHAIGVNSA 151 (297)
T ss_dssp CCCEEECC--CSSCEEEEEECCGGGCSEEEEEET-----TSEEEEEEBCSSSC-----------BCCEEEECCSSCEEEE
T ss_pred EEEEEeec--CCCceeEEEeCcCCCCcEEEEEEC-----CCcEEEEEecCCCc-----------eeeeeeecccCccceE
Confidence 33333332 2344678999998 888876543 34588888876310 0011111111111 13
Q ss_pred EEecC-------------CCEEEEEECCCCCCceEEEEECCCCCC-e---EEeccCCCCceeeeEEEecC---CEEEEEE
Q 003878 365 VIAND-------------DTVFTFLTNKDAPKYKIIRVDLKEPND-W---FEVIPEAERDVLESATAVNL---NQMIVSY 424 (789)
Q Consensus 365 ~~s~d-------------G~~l~~~tn~~~~~~~L~~~dl~~~~~-~---~~l~~~~~~~~i~~v~~~~~---~~lv~~~ 424 (789)
.|+|+ ++.|+..+. +..|..+|+.++.. + ..+..+. ..+..++++++ +.++++.
T Consensus 152 ~~~p~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~--~~V~~v~~sp~~~~~~~las~ 225 (297)
T 2pm7_B 152 SWAPATIEEDGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS--DWVRDVAWSPTVLLRSYMASV 225 (297)
T ss_dssp EECCCC------------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS--SCEEEEEECCCCSSSEEEEEE
T ss_pred eecCCcccccccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCC--CceEEEEECCCCCCceEEEEE
Confidence 36775 345543332 34577777765431 1 2232333 56889999985 3788888
Q ss_pred EeCCeEEEEEEECCCCc--e-eeecc--cCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 425 LSDVKYVLQIRDLKNGS--L-LHQLP--IEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 425 ~~~g~~~L~~~dl~tG~--~-~~~l~--~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
..|+ .|.+|+++++. . ...+. .....+..++++|+++.|+.... -..+.+|+..
T Consensus 226 s~D~--~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~----D~~v~lw~~~ 284 (297)
T 2pm7_B 226 SQDR--TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG----DNKVTLWKEN 284 (297)
T ss_dssp ETTS--CEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET----TSCEEEEEEC
T ss_pred ECCC--cEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC----CCcEEEEEEC
Confidence 8887 57788876542 1 12221 12455778899999987664332 2456666654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.8e-08 Score=125.75 Aligned_cols=271 Identities=13% Similarity=0.035 Sum_probs=172.8
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.+..+.+||||++++.+.. ...|++||+.++..+.. +... .+. ..+..+.|++
T Consensus 842 ~v~~~~~sp~~~~l~~~~~-----dg~v~vwd~~~~~~~~~-~~~h-------~~~----v~~v~~spdg---------- 894 (1249)
T 3sfz_A 842 TIQYCDFSPYDHLAVIALS-----QYCVELWNIDSRLKVAD-CRGH-------LSW----VHGVMFSPDG---------- 894 (1249)
T ss_dssp CCCEEEECSSTTEEEEECS-----SSCEEEEETTTTEEEEE-ECCC-------SSC----EEEEEECTTS----------
T ss_pred ceEEEEEcCCCCEEEEEeC-----CCeEEEEEcCCCceeee-cCCC-------ccc----eEEEEECCCC----------
Confidence 4567889999999986432 34699999999865431 1111 111 1222334555
Q ss_pred eeEEEeeeccccceeeeeeec-----------------------------------------------ccccceEEEEeC
Q 003878 213 FFFYLFSLVKSTIYSFWSVVS-----------------------------------------------QFKFSSIAWTHD 245 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~-----------------------------------------------~~~~~~~~wspD 245 (789)
..++++..+|...+|.+.. ......++|+||
T Consensus 895 --~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 972 (1249)
T 3sfz_A 895 --SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPH 972 (1249)
T ss_dssp --SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTT
T ss_pred --CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCC
Confidence 3566777888888887431 112356789999
Q ss_pred CcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCc
Q 003878 246 SKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPV 325 (789)
Q Consensus 246 g~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~ 325 (789)
|+.+++...+ ..|+++++.+... ...+ ..+...+..+.|||||++|+..+. .
T Consensus 973 g~~l~~g~~~-------------------g~i~i~d~~~~~~--~~~~--~~h~~~v~~l~~s~dg~~l~s~~~-----d 1024 (1249)
T 3sfz_A 973 LEYVAFGDED-------------------GAIKIIELPNNRV--FSSG--VGHKKAVRHIQFTADGKTLISSSE-----D 1024 (1249)
T ss_dssp SSEEEEEETT-------------------SCCEEEETTTTSC--EEEC--CCCSSCCCCEEECSSSSCEEEECS-----S
T ss_pred CCEEEEEcCC-------------------CCEEEEEcCCCce--eeec--ccCCCceEEEEECCCCCEEEEEcC-----C
Confidence 9988876433 2367778765432 2222 223334557899999999986543 2
Q ss_pred eEEEEEECCCCCCCcccccccCCCCccEeeeccccce-eEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCC
Q 003878 326 NKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA 404 (789)
Q Consensus 326 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~ 404 (789)
..|.++++.++. ........... ...+++++. ++..+ .++.|..+|+.+++....+..+.
T Consensus 1025 g~i~vwd~~~~~--------------~~~~~~~~~~v~~~~~~~~~~-l~~~~----~dg~v~vwd~~~~~~~~~~~~~~ 1085 (1249)
T 3sfz_A 1025 SVIQVWNWQTGD--------------YVFLQAHQETVKDFRLLQDSR-LLSWS----FDGTVKVWNVITGRIERDFTCHQ 1085 (1249)
T ss_dssp SBEEEEETTTTE--------------EECCBCCSSCEEEEEECSSSE-EEEEE----SSSEEEEEETTTTCCCEEEECCS
T ss_pred CEEEEEECCCCc--------------eEEEecCCCcEEEEEEcCCCc-EEEEE----CCCcEEEEECCCCceeEEEcccC
Confidence 458889988742 11111111111 233677654 44333 24679999998876444554444
Q ss_pred CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 405 ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 405 ~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
..+..+++++++.++++...++ .|++||+.+++....+..+.+.+..++++++++.++... .-+.++.||+.
T Consensus 1086 --~~v~~~~~s~d~~~l~s~s~d~--~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~----~dg~i~vwd~~ 1157 (1249)
T 3sfz_A 1086 --GTVLSCAISSDATKFSSTSADK--TAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGD----DNGEIRIWNVS 1157 (1249)
T ss_dssp --SCCCCEEECSSSSSCEEECCSS--CCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEE----TTSCCCEEESS
T ss_pred --CcEEEEEECCCCCEEEEEcCCC--cEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEe----CCCEEEEEECC
Confidence 4577889998777777777776 688999988877666666677788899999999776543 23568899998
Q ss_pred CCC
Q 003878 485 TET 487 (789)
Q Consensus 485 tg~ 487 (789)
+++
T Consensus 1158 ~~~ 1160 (1249)
T 3sfz_A 1158 DGQ 1160 (1249)
T ss_dssp SSC
T ss_pred CCc
Confidence 875
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-07 Score=100.83 Aligned_cols=215 Identities=6% Similarity=-0.039 Sum_probs=124.5
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceeccc-ccccccccccCccceeeeeecccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
..+..+.++|||++|+.+.. ...|++||+++++..... +... . +
T Consensus 53 ~~v~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~------~-~----------------------- 97 (372)
T 1k8k_C 53 GQVTGVDWAPDSNRIVTCGT-----DRNAYVWTLKGRTWKPTLVILRI------N-R----------------------- 97 (372)
T ss_dssp SCEEEEEEETTTTEEEEEET-----TSCEEEEEEETTEEEEEEECCCC------S-S-----------------------
T ss_pred CcccEEEEeCCCCEEEEEcC-----CCeEEEEECCCCeeeeeEEeecC------C-C-----------------------
Confidence 45788999999999986542 236999999888643211 1111 0 0
Q ss_pred ceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcE
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDI 290 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~ 290 (789)
....++|+||++.|+....+ ..++++++.+......
T Consensus 98 -------------------------~v~~~~~~~~~~~l~~~~~d-------------------~~v~i~d~~~~~~~~~ 133 (372)
T 1k8k_C 98 -------------------------AARCVRWAPNEKKFAVGSGS-------------------RVISICYFEQENDWWV 133 (372)
T ss_dssp -------------------------CEEEEEECTTSSEEEEEETT-------------------SSEEEEEEETTTTEEE
T ss_pred -------------------------ceeEEEECCCCCEEEEEeCC-------------------CEEEEEEecCCCccee
Confidence 24789999999999877533 2366777665432111
Q ss_pred EEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcc---cccc--cCCCCccEeeeccccc-eeE
Q 003878 291 LCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLE---GFKK--RDGLLPFVKLIDGFDA-QYE 364 (789)
Q Consensus 291 ~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~---~~~~--~~~~~~~~~l~~~~~~-~~~ 364 (789)
.......+...+..+.|+|||++|+....+ ..++++|+........ .... .........+...... ...
T Consensus 134 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 208 (372)
T 1k8k_C 134 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCD-----FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGV 208 (372)
T ss_dssp EEEECTTCCSCEEEEEECTTSSEEEEEETT-----SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEE
T ss_pred eeeeecccCCCeeEEEEcCCCCEEEEEcCC-----CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEE
Confidence 111112223456789999999998876533 3478888643110000 0000 0001111112111111 223
Q ss_pred EEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCC
Q 003878 365 VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN 439 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~t 439 (789)
.|+|+|+.|+..+. ++.|..+|+.+++....+..+ ...+..+.+++++.+++.. .++ .|++|++.+
T Consensus 209 ~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~-~d~--~i~i~~~~~ 274 (372)
T 1k8k_C 209 CFSANGSRVAWVSH----DSTVCLADADKKMAVATLASE--TLPLLAVTFITESSLVAAG-HDC--FPVLFTYDS 274 (372)
T ss_dssp EECSSSSEEEEEET----TTEEEEEEGGGTTEEEEEECS--SCCEEEEEEEETTEEEEEE-TTS--SCEEEEEET
T ss_pred EECCCCCEEEEEeC----CCEEEEEECCCCceeEEEccC--CCCeEEEEEecCCCEEEEE-eCC--eEEEEEccC
Confidence 48999988776553 367999999877633334333 2467888999877777766 565 566777665
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-07 Score=101.53 Aligned_cols=72 Identities=7% Similarity=-0.009 Sum_probs=48.5
Q ss_pred Eec-CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCCCcee
Q 003878 366 IAN-DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSLL 443 (789)
Q Consensus 366 ~s~-dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~tG~~~ 443 (789)
++| ||+.+|+. ..+|+++|+++++ ....++.. .....+++++++ .+++ ...+ ..|.+||+++++.+
T Consensus 262 ~sp~dg~~l~~~------~~~v~~~d~~~~~-~~~~~~~~--~~~~~~~~s~dg~~l~~-~~~~--~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 262 RSPKDPNQIYGV------LNRLAKYDLKQRK-LIKAANLD--HTYYCVAFDKKGDKLYL-GGTF--NDLAVFNPDTLEKV 329 (349)
T ss_dssp ECSSCTTEEEEE------ESEEEEEETTTTE-EEEEEECS--SCCCEEEECSSSSCEEE-ESBS--SEEEEEETTTTEEE
T ss_pred ecCCCCCEEEEE------cCeEEEEECccCe-EEEEEcCC--CCccceEECCCCCEEEE-ecCC--CeEEEEecccccee
Confidence 578 99988875 3589999998876 32333322 234578888754 4555 3333 58999999988876
Q ss_pred eecccC
Q 003878 444 HQLPIE 449 (789)
Q Consensus 444 ~~l~~~ 449 (789)
..++.+
T Consensus 330 ~~~~~~ 335 (349)
T 1jmx_B 330 KNIKLP 335 (349)
T ss_dssp EEEECS
T ss_pred eeeecC
Confidence 666655
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.6e-06 Score=96.76 Aligned_cols=248 Identities=15% Similarity=0.118 Sum_probs=131.7
Q ss_pred ceEEEE----eCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEec-C-CC-----CeeEEEEE
Q 003878 238 SSIAWT----HDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD-P-EH-----PKYIFSGH 306 (789)
Q Consensus 238 ~~~~ws----pDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~-~-~~-----~~~~~~~~ 306 (789)
.++++| |||+++|+.... +.++.+++..+......+-... + +. ...+..+.
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~------------------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~ 304 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYW------------------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAIL 304 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEE------------------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEE
T ss_pred ceeEEccccCCCCCEEEEEEcc------------------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEE
Confidence 578999 799999987432 3456677765543221111110 0 00 11244677
Q ss_pred EecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceE
Q 003878 307 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKI 386 (789)
Q Consensus 307 ~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L 386 (789)
.|+++..+++.... ...|+++|..+.. ......+..+.......|++||+++++..+. ..+|
T Consensus 305 ~s~~~~~~vv~~~~----~g~v~~vd~~~~~-----------~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~---sn~V 366 (567)
T 1qks_A 305 ASHYRPEFIVNVKE----TGKILLVDYTDLN-----------NLKTTEISAERFLHDGGLDGSHRYFITAANA---RNKL 366 (567)
T ss_dssp ECSSSSEEEEEETT----TTEEEEEETTCSS-----------EEEEEEEECCSSEEEEEECTTSCEEEEEEGG---GTEE
T ss_pred EcCCCCEEEEEecC----CCeEEEEecCCCc-----------cceeeeeeccccccCceECCCCCEEEEEeCC---CCeE
Confidence 89998877766522 4679999987631 0011111111111123489999998876653 3579
Q ss_pred EEEECCCCCCeEEeccC-CC-CceeeeEEE-ecCCEEEEEEEeCCeEEEEEEECCCC-------ceeeecccC-CeeEEE
Q 003878 387 IRVDLKEPNDWFEVIPE-AE-RDVLESATA-VNLNQMIVSYLSDVKYVLQIRDLKNG-------SLLHQLPIE-IGSVNA 455 (789)
Q Consensus 387 ~~~dl~~~~~~~~l~~~-~~-~~~i~~v~~-~~~~~lv~~~~~~g~~~L~~~dl~tG-------~~~~~l~~~-~~~v~~ 455 (789)
.++|+++++ ....++- .. ...-.+..+ .++..-++....-+...|.+++.+++ +.++.+... .+.+ .
T Consensus 367 ~ViD~~t~k-l~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~-~ 444 (567)
T 1qks_A 367 VVIDTKEGK-LVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSL-F 444 (567)
T ss_dssp EEEETTTTE-EEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC-C
T ss_pred EEEECCCCc-EEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCE-E
Confidence 999999876 3322322 11 111123333 44334344444434457999998863 344555543 2322 3
Q ss_pred eecccCCcEEEEEEcCCCCC-----cEEEEEECCCC-----CceEEEeeeccCCCCCCCCCcEEEEEEecCCCceEEEEE
Q 003878 456 ISARREDSVVFISFTSFLIP-----GIVYQCNLKTE-----TPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMF 525 (789)
Q Consensus 456 ~s~s~d~~~l~~~~ss~~~P-----~~ly~~dl~tg-----~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~~i~~~ 525 (789)
+..+|+++.+++.. ...| .++..+|..+. +...+.+.-.+..++....-.+.++.| ++|| .++-+.
T Consensus 445 i~~~p~~~~l~v~~--~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~G-~~~~~s 520 (567)
T 1qks_A 445 IKTHPNSQYLYVDA--TLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEF-NKDG-TEVWFS 520 (567)
T ss_dssp EECCTTCSEEEEEC--TTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEE-CTTS-SEEEEE
T ss_pred EEeCCCCCeEEEec--CCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeE-CCCC-CEEEEE
Confidence 55789999888753 2334 48999998765 211133321100112112234555666 4678 777655
Q ss_pred EE
Q 003878 526 IV 527 (789)
Q Consensus 526 l~ 527 (789)
+.
T Consensus 521 ~~ 522 (567)
T 1qks_A 521 VW 522 (567)
T ss_dssp EE
T ss_pred ee
Confidence 44
|
| >3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.5e-09 Score=107.75 Aligned_cols=101 Identities=9% Similarity=-0.002 Sum_probs=67.3
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
+..|.||++||+.+.... |.. +.. |. .|+.|+.+|+||.+. ......+++++.+.+..++..-.
T Consensus 19 ~~~~~lv~lhg~~~~~~~--~~~-~~~-l~-~~~~v~~~d~~G~~~----------~~~~~~~~~~~~~~~~~~i~~~~- 82 (265)
T 3ils_A 19 VARKTLFMLPDGGGSAFS--YAS-LPR-LK-SDTAVVGLNCPYARD----------PENMNCTHGAMIESFCNEIRRRQ- 82 (265)
T ss_dssp TSSEEEEEECCTTCCGGG--GTT-SCC-CS-SSEEEEEEECTTTTC----------GGGCCCCHHHHHHHHHHHHHHHC-
T ss_pred CCCCEEEEECCCCCCHHH--HHH-HHh-cC-CCCEEEEEECCCCCC----------CCCCCCCHHHHHHHHHHHHHHhC-
Confidence 456889999998765443 322 223 55 899999999999531 11122445555544443333211
Q ss_pred CCCcEEEEeeChHHHHHHHHHH---hCCCceeEEEecCCc
Q 003878 616 QSRKLCIEGGSNGGLLVGACIN---QRPDLFGCALAHVGV 652 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~---~~pd~f~a~v~~~p~ 652 (789)
...++.++|||+||.++..++. .+|+.++++|+..+.
T Consensus 83 ~~~~~~l~GhS~Gg~ia~~~a~~l~~~~~~v~~lvl~~~~ 122 (265)
T 3ils_A 83 PRGPYHLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDAP 122 (265)
T ss_dssp SSCCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCC
T ss_pred CCCCEEEEEECHhHHHHHHHHHHHHhCCCCceEEEEEcCC
Confidence 2258999999999999999887 678888888876543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.3e-07 Score=99.40 Aligned_cols=244 Identities=11% Similarity=0.070 Sum_probs=139.7
Q ss_pred CcEEEEeEEeCCC---CcEEEEEEecCCceEEEEEEEEcCC-CceecccccccccccccCccceeeeeeccccccccccc
Q 003878 130 GTAALIKVSVSED---AKYLAYALSYSGSDWATIKLMRIED-QIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLF 205 (789)
Q Consensus 130 ~~~~~~~~~~SpD---g~~la~~~~~~g~~~~~i~v~dl~t-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 205 (789)
+...+..+++||| |++|+.+.. ...|++||+.+ +..+...+.... +
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~h~-------~------------------ 87 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSW-----ANDVRCWEVQDSGQTIPKAQQMHT-------G------------------ 87 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEET-----TSEEEEEEECTTSCEEEEEEEECS-------S------------------
T ss_pred CCCceEEEEEcCCCCCceEEEEECC-----CCcEEEEEcCCCCceeEEEecccc-------C------------------
Confidence 3456889999999 688875432 34799999998 444322222110 0
Q ss_pred cccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCC
Q 003878 206 LYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTK 285 (789)
Q Consensus 206 ~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~ 285 (789)
....++|+||++.|+....+ ..|.+|++.+.
T Consensus 88 ------------------------------~v~~~~~~~~~~~l~s~~~d-------------------g~v~iwd~~~~ 118 (368)
T 3mmy_A 88 ------------------------------PVLDVCWSDDGSKVFTASCD-------------------KTAKMWDLSSN 118 (368)
T ss_dssp ------------------------------CEEEEEECTTSSEEEEEETT-------------------SEEEEEETTTT
T ss_pred ------------------------------CEEEEEECcCCCEEEEEcCC-------------------CcEEEEEcCCC
Confidence 25789999999999866432 36889998765
Q ss_pred CCCcEEEEecCCCCeeEEEEEE--ecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCC--------------
Q 003878 286 QSEDILCWKDPEHPKYIFSGHV--TEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL-------------- 349 (789)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~-------------- 349 (789)
.. ..+.. +...+..+.| +|+|++|+.... ...|+++|+.++..- ..+......
T Consensus 119 ~~--~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 3mmy_A 119 QA--IQIAQ---HDAPVKTIHWIKAPNYSCVMTGSW-----DKTLKFWDTRSSNPM-MVLQLPERCYCADVIYPMAVVAT 187 (368)
T ss_dssp EE--EEEEE---CSSCEEEEEEEECSSCEEEEEEET-----TSEEEEECSSCSSCS-EEEECSSCEEEEEEETTEEEEEE
T ss_pred Cc--eeecc---ccCceEEEEEEeCCCCCEEEEccC-----CCcEEEEECCCCcEE-EEEecCCCceEEEecCCeeEEEe
Confidence 32 22222 2334567888 999998876653 245888888764210 000000000
Q ss_pred --------------CccEeeecc--ccceeEEEecCCCE----EEEEECCCCCCceEEEEECCCCC---CeEEeccCCCC
Q 003878 350 --------------LPFVKLIDG--FDAQYEVIANDDTV----FTFLTNKDAPKYKIIRVDLKEPN---DWFEVIPEAER 406 (789)
Q Consensus 350 --------------~~~~~l~~~--~~~~~~~~s~dG~~----l~~~tn~~~~~~~L~~~dl~~~~---~~~~l~~~~~~ 406 (789)
......... .......+.+++.. ++..+ .++.|..+++.... ....+..+...
T Consensus 188 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 263 (368)
T 3mmy_A 188 AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS----IEGRVAIHYINPPNPAKDNFTFKCHRSN 263 (368)
T ss_dssp GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE----TTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred CCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec----CCCcEEEEecCCCCccccceeeeeeecc
Confidence 000000000 00000001111110 22211 23567777776652 11222222210
Q ss_pred ----------ceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEE
Q 003878 407 ----------DVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISF 469 (789)
Q Consensus 407 ----------~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ 469 (789)
..+..+.+++++.++++...++ .|++||+.+++.+..+......+..+.++++++.++...
T Consensus 264 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s 334 (368)
T 3mmy_A 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG--RFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYAS 334 (368)
T ss_dssp ----CCCEEECCEEEEEECTTTCCEEEEETTS--CEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEE
T ss_pred cccccccccccceEEEEEecCCCEEEEEccCC--eEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEe
Confidence 1478899998777788888887 699999998887677766667788899999998776543
|
| >2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.2e-09 Score=125.31 Aligned_cols=129 Identities=14% Similarity=0.088 Sum_probs=86.7
Q ss_pred cCCCceEEEEEEEec-----CCCCCCCC----ccEEEEEcCCCCccCC---CCCCHHHHHHHHcCCeEEEEEeecCCC-C
Q 003878 515 SKDGSTKIPMFIVSK-----KNIKLDGS----HPCLLYGYGGFNISVT---PSFSVSRTILMRHLGAVFCIANIRGGG-E 581 (789)
Q Consensus 515 s~dg~~~i~~~l~~p-----~~~~~~~~----~P~ll~~hGg~~~~~~---~~~~~~~~~~l~~~G~~v~~~~~RG~g-~ 581 (789)
+.|. +.+.++.| +.. ..++ .|+||++|||...... ..+.. ..+.++|++|+.+|||.+. +
T Consensus 87 ~edc---L~lnv~~P~~~~~~~~-~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~---~~l~~~g~vvv~~nYRl~~~G 159 (551)
T 2fj0_A 87 SEAC---IHANIHVPYYALPRDA-ADKNRFAGLPVLVFIHGGGFAFGSGDSDLHGP---EYLVSKDVIVITFNYRLNVYG 159 (551)
T ss_dssp CSCC---CEEEEEEEGGGCCCC---------CEEEEEEECCSTTTSCCSCTTTCBC---TTGGGGSCEEEEECCCCHHHH
T ss_pred CCCC---eEEEEEecCccccccc-cccCcCCCCCEEEEEcCCccccCCCcccccCH---HHHHhCCeEEEEeCCcCCccc
Confidence 4555 45566677 321 2234 8999999998533222 22332 2344599999999999642 1
Q ss_pred CChhHHhcccccCCcchHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHh--CCCceeEEEecCCcc
Q 003878 582 YGEEWHKGGALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVM 653 (789)
Q Consensus 582 ~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~--~pd~f~a~v~~~p~~ 653 (789)
|... ......+...+.|.+++++|+.++- ..||+||.|+|+|+||.+++.++.. .+.+|+++|+++|..
T Consensus 160 f~~~---~~~~~~~n~gl~D~~~al~wv~~~i~~fggDp~~v~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 233 (551)
T 2fj0_A 160 FLSL---NSTSVPGNAGLRDMVTLLKWVQRNAHFFGGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAILMSGTS 233 (551)
T ss_dssp HCCC---SSSSCCSCHHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCT
T ss_pred cccC---cccCCCCchhHHHHHHHHHHHHHHHHHhCCChhhEEEEEEChHHhhhhccccCchhhhhhhheeeecCCc
Confidence 1110 0011223456899999999998762 2599999999999999999988876 357999999999864
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-07 Score=106.95 Aligned_cols=185 Identities=10% Similarity=0.074 Sum_probs=108.3
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc-----EEEEe--cCCCCeeEEEEEEec
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED-----ILCWK--DPEHPKYIFSGHVTE 309 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~-----~~~~~--~~~~~~~~~~~~~Sp 309 (789)
..+++|||||+.|+....+ .+|.+|++.++.... ...+. ...+...+..++|||
T Consensus 132 v~svafSPDG~~LAsgs~D-------------------GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP 192 (588)
T 2j04_A 132 YHCFEWNPIESSIVVGNED-------------------GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE 192 (588)
T ss_dssp EEEEEECSSSSCEEEEETT-------------------SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET
T ss_pred EEEEEEcCCCCEEEEEcCC-------------------CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC
Confidence 4689999999999976543 368889987653211 11221 123445788999999
Q ss_pred CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-c-ceeEEEecCCCEEEEEECCCCCCceEE
Q 003878 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-D-AQYEVIANDDTVFTFLTNKDAPKYKII 387 (789)
Q Consensus 310 DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~s~dG~~l~~~tn~~~~~~~L~ 387 (789)
|| ++..+. .+.++++++.++.. ...+..+..+. . ..-..|+ |+.++... ...|.
T Consensus 193 dg--Laass~-----D~tVrlWd~~~~~~----------~~~~~tL~~~h~~~V~svaFs--g~~LASa~-----~~tIk 248 (588)
T 2j04_A 193 DV--LVAALS-----NNSVFSMTVSASSH----------QPVSRMIQNASRRKITDLKIV--DYKVVLTC-----PGYVH 248 (588)
T ss_dssp TE--EEEEET-----TCCEEEECCCSSSS----------CCCEEEEECCCSSCCCCEEEE--TTEEEEEC-----SSEEE
T ss_pred Cc--EEEEeC-----CCeEEEEECCCCcc----------ccceeeecccccCcEEEEEEE--CCEEEEEe-----CCeEE
Confidence 99 544432 24588899877420 00112221111 1 1123476 57666432 25899
Q ss_pred EEECCCCCCeEEeccCCCCceeeeEEE--ecCCEEEEEEEeCCeEEEEEE-----ECCCCc-----------------ee
Q 003878 388 RVDLKEPNDWFEVIPEAERDVLESATA--VNLNQMIVSYLSDVKYVLQIR-----DLKNGS-----------------LL 443 (789)
Q Consensus 388 ~~dl~~~~~~~~l~~~~~~~~i~~v~~--~~~~~lv~~~~~~g~~~L~~~-----dl~tG~-----------------~~ 443 (789)
.+++.++. ...+.- +....+.++.+ ++++..+++..++|. +|+.. ..+ +. ..
T Consensus 249 LWd~~~~~-~~~~~~-gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd-~~l~a~~d~~v~lW~~~g~~l 324 (588)
T 2j04_A 249 KIDLKNYS-ISSLKT-GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTAD-NIIAPYLEKKFKKWSTIWNEF 324 (588)
T ss_dssp EEETTTTE-EEEEEC-SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECC-CSSHHHHHHHHHHTTTTTTSS
T ss_pred EEECCCCe-EEEEEc-CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCC-ceEEEEcCCEEEEEECCCCce
Confidence 99998875 322321 23356778899 886778888887876 66653 222 21 11
Q ss_pred eecccCCeeEEEeecccCCcEEEEEE
Q 003878 444 HQLPIEIGSVNAISARREDSVVFISF 469 (789)
Q Consensus 444 ~~l~~~~~~v~~~s~s~d~~~l~~~~ 469 (789)
..+.. ...|.+++++|||..++..+
T Consensus 325 ~~~~~-~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 325 NNYET-TLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp SSSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred eeecc-ceEEEEEEECCCCCEEEEEE
Confidence 11111 33467788899998777544
|
| >1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=108.22 Aligned_cols=206 Identities=10% Similarity=-0.088 Sum_probs=118.9
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHH-HHHHcC
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE-YLISAG 613 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~-~L~~~~ 613 (789)
.+..|.||++||..+......|.. ....+. .+|.|+.+|+||.|... ....+++++.+.+. .+.+.
T Consensus 64 ~~~~~~lvllhG~~~~~~~~~~~~-~~~~l~-~~~~v~~~d~~G~G~s~----------~~~~~~~~~a~~~~~~l~~~- 130 (300)
T 1kez_A 64 GPGEVTVICCAGTAAISGPHEFTR-LAGALR-GIAPVRAVPQPGYEEGE----------PLPSSMAAVAAVQADAVIRT- 130 (300)
T ss_dssp CSCSSEEEECCCSSTTCSTTTTHH-HHHHTS-SSCCBCCCCCTTSSTTC----------CBCSSHHHHHHHHHHHHHHH-
T ss_pred CCCCCeEEEECCCcccCcHHHHHH-HHHhcC-CCceEEEecCCCCCCCC----------CCCCCHHHHHHHHHHHHHHh-
Confidence 356789999999876543344553 345565 67999999999977521 11345666655543 44443
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHhCC---CceeEEEecCCcccccc-ccc-c--cCCccchhhcCCCCcHHHHHH----
Q 003878 614 YTQSRKLCIEGGSNGGLLVGACINQRP---DLFGCALAHVGVMDMLR-YHK-F--TIGHAWVSDFGCSEEEEEFYW---- 682 (789)
Q Consensus 614 ~~d~~~i~i~G~S~GG~l~~~~~~~~p---d~f~a~v~~~p~~d~~~-~~~-~--~~~~~~~~e~g~p~~~~~~~~---- 682 (789)
.+.+++.++|+|+||.++..++.++| ++++++|+..+...... ... + .....+......+........
T Consensus 131 -~~~~~~~LvGhS~GG~vA~~~A~~~p~~g~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (300)
T 1kez_A 131 -QGDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYPPGHQDAMNAWLEELTATLFDRETVRMDDTRLTALGAY 209 (300)
T ss_dssp -CSSCCEEEECCTHHHHHHHHHHHHTTTTTCCCSEEECBTCCCTTTCHHHHHHHHHHHGGGCCCCSSCCCHHHHHHHHHH
T ss_pred -cCCCCEEEEEECHhHHHHHHHHHHHHhcCCCccEEEEECCCCCcchhHHHHHHHHHHHHHHhCcCCccchHHHHHHHHH
Confidence 23468999999999999999999988 48999998877543221 000 0 000000000000111111111
Q ss_pred HHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCC
Q 003878 683 LIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVG 762 (789)
Q Consensus 683 l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~ 762 (789)
+.....+ ....+ ..|+|+++| .|+.+++.+ .. +... .....++.++++ ||...
T Consensus 210 ~~~~~~~-~~~~i----------~~P~lii~G-~d~~~~~~~-~~----~~~~---------~~~~~~~~~i~g-gH~~~ 262 (300)
T 1kez_A 210 DRLTGQW-RPRET----------GLPTLLVSA-GEPMGPWPD-DS----WKPT---------WPFEHDTVAVPG-DHFTM 262 (300)
T ss_dssp HHHTTTC-CCCCC----------SCCBEEEEE-SSCSSCCCS-SC----CSCC---------CSSCCEEEEESS-CTTTS
T ss_pred HHHHhcC-CCCCC----------CCCEEEEEe-CCCCCCCcc-cc----hhhh---------cCCCCeEEEecC-CChhh
Confidence 1111111 12333 679999999 577777654 21 2221 123467888998 99875
Q ss_pred C-chhhHHHHHHHHHHHHHHHh
Q 003878 763 L-PTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 763 ~-~~~~~~~~~~~~~~fl~~~l 783 (789)
. ... ....+.+.+||.+..
T Consensus 263 ~~e~~--~~~~~~i~~fl~~~~ 282 (300)
T 1kez_A 263 VQEHA--DAIARHIDAWLGGGN 282 (300)
T ss_dssp SSSCS--HHHHHHHHHHHTCC-
T ss_pred ccccH--HHHHHHHHHHHHhcc
Confidence 3 322 355667788886543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.84 E-value=4.7e-07 Score=104.60 Aligned_cols=200 Identities=11% Similarity=0.080 Sum_probs=122.5
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...++|+|||+.|+....+. .....|+.++.+. ... ....+...+..+.|+|+|+++++
T Consensus 119 v~~~~~s~~~~~l~~~~~~~---------------~~~~~v~~~d~~~----~~~--~~~~~~~~v~~~~~~~~~~~~l~ 177 (615)
T 1pgu_A 119 ISDISWDFEGRRLCVVGEGR---------------DNFGVFISWDSGN----SLG--EVSGHSQRINACHLKQSRPMRSM 177 (615)
T ss_dssp EEEEEECTTSSEEEEEECCS---------------SCSEEEEETTTCC----EEE--ECCSCSSCEEEEEECSSSSCEEE
T ss_pred EEEEEEeCCCCEEEEeccCC---------------CCccEEEEEECCC----cce--eeecCCccEEEEEECCCCCcEEE
Confidence 57899999999998875432 1123566666321 122 22233445678999999996555
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc---ce-eEEEecC-CCEEEEEECCCCCCceEEEEEC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD---AQ-YEVIAND-DTVFTFLTNKDAPKYKIIRVDL 391 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~---~~-~~~~s~d-G~~l~~~tn~~~~~~~L~~~dl 391 (789)
.... ...|.++|+.++. ....+..... .. ...|+|+ |+.|+..+. ++.|..+|+
T Consensus 178 ~~~~----d~~v~vwd~~~~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~vwd~ 236 (615)
T 1pgu_A 178 TVGD----DGSVVFYQGPPFK-------------FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISCFDG 236 (615)
T ss_dssp EEET----TTEEEEEETTTBE-------------EEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEEEET
T ss_pred EEeC----CCcEEEEeCCCcc-------------eeeeecccCCCCceEEEEEECCCCCCEEEEEeC----CCeEEEEEC
Confidence 5433 3568889987631 1222222211 12 2348999 888776543 357999999
Q ss_pred CCCCCeEEeccC--CCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC----CeeEEEeecccCCcEE
Q 003878 392 KEPNDWFEVIPE--AERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE----IGSVNAISARREDSVV 465 (789)
Q Consensus 392 ~~~~~~~~l~~~--~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~----~~~v~~~s~s~d~~~l 465 (789)
.+++....+... .....+..+.++ ++.++++...++ .|.+||+.+++....+..+ ...+..+.++ +++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 312 (615)
T 1pgu_A 237 KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADA--TIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRI 312 (615)
T ss_dssp TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTS--EEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEE
T ss_pred CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCC--cEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeE
Confidence 887633333120 223567888888 677777787776 7899999888765555543 2334344443 66655
Q ss_pred EEEEcCCCCCcEEEEEECCCC
Q 003878 466 FISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 466 ~~~~ss~~~P~~ly~~dl~tg 486 (789)
+... .-+.++.||+.++
T Consensus 313 ~~~~----~~g~i~~~d~~~~ 329 (615)
T 1pgu_A 313 ISLS----LDGTLNFYELGHD 329 (615)
T ss_dssp EEEE----TTSCEEEEETTEE
T ss_pred EEEE----CCCCEEEEECCCC
Confidence 5433 2467888888765
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-06 Score=91.03 Aligned_cols=238 Identities=6% Similarity=-0.090 Sum_probs=140.4
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccccee
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFF 213 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 213 (789)
..++.|+|||+.|.++-...+ .|+++|.+++ ... +... .+
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~----~i~~~~~~~~-~~~--~~~~----------------------~~----------- 69 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQN----RTWAWSDDGQ-LSP--EMHP----------------------SH----------- 69 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGT----EEEEEETTSC-EEE--EESS----------------------CS-----------
T ss_pred ccCCeEeCCCCEEEEEeCCCC----EEEEEECCCC-eEE--EECC----------------------CC-----------
Confidence 467899999997766554333 7999999987 321 1111 00
Q ss_pred eEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEE
Q 003878 214 FFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCW 293 (789)
Q Consensus 214 ~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~ 293 (789)
...+++++|||+ |+++.. ....|++++..++..+ .+.
T Consensus 70 ----------------------~~~~l~~~~dg~-l~v~~~------------------~~~~i~~~d~~~g~~~--~~~ 106 (296)
T 3e5z_A 70 ----------------------HQNGHCLNKQGH-LIACSH------------------GLRRLERQREPGGEWE--SIA 106 (296)
T ss_dssp ----------------------SEEEEEECTTCC-EEEEET------------------TTTEEEEECSTTCCEE--EEE
T ss_pred ----------------------CcceeeECCCCc-EEEEec------------------CCCeEEEEcCCCCcEE--EEe
Confidence 136789999997 444421 1235788877554321 121
Q ss_pred ecCCCC--eeEEEEEEecCCcEEEEEEEc-C------------CCCceEEEEEECCCCCCCcccccccCCCCccEeeecc
Q 003878 294 KDPEHP--KYIFSGHVTEDGQYLVMCIEE-N------------CDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG 358 (789)
Q Consensus 294 ~~~~~~--~~~~~~~~SpDG~~l~~~~~~-~------------~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~ 358 (789)
...... .....+.++|||+.++ +... + ......||.++.+ +. ...+...
T Consensus 107 ~~~~~~~~~~~~~i~~d~~G~l~v-td~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~--------------~~~~~~~ 170 (296)
T 3e5z_A 107 DSFEGKKLNSPNDVCLAPDGSLWF-SDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT--------------LSAPIRD 170 (296)
T ss_dssp CEETTEECCCCCCEEECTTSCEEE-EECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC--------------EEEEECC
T ss_pred eccCCCCCCCCCCEEECCCCCEEE-ECCccccccccccccccccCCCcEEEEECCC-CC--------------EEEeecC
Confidence 111100 1123578899998544 3210 0 0013478988865 21 1222222
Q ss_pred ccc-eeEEEecCCCEEEEEECCCCCCceEEEEECC-CCCCe---EEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEE
Q 003878 359 FDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLK-EPNDW---FEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQ 433 (789)
Q Consensus 359 ~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~-~~~~~---~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~ 433 (789)
... .-..|+|||+.+ +... ...+|++++++ ++. + ..++ ........++.+.+++.+++.. ++ .|+
T Consensus 171 ~~~~~gi~~s~dg~~l-v~~~---~~~~i~~~~~~~~g~-~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~--~v~ 240 (296)
T 3e5z_A 171 RVKPNGLAFLPSGNLL-VSDT---GDNATHRYCLNARGE-TEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GD--GVH 240 (296)
T ss_dssp CSSEEEEEECTTSCEE-EEET---TTTEEEEEEECSSSC-EEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TT--EEE
T ss_pred CCCCccEEECCCCCEE-EEeC---CCCeEEEEEECCCCc-CcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CC--eEE
Confidence 211 223489999987 5433 24689999886 333 3 3333 2223345678888877777766 33 699
Q ss_pred EEECCCCceeeecccCCeeEEEeec-ccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 434 IRDLKNGSLLHQLPIEIGSVNAISA-RREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 434 ~~dl~tG~~~~~l~~~~~~v~~~s~-s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+|+.+ |+....+..+.+ +..+.+ +++++.|+++.. ..++++++.+++
T Consensus 241 ~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~-----~~l~~~~~~~~~ 288 (296)
T 3e5z_A 241 VLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVS-----TEFWSIETNVRG 288 (296)
T ss_dssp EECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEET-----TEEEEEECSCCB
T ss_pred EECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcC-----CeEEEEEccccc
Confidence 99997 776667766654 555666 578888887654 389999998774
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.2e-07 Score=98.74 Aligned_cols=245 Identities=7% Similarity=-0.043 Sum_probs=140.0
Q ss_pred CcEEEEeEEeCC-CCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccc
Q 003878 130 GTAALIKVSVSE-DAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYL 208 (789)
Q Consensus 130 ~~~~~~~~~~Sp-Dg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (789)
+...+..+.||| |+++|+.+ +.. ..|++||+.++..... ... ..+.+.. .+..+.|++
T Consensus 117 h~~~v~~~~~~~~~~~~l~s~-~~d----~~i~iwd~~~~~~~~~--~~~----~~~~~~v----~~~~~~~~~------ 175 (383)
T 3ei3_B 117 PGDAITGMKFNQFNTNQLFVS-SIR----GATTLRDFSGSVIQVF--AKT----DSWDYWY----CCVDVSVSR------ 175 (383)
T ss_dssp TTCBEEEEEEETTEEEEEEEE-ETT----TEEEEEETTSCEEEEE--ECC----CCSSCCE----EEEEEETTT------
T ss_pred cCCceeEEEeCCCCCCEEEEE-eCC----CEEEEEECCCCceEEE--ecc----CCCCCCe----EEEEECCCC------
Confidence 345688899999 66776643 333 3799999997543221 110 0000001 111223455
Q ss_pred ccceeeEEEeeeccccceeeeeeec---------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEE
Q 003878 209 RGIFFFFYLFSLVKSTIYSFWSVVS---------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYY 279 (789)
Q Consensus 209 ~~~~~~~~~~~s~~~g~~~l~~~~~---------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (789)
.+++++..+|...+|.+.. .-....++|+||++.++++.. ....|++
T Consensus 176 ------~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~------------------~d~~i~i 231 (383)
T 3ei3_B 176 ------QMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSS------------------VDATVKL 231 (383)
T ss_dssp ------TEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEE------------------TTSEEEE
T ss_pred ------CEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEe------------------CCCEEEE
Confidence 3677888889999998643 222467899999994444422 2236889
Q ss_pred EECCCCCCCcEEEEecCCCCeeEEEEEEec-CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee--
Q 003878 280 HFLGTKQSEDILCWKDPEHPKYIFSGHVTE-DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-- 356 (789)
Q Consensus 280 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-- 356 (789)
|++.+.......+... .+...+..+.|+| ||++|+.... ...|.++|+.++... ..+....
T Consensus 232 wd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~-----d~~i~iwd~~~~~~~----------~~~~~~~~~ 295 (383)
T 3ei3_B 232 WDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ-----RNEIRVYSSYDWSKP----------DQIIIHPHR 295 (383)
T ss_dssp EEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES-----SSEEEEEETTBTTSC----------SEEEECCBC
T ss_pred EeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC-----CCcEEEEECCCCccc----------ccccccccc
Confidence 9987643222222211 1234567899999 9999986653 356899999874210 0000000
Q ss_pred --ccccceeEEEecCCCEEEEEEC-----CCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCe
Q 003878 357 --DGFDAQYEVIANDDTVFTFLTN-----KDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVK 429 (789)
Q Consensus 357 --~~~~~~~~~~s~dG~~l~~~tn-----~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~ 429 (789)
.........|+|++..+.+... ..+.++.|..+|+.+++....+..+.....+..+++++++.++++.. ++
T Consensus 296 ~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~- 373 (383)
T 3ei3_B 296 QFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF- 373 (383)
T ss_dssp CCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT-
T ss_pred ccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC-
Confidence 0000011235555554443321 12346789999998877444444333234566678888777777775 65
Q ss_pred EEEEEEECC
Q 003878 430 YVLQIRDLK 438 (789)
Q Consensus 430 ~~L~~~dl~ 438 (789)
.|.+|+++
T Consensus 374 -~i~iw~~~ 381 (383)
T 3ei3_B 374 -NILIWNRE 381 (383)
T ss_dssp -EEEEEECC
T ss_pred -cEEEEecC
Confidence 79999986
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.83 E-value=2e-06 Score=92.69 Aligned_cols=174 Identities=11% Similarity=0.049 Sum_probs=89.8
Q ss_pred EEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCC--CcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCC
Q 003878 303 FSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPE--GLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKD 380 (789)
Q Consensus 303 ~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~ 380 (789)
..+.+||||++|++.... ...+++++++.... +.+.+... ..........+.......|+|||+.+|+....
T Consensus 158 ~~~~~spdg~~l~~~~~~----~~~v~v~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~- 231 (361)
T 3scy_A 158 HCVRITPDGKYLLADDLG----TDQIHKFNINPNANADNKEKFLTK-GTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI- 231 (361)
T ss_dssp EEEEECTTSSEEEEEETT----TTEEEEEEECTTCCTTTCCCCEEE-EEEEEEECCTTCCEEEEEECTTSSEEEEEETT-
T ss_pred eEEEECCCCCEEEEEeCC----CCEEEEEEEcCCCCcccccceeec-ccccceecCCCCCCeEEEEcCCCCEEEEEcCC-
Confidence 468999999999876532 24566666654210 00000000 00001111112222335599999988876543
Q ss_pred CCCceEEEEECCCCCCeEE---eccC-CCCceeeeEEEecCCEEEEEEEeCCeEEEEEEEC--CCCce--eeecccCCee
Q 003878 381 APKYKIIRVDLKEPNDWFE---VIPE-AERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL--KNGSL--LHQLPIEIGS 452 (789)
Q Consensus 381 ~~~~~L~~~dl~~~~~~~~---l~~~-~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl--~tG~~--~~~l~~~~~~ 452 (789)
...|.+++++++. ++. +... ........+.++++++.++....++...|.+|++ ++|+. +..+.. ...
T Consensus 232 --~~~v~v~~~~~g~-~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~ 307 (361)
T 3scy_A 232 --GGTVIAFRYADGM-LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIH 307 (361)
T ss_dssp --TCEEEEEEEETTE-EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSC
T ss_pred --CCeEEEEEecCCc-eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCC
Confidence 3567777776553 222 1111 1112345788988655443343331235666665 45653 122222 223
Q ss_pred EEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 453 VNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 453 v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+..++++||++.++++.. ...--.+|.+|.++++
T Consensus 308 ~~~~~~spdg~~l~~~~~-~~~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 308 PRNFIITPNGKYLLVACR-DTNVIQIFERDQATGL 341 (361)
T ss_dssp CCEEEECTTSCEEEEEET-TTTEEEEEEECTTTCC
T ss_pred CceEEECCCCCEEEEEEC-CCCCEEEEEEECCCCc
Confidence 446788999998776543 2333455667877884
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.2e-06 Score=93.35 Aligned_cols=259 Identities=10% Similarity=0.078 Sum_probs=150.4
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+...+..+.++||+ +|+ +.+. ..+|++||+.+++.+. .+... .+....+..++ .|++
T Consensus 161 h~~~V~~l~~~~~~-~l~-s~s~----dg~i~vwd~~~~~~~~-~~~~h-------~~~v~~l~~~~--~~~~------- 217 (464)
T 3v7d_B 161 HDGGVWALKYAHGG-ILV-SGST----DRTVRVWDIKKGCCTH-VFEGH-------NSTVRCLDIVE--YKNI------- 217 (464)
T ss_dssp CSSCEEEEEECSTT-EEE-EEET----TSCEEEEETTTTEEEE-EECCC-------SSCEEEEEEEE--SSSC-------
T ss_pred CCcCEEEEEEcCCC-EEE-EEeC----CCCEEEEECCCCcEEE-EECCC-------CCccEEEEEec--CCCC-------
Confidence 44567888999999 444 3332 3479999999996543 11111 11011111111 0222
Q ss_pred cceeeEEEeeeccccceeeeeeecc-------------------------------cccceEEEEeCCcEEEEEEccCCC
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVSQ-------------------------------FKFSSIAWTHDSKGFFYSRYPAPK 258 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~~-------------------------------~~~~~~~wspDg~~i~y~~~~~~~ 258 (789)
.+++++..+|+..+|.+... ....-.+++++++.|+....+
T Consensus 218 -----~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d--- 289 (464)
T 3v7d_B 218 -----KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD--- 289 (464)
T ss_dssp -----EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETT---
T ss_pred -----CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCC---
Confidence 56888889999999987541 011223567788877765432
Q ss_pred CCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCC
Q 003878 259 EGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPE 338 (789)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~ 338 (789)
..|+++++.+.. .+..+. .+...+..+.++|||++++..+.+ ..|+++|+.++.
T Consensus 290 ----------------~~i~vwd~~~~~--~~~~~~--~~~~~v~~~~~~~~~~~l~sg~~d-----g~i~vwd~~~~~- 343 (464)
T 3v7d_B 290 ----------------NTLIVWDVAQMK--CLYILS--GHTDRIYSTIYDHERKRCISASMD-----TTIRIWDLENGE- 343 (464)
T ss_dssp ----------------SCEEEEETTTTE--EEEEEC--CCSSCEEEEEEETTTTEEEEEETT-----SCEEEEETTTTE-
T ss_pred ----------------CeEEEEECCCCc--EEEEec--CCCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc-
Confidence 348888887542 222232 234456789999999999876543 448899998742
Q ss_pred CcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCC
Q 003878 339 GLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN 418 (789)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~ 418 (789)
....+..... ....+..+++.|+..+. ++.|..+|+.++.. .....+. ..+..+.+++++
T Consensus 344 ------------~~~~~~~h~~-~v~~~~~~~~~l~s~s~----dg~v~vwd~~~~~~-~~~~~~~--~~~~~~~~~~~~ 403 (464)
T 3v7d_B 344 ------------LMYTLQGHTA-LVGLLRLSDKFLVSAAA----DGSIRGWDANDYSR-KFSYHHT--NLSAITTFYVSD 403 (464)
T ss_dssp ------------EEEEECCCSS-CEEEEEECSSEEEEEET----TSEEEEEETTTCCE-EEEEECT--TCCCEEEEEECS
T ss_pred ------------EEEEEeCCCC-cEEEEEEcCCEEEEEeC----CCcEEEEECCCCce-eeeecCC--CCccEEEEEeCC
Confidence 1222222211 22223334666664433 46799999988762 2222222 334445566656
Q ss_pred EEEEEEEeCCeEEEEEEECCCCceeeeccc-CCeeEEEeecccCCcEEEEEEc
Q 003878 419 QMIVSYLSDVKYVLQIRDLKNGSLLHQLPI-EIGSVNAISARREDSVVFISFT 470 (789)
Q Consensus 419 ~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~-~~~~v~~~s~s~d~~~l~~~~s 470 (789)
.+++... ++ .|.+||+++|+.+..+.. ....+..++++ ++.++++.+
T Consensus 404 ~~l~~~~-dg--~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~ 451 (464)
T 3v7d_B 404 NILVSGS-EN--QFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVE 451 (464)
T ss_dssp SEEEEEE-TT--EEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEE
T ss_pred CEEEEec-CC--eEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEE
Confidence 6666666 55 799999998987654333 35667667764 565665543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.8e-07 Score=102.19 Aligned_cols=246 Identities=10% Similarity=0.058 Sum_probs=142.6
Q ss_pred CcEEEEeEEeCC-CCcEEEEEEecCCceEEEEEEEEcCC---CceecccccccccccccCccceeeeeeccccccccccc
Q 003878 130 GTAALIKVSVSE-DAKYLAYALSYSGSDWATIKLMRIED---QIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLF 205 (789)
Q Consensus 130 ~~~~~~~~~~Sp-Dg~~la~~~~~~g~~~~~i~v~dl~t---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 205 (789)
+...+..+++|| ||++||.+. ...+|+|||+.+ +......+.. .| .+- ..+..+.|++
T Consensus 62 h~~~V~~~~~s~~~~~~l~s~s-----~dg~v~vwd~~~~~~~~~~~~~~~~-----~h-~~~----v~~~~~~~~~--- 123 (437)
T 3gre_A 62 EPNSITSSAVSPGETPYLITGS-----DQGVIKIWNLKEIIVGEVYSSSLTY-----DC-SST----VTQITMIPNF--- 123 (437)
T ss_dssp TTSCEEEEEEECSSSCEEEEEE-----TTSEEEEEEHHHHHTTCCCSCSEEE-----EC-SSC----EEEEEECTTS---
T ss_pred CCCceEEEEECCCCCCEEEEec-----CCceEEEeECcccccCcccceeeec-----cC-CCC----EEEEEEeCCC---
Confidence 345688999999 999998543 345899999987 4311101100 00 010 1112223444
Q ss_pred cccccceeeEEEeeeccccceeeeeeecc-----------cccceEE----------------EEeCCcEEEEEEccCCC
Q 003878 206 LYLRGIFFFFYLFSLVKSTIYSFWSVVSQ-----------FKFSSIA----------------WTHDSKGFFYSRYPAPK 258 (789)
Q Consensus 206 ~~~~~~~~~~~~~~s~~~g~~~l~~~~~~-----------~~~~~~~----------------wspDg~~i~y~~~~~~~ 258 (789)
.+++++..+|...||.+... .....+. |+||++.|+....
T Consensus 124 ---------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 190 (437)
T 3gre_A 124 ---------DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN---- 190 (437)
T ss_dssp ---------SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET----
T ss_pred ---------CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC----
Confidence 46788889999999987410 0111222 5567777766543
Q ss_pred CCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCC
Q 003878 259 EGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPE 338 (789)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~ 338 (789)
...|++|++.+.. .+..+..+.+...+..++|+|||++|+....+ ..|.++|+.++.
T Consensus 191 ---------------d~~i~iwd~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d-----g~i~iwd~~~~~- 247 (437)
T 3gre_A 191 ---------------LSRVIIFDIRTLE--RLQIIENSPRHGAVSSICIDEECCVLILGTTR-----GIIDIWDIRFNV- 247 (437)
T ss_dssp ---------------TSEEEEEETTTCC--EEEEEECCGGGCCEEEEEECTTSCEEEEEETT-----SCEEEEETTTTE-
T ss_pred ---------------CCeEEEEeCCCCe--eeEEEccCCCCCceEEEEECCCCCEEEEEcCC-----CeEEEEEcCCcc-
Confidence 2368999987653 23344432233456789999999999876643 348889988742
Q ss_pred CcccccccCCCCccEeee-cccccee-EEE----ecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCC--------
Q 003878 339 GLEGFKKRDGLLPFVKLI-DGFDAQY-EVI----ANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-------- 404 (789)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~-~~~~~~~-~~~----s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~-------- 404 (789)
+...+. .+..... ..| +++|..|+ ... .++.|..+|+.+++....+..+.
T Consensus 248 ------------~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~-s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 311 (437)
T 3gre_A 248 ------------LIRSWSFGDHAPITHVEVCQFYGKNSVIVV-GGS---SKTFLTIWNFVKGHCQYAFINSDEQPSMEHF 311 (437)
T ss_dssp ------------EEEEEBCTTCEEEEEEEECTTTCTTEEEEE-EES---TTEEEEEEETTTTEEEEEEESSSSCCCGGGG
T ss_pred ------------EEEEEecCCCCceEEEEeccccCCCccEEE-EEc---CCCcEEEEEcCCCcEEEEEEcCCCCCcccee
Confidence 112111 1111111 113 34554444 322 34689999998765223332221
Q ss_pred ----------------CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc
Q 003878 405 ----------------ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI 448 (789)
Q Consensus 405 ----------------~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~ 448 (789)
....+..+.+++ +.++++...++ .|++||+.+++....+..
T Consensus 312 ~~~~~~l~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~ 368 (437)
T 3gre_A 312 LPIEKGLEELNFCGIRSLNALSTISVSN-DKILLTDEATS--SIVMFSLNELSSSKAVIS 368 (437)
T ss_dssp SCBCSSGGGCCCCCCCSGGGGCCEEEET-TEEEEEEGGGT--EEEEEETTCGGGCEEEEC
T ss_pred cccccccccceecccccCCceEEEEECC-ceEEEecCCCC--eEEEEECCCcccceEEec
Confidence 123356678884 78888888777 799999998876555543
|
| >3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.5e-08 Score=105.27 Aligned_cols=208 Identities=7% Similarity=-0.109 Sum_probs=115.3
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHH-HHHHcCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASE-YLISAGY 614 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~-~L~~~~~ 614 (789)
+..|.||++||.........|.. +...|. .||.|+.+|+||.|... ....+++++.+.+. .+.+.
T Consensus 79 ~~~~~lv~lhG~~~~~~~~~~~~-~~~~L~-~~~~v~~~d~~G~G~~~----------~~~~~~~~~~~~~~~~l~~~-- 144 (319)
T 3lcr_A 79 QLGPQLILVCPTVMTTGPQVYSR-LAEELD-AGRRVSALVPPGFHGGQ----------ALPATLTVLVRSLADVVQAE-- 144 (319)
T ss_dssp CSSCEEEEECCSSTTCSGGGGHH-HHHHHC-TTSEEEEEECTTSSTTC----------CEESSHHHHHHHHHHHHHHH--
T ss_pred CCCCeEEEECCCCcCCCHHHHHH-HHHHhC-CCceEEEeeCCCCCCCC----------CCCCCHHHHHHHHHHHHHHh--
Confidence 45689999999422222334443 445565 89999999999977411 11224444433322 22222
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhC---CCceeEEEecCCcccccc--ccc-c--cCCccchh---hcCCCC-cHHHHHH
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQR---PDLFGCALAHVGVMDMLR--YHK-F--TIGHAWVS---DFGCSE-EEEEFYW 682 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~~---pd~f~a~v~~~p~~d~~~--~~~-~--~~~~~~~~---e~g~p~-~~~~~~~ 682 (789)
....++.++|||+||.++..++.+. |+.++++|+..+...... ... . ........ .+.... .......
T Consensus 145 ~~~~~~~lvGhS~Gg~vA~~~A~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 224 (319)
T 3lcr_A 145 VADGEFALAGHSSGGVVAYEVARELEARGLAPRGVVLIDSYSFDGDGGRPEELFRSALNERFVEYLRLTGGGNLSQRITA 224 (319)
T ss_dssp HTTSCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred cCCCCEEEEEECHHHHHHHHHHHHHHhcCCCccEEEEECCCCCCccchhhHHHHHHHHHHHHhhhhcccCCCchhHHHHH
Confidence 1225899999999999999998887 888888887765432211 000 0 00000000 011111 0111111
Q ss_pred HH----hcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCC
Q 003878 683 LI----KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAG 758 (789)
Q Consensus 683 l~----~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~g 758 (789)
+. .+..+ ....+ ..|+|+++|.+ +.+++.....+.+.+.. ...+.++++ |
T Consensus 225 ~~~~~~~~~~~-~~~~i----------~~PvLli~g~~-~~~~~~~~~~~~~~~~~-------------~~~~~~~~g-~ 278 (319)
T 3lcr_A 225 QVWCLELLRGW-RPEGL----------TAPTLYVRPAQ-PLVEQEKPEWRGDVLAA-------------MGQVVEAPG-D 278 (319)
T ss_dssp HHHHHHHTTTC-CCCCC----------SSCEEEEEESS-CSSSCCCTHHHHHHHHT-------------CSEEEEESS-C
T ss_pred HHHHHHHHhcC-CCCCc----------CCCEEEEEeCC-CCCCcccchhhhhcCCC-------------CceEEEeCC-C
Confidence 11 11111 11232 67999999987 67777777777665543 246677765 6
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 759 HGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 759 H~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
|..........+..+.+.+||.+..
T Consensus 279 H~~~~~~~~~~~va~~i~~fL~~~~ 303 (319)
T 3lcr_A 279 HFTIIEGEHVASTAHIVGDWLREAH 303 (319)
T ss_dssp TTGGGSTTTHHHHHHHHHHHHHHHH
T ss_pred cHHhhCcccHHHHHHHHHHHHHhcc
Confidence 6644331123466778889998764
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=8.6e-07 Score=97.84 Aligned_cols=220 Identities=10% Similarity=0.030 Sum_probs=145.8
Q ss_pred EEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCC
Q 003878 215 FYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT 284 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~ 284 (789)
.+++++..+|+..||.+.. .-....++|+|||+.|+....+ ..|.+|++.+
T Consensus 121 ~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D-------------------~~i~iwd~~~ 181 (410)
T 1vyh_C 121 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD-------------------MTIKLWDFQG 181 (410)
T ss_dssp SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETT-------------------SCCCEEETTS
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCC-------------------CeEEEEeCCC
Confidence 4788889999999998654 1123678999999988765443 2367778765
Q ss_pred CCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce-e
Q 003878 285 KQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-Y 363 (789)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 363 (789)
.. .+.....+...+..+.|+|||++|+..+. ...|.++|+.++. ....+....... .
T Consensus 182 ~~----~~~~~~~h~~~V~~v~~~p~~~~l~s~s~-----D~~i~~wd~~~~~-------------~~~~~~~h~~~v~~ 239 (410)
T 1vyh_C 182 FE----CIRTMHGHDHNVSSVSIMPNGDHIVSASR-----DKTIKMWEVQTGY-------------CVKTFTGHREWVRM 239 (410)
T ss_dssp SC----EEECCCCCSSCEEEEEECSSSSEEEEEET-----TSEEEEEETTTCC-------------EEEEEECCSSCEEE
T ss_pred Cc----eeEEEcCCCCCEEEEEEeCCCCEEEEEeC-----CCeEEEEECCCCc-------------EEEEEeCCCccEEE
Confidence 32 22222233445678999999999876553 3558999998742 122222221111 2
Q ss_pred EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecC--------------------CEEEEE
Q 003878 364 EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL--------------------NQMIVS 423 (789)
Q Consensus 364 ~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~--------------------~~lv~~ 423 (789)
..++++|+.|+..+. +..|..+|+.+++....+..+. ..+..+.+.++ +.++++
T Consensus 240 ~~~~~~g~~l~s~s~----D~~v~vwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s 313 (410)
T 1vyh_C 240 VRPNQDGTLIASCSN----DQTVRVWVVATKECKAELREHR--HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 313 (410)
T ss_dssp EEECTTSSEEEEEET----TSCEEEEETTTCCEEEEECCCS--SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred EEECCCCCEEEEEcC----CCeEEEEECCCCceeeEecCCC--ceEEEEEEcCcccccchhhhccccccccCCCCCEEEE
Confidence 337888887765443 3568889998776233343333 45777777763 346777
Q ss_pred EEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 424 YLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 424 ~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
...++ .|++||+.+|+....+..+...+..+.+++++..++-. + .-..++.||+.+++
T Consensus 314 gs~D~--~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~-s---~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 314 GSRDK--TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC-A---DDKTLRVWDYKNKR 371 (410)
T ss_dssp EETTS--EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEE-E---TTTEEEEECCTTSC
T ss_pred EeCCC--eEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEE-e---CCCeEEEEECCCCc
Confidence 88887 79999999888766666556678888999998866532 2 34689999988775
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=9e-08 Score=106.53 Aligned_cols=206 Identities=7% Similarity=-0.052 Sum_probs=116.3
Q ss_pred cceEEEEe-CCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 237 FSSIAWTH-DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 237 ~~~~~wsp-Dg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
+..++|+| |++.|+-... ...|.+|++.+... ..+.........+..+.++|||++|+
T Consensus 167 V~~l~f~p~~~~~l~s~s~-------------------D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (435)
T 4e54_B 167 ITGLKFNPLNTNQFYASSM-------------------EGTTRLQDFKGNIL--RVFASSDTINIWFCSLDVSASSRMVV 225 (435)
T ss_dssp CCEEEECSSCTTEEEEECS-------------------SSCEEEEETTSCEE--EEEECCSSCSCCCCCEEEETTTTEEE
T ss_pred EEEEEEeCCCCCEEEEEeC-------------------CCEEEEeeccCCce--eEEeccCCCCccEEEEEECCCCCEEE
Confidence 57899998 5666664322 23488888865321 12222222233345788999999988
Q ss_pred EEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCCEEEEEECCCCCCceEEEEECCCC
Q 003878 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 394 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~ 394 (789)
.... ...|+++|+.+.. ...+........ ..|+|+++.+++.... +..|..+|+...
T Consensus 226 ~g~~-----dg~i~~wd~~~~~--------------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~---d~~v~iwd~~~~ 283 (435)
T 4e54_B 226 TGDN-----VGNVILLNMDGKE--------------LWNLRMHKKKVTHVALNPCCDWFLATASV---DQTVKIWDLRQV 283 (435)
T ss_dssp EECS-----SSBEEEEESSSCB--------------CCCSBCCSSCEEEEEECTTCSSEEEEEET---TSBCCEEETTTC
T ss_pred EEeC-----CCcEeeeccCcce--------------eEEEecccceEEeeeecCCCceEEEEecC---cceeeEEecccc
Confidence 6543 2448889987531 111111111122 3488988766655433 346777888765
Q ss_pred CCeEEecc-CCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCC------eeEEEeecccCCcEEEE
Q 003878 395 NDWFEVIP-EAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEI------GSVNAISARREDSVVFI 467 (789)
Q Consensus 395 ~~~~~l~~-~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~------~~v~~~s~s~d~~~l~~ 467 (789)
.....+.. ......+..+.+++++..+++...++ .|++||+.+++....+.... .......+++++..+.+
T Consensus 284 ~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (435)
T 4e54_B 284 RGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS--EIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVV 361 (435)
T ss_dssp CSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS--CEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEE
T ss_pred cccceEEEeeeccccccceeECCCCCeeEEEcCCC--EEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEE
Confidence 41112211 11124577888888777788888887 68899998776533332210 01111234555555544
Q ss_pred EEcC--------CCCCcEEEEEECCCCC
Q 003878 468 SFTS--------FLIPGIVYQCNLKTET 487 (789)
Q Consensus 468 ~~ss--------~~~P~~ly~~dl~tg~ 487 (789)
..+. ......+..||..+++
T Consensus 362 ~~~~d~~~~~~~~~~~~~i~iwd~~~g~ 389 (435)
T 4e54_B 362 GRYPDPNFKSCTPYELRTIDVFDGNSGK 389 (435)
T ss_dssp ECCCCTTSCCSSTTCCCCEEEECSSSCC
T ss_pred EEcCCCCeEEEEecCCCEEEEEECCCCc
Confidence 3321 1233468889988885
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.80 E-value=2.6e-06 Score=89.57 Aligned_cols=220 Identities=15% Similarity=0.137 Sum_probs=139.3
Q ss_pred EEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCC
Q 003878 215 FYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT 284 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~ 284 (789)
.+++++..+|...||.... ......++|+|||+.|+....+ ..|.+|++.+
T Consensus 36 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-------------------~~i~vwd~~~ 96 (312)
T 4ery_A 36 EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDD-------------------KTLKIWDVSS 96 (312)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT-------------------SEEEEEETTT
T ss_pred CEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCC-------------------CEEEEEECCC
Confidence 3677888999999997643 2224678999999998876432 3588899876
Q ss_pred CCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce-e
Q 003878 285 KQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-Y 363 (789)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 363 (789)
... +..+.. +...+..+.|+|++++|+....+ ..|.++|+.++. ....+....... .
T Consensus 97 ~~~--~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~~~-------------~~~~~~~~~~~v~~ 154 (312)
T 4ery_A 97 GKC--LKTLKG--HSNYVFCCNFNPQSNLIVSGSFD-----ESVRIWDVKTGK-------------CLKTLPAHSDPVSA 154 (312)
T ss_dssp CCE--EEEEEC--CSSCEEEEEECSSSSEEEEEETT-----SCEEEEETTTCC-------------EEEEECCCSSCEEE
T ss_pred CcE--EEEEcC--CCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCE-------------EEEEecCCCCcEEE
Confidence 532 223333 23446678999999998876543 348899998742 122222211112 2
Q ss_pred EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCcee
Q 003878 364 EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLL 443 (789)
Q Consensus 364 ~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~ 443 (789)
..|+++|+.|+..+. ++.|..+|+.+++....+.... ...+..+.+++++..++....++ .|++||+.+++..
T Consensus 155 ~~~~~~~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~--~i~iwd~~~~~~~ 227 (312)
T 4ery_A 155 VHFNRDGSLIVSSSY----DGLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDN--TLKLWDYSKGKCL 227 (312)
T ss_dssp EEECTTSSEEEEEET----TSCEEEEETTTCCEEEEECCSS-CCCEEEEEECTTSSEEEEEETTT--EEEEEETTTTEEE
T ss_pred EEEcCCCCEEEEEeC----CCcEEEEECCCCceeeEEeccC-CCceEEEEECCCCCEEEEEcCCC--eEEEEECCCCcEE
Confidence 348899987775443 3578999998876333443332 34577788888777777777776 7899999888765
Q ss_pred eecccCCe---eEEEeecc-cCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 444 HQLPIEIG---SVNAISAR-REDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 444 ~~l~~~~~---~v~~~s~s-~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
..+..+.. .+. ..++ +++.. +++. ..-+.++.||+.+++
T Consensus 228 ~~~~~~~~~~~~~~-~~~~~~~~~~-l~sg---~~dg~i~vwd~~~~~ 270 (312)
T 4ery_A 228 KTYTGHKNEKYCIF-ANFSVTGGKW-IVSG---SEDNLVYIWNLQTKE 270 (312)
T ss_dssp EEECSSCCSSSCCC-EEEECSSSCE-EEEC---CTTSCEEEEETTTCC
T ss_pred EEEEecCCceEEEE-EEEEeCCCcE-EEEE---CCCCEEEEEECCCch
Confidence 55543311 111 1222 34443 3332 345689999998875
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.79 E-value=3e-07 Score=97.59 Aligned_cols=236 Identities=13% Similarity=0.041 Sum_probs=135.8
Q ss_pred cEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccc
Q 003878 131 TAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRG 210 (789)
Q Consensus 131 ~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 210 (789)
...+..+.+||||++|+-+. ....|++|+...+.......... .........|.+
T Consensus 86 ~~~V~~~~~s~dg~~l~s~~-----~d~~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~-------- 140 (340)
T 4aow_A 86 SHFVSDVVISSDGQFALSGS-----WDGTLRLWDLTTGTTTRRFVGHT------------KDVLSVAFSSDN-------- 140 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEE-----TTSEEEEEETTTTEEEEEEECCS------------SCEEEEEECTTS--------
T ss_pred CCCEEEEEECCCCCEEEEEc-----ccccceEEeecccceeeeecCCC------------CceeEEEEeecC--------
Confidence 34578899999999998433 23479999998885433111110 000111122333
Q ss_pred ceeeEEEeeeccccceeeeeeec-----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEE
Q 003878 211 IFFFFYLFSLVKSTIYSFWSVVS-----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYY 279 (789)
Q Consensus 211 ~~~~~~~~~s~~~g~~~l~~~~~-----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (789)
..++++..+|...+|.+.. .-....++|++++...++... .....|++
T Consensus 141 ----~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~-----------------~~d~~i~i 199 (340)
T 4aow_A 141 ----RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC-----------------GWDKLVKV 199 (340)
T ss_dssp ----SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEE-----------------ETTSCEEE
T ss_pred ----ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEE-----------------cCCCEEEE
Confidence 3466777888888887543 111245677777654333221 12234788
Q ss_pred EECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc
Q 003878 280 HFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF 359 (789)
Q Consensus 280 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~ 359 (789)
+++.+... ...+. .+...+..++|+|||++|+.... ...|.++|+.+.. +...+....
T Consensus 200 ~d~~~~~~--~~~~~--~h~~~v~~~~~s~~~~~l~s~s~-----Dg~i~iwd~~~~~-------------~~~~~~~~~ 257 (340)
T 4aow_A 200 WNLANCKL--KTNHI--GHTGYLNTVTVSPDGSLCASGGK-----DGQAMLWDLNEGK-------------HLYTLDGGD 257 (340)
T ss_dssp EETTTTEE--EEEEC--CCSSCEEEEEECTTSSEEEEEET-----TCEEEEEETTTTE-------------EEEEEECSS
T ss_pred EECCCCce--eeEec--CCCCcEEEEEECCCCCEEEEEeC-----CCeEEEEEeccCc-------------eeeeecCCc
Confidence 88875421 22222 33445678999999999886553 3568889988731 122222221
Q ss_pred cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEecc-------CCCCceeeeEEEecCCEEEEEEEeCCeEEE
Q 003878 360 DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP-------EAERDVLESATAVNLNQMIVSYLSDVKYVL 432 (789)
Q Consensus 360 ~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~-------~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L 432 (789)
......++|++..+.. + .+..|..+|++++.....+-. ......+..+++++++.++++...|+ .|
T Consensus 258 ~v~~~~~~~~~~~~~~-~----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg--~v 330 (340)
T 4aow_A 258 IINALCFSPNRYWLCA-A----TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDN--LV 330 (340)
T ss_dssp CEEEEEECSSSSEEEE-E----ETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTS--CE
T ss_pred eEEeeecCCCCceeec-c----CCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCC--EE
Confidence 1122347787664442 2 235788889876531111111 11224577899998777888888887 68
Q ss_pred EEEECCCCc
Q 003878 433 QIRDLKNGS 441 (789)
Q Consensus 433 ~~~dl~tG~ 441 (789)
++|++++|+
T Consensus 331 ~iW~~~tGt 339 (340)
T 4aow_A 331 RVWQVTIGT 339 (340)
T ss_dssp EEEEEEC--
T ss_pred EEEeCCCcC
Confidence 899998885
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=5.7e-06 Score=88.18 Aligned_cols=230 Identities=11% Similarity=0.052 Sum_probs=137.6
Q ss_pred EeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceee
Q 003878 135 IKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFF 214 (789)
Q Consensus 135 ~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 214 (789)
.++.|+||++.|.++-..++ .|+++|.++++........
T Consensus 52 egp~~~~~~~~l~~~d~~~~----~i~~~d~~~~~~~~~~~~~------------------------------------- 90 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILER----ELHELHLASGRKTVHALPF------------------------------------- 90 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGT----EEEEEETTTTEEEEEECSS-------------------------------------
T ss_pred cCCeEeCCCCEEEEEECCCC----EEEEEECCCCcEEEEECCC-------------------------------------
Confidence 57889999888877643333 7999999988543211111
Q ss_pred EEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEe
Q 003878 215 FYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK 294 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~ 294 (789)
....++|+|||+.++.. . ..|++++..++.. ..+..
T Consensus 91 ---------------------~v~~i~~~~dg~l~v~~-~--------------------~gl~~~d~~~g~~--~~~~~ 126 (326)
T 2ghs_A 91 ---------------------MGSALAKISDSKQLIAS-D--------------------DGLFLRDTATGVL--TLHAE 126 (326)
T ss_dssp ---------------------CEEEEEEEETTEEEEEE-T--------------------TEEEEEETTTCCE--EEEEC
T ss_pred ---------------------cceEEEEeCCCeEEEEE-C--------------------CCEEEEECCCCcE--EEEee
Confidence 14678999999755532 1 1388888765432 12222
Q ss_pred cCC--CCeeEEEEEEecCCcEEEEEEEcC--CCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEecC
Q 003878 295 DPE--HPKYIFSGHVTEDGQYLVMCIEEN--CDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIAND 369 (789)
Q Consensus 295 ~~~--~~~~~~~~~~SpDG~~l~~~~~~~--~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~d 369 (789)
... .......+.++|||+. ++..... ......||.++ + +. ...+..... .....|++|
T Consensus 127 ~~~~~~~~~~~~i~~d~~G~l-~v~~~~~~~~~~~~~l~~~~-~-g~--------------~~~~~~~~~~~~~i~~s~d 189 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHPSGAL-WIGTMGRKAETGAGSIYHVA-K-GK--------------VTKLFADISIPNSICFSPD 189 (326)
T ss_dssp SSTTCTTEEEEEEEECTTSCE-EEEEEETTCCTTCEEEEEEE-T-TE--------------EEEEEEEESSEEEEEECTT
T ss_pred CCCCCCCCCCCCEEECCCCCE-EEEeCCCcCCCCceEEEEEe-C-Cc--------------EEEeeCCCcccCCeEEcCC
Confidence 211 1234567899999984 4443321 11246799998 3 31 112222111 122358999
Q ss_pred CCEEEEEECCCCCCceEEEEECC--CC-C--CeEEecc-CCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCcee
Q 003878 370 DTVFTFLTNKDAPKYKIIRVDLK--EP-N--DWFEVIP-EAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLL 443 (789)
Q Consensus 370 G~~l~~~tn~~~~~~~L~~~dl~--~~-~--~~~~l~~-~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~ 443 (789)
|+.+|+.... ..+|++++++ ++ . ..+.+.. ........++.+.+++.+++....++ .|++++++ |+..
T Consensus 190 g~~lyv~~~~---~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~--~v~~~d~~-g~~~ 263 (326)
T 2ghs_A 190 GTTGYFVDTK---VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG--AVDRYDTD-GNHI 263 (326)
T ss_dssp SCEEEEEETT---TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT--EEEEECTT-CCEE
T ss_pred CCEEEEEECC---CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCC--EEEEECCC-CCEE
Confidence 9999886543 3689999975 44 2 1122211 11123456788877677777665444 79999985 7766
Q ss_pred eecccCCeeEEEeecc-cCCcEEEEEEcCC
Q 003878 444 HQLPIEIGSVNAISAR-REDSVVFISFTSF 472 (789)
Q Consensus 444 ~~l~~~~~~v~~~s~s-~d~~~l~~~~ss~ 472 (789)
+.+..+...+..++++ ++++.++++....
T Consensus 264 ~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 264 ARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred EEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 6777765557777877 7888888876543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.5e-06 Score=92.91 Aligned_cols=73 Identities=8% Similarity=0.042 Sum_probs=49.4
Q ss_pred EEEecC-CEEEEEEEeC-------CeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEEC
Q 003878 412 ATAVNL-NQMIVSYLSD-------VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 412 v~~~~~-~~lv~~~~~~-------g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl 483 (789)
+.++++ +++|+..... ....|+++|+++++.++.|+.+. ...++.+++|++.++++.+. .-..+..+|+
T Consensus 272 ~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~--~~~~V~ViD~ 348 (373)
T 2mad_H 272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSA--GTEVLHIYDA 348 (373)
T ss_pred EEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECCCCCeEEEEEcC--CCCeEEEEEC
Confidence 455554 5566654321 23489999999888877886653 24467889999955555432 2379999999
Q ss_pred CCCC
Q 003878 484 KTET 487 (789)
Q Consensus 484 ~tg~ 487 (789)
++++
T Consensus 349 ~t~~ 352 (373)
T 2mad_H 349 GAGD 352 (373)
T ss_pred CCCC
Confidence 9885
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.78 E-value=6.9e-07 Score=97.21 Aligned_cols=245 Identities=11% Similarity=0.001 Sum_probs=143.9
Q ss_pred EEEEeEEeCCC----C---cEEEEEEecCCceEEEEEEEEcCCCce-----ecccccccccccccC--ccceeeeeeccc
Q 003878 132 AALIKVSVSED----A---KYLAYALSYSGSDWATIKLMRIEDQIV-----EADALSWVCFCFSHS--FGYFFHLTISLL 197 (789)
Q Consensus 132 ~~~~~~~~SpD----g---~~la~~~~~~g~~~~~i~v~dl~tg~~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 197 (789)
..+..+.++|| | ++|+.+.. . ..|++||+.+++. +. .+... ..+ .+....+..++.
T Consensus 63 ~~v~~~~~~~~~~~~g~~~~~l~s~~~-d----g~i~iw~~~~~~~~~~~~~~-~~~~~----~~~~~~~~v~~~~~~~~ 132 (397)
T 1sq9_A 63 SGLHHVDVLQAIERDAFELCLVATTSF-S----GDLLFYRITREDETKKVIFE-KLDLL----DSDMKKHSFWALKWGAS 132 (397)
T ss_dssp TCEEEEEEEEEEETTTEEEEEEEEEET-T----SCEEEEEEEECTTTCCEEEE-EECCS----CTTGGGSCEEEEEEECC
T ss_pred CcEEEEEEecccccCCccccEEEEEcC-C----CCEEEEEccCCcccccccce-eeccc----ccccCCCcEEEEEEeec
Confidence 34788899999 9 88875433 2 3699999998864 21 11110 000 011111221111
Q ss_pred cccccccccccccceeeEE-Eeeeccccceeeeeeec----------------cc------------ccceEEEEeCCcE
Q 003878 198 NVPTYKLFLYLRGIFFFFY-LFSLVKSTIYSFWSVVS----------------QF------------KFSSIAWTHDSKG 248 (789)
Q Consensus 198 ~~p~~~~~~~~~~~~~~~~-~~~s~~~g~~~l~~~~~----------------~~------------~~~~~~wspDg~~ 248 (789)
..|++ .. ++++..+|...+|.+.. .+ ....++|+||+ .
T Consensus 133 ~~~~~------------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 199 (397)
T 1sq9_A 133 NDRLL------------SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L 199 (397)
T ss_dssp C----------------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E
T ss_pred cCCCC------------ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e
Confidence 11444 35 77778889888987764 11 13568999999 5
Q ss_pred EEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEec-CCC---CeeEEEEEEecCCcEEEEEEEcCCCC
Q 003878 249 FFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD-PEH---PKYIFSGHVTEDGQYLVMCIEENCDP 324 (789)
Q Consensus 249 i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~-~~~---~~~~~~~~~SpDG~~l~~~~~~~~~~ 324 (789)
|+... ....|+++++.+.. .+..+.. ..+ ...+..+.|+|||++|+....++.
T Consensus 200 l~~~~-------------------~dg~i~i~d~~~~~--~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~-- 256 (397)
T 1sq9_A 200 IATGF-------------------NNGTVQISELSTLR--PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNS-- 256 (397)
T ss_dssp EEEEC-------------------TTSEEEEEETTTTE--EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETT--
T ss_pred EEEEe-------------------CCCcEEEEECCCCc--eeEEEeccccccccCCccceEEECCCCCEEEEEecCCC--
Confidence 55442 23458889987642 2233333 002 334678999999999987764311
Q ss_pred ceEEEEEECCCCCCCcccccccCCCCccEeeec-------------cccc-eeEEEecCCCEEEEEECCCCCCceEEEEE
Q 003878 325 VNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-------------GFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVD 390 (789)
Q Consensus 325 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-------------~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~d 390 (789)
...|.++|+.++. +...+.. .... ....|+|+|+.|+..+. ++.|..+|
T Consensus 257 ~g~i~i~d~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd 319 (397)
T 1sq9_A 257 FGCITLYETEFGE-------------RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW----DGKLRFWD 319 (397)
T ss_dssp EEEEEEEETTTCC-------------EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET----TSEEEEEE
T ss_pred CceEEEEECCCCc-------------ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC----CCeEEEEE
Confidence 2569999998742 1112211 1111 12348999998776543 46899999
Q ss_pred CCCCCCeEEec------cCC-------------CCceeeeEEEecCC----------EEEEEEEeCCeEEEEEEECCCCc
Q 003878 391 LKEPNDWFEVI------PEA-------------ERDVLESATAVNLN----------QMIVSYLSDVKYVLQIRDLKNGS 441 (789)
Q Consensus 391 l~~~~~~~~l~------~~~-------------~~~~i~~v~~~~~~----------~lv~~~~~~g~~~L~~~dl~tG~ 441 (789)
+.+++....+. .+. ....+..+.+++++ .++++...++ .|.+|++++|+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg--~i~iw~~~~g~ 397 (397)
T 1sq9_A 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR--SIRWFREAGGK 397 (397)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT--EEEEEEEEC--
T ss_pred cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC--cEEEEEcCCCC
Confidence 98876333333 220 03568899999854 6888888887 68888887663
|
| >2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A | Back alignment and structure |
|---|
Probab=98.78 E-value=4.4e-09 Score=120.84 Aligned_cols=134 Identities=17% Similarity=0.156 Sum_probs=87.8
Q ss_pred EecCCCceEEEEEEEecCCCC-CCCCccEEEEEcCCCCccCCCC---C----CHHHHHHHHcCCeEEEEEeecCCC-CCC
Q 003878 513 VPSKDGSTKIPMFIVSKKNIK-LDGSHPCLLYGYGGFNISVTPS---F----SVSRTILMRHLGAVFCIANIRGGG-EYG 583 (789)
Q Consensus 513 ~~s~dg~~~i~~~l~~p~~~~-~~~~~P~ll~~hGg~~~~~~~~---~----~~~~~~~l~~~G~~v~~~~~RG~g-~~g 583 (789)
+.+.|. .. +-++.|+... .+++.|+||++|||........ + ......+..+.|++|+.+|||.+. +|.
T Consensus 75 ~~sedc-l~--lnv~~P~~~~~~~~~~PV~v~iHGGg~~~Gs~~~~~~~~~~~~~~~~la~~~~vvvV~~nYRLg~~Gfl 151 (579)
T 2bce_A 75 YGNEDC-LY--LNIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFL 151 (579)
T ss_dssp ESCSCC-CE--EEEEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHC
T ss_pred CCCCCC-CE--EEEEECCCCCCCCCCCeEEEEECCCcccCCCCCccccccccccChHHHhcCCCEEEEEeCCccccccCC
Confidence 345666 44 4566787543 3467899999999953322211 1 111123444457999999999542 121
Q ss_pred hhHHhcccccCCcchHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHh--CCCceeEEEecCCc
Q 003878 584 EEWHKGGALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGV 652 (789)
Q Consensus 584 ~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~--~pd~f~a~v~~~p~ 652 (789)
.. ......+...+.|.++|++|+.++- -.||+||.|+|+|+||.++..++.. ...+|+++|+++|.
T Consensus 152 ~~---~~~~~pgn~gl~D~~~Al~wv~~ni~~fGgDp~~Vti~G~SAGg~~~~~~~~~~~~~~lf~~ai~~Sg~ 222 (579)
T 2bce_A 152 ST---GDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV 222 (579)
T ss_dssp CC---SSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred cC---CCCCCCCccchHHHHHHHHHHHHHHHHhCCCcccEEEecccccchheeccccCcchhhHHHHHHHhcCC
Confidence 11 0001112235899999999998752 3699999999999999999888765 35699999998874
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-06 Score=93.87 Aligned_cols=234 Identities=8% Similarity=0.016 Sum_probs=147.2
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..+..++|||||++||.+.+ . .+++||+.+++.+... ...
T Consensus 20 ~~V~~v~fs~dg~~la~g~~-----~-~~~iw~~~~~~~~~~~-~~~--------------------------------- 59 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILSTL-----K-SFEIYNVHPVAHIMSQ-EMR--------------------------------- 59 (355)
T ss_dssp CCCCEEEECTTSSEEEEECS-----S-EEEEEEETTEEEEEEE-ECS---------------------------------
T ss_pred CceEEEEECCCCCEEEEEcC-----C-EEEEEecCCcceeeee-ecC---------------------------------
Confidence 34678899999999985432 1 3679998877543211 000
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
....++|+++++.++++.. ....|.+|++.++.. +.
T Consensus 60 ------------------------~~~~~~~~~~~~~~~~~~~------------------~d~~v~iWd~~~~~~--~~ 95 (355)
T 3vu4_A 60 ------------------------HLSKVRMLHRTNYVAFVTG------------------VKEVVHIWDDVKKQD--VS 95 (355)
T ss_dssp ------------------------CCCEEEECTTSSEEEEECS------------------STTEEEEEETTTTEE--EE
T ss_pred ------------------------CeEEEEEcCCCCEEEEEEC------------------CccEEEEEECCCCcE--EE
Confidence 1366788999988877632 224799999876532 22
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCC
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDT 371 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~ 371 (789)
.+.. ...+..+.+++++ +++.. ...++++|+.+++.. +..+.. ......+++ .
T Consensus 96 ~~~~---~~~v~~v~~~~~~--~~~~~------~~~i~i~d~~~~~~~------------~~~~~~--~~~~~~~s~--~ 148 (355)
T 3vu4_A 96 RIKV---DAPVKDLFLSREF--IVVSY------GDVISVFKFGNPWKR------------ITDDIR--FGGVCEFSN--G 148 (355)
T ss_dssp EEEC---SSCEEEEEECSSE--EEEEE------TTEEEEEESSTTCCB------------SSCCEE--EEEEEEEET--T
T ss_pred EEEC---CCceEEEEEcCCE--EEEEE------cCEEEEEECCCCcee------------eEEecc--CCceEEEEc--c
Confidence 2332 2235677888765 33332 245899999874111 111111 112233565 5
Q ss_pred EEEEEECCCCCCceEEEEECCCCCC----------------eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEE-EEE
Q 003878 372 VFTFLTNKDAPKYKIIRVDLKEPND----------------WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYV-LQI 434 (789)
Q Consensus 372 ~l~~~tn~~~~~~~L~~~dl~~~~~----------------~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~-L~~ 434 (789)
.+++.+.. .++.|..+|+.++.. ...+..+. ..+..+++++++.++++...++ . |.+
T Consensus 149 ~la~~sg~--~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~--~~v~~~~~s~~g~~l~s~s~d~--~~v~i 222 (355)
T 3vu4_A 149 LLVYSNEF--NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT--NPIKMVRLNRKSDMVATCSQDG--TIIRV 222 (355)
T ss_dssp EEEEEESS--CTTCEEEEECCC------------------CCEEECCCS--SCEEEEEECTTSSEEEEEETTC--SEEEE
T ss_pred EEEEeCCC--cCcEEEEEECCCCCccccccccccccccCcccEEEEccC--CceEEEEECCCCCEEEEEeCCC--CEEEE
Confidence 66665332 346788889876430 23343343 5688999999788888888887 5 889
Q ss_pred EECCCCceeeecc-c-CCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 435 RDLKNGSLLHQLP-I-EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 435 ~dl~tG~~~~~l~-~-~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
||+.+|+.+..+. . ..+.+..++++|+++.++.... -.++..||+..+
T Consensus 223 wd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~----d~~v~iw~~~~~ 272 (355)
T 3vu4_A 223 FKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD----KWTLHVFEIFND 272 (355)
T ss_dssp EETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET----TCEEEEEESSCC
T ss_pred EECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC----CCEEEEEEccCC
Confidence 9999888767776 2 4567888999999987664332 368999998765
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.78 E-value=5.8e-06 Score=87.83 Aligned_cols=211 Identities=11% Similarity=0.059 Sum_probs=120.2
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+++|+|||+. ++..... ......|++++..+.... .+............+.++|||+.++
T Consensus 89 ~~~i~~~~dg~l-~v~~~~~--------------~~~~~~i~~~d~~~~~~~--~~~~~~~~~~~~~~i~~d~~g~l~v- 150 (333)
T 2dg1_A 89 PAAIKIHKDGRL-FVCYLGD--------------FKSTGGIFAATENGDNLQ--DIIEDLSTAYCIDDMVFDSKGGFYF- 150 (333)
T ss_dssp EEEEEECTTSCE-EEEECTT--------------SSSCCEEEEECTTSCSCE--EEECSSSSCCCEEEEEECTTSCEEE-
T ss_pred cceEEECCCCcE-EEEeCCC--------------CCCCceEEEEeCCCCEEE--EEEccCccCCcccceEECCCCCEEE-
Confidence 467899999974 4443211 011246888887654322 1222111123356789999997544
Q ss_pred EEEcC--CCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCC
Q 003878 317 CIEEN--CDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE 393 (789)
Q Consensus 317 ~~~~~--~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~ 393 (789)
..... ......||.++.+++. ...+..... .....|++||+.+|+.... +..|+++++++
T Consensus 151 ~~~~~~~~~~~~~l~~~~~~~~~--------------~~~~~~~~~~~~~i~~~~dg~~l~v~~~~---~~~i~~~d~~~ 213 (333)
T 2dg1_A 151 TDFRGYSTNPLGGVYYVSPDFRT--------------VTPIIQNISVANGIALSTDEKVLWVTETT---ANRLHRIALED 213 (333)
T ss_dssp EECCCBTTBCCEEEEEECTTSCC--------------EEEEEEEESSEEEEEECTTSSEEEEEEGG---GTEEEEEEECT
T ss_pred EeccccccCCCceEEEEeCCCCE--------------EEEeecCCCcccceEECCCCCEEEEEeCC---CCeEEEEEecC
Confidence 43221 1124679999876532 122222111 1223489999988876543 35799999853
Q ss_pred -CCCeEE----ec-cCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCe------eEEEeecccC
Q 003878 394 -PNDWFE----VI-PEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIG------SVNAISARRE 461 (789)
Q Consensus 394 -~~~~~~----l~-~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~------~v~~~s~s~d 461 (789)
+..... +. .........++.+.+++.+++....++ .|++++.+ |+....+..+.. .+..+.+++|
T Consensus 214 ~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~--~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 214 DGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG--RVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp TSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT--EEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred CCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCC--EEEEECCC-CCEEEEEEcCCCccccccCcceEEECCC
Confidence 221221 11 111113556788887677777665554 78899985 665556655422 3456677788
Q ss_pred CcEEEEEEcCC--CCCcEEEEEECCC
Q 003878 462 DSVVFISFTSF--LIPGIVYQCNLKT 485 (789)
Q Consensus 462 ~~~l~~~~ss~--~~P~~ly~~dl~t 485 (789)
++.|+++...- .....+|++++..
T Consensus 291 g~~L~v~~~~g~~~~~~~l~~~~~~~ 316 (333)
T 2dg1_A 291 TNQLIICSNDIEMGGGSMLYTVNGFA 316 (333)
T ss_dssp SCEEEEEEECGGGTCCEEEEEEECSS
T ss_pred CCEEEEEeCccCCCCCceEEEEeccc
Confidence 88888766542 2356888888653
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.78 E-value=5.5e-08 Score=108.29 Aligned_cols=245 Identities=11% Similarity=0.005 Sum_probs=137.2
Q ss_pred CcEEEEeEEeCC-CCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccc
Q 003878 130 GTAALIKVSVSE-DAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYL 208 (789)
Q Consensus 130 ~~~~~~~~~~Sp-Dg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (789)
+...|..++||| ||++|+- |+...+|++||++++.......... ...+.. +.-..|++
T Consensus 163 H~~~V~~l~f~p~~~~~l~s-----~s~D~~v~iwd~~~~~~~~~~~~~~------~~~~~~----~~~~~~~~------ 221 (435)
T 4e54_B 163 AGGSITGLKFNPLNTNQFYA-----SSMEGTTRLQDFKGNILRVFASSDT------INIWFC----SLDVSASS------ 221 (435)
T ss_dssp SSCCCCEEEECSSCTTEEEE-----ECSSSCEEEEETTSCEEEEEECCSS------CSCCCC----CEEEETTT------
T ss_pred CCCCEEEEEEeCCCCCEEEE-----EeCCCEEEEeeccCCceeEEeccCC------CCccEE----EEEECCCC------
Confidence 445678899998 6888762 2334479999998874321110000 000000 11122444
Q ss_pred ccceeeEEEeeeccccceeeeeeec---------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEE
Q 003878 209 RGIFFFFYLFSLVKSTIYSFWSVVS---------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYY 279 (789)
Q Consensus 209 ~~~~~~~~~~~s~~~g~~~l~~~~~---------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (789)
.++++++.+|...+|.+.. .-...+++|+|+++.++++... ...|.+
T Consensus 222 ------~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~------------------d~~v~i 277 (435)
T 4e54_B 222 ------RMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASV------------------DQTVKI 277 (435)
T ss_dssp ------TEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEET------------------TSBCCE
T ss_pred ------CEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecC------------------cceeeE
Confidence 3677888999999998754 1224678999999877766432 234677
Q ss_pred EECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec--
Q 003878 280 HFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-- 357 (789)
Q Consensus 280 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-- 357 (789)
|++.+......++.. ..+...+..+.|||||++|+..+.+ ..|.++|+.++.. ...+..
T Consensus 278 wd~~~~~~~~~~~~~-~~h~~~v~~~~~spdg~~l~s~~~D-----~~i~iwd~~~~~~-------------~~~~~~~~ 338 (435)
T 4e54_B 278 WDLRQVRGKASFLYS-LPHRHPVNAACFSPDGARLLTTDQK-----SEIRVYSASQWDC-------------PLGLIPHP 338 (435)
T ss_dssp EETTTCCSSSCCSBC-CBCSSCEEECCBCTTSSEEEEEESS-----SCEEEEESSSSSS-------------EEEECCCC
T ss_pred EecccccccceEEEe-eeccccccceeECCCCCeeEEEcCC-----CEEEEEECCCCcc-------------ceEEeccc
Confidence 888665433222211 1223446688999999999876543 3488889877421 111110
Q ss_pred -----cccceeEEEecCCCEEEEEECCC--------CCCceEEEEECCCCCCeEEeccCCCCceeeeE-EEecCCEEEEE
Q 003878 358 -----GFDAQYEVIANDDTVFTFLTNKD--------APKYKIIRVDLKEPNDWFEVIPEAERDVLESA-TAVNLNQMIVS 423 (789)
Q Consensus 358 -----~~~~~~~~~s~dG~~l~~~tn~~--------~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v-~~~~~~~lv~~ 423 (789)
........|++++..+++....+ .....|..+|..+++....+..+. ...+..+ .+++++.++++
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~s~~~fspdg~~las 417 (435)
T 4e54_B 339 HRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGISSLNEFNPMGDTLAS 417 (435)
T ss_dssp CCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCCCEEEECTTSSCEEE
T ss_pred ccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEEEEEEECCCCCEEEE
Confidence 00001123666666655543221 122358888988876333343222 2344555 57776667766
Q ss_pred EEeCCeEEEEEEECCCCce
Q 003878 424 YLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 424 ~~~~g~~~L~~~dl~tG~~ 442 (789)
.. ++ .|++|++++|+.
T Consensus 418 g~-d~--~i~iW~~~~gk~ 433 (435)
T 4e54_B 418 AM-GY--HILIWSQQEART 433 (435)
T ss_dssp EC-SS--EEEECCCC----
T ss_pred Ec-CC--cEEEEECCcCee
Confidence 54 44 699999998765
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.9e-07 Score=107.93 Aligned_cols=232 Identities=12% Similarity=0.041 Sum_probs=139.5
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+...+..+++||||++|+-+ +...+|+|||+.++..+.. +... .+. ..+..+.|++
T Consensus 429 h~~~v~~v~~s~~g~~l~sg-----s~Dg~v~vwd~~~~~~~~~-~~~h-------~~~----v~~~~~s~~~------- 484 (694)
T 3dm0_A 429 HSHFVEDVVLSSDGQFALSG-----SWDGELRLWDLAAGVSTRR-FVGH-------TKD----VLSVAFSLDN------- 484 (694)
T ss_dssp CSSCEEEEEECTTSSEEEEE-----ETTSEEEEEETTTTEEEEE-EECC-------SSC----EEEEEECTTS-------
T ss_pred CCCcEEEEEECCCCCEEEEE-----eCCCcEEEEECCCCcceeE-EeCC-------CCC----EEEEEEeCCC-------
Confidence 33457889999999999843 3345899999999865431 1111 110 1122233555
Q ss_pred cceeeEEEeeeccccceeeeeeec-------------ccccceEEEEeCCc--EEEEEEccCCCCCCCCCCCccccCCcc
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVS-------------QFKFSSIAWTHDSK--GFFYSRYPAPKEGKDMDAGTETDSNLY 274 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~-------------~~~~~~~~wspDg~--~i~y~~~~~~~~~~~~~~~~~~~~~~~ 274 (789)
+.++++..+|+..||.+.. ......++|+|++. .|+.... .
T Consensus 485 -----~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-------------------d 540 (694)
T 3dm0_A 485 -----RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW-------------------D 540 (694)
T ss_dssp -----SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEET-------------------T
T ss_pred -----CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC-------------------C
Confidence 3577888999999997532 01135689999874 3443322 2
Q ss_pred cEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEe
Q 003878 275 HEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK 354 (789)
Q Consensus 275 ~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 354 (789)
..|.+|++.+... ...+. .+...+..+.|||||++|+..+.+ ..|.++|+.++. ....
T Consensus 541 ~~v~vwd~~~~~~--~~~~~--~h~~~v~~v~~spdg~~l~sg~~D-----g~i~iwd~~~~~-------------~~~~ 598 (694)
T 3dm0_A 541 KTVKVWNLSNCKL--RSTLA--GHTGYVSTVAVSPDGSLCASGGKD-----GVVLLWDLAEGK-------------KLYS 598 (694)
T ss_dssp SCEEEEETTTCCE--EEEEC--CCSSCEEEEEECTTSSEEEEEETT-----SBCEEEETTTTE-------------EEEC
T ss_pred CeEEEEECCCCcE--EEEEc--CCCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCc-------------eEEE
Confidence 3588899876432 22222 334457789999999998866543 348888998742 1111
Q ss_pred eeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCC-----------------CCceeeeEEEecC
Q 003878 355 LIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-----------------ERDVLESATAVNL 417 (789)
Q Consensus 355 l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~-----------------~~~~i~~v~~~~~ 417 (789)
+..........|+|++..+...++ ..|..+|+.++.....+..+. ....+.++.|+++
T Consensus 599 ~~~~~~v~~~~~sp~~~~l~~~~~-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spd 673 (694)
T 3dm0_A 599 LEANSVIHALCFSPNRYWLCAATE-----HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD 673 (694)
T ss_dssp CBCSSCEEEEEECSSSSEEEEEET-----TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTT
T ss_pred ecCCCcEEEEEEcCCCcEEEEEcC-----CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCC
Confidence 111111122348998876664332 348888988764222221110 0112567889987
Q ss_pred CEEEEEEEeCCeEEEEEEECC
Q 003878 418 NQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 418 ~~lv~~~~~~g~~~L~~~dl~ 438 (789)
+..+++...|+ .|++|++.
T Consensus 674 g~~l~sgs~Dg--~i~iW~i~ 692 (694)
T 3dm0_A 674 GSTLFSGYTDG--VIRVWGIG 692 (694)
T ss_dssp SSEEEEEETTS--EEEEEEC-
T ss_pred CCEEEEEcCCC--eEEEEecc
Confidence 88888888888 68888874
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=8.5e-07 Score=95.31 Aligned_cols=251 Identities=13% Similarity=0.068 Sum_probs=137.7
Q ss_pred CCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec-ccccccccccccCccceeeeeeccccccccccccc
Q 003878 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLY 207 (789)
Q Consensus 129 ~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 207 (789)
++...+..++|||||++||.+. ...++++||+.++.... ..+... .+. ..+..+.|++
T Consensus 59 ~h~~~v~~~~~sp~g~~l~s~s-----~D~~v~iw~~~~~~~~~~~~~~~h-------~~~----v~~v~~sp~~----- 117 (345)
T 3fm0_A 59 GHQRTVRKVAWSPCGNYLASAS-----FDATTCIWKKNQDDFECVTTLEGH-------ENE----VKSVAWAPSG----- 117 (345)
T ss_dssp SCSSCEEEEEECTTSSEEEEEE-----TTSCEEEEEECCC-EEEEEEECCC-------SSC----EEEEEECTTS-----
T ss_pred ccCCcEEEEEECCCCCEEEEEE-----CCCcEEEEEccCCCeEEEEEccCC-------CCC----ceEEEEeCCC-----
Confidence 3445688999999999998543 23478999988774211 111111 110 1122334666
Q ss_pred cccceeeEEEeeeccccceeeeeeec-------------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcc
Q 003878 208 LRGIFFFFYLFSLVKSTIYSFWSVVS-------------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLY 274 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g~~~l~~~~~-------------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~ 274 (789)
.+++++..+|+..||.+.. ......++|+||++.|+....+.
T Consensus 118 -------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~------------------ 172 (345)
T 3fm0_A 118 -------NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDD------------------ 172 (345)
T ss_dssp -------SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTS------------------
T ss_pred -------CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCC------------------
Confidence 4678888999999998753 11235789999999888664432
Q ss_pred cEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCC--CCCCcccccccCCCCcc
Q 003878 275 HEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA--LPEGLEGFKKRDGLLPF 352 (789)
Q Consensus 275 ~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~ 352 (789)
.|.++++.+... ..+.....+...+.+++|+|||++|+..+.++ .|.+++... ......... ....+
T Consensus 173 -~i~~w~~~~~~~--~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~-----~v~iW~~~~~~~~~~~~~~~---~~~~~ 241 (345)
T 3fm0_A 173 -TVKLYREEEDDW--VCCATLEGHESTVWSLAFDPSGQRLASCSDDR-----TVRIWRQYLPGNEQGVACSG---SDPSW 241 (345)
T ss_dssp -CEEEEEEETTEE--EEEEEECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEEECTTCTTCCCCC------CEE
T ss_pred -cEEEEEecCCCE--EEEEEecCCCCceEEEEECCCCCEEEEEeCCC-----eEEEeccccCCCCccceeec---cCCcc
Confidence 366666654321 12222223344577899999999998765432 255555422 110000000 00001
Q ss_pred Eee--ecc--cccee-EEEecCCCEEEEEECCCCCCceEEEEECCCCC-----CeEEe--ccCCCCceeeeEEEecCC-E
Q 003878 353 VKL--IDG--FDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-----DWFEV--IPEAERDVLESATAVNLN-Q 419 (789)
Q Consensus 353 ~~l--~~~--~~~~~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~-----~~~~l--~~~~~~~~i~~v~~~~~~-~ 419 (789)
..+ ..+ ....+ ..|++++..|+..+.. ..|..++.+... ..... ........+..++|++++ .
T Consensus 242 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 317 (345)
T 3fm0_A 242 KCICTLSGFHSRTIYDIAWCQLTGALATACGD----DAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPG 317 (345)
T ss_dssp EEEEEECSSCSSCEEEEEECTTTCCEEEEETT----SCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTT
T ss_pred ceeEEecCCCCCcEEEEEEecCCCEEEEEeCC----CeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCce
Confidence 111 111 11122 3488888877755443 345555544321 01111 111123568889999854 5
Q ss_pred EEEEEEeCCeEEEEEEECCCCce
Q 003878 420 MIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 420 lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
++++...|+ .|++|++.+++.
T Consensus 318 ~laS~s~Dg--~v~~W~~~~~~~ 338 (345)
T 3fm0_A 318 LLASCSDDG--EVAFWKYQRPEG 338 (345)
T ss_dssp EEEEEETTS--CEEEEEECC---
T ss_pred EEEEcCCCC--cEEEEEecCCCC
Confidence 888999888 688888876554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.77 E-value=8.7e-07 Score=106.47 Aligned_cols=222 Identities=11% Similarity=0.050 Sum_probs=146.9
Q ss_pred EEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCC
Q 003878 215 FYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT 284 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~ 284 (789)
.+++++..+|.-.||.+.. ......++|+|||+.|+....+ ..|.+|++.+
T Consensus 26 ~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------------------g~i~vw~~~~ 86 (814)
T 3mkq_A 26 PWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD-------------------FRIRVFNYNT 86 (814)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT-------------------SEEEEEETTT
T ss_pred CEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCC-------------------CeEEEEECCC
Confidence 3566777889999998654 2224678999999999877432 3588999876
Q ss_pred CCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-ee
Q 003878 285 KQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QY 363 (789)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 363 (789)
+.. ...+.. +...+..+.|+|||++|+.... ...|.++++.++. .....+...... ..
T Consensus 87 ~~~--~~~~~~--~~~~v~~~~~s~~~~~l~~~~~-----dg~i~vw~~~~~~------------~~~~~~~~~~~~v~~ 145 (814)
T 3mkq_A 87 GEK--VVDFEA--HPDYIRSIAVHPTKPYVLSGSD-----DLTVKLWNWENNW------------ALEQTFEGHEHFVMC 145 (814)
T ss_dssp CCE--EEEEEC--CSSCEEEEEECSSSSEEEEEET-----TSEEEEEEGGGTS------------EEEEEEECCSSCEEE
T ss_pred CcE--EEEEec--CCCCEEEEEEeCCCCEEEEEcC-----CCEEEEEECCCCc------------eEEEEEcCCCCcEEE
Confidence 532 223332 3345678999999999886553 3458888887631 111122221111 22
Q ss_pred EEEec-CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec--CCEEEEEEEeCCeEEEEEEECCCC
Q 003878 364 EVIAN-DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN--LNQMIVSYLSDVKYVLQIRDLKNG 440 (789)
Q Consensus 364 ~~~s~-dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~--~~~lv~~~~~~g~~~L~~~dl~tG 440 (789)
..|+| +|+.|+..+. ++.|..+|+.++.....+..+. ...+..+.+++ ++.++++...++ .|.+||+.++
T Consensus 146 ~~~~p~~~~~l~~~~~----dg~v~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg--~i~~~d~~~~ 218 (814)
T 3mkq_A 146 VAFNPKDPSTFASGCL----DRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDL--TIKIWDYQTK 218 (814)
T ss_dssp EEEETTEEEEEEEEET----TSEEEEEETTCSSCSEEEECCC-TTCCCEEEECCSTTCCEEEEECTTS--EEEEEETTTT
T ss_pred EEEEcCCCCEEEEEeC----CCeEEEEECCCCcceeEEecCC-CCCEEEEEEEECCCCCEEEEEeCCC--EEEEEECCCC
Confidence 34888 6666665443 3579999997765333333332 24466777776 667777777776 7999999888
Q ss_pred ceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 441 SLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 441 ~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+....+..+.+.+..+.++++++.++... .-+.++.||+.+++
T Consensus 219 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~v~vwd~~~~~ 261 (814)
T 3mkq_A 219 SCVATLEGHMSNVSFAVFHPTLPIIISGS----EDGTLKIWNSSTYK 261 (814)
T ss_dssp EEEEEEECCSSCEEEEEECSSSSEEEEEE----TTSCEEEEETTTCS
T ss_pred cEEEEEcCCCCCEEEEEEcCCCCEEEEEe----CCCeEEEEECCCCc
Confidence 77666665666788889999998666443 23679999998875
|
| >2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS, non-ribosomal peptide synthetase, type II thioesterase, antibiotic biosynthesis; NMR {Bacillus subtilis} PDB: 2ron_A | Back alignment and structure |
|---|
Probab=98.75 E-value=7.7e-09 Score=105.24 Aligned_cols=92 Identities=15% Similarity=0.144 Sum_probs=63.4
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHc-CC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA-GY 614 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~-~~ 614 (789)
++.|.||++||..+... .|.. ....|. .+|.|+.+|.||.|.... ...+|+.+.++.+++. +.
T Consensus 11 ~~~~~lv~lhg~g~~~~--~~~~-~~~~L~-~~~~vi~~Dl~GhG~S~~------------~~~~~~~~~~~~~~~~l~~ 74 (242)
T 2k2q_B 11 SEKTQLICFPFAGGYSA--SFRP-LHAFLQ-GECEMLAAEPPGHGTNQT------------SAIEDLEELTDLYKQELNL 74 (242)
T ss_dssp TCCCEEESSCCCCHHHH--HHHH-HHHHHC-CSCCCEEEECCSSCCSCC------------CTTTHHHHHHHHTTTTCCC
T ss_pred CCCceEEEECCCCCCHH--HHHH-HHHhCC-CCeEEEEEeCCCCCCCCC------------CCcCCHHHHHHHHHHHHHh
Confidence 45577899999776532 3333 345565 689999999999875421 1235666666666543 22
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHh------CCCce
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQ------RPDLF 643 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~------~pd~f 643 (789)
...+++.++|||+||.++..++.+ +|++.
T Consensus 75 ~~~~~~~lvGhSmGG~iA~~~A~~~~~~~~~p~~v 109 (242)
T 2k2q_B 75 RPDRPFVLFGHSMGGMITFRLAQKLEREGIFPQAV 109 (242)
T ss_dssp CCCSSCEEECCSSCCHHHHHHHHHHHHHHCSSCSE
T ss_pred hcCCCEEEEeCCHhHHHHHHHHHHHHHcCCCCCEE
Confidence 223689999999999999998876 67753
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.75 E-value=5.5e-06 Score=89.75 Aligned_cols=91 Identities=13% Similarity=0.135 Sum_probs=58.9
Q ss_pred EEecCCCEEEEEECCCC-------CCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEEC
Q 003878 365 VIANDDTVFTFLTNKDA-------PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~~-------~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl 437 (789)
.+++||+++|+....++ ....|.++|+++.+....+ +-. . ..+++++++++.++.... ..|.+||.
T Consensus 260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i-~~~--~-p~~ia~spdg~~l~v~n~---~~v~v~D~ 332 (361)
T 2oiz_A 260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARI-PGR--D-ALSMTIDQQRNLMLTLDG---GNVNVYDI 332 (361)
T ss_dssp EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEE-ECT--T-CCEEEEETTTTEEEEECS---SCEEEEEC
T ss_pred EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEE-ecC--C-eeEEEECCCCCEEEEeCC---CeEEEEEC
Confidence 57899999998653111 2358999999987633333 332 2 678889886555544443 57999999
Q ss_pred CCC--ceeeecc-cCCeeEEEeecccCCc
Q 003878 438 KNG--SLLHQLP-IEIGSVNAISARREDS 463 (789)
Q Consensus 438 ~tG--~~~~~l~-~~~~~v~~~s~s~d~~ 463 (789)
++| +.+..+. ... .-..+.++|+|.
T Consensus 333 ~t~~l~~~~~i~~~G~-~P~~~~~~p~G~ 360 (361)
T 2oiz_A 333 SQPEPKLLRTIEGAAE-ASLQVQFHPVGG 360 (361)
T ss_dssp SSSSCEEEEEETTSCS-SEEEEEECCCSC
T ss_pred CCCcceeeEEeccCCC-CcEEEEecCCCC
Confidence 999 7766653 222 233566777764
|
| >3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-07 Score=96.86 Aligned_cols=198 Identities=11% Similarity=0.010 Sum_probs=115.4
Q ss_pred cEEEEEcCCCCccCCCCCCHHHHHHHHcCC---eEEEEEeecCCCC--CChhHHh--------cccccCCc------chH
Q 003878 539 PCLLYGYGGFNISVTPSFSVSRTILMRHLG---AVFCIANIRGGGE--YGEEWHK--------GGALAKKQ------NCF 599 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G---~~v~~~~~RG~g~--~g~~~~~--------~~~~~~~~------~~~ 599 (789)
+.||++||..+... .|.. ....|.++| +.|+.+++++.|. +...+.. -...++.. ...
T Consensus 5 ~pvv~iHG~~~~~~--~~~~-~~~~L~~~~~~~~~vi~~~v~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~a 81 (250)
T 3lp5_A 5 APVIMVPGSSASQN--RFDS-LITELGKETPKKHSVLKLTVQTDGTIKYSGSIAANDNEPFIVIGFANNRDGKANIDKQA 81 (250)
T ss_dssp CCEEEECCCGGGHH--HHHH-HHHHHHHHSSSCCCEEEEEECTTSCEEEEECCCTTCSSCEEEEEESCCCCSHHHHHHHH
T ss_pred CCEEEECCCCCCHH--HHHH-HHHHHHhcCCCCceEEEEEEecCCeEEEeeecCCCCcCCeEEEEeccCCCcccCHHHHH
Confidence 45777999766432 3333 344555466 6778777776553 1111100 00011111 123
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC-----CCceeEEEecCCcccccccccccCCccchhhcCCC
Q 003878 600 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR-----PDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCS 674 (789)
Q Consensus 600 ~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~-----pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p 674 (789)
+++.+++++|.++- .-+++.++||||||+++..++.++ |+.++.+|+..+..+...... .
T Consensus 82 ~~l~~~~~~l~~~~--~~~~~~lvGHSmGg~~a~~~~~~~~~~~~~~~v~~lv~l~~p~~g~~~~~-------------~ 146 (250)
T 3lp5_A 82 VWLNTAFKALVKTY--HFNHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYNMESTST-------------T 146 (250)
T ss_dssp HHHHHHHHHHHTTS--CCSEEEEEEETHHHHHHHHHHHHTGGGSTTCEEEEEEEESCCTTTTCCCS-------------S
T ss_pred HHHHHHHHHHHHHc--CCCCeEEEEECHhHHHHHHHHHHccccccchhhCEEEEECCCCCcccccc-------------c
Confidence 67777888887662 336899999999999999988876 677888887766444321100 0
Q ss_pred CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecC----CCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEE
Q 003878 675 EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTAD----HDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPII 750 (789)
Q Consensus 675 ~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~----~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 750 (789)
.....++.|.+..+ .+.. ..|+|+++|. +|..||+..+..+...++.. .....
T Consensus 147 ~~~~~~~~l~~~~~--~lp~-----------~vpvl~I~G~~~~~~Dg~Vp~~sa~~l~~l~~~~----------~~~~~ 203 (250)
T 3lp5_A 147 AKTSMFKELYRYRT--GLPE-----------SLTVYSIAGTENYTSDGTVPYNSVNYGKYIFQDQ----------VKHFT 203 (250)
T ss_dssp CCCHHHHHHHHTGG--GSCT-----------TCEEEEEECCCCCCTTTBCCHHHHTTHHHHHTTT----------SSEEE
T ss_pred ccCHHHHHHHhccc--cCCC-----------CceEEEEEecCCCCCCceeeHHHHHHHHHHhccc----------ccceE
Confidence 11123444443211 1111 4699999999 89999998887776666543 23333
Q ss_pred EEEeC--CCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 751 GRIER--KAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 751 l~~~~--~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
...+. +++|...-.. -+..+.+.+||.
T Consensus 204 ~~~v~g~~a~H~~l~e~---~~v~~~I~~FL~ 232 (250)
T 3lp5_A 204 EITVTGANTAHSDLPQN---KQIVSLIRQYLL 232 (250)
T ss_dssp EEECTTTTBSSCCHHHH---HHHHHHHHHHTS
T ss_pred EEEEeCCCCchhcchhC---HHHHHHHHHHHh
Confidence 33343 4679874322 245667777775
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.5e-06 Score=93.54 Aligned_cols=198 Identities=8% Similarity=-0.020 Sum_probs=127.1
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...++|+|||+.|+....+ ..|.+|++.+... ...+.. +...+..+.| +++.++.
T Consensus 137 v~~v~~s~~~~~l~~~~~d-------------------g~i~iwd~~~~~~--~~~~~~--~~~~v~~~~~--~~~~l~~ 191 (401)
T 4aez_A 137 VASVKWSHDGSFLSVGLGN-------------------GLVDIYDVESQTK--LRTMAG--HQARVGCLSW--NRHVLSS 191 (401)
T ss_dssp EEEEEECTTSSEEEEEETT-------------------SCEEEEETTTCCE--EEEECC--CSSCEEEEEE--ETTEEEE
T ss_pred EEEEEECCCCCEEEEECCC-------------------CeEEEEECcCCeE--EEEecC--CCCceEEEEE--CCCEEEE
Confidence 5789999999999877543 2488888876532 223332 3334556777 5677765
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce-eEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
... ...|+++|+.... .....+....... ...|+|+|+.|+..+. +..|..+|+.++.
T Consensus 192 ~~~-----dg~i~i~d~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~----d~~v~iwd~~~~~ 250 (401)
T 4aez_A 192 GSR-----SGAIHHHDVRIAN------------HQIGTLQGHSSEVCGLAWRSDGLQLASGGN----DNVVQIWDARSSI 250 (401)
T ss_dssp EET-----TSEEEEEETTSSS------------CEEEEEECCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTCSS
T ss_pred EcC-----CCCEEEEecccCc------------ceeeEEcCCCCCeeEEEEcCCCCEEEEEeC----CCeEEEccCCCCC
Confidence 542 3568999987521 1122222222212 2348999998876554 3579999998876
Q ss_pred CeEEeccCCCCceeeeEEEecC-CEEEEEEE--eCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCC
Q 003878 396 DWFEVIPEAERDVLESATAVNL-NQMIVSYL--SDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSF 472 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~--~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~ 472 (789)
....+..+. ..+..+.++++ ..++++.. .++ .|++||+.+++....+.. ...+..+.++++++.++.+..+
T Consensus 251 ~~~~~~~~~--~~v~~~~~~p~~~~ll~~~~gs~d~--~i~i~d~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~g~- 324 (401)
T 4aez_A 251 PKFTKTNHN--AAVKAVAWCPWQSNLLATGGGTMDK--QIHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGF- 324 (401)
T ss_dssp EEEEECCCS--SCCCEEEECTTSTTEEEEECCTTTC--EEEEEETTTCCEEEEEEC-SSCEEEEEECSSSSEEEEEECT-
T ss_pred ccEEecCCc--ceEEEEEECCCCCCEEEEecCCCCC--EEEEEECCCCCEEEEEeC-CCcEEEEEECCCCCeEEEEeec-
Confidence 333343333 56788999884 45666654 344 799999998877565543 3457788999999987765422
Q ss_pred CCCcEEEEEECCCCC
Q 003878 473 LIPGIVYQCNLKTET 487 (789)
Q Consensus 473 ~~P~~ly~~dl~tg~ 487 (789)
.-+.++.||+.+++
T Consensus 325 -~dg~i~v~~~~~~~ 338 (401)
T 4aez_A 325 -PDNNLSIWSYSSSG 338 (401)
T ss_dssp -TTCEEEEEEEETTE
T ss_pred -CCCcEEEEecCCcc
Confidence 34688999988763
|
| >1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-08 Score=116.62 Aligned_cols=117 Identities=18% Similarity=0.143 Sum_probs=80.7
Q ss_pred CCCccEEEEEcCCCCccCC---CCCCHHHHHHHHcCCeEEEEEeecCC-CCCCh---hHHh-cccccCCcchHHHHHHHH
Q 003878 535 DGSHPCLLYGYGGFNISVT---PSFSVSRTILMRHLGAVFCIANIRGG-GEYGE---EWHK-GGALAKKQNCFDDFISAS 606 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~---~~~~~~~~~~l~~~G~~v~~~~~RG~-g~~g~---~~~~-~~~~~~~~~~~~D~~~~~ 606 (789)
.++.|+||++|||...... ..+.. ..++++.|++|+.+|||-| -+|.. .... ......+...+.|.++++
T Consensus 138 ~~~~PV~v~iHGGg~~~g~~~~~~~~~--~~l~~~~~~vvv~~nYRlg~~Gfl~~~~~~~~~~~~~~~~n~gl~D~~~al 215 (585)
T 1dx4_A 138 TNGLPILIWIYGGGFMTGSATLDIYNA--DIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALAI 215 (585)
T ss_dssp CSSEEEEEEECCSTTTCCCTTCGGGCC--HHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcccCCCCCCCCCCc--hhhhccCCEEEEEecccccchhhcccccccccccCCCCCCcccHHHHHHHH
Confidence 4678999999998543333 23333 2344447999999999942 12211 1100 111122344589999999
Q ss_pred HHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhC--CCceeEEEecCCcc
Q 003878 607 EYLISAG---YTQSRKLCIEGGSNGGLLVGACINQR--PDLFGCALAHVGVM 653 (789)
Q Consensus 607 ~~L~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--pd~f~a~v~~~p~~ 653 (789)
+|+.++- ..||+||.|+|+|+||.+++.++... ..+|+++|+++|..
T Consensus 216 ~wv~~ni~~fggDp~~vti~G~SaGg~~v~~~~~~~~~~~lf~~ai~~Sg~~ 267 (585)
T 1dx4_A 216 RWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTM 267 (585)
T ss_dssp HHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCT
T ss_pred HHHHHHHHHhCCCcceeEEeecchHHHHHHHHHhCCcccchhHhhhhhcccc
Confidence 9999872 35999999999999999998887752 36999999998864
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1e-06 Score=93.50 Aligned_cols=224 Identities=9% Similarity=0.036 Sum_probs=138.6
Q ss_pred EEEEeEEeCCCCc-EEEEEEecCCceEEEEEEEEc-CCCceecccccc--cccccccCccceeeeeeccccccccccccc
Q 003878 132 AALIKVSVSEDAK-YLAYALSYSGSDWATIKLMRI-EDQIVEADALSW--VCFCFSHSFGYFFHLTISLLNVPTYKLFLY 207 (789)
Q Consensus 132 ~~~~~~~~SpDg~-~la~~~~~~g~~~~~i~v~dl-~tg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 207 (789)
..+..+.++|||+ +|+.+.. . ..|++||+ .+++... +.. . .+
T Consensus 57 ~~v~~~~~~~~~~~~l~~~~~-d----g~i~~wd~~~~~~~~~--~~~~~~-------~~-------------------- 102 (342)
T 1yfq_A 57 HPLLCCNFIDNTDLQIYVGTV-Q----GEILKVDLIGSPSFQA--LTNNEA-------NL-------------------- 102 (342)
T ss_dssp SCEEEEEEEESSSEEEEEEET-T----SCEEEECSSSSSSEEE--CBSCCC-------CS--------------------
T ss_pred CceEEEEECCCCCcEEEEEcC-C----CeEEEEEeccCCceEe--ccccCC-------CC--------------------
Confidence 3478899999999 8875442 3 37999999 8885432 111 1 00
Q ss_pred cccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCC---
Q 003878 208 LRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT--- 284 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~--- 284 (789)
....++|+| ++.|+....+ ..|++|++.+
T Consensus 103 ----------------------------~v~~l~~~~-~~~l~s~~~d-------------------~~i~iwd~~~~~~ 134 (342)
T 1yfq_A 103 ----------------------------GICRICKYG-DDKLIAASWD-------------------GLIEVIDPRNYGD 134 (342)
T ss_dssp ----------------------------CEEEEEEET-TTEEEEEETT-------------------SEEEEECHHHHTT
T ss_pred ----------------------------ceEEEEeCC-CCEEEEEcCC-------------------CeEEEEccccccc
Confidence 246899999 8888765432 3577777654
Q ss_pred ------CCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCC-CCCCcccccccCCCCccEeeec
Q 003878 285 ------KQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA-LPEGLEGFKKRDGLLPFVKLID 357 (789)
Q Consensus 285 ------~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~l~~ 357 (789)
..... .+. +...+..+.++|++ ++.... ...|+++|+.+ +.. .......
T Consensus 135 ~~~~~~~~~~~--~~~---~~~~v~~~~~~~~~--l~~~~~-----d~~i~i~d~~~~~~~------------~~~~~~~ 190 (342)
T 1yfq_A 135 GVIAVKNLNSN--NTK---VKNKIFTMDTNSSR--LIVGMN-----NSQVQWFRLPLCEDD------------NGTIEES 190 (342)
T ss_dssp BCEEEEESCSS--SSS---SCCCEEEEEECSSE--EEEEES-----TTEEEEEESSCCTTC------------CCEEEEC
T ss_pred ccccccCCeee--EEe---eCCceEEEEecCCc--EEEEeC-----CCeEEEEECCccccc------------cceeeec
Confidence 21111 111 23346688999988 444432 34689999886 421 1111111
Q ss_pred --cccceeEEEec-CCCEEEEEECCCCCCceEEEEECCCC------CCeEEeccCCC-------CceeeeEEEecCCEEE
Q 003878 358 --GFDAQYEVIAN-DDTVFTFLTNKDAPKYKIIRVDLKEP------NDWFEVIPEAE-------RDVLESATAVNLNQMI 421 (789)
Q Consensus 358 --~~~~~~~~~s~-dG~~l~~~tn~~~~~~~L~~~dl~~~------~~~~~l~~~~~-------~~~i~~v~~~~~~~lv 421 (789)
........|+| +|+.++..+. ++.|..++++.. .....+..+.. ...+..+.+++++.++
T Consensus 191 ~~~~~i~~i~~~~~~~~~l~~~~~----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 266 (342)
T 1yfq_A 191 GLKYQIRDVALLPKEQEGYACSSI----DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFL 266 (342)
T ss_dssp SCSSCEEEEEECSGGGCEEEEEET----TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCE
T ss_pred CCCCceeEEEECCCCCCEEEEEec----CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEE
Confidence 11112234889 9988776554 356777776554 32333333321 1267889999877777
Q ss_pred EEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEeecccCCcEEEEEE
Q 003878 422 VSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISF 469 (789)
Q Consensus 422 ~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s~d~~~l~~~~ 469 (789)
++...++ .|++||+.+++.+..+... ...+..+. ++++.++...
T Consensus 267 ~~~~~dg--~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s 311 (342)
T 1yfq_A 267 YTAGSDG--IISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLAT 311 (342)
T ss_dssp EEEETTS--CEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEE
T ss_pred EEecCCc--eEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEe
Confidence 7788777 6899999988876777665 66777777 7888666543
|
| >1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.9e-08 Score=111.78 Aligned_cols=113 Identities=11% Similarity=-0.018 Sum_probs=79.1
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHH-HHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSR-TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 614 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~-~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~ 614 (789)
...|+||++||..+.. ...|.... ..+++..||.|+++|+||.|.... ... ...-....+|+.+.+++|.++.-
T Consensus 68 ~~~~~vvllHG~~~s~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~g~s~~--~~~--~~~~~~~~~dl~~~i~~l~~~~g 142 (432)
T 1gpl_A 68 LNRKTRFIIHGFTDSG-ENSWLSDMCKNMFQVEKVNCICVDWKGGSKAQY--SQA--SQNIRVVGAEVAYLVQVLSTSLN 142 (432)
T ss_dssp TTSEEEEEECCTTCCT-TSHHHHHHHHHHHHHCCEEEEEEECHHHHTSCH--HHH--HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEECCCCCCC-CchHHHHHHHHHHhcCCcEEEEEECccccCccc--hhh--HhhHHHHHHHHHHHHHHHHHhcC
Confidence 4578999999976553 22343322 334333699999999999765431 111 01112234678888888875533
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
++.+++.++|||+||.+++.++.++|++++++++..|..
T Consensus 143 ~~~~~i~lvGhSlGg~vA~~~a~~~p~~v~~iv~l~pa~ 181 (432)
T 1gpl_A 143 YAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPAE 181 (432)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTTTTCSSEEEEESCBC
T ss_pred CCcccEEEEEeCHHHHHHHHHHHhcccccceeEEecccc
Confidence 467899999999999999999999999999998877643
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-06 Score=97.13 Aligned_cols=206 Identities=12% Similarity=0.058 Sum_probs=122.8
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCc-----EEEEecCCCCeeEEEEEEecCC
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSED-----ILCWKDPEHPKYIFSGHVTEDG 311 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~-----~~~~~~~~~~~~~~~~~~SpDG 311 (789)
...++|+|+++.++++.. ....|.+|++.+..... ...+. .+...+..+.|+|++
T Consensus 184 v~~l~~~~~~~~~l~s~~------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~--~h~~~v~~v~~~p~~ 243 (430)
T 2xyi_A 184 GYGLSWNPNLNGYLLSAS------------------DDHTICLWDINATPKEHRVIDAKNIFT--GHTAVVEDVAWHLLH 243 (430)
T ss_dssp CCCEEECTTSTTEEEEEC------------------TTSCEEEEETTSCCBGGGEEECSEEEC--CCSSCEEEEEECSSC
T ss_pred eEEEEeCCCCCCeEEEEe------------------CCCeEEEEeCCCCCCCCceeccceeec--CCCCCEeeeEEeCCC
Confidence 478999999984444422 22348888887643221 12222 233446789999965
Q ss_pred cEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEE
Q 003878 312 QYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVD 390 (789)
Q Consensus 312 ~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~d 390 (789)
..+++.... ...|+++|+.++.. ..+...+.... ......|+|+++.+++.... ++.|..+|
T Consensus 244 ~~~l~s~~~----dg~i~i~d~~~~~~----------~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~---dg~v~vwd 306 (430)
T 2xyi_A 244 ESLFGSVAD----DQKLMIWDTRNNNT----------SKPSHTVDAHTAEVNCLSFNPYSEFILATGSA---DKTVALWD 306 (430)
T ss_dssp TTEEEEEET----TSEEEEEETTCSCS----------SSCSEEEECCSSCEEEEEECSSCTTEEEEEET---TSEEEEEE
T ss_pred CCEEEEEeC----CCeEEEEECCCCCC----------CcceeEeecCCCCeEEEEeCCCCCCEEEEEeC---CCeEEEEe
Confidence 555554432 35699999987420 11222222211 11223489998876655543 36799999
Q ss_pred CCCCC-CeEEeccCCCCceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCCC--------------ceeeecccCCeeEE
Q 003878 391 LKEPN-DWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNG--------------SLLHQLPIEIGSVN 454 (789)
Q Consensus 391 l~~~~-~~~~l~~~~~~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~tG--------------~~~~~l~~~~~~v~ 454 (789)
+.... ....+..+. ..+..+.|++++ .++++...++ .|.+||+... +.+..+......+.
T Consensus 307 ~~~~~~~~~~~~~h~--~~v~~i~~sp~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 382 (430)
T 2xyi_A 307 LRNLKLKLHSFESHK--DEIFQVQWSPHNETILASSGTDR--RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS 382 (430)
T ss_dssp TTCTTSCSEEEECCS--SCEEEEEECSSCTTEEEEEETTS--CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEE
T ss_pred CCCCCCCeEEeecCC--CCEEEEEECCCCCCEEEEEeCCC--cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCce
Confidence 98743 234443343 567889999854 5788888776 6888998642 11122222345578
Q ss_pred EeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 455 AISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 455 ~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
.+.++++++.++++.+ .-+.+..|++..+
T Consensus 383 ~~~~~p~~~~~l~s~s---~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 383 DFSWNPNEPWIICSVS---EDNIMQVWQMAEN 411 (430)
T ss_dssp EEEECSSSTTEEEEEE---TTSEEEEEEECHH
T ss_pred EEEECCCCCCEEEEEE---CCCCEEEeEcccc
Confidence 8899999884554443 2367788877543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.5e-06 Score=92.72 Aligned_cols=204 Identities=11% Similarity=0.021 Sum_probs=111.1
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC---CcEEEEecCCCCeeEEEEEEecCCcE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS---EDILCWKDPEHPKYIFSGHVTEDGQY 313 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~---~~~~~~~~~~~~~~~~~~~~SpDG~~ 313 (789)
...++|+|||+.|+....+ ..|.+|++..... ....+.....+...+..++|+|||++
T Consensus 61 v~~v~~sp~~~~las~s~D-------------------~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~ 121 (330)
T 2hes_X 61 IRSVAWRPHTSLLAAGSFD-------------------STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYY 121 (330)
T ss_dssp EEEEEECTTSSEEEEEETT-------------------SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCE
T ss_pred EEEEEECCCCCEEEEEeCC-------------------CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCE
Confidence 4789999999988866433 2477777743211 11122222223344678999999999
Q ss_pred EEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce-eEEEecCCCEEEEEECCCCCCceEEEEECC
Q 003878 314 LVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLK 392 (789)
Q Consensus 314 l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~ 392 (789)
|+..+.+ ..|.++|+...... ......+....... ...|+|+++.|+..+. +..|..+++.
T Consensus 122 las~s~D-----~~v~iwd~~~~~~~---------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~i~iW~~~ 183 (330)
T 2hes_X 122 LATCSRD-----KSVWIWETDESGEE---------YECISVLQEHSQDVKHVIWHPSEALLASSSY----DDTVRIWKDY 183 (330)
T ss_dssp EEEEETT-----SCEEEEECCTTCCC---------CEEEEEECCCSSCEEEEEECSSSSEEEEEET----TSCEEEEEEE
T ss_pred EEEEeCC-----CEEEEEeccCCCCC---------eEEEEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECC
Confidence 8866543 34888888532100 01111122211112 2348999987765443 2456666665
Q ss_pred CCC--CeEEeccCCCCceeeeEEEecC--CEEEEEEEeCCeEEEEEEECCCCc--------eeeeccc-CCeeEEEeecc
Q 003878 393 EPN--DWFEVIPEAERDVLESATAVNL--NQMIVSYLSDVKYVLQIRDLKNGS--------LLHQLPI-EIGSVNAISAR 459 (789)
Q Consensus 393 ~~~--~~~~l~~~~~~~~i~~v~~~~~--~~lv~~~~~~g~~~L~~~dl~tG~--------~~~~l~~-~~~~v~~~s~s 459 (789)
++. ....+..+. ..+..+.++++ ...+++...++ .|.+|++.++. ....+.. +...+..++++
T Consensus 184 ~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s~s~D~--~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 259 (330)
T 2hes_X 184 DDDWECVAVLNGHE--GTVWSSDFDKTEGVFRLCSGSDDS--TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG 259 (330)
T ss_dssp TTEEEEEEEECCCS--SCEEEEEECCSSSSCEEEEEETTS--CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC
T ss_pred CCCeeEEEEccCCC--CcEEEEEecCCCCeeEEEEEeCCC--eEEEEEecCCCccccceeEEeeecccccccceEEEEEc
Confidence 442 122333333 45778888874 45677888887 57777765331 1122222 34557777777
Q ss_pred cCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 460 REDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 460 ~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
+++ . +++.+ .-+.+..||..++
T Consensus 260 ~~~-~-l~s~~---~dg~v~iw~~~~~ 281 (330)
T 2hes_X 260 FNG-L-IASVG---ADGVLAVYEEVDG 281 (330)
T ss_dssp TTS-C-EEEEE---TTSCEEEEEEETT
T ss_pred CCC-E-EEEEe---CCCEEEEEEcCCC
Confidence 554 2 33332 2457788887766
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.73 E-value=2.5e-06 Score=92.49 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=49.8
Q ss_pred EEEecC-CEEEEEEEeCC--------eEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEE
Q 003878 412 ATAVNL-NQMIVSYLSDV--------KYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 412 v~~~~~-~~lv~~~~~~g--------~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~d 482 (789)
++++++ +++|+....++ ...|++||+++++.+..+..+. ..++.++||++.++.+ + . .++..||
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~-n---~-~~v~v~D 331 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTL-D---G-GNVNVYD 331 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEE-C---S-SCEEEEE
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEe-C---C-CeEEEEE
Confidence 566665 66776554222 3489999999998877777655 5678899999976643 2 2 8999999
Q ss_pred CCCC
Q 003878 483 LKTE 486 (789)
Q Consensus 483 l~tg 486 (789)
.+++
T Consensus 332 ~~t~ 335 (361)
T 2oiz_A 332 ISQP 335 (361)
T ss_dssp CSSS
T ss_pred CCCC
Confidence 9998
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.71 E-value=2.6e-07 Score=110.54 Aligned_cols=248 Identities=14% Similarity=0.014 Sum_probs=149.6
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec-ccccccccccccCccceeeeeecccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYL 208 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (789)
+...+..+++||||++|+.+.. ..+|+|||+.++.... ..+... .+
T Consensus 8 H~~~V~~l~~s~dg~~latg~~-----dg~I~vwd~~~~~~~~~~~l~~h-------~~--------------------- 54 (753)
T 3jro_A 8 HNELIHDAVLDYYGKRLATCSS-----DKTIKIFEVEGETHKLIDTLTGH-------EG--------------------- 54 (753)
T ss_dssp CCCCEEEECCCSSSCCEEEEET-----TTEEEEEEEETTEEEEEEEECCC-------SS---------------------
T ss_pred CcceeEEEEECCCCCeEEEEEC-----CCcEEEEecCCCCCccceeccCC-------cC---------------------
Confidence 4456788999999999885532 3479999998543211 111111 00
Q ss_pred ccceeeEEEeeeccccceeeeeeecccccceEEEEeC--CcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCC
Q 003878 209 RGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHD--SKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ 286 (789)
Q Consensus 209 ~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspD--g~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~ 286 (789)
....++|+|+ |+.|+....+ ..|++|++.++.
T Consensus 55 ---------------------------~V~~l~~s~~~~~~~l~s~s~D-------------------g~I~vwd~~~~~ 88 (753)
T 3jro_A 55 ---------------------------PVWRVDWAHPKFGTILASCSYD-------------------GKVLIWKEENGR 88 (753)
T ss_dssp ---------------------------CEEEEEECCTTSCSEEEEEETT-------------------SCEEEEEEETTE
T ss_pred ---------------------------ceEEEEecCCCCCCEEEEEeCC-------------------CeEEEEECCCCc
Confidence 2578999998 8888766443 248888887643
Q ss_pred CCcEEEEecCCCCeeEEEEEEecC--CcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce-e
Q 003878 287 SEDILCWKDPEHPKYIFSGHVTED--GQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-Y 363 (789)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~SpD--G~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 363 (789)
......+. .+...+..+.|+|+ |+.++..+. ...|.++|+.++.. .....+....... .
T Consensus 89 ~~~~~~~~--~h~~~V~~v~~sp~~~~~~l~sgs~-----dg~I~vwdl~~~~~-----------~~~~~~~~~~~~v~~ 150 (753)
T 3jro_A 89 WSQIAVHA--VHSASVNSVQWAPHEYGPLLLVASS-----DGKVSVVEFKENGT-----------TSPIIIDAHAIGVNS 150 (753)
T ss_dssp EEEEEEEC--CCSSCEEEEEECCGGGCSEEEEEET-----TSEEEEEECCSSSC-----------CCCEEEECCSSCEEE
T ss_pred cccccccc--CCCCCeEEEEECCCCCCCEEEEEeC-----CCcEEEEEeecCCC-----------cceeEeecCCCceEE
Confidence 22222222 23445678999999 898887653 35688999887421 1111121111111 2
Q ss_pred EEEec-------------CCCEEEEEECCCCCCceEEEEECCCCCC-e---EEeccCCCCceeeeEEEecC---CEEEEE
Q 003878 364 EVIAN-------------DDTVFTFLTNKDAPKYKIIRVDLKEPND-W---FEVIPEAERDVLESATAVNL---NQMIVS 423 (789)
Q Consensus 364 ~~~s~-------------dG~~l~~~tn~~~~~~~L~~~dl~~~~~-~---~~l~~~~~~~~i~~v~~~~~---~~lv~~ 423 (789)
..|+| +|+.++..+. ++.|..+|+.++.. + ..+..+ ...+..+.++++ +.++++
T Consensus 151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~~~~l~s 224 (753)
T 3jro_A 151 ASWAPATIEEDGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYLAS 224 (753)
T ss_dssp EEECCCC---------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEE
T ss_pred EEecCcccccccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCC--CCcEEEEEeccCCCCCCEEEE
Confidence 33666 5776665443 35677788766531 1 222223 356888999987 688888
Q ss_pred EEeCCeEEEEEEECCCCcee--ee-ccc--CCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 424 YLSDVKYVLQIRDLKNGSLL--HQ-LPI--EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 424 ~~~~g~~~L~~~dl~tG~~~--~~-l~~--~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
...++ .|++||+.+++.. .. ... ..+.+..+.++++++.++... .-+.++.|++.++
T Consensus 225 ~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s----~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 225 VSQDR--TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG----GDNKVTLWKENLE 286 (753)
T ss_dssp EESSS--CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEEC----SSSCEECCBCCSS
T ss_pred EecCC--EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEc----CCCEEEEEecCCC
Confidence 88887 6888898765321 11 111 244566778899988665432 2457888887643
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.70 E-value=2.1e-05 Score=85.16 Aligned_cols=110 Identities=11% Similarity=0.176 Sum_probs=69.5
Q ss_pred cCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCC------------CCceeeeEEEecC-CEEEEEEEeC-------
Q 003878 368 NDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA------------ERDVLESATAVNL-NQMIVSYLSD------- 427 (789)
Q Consensus 368 ~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~------------~~~~i~~v~~~~~-~~lv~~~~~~------- 427 (789)
++| +++|.+. .++|+.+|+.+.. .+ ++... .....+.+.++++ +++|+....+
T Consensus 236 ~dG-~~~~vs~----~g~V~v~d~~~~~-~~-v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~ 308 (386)
T 3sjl_D 236 KAG-RLVWPTY----TGKIHQIDLSSGD-AK-FLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKT 308 (386)
T ss_dssp TTT-EEEEEBT----TSEEEEEECTTSS-CE-ECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTS
T ss_pred CCC-cEEEEeC----CCEEEEEECCCCc-ce-eecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCC
Confidence 566 4555555 2579999987654 11 11100 0011234566653 6787766542
Q ss_pred CeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 428 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 428 g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
...+|+++|+++++.++.+..+. .+.++.+++|++.++|..+ ..-..+..+|..+++
T Consensus 309 ~~~~V~viD~~t~kv~~~i~vg~-~~~~lavs~D~~~~ly~tn--~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 309 ASRFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLLYALS--TGDKTLYIHDAESGE 365 (386)
T ss_dssp CEEEEEEEETTTCCEEEEEEEEE-EECEEEECSSSSCEEEEEE--TTTTEEEEEETTTCC
T ss_pred CCCEEEEEECCCCeEEEEEECCC-CcceEEECCCCCeEEEEEc--CCCCeEEEEECCCCc
Confidence 24699999999999888887653 3446788999974444433 235689999999986
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.69 E-value=4e-06 Score=90.40 Aligned_cols=222 Identities=9% Similarity=0.008 Sum_probs=141.4
Q ss_pred EEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCC
Q 003878 215 FYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT 284 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~ 284 (789)
++++++..+|+..||.... ......++|+|||+.|+.... ...+.++++..
T Consensus 77 ~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~-------------------d~~i~v~~~~~ 137 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGL-------------------DNKCSVYPLTF 137 (354)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEEST-------------------TSEEEEEECCC
T ss_pred CEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeC-------------------CCCEEEEEEec
Confidence 4788899999999997543 112357899999998886522 23466666654
Q ss_pred CCC----CcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc
Q 003878 285 KQS----EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD 360 (789)
Q Consensus 285 ~~~----~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 360 (789)
... .....+.. +...+..+.|+|++++|+..+. ...|.++|+.++. ....+.....
T Consensus 138 ~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~t~s~-----D~~v~lwd~~~~~-------------~~~~~~~h~~ 197 (354)
T 2pbi_B 138 DKNENMAAKKKSVAM--HTNYLSACSFTNSDMQILTASG-----DGTCALWDVESGQ-------------LLQSFHGHGA 197 (354)
T ss_dssp CTTCCSGGGCEEEEE--CSSCEEEEEECSSSSEEEEEET-----TSEEEEEETTTCC-------------EEEEEECCSS
T ss_pred cccccccccceeeec--cCCcEEEEEEeCCCCEEEEEeC-----CCcEEEEeCCCCe-------------EEEEEcCCCC
Confidence 321 11122222 2334668899999999886553 3458899998742 1222222111
Q ss_pred cee-EEEec--CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEEC
Q 003878 361 AQY-EVIAN--DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 361 ~~~-~~~s~--dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl 437 (789)
... ..+++ +|+.|+..+ .++.|..+|+.+++....+..+. ..+..+.+++++.++++...++ .|++||+
T Consensus 198 ~v~~~~~~~~~~g~~l~sgs----~Dg~v~~wd~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~D~--~v~lwd~ 269 (354)
T 2pbi_B 198 DVLCLDLAPSETGNTFVSGG----CDKKAMVWDMRSGQCVQAFETHE--SDVNSVRYYPSGDAFASGSDDA--TCRLYDL 269 (354)
T ss_dssp CEEEEEECCCSSCCEEEEEE----TTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTS--CEEEEET
T ss_pred CeEEEEEEeCCCCCEEEEEe----CCCeEEEEECCCCcEEEEecCCC--CCeEEEEEeCCCCEEEEEeCCC--eEEEEEC
Confidence 111 22555 466666433 24679999998876333333333 5678899998777888888887 6888999
Q ss_pred CCCceeeecccC--CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 438 KNGSLLHQLPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 438 ~tG~~~~~l~~~--~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.+++....+... ...+..+.+++++..++.... -..+..||+.+++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~----d~~i~vwd~~~~~ 317 (354)
T 2pbi_B 270 RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN----DYTINVWDVLKGS 317 (354)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCS
T ss_pred CCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEEC----CCcEEEEECCCCc
Confidence 866553333322 234667888999987765443 3589999998875
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.2e-07 Score=106.07 Aligned_cols=201 Identities=10% Similarity=-0.004 Sum_probs=117.6
Q ss_pred cceEEEEeC------CcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC---------cEEEEecCCCCee
Q 003878 237 FSSIAWTHD------SKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE---------DILCWKDPEHPKY 301 (789)
Q Consensus 237 ~~~~~wspD------g~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~---------~~~~~~~~~~~~~ 301 (789)
...++|+|+ ++.|+-...+ ..|.+|++.+.... ....+... ...
T Consensus 210 V~~v~wsp~~~~~~~~~~LAs~s~D-------------------gtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h--~~~ 268 (524)
T 2j04_B 210 VWDLKWHEGCHAPHLVGCLSFVSQE-------------------GTINFLEIIDNATDVHVFKMCEKPSLTLSLA--DSL 268 (524)
T ss_dssp EEEEEECSSCCCSSSSCEEEEEETT-------------------SCEEEEECCCCSSSSSEEECCCSCSEEECCT--TTC
T ss_pred EEEEEECCCCCCCCCCceEEEEecC-------------------CeEEEEEcCCCccccccceeecCceEEEEcC--CCC
Confidence 467899997 4555544322 24788888654321 11122222 334
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeE---EEecCC-CEEEEEE
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE---VIANDD-TVFTFLT 377 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~s~dG-~~l~~~t 377 (789)
+.+++|++++ .|+..+. ...|.++|+.++. .+...+......... .++++| ..|+ ..
T Consensus 269 v~sv~~s~~~-~lasgs~-----DgtV~lWD~~~~~------------~~~~~~~~H~~~V~sv~~~~s~~g~~~la-S~ 329 (524)
T 2j04_B 269 ITTFDFLSPT-TVVCGFK-----NGFVAEFDLTDPE------------VPSFYDQVHDSYILSVSTAYSDFEDTVVS-TV 329 (524)
T ss_dssp EEEEEESSSS-EEEEEET-----TSEEEEEETTBCS------------SCSEEEECSSSCEEEEEEECCTTSCCEEE-EE
T ss_pred EEEEEecCCC-eEEEEeC-----CCEEEEEECCCCC------------CceEEeecccccEEEEEEEcCCCCCeEEE-Ee
Confidence 6789999875 5554432 3568999998641 112222222222222 256777 4444 33
Q ss_pred CCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEee
Q 003878 378 NKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAIS 457 (789)
Q Consensus 378 n~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s 457 (789)
. .+..|.++|+.+++....+..+.....+..+++++++..+++...++ .|.+||+.++.....+....+.|..++
T Consensus 330 S---~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~--tv~lwd~~~~~~~~~l~gH~~~V~sva 404 (524)
T 2j04_B 330 A---VDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGAS--SLRAVPSRAAFAVHPLVSRETTITAIG 404 (524)
T ss_dssp E---TTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSS--EEEEEETTCTTCCEEEEECSSCEEEEE
T ss_pred c---cCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCC--cEEEEECcccccceeeecCCCceEEEE
Confidence 2 24678899987654222333333222356788998655666666665 689999987776555555667788899
Q ss_pred cccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 458 ARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 458 ~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
++|+++.++ +.+ .-.++..||+..+
T Consensus 405 ~Sp~g~~l~-Sgs---~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 405 VSRLHPMVL-AGS---ADGSLIITNAARR 429 (524)
T ss_dssp CCSSCCBCE-EEE---TTTEEECCBSCSS
T ss_pred eCCCCCeEE-EEE---CCCEEEEEechHh
Confidence 999998654 322 3457888886543
|
| >1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-07 Score=101.15 Aligned_cols=120 Identities=16% Similarity=0.054 Sum_probs=84.6
Q ss_pred eEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchH
Q 003878 520 TKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCF 599 (789)
Q Consensus 520 ~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~ 599 (789)
.++...++.|++.. .+..+.||++||..+.... .|...+...|.++||.|+.+|+||.|.-. .....
T Consensus 14 ~~l~~~i~~p~~~~-~~~~~~VvllHG~~~~~~~-~~~~~l~~~L~~~G~~v~~~d~~g~g~~~-----------~~~~~ 80 (317)
T 1tca_A 14 SVLDAGLTCQGASP-SSVSKPILLVPGTGTTGPQ-SFDSNWIPLSTQLGYTPCWISPPPFMLND-----------TQVNT 80 (317)
T ss_dssp HHHHHTEEETTBCT-TSCSSEEEEECCTTCCHHH-HHTTTHHHHHHTTTCEEEEECCTTTTCSC-----------HHHHH
T ss_pred HHHhheeeCCCCCC-CCCCCeEEEECCCCCCcch-hhHHHHHHHHHhCCCEEEEECCCCCCCCc-----------HHHHH
Confidence 45556677787653 3445678999998765432 12212456677689999999999864311 11235
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC---CceeEEEecCCccc
Q 003878 600 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRP---DLFGCALAHVGVMD 654 (789)
Q Consensus 600 ~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p---d~f~a~v~~~p~~d 654 (789)
+++.+.++++.+.. ..+++.++|||+||+++..++.++| ++++++|+..|..+
T Consensus 81 ~~l~~~i~~~~~~~--g~~~v~lVGhS~GG~va~~~~~~~~~~~~~v~~lV~l~~~~~ 136 (317)
T 1tca_A 81 EYMVNAITALYAGS--GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 136 (317)
T ss_dssp HHHHHHHHHHHHHT--TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred HHHHHHHHHHHHHh--CCCCEEEEEEChhhHHHHHHHHHcCccchhhhEEEEECCCCC
Confidence 67788888887652 2368999999999999998888765 78999999887654
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-06 Score=95.83 Aligned_cols=240 Identities=10% Similarity=0.045 Sum_probs=139.3
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccccee
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFF 213 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 213 (789)
+..+++||||++||. |+....+++||+.++.......... ..+..|.++ ..+..+.|+..
T Consensus 111 v~~~~~s~~g~~las-----~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~gh~~~----v~~~~~~~~~~---------- 170 (380)
T 3iz6_a 111 VMECAFAPNGQSVAC-----GGLDSACSIFNLSSQADRDGNMPVS-RVLTGHKGY----ASSCQYVPDQE---------- 170 (380)
T ss_dssp CCCCEECTTSSEEEE-----CCSSSCCEEEECCCCSSCCCSSTTC-CBCCCCSSC----CCCCBCCSSSS----------
T ss_pred EEEEEECCCCCEEEE-----eeCCCcEEEEECCCCccccCCccce-eeccCCCcc----eEEEEEecCCC----------
Confidence 456789999999983 4445689999998753211100000 000111110 11112233321
Q ss_pred eEEEeeeccccceeeeeeec---------------ccccceEEEEe-CCcEEEEEEccCCCCCCCCCCCccccCCcccEE
Q 003878 214 FFYLFSLVKSTIYSFWSVVS---------------QFKFSSIAWTH-DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEF 277 (789)
Q Consensus 214 ~~~~~~s~~~g~~~l~~~~~---------------~~~~~~~~wsp-Dg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i 277 (789)
..++++..+|+..+|.+.. ......++|+| |++.|+-... ...|
T Consensus 171 -~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~-------------------D~~v 230 (380)
T 3iz6_a 171 -TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC-------------------DTTV 230 (380)
T ss_dssp -SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEET-------------------TSCE
T ss_pred -CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEEC-------------------CCeE
Confidence 3577888999999997643 01124567766 6666554432 2358
Q ss_pred EEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec
Q 003878 278 YYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID 357 (789)
Q Consensus 278 ~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~ 357 (789)
.+|++..... ....+... ...+..+.|+|||++|+..+.+ ..|.++|+.++.. ......
T Consensus 231 ~~wd~~~~~~-~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D-----~~i~lwd~~~~~~-------------~~~~~~ 289 (380)
T 3iz6_a 231 RLWDLRITSR-AVRTYHGH--EGDINSVKFFPDGQRFGTGSDD-----GTCRLFDMRTGHQ-------------LQVYNR 289 (380)
T ss_dssp EEEETTTTCC-CCEEECCC--SSCCCEEEECTTSSEEEEECSS-----SCEEEEETTTTEE-------------EEEECC
T ss_pred EEEECCCCCc-ceEEECCc--CCCeEEEEEecCCCeEEEEcCC-----CeEEEEECCCCcE-------------EEEecc
Confidence 8899864322 22333332 3345678999999998765432 3488899887420 111100
Q ss_pred c-------c-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEecc--CCCCceeeeEEEecCCEEEEEEEeC
Q 003878 358 G-------F-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP--EAERDVLESATAVNLNQMIVSYLSD 427 (789)
Q Consensus 358 ~-------~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~--~~~~~~i~~v~~~~~~~lv~~~~~~ 427 (789)
. . ...-..|+|+|+.|+..+ .++.|..+|+..++....+.. ......+..+++++++..+++...|
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~----~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D 365 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGY----SNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWD 365 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEEC----TTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTT
T ss_pred cccccccccCceEEEEECCCCCEEEEEE----CCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCC
Confidence 0 0 011234899999877532 346799999887762233311 2223567889999877888888888
Q ss_pred CeEEEEEEECCCC
Q 003878 428 VKYVLQIRDLKNG 440 (789)
Q Consensus 428 g~~~L~~~dl~tG 440 (789)
+ .|.+|++.++
T Consensus 366 ~--~i~iW~~~~~ 376 (380)
T 3iz6_a 366 K--NLKIWAFSGH 376 (380)
T ss_dssp S--CEEEEECCSS
T ss_pred C--CEEEEecCCC
Confidence 7 6888998743
|
| >3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.3e-08 Score=115.21 Aligned_cols=130 Identities=22% Similarity=0.230 Sum_probs=86.7
Q ss_pred cCCCceEEEEEEEecCCCC---CCCCccEEEEEcCCCCccCC-CCCCHHHHHHHHcCCeEEEEEeecCCC-CCChhHHhc
Q 003878 515 SKDGSTKIPMFIVSKKNIK---LDGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGG-EYGEEWHKG 589 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~---~~~~~P~ll~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~RG~g-~~g~~~~~~ 589 (789)
+.|. +.+.++.|+... ..++.|+||++|||...... ..+.. ..+....|++|+.+|||.+. +|... .
T Consensus 108 sEdc---L~l~v~~P~~~~~~~~~~~~Pv~v~iHGGg~~~g~~~~~~~--~~la~~~~~vvv~~~YRl~~~Gfl~~---~ 179 (574)
T 3bix_A 108 SEDC---LYLNIYVPTEDDIRDSGGPKPVMVYIHGGSYMEGTGNLYDG--SVLASYGNVIVITVNYRLGVLGFLST---G 179 (574)
T ss_dssp CSCC---CEEEEEEEC--------CCEEEEEECCCSSSSSCCGGGSCC--HHHHHHHTCEEEEECCCCHHHHHCCC---S
T ss_pred CCcC---CEEEEEECCCCCcCCCCCCCcEEEEECCCcccCCCCCccCc--hhhhccCCEEEEEeCCcCcccccCcC---C
Confidence 4565 555677887532 23578999999998543332 23443 23444347999999999643 11100 0
Q ss_pred ccccCCcchHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhCC---CceeEEEecCCc
Q 003878 590 GALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQRP---DLFGCALAHVGV 652 (789)
Q Consensus 590 ~~~~~~~~~~~D~~~~~~~L~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~p---d~f~a~v~~~p~ 652 (789)
.....+...+.|.+++++|+.++- -.||+||.|+|.|+||.+++.++.... .+|+++|+++|.
T Consensus 180 ~~~~~~n~gl~D~~~al~wv~~ni~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~glf~~aI~~Sg~ 248 (574)
T 3bix_A 180 DQAAKGNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQSGT 248 (574)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTCTTSCTTSCCEEEEESCC
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHhCCCchhEEEEeecccHHHHHHHhhCCCcchhHHHHHHHhcCC
Confidence 001223456899999999998862 369999999999999999998887543 589999998863
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=98.66 E-value=6.7e-07 Score=94.83 Aligned_cols=248 Identities=14% Similarity=0.026 Sum_probs=137.0
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec-ccccccccccccCccceeeeeecccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYL 208 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (789)
+.-.|..+++||||++||-+ +...+|+|||+.++.... ..+... .+
T Consensus 12 H~~~V~~v~~s~~g~~lasg-----s~D~~v~lwd~~~~~~~~~~~l~gH-------~~--------------------- 58 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGTRLATC-----SSDRSVKIFDVRNGGQILIADLRGH-------EG--------------------- 58 (316)
T ss_dssp --CCEEEEEECGGGCEEEEE-----ETTTEEEEEEEETTEEEEEEEEECC-------SS---------------------
T ss_pred ccCeEEEeeEcCCCCEEEEE-----eCCCeEEEEEecCCCcEEEEEEcCC-------Cc---------------------
Confidence 33457889999999999843 334589999998874321 112211 00
Q ss_pred ccceeeEEEeeeccccceeeeeeecccccceEEEEeC--CcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCC
Q 003878 209 RGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHD--SKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ 286 (789)
Q Consensus 209 ~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspD--g~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~ 286 (789)
....++|+|+ |+.|+-...+ ..|.+|++.++.
T Consensus 59 ---------------------------~V~~v~~~~~~~~~~l~s~s~D-------------------~~v~iWd~~~~~ 92 (316)
T 3bg1_A 59 ---------------------------PVWQVAWAHPMYGNILASCSYD-------------------RKVIIWREENGT 92 (316)
T ss_dssp ---------------------------CEEEEEECCGGGSSCEEEEETT-------------------SCEEEECCSSSC
T ss_pred ---------------------------cEEEEEeCCCCCCCEEEEEECC-------------------CEEEEEECCCCc
Confidence 2467899864 7777655332 348888887643
Q ss_pred CCcEEEEecCCCCeeEEEEEEecC--CcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc--cce
Q 003878 287 SEDILCWKDPEHPKYIFSGHVTED--GQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF--DAQ 362 (789)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~SpD--G~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~--~~~ 362 (789)
.+....+.. +...+..+.|+|| |.+|+..+.+ ..|.++++.++.. . .......+. ...
T Consensus 93 ~~~~~~~~~--h~~~V~~v~~~p~~~g~~lasgs~D-----~~i~lwd~~~~~~-~----------~~~~~~~~h~~~v~ 154 (316)
T 3bg1_A 93 WEKSHEHAG--HDSSVNSVCWAPHDYGLILACGSSD-----GAISLLTYTGEGQ-W----------EVKKINNAHTIGCN 154 (316)
T ss_dssp CCEEEEECC--CSSCCCEEEECCTTTCSCEEEECSS-----SCEEEEEECSSSC-E----------EECCBTTSSSSCBC
T ss_pred ceEEEEccC--CCCceEEEEECCCCCCcEEEEEcCC-----CCEEEEecCCCCC-c----------ceeeeeccccCCcc
Confidence 232333332 3334567899998 7777654432 3477777765310 0 000000000 001
Q ss_pred eEEEecC-----------------CCEEEEEECCCCCCceEEEEECCCCCCeEEecc-CCCCceeeeEEEecCC----EE
Q 003878 363 YEVIAND-----------------DTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP-EAERDVLESATAVNLN----QM 420 (789)
Q Consensus 363 ~~~~s~d-----------------G~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~-~~~~~~i~~v~~~~~~----~l 420 (789)
...|+|+ ++.|+ + .+.+..|..+|+.+...++.+.. ......+..+.+++++ .+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--s--gs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~ 230 (316)
T 3bg1_A 155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFA--S--GGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTST 230 (316)
T ss_dssp CCEECCCCCC------CCSCCCCCCCBEE--C--CBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCE
T ss_pred eEEEccccCCccccccccccCccccceEE--E--ecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCce
Confidence 1235554 23333 1 12345667777764422322211 1112467889998853 67
Q ss_pred EEEEEeCCeEEEEEEECCCCc---e-eeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 421 IVSYLSDVKYVLQIRDLKNGS---L-LHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 421 v~~~~~~g~~~L~~~dl~tG~---~-~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
+++...|+ .|++|+++++. . .+.+......+..++++|+++.|+.... -..+.+|+..
T Consensus 231 las~s~D~--~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~----D~~v~lw~~~ 292 (316)
T 3bg1_A 231 IASCSQDG--RVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG----DNKVTLWKES 292 (316)
T ss_dssp EEEEETTC--EEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES----SSCEEEEEEC
T ss_pred EEEEcCCC--eEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC----CCeEEEEEEC
Confidence 88888887 78889987521 1 1222222456778899999987664322 3456667654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.65 E-value=5.7e-06 Score=90.24 Aligned_cols=216 Identities=18% Similarity=0.120 Sum_probs=138.0
Q ss_pred EEeeeccccceeeeee----ec-c------------c-------------ccceEEEEeCCcEEEEEEccCCCCCCCCCC
Q 003878 216 YLFSLVKSTIYSFWSV----VS-Q------------F-------------KFSSIAWTHDSKGFFYSRYPAPKEGKDMDA 265 (789)
Q Consensus 216 ~~~~s~~~g~~~l~~~----~~-~------------~-------------~~~~~~wspDg~~i~y~~~~~~~~~~~~~~ 265 (789)
+++++..+|...+|.+ .. . . ....++|+|||+.|+....+
T Consensus 60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------- 129 (425)
T 1r5m_A 60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVEN---------- 129 (425)
T ss_dssp EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETT----------
T ss_pred EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCC----------
Confidence 6778888899999988 21 1 1 34678999999999876433
Q ss_pred CccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccc
Q 003878 266 GTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 345 (789)
Q Consensus 266 ~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 345 (789)
..|++|+.. .+....+. .+...+..+.|+|||++|+....+ ..|.++|+.++..
T Consensus 130 ---------g~i~i~~~~---~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~------- 183 (425)
T 1r5m_A 130 ---------GELRLWNKT---GALLNVLN--FHRAPIVSVKWNKDGTHIISMDVE-----NVTILWNVISGTV------- 183 (425)
T ss_dssp ---------SCEEEEETT---SCEEEEEC--CCCSCEEEEEECTTSSEEEEEETT-----CCEEEEETTTTEE-------
T ss_pred ---------CeEEEEeCC---CCeeeecc--CCCccEEEEEECCCCCEEEEEecC-----CeEEEEECCCCcE-------
Confidence 247777732 22223333 233446789999999999876532 4488889876420
Q ss_pred cCCCCccEeeecccc----------------ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCcee
Q 003878 346 RDGLLPFVKLIDGFD----------------AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVL 409 (789)
Q Consensus 346 ~~~~~~~~~l~~~~~----------------~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i 409 (789)
...+..... .....|++++ .++..+ .++.|..+|+.+++....+..+. ..+
T Consensus 184 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~g~i~~~d~~~~~~~~~~~~~~--~~i 250 (425)
T 1r5m_A 184 ------MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPG----PKGAIFVYQITEKTPTGKLIGHH--GPI 250 (425)
T ss_dssp ------EEEECCC---------------CCCBSCCEEEETT-EEEEEC----GGGCEEEEETTCSSCSEEECCCS--SCE
T ss_pred ------EEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEc----CCCeEEEEEcCCCceeeeeccCC--Cce
Confidence 111100000 1112367764 344322 34679999998876334443333 567
Q ss_pred eeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 410 ESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 410 ~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
..+.+++++.++++...++ .|++||+.+++....+......+..+.+++++ .++ +.+ .-+.++.||+.+++
T Consensus 251 ~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~-~~~---~d~~i~i~d~~~~~ 321 (425)
T 1r5m_A 251 SVLEFNDTNKLLLSASDDG--TLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVI-SCS---MDGSVRLWSLKQNT 321 (425)
T ss_dssp EEEEEETTTTEEEEEETTS--CEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEE-EEE---TTSEEEEEETTTTE
T ss_pred EEEEECCCCCEEEEEcCCC--EEEEEECCCCccceEecCCCccEEEEEECCCC-EEE-EEe---CCCcEEEEECCCCc
Confidence 8899998666777777776 68999998777656665556677788899888 333 332 24689999998874
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.1e-06 Score=104.65 Aligned_cols=208 Identities=12% Similarity=0.019 Sum_probs=125.8
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
.+..+++||||++||.+.. ..+|+|||..+++.+.. +... +
T Consensus 19 ~V~~lafspdg~~lAsgs~-----Dg~I~lw~~~~~~~~~~-~~~~--------~------------------------- 59 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATV-----TGEVHIYGQQQVEVVIK-LEDR--------S------------------------- 59 (902)
T ss_dssp CEEEEEEETTTTEEEEEET-----TSEEEEECSTTCEEEEE-CSSC--------C-------------------------
T ss_pred CcEEEEECCCCCEEEEEeC-----CCEEEEEeCCCcEEEEE-cCCC--------C-------------------------
Confidence 4778999999999996442 34899999887654321 1110 0
Q ss_pred eeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 292 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~ 292 (789)
.+..++|+| |+.|+-... ...|.+|++.++.. +..
T Consensus 60 -----------------------~V~~l~fsp-g~~L~S~s~-------------------D~~v~lWd~~~~~~--~~~ 94 (902)
T 2oaj_A 60 -----------------------AIKEMRFVK-GIYLVVINA-------------------KDTVYVLSLYSQKV--LTT 94 (902)
T ss_dssp -----------------------CEEEEEEET-TTEEEEEET-------------------TCEEEEEETTTCSE--EEE
T ss_pred -----------------------CEEEEEEcC-CCEEEEEEC-------------------cCeEEEEECCCCcE--EEE
Confidence 257899999 886654432 34689999976532 223
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCcc---Eeeeccccc-eeEEEec
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPF---VKLIDGFDA-QYEVIAN 368 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~---~~l~~~~~~-~~~~~s~ 368 (789)
+.. ...+..++|+|||++|+....+ ..|.++|+.++... .+.- ...+ ..+...... .-..|+|
T Consensus 95 ~~~---~~~V~~v~~sp~g~~l~sgs~d-----g~V~lwd~~~~~~~--~~~i---~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 95 VFV---PGKITSIDTDASLDWMLIGLQN-----GSMIVYDIDRDQLS--SFKL---DNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp EEC---SSCEEEEECCTTCSEEEEEETT-----SCEEEEETTTTEEE--EEEE---CCHHHHHTCSSSCCCCCCEEEEET
T ss_pred EcC---CCCEEEEEECCCCCEEEEEcCC-----CcEEEEECCCCccc--ccee---ccccccccccccCCCCeEEEEEcc
Confidence 332 2346789999999999877643 34888999874200 0000 0000 000001111 1234888
Q ss_pred CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccC----------------CCCceeeeEEEecCCEEEEEEEeCCeEEE
Q 003878 369 DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPE----------------AERDVLESATAVNLNQMIVSYLSDVKYVL 432 (789)
Q Consensus 369 dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~----------------~~~~~i~~v~~~~~~~lv~~~~~~g~~~L 432 (789)
++..+++... .++.| .+|+.+++....+..+ .....+..++|++++..+++...|+ .|
T Consensus 162 ~~~~~l~~g~---~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg--~i 235 (902)
T 2oaj_A 162 RDIGTVLISY---EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN--SL 235 (902)
T ss_dssp TEEEEEEEEC---SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC--CE
T ss_pred CCCCEEEEEe---CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCC--eE
Confidence 6544444433 34678 9999876522333222 0014578899999778888888887 68
Q ss_pred EEEECCCCcee
Q 003878 433 QIRDLKNGSLL 443 (789)
Q Consensus 433 ~~~dl~tG~~~ 443 (789)
++||+.+|+.+
T Consensus 236 ~lWd~~~g~~~ 246 (902)
T 2oaj_A 236 VFWDANSGHMI 246 (902)
T ss_dssp EEEETTTCCEE
T ss_pred EEEECCCCcEE
Confidence 99999888753
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.6e-06 Score=91.20 Aligned_cols=157 Identities=8% Similarity=0.039 Sum_probs=94.9
Q ss_pred eEEEEEEec--CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc--ceeEEEecCCCEEEEE
Q 003878 301 YIFSGHVTE--DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD--AQYEVIANDDTVFTFL 376 (789)
Q Consensus 301 ~~~~~~~Sp--DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~s~dG~~l~~~ 376 (789)
.+..+.++| +|++++..+.+ ..|.++|+.++. .......... ..-..|+|||..|+.-
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~-------------~~~~~~~~~~~~i~~~~~~pdg~~lasg 188 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADNR-----GTIGFQSYEDDS-------------QYIVHSAKSDVEYSSGVLHKDSLLLALY 188 (343)
T ss_dssp CEEEEECCC---CCEEEEEETT-----CCEEEEESSSSC-------------EEEEECCCSSCCCCEEEECTTSCEEEEE
T ss_pred CEEEEEcCCCCCCCEEEEEeCC-----CcEEEEECCCCc-------------EEEEEecCCCCceEEEEECCCCCEEEEE
Confidence 356789999 99998866533 448899998742 1111111111 1223589999877643
Q ss_pred ECCCCCCceEEEEECCCCCCe-EEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc---CCee
Q 003878 377 TNKDAPKYKIIRVDLKEPNDW-FEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI---EIGS 452 (789)
Q Consensus 377 tn~~~~~~~L~~~dl~~~~~~-~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~---~~~~ 452 (789)
+ .++.|..+|+.+++.. ..+.. .....+..+.+++++..+++..++ .|.+||+.+++....+.. +...
T Consensus 189 ~----~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~~~---~v~iwd~~~~~~~~~~~~~~~~~~~ 260 (343)
T 3lrv_A 189 S----PDGILDVYNLSSPDQASSRFPV-DEEAKIKEVKFADNGYWMVVECDQ---TVVCFDLRKDVGTLAYPTYTIPEFK 260 (343)
T ss_dssp C----TTSCEEEEESSCTTSCCEECCC-CTTSCEEEEEECTTSSEEEEEESS---BEEEEETTSSTTCBSSCCCBC----
T ss_pred c----CCCEEEEEECCCCCCCccEEec-cCCCCEEEEEEeCCCCEEEEEeCC---eEEEEEcCCCCcceeeccccccccc
Confidence 2 3467999999887633 33433 123578899999876677766643 799999987765433332 1122
Q ss_pred E--EEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 453 V--NAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 453 v--~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
+ ..++++++++.++.... .-..+..|++.++
T Consensus 261 ~~~~~~~~~~~g~~l~~~s~---~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 261 TGTVTYDIDDSGKNMIAYSN---ESNSLTIYKFDKK 293 (343)
T ss_dssp -CCEEEEECTTSSEEEEEET---TTTEEEEEEECTT
T ss_pred ccceEEEECCCCCEEEEecC---CCCcEEEEEEccc
Confidence 2 24788999987664332 1235677776544
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.7e-06 Score=94.08 Aligned_cols=247 Identities=9% Similarity=-0.011 Sum_probs=139.6
Q ss_pred CcEEEEeEEeCC-CCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccc
Q 003878 130 GTAALIKVSVSE-DAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYL 208 (789)
Q Consensus 130 ~~~~~~~~~~Sp-Dg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (789)
+...+..+.++| ++++|+.+ ... ..|++||+.+++.+... ... +....+..++.. +++
T Consensus 98 ~~~~v~~~~~~~~~~~~l~s~-~~d----~~i~iwd~~~~~~~~~~-~~~--------~~~~~~~~~~~~-~~~------ 156 (408)
T 4a11_B 98 HRYSVETVQWYPHDTGMFTSS-SFD----KTLKVWDTNTLQTADVF-NFE--------ETVYSHHMSPVS-TKH------ 156 (408)
T ss_dssp CSSCEEEEEECTTCTTCEEEE-ETT----SEEEEEETTTTEEEEEE-ECS--------SCEEEEEECSSC-SSC------
T ss_pred CCCcEEEEEEccCCCcEEEEE-eCC----CeEEEeeCCCCccceec-cCC--------CceeeeEeecCC-CCC------
Confidence 345688899999 66666643 323 37999999998654311 100 000011111111 111
Q ss_pred ccceeeEEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEE
Q 003878 209 RGIFFFFYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFY 278 (789)
Q Consensus 209 ~~~~~~~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (789)
.+++++..+|...+|.+.. .-....++|+||++.++++... ...|+
T Consensus 157 ------~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~------------------dg~i~ 212 (408)
T 4a11_B 157 ------CLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASA------------------DSRVK 212 (408)
T ss_dssp ------CEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEET------------------TSCEE
T ss_pred ------cEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcC------------------CCcEE
Confidence 3677888889999998764 1223578999999976555332 22477
Q ss_pred EEECCCCCCCcEEEEec-------------CCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccc
Q 003878 279 YHFLGTKQSEDILCWKD-------------PEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK 345 (789)
Q Consensus 279 ~~~lg~~~~~~~~~~~~-------------~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 345 (789)
++++.+..... ..+.. ..+...+..+.|+|||++|+....+ ..|.++|+.++.... .+.
T Consensus 213 i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~-~~~- 284 (408)
T 4a11_B 213 LWDVRRASGCL-ITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTD-----NRMRLWNSSNGENTL-VNY- 284 (408)
T ss_dssp EEETTCSSCCS-EECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCBCC-CCC-
T ss_pred EEECCCCCccc-ccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCC-----CeEEEEECCCCccce-ecc-
Confidence 88876543211 11100 1223446789999999999876643 348899998753110 000
Q ss_pred cCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEE
Q 003878 346 RDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYL 425 (789)
Q Consensus 346 ~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~ 425 (789)
.. . ................+..+++.+. +..|..+|+.+++....+..+. ..+..+.+++++.++++..
T Consensus 285 ---~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~v~d~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~s~~ 353 (408)
T 4a11_B 285 ---GK-V-CNNSKKGLKFTVSCGCSSEFVFVPY----GSTIAVYTVYSGEQITMLKGHY--KTVDCCVFQSNFQELYSGS 353 (408)
T ss_dssp ---CC-C-CCCCSSCCCCEECCSSSSCEEEEEE----TTEEEEEETTTCCEEEEECCCS--SCEEEEEEETTTTEEEEEE
T ss_pred ---cc-c-cccccccceeEEecCCCceEEEEec----CCEEEEEECcCCcceeeeccCC--CeEEEEEEcCCCCEEEEEC
Confidence 00 0 0000001111212223344444433 3579999998876344443333 5678899998777888888
Q ss_pred eCCeEEEEEEECCCCce
Q 003878 426 SDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 426 ~~g~~~L~~~dl~tG~~ 442 (789)
.++ .|.+|++++++.
T Consensus 354 ~dg--~i~iw~~~~~~~ 368 (408)
T 4a11_B 354 RDC--NILAWVPSLYEP 368 (408)
T ss_dssp TTS--CEEEEEECC---
T ss_pred CCC--eEEEEeCCCCCc
Confidence 887 688899987664
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.61 E-value=4.4e-06 Score=93.16 Aligned_cols=208 Identities=13% Similarity=0.103 Sum_probs=123.2
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEe--cCCcEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVT--EDGQYL 314 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~S--pDG~~l 314 (789)
...++|+||+ .|+.... ...|.+|++.++. ....+... ...+..+.++ ++++++
T Consensus 165 V~~l~~~~~~-~l~s~s~-------------------dg~i~vwd~~~~~--~~~~~~~h--~~~v~~l~~~~~~~~~~l 220 (464)
T 3v7d_B 165 VWALKYAHGG-ILVSGST-------------------DRTVRVWDIKKGC--CTHVFEGH--NSTVRCLDIVEYKNIKYI 220 (464)
T ss_dssp EEEEEECSTT-EEEEEET-------------------TSCEEEEETTTTE--EEEEECCC--SSCEEEEEEEESSSCEEE
T ss_pred EEEEEEcCCC-EEEEEeC-------------------CCCEEEEECCCCc--EEEEECCC--CCccEEEEEecCCCCCEE
Confidence 5788999988 4443322 2358889987653 23333332 3335556666 688888
Q ss_pred EEEEEcCCCCceEEEEEECCCCCCCccccccc---------CCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCce
Q 003878 315 VMCIEENCDPVNKVYYCDLSALPEGLEGFKKR---------DGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYK 385 (789)
Q Consensus 315 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~ 385 (789)
+..+.+ ..|.++|+.++.......... ...........+.......++++++.++..+. ++.
T Consensus 221 ~s~s~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~----d~~ 291 (464)
T 3v7d_B 221 VTGSRD-----NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY----DNT 291 (464)
T ss_dssp EEEETT-----SCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEET----TSC
T ss_pred EEEcCC-----CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeC----CCe
Confidence 766533 348888887642110000000 00000011112222223346788888776543 357
Q ss_pred EEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEE
Q 003878 386 IIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVV 465 (789)
Q Consensus 386 L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l 465 (789)
|..+|+.+++....+..+. ..+..+.+++++..+++...++ .|++||+.+|+....+..+...+..+.++ ++.+
T Consensus 292 i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~sg~~dg--~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l 365 (464)
T 3v7d_B 292 LIVWDVAQMKCLYILSGHT--DRIYSTIYDHERKRCISASMDT--TIRIWDLENGELMYTLQGHTALVGLLRLS--DKFL 365 (464)
T ss_dssp EEEEETTTTEEEEEECCCS--SCEEEEEEETTTTEEEEEETTS--CEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEE
T ss_pred EEEEECCCCcEEEEecCCC--CCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEE
Confidence 9999998775333343333 5678899998667777888877 68999998888767776666667677765 4444
Q ss_pred EEEEcCCCCCcEEEEEECCCCC
Q 003878 466 FISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 466 ~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+ +.+ .-+.+..||+.+++
T Consensus 366 ~-s~s---~dg~v~vwd~~~~~ 383 (464)
T 3v7d_B 366 V-SAA---ADGSIRGWDANDYS 383 (464)
T ss_dssp E-EEE---TTSEEEEEETTTCC
T ss_pred E-EEe---CCCcEEEEECCCCc
Confidence 3 332 24689999998874
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.6e-05 Score=85.34 Aligned_cols=268 Identities=12% Similarity=0.077 Sum_probs=156.2
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..+..+.++ ++.|+.+. . ..+|++||+.+++.+. .+... .+....+.
T Consensus 160 ~~v~~~~~~--~~~l~s~~-~----dg~i~vwd~~~~~~~~-~~~~h-------~~~v~~~~------------------ 206 (445)
T 2ovr_B 160 GGVWSSQMR--DNIIISGS-T----DRTLKVWNAETGECIH-TLYGH-------TSTVRCMH------------------ 206 (445)
T ss_dssp SCEEEEEEE--TTEEEEEE-T----TSCEEEEETTTTEEEE-EECCC-------SSCEEEEE------------------
T ss_pred CCEEEEEec--CCEEEEEe-C----CCeEEEEECCcCcEEE-EECCC-------CCcEEEEE------------------
Confidence 345566665 55665432 2 3479999999986543 11111 00000000
Q ss_pred eeeEEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHF 281 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (789)
+.-..++++..+|...+|.+.. ......++| ||+.|+....+ ..|.+++
T Consensus 207 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d-------------------g~i~iwd 265 (445)
T 2ovr_B 207 LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYD-------------------FMVKVWD 265 (445)
T ss_dssp EETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETT-------------------SCEEEEE
T ss_pred ecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCC-------------------CEEEEEE
Confidence 0113477788899999998754 111233444 77777655332 3478888
Q ss_pred CCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc
Q 003878 282 LGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA 361 (789)
Q Consensus 282 lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (789)
+.+.. ....+. .+...+..+.+ ||++++....+ ..|.++|+.++. ....+ .+...
T Consensus 266 ~~~~~--~~~~~~--~~~~~v~~~~~--~~~~l~~~~~d-----~~i~i~d~~~~~-------------~~~~~-~~~~~ 320 (445)
T 2ovr_B 266 PETET--CLHTLQ--GHTNRVYSLQF--DGIHVVSGSLD-----TSIRVWDVETGN-------------CIHTL-TGHQS 320 (445)
T ss_dssp GGGTE--EEEEEC--CCSSCEEEEEE--CSSEEEEEETT-----SCEEEEETTTCC-------------EEEEE-CCCCS
T ss_pred CCCCc--EeEEec--CCCCceEEEEE--CCCEEEEEeCC-----CeEEEEECCCCC-------------EEEEE-cCCcc
Confidence 76542 122222 23333555655 89998776543 448899998742 12222 22122
Q ss_pred eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCC-CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCC
Q 003878 362 QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA-ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNG 440 (789)
Q Consensus 362 ~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~-~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG 440 (789)
....++.+++.++..+. ++.|..+|+.+++....+..+. ....+..+.+.+ .++++...++ .|.+||+.+|
T Consensus 321 ~v~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg--~v~iwd~~~~ 392 (445)
T 2ovr_B 321 LTSGMELKDNILVSGNA----DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDG--TVKLWDLKTG 392 (445)
T ss_dssp CEEEEEEETTEEEEEET----TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS--SEEEEEETTS--EEEEEETTTC
T ss_pred cEEEEEEeCCEEEEEeC----CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC--CEEEEEeCCC--eEEEEECCCC
Confidence 22335567776665432 3579999998876334443211 234577787754 5666677776 7999999988
Q ss_pred ceeeecc-----cCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 441 SLLHQLP-----IEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 441 ~~~~~l~-----~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
+....+. ...+.+..+.+++++..++.....-..+..++.+|+...
T Consensus 393 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 393 EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred ceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 8766652 235678888999888766655544445778888887643
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.7e-05 Score=86.28 Aligned_cols=77 Identities=12% Similarity=0.049 Sum_probs=51.5
Q ss_pred EEecCCCEEEEEECCC------CCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCE-EEEEEEeCCeEEEEEEEC
Q 003878 365 VIANDDTVFTFLTNKD------APKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~------~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl 437 (789)
.+++||+++|+..+.. .....|.++|+++.+....+ +-. ....++.++++++ +++.... +...|.++|.
T Consensus 273 ~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i-~~g--~~p~~i~~s~Dg~~~l~v~~~-~~~~V~ViD~ 348 (373)
T 2mad_H 273 AYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI-SLG--HDVDAISVAQDGGPDLYALSA-GTEVLHIYDA 348 (373)
T ss_pred EECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEE-ECC--CCcCeEEECCCCCeEEEEEcC-CCCeEEEEEC
Confidence 4789999999876532 12468999999987633333 322 2346788888655 5555442 2358999999
Q ss_pred CCCceeee
Q 003878 438 KNGSLLHQ 445 (789)
Q Consensus 438 ~tG~~~~~ 445 (789)
++++.+..
T Consensus 349 ~t~~vv~~ 356 (373)
T 2mad_H 349 GAGDQDQS 356 (373)
T ss_pred CCCCEEee
Confidence 98887655
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.3e-07 Score=99.16 Aligned_cols=215 Identities=9% Similarity=-0.012 Sum_probs=114.8
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCcee-c-ccccccccccccCccceeeeeeccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVE-A-DALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLY 207 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 207 (789)
+...+..+++||||++|+.+.. ..+|++||+.+++.. . ..+... . +
T Consensus 54 h~~~v~~~~~s~~~~~l~s~s~-----d~~v~vwd~~~~~~~~~~~~~~~~------~-~-------------------- 101 (377)
T 3dwl_C 54 HDKIVTCVDWAPKSNRIVTCSQ-----DRNAYVYEKRPDGTWKQTLVLLRL------N-R-------------------- 101 (377)
T ss_dssp CSSCEEEEEECTTTCCEEEEET-----TSSEEEC------CCCCEEECCCC------S-S--------------------
T ss_pred CCceEEEEEEeCCCCEEEEEeC-----CCeEEEEEcCCCCceeeeeEeccc------C-C--------------------
Confidence 3445788999999999985442 336999999998611 1 011111 0 0
Q ss_pred cccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC
Q 003878 208 LRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS 287 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~ 287 (789)
....++|+||++.|+....+ ..|++|++.+...
T Consensus 102 ----------------------------~v~~~~~~~~~~~l~~~~~d-------------------~~i~iwd~~~~~~ 134 (377)
T 3dwl_C 102 ----------------------------AATFVRWSPNEDKFAVGSGA-------------------RVISVCYFEQEND 134 (377)
T ss_dssp ----------------------------CEEEEECCTTSSCCEEEESS-------------------SCEEECCC-----
T ss_pred ----------------------------ceEEEEECCCCCEEEEEecC-------------------CeEEEEEECCccc
Confidence 24789999999998876543 2477777766532
Q ss_pred C-cEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcc-cccccCCCCccEeee---ccccce
Q 003878 288 E-DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLE-GFKKRDGLLPFVKLI---DGFDAQ 362 (789)
Q Consensus 288 ~-~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~~~~~~l~---~~~~~~ 362 (789)
. ....+..+ +...+..+.|+|||++|+....+ ..|.++|+........ ...+-....+..... ......
T Consensus 135 ~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 208 (377)
T 3dwl_C 135 WWVSKHLKRP-LRSTILSLDWHPNNVLLAAGCAD-----RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWV 208 (377)
T ss_dssp CCCCEEECSS-CCSCEEEEEECTTSSEEEEEESS-----SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSE
T ss_pred ceeeeEeecc-cCCCeEEEEEcCCCCEEEEEeCC-----CEEEEEEEEecccCCCccccccccccchhhhhhcccCCceE
Confidence 1 11222321 34456789999999999876643 3377778753210000 000000000111111 111111
Q ss_pred -eEEEecCCCEEEEEECCCCCCceEEEEECCCCCC----eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEEC
Q 003878 363 -YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND----WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 363 -~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~----~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl 437 (789)
...|+|+|+.|+..+. ++.|..+|+.+++. ...+..+. ..+..+.+++++.++++...++ +.+|+.
T Consensus 209 ~~~~~sp~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~---~~~~~~ 279 (377)
T 3dwl_C 209 HAVGFSPSGNALAYAGH----DSSVTIAYPSAPEQPPRALITVKLSQ--LPLRSLLWANESAIVAAGYNYS---PILLQG 279 (377)
T ss_dssp EEEEECTTSSCEEEEET----TTEEC-CEECSTTSCEEECCCEECSS--SCEEEEEEEETTEEEEEESSSS---EEEECC
T ss_pred EEEEECCCCCEEEEEeC----CCcEEEEECCCCCCcceeeEeecCCC--CceEEEEEcCCCCEEEEEcCCc---EEEEEe
Confidence 2348999997776543 35788888887763 22333332 4578899998778887776554 445665
Q ss_pred C
Q 003878 438 K 438 (789)
Q Consensus 438 ~ 438 (789)
.
T Consensus 280 ~ 280 (377)
T 3dwl_C 280 N 280 (377)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.7e-05 Score=87.47 Aligned_cols=72 Identities=4% Similarity=0.105 Sum_probs=50.8
Q ss_pred EEEecC-CEEEEEEEeC-------CeEEEEEEECCCCceeeecccCCeeEEEeecccCCc-EEEEEEcCCCCCcEEEEEE
Q 003878 412 ATAVNL-NQMIVSYLSD-------VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDS-VVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 412 v~~~~~-~~lv~~~~~~-------g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~-~l~~~~ss~~~P~~ly~~d 482 (789)
+.++++ +++|+..... +...|.++|+++++.+..|..+.. ..++.+++|++ .++.+. . .-..+..+|
T Consensus 324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~-P~gia~spDg~~~lyv~n-~--~s~~VsVID 399 (426)
T 3c75_H 324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHE-IDSINVSQDAEPLLYALS-A--GTQTLHIYD 399 (426)
T ss_dssp EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE-ECEEEECCSSSCEEEEEE-T--TTTEEEEEE
T ss_pred eEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCC-cCeEEEccCCCEEEEEEc-C--CCCeEEEEE
Confidence 566664 6777765431 246899999999988788865532 44678899998 555433 2 257999999
Q ss_pred CCCCC
Q 003878 483 LKTET 487 (789)
Q Consensus 483 l~tg~ 487 (789)
+.+++
T Consensus 400 ~~t~k 404 (426)
T 3c75_H 400 AATGE 404 (426)
T ss_dssp TTTCC
T ss_pred CCCCC
Confidence 99986
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-06 Score=95.66 Aligned_cols=199 Identities=9% Similarity=-0.056 Sum_probs=101.9
Q ss_pred cceEEEEe--------CCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEe
Q 003878 237 FSSIAWTH--------DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVT 308 (789)
Q Consensus 237 ~~~~~wsp--------Dg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~S 308 (789)
+.+++|+| ||+.|+-... ...|++|++.+... ...++.. ...+.+++|+
T Consensus 139 v~~v~~~p~~~~~~~~d~~~las~s~-------------------D~tv~~Wd~~~~~~-~~~~~~~---~~~v~~v~~~ 195 (393)
T 4gq1_A 139 VNDIDIADVYSADNRLAEQVIASVGD-------------------DCTLIIWRLTDEGP-ILAGYPL---SSPGISVQFR 195 (393)
T ss_dssp EEEEEEEEEECTTCSEEEEEEEEEET-------------------TSEEEEEEEETTEE-EEEEEEC---SSCEEEEEEE
T ss_pred eEEEEEccccccccCCCCCEEEEEEC-------------------CCeEEEEECCCCce-eeeecCC---CCCcEEEEEC
Confidence 57899998 8877775433 34688999865432 2223332 2235689999
Q ss_pred cCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCC--CccE-------e---eeccccc--eeEEEecCCCEEE
Q 003878 309 EDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGL--LPFV-------K---LIDGFDA--QYEVIANDDTVFT 374 (789)
Q Consensus 309 pDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~--~~~~-------~---l~~~~~~--~~~~~s~dG~~l~ 374 (789)
|++..+++.... ...|.++|+.++............. .... . ....... ....+.+||+.|+
T Consensus 196 p~~~~~l~~~~~----d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~ 271 (393)
T 4gq1_A 196 PSNPNQLIVGER----NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGIL 271 (393)
T ss_dssp TTEEEEEEEEET----TSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEE
T ss_pred CCCCceEEecCC----CCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEE
Confidence 999866655543 3558889988753110000000000 0000 0 0000010 1122347888776
Q ss_pred EEECCCCCCceEEEEECCCCCCeEEeccCCC----------------CceeeeEEEec--CCEEEEEEEeCCeEEEEEEE
Q 003878 375 FLTNKDAPKYKIIRVDLKEPNDWFEVIPEAE----------------RDVLESATAVN--LNQMIVSYLSDVKYVLQIRD 436 (789)
Q Consensus 375 ~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~----------------~~~i~~v~~~~--~~~lv~~~~~~g~~~L~~~d 436 (789)
-.+. +..+..+|+..+.....+..+.. ........+.+ ++.+++....++ .|++||
T Consensus 272 s~s~----d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg--~V~lwd 345 (393)
T 4gq1_A 272 AMCK----SGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHG--LIQLIN 345 (393)
T ss_dssp EECT----TSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTT--EEEEEE
T ss_pred EEeC----CCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCC--EEEEEE
Confidence 4332 35677788765431111111100 00011122222 345666666676 799999
Q ss_pred CCCCceeeecccCCeeEEEeecccCCcEEEEE
Q 003878 437 LKNGSLLHQLPIEIGSVNAISARREDSVVFIS 468 (789)
Q Consensus 437 l~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~ 468 (789)
..+|+....+......|..++++||++.|+..
T Consensus 346 ~~~~~~~~~~~~~~~~V~svafspdG~~LA~a 377 (393)
T 4gq1_A 346 TYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIA 377 (393)
T ss_dssp TTCTTCCEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence 98887644444345678889999999988764
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.53 E-value=4e-06 Score=90.02 Aligned_cols=209 Identities=9% Similarity=-0.034 Sum_probs=124.2
Q ss_pred cEEEEeEEeCCC--CcEEEEEEecCCceEEEEEEEEcCCCceecc-cccccccccccCccceeeeeeccccccccccccc
Q 003878 131 TAALIKVSVSED--AKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLY 207 (789)
Q Consensus 131 ~~~~~~~~~SpD--g~~la~~~~~~g~~~~~i~v~dl~tg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 207 (789)
...+..+.|||+ |++|+.+.. ..+|++||+.+++.... .+... .+
T Consensus 55 ~~~v~~~~~~~~~~~~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~-------~~-------------------- 102 (379)
T 3jrp_A 55 EGPVWRVDWAHPKFGTILASCSY-----DGKVLIWKEENGRWSQIAVHAVH-------SA-------------------- 102 (379)
T ss_dssp SSCEEEEEECCGGGCSEEEEEET-----TSCEEEEEEETTEEEEEEEECCC-------SS--------------------
T ss_pred CCcEEEEEeCCCCCCCEEEEecc-----CCEEEEEEcCCCceeEeeeecCC-------Cc--------------------
Confidence 345788899988 888875432 23799999999852211 11111 00
Q ss_pred cccceeeEEEeeeccccceeeeeeecccccceEEEEeC--CcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCC
Q 003878 208 LRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHD--SKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTK 285 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspD--g~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~ 285 (789)
....++|+|+ ++.|+....+ ..|.++++.+.
T Consensus 103 ----------------------------~v~~~~~~~~~~~~~l~~~~~d-------------------~~i~v~d~~~~ 135 (379)
T 3jrp_A 103 ----------------------------SVNSVQWAPHEYGPLLLVASSD-------------------GKVSVVEFKEN 135 (379)
T ss_dssp ----------------------------CEEEEEECCGGGCSEEEEEETT-------------------SEEEEEECCTT
T ss_pred ----------------------------ceEEEEeCCCCCCCEEEEecCC-------------------CcEEEEecCCC
Confidence 2578999999 8888876433 35888898776
Q ss_pred CCCcEEEEecCCCCeeEEEEEEec-------------CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCcc
Q 003878 286 QSEDILCWKDPEHPKYIFSGHVTE-------------DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPF 352 (789)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~Sp-------------DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 352 (789)
.......+... ...+..+.|+| |+++++....+ ..|+++|+.++... ....
T Consensus 136 ~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~---------~~~~ 199 (379)
T 3jrp_A 136 GTTSPIIIDAH--AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD-----NLVKIWKYNSDAQT---------YVLE 199 (379)
T ss_dssp SCCCEEEEECC--TTCEEEEEECCCC----------CTTCEEEEEETT-----SCEEEEEEETTTTE---------EEEE
T ss_pred CceeeEEecCC--CCceEEEEEcCccccccccccCCCCCCEEEEEeCC-----CeEEEEEecCCCcc---------eeeE
Confidence 44444444332 33466889999 68888876543 34788887653210 0001
Q ss_pred Eeeeccccce-eEEEecC---CCEEEEEECCCCCCceEEEEECCCCC-C-eEEecc-CCCCceeeeEEEecCCEEEEEEE
Q 003878 353 VKLIDGFDAQ-YEVIAND---DTVFTFLTNKDAPKYKIIRVDLKEPN-D-WFEVIP-EAERDVLESATAVNLNQMIVSYL 425 (789)
Q Consensus 353 ~~l~~~~~~~-~~~~s~d---G~~l~~~tn~~~~~~~L~~~dl~~~~-~-~~~l~~-~~~~~~i~~v~~~~~~~lv~~~~ 425 (789)
..+....... -..|+|+ ++.|+..+. ++.|..+|+.++. . ...+.. ......+..+.+++++.++++..
T Consensus 200 ~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 275 (379)
T 3jrp_A 200 STLEGHSDWVRDVAWSPTVLLRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG 275 (379)
T ss_dssp EEECCCSSCEEEEEECCCCSSSEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred EEEecccCcEeEEEECCCCCCCCeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEec
Confidence 1111111111 2348998 665554432 3467888877653 1 122322 22235678899998777777777
Q ss_pred eCCeEEEEEEECCCC
Q 003878 426 SDVKYVLQIRDLKNG 440 (789)
Q Consensus 426 ~~g~~~L~~~dl~tG 440 (789)
.++ .|++|++..+
T Consensus 276 ~dg--~i~iw~~~~~ 288 (379)
T 3jrp_A 276 GDN--KVTLWKENLE 288 (379)
T ss_dssp SSS--SEEEEEEEET
T ss_pred CCC--cEEEEeCCCC
Confidence 777 4666666533
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-05 Score=84.42 Aligned_cols=153 Identities=12% Similarity=0.091 Sum_probs=89.6
Q ss_pred EEEEecCCcEEEEEEEc-CC------------CCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-eeEEEecC
Q 003878 304 SGHVTEDGQYLVMCIEE-NC------------DPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIAND 369 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~~-~~------------~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~d 369 (789)
.+.++|||+.. ++... +. .....||.++.+++. +..+. +... .-..|+||
T Consensus 135 ~i~~d~dG~l~-~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~--------------~~~~~-~~~~p~gl~~spd 198 (305)
T 3dr2_A 135 DLIVARDGAIW-FTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP--------------LQRMA-DLDHPNGLAFSPD 198 (305)
T ss_dssp CEEECTTSCEE-EECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC--------------CEEEE-EESSEEEEEECTT
T ss_pred CEEECCCCCEE-EeCcCCCccccccccccccccCCCeEEEEcCCCCc--------------EEEEe-cCCCCcceEEcCC
Confidence 47889999844 42100 00 113679999986642 12222 2211 22358999
Q ss_pred CCEEEEEECCC--CCCceEEEEECCCCC-CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec
Q 003878 370 DTVFTFLTNKD--APKYKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL 446 (789)
Q Consensus 370 G~~l~~~tn~~--~~~~~L~~~dl~~~~-~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l 446 (789)
|+.||+..... ..+.+|+++++++.. .-..++.........++.+.+++.+++.. .+ .|++++.+ |+....+
T Consensus 199 g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~---gv~~~~~~-g~~~~~~ 273 (305)
T 3dr2_A 199 EQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT---GVCVFDSD-GQLLGHI 273 (305)
T ss_dssp SSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SS---EEEEECTT-SCEEEEE
T ss_pred CCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CC---cEEEECCC-CCEEEEE
Confidence 99998875431 113679998876542 00122211112334567787766776654 33 49999996 7766677
Q ss_pred ccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEEC
Q 003878 447 PIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 447 ~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl 483 (789)
..+.. +..+.++++++.|+++.+. .+|++++
T Consensus 274 ~~~~~-~~~~~f~~d~~~L~it~~~-----~l~~~~~ 304 (305)
T 3dr2_A 274 PTPGT-ASNCTFDQAQQRLFITGGP-----CLWMLPL 304 (305)
T ss_dssp ECSSC-CCEEEECTTSCEEEEEETT-----EEEEEEC
T ss_pred ECCCc-eeEEEEeCCCCEEEEEcCC-----eEEEEEC
Confidence 66643 4456677888888886543 7787764
|
| >1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.1e-07 Score=103.86 Aligned_cols=114 Identities=9% Similarity=-0.025 Sum_probs=80.8
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHH-HHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcC
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSR-TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG 613 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~-~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~ 613 (789)
+...|+||++||..+.. ...|.... ..+++..||.|+++|+||.|..... .. ...-....+|+.+.+++|.++.
T Consensus 67 ~~~~p~vvliHG~~~~~-~~~w~~~l~~~l~~~~~~~Vi~~D~~G~G~S~~~--~~--~~~~~~~~~dl~~li~~L~~~~ 141 (452)
T 1bu8_A 67 QLDRKTRFIVHGFIDKG-EDGWLLDMCKKMFQVEKVNCICVDWRRGSRTEYT--QA--SYNTRVVGAEIAFLVQVLSTEM 141 (452)
T ss_dssp CTTSEEEEEECCSCCTT-CTTHHHHHHHHHHTTCCEEEEEEECHHHHSSCHH--HH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCC-CchHHHHHHHHHHhhCCCEEEEEechhcccCchh--Hh--HhhHHHHHHHHHHHHHHHHHhc
Confidence 34578999999987654 23444423 4455434999999999997754311 11 0111123467778888887553
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 614 YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 614 ~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
.++.+++.++|||+||.+++.++.++|++++++|...|..
T Consensus 142 g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1bu8_A 142 GYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (452)
T ss_dssp CCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCCccceEEEEEChhHHHHHHHHHhcccccceEEEecCCc
Confidence 3567899999999999999999999999999999877643
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.3e-05 Score=83.59 Aligned_cols=201 Identities=10% Similarity=0.052 Sum_probs=114.0
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCC------CCeeEEEEEEecC
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE------HPKYIFSGHVTED 310 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~------~~~~~~~~~~SpD 310 (789)
...++++||| .+|++.. ....|+++++.+..... ...... .+. .+.+ +
T Consensus 86 p~~i~~~~~g-~lyv~~~------------------~~~~v~~iD~~t~~~~~--~i~~g~~~~~~~~p~---~i~~--~ 139 (328)
T 3dsm_A 86 PRYIHFLSDE-KAYVTQI------------------WDYRIFIINPKTYEITG--YIECPDMDMESGSTE---QMVQ--Y 139 (328)
T ss_dssp EEEEEEEETT-EEEEEEB------------------SCSEEEEEETTTTEEEE--EEECTTCCTTTCBCC---CEEE--E
T ss_pred CcEEEEeCCC-eEEEEEC------------------CCCeEEEEECCCCeEEE--EEEcCCccccCCCcc---eEEE--E
Confidence 3678899998 6766531 23458888876643221 122222 222 3444 5
Q ss_pred CcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCC-------C
Q 003878 311 GQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAP-------K 383 (789)
Q Consensus 311 G~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~-------~ 383 (789)
+++|++.... ....|+++|++++. ....+..+.......++++|+ +|+.++.+.. .
T Consensus 140 ~~~lyv~~~~---~~~~v~viD~~t~~-------------~~~~i~~g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~ 202 (328)
T 3dsm_A 140 GKYVYVNCWS---YQNRILKIDTETDK-------------VVDELTIGIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEA 202 (328)
T ss_dssp TTEEEEEECT---TCCEEEEEETTTTE-------------EEEEEECSSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCC
T ss_pred CCEEEEEcCC---CCCEEEEEECCCCe-------------EEEEEEcCCCccceEEcCCCC-EEEEECCCccCCccccCC
Confidence 7777665421 13579999998742 111121122222234678876 6666553211 2
Q ss_pred ceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeee--cccCCeeEEEeeccc
Q 003878 384 YKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQ--LPIEIGSVNAISARR 460 (789)
Q Consensus 384 ~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~--l~~~~~~v~~~s~s~ 460 (789)
..|+++|.++++ ....+.-.......+++++++ +.+|+.. . .|+++|+++++.... ++.......++.++|
T Consensus 203 ~~v~~id~~t~~-v~~~~~~~~g~~p~~la~~~d~~~lyv~~---~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp 276 (328)
T 3dsm_A 203 PSLYRIDAETFT-VEKQFKFKLGDWPSEVQLNGTRDTLYWIN---N--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNP 276 (328)
T ss_dssp CEEEEEETTTTE-EEEEEECCTTCCCEEEEECTTSCEEEEES---S--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECT
T ss_pred ceEEEEECCCCe-EEEEEecCCCCCceeEEEecCCCEEEEEc---c--EEEEEECCCCceeeeeeecCCCCceEEEEEcC
Confidence 689999998775 332222111123567888874 4555532 2 689999987765221 221123455778888
Q ss_pred CCcEEEEEE-cCCCCCcEEEEEECCCCC
Q 003878 461 EDSVVFISF-TSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 461 d~~~l~~~~-ss~~~P~~ly~~dl~tg~ 487 (789)
++..++++- .++.....+++||.+ ++
T Consensus 277 ~~g~lyva~~~~y~~~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 277 NNGEVYVADAIDYQQQGIVYRYSPQ-GK 303 (328)
T ss_dssp TTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred CCCeEEEEcccccccCCEEEEECCC-CC
Confidence 777788763 344567899999987 64
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.8e-06 Score=101.48 Aligned_cols=159 Identities=8% Similarity=0.017 Sum_probs=85.2
Q ss_pred CCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccE--ee---e-cccccee-EEEe---
Q 003878 298 HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV--KL---I-DGFDAQY-EVIA--- 367 (789)
Q Consensus 298 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~--~l---~-~~~~~~~-~~~s--- 367 (789)
+...+.++++|||| +|+.... ...|.++|++++. .+. .+ . ....... ..|+
T Consensus 574 h~~~V~svafSpdG-~lAsgs~-----D~tv~lwd~~~~~-------------~~~~~~~~~~~~gh~~~V~sv~Fs~~~ 634 (902)
T 2oaj_A 574 NKGKTSAINNSNIG-FVGIAYA-----AGSLMLIDRRGPA-------------IIYMENIREISGAQSACVTCIEFVIME 634 (902)
T ss_dssp CSCSEEEEEECBTS-EEEEEET-----TSEEEEEETTTTE-------------EEEEEEGGGTCSSCCCCEEEEEEEEEE
T ss_pred CCCcEEEEEecCCc-EEEEEeC-----CCcEEEEECCCCe-------------EEEEeehhHhccccccceEEEEEEEEe
Confidence 34456789999999 8876653 3458889987631 010 11 0 1111112 3488
Q ss_pred --cCC---CEEEEEECCCCCCceEEEEEC---CCCCCeEEeccCC---CCceeeeEE-Ee--------------------
Q 003878 368 --NDD---TVFTFLTNKDAPKYKIIRVDL---KEPNDWFEVIPEA---ERDVLESAT-AV-------------------- 415 (789)
Q Consensus 368 --~dG---~~l~~~tn~~~~~~~L~~~dl---~~~~~~~~l~~~~---~~~~i~~v~-~~-------------------- 415 (789)
||| +.|+..++. ..|.++++ .+++....+..+. ....+..+. +.
T Consensus 635 ~~~Dg~~~~~l~sgs~D----~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~ 710 (902)
T 2oaj_A 635 YGDDGYSSILMVCGTDM----GEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKG 710 (902)
T ss_dssp CTTSSSEEEEEEEEETT----SEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGT
T ss_pred cCCCCCcceEEEEEecC----CcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCC
Confidence 886 556554443 56777776 4544112222221 012223333 22
Q ss_pred --cCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEe---e------cccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 416 --NLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAI---S------ARREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 416 --~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~---s------~s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
. +..++...+. .+++|++.+++..+.+-.....+..+ . +++++..|+. ...-+++..|++.
T Consensus 711 ~~~-~~~~l~~~~~---~ir~~~~~~~k~~~k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~----~~~~g~i~~~s~p 782 (902)
T 2oaj_A 711 LCI-PGIVLITGFD---DIRLITLGKSKSTHKGFKYPLAATGLSYISTVEKNNDRKNLTVIIT----LEINGHLRVFTIP 782 (902)
T ss_dssp CCC-CEEEEEECSS---EEEEECTTCCCEEEEECSSCEEEEEEEEEEEECSSSCEEEEEEEEE----EETTSEEEEEETT
T ss_pred CCC-CeEEEEEecc---ceEEEeCccccceeeEcccceeeeEEEEEEeccccccccCceEEEE----EeCCCcEEEEECc
Confidence 2 3444444433 69999998887654442223444343 3 4455554443 2356799999999
Q ss_pred CCC
Q 003878 485 TET 487 (789)
Q Consensus 485 tg~ 487 (789)
+.+
T Consensus 783 ~l~ 785 (902)
T 2oaj_A 783 DFK 785 (902)
T ss_dssp TCC
T ss_pred chH
Confidence 886
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00031 Score=75.74 Aligned_cols=211 Identities=10% Similarity=0.052 Sum_probs=111.0
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECC-CCCCCcEEEEecC--CCCeeEEEEEEecCCcE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLG-TKQSEDILCWKDP--EHPKYIFSGHVTEDGQY 313 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg-~~~~~~~~~~~~~--~~~~~~~~~~~SpDG~~ 313 (789)
...++|+|||+.||.... . .+.++++. ++. ...+...+ ..+ ..+.+||||++
T Consensus 42 ~~~~a~spdg~~l~~~~~------------------~--~v~~~~~~~~g~--~~~~~~~~~~g~~---~~~~~spdg~~ 96 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAM------------------K--KWSSFAVKSPTE--IVHEASHPIGGHP---RANDADTNTRA 96 (365)
T ss_dssp CSEEEECTTSSEEEEEEB------------------T--EEEEEEEEETTE--EEEEEEEECCSSG---GGGCTTSCCEE
T ss_pred CcEEEECCCCCEEEEEcc------------------c--eEEEEEECCCCC--EEEeeEeecCCCC---ccEEECCCCCE
Confidence 367999999998876532 1 57777765 321 11122211 111 23678999997
Q ss_pred EEEEEEc-------CC---CCceEEEEEECCC-CCCCcccccccCCCCccEeee---ccccceeEEEecCCCEEEEEECC
Q 003878 314 LVMCIEE-------NC---DPVNKVYYCDLSA-LPEGLEGFKKRDGLLPFVKLI---DGFDAQYEVIANDDTVFTFLTNK 379 (789)
Q Consensus 314 l~~~~~~-------~~---~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~s~dG~~l~~~tn~ 379 (789)
|++.+.+ .. .....+.+++++. +. ........ .........|+|||+.+|+. +.
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~-~~ 164 (365)
T 1jof_A 97 IFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGK-----------LEKNVQNYEYQENTGIHGMVFDPTETYLYSA-DL 164 (365)
T ss_dssp EEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCC-----------EEEEEEEEECCTTCCEEEEEECTTSSEEEEE-ET
T ss_pred EEEEEecCCcceeccceeecCCceEEEEccCCCCc-----------CcceEeeEEeCCCCcceEEEECCCCCEEEEE-cC
Confidence 5433221 00 0123466666653 21 00011111 11112234589999988754 43
Q ss_pred CCCCceEEEEECC-CCCCeEEe--cc-CCCCceeeeEEEecCCEEEEEEEe-CCeEEEEEEECCCCcee---eecc-cCC
Q 003878 380 DAPKYKIIRVDLK-EPNDWFEV--IP-EAERDVLESATAVNLNQMIVSYLS-DVKYVLQIRDLKNGSLL---HQLP-IEI 450 (789)
Q Consensus 380 ~~~~~~L~~~dl~-~~~~~~~l--~~-~~~~~~i~~v~~~~~~~lv~~~~~-~g~~~L~~~dl~tG~~~---~~l~-~~~ 450 (789)
+ ..+|++++++ +++ ...+ +. .........+.++++++.++.... ++.-.++.++.++|+.. ..+. ++.
T Consensus 165 ~--~~~v~~~~~~~~g~-~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 165 T--ANKLWTHRKLASGE-VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp T--TTEEEEEEECTTSC-EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred C--CCEEEEEEECCCCC-EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence 2 3578888887 554 3222 11 111234677889986544444443 44334444455566531 1221 221
Q ss_pred ---e---------eEEEee-cccCCcEEEEEEcCC--CCCcEEEEEECC-CCC
Q 003878 451 ---G---------SVNAIS-ARREDSVVFISFTSF--LIPGIVYQCNLK-TET 487 (789)
Q Consensus 451 ---~---------~v~~~s-~s~d~~~l~~~~ss~--~~P~~ly~~dl~-tg~ 487 (789)
+ .+..+. ++||++.++++-.+. ..|.++..|+++ +++
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~ 294 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS 294 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC
Confidence 1 466788 999999887654322 235688888885 564
|
| >1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.4e-07 Score=102.08 Aligned_cols=114 Identities=10% Similarity=-0.036 Sum_probs=79.7
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHH-HHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcC
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSR-TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG 613 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~-~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~ 613 (789)
+...|++|++||..+.. ...|.... ..+++..||.|+++|+||.|..... ... ..-....+|+.+.+++|.++.
T Consensus 67 ~~~~p~vvliHG~~~~~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~G~S~~~--~~~--~~~~~~~~dl~~~i~~L~~~~ 141 (452)
T 1w52_X 67 QSSRKTHFVIHGFRDRG-EDSWPSDMCKKILQVETTNCISVDWSSGAKAEYT--QAV--QNIRIVGAETAYLIQQLLTEL 141 (452)
T ss_dssp CTTSCEEEEECCTTCCS-SSSHHHHHHHHHHTTSCCEEEEEECHHHHTSCHH--HHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCC-CchHHHHHHHHHHhhCCCEEEEEecccccccccH--HHH--HhHHHHHHHHHHHHHHHHHhc
Confidence 34568999999976543 23444423 3444434999999999997764321 110 011122467777888887542
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 614 YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 614 ~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
..+.+++.++|||+||.+++.++.++|++++++|...|..
T Consensus 142 g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1w52_X 142 SYNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDPAE 181 (452)
T ss_dssp CCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCCcccEEEEEeCHHHHHHHHHHHhcccceeeEEeccccc
Confidence 3457899999999999999999999999999999877643
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.9e-06 Score=91.96 Aligned_cols=117 Identities=15% Similarity=0.077 Sum_probs=71.3
Q ss_pred cceEEEEeCC-cEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC--cEEEEecCCCC----------eeEE
Q 003878 237 FSSIAWTHDS-KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE--DILCWKDPEHP----------KYIF 303 (789)
Q Consensus 237 ~~~~~wspDg-~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~--~~~~~~~~~~~----------~~~~ 303 (789)
...++|+||| +.|+....+ ..|++|++.+.... ....+.....+ ..+.
T Consensus 229 v~~~~~~p~~~~~l~s~~~d-------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 289 (447)
T 3dw8_B 229 ITAAEFHPNSCNTFVYSSSK-------------------GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSIS 289 (447)
T ss_dssp EEEEEECSSCTTEEEEEETT-------------------SCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEE
T ss_pred eEEEEECCCCCcEEEEEeCC-------------------CeEEEEECcCCccccceeeEeccCCCccccccccccCceEE
Confidence 5789999999 777765432 24888898765421 12344443210 1467
Q ss_pred EEEEecCCcEEEEEEEcCCCCceEEEEEECCC-CCCCcccccccCCCCccEeeecccc----------------ceeEEE
Q 003878 304 SGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA-LPEGLEGFKKRDGLLPFVKLIDGFD----------------AQYEVI 366 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~~l~~~~~----------------~~~~~~ 366 (789)
.+.|+|||++|+.... ..|.++|+.+ +. +...+..... ..-..|
T Consensus 290 ~~~~s~~g~~l~~~~~------~~v~iwd~~~~~~-------------~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~ 350 (447)
T 3dw8_B 290 DVKFSHSGRYMMTRDY------LSVKVWDLNMENR-------------PVETYQVHEYLRSKLCSLYENDCIFDKFECCW 350 (447)
T ss_dssp EEEECTTSSEEEEEES------SEEEEEETTCCSS-------------CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEE
T ss_pred EEEECCCCCEEEEeeC------CeEEEEeCCCCcc-------------ccceeeccccccccccccccccccccceEEEE
Confidence 8999999999986542 4588899875 21 1111111100 001458
Q ss_pred ecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 367 ANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 367 s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
+|+|+.|+..+ .++.|..+|+.+++
T Consensus 351 s~~~~~l~s~s----~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 351 NGSDSVVMTGS----YNNFFRMFDRNTKR 375 (447)
T ss_dssp CTTSSEEEEEC----STTEEEEEETTTCC
T ss_pred CCCCCEEEEec----cCCEEEEEEcCCCc
Confidence 99999885322 34689999998775
|
| >1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-06 Score=89.83 Aligned_cols=104 Identities=14% Similarity=0.066 Sum_probs=63.8
Q ss_pred EEEEEcCCCCccCC-CCCCHHHHHHHHcC--CeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 540 CLLYGYGGFNISVT-PSFSVSRTILMRHL--GAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 540 ~ll~~hGg~~~~~~-~~~~~~~~~~l~~~--G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
.||++||..+.... ..|.. ....|++. |+.|+.+|+ |.|....... +.. ...-+++.+.++.+......
T Consensus 7 pvVllHG~~~~~~~~~~~~~-~~~~L~~~~~g~~v~~~d~-G~g~s~~~~~--~~~---~~~~~~~~~~~~~l~~~~~l- 78 (279)
T 1ei9_A 7 PLVIWHGMGDSCCNPLSMGA-IKKMVEKKIPGIHVLSLEI-GKTLREDVEN--SFF---LNVNSQVTTVCQILAKDPKL- 78 (279)
T ss_dssp CEEEECCTTCCSCCTTTTHH-HHHHHHHHSTTCCEEECCC-SSSHHHHHHH--HHH---SCHHHHHHHHHHHHHSCGGG-
T ss_pred cEEEECCCCCCCCCcccHHH-HHHHHHHHCCCcEEEEEEe-CCCCcccccc--ccc---cCHHHHHHHHHHHHHhhhhc-
Confidence 38899997765533 24554 34555533 889999997 7653211100 000 11223333344444332111
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCc-eeEEEecCC
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPDL-FGCALAHVG 651 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd~-f~a~v~~~p 651 (789)
.+++.++|||+||.++..++.++|+. ++.+|+..+
T Consensus 79 ~~~~~lvGhSmGG~ia~~~a~~~~~~~v~~lv~~~~ 114 (279)
T 1ei9_A 79 QQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGG 114 (279)
T ss_dssp TTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESC
T ss_pred cCCEEEEEECHHHHHHHHHHHHcCCcccceEEEecC
Confidence 26899999999999999999999984 888886553
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.40 E-value=6.9e-06 Score=91.05 Aligned_cols=161 Identities=11% Similarity=0.063 Sum_probs=96.3
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC-CcEEEEecCCCCeeEEEEEEecCCcEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS-EDILCWKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~-~~~~~~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
...++|+|++..++++.. ....|++|++.+... .....+.. +...+..+.|+|+|++++
T Consensus 234 v~~v~~~p~~~~~l~s~~------------------~dg~i~i~d~~~~~~~~~~~~~~~--~~~~v~~i~~~p~~~~~l 293 (430)
T 2xyi_A 234 VEDVAWHLLHESLFGSVA------------------DDQKLMIWDTRNNNTSKPSHTVDA--HTAEVNCLSFNPYSEFIL 293 (430)
T ss_dssp EEEEEECSSCTTEEEEEE------------------TTSEEEEEETTCSCSSSCSEEEEC--CSSCEEEEEECSSCTTEE
T ss_pred EeeeEEeCCCCCEEEEEe------------------CCCeEEEEECCCCCCCcceeEeec--CCCCeEEEEeCCCCCCEE
Confidence 478999996555555532 234689999986531 22223332 233466899999999766
Q ss_pred EEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCCEEEEEECCCCCCceEEEEECCCC
Q 003878 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 394 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~ 394 (789)
++... ...|.++|+.+.. .+...+........ ..|+|+|+.+++.... +..|..+|+...
T Consensus 294 ~tg~~----dg~v~vwd~~~~~------------~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~---d~~i~iwd~~~~ 354 (430)
T 2xyi_A 294 ATGSA----DKTVALWDLRNLK------------LKLHSFESHKDEIFQVQWSPHNETILASSGT---DRRLHVWDLSKI 354 (430)
T ss_dssp EEEET----TSEEEEEETTCTT------------SCSEEEECCSSCEEEEEECSSCTTEEEEEET---TSCCEEEEGGGT
T ss_pred EEEeC----CCeEEEEeCCCCC------------CCeEEeecCCCCEEEEEECCCCCCEEEEEeC---CCcEEEEeCCCC
Confidence 65543 3558999998631 12222322222222 3489999776655543 356888887652
Q ss_pred CC-----------eEEeccC-CCCceeeeEEEecCCE-EEEEEEeCCeEEEEEEECC
Q 003878 395 ND-----------WFEVIPE-AERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 395 ~~-----------~~~l~~~-~~~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl~ 438 (789)
.. ...+... .....+..+.|++++. ++++...++ .|.+|++.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg--~i~iw~~~ 409 (430)
T 2xyi_A 355 GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN--IMQVWQMA 409 (430)
T ss_dssp TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTS--EEEEEEEC
T ss_pred ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCC--CEEEeEcc
Confidence 10 0122211 2234688999998655 888888887 67788876
|
| >1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E | Back alignment and structure |
|---|
Probab=98.38 E-value=8.3e-07 Score=94.44 Aligned_cols=104 Identities=16% Similarity=0.127 Sum_probs=76.5
Q ss_pred CCccEEEEEcCCCCccCC----CCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHH
Q 003878 536 GSHPCLLYGYGGFNISVT----PSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLIS 611 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~----~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~ 611 (789)
++.|.||++||..+.... ..|.. ....|.++||.|+.+|+||.|.... .....+++.+.++.+++
T Consensus 6 ~~~~~vVlvHG~~~~~~~~~~~~~w~~-l~~~L~~~G~~V~~~d~~g~g~s~~----------~~~~~~~l~~~i~~~l~ 74 (320)
T 1ys1_X 6 ATRYPIILVHGLTGTDKYAGVLEYWYG-IQEDLQQRGATVYVANLSGFQSDDG----------PNGRGEQLLAYVKTVLA 74 (320)
T ss_dssp CCSSCEEEECCTTCCSEETTTEESSTT-HHHHHHHTTCCEEECCCCSSCCSSS----------TTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCccccchHHHHHH-HHHHHHhCCCEEEEEcCCCCCCCCC----------CCCCHHHHHHHHHHHHH
Confidence 456789999998765421 34444 3455555999999999998765321 12345666666666655
Q ss_pred cCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 612 AGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 612 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
. .+.+++.++|||+||+++..++.++|++++++|...+.
T Consensus 75 ~--~~~~~v~lvGHS~GG~va~~~a~~~p~~V~~lV~i~~p 113 (320)
T 1ys1_X 75 A--TGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTP 113 (320)
T ss_dssp H--HCCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred H--hCCCCEEEEEECHhHHHHHHHHHhChhhceEEEEECCC
Confidence 4 23468999999999999999999999999999988774
|
| >1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18 | Back alignment and structure |
|---|
Probab=98.38 E-value=5.5e-07 Score=94.33 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=74.2
Q ss_pred CCccEEEEEcCCCCccC---CCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHc
Q 003878 536 GSHPCLLYGYGGFNISV---TPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA 612 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~---~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~ 612 (789)
++.|.||++||..+... ...|.. ....|.++||.|+.+|+||.|... ...+++.+.++.+++.
T Consensus 5 ~~~~~vvlvHG~~~~~~~~~~~~~~~-~~~~L~~~G~~v~~~d~~g~g~s~-------------~~~~~~~~~i~~~~~~ 70 (285)
T 1ex9_A 5 QTKYPIVLAHGMLGFDNILGVDYWFG-IPSALRRDGAQVYVTEVSQLDTSE-------------VRGEQLLQQVEEIVAL 70 (285)
T ss_dssp CCSSCEEEECCTTCCSEETTEESSTT-HHHHHHHTTCCEEEECCCSSSCHH-------------HHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCCCCCCccccccccHHH-HHHHHHhCCCEEEEEeCCCCCCch-------------hhHHHHHHHHHHHHHH
Confidence 45678999999876543 234544 345555589999999999865421 2345666666655554
Q ss_pred CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 613 GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 613 ~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
.+.+++.++|||+||.++..++.++|+.++++|...+.
T Consensus 71 --~~~~~v~lvGhS~GG~~a~~~a~~~p~~v~~lv~i~~p 108 (285)
T 1ex9_A 71 --SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAP 108 (285)
T ss_dssp --HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred --hCCCCEEEEEECHhHHHHHHHHHhChhheeEEEEECCC
Confidence 23468999999999999999999999999999988774
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.37 E-value=7.6e-05 Score=79.45 Aligned_cols=177 Identities=7% Similarity=-0.053 Sum_probs=106.8
Q ss_pred cEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEe
Q 003878 275 HEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK 354 (789)
Q Consensus 275 ~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 354 (789)
..|.+++..+...... +..... ...+++++|| .|++.... ...|+++|++++. ....
T Consensus 64 ~~v~viD~~t~~~~~~--i~~~~~---p~~i~~~~~g-~lyv~~~~----~~~v~~iD~~t~~-------------~~~~ 120 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGR--ITGFTS---PRYIHFLSDE-KAYVTQIW----DYRIFIINPKTYE-------------ITGY 120 (328)
T ss_dssp TEEEEEETTTCCEEEE--EECCSS---EEEEEEEETT-EEEEEEBS----CSEEEEEETTTTE-------------EEEE
T ss_pred CEEEEEECcccEEEEE--cCCCCC---CcEEEEeCCC-eEEEEECC----CCeEEEEECCCCe-------------EEEE
Confidence 4688888876543222 222222 3467889999 56554421 3679999998742 0111
Q ss_pred eeccc------cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCC
Q 003878 355 LIDGF------DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV 428 (789)
Q Consensus 355 l~~~~------~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g 428 (789)
+..+. ......+ +++.+|+.... ....|.++|+++++ ....++.. ....++.+++++++++....+.
T Consensus 121 i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~--~~~~v~viD~~t~~-~~~~i~~g--~~p~~i~~~~dG~l~v~~~~~~ 193 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ--YGKYVYVNCWS--YQNRILKIDTETDK-VVDELTIG--IQPTSLVMDKYNKMWTITDGGY 193 (328)
T ss_dssp EECTTCCTTTCBCCCEEE--ETTEEEEEECT--TCCEEEEEETTTTE-EEEEEECS--SCBCCCEECTTSEEEEEBCCBC
T ss_pred EEcCCccccCCCcceEEE--ECCEEEEEcCC--CCCEEEEEECCCCe-EEEEEEcC--CCccceEEcCCCCEEEEECCCc
Confidence 11111 1111223 57788876431 23589999998876 22223322 1234677777678777655430
Q ss_pred --------eEEEEEEECCCCceeeecccCC-eeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 429 --------KYVLQIRDLKNGSLLHQLPIEI-GSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 429 --------~~~L~~~dl~tG~~~~~l~~~~-~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
...|+++|.++++..+.+..+. .....++++++++.++++- + .++.+|.++++
T Consensus 194 ~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~-~-----~v~~~d~~t~~ 255 (328)
T 3dsm_A 194 EGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN-N-----DIWRMPVEADR 255 (328)
T ss_dssp TTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES-S-----SEEEEETTCSS
T ss_pred cCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc-c-----EEEEEECCCCc
Confidence 2589999999887756666542 2355788899999887753 2 89999998885
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00025 Score=78.53 Aligned_cols=257 Identities=14% Similarity=0.047 Sum_probs=150.2
Q ss_pred EeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEE
Q 003878 138 SVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYL 217 (789)
Q Consensus 138 ~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 217 (789)
.+++||++|+.+.. ..+|++||+.+++.+. .+... .+-...+. |.-.++
T Consensus 124 ~~~~~g~~l~sg~~-----dg~i~vwd~~~~~~~~-~~~~h-------~~~v~~~~------------------~~~~~l 172 (445)
T 2ovr_B 124 CLQFCGNRIVSGSD-----DNTLKVWSAVTGKCLR-TLVGH-------TGGVWSSQ------------------MRDNII 172 (445)
T ss_dssp EEEEETTEEEEEET-----TSCEEEEETTTCCEEE-ECCCC-------SSCEEEEE------------------EETTEE
T ss_pred EEEEcCCEEEEEEC-----CCcEEEEECCCCcEEE-EEcCC-------CCCEEEEE------------------ecCCEE
Confidence 46778999885432 3479999999997553 12211 01000011 112367
Q ss_pred eeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC
Q 003878 218 FSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS 287 (789)
Q Consensus 218 ~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~ 287 (789)
+++..+|+..+|.+.. ......+.| +++.|+.... ...|.++++.+...
T Consensus 173 ~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s~s~-------------------dg~i~~wd~~~~~~ 231 (445)
T 2ovr_B 173 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSR-------------------DATLRVWDIETGQC 231 (445)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEET-------------------TSEEEEEESSSCCE
T ss_pred EEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEe--cCCEEEEEeC-------------------CCEEEEEECCCCcE
Confidence 8888999999998754 111234455 4566665432 24688899876532
Q ss_pred CcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEe
Q 003878 288 EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIA 367 (789)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s 367 (789)
...+... ...+..+.+ ||++++....+ ..|.++|+.++. ....+..... ....+.
T Consensus 232 --~~~~~~~--~~~v~~~~~--~~~~l~~~~~d-----g~i~iwd~~~~~-------------~~~~~~~~~~-~v~~~~ 286 (445)
T 2ovr_B 232 --LHVLMGH--VAAVRCVQY--DGRRVVSGAYD-----FMVKVWDPETET-------------CLHTLQGHTN-RVYSLQ 286 (445)
T ss_dssp --EEEEECC--SSCEEEEEE--CSSCEEEEETT-----SCEEEEEGGGTE-------------EEEEECCCSS-CEEEEE
T ss_pred --EEEEcCC--cccEEEEEE--CCCEEEEEcCC-----CEEEEEECCCCc-------------EeEEecCCCC-ceEEEE
Confidence 2233332 233445555 88888776543 348888887631 1222221111 122233
Q ss_pred cCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecc
Q 003878 368 NDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP 447 (789)
Q Consensus 368 ~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~ 447 (789)
.+++.++..+. +..|..+|+.+++....+..+. ..+..+.+.+ .++++...++ .|.+||+.+++....+.
T Consensus 287 ~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~~~--~~l~~~~~dg--~i~vwd~~~~~~~~~~~ 356 (445)
T 2ovr_B 287 FDGIHVVSGSL----DTSIRVWDVETGNCIHTLTGHQ--SLTSGMELKD--NILVSGNADS--TVKIWDIKTGQCLQTLQ 356 (445)
T ss_dssp ECSSEEEEEET----TSCEEEEETTTCCEEEEECCCC--SCEEEEEEET--TEEEEEETTS--CEEEEETTTCCEEEEEC
T ss_pred ECCCEEEEEeC----CCeEEEEECCCCCEEEEEcCCc--ccEEEEEEeC--CEEEEEeCCC--eEEEEECCCCcEEEEEc
Confidence 47887775443 3568999998876334443333 4566677654 4566666676 68999998888766665
Q ss_pred c---CCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 448 I---EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 448 ~---~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
. ....+..++++ ++.++.. + .-+.+..||+.+++
T Consensus 357 ~~~~~~~~v~~~~~~--~~~l~s~-~---~dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 357 GPNKHQSAVTCLQFN--KNFVITS-S---DDGTVKLWDLKTGE 393 (445)
T ss_dssp STTSCSSCEEEEEEC--SSEEEEE-E---TTSEEEEEETTTCC
T ss_pred cCCCCCCCEEEEEEC--CCEEEEE-e---CCCeEEEEECCCCc
Confidence 4 34556666664 4544433 2 34689999999886
|
| >3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-06 Score=96.09 Aligned_cols=113 Identities=19% Similarity=0.087 Sum_probs=75.0
Q ss_pred CccEEEEEcCCCCccCCC-CCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcc---ccc----CCcchHHHHHHHHHH
Q 003878 537 SHPCLLYGYGGFNISVTP-SFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGG---ALA----KKQNCFDDFISASEY 608 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~-~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~---~~~----~~~~~~~D~~~~~~~ 608 (789)
..|+|| .|||.+..... ........+..+.|+.|++.|.||.|...+. .... ... .-....+|+...+++
T Consensus 38 g~Pi~l-~~Ggeg~~~~~~~~~g~~~~lA~~~~~~Vi~~DhRg~G~S~p~-~~~~~~~~~~l~~lt~~q~~~Dl~~~~~~ 115 (446)
T 3n2z_B 38 GGSILF-YTGNEGDIIWFCNNTGFMWDVAEELKAMLVFAEHRYYGESLPF-GDNSFKDSRHLNFLTSEQALADFAELIKH 115 (446)
T ss_dssp TCEEEE-EECCSSCHHHHHHHCHHHHHHHHHHTEEEEEECCTTSTTCCTT-GGGGGSCTTTSTTCSHHHHHHHHHHHHHH
T ss_pred CCCEEE-EeCCCCcchhhhhcccHHHHHHHHhCCcEEEEecCCCCCCCCC-CccccccchhhccCCHHHHHHHHHHHHHH
Confidence 457655 48887753221 0112234555557899999999998865321 0100 011 113356888888888
Q ss_pred HHHcC-CCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 609 LISAG-YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 609 L~~~~-~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
|...- .....++.++|||+||.++++++.++|+++.++|+.++
T Consensus 116 l~~~~~~~~~~p~il~GhS~GG~lA~~~~~~yP~~v~g~i~ssa 159 (446)
T 3n2z_B 116 LKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASA 159 (446)
T ss_dssp HHHHSTTGGGCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETC
T ss_pred HHHhcccCCCCCEEEEEeCHHHHHHHHHHHhhhccccEEEEecc
Confidence 87651 12335899999999999999999999999999988653
|
| >3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-06 Score=92.42 Aligned_cols=119 Identities=15% Similarity=0.024 Sum_probs=79.3
Q ss_pred EEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHH
Q 003878 522 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDD 601 (789)
Q Consensus 522 i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D 601 (789)
+...|+.|.. .+.+..+.||++||..+... ..|...+...|.++||.|+.+|++|.|... .....++
T Consensus 50 L~~~i~~p~~-~~~~~~~pVVLvHG~~~~~~-~~w~~~l~~~L~~~Gy~V~a~DlpG~G~~~-----------~~~~~~~ 116 (316)
T 3icv_A 50 LDAGLTCQGA-SPSSVSKPILLVPGTGTTGP-QSFDSNWIPLSAQLGYTPCWISPPPFMLND-----------TQVNTEY 116 (316)
T ss_dssp HHHTEEETTB-BTTBCSSEEEEECCTTCCHH-HHHTTTHHHHHHHTTCEEEEECCTTTTCSC-----------HHHHHHH
T ss_pred HhhhEeCCCC-CCCCCCCeEEEECCCCCCcH-HHHHHHHHHHHHHCCCeEEEecCCCCCCCc-----------HHHHHHH
Confidence 3344555633 23345567889999765431 123212345666689999999999865311 1123467
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC---CCceeEEEecCCcccc
Q 003878 602 FISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR---PDLFGCALAHVGVMDM 655 (789)
Q Consensus 602 ~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~---pd~f~a~v~~~p~~d~ 655 (789)
+.+.++.+.+. ...+++.++|||+||+++..++..+ |++++.+|+..|...-
T Consensus 117 la~~I~~l~~~--~g~~~v~LVGHSmGGlvA~~al~~~p~~~~~V~~lV~lapp~~G 171 (316)
T 3icv_A 117 MVNAITTLYAG--SGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYKG 171 (316)
T ss_dssp HHHHHHHHHHH--TTSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTTC
T ss_pred HHHHHHHHHHH--hCCCceEEEEECHHHHHHHHHHHhccccchhhceEEEECCCCCC
Confidence 77778887765 2336899999999999998777764 5899999998876543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.34 E-value=4e-05 Score=81.44 Aligned_cols=204 Identities=11% Similarity=0.022 Sum_probs=124.0
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecC---CcE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTED---GQY 313 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpD---G~~ 313 (789)
...++|+||++.++.+.... .....|++|++.+........... ...+..+.|+|+ |++
T Consensus 21 v~~~~~~p~~~~l~~~~s~~---------------~~d~~v~iw~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~ 82 (357)
T 3i2n_A 21 VFDCKWVPCSAKFVTMGNFA---------------RGTGVIQLYEIQHGDLKLLREIEK---AKPIKCGTFGATSLQQRY 82 (357)
T ss_dssp EEEEEECTTSSEEEEEEC-----------------CCCEEEEEEEECSSSEEEEEEEEE---SSCEEEEECTTCCTTTCC
T ss_pred eEEEEEcCCCceEEEecCcc---------------CCCcEEEEEeCCCCcccceeeecc---cCcEEEEEEcCCCCCCce
Confidence 57899999998888764210 023468899987654332222222 233568899999 688
Q ss_pred EEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeE-------EEecCCCEEEEEECCCCCCceE
Q 003878 314 LVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYE-------VIANDDTVFTFLTNKDAPKYKI 386 (789)
Q Consensus 314 l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~s~dG~~l~~~tn~~~~~~~L 386 (789)
|+....+ ..|.++++.++. .+...+......... .|+++++.|+..+. ++.|
T Consensus 83 l~~~~~d-----g~i~iwd~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~----d~~i 141 (357)
T 3i2n_A 83 LATGDFG-----GNLHIWNLEAPE------------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR----DGTV 141 (357)
T ss_dssp EEEEETT-----SCEEEECTTSCS------------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET----TSCE
T ss_pred EEEecCC-----CeEEEEeCCCCC------------ccEEEEEecccceEEEeeccccccCCCccEEEEEeC----CCeE
Confidence 8766533 448889988742 012222211111111 24688888775443 3578
Q ss_pred EEEECCCCC-CeEEeccCCC--CceeeeEE----EecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecc
Q 003878 387 IRVDLKEPN-DWFEVIPEAE--RDVLESAT----AVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISAR 459 (789)
Q Consensus 387 ~~~dl~~~~-~~~~l~~~~~--~~~i~~v~----~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s 459 (789)
..+|+.+++ ....+.++.. ...+..+. +++++.++++...++ .|++||+.+++.. ........+..+.++
T Consensus 142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~-~~~~~~~~v~~~~~~ 218 (357)
T 3i2n_A 142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNG--DIKLFDLRNMALR-WETNIKNGVCSLEFD 218 (357)
T ss_dssp EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTS--EEEEEETTTTEEE-EEEECSSCEEEEEES
T ss_pred EEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCC--eEEEEECccCcee-eecCCCCceEEEEcC
Confidence 899998765 3444433332 22455665 445567777777776 7999999877653 222234567788888
Q ss_pred c---CCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 460 R---EDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 460 ~---d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
| +++.++... .-+.++.||+.++
T Consensus 219 ~~~~~~~~l~~~~----~dg~i~i~d~~~~ 244 (357)
T 3i2n_A 219 RKDISMNKLVATS----LEGKFHVFDMRTQ 244 (357)
T ss_dssp CSSSSCCEEEEEE----STTEEEEEEEEEE
T ss_pred CCCCCCCEEEEEC----CCCeEEEEeCcCC
Confidence 8 788766543 3468888988665
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.33 E-value=6.8e-05 Score=82.56 Aligned_cols=78 Identities=10% Similarity=0.156 Sum_probs=52.3
Q ss_pred EEecCCCEEEEEECCC------CCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCE-EEEEEEeCCeEEEEEEEC
Q 003878 365 VIANDDTVFTFLTNKD------APKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~------~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl 437 (789)
.+++||+++|+..... .+...|.++|+++.+....+ +-. ..-.++.++++++ ++++.... ...|.++|+
T Consensus 325 a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I-~vg--~~P~gia~spDg~~~lyv~n~~-s~~VsVID~ 400 (426)
T 3c75_H 325 AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKI-ELG--HEIDSINVSQDAEPLLYALSAG-TQTLHIYDA 400 (426)
T ss_dssp EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE-EEE--EEECEEEECCSSSCEEEEEETT-TTEEEEEET
T ss_pred EEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEE-ECC--CCcCeEEEccCCCEEEEEEcCC-CCeEEEEEC
Confidence 4789999999864311 12357999999988733333 221 2345788888655 66666532 247999999
Q ss_pred CCCceeeec
Q 003878 438 KNGSLLHQL 446 (789)
Q Consensus 438 ~tG~~~~~l 446 (789)
++++.++.|
T Consensus 401 ~t~kvv~tI 409 (426)
T 3c75_H 401 ATGEELRSV 409 (426)
T ss_dssp TTCCEEEEE
T ss_pred CCCCEEEEe
Confidence 999887776
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=98.33 E-value=8.6e-05 Score=77.57 Aligned_cols=202 Identities=12% Similarity=-0.006 Sum_probs=120.2
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecC--CcEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTED--GQYL 314 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpD--G~~l 314 (789)
...++|+|||+.|+-...+ ..|++|++.+...+....+.. +...+..+.|+|+ |++|
T Consensus 12 V~~~~~s~~g~~las~s~D-------------------~~v~iw~~~~~~~~~~~~l~g--H~~~V~~v~~s~~~~g~~l 70 (297)
T 2pm7_B 12 IHDAVMDYYGKRMATCSSD-------------------KTIKIFEVEGETHKLIDTLTG--HEGPVWRVDWAHPKFGTIL 70 (297)
T ss_dssp EEEEEECTTSSEEEEEETT-------------------SCEEEEEBCSSCBCCCEEECC--CSSCEEEEEECCGGGCSEE
T ss_pred eEEEEECCCCCEEEEEeCC-------------------CEEEEEecCCCCcEEEEEEcc--ccCCeEEEEecCCCcCCEE
Confidence 4688999999999866543 248888886533232333433 3344668899864 8887
Q ss_pred EEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-eeEEEecC--CCEEEEEECCCCCCceEEEEEC
Q 003878 315 VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIAND--DTVFTFLTNKDAPKYKIIRVDL 391 (789)
Q Consensus 315 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~d--G~~l~~~tn~~~~~~~L~~~dl 391 (789)
+-.+. ...|.++|+.++. ......+...... .-..|+|+ |..|+..+. +..|..+|+
T Consensus 71 ~s~s~-----D~~v~iWd~~~~~-----------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~----d~~v~~wd~ 130 (297)
T 2pm7_B 71 ASCSY-----DGKVMIWKEENGR-----------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS----DGKVSVVEF 130 (297)
T ss_dssp EEEET-----TTEEEEEEBSSSC-----------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEET----TSEEEEEEB
T ss_pred EEEcC-----CCEEEEEEcCCCc-----------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC----CCcEEEEEe
Confidence 75543 2458888987642 0111112111111 12348887 777665433 357888888
Q ss_pred CCCCC--eEEeccCCCCceeeeEEEecC-------------CEEEEEEEeCCeEEEEEEECCCCc----eeeecccCCee
Q 003878 392 KEPND--WFEVIPEAERDVLESATAVNL-------------NQMIVSYLSDVKYVLQIRDLKNGS----LLHQLPIEIGS 452 (789)
Q Consensus 392 ~~~~~--~~~l~~~~~~~~i~~v~~~~~-------------~~lv~~~~~~g~~~L~~~dl~tG~----~~~~l~~~~~~ 452 (789)
.++.. ...+..+. ..+..+.++++ +.++++...++ .|++||+.+++ ....+..+...
T Consensus 131 ~~~~~~~~~~~~~h~--~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~--~v~lwd~~~~~~~~~~~~~l~~H~~~ 206 (297)
T 2pm7_B 131 KENGTTSPIIIDAHA--IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN--LVKIWKYNSDAQTYVLESTLEGHSDW 206 (297)
T ss_dssp CSSSCBCCEEEECCS--SCEEEEEECCCC------------CCEEEEEETTS--CEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred cCCCceeeeeeeccc--CccceEeecCCcccccccCCCCCCcceEEEEcCCC--cEEEEEEcCCCceEEEEEEecCCCCc
Confidence 76531 12232333 45677888763 24777888887 57778876554 22344444667
Q ss_pred EEEeecccCC--cEEEEEEcCCCCCcEEEEEECCCC
Q 003878 453 VNAISARRED--SVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 453 v~~~s~s~d~--~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
|..++++|++ ..++++.+ .-.++..||+.++
T Consensus 207 V~~v~~sp~~~~~~~las~s---~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 207 VRDVAWSPTVLLRSYMASVS---QDRTCIIWTQDNE 239 (297)
T ss_dssp EEEEEECCCCSSSEEEEEEE---TTSCEEEEEESST
T ss_pred eEEEEECCCCCCceEEEEEE---CCCcEEEEEeCCC
Confidence 8889999985 34444443 2356778887654
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00026 Score=81.21 Aligned_cols=212 Identities=10% Similarity=0.036 Sum_probs=118.1
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...+..|+++..+++.... ..+|++.+..+... ..+...+. ..+...+.|+|||++++.
T Consensus 300 va~i~~s~~~~~~vv~~~~------------------~g~v~~vd~~~~~~--~~v~~i~~-~~~~~d~~~~pdgr~~~v 358 (567)
T 1qks_A 300 VAAILASHYRPEFIVNVKE------------------TGKILLVDYTDLNN--LKTTEISA-ERFLHDGGLDGSHRYFIT 358 (567)
T ss_dssp EEEEEECSSSSEEEEEETT------------------TTEEEEEETTCSSE--EEEEEEEC-CSSEEEEEECTTSCEEEE
T ss_pred eEEEEEcCCCCEEEEEecC------------------CCeEEEEecCCCcc--ceeeeeec-cccccCceECCCCCEEEE
Confidence 3567778888877766422 23577777654321 11222111 123446789999999987
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEee-ec--cccceeEEEecCCCEEEEEECCCCCCceEEEEECCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL-ID--GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE 393 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l-~~--~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~ 393 (789)
.... .+.|.++|+++++ ......+ -. ........+.|+++.++++++.+ ...|.+++.+.
T Consensus 359 a~~~----sn~V~ViD~~t~k-----------l~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g--~~~Vsvid~~~ 421 (567)
T 1qks_A 359 AANA----RNKLVVIDTKEGK-----------LVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMG--DDSVALIGTDP 421 (567)
T ss_dssp EEGG----GTEEEEEETTTTE-----------EEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSS--SSEEEEEECCT
T ss_pred EeCC----CCeEEEEECCCCc-----------EEEEEeccCcCCCCccceeeECCCCCcEEEeCCCC--CCeEEEecCCC
Confidence 6632 4679999998852 0001111 00 00011123577777887766553 35688888876
Q ss_pred CC----CeEEe--ccCCCCceeeeEEEecC-CEEEEEEEeCC----eEEEEEEECCCC-----cee-eecc------cC-
Q 003878 394 PN----DWFEV--IPEAERDVLESATAVNL-NQMIVSYLSDV----KYVLQIRDLKNG-----SLL-HQLP------IE- 449 (789)
Q Consensus 394 ~~----~~~~l--~~~~~~~~i~~v~~~~~-~~lv~~~~~~g----~~~L~~~dl~tG-----~~~-~~l~------~~- 449 (789)
.+ .|+.+ ++...... ..+..+++ .++++...-+. ...|.++|+++. ... +.+. ++
T Consensus 422 ~~~~~~~~kvv~~i~~~g~g~-~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~ 500 (567)
T 1qks_A 422 EGHPDNAWKILDSFPALGGGS-LFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITE 500 (567)
T ss_dssp TTCTTTBTSEEEEEECSCSCC-CCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCS
T ss_pred CCCccccCEEEEEEecCCCCC-EEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCC
Confidence 32 13322 12111111 12445564 45665442221 237899998755 211 2232 11
Q ss_pred -CeeEEEeecccCCcEEEEEE-cCCCCCcEEEEEECCCCC
Q 003878 450 -IGSVNAISARREDSVVFISF-TSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 450 -~~~v~~~s~s~d~~~l~~~~-ss~~~P~~ly~~dl~tg~ 487 (789)
...+..+.++++|++++++. +.-...+.|..+|.+|++
T Consensus 501 ~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 501 GQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred CCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence 22455678999999999975 333467899999998885
|
| >2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=4.1e-06 Score=85.35 Aligned_cols=91 Identities=10% Similarity=-0.051 Sum_probs=62.7
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
..|.|+++||..+.. ..|.. +...|. .++.|+.++++|.+. ..+|+.+.++.+. .
T Consensus 21 ~~~~l~~~hg~~~~~--~~~~~-~~~~l~-~~~~v~~~d~~g~~~----------------~~~~~~~~i~~~~-----~ 75 (244)
T 2cb9_A 21 GGKNLFCFPPISGFG--IYFKD-LALQLN-HKAAVYGFHFIEEDS----------------RIEQYVSRITEIQ-----P 75 (244)
T ss_dssp CSSEEEEECCTTCCG--GGGHH-HHHHTT-TTSEEEEECCCCSTT----------------HHHHHHHHHHHHC-----S
T ss_pred CCCCEEEECCCCCCH--HHHHH-HHHHhC-CCceEEEEcCCCHHH----------------HHHHHHHHHHHhC-----C
Confidence 457889999976653 23333 445566 789999999997421 2355555554432 1
Q ss_pred CCcEEEEeeChHHHHHHHHHHhC---CCceeEEEecCCc
Q 003878 617 SRKLCIEGGSNGGLLVGACINQR---PDLFGCALAHVGV 652 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~---pd~f~a~v~~~p~ 652 (789)
..++.++|+|+||.++..++.+. ++...++|...+.
T Consensus 76 ~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~lvl~~~~ 114 (244)
T 2cb9_A 76 EGPYVLLGYSAGGNLAFEVVQAMEQKGLEVSDFIIVDAY 114 (244)
T ss_dssp SSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCC
T ss_pred CCCEEEEEECHhHHHHHHHHHHHHHcCCCccEEEEEcCC
Confidence 25799999999999999888764 5678777776554
|
| >1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 | Back alignment and structure |
|---|
Probab=98.31 E-value=8.1e-07 Score=98.63 Aligned_cols=113 Identities=10% Similarity=-0.011 Sum_probs=76.9
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHH-HHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcC
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVS-RTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG 613 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~-~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~ 613 (789)
+...|++|++||..+.. ...|... ...+++..+|.|+++|+||+|.... ..+. ..-...-+|+.+.+++|.++.
T Consensus 66 ~~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~y--~~~~--~~~~~v~~~la~ll~~L~~~~ 140 (449)
T 1hpl_A 66 NTGRKTRFIIHGFIDKG-EESWLSTMCQNMFKVESVNCICVDWKSGSRTAY--SQAS--QNVRIVGAEVAYLVGVLQSSF 140 (449)
T ss_dssp CTTSEEEEEECCCCCTT-CTTHHHHHHHHHHHHCCEEEEEEECHHHHSSCH--HHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEecCCCCC-CccHHHHHHHHHHhcCCeEEEEEeCCcccCCcc--HHHH--HHHHHHHHHHHHHHHHHHHhc
Confidence 45679999999965432 3344432 2345554799999999999765321 1110 000112246666777776442
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 614 YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 614 ~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
..+.+++.++|||+||.+++.++.++|++++.++...|.
T Consensus 141 g~~~~~v~LIGhSlGg~vA~~~a~~~p~~v~~iv~Ldpa 179 (449)
T 1hpl_A 141 DYSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGLDPA 179 (449)
T ss_dssp CCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCB
T ss_pred CCCcccEEEEEECHhHHHHHHHHHhcchhcceeeccCcc
Confidence 346789999999999999999999999999999877664
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=98.31 E-value=7.9e-05 Score=79.00 Aligned_cols=153 Identities=14% Similarity=0.123 Sum_probs=86.7
Q ss_pred EEEec---CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc---cce-eEEEecCCCEEEEEE
Q 003878 305 GHVTE---DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF---DAQ-YEVIANDDTVFTFLT 377 (789)
Q Consensus 305 ~~~Sp---DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~---~~~-~~~~s~dG~~l~~~t 377 (789)
+++|| ||..|+-.+. ...|.++|++++. .+..+..+. ... ...|+|||+.++..+
T Consensus 184 l~fs~~~g~~~~LaSgS~-----D~TIkIWDl~TGk-------------~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s 245 (356)
T 2w18_A 184 LTFAEVQGMQEALLGTTI-----MNNIVIWNLKTGQ-------------LLKKMHIDDSYQASVCHKAYSEMGLLFIVLS 245 (356)
T ss_dssp EEEEEEETSTTEEEEEET-----TSEEEEEETTTCC-------------EEEEEECCC---CCCEEEEEEETTEEEEEEC
T ss_pred EEeeccCCCCceEEEecC-----CCcEEEEECCCCc-------------EEEEEcCCCcceeeeEEEEECCCCCEEEEec
Confidence 56666 6677765443 3558999999853 123332211 011 124899998776544
Q ss_pred CC--------CCCCceEEEEECCCCCCeEEe---ccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec
Q 003878 378 NK--------DAPKYKIIRVDLKEPNDWFEV---IPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL 446 (789)
Q Consensus 378 n~--------~~~~~~L~~~dl~~~~~~~~l---~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l 446 (789)
+. +..+..|..+|..++.....+ +|......+.+.... +.++++...|+ .|++||+.+|+.+..+
T Consensus 246 ~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~Dg--TIkIWDl~tGk~l~tL 321 (356)
T 2w18_A 246 HPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSG--TIAIWDLLLGQCTALL 321 (356)
T ss_dssp ------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTS--CEEEEETTTCSEEEEE
T ss_pred cCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCC--cEEEEECCCCcEEEEe
Confidence 21 234577888898877522222 132211112122222 45677777776 7999999999887777
Q ss_pred ccCCe-eEEEeecccCCcEEEEEEcCCCCCcEEEEEEC
Q 003878 447 PIEIG-SVNAISARREDSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 447 ~~~~~-~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl 483 (789)
..+.. .+..++++||++.++ +. + .-.++++||+
T Consensus 322 ~gH~~~vvs~vafSPDG~~La-SG-S--~D~TIklWd~ 355 (356)
T 2w18_A 322 PPVSDQHWSFVKWSGTDSHLL-AG-Q--KDGNIFVYHY 355 (356)
T ss_dssp CCC--CCCCEEEECSSSSEEE-EE-C--TTSCEEEEEE
T ss_pred cCCCCCeEEEEEECCCCCEEE-EE-E--CCCcEEEecC
Confidence 64433 344578999998665 32 2 3456777664
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.6e-05 Score=90.54 Aligned_cols=179 Identities=9% Similarity=0.035 Sum_probs=105.0
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEE--EEecCC-cE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSG--HVTEDG-QY 313 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~--~~SpDG-~~ 313 (789)
..+++|+|++ .|+.... ...|.+|++.++... ...+... ...+.++ .++|+| +.
T Consensus 269 v~sv~~s~~~-~lasgs~-------------------DgtV~lWD~~~~~~~-~~~~~~H--~~~V~sv~~~~s~~g~~~ 325 (524)
T 2j04_B 269 ITTFDFLSPT-TVVCGFK-------------------NGFVAEFDLTDPEVP-SFYDQVH--DSYILSVSTAYSDFEDTV 325 (524)
T ss_dssp EEEEEESSSS-EEEEEET-------------------TSEEEEEETTBCSSC-SEEEECS--SSCEEEEEEECCTTSCCE
T ss_pred EEEEEecCCC-eEEEEeC-------------------CCEEEEEECCCCCCc-eEEeecc--cccEEEEEEEcCCCCCeE
Confidence 5789999875 5654432 246899999765322 2233333 3345566 578998 55
Q ss_pred EEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc---cceeEEEecCCCEEEEEECCCCCCceEEEEE
Q 003878 314 LVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF---DAQYEVIANDDTVFTFLTNKDAPKYKIIRVD 390 (789)
Q Consensus 314 l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~d 390 (789)
|+-.+. ...|.++|+.++. ....+.... ......|+|+|+.|+. +. .+..|..+|
T Consensus 326 laS~S~-----D~tvklWD~~~~~-------------~~~~~~~~~~~~~v~~v~fsp~~~~l~s-~~---~d~tv~lwd 383 (524)
T 2j04_B 326 VSTVAV-----DGYFYIFNPKDIA-------------TTKTTVSRFRGSNLVPVVYCPQIYSYIY-SD---GASSLRAVP 383 (524)
T ss_dssp EEEEET-----TSEEEEECGGGHH-------------HHCEEEEECSCCSCCCEEEETTTTEEEE-EC---SSSEEEEEE
T ss_pred EEEecc-----CCeEEEEECCCCC-------------cccccccccccCcccceEeCCCcCeEEE-eC---CCCcEEEEE
Confidence 554332 3458888987631 111111111 1112458999987553 22 234688899
Q ss_pred CCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-----CeeEEEeecccCCcEE
Q 003878 391 LKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-----IGSVNAISARREDSVV 465 (789)
Q Consensus 391 l~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-----~~~v~~~s~s~d~~~l 465 (789)
+.++.....+..+. ..+.++++++++.++++...|+ .|++|++.. +........ ...+..++++++++.+
T Consensus 384 ~~~~~~~~~l~gH~--~~V~sva~Sp~g~~l~Sgs~Dg--tv~lwd~~~-~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~ 458 (524)
T 2j04_B 384 SRAAFAVHPLVSRE--TTITAIGVSRLHPMVLAGSADG--SLIITNAAR-RLLHGIKNSSATQKSLRLWKWDYSIKDDKY 458 (524)
T ss_dssp TTCTTCCEEEEECS--SCEEEEECCSSCCBCEEEETTT--EEECCBSCS-STTTCC------CCCCEEEECBCCSSSCEE
T ss_pred CcccccceeeecCC--CceEEEEeCCCCCeEEEEECCC--EEEEEechH-hhccccccCccceeeeEEEEeccCCCCCeE
Confidence 98765345555554 5678999999777888888888 688888863 221111100 1124467788888744
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.30 E-value=5.8e-06 Score=90.54 Aligned_cols=50 Identities=8% Similarity=-0.129 Sum_probs=35.9
Q ss_pred CceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEEC
Q 003878 383 KYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 383 ~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl 437 (789)
++.|..+|+.+++....+..+. ..+.+++|+++++.+++..++| +.++.+
T Consensus 338 Dg~V~lwd~~~~~~~~~~~~~~--~~V~svafspdG~~LA~as~~G---v~lvrL 387 (393)
T 4gq1_A 338 HGLIQLINTYEKDSNSIPIQLG--MPIVDFCWHQDGSHLAIATEGS---VLLTRL 387 (393)
T ss_dssp TTEEEEEETTCTTCCEEEEECS--SCEEEEEECTTSSEEEEEESSE---EEEEEE
T ss_pred CCEEEEEECCCCcEEEEecCCC--CcEEEEEEcCCCCEEEEEeCCC---eEEEEE
Confidence 5789999998876344444444 5688999999888888888776 444444
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00051 Score=71.19 Aligned_cols=214 Identities=12% Similarity=0.066 Sum_probs=133.1
Q ss_pred EEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCC
Q 003878 216 YLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTK 285 (789)
Q Consensus 216 ~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~ 285 (789)
+++++..+|...+|.+.. .-....++|+||++.|+....+ ..+..+++...
T Consensus 31 ~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------------------g~i~~~~~~~~ 91 (313)
T 3odt_A 31 KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKD-------------------TMINGVPLFAT 91 (313)
T ss_dssp EEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETT-------------------SCEEEEETTCC
T ss_pred EEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCC-------------------CeEEEEEeeec
Confidence 577888999999998755 2224678999999999876543 23677777544
Q ss_pred CCCc-EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-
Q 003878 286 QSED-ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY- 363 (789)
Q Consensus 286 ~~~~-~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~- 363 (789)
.... ...+.. +...+..+.+ +++.++.... ...|.++|... ....+........
T Consensus 92 ~~~~~~~~~~~--~~~~i~~~~~--~~~~l~~~~~-----d~~i~~~d~~~---------------~~~~~~~~~~~v~~ 147 (313)
T 3odt_A 92 SGEDPLYTLIG--HQGNVCSLSF--QDGVVISGSW-----DKTAKVWKEGS---------------LVYNLQAHNASVWD 147 (313)
T ss_dssp TTSCC-CEECC--CSSCEEEEEE--ETTEEEEEET-----TSEEEEEETTE---------------EEEEEECCSSCEEE
T ss_pred CCCCcccchhh--cccCEEEEEe--cCCEEEEEeC-----CCCEEEEcCCc---------------EEEecccCCCceeE
Confidence 3221 222222 2333556666 6777766543 34578888221 1112222111122
Q ss_pred EEEec-CCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce
Q 003878 364 EVIAN-DDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 364 ~~~s~-dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
..+.+ +++.++..+. ++.|..+|.... ...+.. .....+..+.+++++. +++...++ .|++||+.+++.
T Consensus 148 ~~~~~~~~~~l~~~~~----d~~i~i~d~~~~--~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~dg--~i~i~d~~~~~~ 217 (313)
T 3odt_A 148 AKVVSFSENKFLTASA----DKTIKLWQNDKV--IKTFSG-IHNDVVRHLAVVDDGH-FISCSNDG--LIKLVDMHTGDV 217 (313)
T ss_dssp EEEEETTTTEEEEEET----TSCEEEEETTEE--EEEECS-SCSSCEEEEEEEETTE-EEEEETTS--EEEEEETTTCCE
T ss_pred EEEccCCCCEEEEEEC----CCCEEEEecCce--EEEEec-cCcccEEEEEEcCCCe-EEEccCCC--eEEEEECCchhh
Confidence 23555 7887776543 356888884322 233332 2235678899988666 66677776 799999998887
Q ss_pred eeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 443 LHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 443 ~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
...+..+.+.+..+.+++++. ++ +. ..-+.++.||+.+++
T Consensus 218 ~~~~~~~~~~i~~~~~~~~~~-l~-~~---~~dg~v~iwd~~~~~ 257 (313)
T 3odt_A 218 LRTYEGHESFVYCIKLLPNGD-IV-SC---GEDRTVRIWSKENGS 257 (313)
T ss_dssp EEEEECCSSCEEEEEECTTSC-EE-EE---ETTSEEEEECTTTCC
T ss_pred hhhhhcCCceEEEEEEecCCC-EE-EE---ecCCEEEEEECCCCc
Confidence 666765667788889999884 33 22 235789999998885
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00019 Score=74.93 Aligned_cols=160 Identities=8% Similarity=0.121 Sum_probs=94.1
Q ss_pred EEEEEecCCcEEEEEEEcC-----------CCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEe---
Q 003878 303 FSGHVTEDGQYLVMCIEEN-----------CDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIA--- 367 (789)
Q Consensus 303 ~~~~~SpDG~~l~~~~~~~-----------~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s--- 367 (789)
..+.+++||+.. +..... ......|+.++.+ +. ...+..... .....++
T Consensus 120 ~~i~~d~~g~l~-v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--------------~~~~~~~~~~~~~i~~~~~~ 183 (314)
T 1pjx_A 120 NDCAFDYEGNLW-ITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--------------MIQVDTAFQFPNGIAVRHMN 183 (314)
T ss_dssp CEEEECTTSCEE-EEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--------------EEEEEEEESSEEEEEEEECT
T ss_pred cCEEECCCCCEE-EEecCcccccccccccccCCCCeEEEECCC-CC--------------EEEeccCCCCcceEEEeccc
Confidence 467899999754 443211 0012578888865 21 111211111 1223478
Q ss_pred -cCCCEEEEEECCCCCCceEEEEECC-CCC--CeEEe--ccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCc
Q 003878 368 -NDDTVFTFLTNKDAPKYKIIRVDLK-EPN--DWFEV--IPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGS 441 (789)
Q Consensus 368 -~dG~~l~~~tn~~~~~~~L~~~dl~-~~~--~~~~l--~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~ 441 (789)
++|+.+|+.... +.+|++++++ ++. ....+ ++........++.+.+++.+++....++ .|.+++.++|+
T Consensus 184 d~dg~~l~v~~~~---~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~--~i~~~d~~~g~ 258 (314)
T 1pjx_A 184 DGRPYQLIVAETP---TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS--HIEVFGPDGGQ 258 (314)
T ss_dssp TSCEEEEEEEETT---TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT--EEEEECTTCBS
T ss_pred CCCCCEEEEEECC---CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC--EEEEEcCCCCc
Confidence 888878776433 3678888875 232 00111 1211103456788887677877765554 79999998776
Q ss_pred eeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 442 LLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 442 ~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
....+..+...+..+.++++++.++++... ...++++++.+.
T Consensus 259 ~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~---~~~l~~~~~~~~ 300 (314)
T 1pjx_A 259 PKMRIRCPFEKPSNLHFKPQTKTIFVTEHE---NNAVWKFEWQRN 300 (314)
T ss_dssp CSEEEECSSSCEEEEEECTTSSEEEEEETT---TTEEEEEECSSC
T ss_pred EeEEEeCCCCCceeEEECCCCCEEEEEeCC---CCeEEEEeCCCC
Confidence 655565554556677788899877776432 368999988643
|
| >1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.6e-06 Score=96.36 Aligned_cols=112 Identities=9% Similarity=0.060 Sum_probs=74.5
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHH-HHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcC
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSR-TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAG 613 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~-~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~ 613 (789)
+...|++|++||..+.. ...|.... ..++...||.|+++|+||+|... +..+. ..-...-+|+.+.+++|.++.
T Consensus 67 ~~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~g~s~--y~~~~--~~~~~~a~~l~~ll~~L~~~~ 141 (450)
T 1rp1_A 67 QTDKKTRFIIHGFIDKG-EENWLLDMCKNMFKVEEVNCICVDWKKGSQTS--YTQAA--NNVRVVGAQVAQMLSMLSANY 141 (450)
T ss_dssp CTTSEEEEEECCCCCTT-CTTHHHHHHHHHTTTCCEEEEEEECHHHHSSC--HHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEccCCCCC-CcchHHHHHHHHHhcCCeEEEEEeCccccCCc--chHHH--HHHHHHHHHHHHHHHHHHHhc
Confidence 34579999999965443 22444322 34555348999999999976432 11110 001112356666777776432
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 614 YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 614 ~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
..+.+++.++|||+||.+++.++.++|+ ++.++...|.
T Consensus 142 g~~~~~v~LVGhSlGg~vA~~~a~~~p~-v~~iv~Ldpa 179 (450)
T 1rp1_A 142 SYSPSQVQLIGHSLGAHVAGEAGSRTPG-LGRITGLDPV 179 (450)
T ss_dssp CCCGGGEEEEEETHHHHHHHHHHHTSTT-CCEEEEESCC
T ss_pred CCChhhEEEEEECHhHHHHHHHHHhcCC-cccccccCcc
Confidence 3467899999999999999999999999 8888876554
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.22 E-value=5.6e-05 Score=80.49 Aligned_cols=220 Identities=11% Similarity=0.029 Sum_probs=129.3
Q ss_pred EEEeeeccccceeeeeeec-----c----------cccceEEEEeC----CcEEEEEEccCCCCCCCCCCCccccCCccc
Q 003878 215 FYLFSLVKSTIYSFWSVVS-----Q----------FKFSSIAWTHD----SKGFFYSRYPAPKEGKDMDAGTETDSNLYH 275 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~-----~----------~~~~~~~wspD----g~~i~y~~~~~~~~~~~~~~~~~~~~~~~~ 275 (789)
..++.+..+|...||.+.. . -....++|+|| |+.|+.... ..
T Consensus 35 ~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~-------------------dg 95 (366)
T 3k26_A 35 PLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS-------------------RG 95 (366)
T ss_dssp CEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET-------------------TC
T ss_pred ceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC-------------------CC
Confidence 4566777777888888774 1 12467899999 555655432 23
Q ss_pred EEEEEECCCCCCCcEEEEecCCCCeeEEEEEEec-CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEe
Q 003878 276 EFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE-DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK 354 (789)
Q Consensus 276 ~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 354 (789)
.|.+|++.+.. .+..+.. +...+..+.|+| +++.|+....+ ..|+++|+.++. ....
T Consensus 96 ~i~v~d~~~~~--~~~~~~~--~~~~i~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~-------------~~~~ 153 (366)
T 3k26_A 96 IIRIINPITMQ--CIKHYVG--HGNAINELKFHPRDPNLLLSVSKD-----HALRLWNIQTDT-------------LVAI 153 (366)
T ss_dssp EEEEECTTTCC--EEEEEES--CCSCEEEEEECSSCTTEEEEEETT-----SCEEEEETTTTE-------------EEEE
T ss_pred EEEEEEchhce--EeeeecC--CCCcEEEEEECCCCCCEEEEEeCC-----CeEEEEEeecCe-------------EEEE
Confidence 68888887643 2333333 234467899999 88888766543 348899998742 1111
Q ss_pred e---eccccce-eEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEec--------------------------cCC
Q 003878 355 L---IDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVI--------------------------PEA 404 (789)
Q Consensus 355 l---~~~~~~~-~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~--------------------------~~~ 404 (789)
+ ....... ...|+|+|+.|+..+. ++.|..+|+.+++....+. ...
T Consensus 154 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (366)
T 3k26_A 154 FGGVEGHRDEVLSADYDLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 229 (366)
T ss_dssp ECSTTSCSSCEEEEEECTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSS
T ss_pred ecccccccCceeEEEECCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccC
Confidence 1 1111112 2348899998876543 3578888987643100000 000
Q ss_pred CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce--------------eeecccCCeeEEEeecccC--CcEEEEE
Q 003878 405 ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL--------------LHQLPIEIGSVNAISARRE--DSVVFIS 468 (789)
Q Consensus 405 ~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~--------------~~~l~~~~~~v~~~s~s~d--~~~l~~~ 468 (789)
....+..+.+.+ + ++++...++ .|.+||+.+++. ...+..+...+..+.++++ +..++..
T Consensus 230 ~~~~v~~~~~~~-~-~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~ 305 (366)
T 3k26_A 230 HRNYVDCVRWLG-D-LILSKSCEN--AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALG 305 (366)
T ss_dssp CSSCCCEEEEET-T-EEEEECSSS--EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEE
T ss_pred CcceEEEEEEcC-C-EEEEEecCC--EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEE
Confidence 124567788874 4 555566665 688899876543 1122222233444566777 7766543
Q ss_pred EcCCCCCcEEEEEECCCCC
Q 003878 469 FTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 469 ~ss~~~P~~ly~~dl~tg~ 487 (789)
..-+.++.||+.+++
T Consensus 306 ----~~dg~i~vwd~~~~~ 320 (366)
T 3k26_A 306 ----NQVGKLYVWDLEVED 320 (366)
T ss_dssp ----CTTSCEEEEECCSSS
T ss_pred ----ecCCcEEEEECCCCC
Confidence 234689999998774
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00019 Score=77.59 Aligned_cols=251 Identities=12% Similarity=0.025 Sum_probs=127.9
Q ss_pred EEeCCCCcEEEEEEecC-CceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeE
Q 003878 137 VSVSEDAKYLAYALSYS-GSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFF 215 (789)
Q Consensus 137 ~~~SpDg~~la~~~~~~-g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 215 (789)
....|||+++ |..+.. .....++.++|++|++.+.. +. + +
T Consensus 38 ~~~~pd~~~v-yV~~~~~~~~~~~V~ViD~~t~~v~~~-I~-v-----------------------G------------- 78 (386)
T 3sjl_D 38 EAPAPDARRV-YVNDPAHFAAVTQQFVIDGEAGRVIGM-ID-G-----------------------G------------- 78 (386)
T ss_dssp CCCCCCTTEE-EEEECGGGCSSEEEEEEETTTTEEEEE-EE-E-----------------------C-------------
T ss_pred eccCCCCCEE-EEEcCcccCCCCEEEEEECCCCeEEEE-EE-C-----------------------C-------------
Confidence 3468999986 555543 11125899999999987642 22 1 1
Q ss_pred EEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEec
Q 003878 216 YLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD 295 (789)
Q Consensus 216 ~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~ 295 (789)
....+++||||+.+|++...... .....+...|.+++..+......+....
T Consensus 79 --------------------~~P~va~spDG~~lyVan~~~~r---------~~~G~~~~~VsviD~~t~~v~~~I~v~~ 129 (386)
T 3sjl_D 79 --------------------FLPNPVVADDGSFIAHASTVFSR---------IARGERTDYVEVFDPVTLLPTADIELPD 129 (386)
T ss_dssp --------------------SSCEEEECTTSSCEEEEEEEEEE---------TTEEEEEEEEEEECTTTCCEEEEEEETT
T ss_pred --------------------CCCcEEECCCCCEEEEEcccccc---------cccCCCCCEEEEEECCCCeEEEEEECCC
Confidence 12359999999999886421000 0000123457777777654322222211
Q ss_pred -C-----CCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-ccc-------cc
Q 003878 296 -P-----EHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-DGF-------DA 361 (789)
Q Consensus 296 -~-----~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-~~~-------~~ 361 (789)
. ..+. .+.+||||++|++..... .+.|.++|+++++ ....+. .+. ..
T Consensus 130 g~r~~~g~~P~---~~a~spDGk~lyVan~~~---~~~VsVID~~t~~-------------vv~tI~v~g~~~~~P~g~~ 190 (386)
T 3sjl_D 130 APRFLVGTYPW---MTSLTPDGKTLLFYQFSP---APAVGVVDLEGKA-------------FKRMLDVPDCYHIFPTAPD 190 (386)
T ss_dssp CCCCCBSCCGG---GEEECTTSSEEEEEECSS---SCEEEEEETTTTE-------------EEEEEECCSEEEEEEEETT
T ss_pred ccccccCCCCc---eEEEcCCCCEEEEEEcCC---CCeEEEEECCCCc-------------EEEEEECCCcceeecCCCc
Confidence 0 1122 468999999998764321 3679999998852 011110 000 01
Q ss_pred eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEe-cCCEEEEEEEeCCeEEEEEEECCCC
Q 003878 362 QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAV-NLNQMIVSYLSDVKYVLQIRDLKNG 440 (789)
Q Consensus 362 ~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~-~~~~lv~~~~~~g~~~L~~~dl~tG 440 (789)
.+...++||+.+++..... .++.... + .++............+. +++++++... ++ +++++|+.++
T Consensus 191 ~~~~~~~DG~~~~v~~~~~---g~v~~~~--~-----~~~~~~~~~~~~~~~~~~~dG~~~~vs~-~g--~V~v~d~~~~ 257 (386)
T 3sjl_D 191 TFFMHCRDGSLAKVAFGTE---GTPEITH--T-----EVFHPEDEFLINHPAYSQKAGRLVWPTY-TG--KIHQIDLSSG 257 (386)
T ss_dssp EEEEEETTSCEEEEECCSS---SCCEEEE--C-----CCCSCTTSCBCSCCEEETTTTEEEEEBT-TS--EEEEEECTTS
T ss_pred eeEEECCCCCEEEEECCCC---CeEEEee--c-----ceeccccccccccceeEcCCCcEEEEeC-CC--EEEEEECCCC
Confidence 1123455555444432211 1121110 0 11111111111123443 4466665333 44 7999999754
Q ss_pred ce--eeecc-c------C---CeeEEEeecccCCcEEEEEEcC-----CCC-CcEEEEEECCCCC
Q 003878 441 SL--LHQLP-I------E---IGSVNAISARREDSVVFISFTS-----FLI-PGIVYQCNLKTET 487 (789)
Q Consensus 441 ~~--~~~l~-~------~---~~~v~~~s~s~d~~~l~~~~ss-----~~~-P~~ly~~dl~tg~ 487 (789)
.. ...+. + + .+....+..+++++++|+.... ... ..+++.+|+++++
T Consensus 258 ~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k 322 (386)
T 3sjl_D 258 DAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 322 (386)
T ss_dssp SCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred cceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence 32 12222 0 0 1111124557899999987641 122 3689999999987
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00056 Score=75.50 Aligned_cols=190 Identities=13% Similarity=0.114 Sum_probs=111.5
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
..++| |++.|+....+ ..|.+|++.++.. ...+.. +...+..+.++ +..++..
T Consensus 177 ~~l~~--~~~~l~sg~~d-------------------g~i~vwd~~~~~~--~~~~~~--h~~~v~~l~~~--~~~l~s~ 229 (435)
T 1p22_A 177 LCLQY--DERVIITGSSD-------------------STVRVWDVNTGEM--LNTLIH--HCEAVLHLRFN--NGMMVTC 229 (435)
T ss_dssp EEEEC--CSSEEEEEETT-------------------SCEEEEESSSCCE--EEEECC--CCSCEEEEECC--TTEEEEE
T ss_pred EEEEE--CCCEEEEEcCC-------------------CeEEEEECCCCcE--EEEEcC--CCCcEEEEEEc--CCEEEEe
Confidence 45555 78877765432 2488888876532 222332 33345566775 4566554
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCe
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDW 397 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~ 397 (789)
+. ...|.++|+.++. .........+.......+..+++.++..+. ++.|..+|+.+++..
T Consensus 230 s~-----dg~i~vwd~~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~~ 289 (435)
T 1p22_A 230 SK-----DRSIAVWDMASPT-----------DITLRRVLVGHRAAVNVVDFDDKYIVSASG----DRTIKVWNTSTCEFV 289 (435)
T ss_dssp ET-----TSCEEEEECSSSS-----------CCEEEEEECCCSSCEEEEEEETTEEEEEET----TSEEEEEETTTCCEE
T ss_pred eC-----CCcEEEEeCCCCC-----------CceeeeEecCCCCcEEEEEeCCCEEEEEeC----CCeEEEEECCcCcEE
Confidence 43 2448889988742 111111222222222223447887775543 467999999887633
Q ss_pred EEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcE
Q 003878 398 FEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGI 477 (789)
Q Consensus 398 ~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ 477 (789)
..+..+. ..+..+.+. +.++++...++ .|.+||+.+|+....+......+..+.+ ++..++... .-+.
T Consensus 290 ~~~~~~~--~~v~~~~~~--~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~----~dg~ 357 (435)
T 1p22_A 290 RTLNGHK--RGIACLQYR--DRLVVSGSSDN--TIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA----YDGK 357 (435)
T ss_dssp EEEECCS--SCEEEEEEE--TTEEEEEETTS--CEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE----TTSC
T ss_pred EEEcCCC--CcEEEEEeC--CCEEEEEeCCC--eEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe----CCCc
Confidence 3443333 456677774 35666666676 6899999988876677655666766666 566554332 2367
Q ss_pred EEEEECCCC
Q 003878 478 VYQCNLKTE 486 (789)
Q Consensus 478 ly~~dl~tg 486 (789)
+..||+.++
T Consensus 358 i~vwd~~~~ 366 (435)
T 1p22_A 358 IKVWDLVAA 366 (435)
T ss_dssp EEEEEHHHH
T ss_pred EEEEECCCC
Confidence 888887654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00064 Score=72.08 Aligned_cols=202 Identities=9% Similarity=0.054 Sum_probs=109.8
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEec-------CCCCeeEEEEEEecC
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD-------PEHPKYIFSGHVTED 310 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~-------~~~~~~~~~~~~SpD 310 (789)
.+++++|||+ ||++.. ...+|++++...... .+..+.. ...-....+++++|+
T Consensus 94 ~gia~d~~g~-l~v~d~------------------~~~~v~~~~~~g~~~-~~~~~~~~~~~g~~~~~~~~P~~ia~~~~ 153 (329)
T 3fvz_A 94 HGLSIDTDGN-YWVTDV------------------ALHQVFKLDPHSKEG-PLLILGRSMQPGSDQNHFCQPTDVAVEPS 153 (329)
T ss_dssp EEEEECTTSC-EEEEET------------------TTTEEEEECTTCSSC-CSEEESBTTBCCCSTTCCSSEEEEEECTT
T ss_pred eEEEECCCCC-EEEEEC------------------CCCEEEEEeCCCCeE-EEEEecccCCCCCCccccCCCcEEEEeCC
Confidence 5789999998 666532 234688877654311 1222221 111123457899994
Q ss_pred CcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-c---------cc-ceeEEEecCCCEEEEEECC
Q 003878 311 GQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-G---------FD-AQYEVIANDDTVFTFLTNK 379 (789)
Q Consensus 311 G~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~---------~~-~~~~~~s~dG~~l~~~tn~ 379 (789)
+..|++.... . ...|++++.++. ....+.. + +. ..-..+++++..+|+...
T Consensus 154 ~g~lyv~d~~-~--~~~I~~~~~~g~--------------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~- 215 (329)
T 3fvz_A 154 TGAVFVSDGY-C--NSRIVQFSPSGK--------------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR- 215 (329)
T ss_dssp TCCEEEEECS-S--CCEEEEECTTSC--------------EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET-
T ss_pred CCeEEEEeCC-C--CCeEEEEcCCCC--------------EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC-
Confidence 4445444321 1 466888885431 0111100 0 00 112347888777887543
Q ss_pred CCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeC-----CeEEEEEEECCCCceeeecc---cCCe
Q 003878 380 DAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSD-----VKYVLQIRDLKNGSLLHQLP---IEIG 451 (789)
Q Consensus 380 ~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~-----g~~~L~~~dl~tG~~~~~l~---~~~~ 451 (789)
.+.+|.+++.++++....+..........++.+.+ +.++...... ....++++++.+|+.+..+. ....
T Consensus 216 --~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~ 292 (329)
T 3fvz_A 216 --ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD 292 (329)
T ss_dssp --TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS
T ss_pred --CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC
Confidence 35789999998665233332222223455677777 5555442211 12378999988888765553 1233
Q ss_pred eEEEeecccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 452 SVNAISARREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 452 ~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
...++++++++ .++++-. ...+|+++++.
T Consensus 293 ~p~~ia~~~dG-~lyvad~---~~~~I~~~~~~ 321 (329)
T 3fvz_A 293 MPHDIVASEDG-TVYIGDA---HTNTVWKFTLT 321 (329)
T ss_dssp SEEEEEECTTS-EEEEEES---SSCCEEEEEEE
T ss_pred CeeEEEECCCC-CEEEEEC---CCCEEEEEeCC
Confidence 45677888888 5665432 23477777764
|
| >2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39 | Back alignment and structure |
|---|
Probab=98.15 E-value=7.6e-06 Score=74.48 Aligned_cols=96 Identities=11% Similarity=-0.004 Sum_probs=63.7
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCC
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 595 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~ 595 (789)
.+| .++..... ++.|.||++| +... .|... +. ++|.|+.+|+||.|..... .
T Consensus 9 ~~g-~~~~~~~~--------g~~~~vv~~H-~~~~----~~~~~----l~-~~~~v~~~d~~G~G~s~~~--------~- 60 (131)
T 2dst_A 9 LYG-LNLVFDRV--------GKGPPVLLVA-EEAS----RWPEA----LP-EGYAFYLLDLPGYGRTEGP--------R- 60 (131)
T ss_dssp ETT-EEEEEEEE--------CCSSEEEEES-SSGG----GCCSC----CC-TTSEEEEECCTTSTTCCCC--------C-
T ss_pred ECC-EEEEEEEc--------CCCCeEEEEc-CCHH----HHHHH----Hh-CCcEEEEECCCCCCCCCCC--------C-
Confidence 477 77754322 2347899999 2211 22221 55 6799999999997753211 0
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc
Q 003878 596 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDL 642 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~ 642 (789)
.. ++++.+.+..+++. .+.+++.++|+|+||.++..++.++|.+
T Consensus 61 ~~-~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~l 104 (131)
T 2dst_A 61 MA-PEELAHFVAGFAVM--MNLGAPWVLLRGLGLALGPHLEALGLRA 104 (131)
T ss_dssp CC-HHHHHHHHHHHHHH--TTCCSCEEEECGGGGGGHHHHHHTTCCE
T ss_pred CC-HHHHHHHHHHHHHH--cCCCccEEEEEChHHHHHHHHHhcCCcE
Confidence 11 66666666666554 2446899999999999999999999963
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00016 Score=79.75 Aligned_cols=209 Identities=9% Similarity=0.063 Sum_probs=124.6
Q ss_pred cceEEEEe-CCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCC---CC-CCcEEEEecCCCCeeEEEEEEecCC
Q 003878 237 FSSIAWTH-DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT---KQ-SEDILCWKDPEHPKYIFSGHVTEDG 311 (789)
Q Consensus 237 ~~~~~wsp-Dg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~---~~-~~~~~~~~~~~~~~~~~~~~~SpDG 311 (789)
...++|+| ||+.|+....+ ..|.+|++.+ .. .+..+.+. +...+..+.|+||+
T Consensus 66 V~~~~~s~~~~~~l~s~s~d-------------------g~v~vwd~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~ 123 (437)
T 3gre_A 66 ITSSAVSPGETPYLITGSDQ-------------------GVIKIWNLKEIIVGEVYSSSLTYD---CSSTVTQITMIPNF 123 (437)
T ss_dssp EEEEEEECSSSCEEEEEETT-------------------SEEEEEEHHHHHTTCCCSCSEEEE---CSSCEEEEEECTTS
T ss_pred eEEEEECCCCCCEEEEecCC-------------------ceEEEeECcccccCcccceeeecc---CCCCEEEEEEeCCC
Confidence 68899999 99988766432 3588888755 22 11123333 23346789999999
Q ss_pred cEEEEEEEcCCCCceEEEEEECC---CCCCCcccccccCCCCccEeeec----ccccee---EEEecCCCEEEEEECCCC
Q 003878 312 QYLVMCIEENCDPVNKVYYCDLS---ALPEGLEGFKKRDGLLPFVKLID----GFDAQY---EVIANDDTVFTFLTNKDA 381 (789)
Q Consensus 312 ~~l~~~~~~~~~~~~~i~~~d~~---~g~~~~~~~~~~~~~~~~~~l~~----~~~~~~---~~~s~dG~~l~~~tn~~~ 381 (789)
++|+..+.+ ..|.++|+. ++.. . .... ......+.- ...... ..+++++..|+..+.
T Consensus 124 ~~l~s~s~d-----g~i~vwd~~~~~~~~~-~-~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 190 (437)
T 3gre_A 124 DAFAVSSKD-----GQIIVLKVNHYQQESE-V-KFLN---CECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN--- 190 (437)
T ss_dssp SEEEEEETT-----SEEEEEEEEEEEETTE-E-EEEE---EEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET---
T ss_pred CEEEEEeCC-----CEEEEEEeccccCCce-e-eccc---cceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC---
Confidence 998876533 447777764 2210 0 0000 000011100 000011 124567776665443
Q ss_pred CCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEee---
Q 003878 382 PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAIS--- 457 (789)
Q Consensus 382 ~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s--- 457 (789)
+..|..+|+.+++....+..+.....+..+.+++++.++++...++ .|.+||+.+++....+..+ ...+..+.
T Consensus 191 -d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 267 (437)
T 3gre_A 191 -LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRG--IIDIWDIRFNVLIRSWSFGDHAPITHVEVCQ 267 (437)
T ss_dssp -TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTS--CEEEEETTTTEEEEEEBCTTCEEEEEEEECT
T ss_pred -CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCC--eEEEEEcCCccEEEEEecCCCCceEEEEecc
Confidence 3689999998876333443311235688899998777888888887 6899999888776666533 55676773
Q ss_pred -cccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 458 -ARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 458 -~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+++++..++ +. ..-+.+..||+.+++
T Consensus 268 ~~s~~~~~l~-s~---~~dg~i~iwd~~~~~ 294 (437)
T 3gre_A 268 FYGKNSVIVV-GG---SSKTFLTIWNFVKGH 294 (437)
T ss_dssp TTCTTEEEEE-EE---STTEEEEEEETTTTE
T ss_pred ccCCCccEEE-EE---cCCCcEEEEEcCCCc
Confidence 445554433 32 234689999998885
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00033 Score=74.63 Aligned_cols=158 Identities=8% Similarity=0.026 Sum_probs=91.7
Q ss_pred cceEEEEe--CCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEE
Q 003878 237 FSSIAWTH--DSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYL 314 (789)
Q Consensus 237 ~~~~~wsp--Dg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l 314 (789)
...++|+| +++.|+....+ ..|.+|++.++.. ..+.... +...+..++|+|||++|
T Consensus 128 v~~~~~~~~~~~~~l~s~s~d-------------------g~i~~wd~~~~~~--~~~~~~~-~~~~i~~~~~~pdg~~l 185 (343)
T 3lrv_A 128 IIYMYGHNEVNTEYFIWADNR-------------------GTIGFQSYEDDSQ--YIVHSAK-SDVEYSSGVLHKDSLLL 185 (343)
T ss_dssp EEEEECCC---CCEEEEEETT-------------------CCEEEEESSSSCE--EEEECCC-SSCCCCEEEECTTSCEE
T ss_pred EEEEEcCCCCCCCEEEEEeCC-------------------CcEEEEECCCCcE--EEEEecC-CCCceEEEEECCCCCEE
Confidence 46889999 99988765433 2488899876533 2333222 22235578999999998
Q ss_pred EEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-ccccee-EEEecCCCEEEEEECCCCCCceEEEEECC
Q 003878 315 VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLK 392 (789)
Q Consensus 315 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~ 392 (789)
+.... ...|.++|+.++. .....+.. ...... ..|+|+|..|+..+ . + .|..+|+.
T Consensus 186 asg~~-----dg~i~iwd~~~~~------------~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~---~-~v~iwd~~ 243 (343)
T 3lrv_A 186 ALYSP-----DGILDVYNLSSPD------------QASSRFPVDEEAKIKEVKFADNGYWMVVEC-D---Q-TVVCFDLR 243 (343)
T ss_dssp EEECT-----TSCEEEEESSCTT------------SCCEECCCCTTSCEEEEEECTTSSEEEEEE-S---S-BEEEEETT
T ss_pred EEEcC-----CCEEEEEECCCCC------------CCccEEeccCCCCEEEEEEeCCCCEEEEEe-C---C-eEEEEEcC
Confidence 86543 3458999998752 11012221 112222 34899999887655 2 2 79999998
Q ss_pred CCCCeEEeccCC-CCceee--eEEEecCCEEEEEEEe-CCeEEEEEEECCCC
Q 003878 393 EPNDWFEVIPEA-ERDVLE--SATAVNLNQMIVSYLS-DVKYVLQIRDLKNG 440 (789)
Q Consensus 393 ~~~~~~~l~~~~-~~~~i~--~v~~~~~~~lv~~~~~-~g~~~L~~~dl~tG 440 (789)
+++....+.+.. ....+. .+++++++.++++... ++ .+.+|+.+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~--~i~v~~~~~~ 293 (343)
T 3lrv_A 244 KDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESN--SLTIYKFDKK 293 (343)
T ss_dssp SSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTT--EEEEEEECTT
T ss_pred CCCcceeecccccccccccceEEEECCCCCEEEEecCCCC--cEEEEEEccc
Confidence 765222221110 011222 4888886666666665 55 5677776533
|
| >1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A {Bacillus subtilis} SCOP: c.69.1.22 | Back alignment and structure |
|---|
Probab=98.14 E-value=7e-06 Score=82.39 Aligned_cols=89 Identities=9% Similarity=0.010 Sum_probs=60.6
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
.|.|+++||..+.. ..|.. +...+. . +.|+.++++|.+. ..+|+.+.++.+.. .
T Consensus 17 ~~~l~~~hg~~~~~--~~~~~-~~~~l~-~-~~v~~~d~~g~~~----------------~~~~~~~~i~~~~~-----~ 70 (230)
T 1jmk_C 17 EQIIFAFPPVLGYG--LMYQN-LSSRLP-S-YKLCAFDFIEEED----------------RLDRYADLIQKLQP-----E 70 (230)
T ss_dssp SEEEEEECCTTCCG--GGGHH-HHHHCT-T-EEEEEECCCCSTT----------------HHHHHHHHHHHHCC-----S
T ss_pred CCCEEEECCCCCch--HHHHH-HHHhcC-C-CeEEEecCCCHHH----------------HHHHHHHHHHHhCC-----C
Confidence 47899999976543 23332 345565 5 9999999997432 23455555555421 2
Q ss_pred CcEEEEeeChHHHHHHHHHHhCC---CceeEEEecCCc
Q 003878 618 RKLCIEGGSNGGLLVGACINQRP---DLFGCALAHVGV 652 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~p---d~f~a~v~~~p~ 652 (789)
.++.++|+|+||.++..++.+.| +..+++|+..+.
T Consensus 71 ~~~~l~G~S~Gg~ia~~~a~~~~~~~~~v~~lvl~~~~ 108 (230)
T 1jmk_C 71 GPLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSY 108 (230)
T ss_dssp SCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCC
T ss_pred CCeEEEEECHhHHHHHHHHHHHHHcCCCccEEEEECCC
Confidence 47999999999999998887653 567777766554
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00021 Score=77.16 Aligned_cols=73 Identities=5% Similarity=-0.011 Sum_probs=51.1
Q ss_pred EEEecC-CEEEEEEEeC-C-----eEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 412 ATAVNL-NQMIVSYLSD-V-----KYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 412 v~~~~~-~~lv~~~~~~-g-----~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
+.++++ +++|+....+ + ...+.++|+++++.+..|+.+. ...++.+++|++.++++... ...++..+|+.
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~--~~~~VsVID~~ 345 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSA--GTEVLDIYDAA 345 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEET--TTTEEEEEESS
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccC--CCCeEEEEECC
Confidence 556764 5677655523 3 3345699999988877777653 34467889999988876541 24799999999
Q ss_pred CCC
Q 003878 485 TET 487 (789)
Q Consensus 485 tg~ 487 (789)
+++
T Consensus 346 t~k 348 (368)
T 1mda_H 346 SDQ 348 (368)
T ss_dssp SCE
T ss_pred CCc
Confidence 884
|
| >2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase, biodegradation, catal; HET: PG4; 1.20A {Paucimonas lemoignei} PDB: 2vtv_A* 2x76_A | Back alignment and structure |
|---|
Probab=98.14 E-value=3.5e-06 Score=90.15 Aligned_cols=109 Identities=8% Similarity=-0.041 Sum_probs=75.5
Q ss_pred ccEEEEEcCCCCcc--------CCCCC----CHHHHHHHHcCCeE---EEEEeecCCCCCChhHHhcccccCCcchHHHH
Q 003878 538 HPCLLYGYGGFNIS--------VTPSF----SVSRTILMRHLGAV---FCIANIRGGGEYGEEWHKGGALAKKQNCFDDF 602 (789)
Q Consensus 538 ~P~ll~~hGg~~~~--------~~~~~----~~~~~~~l~~~G~~---v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~ 602 (789)
.+.||++||..+.. ....| .. +...|.++||. |+.+|+||.|..... . .........+++
T Consensus 40 ~~pVVlvHG~~~~~~~~~~~~~~~~~w~~~~~~-l~~~L~~~Gy~~~~V~~~D~~g~G~S~~~---~-~~~~~~~~~~~l 114 (342)
T 2x5x_A 40 KTPVIFIHGNGDNAISFDMPPGNVSGYGTPARS-VYAELKARGYNDCEIFGVTYLSSSEQGSA---Q-YNYHSSTKYAII 114 (342)
T ss_dssp SCCEEEECCTTCCGGGGGCCCCCCTTTCCCSSC-HHHHHHHTTCCTTSEEEECCSCHHHHTCG---G-GCCBCHHHHHHH
T ss_pred CCeEEEECCcCCCcccccccccccccccccHHH-HHHHHHhCCCCCCeEEEEeCCCCCccCCc---c-ccCCHHHHHHHH
Confidence 34488899977643 22344 44 34455558998 999999986531100 0 011123446788
Q ss_pred HHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhC--CCceeEEEecCCcc
Q 003878 603 ISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQR--PDLFGCALAHVGVM 653 (789)
Q Consensus 603 ~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~--pd~f~a~v~~~p~~ 653 (789)
.+.++.+++.- ..+++.++|||+||+++..++.++ |++++++|+..|..
T Consensus 115 ~~~I~~l~~~~--g~~~v~LVGHSmGG~iA~~~a~~~~~p~~V~~lVlla~p~ 165 (342)
T 2x5x_A 115 KTFIDKVKAYT--GKSQVDIVAHSMGVSMSLATLQYYNNWTSVRKFINLAGGI 165 (342)
T ss_dssp HHHHHHHHHHH--TCSCEEEEEETHHHHHHHHHHHHHTCGGGEEEEEEESCCT
T ss_pred HHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHcCchhhhcEEEEECCCc
Confidence 88888887652 336899999999999999999988 89999999887654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=9e-05 Score=80.13 Aligned_cols=80 Identities=11% Similarity=-0.012 Sum_probs=51.7
Q ss_pred EEecCCCEEEEEECCC-C----CCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCE-EEEEEE-eCCeEEEEEEEC
Q 003878 365 VIANDDTVFTFLTNKD-A----PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ-MIVSYL-SDVKYVLQIRDL 437 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~-~----~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~-lv~~~~-~~g~~~L~~~dl 437 (789)
.+++||+++|+..+.. . ....+.++|+++.+.... ++-. ..-.++.++++++ +++... .+ ..|.++|+
T Consensus 270 ~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~-i~vg--~~p~gi~~s~Dg~~l~va~~~~~--~~VsVID~ 344 (368)
T 1mda_H 270 AKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP-ISNG--HDSDAIIAAQDGASDNYANSAGT--EVLDIYDA 344 (368)
T ss_dssp EEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEEC-CEEE--EEECEEEECCSSSCEEEEEETTT--TEEEEEES
T ss_pred EEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEE-EECC--CCcceEEECCCCCEEEEEccCCC--CeEEEEEC
Confidence 4899999999865411 1 013455999988762222 2222 2346788888654 666555 23 38999999
Q ss_pred CCCceeeecccC
Q 003878 438 KNGSLLHQLPIE 449 (789)
Q Consensus 438 ~tG~~~~~l~~~ 449 (789)
++++.++.|..+
T Consensus 345 ~t~kvv~~I~vg 356 (368)
T 1mda_H 345 ASDQDQSSVELD 356 (368)
T ss_dssp SSCEEEEECCCC
T ss_pred CCCcEEEEEECC
Confidence 999887777654
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=98.09 E-value=5.8e-06 Score=87.90 Aligned_cols=209 Identities=11% Similarity=-0.027 Sum_probs=107.0
Q ss_pred EEEEEcC--CCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 540 CLLYGYG--GFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 540 ~ll~~hG--g~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
.|+++|| +.+. ...|.. +...|. .++.|+.++.||.|...... ......+++++.+.+..++..- ...
T Consensus 91 ~l~~~hg~g~~~~--~~~~~~-l~~~L~-~~~~v~~~d~~G~g~~~~~~-----~~~~~~~~~~~a~~~~~~i~~~-~~~ 160 (319)
T 2hfk_A 91 VLVGCTGTAANGG--PHEFLR-LSTSFQ-EERDFLAVPLPGYGTGTGTG-----TALLPADLDTALDAQARAILRA-AGD 160 (319)
T ss_dssp EEEEECCCCTTCS--TTTTHH-HHHTTT-TTCCEEEECCTTCCBC---C-----BCCEESSHHHHHHHHHHHHHHH-HTT
T ss_pred cEEEeCCCCCCCc--HHHHHH-HHHhcC-CCCceEEecCCCCCCCcccc-----cCCCCCCHHHHHHHHHHHHHHh-cCC
Confidence 7889998 2322 334443 445666 79999999999976420000 0111234554443332222220 122
Q ss_pred CcEEEEeeChHHHHHHHHHHhCC----CceeEEEecCCccccccc-c-cc--cCCccchhhcCCCCcHHHHHHHHhcCc-
Q 003878 618 RKLCIEGGSNGGLLVGACINQRP----DLFGCALAHVGVMDMLRY-H-KF--TIGHAWVSDFGCSEEEEEFYWLIKYSP- 688 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~p----d~f~a~v~~~p~~d~~~~-~-~~--~~~~~~~~e~g~p~~~~~~~~l~~~sP- 688 (789)
.++.++|+|+||.++..++.+.| +..+++|+..+....... . .+ .....+....-.+.....+..+..|.-
T Consensus 161 ~p~~l~G~S~GG~vA~~~A~~l~~~~g~~v~~lvl~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (319)
T 2hfk_A 161 APVVLLGHAGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARLLAMGRYARF 240 (319)
T ss_dssp SCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTSCHHHHHTHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred CCEEEEEECHHHHHHHHHHHHHHHhhCCCceEEEEeCCCCCCchhHHHHHHHHhhHHHHHhhccccchHHHHHHHHHHHH
Confidence 57999999999999999988763 457777766543211000 0 00 000000010111211222222222100
Q ss_pred --ccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHH-HHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCch
Q 003878 689 --LHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLH-SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPT 765 (789)
Q Consensus 689 --~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~-~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~ 765 (789)
....... ..|+|+++| .|..+++.. ...+ +.. ....++++.++ +||...-..
T Consensus 241 ~~~~~~~~i----------~~Pvl~i~g-~D~~~~~~~~~~~~----~~~---------~~~~~~~~~v~-g~H~~~~~e 295 (319)
T 2hfk_A 241 LAGPRPGRS----------SAPVLLVRA-SEPLGDWQEERGDW----RAH---------WDLPHTVADVP-GDHFTMMRD 295 (319)
T ss_dssp HHSCCCCCC----------CSCEEEEEE-SSCSSCCCGGGCCC----SCC---------CSSCSEEEEES-SCTTHHHHT
T ss_pred HHhCCCCCc----------CCCEEEEEc-CCCCCCccccccch----hhc---------CCCCCEEEEeC-CCcHHHHHH
Confidence 0112232 679999999 999888764 2222 211 02345777777 699742211
Q ss_pred hhHHHHHHHHHHHHHHHhC
Q 003878 766 QKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 766 ~~~~~~~~~~~~fl~~~l~ 784 (789)
. .....+.+.+||.+...
T Consensus 296 ~-~~~~~~~i~~~L~~~~~ 313 (319)
T 2hfk_A 296 H-APAVAEAVLSWLDAIEG 313 (319)
T ss_dssp C-HHHHHHHHHHHHHHHHC
T ss_pred h-HHHHHHHHHHHHHhcCC
Confidence 2 23556677888876543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0014 Score=67.06 Aligned_cols=164 Identities=9% Similarity=-0.014 Sum_probs=99.1
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.++++.|+++.||++.. ...+|++.++..... ..+.... ...-.+++++|++.+|++.
T Consensus 82 ~~ia~d~~~~~lyv~d~------------------~~~~I~~~~~~g~~~--~~~~~~~--~~~P~~i~vd~~~g~lyv~ 139 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDS------------------QLDRIEVAKMDGTQR--RVLFDTG--LVNPRGIVTDPVRGNLYWT 139 (267)
T ss_dssp EEEEEETTTTEEEEEET------------------TTTEEEEEETTSCSC--EEEECSS--CSSEEEEEEETTTTEEEEE
T ss_pred cEEEEEecCCeEEEEEC------------------CCCEEEEEEcCCCCE--EEEEECC--CCCccEEEEeeCCCEEEEE
Confidence 67889999989988732 234688888764322 2232221 1123478899998888876
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-cccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-DGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
.... ....|+++++++.. ...+. .+.. ..-..++++++.||+.... ..+|.++++++..
T Consensus 140 ~~~~--~~~~I~~~~~dg~~--------------~~~~~~~~~~~P~gia~d~~~~~lyv~d~~---~~~I~~~~~~g~~ 200 (267)
T 1npe_A 140 DWNR--DNPKIETSHMDGTN--------------RRILAQDNLGLPNGLTFDAFSSQLCWVDAG---THRAECLNPAQPG 200 (267)
T ss_dssp ECCS--SSCEEEEEETTSCC--------------CEEEECTTCSCEEEEEEETTTTEEEEEETT---TTEEEEEETTEEE
T ss_pred ECCC--CCcEEEEEecCCCC--------------cEEEEECCCCCCcEEEEcCCCCEEEEEECC---CCEEEEEecCCCc
Confidence 5321 13578888876521 11111 1111 1123478889999876543 4689999997653
Q ss_pred CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI 448 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~ 448 (789)
.+.+++.. ..-.++++.. +.+++....++ +|++++.++|+..+.+..
T Consensus 201 -~~~~~~~~--~~P~gi~~d~-~~lyva~~~~~--~v~~~d~~~g~~~~~i~~ 247 (267)
T 1npe_A 201 -RRKVLEGL--QYPFAVTSYG-KNLYYTDWKTN--SVIAMDLAISKEMDTFHP 247 (267)
T ss_dssp -EEEEEECC--CSEEEEEEET-TEEEEEETTTT--EEEEEETTTTEEEEEECC
T ss_pred -eEEEecCC--CCceEEEEeC-CEEEEEECCCC--eEEEEeCCCCCceEEEcc
Confidence 33343322 2234666664 78887554443 799999988887666643
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00049 Score=72.03 Aligned_cols=213 Identities=14% Similarity=0.073 Sum_probs=121.5
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEec--CCcEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE--DGQYL 314 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~Sp--DG~~l 314 (789)
...++|+|||+.|+....+ ..|++|++.+.......+.....+...+..+.|+| ||++|
T Consensus 14 v~~~~~~~~~~~l~~~~~d-------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l 74 (351)
T 3f3f_A 14 VHDVVYDFYGRHVATCSSD-------------------QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRII 74 (351)
T ss_dssp EEEEEECSSSSEEEEEETT-------------------SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEE
T ss_pred eeEEEEcCCCCEEEEeeCC-------------------CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEE
Confidence 5789999999988866432 35888888765433222222222344567899999 69988
Q ss_pred EEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecC--CCEEEEEECCCCCCceEEEEEC
Q 003878 315 VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIAND--DTVFTFLTNKDAPKYKIIRVDL 391 (789)
Q Consensus 315 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~d--G~~l~~~tn~~~~~~~L~~~dl 391 (789)
+....+ ..|.++|+.++...... ....+...+........ ..|+|+ ++.|+..+. ++.|..+|+
T Consensus 75 ~s~~~d-----g~v~vwd~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~v~iwd~ 141 (351)
T 3f3f_A 75 ASASYD-----KTVKLWEEDPDQEECSG----RRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN----DGILRLYDA 141 (351)
T ss_dssp EEEETT-----SCEEEEEECTTSCTTSS----CSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET----TCEEEEEEC
T ss_pred EEEcCC-----CeEEEEecCCCcccccc----cCcceeeeecccCCceeEEEEcCCCCCcEEEEecC----CCcEEEecC
Confidence 876543 34788888764211000 00011111211112122 348888 887776543 467999998
Q ss_pred CCCCC---eE-----E---eccCCCCceeeeEEEecC---CEEEEEEEeCCeEEEEEEECCCCce--eeecccCCeeEEE
Q 003878 392 KEPND---WF-----E---VIPEAERDVLESATAVNL---NQMIVSYLSDVKYVLQIRDLKNGSL--LHQLPIEIGSVNA 455 (789)
Q Consensus 392 ~~~~~---~~-----~---l~~~~~~~~i~~v~~~~~---~~lv~~~~~~g~~~L~~~dl~tG~~--~~~l~~~~~~v~~ 455 (789)
.+++. +. . +.+......+..+.+.++ +.+++....++ .+..++..+++. ...+..+...+..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~i~~ 219 (351)
T 3f3f_A 142 LEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ--AIIYQRGKDGKLHVAAKLPGHKSLIRS 219 (351)
T ss_dssp SSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE--EEEEEECTTSCEEEEEECCCCCSCEEE
T ss_pred CChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCC--cEEEEccCCCceeeeeecCCCCcceeE
Confidence 77641 11 0 011122244567777764 56666666665 445555555553 2334434667888
Q ss_pred eecccCCc---EEEEEEcCCCCCcEEEEEECCCC
Q 003878 456 ISARREDS---VVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 456 ~s~s~d~~---~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
+.+++++. .++++.+ .-+.+..||+.++
T Consensus 220 ~~~~p~~~~~~~~l~s~~---~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 220 ISWAPSIGRWYQLIATGC---KDGRIRIFKITEK 250 (351)
T ss_dssp EEECCCSSCSSEEEEEEE---TTSCEEEEEEEEC
T ss_pred EEECCCCCCcceEEEEEc---CCCeEEEEeCCCC
Confidence 89999873 3444443 2457888887665
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0008 Score=71.35 Aligned_cols=201 Identities=7% Similarity=-0.057 Sum_probs=113.0
Q ss_pred cceEEEEeC---CcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcE
Q 003878 237 FSSIAWTHD---SKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQY 313 (789)
Q Consensus 237 ~~~~~wspD---g~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~ 313 (789)
...++|+|| |+.|+....+ ..|++|++.+........+... ...+..+.|+|||++
T Consensus 42 v~~~~~~~~~~~g~~l~~~~~d-------------------g~i~iw~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~ 100 (368)
T 3mmy_A 42 IGCLSFSPPTLPGNFLIAGSWA-------------------NDVRCWEVQDSGQTIPKAQQMH--TGPVLDVCWSDDGSK 100 (368)
T ss_dssp EEEEEECCTTSSSEEEEEEETT-------------------SEEEEEEECTTSCEEEEEEEEC--SSCEEEEEECTTSSE
T ss_pred eEEEEEcCCCCCceEEEEECCC-------------------CcEEEEEcCCCCceeEEEeccc--cCCEEEEEECcCCCE
Confidence 578999999 5777765432 3588888876332222333332 334678999999999
Q ss_pred EEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEE--ecCCCEEEEEECCCCCCceEEEEE
Q 003878 314 LVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVI--ANDDTVFTFLTNKDAPKYKIIRVD 390 (789)
Q Consensus 314 l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~--s~dG~~l~~~tn~~~~~~~L~~~d 390 (789)
|+.... ...|.++|+.++. ............ ..| +++++.|+..+. ++.|..+|
T Consensus 101 l~s~~~-----dg~v~iwd~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~vwd 157 (368)
T 3mmy_A 101 VFTASC-----DKTAKMWDLSSNQ--------------AIQIAQHDAPVKTIHWIKAPNYSCVMTGSW----DKTLKFWD 157 (368)
T ss_dssp EEEEET-----TSEEEEEETTTTE--------------EEEEEECSSCEEEEEEEECSSCEEEEEEET----TSEEEEEC
T ss_pred EEEEcC-----CCcEEEEEcCCCC--------------ceeeccccCceEEEEEEeCCCCCEEEEccC----CCcEEEEE
Confidence 986653 3468899998742 112222111122 236 777776665433 35688888
Q ss_pred CCCCCCeEEeccCC---------------------------------------CCceeeeEEEecCC----EEEEEEEeC
Q 003878 391 LKEPNDWFEVIPEA---------------------------------------ERDVLESATAVNLN----QMIVSYLSD 427 (789)
Q Consensus 391 l~~~~~~~~l~~~~---------------------------------------~~~~i~~v~~~~~~----~lv~~~~~~ 427 (789)
+.+++....+..+. .......+.+..+. ..++....+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 237 (368)
T 3mmy_A 158 TRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIE 237 (368)
T ss_dssp SSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETT
T ss_pred CCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCC
Confidence 76654222221111 00111122222111 125556666
Q ss_pred CeEEEEEEECCCCc---eeeecccCCe------------eEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 428 VKYVLQIRDLKNGS---LLHQLPIEIG------------SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 428 g~~~L~~~dl~tG~---~~~~l~~~~~------------~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+ .|.+|++..+. ....+..... .+..+.++++++.++... .-+.++.||+.+++
T Consensus 238 g--~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~----~dg~i~iwd~~~~~ 306 (368)
T 3mmy_A 238 G--RVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG----SDGRFSFWDKDART 306 (368)
T ss_dssp S--EEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE----TTSCEEEEETTTTE
T ss_pred C--cEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc----cCCeEEEEECCCCc
Confidence 5 67888887552 2222222222 477888999998665443 23679999998874
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0011 Score=71.22 Aligned_cols=205 Identities=9% Similarity=-0.019 Sum_probs=115.2
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccccee
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFF 213 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 213 (789)
+..+.++++++.++.+... ..+|++||+.+++.+. .+... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~----d~~v~iWd~~~~~~~~-~~~~~----------------------~------------ 101 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGV----KEVVHIWDDVKKQDVS-RIKVD----------------------A------------ 101 (355)
T ss_dssp CCEEEECTTSSEEEEECSS----TTEEEEEETTTTEEEE-EEECS----------------------S------------
T ss_pred eEEEEEcCCCCEEEEEECC----ccEEEEEECCCCcEEE-EEECC----------------------C------------
Confidence 4557789999998865322 2389999999997653 11111 0
Q ss_pred eEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCC-CCCcEEE
Q 003878 214 FFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTK-QSEDILC 292 (789)
Q Consensus 214 ~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~-~~~~~~~ 292 (789)
....++|+++. ++... ...+++|++.+. .....
T Consensus 102 ----------------------~v~~v~~~~~~--~~~~~--------------------~~~i~i~d~~~~~~~~~~-- 135 (355)
T 3vu4_A 102 ----------------------PVKDLFLSREF--IVVSY--------------------GDVISVFKFGNPWKRITD-- 135 (355)
T ss_dssp ----------------------CEEEEEECSSE--EEEEE--------------------TTEEEEEESSTTCCBSSC--
T ss_pred ----------------------ceEEEEEcCCE--EEEEE--------------------cCEEEEEECCCCceeeEE--
Confidence 24567787653 44332 124888888765 22111
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccc---cCCCCc-cEeeecccccee-EEEe
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKK---RDGLLP-FVKLIDGFDAQY-EVIA 367 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~---~~~~~~-~~~l~~~~~~~~-~~~s 367 (789)
+.. + .....+++ +++++.+... ...|.++|+.++..- ....+ .....+ ...+........ ..|+
T Consensus 136 ~~~---~--~~~~~~s~--~~la~~sg~~---~g~v~iwd~~~~~~~-~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s 204 (355)
T 3vu4_A 136 DIR---F--GGVCEFSN--GLLVYSNEFN---LGQIHITKLQSSGSA-TTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN 204 (355)
T ss_dssp CEE---E--EEEEEEET--TEEEEEESSC---TTCEEEEECCC-------------------CCEEECCCSSCEEEEEEC
T ss_pred ecc---C--CceEEEEc--cEEEEeCCCc---CcEEEEEECCCCCcc-ccccccccccccCcccEEEEccCCceEEEEEC
Confidence 111 1 12345677 6777653222 345888998864200 00000 000001 222222222222 3489
Q ss_pred cCCCEEEEEECCCCCCce-EEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCC
Q 003878 368 NDDTVFTFLTNKDAPKYK-IIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNG 440 (789)
Q Consensus 368 ~dG~~l~~~tn~~~~~~~-L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG 440 (789)
|||+.|+..+. +.. |..+|+.+++....+........+..+++++++.++++...++ .|.+||+..+
T Consensus 205 ~~g~~l~s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~--~v~iw~~~~~ 272 (355)
T 3vu4_A 205 RKSDMVATCSQ----DGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKW--TLHVFEIFND 272 (355)
T ss_dssp TTSSEEEEEET----TCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTC--EEEEEESSCC
T ss_pred CCCCEEEEEeC----CCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCC--EEEEEEccCC
Confidence 99998775433 355 8899998876344443221235688999999778888888886 7888998754
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0012 Score=72.51 Aligned_cols=163 Identities=12% Similarity=0.033 Sum_probs=90.2
Q ss_pred EEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEec-CCCCeeEEEEEEecCCcEEEEEE
Q 003878 240 IAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD-PEHPKYIFSGHVTEDGQYLVMCI 318 (789)
Q Consensus 240 ~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~-~~~~~~~~~~~~SpDG~~l~~~~ 318 (789)
++|+|||+.||..... ....|++++..+.... ..+-.. +.......+++++|++..|++ +
T Consensus 176 ia~~~~g~~l~~~d~~-----------------~~~~I~~~d~~~~~~~-~~~g~~~~~~~~~p~~iav~p~~g~lyv-~ 236 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWE-----------------GTHTVYVYMKASGWAP-TRIGQLGSTFSGKIGAVALDETEEWLYF-V 236 (409)
T ss_dssp CEECTTSSEEEEEBSS-----------------TTCEEEEEEGGGTTCE-EEEEECCTTSCSCCCBCEECTTSSEEEE-E
T ss_pred eeEecCCCcEEEEecC-----------------CCceEEEEEcCCCcee-EEeeeccchhcCCcEEEEEeCCCCeEEE-E
Confidence 9999999988776321 1226888777544321 111010 101112235788997777777 3
Q ss_pred EcCCCCceEEEEEECCCCCCCcccccccCCCCccEe--eec--cccce-eEEEecCCCEEEEEECCCCCCceEEEEECCC
Q 003878 319 EENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK--LID--GFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKE 393 (789)
Q Consensus 319 ~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~--l~~--~~~~~-~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~ 393 (789)
. . ...|+.++.+++... .+.. ... +.... ...++|++..||+... .+.+|++++.++
T Consensus 237 d-~---~~~I~~~d~~~~~~~-----------~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~---~~~~I~~~~~~g 298 (409)
T 3hrp_A 237 D-S---NKNFGRFNVKTQEVT-----------LIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ---NLSSVYKITPDG 298 (409)
T ss_dssp C-T---TCEEEEEETTTCCEE-----------EEEECCCCSCCCCSSCCEEEEETTTTEEEEEET---TTTEEEEECTTC
T ss_pred E-C---CCcEEEEECCCCCEE-----------EEecccccCCCCCCccccEEEeCCCCEEEEEeC---CCCEEEEEecCC
Confidence 2 2 357999998864200 0000 000 11101 3458887788887643 356899998765
Q ss_pred CCCeEEeccCC-------------CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce
Q 003878 394 PNDWFEVIPEA-------------ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 394 ~~~~~~l~~~~-------------~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
. ...+.... .-....++++++++.++++-. .+..+|+++++.+|+.
T Consensus 299 ~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~-~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 299 E--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG-FKGYCLRKLDILDGYV 357 (409)
T ss_dssp C--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET-TTTCEEEEEETTTTEE
T ss_pred C--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC-CCCCEEEEEECCCCEE
Confidence 3 23333221 012245788888667776543 0234899999766764
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.04 E-value=8.7e-05 Score=88.60 Aligned_cols=201 Identities=11% Similarity=-0.010 Sum_probs=123.7
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecC--CcEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTED--GQYL 314 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpD--G~~l 314 (789)
...++|+|||+.|+....+ ..|.+|++.++..+....+. .+...+..+.|+|+ |++|
T Consensus 12 V~~l~~s~dg~~latg~~d-------------------g~I~vwd~~~~~~~~~~~l~--~h~~~V~~l~~s~~~~~~~l 70 (753)
T 3jro_A 12 IHDAVLDYYGKRLATCSSD-------------------KTIKIFEVEGETHKLIDTLT--GHEGPVWRVDWAHPKFGTIL 70 (753)
T ss_dssp EEEECCCSSSCCEEEEETT-------------------TEEEEEEEETTEEEEEEEEC--CCSSCEEEEEECCTTSCSEE
T ss_pred eEEEEECCCCCeEEEEECC-------------------CcEEEEecCCCCCccceecc--CCcCceEEEEecCCCCCCEE
Confidence 5788999999988866432 35788887643322222333 33444678999998 9988
Q ss_pred EEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce-eEEEecC--CCEEEEEECCCCCCceEEEEEC
Q 003878 315 VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEVIAND--DTVFTFLTNKDAPKYKIIRVDL 391 (789)
Q Consensus 315 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~d--G~~l~~~tn~~~~~~~L~~~dl 391 (789)
+..+.+ ..|+++|+.++. .............. ...|+|+ |+.++..+. ++.|..+|+
T Consensus 71 ~s~s~D-----g~I~vwd~~~~~-----------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~----dg~I~vwdl 130 (753)
T 3jro_A 71 ASCSYD-----GKVLIWKEENGR-----------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS----DGKVSVVEF 130 (753)
T ss_dssp EEEETT-----SCEEEEEEETTE-----------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEET----TSEEEEEEC
T ss_pred EEEeCC-----CeEEEEECCCCc-----------ccccccccCCCCCeEEEEECCCCCCCEEEEEeC----CCcEEEEEe
Confidence 876643 347888887641 00111121111112 2348898 887776543 467999998
Q ss_pred CCCCC--eEEeccCCCCceeeeEEEec-------------CCEEEEEEEeCCeEEEEEEECCCCce----eeecccCCee
Q 003878 392 KEPND--WFEVIPEAERDVLESATAVN-------------LNQMIVSYLSDVKYVLQIRDLKNGSL----LHQLPIEIGS 452 (789)
Q Consensus 392 ~~~~~--~~~l~~~~~~~~i~~v~~~~-------------~~~lv~~~~~~g~~~L~~~dl~tG~~----~~~l~~~~~~ 452 (789)
.++.. ...+..+ ...+..+.+.+ ++.++++...++ .|++||+.++.. ...+..+.+.
T Consensus 131 ~~~~~~~~~~~~~~--~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~~~~~h~~~ 206 (753)
T 3jro_A 131 KENGTTSPIIIDAH--AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN--LVKIWKYNSDAQTYVLESTLEGHSDW 206 (753)
T ss_dssp CSSSCCCCEEEECC--SSCEEEEEECCCC---------CGGGCCEEEEETTS--CEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred ecCCCcceeEeecC--CCceEEEEecCcccccccccccCCCCCEEEEEECCC--eEEEEeccCCcccceeeeeecCCCCc
Confidence 77631 2222222 35577888877 356777777777 588888876532 2333444667
Q ss_pred EEEeecccC---CcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 453 VNAISARRE---DSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 453 v~~~s~s~d---~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
+..+.++|+ ++.++ +.+ .-+.+..||+.++
T Consensus 207 V~~l~~sp~~~~~~~l~-s~s---~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 207 VRDVAWSPTVLLRSYLA-SVS---QDRTCIIWTQDNE 239 (753)
T ss_dssp EEEEEECCCCSSSEEEE-EEE---SSSCEEEEEESSS
T ss_pred EEEEEeccCCCCCCEEE-EEe---cCCEEEEecCCCC
Confidence 888899998 55444 433 2357888888775
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=0.01 Score=60.44 Aligned_cols=200 Identities=8% Similarity=-0.019 Sum_probs=117.8
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+++|+|+++.||++.. ...+|++.++.+... ..+.... -....+++++++++.|++
T Consensus 38 ~~gi~~d~~~~~ly~~d~------------------~~~~I~~~~~~g~~~--~~~~~~~--~~~p~~ia~d~~~~~lyv 95 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDI------------------SEPSIGRASLHGGEP--TTIIRQD--LGSPEGIALDHLGRTIFW 95 (267)
T ss_dssp EEEEEEETTTTEEEEEET------------------TTTEEEEEESSSCCC--EEEECTT--CCCEEEEEEETTTTEEEE
T ss_pred EEEEEEecCCCEEEEEEC------------------CCCEEEEEecCCCCc--EEEEECC--CCCccEEEEEecCCeEEE
Confidence 368999999999998742 234688888865432 2232221 112347889999998887
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-cc-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 394 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~ 394 (789)
.... ...|+++++++.. ...+.. +. ...-..++++++.||+.... ....+|+++++++.
T Consensus 96 ~d~~----~~~I~~~~~~g~~--------------~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~-~~~~~I~~~~~dg~ 156 (267)
T 1npe_A 96 TDSQ----LDRIEVAKMDGTQ--------------RRVLFDTGLVNPRGIVTDPVRGNLYWTDWN-RDNPKIETSHMDGT 156 (267)
T ss_dssp EETT----TTEEEEEETTSCS--------------CEEEECSSCSSEEEEEEETTTTEEEEEECC-SSSCEEEEEETTSC
T ss_pred EECC----CCEEEEEEcCCCC--------------EEEEEECCCCCccEEEEeeCCCEEEEEECC-CCCcEEEEEecCCC
Confidence 6432 4679999987521 111211 11 11223478888888876532 23578999998765
Q ss_pred CCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCC
Q 003878 395 NDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFL 473 (789)
Q Consensus 395 ~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~ 473 (789)
. .+.+.... ...-.+++++++ +.||+..... .+|++++++++.. +.+........+++. +++.++++-.
T Consensus 157 ~-~~~~~~~~-~~~P~gia~d~~~~~lyv~d~~~--~~I~~~~~~g~~~-~~~~~~~~~P~gi~~--d~~~lyva~~--- 226 (267)
T 1npe_A 157 N-RRILAQDN-LGLPNGLTFDAFSSQLCWVDAGT--HRAECLNPAQPGR-RKVLEGLQYPFAVTS--YGKNLYYTDW--- 226 (267)
T ss_dssp C-CEEEECTT-CSCEEEEEEETTTTEEEEEETTT--TEEEEEETTEEEE-EEEEECCCSEEEEEE--ETTEEEEEET---
T ss_pred C-cEEEEECC-CCCCcEEEEcCCCCEEEEEECCC--CEEEEEecCCCce-EEEecCCCCceEEEE--eCCEEEEEEC---
Confidence 4 33443222 234567888873 5777765444 4899999974332 222111111223443 4667776432
Q ss_pred CCcEEEEEECCCCC
Q 003878 474 IPGIVYQCNLKTET 487 (789)
Q Consensus 474 ~P~~ly~~dl~tg~ 487 (789)
....++++|..+++
T Consensus 227 ~~~~v~~~d~~~g~ 240 (267)
T 1npe_A 227 KTNSVIAMDLAISK 240 (267)
T ss_dssp TTTEEEEEETTTTE
T ss_pred CCCeEEEEeCCCCC
Confidence 34689999998884
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0023 Score=66.70 Aligned_cols=194 Identities=11% Similarity=0.018 Sum_probs=115.3
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.+++|+|+++.|+++.. ...+|++++..+... ..+..+. ....+.+++||+ |++.
T Consensus 16 Egp~w~~~~~~l~~~d~------------------~~~~i~~~d~~~~~~---~~~~~~~---~~~~i~~~~dG~-l~v~ 70 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDI------------------PAKKVCRWDSFTKQV---QRVTMDA---PVSSVALRQSGG-YVAT 70 (297)
T ss_dssp EEEEEETTTTEEEEEET------------------TTTEEEEEETTTCCE---EEEECSS---CEEEEEEBTTSS-EEEE
T ss_pred cCCeEECCCCEEEEEEC------------------CCCEEEEEECCCCcE---EEEeCCC---ceEEEEECCCCC-EEEE
Confidence 68999999999998732 235689998876432 3344332 345788999999 4444
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec---c--cc-ceeEEEecCCCEEEEEECCC--------CCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID---G--FD-AQYEVIANDDTVFTFLTNKD--------APK 383 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~---~--~~-~~~~~~s~dG~~l~~~tn~~--------~~~ 383 (789)
. ...|+++|.+++. +..+.. + .. .....++++|+ ||+.+... ...
T Consensus 71 ~------~~~l~~~d~~~g~--------------~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~ 129 (297)
T 3g4e_A 71 I------GTKFCALNWKEQS--------------AVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQ 129 (297)
T ss_dssp E------TTEEEEEETTTTE--------------EEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTC
T ss_pred E------CCeEEEEECCCCc--------------EEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCC
Confidence 3 2458999987642 111111 0 00 11133788887 66655321 245
Q ss_pred ceEEEEECCCCCCeEEeccCCCCceeeeEEEecCC-EEEEEEEeCCeEEEEEEEC--CCCcee--eec-ccC--CeeEEE
Q 003878 384 YKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDL--KNGSLL--HQL-PIE--IGSVNA 455 (789)
Q Consensus 384 ~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl--~tG~~~--~~l-~~~--~~~v~~ 455 (789)
..|++++.++ + ...+.... ....++++++++ .+++....++ +|+++++ ++|... +.+ .++ .+...+
T Consensus 130 ~~l~~~d~~g-~-~~~~~~~~--~~pngi~~spdg~~lyv~~~~~~--~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g 203 (297)
T 3g4e_A 130 GALYSLFPDH-H-VKKYFDQV--DISNGLDWSLDHKIFYYIDSLSY--SVDAFDYDLQTGQISNRRSVYKLEKEEQIPDG 203 (297)
T ss_dssp EEEEEECTTS-C-EEEEEEEE--SBEEEEEECTTSCEEEEEEGGGT--EEEEEEECTTTCCEEEEEEEEECCGGGCEEEE
T ss_pred cEEEEEECCC-C-EEEEeecc--ccccceEEcCCCCEEEEecCCCC--cEEEEeccCCCCcccCcEEEEECCCCCCCCCe
Confidence 6899998753 3 33333322 234578888754 4666554443 7888876 456431 111 122 345567
Q ss_pred eecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 456 ISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 456 ~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+..++++. ++++.. ....+++||.++|+
T Consensus 204 ~~~d~~G~-lwva~~---~~~~v~~~d~~tG~ 231 (297)
T 3g4e_A 204 MCIDAEGK-LWVACY---NGGRVIRLDPVTGK 231 (297)
T ss_dssp EEEBTTSC-EEEEEE---TTTEEEEECTTTCC
T ss_pred eEECCCCC-EEEEEc---CCCEEEEEcCCCce
Confidence 77888885 665542 23579999998885
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0011 Score=68.74 Aligned_cols=192 Identities=11% Similarity=0.087 Sum_probs=112.2
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.+++|+|||+.|+++.. ....|++++..+. ...+..+. ....++.++|||+.++ .
T Consensus 31 eg~~~d~~g~~l~~~~~------------------~~~~i~~~~~~~~----~~~~~~~~--~~~~~l~~~~dg~l~v-~ 85 (296)
T 3e5z_A 31 EGPVYVPARSAVIFSDV------------------RQNRTWAWSDDGQ----LSPEMHPS--HHQNGHCLNKQGHLIA-C 85 (296)
T ss_dssp EEEEEEGGGTEEEEEEG------------------GGTEEEEEETTSC----EEEEESSC--SSEEEEEECTTCCEEE-E
T ss_pred cCCeEeCCCCEEEEEeC------------------CCCEEEEEECCCC----eEEEECCC--CCcceeeECCCCcEEE-E
Confidence 68999999998888743 2346888888764 23343332 2345789999998543 3
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec---cc---cceeEEEecCCCEEEEEEC-------------
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID---GF---DAQYEVIANDDTVFTFLTN------------- 378 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~---~~---~~~~~~~s~dG~~l~~~tn------------- 378 (789)
.. . ...|++++.+++. ...+.. +. ......++++|+ +|+...
T Consensus 86 ~~-~---~~~i~~~d~~~g~--------------~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~ 146 (296)
T 3e5z_A 86 SH-G---LRRLERQREPGGE--------------WESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGG 146 (296)
T ss_dssp ET-T---TTEEEEECSTTCC--------------EEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCC
T ss_pred ec-C---CCeEEEEcCCCCc--------------EEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccc
Confidence 21 1 3568999986642 111111 00 011234788886 555321
Q ss_pred -CCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC-CCce---eeecccCCeeE
Q 003878 379 -KDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK-NGSL---LHQLPIEIGSV 453 (789)
Q Consensus 379 -~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~-tG~~---~~~l~~~~~~v 453 (789)
.+.....|++++.+ +. .+.+.... ....++++++++.+++....+ ..|++++++ +|+. .+.+....+..
T Consensus 147 ~~~~~~~~l~~~~~~-g~-~~~~~~~~--~~~~gi~~s~dg~~lv~~~~~--~~i~~~~~~~~g~~~~~~~~~~~~~~~p 220 (296)
T 3e5z_A 147 EMELPGRWVFRLAPD-GT-LSAPIRDR--VKPNGLAFLPSGNLLVSDTGD--NATHRYCLNARGETEYQGVHFTVEPGKT 220 (296)
T ss_dssp CCCSSSCEEEEECTT-SC-EEEEECCC--SSEEEEEECTTSCEEEEETTT--TEEEEEEECSSSCEEEEEEEECCSSSCC
T ss_pred cccCCCcEEEEECCC-CC-EEEeecCC--CCCccEEECCCCCEEEEeCCC--CeEEEEEECCCCcCcCCCeEeeCCCCCC
Confidence 11124689999877 44 44443332 345678888866655443333 478999886 4543 22222122233
Q ss_pred EEeecccCCcEEEEEEcCCCCCcEEEEEECCC
Q 003878 454 NAISARREDSVVFISFTSFLIPGIVYQCNLKT 485 (789)
Q Consensus 454 ~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~t 485 (789)
.++.++++++ ++++. ...+++||...
T Consensus 221 ~~i~~d~~G~-l~v~~-----~~~v~~~~~~g 246 (296)
T 3e5z_A 221 DGLRVDAGGL-IWASA-----GDGVHVLTPDG 246 (296)
T ss_dssp CSEEEBTTSC-EEEEE-----TTEEEEECTTS
T ss_pred CeEEECCCCC-EEEEc-----CCeEEEECCCC
Confidence 3566778886 56554 46899999863
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00074 Score=69.17 Aligned_cols=199 Identities=13% Similarity=0.108 Sum_probs=122.9
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.+++|+||| .||.+... .....|...++.++.....+ ..+..+ + ...++.+|+.|+..
T Consensus 24 ~Gl~~~~dg-~Lyvstg~----------------~~~s~v~~iD~~tg~v~~~i--~l~~~~-f--geGi~~~g~~lyv~ 81 (266)
T 2iwa_A 24 QGLVYAEND-TLFESTGL----------------YGRSSVRQVALQTGKVENIH--KMDDSY-F--GEGLTLLNEKLYQV 81 (266)
T ss_dssp EEEEECSTT-EEEEEECS----------------TTTCEEEEEETTTCCEEEEE--ECCTTC-C--EEEEEEETTEEEEE
T ss_pred ccEEEeCCC-eEEEECCC----------------CCCCEEEEEECCCCCEEEEE--ecCCCc-c--eEEEEEeCCEEEEE
Confidence 689999985 67766421 12456888998876533222 222222 2 23455568888776
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCe
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDW 397 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~ 397 (789)
... .+.++++|.++.. ....+..+....+. +++||+++|+ +| + ..+|..+|.++.+..
T Consensus 82 t~~----~~~v~viD~~t~~-------------v~~~i~~g~~~g~g-lt~Dg~~l~v-s~-g--s~~l~viD~~t~~v~ 139 (266)
T 2iwa_A 82 VWL----KNIGFIYDRRTLS-------------NIKNFTHQMKDGWG-LATDGKILYG-SD-G--TSILYEIDPHTFKLI 139 (266)
T ss_dssp ETT----CSEEEEEETTTTE-------------EEEEEECCSSSCCE-EEECSSSEEE-EC-S--SSEEEEECTTTCCEE
T ss_pred Eec----CCEEEEEECCCCc-------------EEEEEECCCCCeEE-EEECCCEEEE-EC-C--CCeEEEEECCCCcEE
Confidence 532 4679999998742 11222112011233 6789998885 55 2 368999999887633
Q ss_pred EEeccC-C--CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCC-------------eeEEEeecccC
Q 003878 398 FEVIPE-A--ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEI-------------GSVNAISARRE 461 (789)
Q Consensus 398 ~~l~~~-~--~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~-------------~~v~~~s~s~d 461 (789)
..+.-. . +-..+..+.+.+ +.+++.... ...|.++|+++|+.+..|.++. ....+++++++
T Consensus 140 ~~I~Vg~~~~p~~~~nele~~d-g~lyvn~~~--~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~ 216 (266)
T 2iwa_A 140 KKHNVKYNGHRVIRLNELEYIN-GEVWANIWQ--TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQE 216 (266)
T ss_dssp EEEECEETTEECCCEEEEEEET-TEEEEEETT--SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETT
T ss_pred EEEEECCCCcccccceeEEEEC-CEEEEecCC--CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCC
Confidence 333211 1 112355677774 777755433 3489999999999877776531 24467889999
Q ss_pred CcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 462 DSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 462 ~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
+++++++-..+ +.+|.+++.+.
T Consensus 217 ~~~lfVTgk~~---~~v~~i~l~~~ 238 (266)
T 2iwa_A 217 NKRIFVTGKLW---PKLFEIKLHLV 238 (266)
T ss_dssp TTEEEEEETTC---SEEEEEEEEEC
T ss_pred CCEEEEECCCC---CeEEEEEEecc
Confidence 99999876544 78888887543
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=97.94 E-value=3.2e-05 Score=82.52 Aligned_cols=102 Identities=15% Similarity=0.033 Sum_probs=68.0
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHH-HHHHHHcCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISA-SEYLISAGY 614 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~-~~~L~~~~~ 614 (789)
+..|.|+++||..+.. ..|.. +...|. .++.|+.++.+|.+. ... ...+++++.+. ++.+.+..
T Consensus 99 g~~~~l~~lhg~~~~~--~~~~~-l~~~L~-~~~~v~~~d~~g~~~---~~~-------~~~~~~~~a~~~~~~i~~~~- 163 (329)
T 3tej_A 99 GNGPTLFCFHPASGFA--WQFSV-LSRYLD-PQWSIIGIQSPRPNG---PMQ-------TAANLDEVCEAHLATLLEQQ- 163 (329)
T ss_dssp CSSCEEEEECCTTSCC--GGGGG-GGGTSC-TTCEEEEECCCTTTS---HHH-------HCSSHHHHHHHHHHHHHHHC-
T ss_pred CCCCcEEEEeCCcccc--hHHHH-HHHhcC-CCCeEEEeeCCCCCC---CCC-------CCCCHHHHHHHHHHHHHHhC-
Confidence 3457899999977653 23332 233444 789999999998643 111 12345555443 33333321
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHh---CCCceeEEEecCCcc
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQ---RPDLFGCALAHVGVM 653 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~---~pd~f~a~v~~~p~~ 653 (789)
...++.++|||+||.++..++.+ +|+....+|+..+..
T Consensus 164 -~~~~~~l~G~S~Gg~ia~~~a~~L~~~~~~v~~lvl~d~~~ 204 (329)
T 3tej_A 164 -PHGPYYLLGYSLGGTLAQGIAARLRARGEQVAFLGLLDTWP 204 (329)
T ss_dssp -SSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCC
T ss_pred -CCCCEEEEEEccCHHHHHHHHHHHHhcCCcccEEEEeCCCC
Confidence 22589999999999999999998 999999888776544
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00066 Score=74.89 Aligned_cols=172 Identities=12% Similarity=0.033 Sum_probs=94.4
Q ss_pred EEEEEECCCCCCCcE-EEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEe
Q 003878 276 EFYYHFLGTKQSEDI-LCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK 354 (789)
Q Consensus 276 ~i~~~~lg~~~~~~~-~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 354 (789)
.|.++++.+...... ..... +...+..+.+ +|++|+.... ...|.++|+.++. ....
T Consensus 234 ~i~vwd~~~~~~~~~~~~~~~--~~~~v~~~~~--~~~~l~s~~~-----dg~i~vwd~~~~~-------------~~~~ 291 (435)
T 1p22_A 234 SIAVWDMASPTDITLRRVLVG--HRAAVNVVDF--DDKYIVSASG-----DRTIKVWNTSTCE-------------FVRT 291 (435)
T ss_dssp CEEEEECSSSSCCEEEEEECC--CSSCEEEEEE--ETTEEEEEET-----TSEEEEEETTTCC-------------EEEE
T ss_pred cEEEEeCCCCCCceeeeEecC--CCCcEEEEEe--CCCEEEEEeC-----CCeEEEEECCcCc-------------EEEE
Confidence 488888876543211 12222 2333445555 8888876653 3558899998742 1222
Q ss_pred eeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEE
Q 003878 355 LIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 355 l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~ 434 (789)
+..... ....+..+++.++..+. ++.|..+|+.+++....+..+. ..+..+.+. +..+++...++ .|.+
T Consensus 292 ~~~~~~-~v~~~~~~~~~l~~g~~----dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~~--~~~l~sg~~dg--~i~v 360 (435)
T 1p22_A 292 LNGHKR-GIACLQYRDRLVVSGSS----DNTIRLWDIECGACLRVLEGHE--ELVRCIRFD--NKRIVSGAYDG--KIKV 360 (435)
T ss_dssp EECCSS-CEEEEEEETTEEEEEET----TSCEEEEETTTCCEEEEECCCS--SCEEEEECC--SSEEEEEETTS--CEEE
T ss_pred EcCCCC-cEEEEEeCCCEEEEEeC----CCeEEEEECCCCCEEEEEeCCc--CcEEEEEec--CCEEEEEeCCC--cEEE
Confidence 222111 22223346776665443 3579999998876334443333 456777773 55667777776 6888
Q ss_pred EECCCCc---------eeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 435 RDLKNGS---------LLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 435 ~dl~tG~---------~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
||+.+++ ....+....+.+..+++ ++..++ +. ..-+.+..||+.++
T Consensus 361 wd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~-s~---s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 361 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIV-SS---SHDDTILIWDFLND 415 (435)
T ss_dssp EEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEE-EC---CSSSEEEEEC----
T ss_pred EECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEE-EE---eCCCEEEEEECCCC
Confidence 9986544 22333333444544554 555443 22 34568899988766
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0023 Score=64.98 Aligned_cols=194 Identities=10% Similarity=0.067 Sum_probs=105.8
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..++++++||+ |+++.. ...|++++..+... ..+... ......++.+++||+ |++
T Consensus 69 p~~i~~~~~g~-l~v~~~-------------------~~~i~~~d~~~~~~---~~~~~~-~~~~p~~i~~~~~g~-l~v 123 (270)
T 1rwi_B 69 PQGLAVDGAGT-VYVTDF-------------------NNRVVTLAAGSNNQ---TVLPFD-GLNYPEGLAVDTQGA-VYV 123 (270)
T ss_dssp CCCEEECTTCC-EEEEET-------------------TTEEEEECTTCSCC---EECCCC-SCSSEEEEEECTTCC-EEE
T ss_pred cceeEECCCCC-EEEEcC-------------------CCEEEEEeCCCceE---eeeecC-CcCCCcceEECCCCC-EEE
Confidence 36788999987 666532 23577777654321 111111 112345788999997 444
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
.... ...|++++..+.. ......... ......++++|+ +|+.... +..|++++.++..
T Consensus 124 ~~~~----~~~i~~~~~~~~~-------------~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~---~~~i~~~~~~~~~ 182 (270)
T 1rwi_B 124 ADRG----NNRVVKLAAGSKT-------------QTVLPFTGLNDPDGVAVDNSGN-VYVTDTD---NNRVVKLEAESNN 182 (270)
T ss_dssp EEGG----GTEEEEECTTCCS-------------CEECCCCSCCSCCCEEECTTCC-EEEEEGG---GTEEEEECTTTCC
T ss_pred EECC----CCEEEEEECCCce-------------eEeeccccCCCceeEEEeCCCC-EEEEECC---CCEEEEEecCCCc
Confidence 4321 3568888654421 010011111 111234678886 6655432 4689999987765
Q ss_pred CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEeecccCCcEEEEEEcCCCC
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFTSFLI 474 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s~d~~~l~~~~ss~~~ 474 (789)
... ..........++.+.+++.+++....++ .|++++.++... ..+... .....++.+++++. ++++-. .
T Consensus 183 -~~~-~~~~~~~~p~~i~~d~~g~l~v~~~~~~--~v~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~-l~v~~~---~ 253 (270)
T 1rwi_B 183 -QVV-LPFTDITAPWGIAVDEAGTVYVTEHNTN--QVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRT-VYVADR---G 253 (270)
T ss_dssp -EEE-CCCSSCCSEEEEEECTTCCEEEEETTTS--CEEEECTTCSCC-EECCCCSCSCEEEEEECTTCC-EEEEEG---G
T ss_pred -eEe-ecccCCCCceEEEECCCCCEEEEECCCC--cEEEEcCCCCcc-eeeccCCCCCceeEEECCCCC-EEEEEC---C
Confidence 222 2222124466788887667777654443 688999874332 333222 23455677788876 665532 2
Q ss_pred CcEEEEEECCC
Q 003878 475 PGIVYQCNLKT 485 (789)
Q Consensus 475 P~~ly~~dl~t 485 (789)
-.+|..+++..
T Consensus 254 ~~~v~~~~~~~ 264 (270)
T 1rwi_B 254 NDRVVKLTSLE 264 (270)
T ss_dssp GTEEEEECCCG
T ss_pred CCEEEEEcCCC
Confidence 45777777643
|
| >2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=6.7e-06 Score=91.03 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=76.2
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCe---EEEEEeecCCCCC----------ChhHHhccc-----------
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGA---VFCIANIRGGGEY----------GEEWHKGGA----------- 591 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~---~v~~~~~RG~g~~----------g~~~~~~~~----------- 591 (789)
++.|.||++||..+... .|.. +...|.++|| .|+.+|+||.|.. |. ....+.
T Consensus 20 ~~~ppVVLlHG~g~s~~--~w~~-la~~La~~Gy~~~~Via~DlpG~G~S~~~~~Dv~~~G~-~~~~G~n~~p~id~~~l 95 (484)
T 2zyr_A 20 EDFRPVVFVHGLAGSAG--QFES-QGMRFAANGYPAEYVKTFEYDTISWALVVETDMLFSGL-GSEFGLNISQIIDPETL 95 (484)
T ss_dssp -CCCCEEEECCTTCCGG--GGHH-HHHHHHHTTCCGGGEEEECCCHHHHHHHTTTSTTTTTG-GGHHHHHHGGGSCHHHH
T ss_pred CCCCEEEEECCCCCCHH--HHHH-HHHHHHHcCCCcceEEEEECCCCCcccccccccccccc-ccccccccccccccccc
Confidence 35678999999866543 3443 4455666899 6999999986521 10 000000
Q ss_pred --------ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC---CceeEEEecCCccc
Q 003878 592 --------LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRP---DLFGCALAHVGVMD 654 (789)
Q Consensus 592 --------~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p---d~f~a~v~~~p~~d 654 (789)
.......++++.+.++.++++- ..+++.++|||+||.++..++.++| +.++++|+..|..+
T Consensus 96 ~~v~~~~~~~~~~~~~~dla~~L~~ll~~l--g~~kV~LVGHSmGG~IAl~~A~~~Pe~~~~V~~LVlIapp~~ 167 (484)
T 2zyr_A 96 DKILSKSRERLIDETFSRLDRVIDEALAES--GADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWG 167 (484)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHHHH--CCSCEEEEEETHHHHHHHHHHHTCHHHHHTEEEEEEESCCCS
T ss_pred cccccccccCchhhhHHHHHHHHHHHHHHh--CCCCEEEEEECHHHHHHHHHHHHCccchhhhCEEEEECCccc
Confidence 0011234577777888877652 2368999999999999999999988 48999998887654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0014 Score=69.98 Aligned_cols=206 Identities=8% Similarity=0.012 Sum_probs=104.6
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCC----CCeeEEEEEEecCCc
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE----HPKYIFSGHVTEDGQ 312 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~----~~~~~~~~~~SpDG~ 312 (789)
..+++++|||+ |++.-... ......+|+++++.++.. +..+..+. ...+..++.+++++.
T Consensus 69 p~gv~~d~~g~-L~v~D~g~-------------~~~~~~~i~~~d~~tg~~--~~~~~~~~~~~~~~~~~~~v~vd~~~g 132 (343)
T 2qe8_A 69 VLGIKSDGNGI-VWMLDNGN-------------QSKSVPKLVAWDTLNNQL--SRVIYLPPPITLSNSFVNDLAVDLIHN 132 (343)
T ss_dssp EEEEEECSSSE-EEEEECHH-------------HHTSCCEEEEEETTTTEE--EEEEECCTTTSCTTCCCCEEEEETTTT
T ss_pred eeEEEEcCCCc-EEEEcCCC-------------CcCCCCeEEEEECCCCeE--EEEEECChhhcccccccceEEEecCCC
Confidence 36788999875 66552110 001135688888876532 12222221 112335788998877
Q ss_pred EEEEEEEcCCCCceEEEEEECCCCCCCcccccccC---CCCccEeeecc----------------ccceeEEEecCCCEE
Q 003878 313 YLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRD---GLLPFVKLIDG----------------FDAQYEVIANDDTVF 373 (789)
Q Consensus 313 ~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~---~~~~~~~l~~~----------------~~~~~~~~s~dG~~l 373 (789)
.+++.... ......|+++|++++.. .++.... ...+......+ ....-..++|||+.|
T Consensus 133 ~~yvtd~~-~~~~~~i~v~d~~~g~~--~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~l 209 (343)
T 2qe8_A 133 FVYISDPA-PDDKAALIRVDLQTGLA--ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWL 209 (343)
T ss_dssp EEEEEECC-SGGGCEEEEEETTTCCE--EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEE
T ss_pred EEEEEcCc-cCCCCeEEEEECCCCCE--EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEE
Confidence 77665431 11246799999876421 1110000 00000000000 001123489999999
Q ss_pred EEEECCCCCCceEEEEECC---CCC--------CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce
Q 003878 374 TFLTNKDAPKYKIIRVDLK---EPN--------DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 374 ~~~tn~~~~~~~L~~~dl~---~~~--------~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
|+.... ..+|++++.. .+. .... ..+. ....++++++++.+++....++ .|.+|+.++|+.
T Consensus 210 y~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~g~~--g~pdgia~d~~G~l~va~~~~~--~V~~~d~~~G~~ 281 (343)
T 2qe8_A 210 YLSPMH---STSMYRIKSADLSNLQLTDAELGSKIER-YSEK--PICDGISIDKDHNIYVGDLAHS--AIGVITSADRAY 281 (343)
T ss_dssp EEEESS---CSEEEEEEHHHHTCTTCCHHHHHTTCEE-EEEC--CSCSCEEECTTCCEEEEEGGGT--EEEEEETTTTEE
T ss_pred EEEeCC---CCeEEEEEHHHhcCCCCChhhhhcceEe-cccC--CCCceEEECCCCCEEEEccCCC--eEEEEECCCCCE
Confidence 987543 2489998742 111 0111 1111 1234678887677777655443 899999954764
Q ss_pred eeecccC-CeeEEEeecccCCcEEEEEEc
Q 003878 443 LHQLPIE-IGSVNAISARREDSVVFISFT 470 (789)
Q Consensus 443 ~~~l~~~-~~~v~~~s~s~d~~~l~~~~s 470 (789)
...+..+ .....++++++++. ++++.+
T Consensus 282 ~~~~~~~~~~~p~~va~~~~g~-l~v~~~ 309 (343)
T 2qe8_A 282 KLLVTDEKLSWTDSFNFGSDGY-LYFDCN 309 (343)
T ss_dssp EEEEECGGGSCEEEEEECTTSC-EEEEEC
T ss_pred EEEEECCceecCCeeEECCCCc-EEEEeC
Confidence 2222223 22345667777654 555544
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00043 Score=76.76 Aligned_cols=124 Identities=8% Similarity=0.005 Sum_probs=74.8
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCce----ecccccccccccccCccceeeeeecccccccccccccc
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIV----EADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYL 208 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (789)
.+..++|||||++||.+.. .|+...+|+|||+.++.. ....+.... .+..| .+
T Consensus 94 ~v~~l~~spdg~~lav~~~-sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~h---------------~~------ 150 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMM-SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHK-LLKDA---------------GG------ 150 (434)
T ss_dssp CEEEEEECTTSCEEEEEEE-ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEE-CCCSG---------------GG------
T ss_pred cccEEEEcCCCCEEEEEEe-ccCCCceEEEEEccccccCCcCCcceeeeee-ccCCC---------------CC------
Confidence 3788999999999987543 355578999999987510 000000000 00000 00
Q ss_pred ccceeeEEEeeeccccceeeeeeecccccceEEEEeC-CcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC
Q 003878 209 RGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHD-SKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS 287 (789)
Q Consensus 209 ~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspD-g~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~ 287 (789)
....++|+|+ ++.|+....+ ..|++|++.+..
T Consensus 151 ---------------------------~V~~v~~~p~~~~~las~s~D-------------------g~v~iwD~~~~~- 183 (434)
T 2oit_A 151 ---------------------------MVIDMKWNPTVPSMVAVCLAD-------------------GSIAVLQVTETV- 183 (434)
T ss_dssp ---------------------------SEEEEEECSSCTTEEEEEETT-------------------SCEEEEEESSSE-
T ss_pred ---------------------------ceEEEEECCCCCCEEEEEECC-------------------CeEEEEEcCCCc-
Confidence 2578999998 5656544332 348888887652
Q ss_pred CcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECC
Q 003878 288 EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLS 334 (789)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~ 334 (789)
...... .+...+..++|||||++|+....+ ..|.++|+.
T Consensus 184 -~~~~~~--~~~~~v~~v~wspdg~~lasgs~d-----g~v~iwd~~ 222 (434)
T 2oit_A 184 -KVCATL--PSTVAVTSVCWSPKGKQLAVGKQN-----GTVVQYLPT 222 (434)
T ss_dssp -EEEEEE--CGGGCEEEEEECTTSSCEEEEETT-----SCEEEECTT
T ss_pred -ceeecc--CCCCceeEEEEcCCCCEEEEEcCC-----CcEEEEccC
Confidence 111111 123346789999999999877643 348888887
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0035 Score=63.58 Aligned_cols=194 Identities=10% Similarity=0.088 Sum_probs=119.3
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.++.|+ |+ .||.+... .....|.+.++.++.....+ ..+. .. .+...+++|+.|+..
T Consensus 46 qGL~~~-~~-~LyestG~----------------~g~S~v~~vD~~Tgkv~~~~--~l~~-~~--FgeGit~~g~~ly~l 102 (262)
T 3nol_A 46 EGFFYR-NG-YFYESTGL----------------NGRSSIRKVDIESGKTLQQI--ELGK-RY--FGEGISDWKDKIVGL 102 (262)
T ss_dssp EEEEEE-TT-EEEEEEEE----------------TTEEEEEEECTTTCCEEEEE--ECCT-TC--CEEEEEEETTEEEEE
T ss_pred ceEEEE-CC-EEEEECCC----------------CCCceEEEEECCCCcEEEEE--ecCC-cc--ceeEEEEeCCEEEEE
Confidence 788898 65 77776432 12346888888876543332 2222 12 234567788888776
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCe
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDW 397 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~ 397 (789)
... .+.++++|.++.+ ....+..+. ..+. +++||+.||+ ++ + ..+|..+|.++.+..
T Consensus 103 tw~----~~~v~v~D~~t~~-------------~~~ti~~~~-eG~g-lt~dg~~L~~-Sd--G-s~~i~~iDp~T~~v~ 159 (262)
T 3nol_A 103 TWK----NGLGFVWNIRNLR-------------QVRSFNYDG-EGWG-LTHNDQYLIM-SD--G-TPVLRFLDPESLTPV 159 (262)
T ss_dssp ESS----SSEEEEEETTTCC-------------EEEEEECSS-CCCC-EEECSSCEEE-CC--S-SSEEEEECTTTCSEE
T ss_pred Eee----CCEEEEEECccCc-------------EEEEEECCC-CceE-EecCCCEEEE-EC--C-CCeEEEEcCCCCeEE
Confidence 532 4679999998842 112221111 1222 4678888775 33 2 468999999887622
Q ss_pred EEeccC---CCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC------------CeeEEEeecccCC
Q 003878 398 FEVIPE---AERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE------------IGSVNAISARRED 462 (789)
Q Consensus 398 ~~l~~~---~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~------------~~~v~~~s~s~d~ 462 (789)
..+.-. .+-..+..+.+.+ +.+++..... ..|.++|+++|+.+..|.+. .....++++++++
T Consensus 160 ~~I~V~~~g~~~~~lNELe~~~-G~lyan~w~~--~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~ 236 (262)
T 3nol_A 160 RTITVTAHGEELPELNELEWVD-GEIFANVWQT--NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEH 236 (262)
T ss_dssp EEEECEETTEECCCEEEEEEET-TEEEEEETTS--SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTT
T ss_pred EEEEeccCCccccccceeEEEC-CEEEEEEccC--CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCC
Confidence 332211 1113344577775 7877655333 48999999999987777653 1245688999999
Q ss_pred cEEEEEEcCCCCCcEEEEEEC
Q 003878 463 SVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 463 ~~l~~~~ss~~~P~~ly~~dl 483 (789)
+.++++--.| +.+|++.+
T Consensus 237 ~~lfVTGK~W---p~~~ev~~ 254 (262)
T 3nol_A 237 HRLFVTGKLW---PKVFEITL 254 (262)
T ss_dssp TEEEEEETTC---SEEEEEEE
T ss_pred CEEEEECCCC---CceEEEEE
Confidence 9999877655 66776543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.74 E-value=0.041 Score=57.93 Aligned_cols=199 Identities=11% Similarity=0.052 Sum_probs=118.4
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
..++|.+.+..||++-. ...+|++.++.+......++......+ .++++.+.++.|++.
T Consensus 38 ~~ld~d~~~~~lyw~D~------------------~~~~I~r~~~~g~~~~~~~~~~~l~~p---~glavd~~~g~ly~~ 96 (318)
T 3sov_A 38 AAVDFVFSHGLIYWSDV------------------SEEAIKRTEFNKTESVQNVVVSGLLSP---DGLACDWLGEKLYWT 96 (318)
T ss_dssp EEEEEEGGGTEEEEEET------------------TTTEEEEEETTSSSCCCEEEEECCSCC---CEEEEETTTTEEEEE
T ss_pred EEEEEEeCCCEEEEEEC------------------CCCcEEEEEccCCCceEEEEcCCCCCc---cEEEEEcCCCeEEEE
Confidence 57899998889988732 234688888876533233333332222 357888888888776
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-ccccc-eeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-DGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
-.. ...|.++++++.. ...+. ..... .-..+.|.+..||+.... .+.+|+++++++..
T Consensus 97 d~~----~~~I~~~~~dG~~--------------~~~l~~~~~~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG~~ 156 (318)
T 3sov_A 97 DSE----TNRIEVSNLDGSL--------------RKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSS 156 (318)
T ss_dssp ETT----TTEEEEEETTSCS--------------CEEEECSSCSSEEEEEEEGGGTEEEEEECS--SSCEEEEEETTSCS
T ss_pred ECC----CCEEEEEECCCCc--------------EEEEEeCCCCCccEEEEeCCCCEEEEEecC--CCCEEEEEEcCCCC
Confidence 422 4578999987631 11222 22211 112367777888876432 35789999998754
Q ss_pred CeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceeeeccc-CCeeEEEeecccCCcEEEEEEcCCC
Q 003878 396 DWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI-EIGSVNAISARREDSVVFISFTSFL 473 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~-~~~~v~~~s~s~d~~~l~~~~ss~~ 473 (789)
.+.++... -..-.++++++ ++.||++-.. ..+|++++++ |...+.+.. ......+++. +++.++++- .
T Consensus 157 -~~~~~~~~-l~~Pnglavd~~~~~lY~aD~~--~~~I~~~d~d-G~~~~~~~~~~~~~P~glav--~~~~lywtd---~ 226 (318)
T 3sov_A 157 -RFIIINSE-IYWPNGLTLDYEEQKLYWADAK--LNFIHKSNLD-GTNRQAVVKGSLPHPFALTL--FEDILYWTD---W 226 (318)
T ss_dssp -CEEEECSS-CSCEEEEEEETTTTEEEEEETT--TTEEEEEETT-SCSCEEEECSCCSCEEEEEE--ETTEEEEEE---T
T ss_pred -eEEEEECC-CCCccEEEEeccCCEEEEEECC--CCEEEEEcCC-CCceEEEecCCCCCceEEEE--eCCEEEEEe---c
Confidence 34444432 23346788885 4677776443 3489999997 543233322 1222234444 355677652 2
Q ss_pred CCcEEEEEECCCCC
Q 003878 474 IPGIVYQCNLKTET 487 (789)
Q Consensus 474 ~P~~ly~~dl~tg~ 487 (789)
....|++++..+|+
T Consensus 227 ~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 227 STHSILACNKYTGE 240 (318)
T ss_dssp TTTEEEEEETTTCC
T ss_pred CCCeEEEEECCCCC
Confidence 45689999987775
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00075 Score=71.52 Aligned_cols=123 Identities=13% Similarity=0.054 Sum_probs=58.7
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCC-CCeeEEEEEEecCCcEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE-HPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~-~~~~~~~~~~SpDG~~l~~ 316 (789)
...+|||||+.++....+... .+ ........++.+|+..++..-.++.+..++ +...+.+..+ +|..++-
T Consensus 230 ~~vafSpdG~~lvs~s~~~~~--w~-----laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lAS 300 (356)
T 2w18_A 230 CHKAYSEMGLLFIVLSHPCAK--ES-----ESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAA 300 (356)
T ss_dssp EEEEEEETTEEEEEEC-------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEE
T ss_pred EEEEECCCCCEEEEeccCCCc--ce-----eeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEE
Confidence 456899999988765432100 00 001234566888887655322222221121 1111223333 3666654
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee--EEEecCCCEEEEEECCCCCCceEEEEEC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY--EVIANDDTVFTFLTNKDAPKYKIIRVDL 391 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~s~dG~~l~~~tn~~~~~~~L~~~dl 391 (789)
.+.+ ..|.++|+.++. ....+....+... ..|+|||+.|+--+ .+..|.++|+
T Consensus 301 gS~D-----gTIkIWDl~tGk-------------~l~tL~gH~~~vvs~vafSPDG~~LaSGS----~D~TIklWd~ 355 (356)
T 2w18_A 301 ILTS-----GTIAIWDLLLGQ-------------CTALLPPVSDQHWSFVKWSGTDSHLLAGQ----KDGNIFVYHY 355 (356)
T ss_dssp EETT-----SCEEEEETTTCS-------------EEEEECCC--CCCCEEEECSSSSEEEEEC----TTSCEEEEEE
T ss_pred EcCC-----CcEEEEECCCCc-------------EEEEecCCCCCeEEEEEECCCCCEEEEEE----CCCcEEEecC
Confidence 4322 348999998853 2233332222222 35999999877432 2345666553
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00046 Score=72.67 Aligned_cols=203 Identities=9% Similarity=-0.039 Sum_probs=113.7
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEec--CCcEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE--DGQYL 314 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~Sp--DG~~l 314 (789)
...++|+|||+.|+-...+ ..|.+|++.++.......+.. +...+..++|+| +|++|
T Consensus 16 V~~v~~s~~g~~lasgs~D-------------------~~v~lwd~~~~~~~~~~~l~g--H~~~V~~v~~~~~~~~~~l 74 (316)
T 3bg1_A 16 IHDAQMDYYGTRLATCSSD-------------------RSVKIFDVRNGGQILIADLRG--HEGPVWQVAWAHPMYGNIL 74 (316)
T ss_dssp EEEEEECGGGCEEEEEETT-------------------TEEEEEEEETTEEEEEEEEEC--CSSCEEEEEECCGGGSSCE
T ss_pred EEEeeEcCCCCEEEEEeCC-------------------CeEEEEEecCCCcEEEEEEcC--CCccEEEEEeCCCCCCCEE
Confidence 5789999999998865433 358888876542211222333 334467889986 48877
Q ss_pred EEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-eeEEEecC--CCEEEEEECCCCCCceEEEEEC
Q 003878 315 VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIAND--DTVFTFLTNKDAPKYKIIRVDL 391 (789)
Q Consensus 315 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~d--G~~l~~~tn~~~~~~~L~~~dl 391 (789)
+-.+.+ ..|.++|+.++. ......+...... .-..|+|+ |..|+.. . .+..|..+++
T Consensus 75 ~s~s~D-----~~v~iWd~~~~~-----------~~~~~~~~~h~~~V~~v~~~p~~~g~~lasg-s---~D~~i~lwd~ 134 (316)
T 3bg1_A 75 ASCSYD-----RKVIIWREENGT-----------WEKSHEHAGHDSSVNSVCWAPHDYGLILACG-S---SDGAISLLTY 134 (316)
T ss_dssp EEEETT-----SCEEEECCSSSC-----------CCEEEEECCCSSCCCEEEECCTTTCSCEEEE-C---SSSCEEEEEE
T ss_pred EEEECC-----CEEEEEECCCCc-----------ceEEEEccCCCCceEEEEECCCCCCcEEEEE-c---CCCCEEEEec
Confidence 755433 348888887642 0111112111111 12348887 5555432 2 2356777787
Q ss_pred CCCCCeEEecc-CCCCceeeeEEEecC-----------------CEEEEEEEeCCeEEEEEEECCCCc---eeeecccCC
Q 003878 392 KEPNDWFEVIP-EAERDVLESATAVNL-----------------NQMIVSYLSDVKYVLQIRDLKNGS---LLHQLPIEI 450 (789)
Q Consensus 392 ~~~~~~~~l~~-~~~~~~i~~v~~~~~-----------------~~lv~~~~~~g~~~L~~~dl~tG~---~~~~l~~~~ 450 (789)
.++..+..... ......+..+.++++ ..++++...++ .|++||+.++. ....+..+.
T Consensus 135 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~--~v~lWd~~~~~~~~~~~~l~~h~ 212 (316)
T 3bg1_A 135 TGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDN--LIKLWKEEEDGQWKEEQKLEAHS 212 (316)
T ss_dssp CSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTS--BCCEEEECTTSCEEEEECCBCCS
T ss_pred CCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCC--eEEEEEeCCCCccceeeecccCC
Confidence 66532322111 111234556667663 14566666676 57788876442 223444445
Q ss_pred eeEEEeecccCC---cEEEEEEcCCCCCcEEEEEECCC
Q 003878 451 GSVNAISARRED---SVVFISFTSFLIPGIVYQCNLKT 485 (789)
Q Consensus 451 ~~v~~~s~s~d~---~~l~~~~ss~~~P~~ly~~dl~t 485 (789)
..|..+.++|++ ..++++.+ .-.++..|++.+
T Consensus 213 ~~V~~v~~sp~~~~~~~~las~s---~D~~v~iw~~~~ 247 (316)
T 3bg1_A 213 DWVRDVAWAPSIGLPTSTIASCS---QDGRVFIWTCDD 247 (316)
T ss_dssp SCEEEEECCCCSSCSCCEEEEEE---TTCEEEEEECSS
T ss_pred CceEEEEecCCCCCCCceEEEEc---CCCeEEEEEccC
Confidence 668888999886 23343433 245888888865
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0056 Score=63.16 Aligned_cols=196 Identities=9% Similarity=0.043 Sum_probs=108.3
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..++.++|||+.|+ + .. ..|+.++. ++ +.+--+..+. ...+.++.+++||+.++.
T Consensus 39 ~~~~~~~pdG~ilv-s-~~-------------------~~V~~~d~-~G--~~~W~~~~~~-~~~~~~~~~~~dG~~lv~ 93 (276)
T 3no2_A 39 CNSVAATKAGEILF-S-YS-------------------KGAKMITR-DG--RELWNIAAPA-GCEMQTARILPDGNALVA 93 (276)
T ss_dssp CCEEEECTTSCEEE-E-CB-------------------SEEEEECT-TS--CEEEEEECCT-TCEEEEEEECTTSCEEEE
T ss_pred CcCeEECCCCCEEE-e-CC-------------------CCEEEECC-CC--CEEEEEcCCC-CccccccEECCCCCEEEE
Confidence 36778899998665 3 11 23555555 32 2122222221 123557889999999876
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-c-----ccceeEEEecCCCEEEEEECCCCCCceEEEEE
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-G-----FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVD 390 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~-----~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~d 390 (789)
.... ...++.++.++ + ..+..... + .........++|+.++... .+.+|+.+|
T Consensus 94 ~~~~----~~~v~~vd~~G-k------------~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~----~~~~v~~~d 152 (276)
T 3no2_A 94 WCGH----PSTILEVNMKG-E------------VLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF----ATSEVREIA 152 (276)
T ss_dssp EEST----TEEEEEECTTS-C------------EEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET----TTTEEEEEC
T ss_pred ecCC----CCEEEEEeCCC-C------------EEEEEeccCCCCcccccccCceECCCCCEEEEec----CCCEEEEEC
Confidence 5421 35677777543 1 00111000 0 0011123577888765322 357899999
Q ss_pred CCCCC-CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc---C---CeeEEEeecccCCc
Q 003878 391 LKEPN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI---E---IGSVNAISARREDS 463 (789)
Q Consensus 391 l~~~~-~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~---~---~~~v~~~s~s~d~~ 463 (789)
.+ ++ .|+.-.+.. ..++...+++.+++....++ +|+.+|+++|+.+.++.. + ...+.++...+++.
T Consensus 153 ~~-G~~~w~~~~~~~----~~~~~~~~~g~~~v~~~~~~--~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~ 225 (276)
T 3no2_A 153 PN-GQLLNSVKLSGT----PFSSAFLDNGDCLVACGDAH--CFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGG 225 (276)
T ss_dssp TT-SCEEEEEECSSC----CCEEEECTTSCEEEECBTTS--EEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSC
T ss_pred CC-CCEEEEEECCCC----ccceeEcCCCCEEEEeCCCC--eEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCC
Confidence 88 55 343222211 22344455567776665554 799999998987555532 1 12245666678888
Q ss_pred EEEEEEcCCC------CCcEEEEEECCCC
Q 003878 464 VVFISFTSFL------IPGIVYQCNLKTE 486 (789)
Q Consensus 464 ~l~~~~ss~~------~P~~ly~~dl~tg 486 (789)
.++..+.+.. ..+.++.++. +|
T Consensus 226 i~v~~~~g~~~~~~~~~~~~~~~~~~-~g 253 (276)
T 3no2_A 226 LYICNWQGHDREAGKGKHPQLVEIDS-EG 253 (276)
T ss_dssp EEEEEECTTCTTGGGSCCCSEEEECT-TS
T ss_pred EEEEeccCccccccccCCceEEEECC-CC
Confidence 7666664432 3667888875 55
|
| >3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis, hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A {Homo sapiens} PDB: 1xkt_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00019 Score=74.53 Aligned_cols=95 Identities=9% Similarity=-0.085 Sum_probs=60.3
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
+..|.|+++||..+.. ..|.. +...| .+.|+.++.++. ....+++++.+.+..++..- .
T Consensus 22 ~~~~~l~~~hg~~~~~--~~~~~-~~~~L---~~~v~~~d~~~~--------------~~~~~~~~~a~~~~~~i~~~-~ 80 (283)
T 3tjm_A 22 SSERPLFLVHPIEGST--TVFHS-LASRL---SIPTYGLQCTRA--------------APLDSIHSLAAYYIDCIRQV-Q 80 (283)
T ss_dssp SSSCCEEEECCTTCCS--GGGHH-HHHHC---SSCEEEECCCTT--------------SCCSCHHHHHHHHHHHHTTT-C
T ss_pred CCCCeEEEECCCCCCH--HHHHH-HHHhc---CceEEEEecCCC--------------CCCCCHHHHHHHHHHHHHHh-C
Confidence 4457788999987643 23332 23333 388889998541 12335566655544444431 1
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhC---CCcee---EEEecCC
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQR---PDLFG---CALAHVG 651 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~---pd~f~---a~v~~~p 651 (789)
...++.++|||+||.++..++.+. |+... .+|+..+
T Consensus 81 ~~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~~~~lvlid~ 122 (283)
T 3tjm_A 81 PEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDG 122 (283)
T ss_dssp CSSCCEEEEETHHHHHHHHHHHHHHHHHTTSCCCCEEEEESC
T ss_pred CCCCEEEEEECHhHHHHHHHHHHHHHcCCCCCccceEEEEcC
Confidence 226899999999999999988755 77777 6665543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.025 Score=58.99 Aligned_cols=97 Identities=6% Similarity=-0.040 Sum_probs=59.2
Q ss_pred EecCCCEEEEEECCCCCCceEEEEECCC-CC--CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce
Q 003878 366 IANDDTVFTFLTNKDAPKYKIIRVDLKE-PN--DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 366 ~s~dG~~l~~~tn~~~~~~~L~~~dl~~-~~--~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
+++||+.||+... .+.+|++++++. +. ..+.+ ... ....++++.+++.+++....+ .+|.+++.+ |+.
T Consensus 174 is~dg~~lyv~d~---~~~~I~~~~~~~~g~~~~~~~~-~~~--~~P~gi~vd~dG~l~va~~~~--~~V~~~~~~-G~~ 244 (306)
T 2p4o_A 174 LKRFGNFLYVSNT---EKMLLLRIPVDSTDKPGEPEIF-VEQ--TNIDDFAFDVEGNLYGATHIY--NSVVRIAPD-RST 244 (306)
T ss_dssp EEEETTEEEEEET---TTTEEEEEEBCTTSCBCCCEEE-EES--CCCSSEEEBTTCCEEEECBTT--CCEEEECTT-CCE
T ss_pred cCcCCCEEEEEeC---CCCEEEEEEeCCCCCCCccEEE-ecc--CCCCCeEECCCCCEEEEeCCC--CeEEEECCC-CCE
Confidence 4889998887543 346899999875 32 11222 111 123567888767777655444 378899986 765
Q ss_pred ee--ecccCCeeEEEeecc---cCCcEEEEEEcC
Q 003878 443 LH--QLPIEIGSVNAISAR---REDSVVFISFTS 471 (789)
Q Consensus 443 ~~--~l~~~~~~v~~~s~s---~d~~~l~~~~ss 471 (789)
.. .+..+......+.+. ++++.|+++...
T Consensus 245 ~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 245 TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp EEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred EEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 22 344342334466666 788888887643
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=0.019 Score=58.85 Aligned_cols=153 Identities=11% Similarity=0.081 Sum_probs=86.3
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee--cccc-ceeEEEecCCCEEEEEEC
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI--DGFD-AQYEVIANDDTVFTFLTN 378 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~--~~~~-~~~~~~s~dG~~l~~~tn 378 (789)
..+++++|||+ +++... . ...|++++.++. ...... .... .....++++|+ +|+...
T Consensus 123 ~~~i~~~~~g~-l~v~~~-~---~~~i~~~~~~g~--------------~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~ 182 (286)
T 1q7f_A 123 PRGVTVDNKGR-IIVVEC-K---VMRVIIFDQNGN--------------VLHKFGCSKHLEFPNGVVVNDKQE-IFISDN 182 (286)
T ss_dssp EEEEEECTTSC-EEEEET-T---TTEEEEECTTSC--------------EEEEEECTTTCSSEEEEEECSSSE-EEEEEG
T ss_pred ceEEEEeCCCC-EEEEEC-C---CCEEEEEcCCCC--------------EEEEeCCCCccCCcEEEEECCCCC-EEEEEC
Confidence 45788999997 444332 1 356888886531 011111 1111 11234677775 665433
Q ss_pred CCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC--CeeEEEe
Q 003878 379 KDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAI 456 (789)
Q Consensus 379 ~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~--~~~v~~~ 456 (789)
.+..|.+++.++.. ...+..........++++++++.+++....++ ..|.+|+.+ |+.+..+..+ ......+
T Consensus 183 ---~~~~i~~~~~~g~~-~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~-~~i~~~~~~-g~~~~~~~~~~~~~~~~~i 256 (286)
T 1q7f_A 183 ---RAHCVKVFNYEGQY-LRQIGGEGITNYPIGVGINSNGEILIADNHNN-FNLTIFTQD-GQLISALESKVKHAQCFDV 256 (286)
T ss_dssp ---GGTEEEEEETTCCE-EEEESCTTTSCSEEEEEECTTCCEEEEECSSS-CEEEEECTT-SCEEEEEEESSCCSCEEEE
T ss_pred ---CCCEEEEEcCCCCE-EEEEccCCccCCCcEEEECCCCCEEEEeCCCC-EEEEEECCC-CCEEEEEcccCCCCcceeE
Confidence 24689999975532 33332222123456788887677777654432 278999976 6654555433 2234567
Q ss_pred ecccCCcEEEEEEcCCCCCcEEEEEECCC
Q 003878 457 SARREDSVVFISFTSFLIPGIVYQCNLKT 485 (789)
Q Consensus 457 s~s~d~~~l~~~~ss~~~P~~ly~~dl~t 485 (789)
.+++++. ++++ + . -.++..|+...
T Consensus 257 ~~~~~g~-l~vs-~-~--~~~v~v~~~~~ 280 (286)
T 1q7f_A 257 ALMDDGS-VVLA-S-K--DYRLYIYRYVQ 280 (286)
T ss_dssp EEETTTE-EEEE-E-T--TTEEEEEECSC
T ss_pred EECCCCc-EEEE-C-C--CCeEEEEEccc
Confidence 7788875 6665 3 2 36777777643
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.018 Score=62.51 Aligned_cols=162 Identities=7% Similarity=-0.053 Sum_probs=97.8
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.++++.+.++.||++-. ...+|++.++.... ...+.... -..-.+++++|++.+|+++
T Consensus 162 ~glavd~~~g~lY~~d~------------------~~~~I~~~~~dg~~--~~~l~~~~--l~~P~giavdp~~g~ly~t 219 (386)
T 3v65_B 162 GGLAVDWVHDKLYWTDS------------------GTSRIEVANLDGAH--RKVLLWQS--LEKPRAIALHPMEGTIYWT 219 (386)
T ss_dssp CCEEEETTTTEEEEEET------------------TTTEEEECBTTSCS--CEEEECSS--CSCEEEEEEETTTTEEEEE
T ss_pred cEEEEEeCCCeEEEEcC------------------CCCeEEEEeCCCCc--eEEeecCC--CCCCcEEEEEcCCCeEEEe
Confidence 56888888889988732 22467777775432 22333221 1123478899999998876
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-ccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
.... ...|+.+++++.. ...+.. +.. ..-..++++++.||+.-. ...+|.++++++..
T Consensus 220 d~~~---~~~I~r~~~dG~~--------------~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~ 279 (386)
T 3v65_B 220 DWGN---TPRIEASSMDGSG--------------RRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSH 279 (386)
T ss_dssp ECSS---SCEEEEEETTSCS--------------CEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCS
T ss_pred ccCC---CCEEEEEeCCCCC--------------cEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCe
Confidence 5321 3679999987631 122221 221 112347888899998643 45789999998754
Q ss_pred CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL 446 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l 446 (789)
.+.++... ...-.++++.. +.+|++-..+ .+|.+++..+|+..+.|
T Consensus 280 -~~~~~~~~-~~~P~giav~~-~~ly~td~~~--~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 280 -RKAVISQG-LPHPFAITVFE-DSLYWTDWHT--KSINSANKFTGKNQEII 325 (386)
T ss_dssp -CEEEECSS-CSSEEEEEEET-TEEEEEETTT--TEEEEEETTTCCSCEEE
T ss_pred -eEEEEECC-CCCceEEEEEC-CEEEEeeCCC--CeEEEEECCCCcceEEE
Confidence 34454433 23346777765 7888765433 47888886557654444
|
| >2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding, hydrolase; 2.86A {Staphylococcus hyicus} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00018 Score=79.10 Aligned_cols=115 Identities=11% Similarity=0.043 Sum_probs=64.8
Q ss_pred CCccEEEEEcCCCCcc------CCCCCCH---HHHHHHHcCCeEEEEEeecCCCCCChhHH------hcccccCCc----
Q 003878 536 GSHPCLLYGYGGFNIS------VTPSFSV---SRTILMRHLGAVFCIANIRGGGEYGEEWH------KGGALAKKQ---- 596 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~------~~~~~~~---~~~~~l~~~G~~v~~~~~RG~g~~g~~~~------~~~~~~~~~---- 596 (789)
+..|.||++||..+.. ....|.. .+...|.++||.|+++|++|.|.....-. ..+....+.
T Consensus 50 ~~~~pVVLvHG~~g~~~~~~~~~~~~W~~~~~~l~~~L~~~Gy~Via~Dl~G~G~S~~~~~~l~~~i~~g~g~sg~~~~~ 129 (431)
T 2hih_A 50 KNKDPFVFVHGFTGFVGEVAAKGENYWGGTKANLRNHLRKAGYETYEASVSALASNHERAVELYYYLKGGRVDYGAAHSE 129 (431)
T ss_dssp SCSSCEEEECCTTCCCGGGSCTTCCTTTTTTCCHHHHHHHTTCCEEEECCCSSSCHHHHHHHHHHHHHCEEEECCHHHHH
T ss_pred CCCCeEEEECCCCCCcccccccchhhhhccHHHHHHHHHhCCCEEEEEcCCCCCCCccchHHhhhhhhhccccccccccc
Confidence 4456789999987642 1234431 24455655899999999999764211000 000000000
Q ss_pred -chHHHHHHHHHHHHHcCCCC-CCcEEEEeeChHHHHHHHHHHh--------------------------CCCceeEEEe
Q 003878 597 -NCFDDFISASEYLISAGYTQ-SRKLCIEGGSNGGLLVGACINQ--------------------------RPDLFGCALA 648 (789)
Q Consensus 597 -~~~~D~~~~~~~L~~~~~~d-~~~i~i~G~S~GG~l~~~~~~~--------------------------~pd~f~a~v~ 648 (789)
..++++.+.+..+++. .. ..++.++|||+||+++..++.. +|++++.+|+
T Consensus 130 ~~~~~~~a~dl~~ll~~--l~~~~kv~LVGHSmGG~iA~~lA~~l~~~~~~~~~~~~~~gg~i~~l~~g~~p~~V~slv~ 207 (431)
T 2hih_A 130 KYGHERYGKTYEGVLKD--WKPGHPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFKGGQDNMVTSITT 207 (431)
T ss_dssp HHTCCSEEEEECCSCTT--CBTTBCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHCSCCCHHHHCCCCSCEEEEEE
T ss_pred cCCHHHHHHHHHHHHHH--hCCCCCEEEEEEChhHHHHHHHHHHhccccccchhhccccccccccccccCcccceeEEEE
Confidence 0000000000011111 12 2689999999999999988765 6899999988
Q ss_pred cCCc
Q 003878 649 HVGV 652 (789)
Q Consensus 649 ~~p~ 652 (789)
..+.
T Consensus 208 i~tP 211 (431)
T 2hih_A 208 IATP 211 (431)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 7653
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.049 Score=58.12 Aligned_cols=198 Identities=11% Similarity=0.016 Sum_probs=116.0
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.+++|.+++..||++-. ...+|+++++.+...+ .++......+ .++++.+.++.|++.
T Consensus 76 ~~l~~d~~~~~ly~~D~------------------~~~~I~r~~~~g~~~~-~~~~~~~~~p---~glavd~~~g~ly~~ 133 (349)
T 3v64_C 76 IALDFHHRRELVFWSDV------------------TLDRILRANLNGSNVE-EVVSTGLESP---GGLAVDWVHDKLYWT 133 (349)
T ss_dssp EEEEEETTTTEEEEEET------------------TTTEEEEEETTSCSCE-EEECSSCSCC---CEEEEETTTTEEEEE
T ss_pred EEEEEeccccEEEEEec------------------cCCceEEEecCCCCce-EEEeCCCCCc---cEEEEecCCCeEEEE
Confidence 67899998899998732 2346888888764322 2222221222 367888888888776
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-cccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-DGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
... ...|+++++++.. ...+. .+.. ..-..+.|.++.||+..... ..+|+++++++..
T Consensus 134 d~~----~~~I~~~~~dG~~--------------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~--~~~I~r~~~dG~~ 193 (349)
T 3v64_C 134 DSG----TSRIEVANLDGAH--------------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPRIEASSMDGSG 193 (349)
T ss_dssp ETT----TTEEEEEETTSCS--------------CEEEECTTCSCEEEEEEETTTTEEEEEECSS--SCEEEEEETTSCS
T ss_pred cCC----CCeEEEEcCCCCc--------------eEEEEeCCCCCcceEEEecCcCeEEEeccCC--CCEEEEEeCCCCC
Confidence 432 3579999987631 11222 1211 11224678788888765332 4789999998754
Q ss_pred CeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceeeec-ccCCeeEEEeecccCCcEEEEEEcCCC
Q 003878 396 DWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQL-PIEIGSVNAISARREDSVVFISFTSFL 473 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l-~~~~~~v~~~s~s~d~~~l~~~~ss~~ 473 (789)
.+.++... -..-.++++++ ++.||++-... .+|++++++ |...+.+ ........+++. +++.++++- .
T Consensus 194 -~~~~~~~~-~~~PnGla~d~~~~~lY~aD~~~--~~I~~~~~d-G~~~~~~~~~~~~~P~giav--~~~~ly~td---~ 263 (349)
T 3v64_C 194 -RRIIADTH-LFWPNGLTIDYAGRRMYWVDAKH--HVIERANLD-GSHRKAVISQGLPHPFAITV--FEDSLYWTD---W 263 (349)
T ss_dssp -CEESCCSS-CSCEEEEEEETTTTEEEEEETTT--TEEEEEETT-SCSCEEEECSSCSSEEEEEE--ETTEEEEEE---T
T ss_pred -cEEEEECC-CCCcceEEEeCCCCEEEEEECCC--CEEEEEeCC-CCceEEEEeCCCCCceEEEE--ECCEEEEec---C
Confidence 34444432 23346788885 46777764433 489999997 5432332 222222334444 345666642 2
Q ss_pred CCcEEEEEECCCCC
Q 003878 474 IPGIVYQCNLKTET 487 (789)
Q Consensus 474 ~P~~ly~~dl~tg~ 487 (789)
.-..|.+++..+|+
T Consensus 264 ~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 264 HTKSINSANKFTGK 277 (349)
T ss_dssp TTTEEEEEETTTCC
T ss_pred CCCeEEEEEccCCC
Confidence 34578888865664
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0082 Score=60.89 Aligned_cols=191 Identities=8% Similarity=0.005 Sum_probs=118.3
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.++.++ ++.||.+... ..+|.+.++.++.....+ .. . ..+ +...+++|+.|+..
T Consensus 58 qGL~~~--~~~Ly~stG~------------------~g~v~~iD~~Tgkv~~~~-l~--~-~~F--geGit~~g~~Ly~l 111 (268)
T 3nok_A 58 QGLVFH--QGHFFESTGH------------------QGTLRQLSLESAQPVWME-RL--G-NIF--AEGLASDGERLYQL 111 (268)
T ss_dssp EEEEEE--TTEEEEEETT------------------TTEEEECCSSCSSCSEEE-EC--T-TCC--EEEEEECSSCEEEE
T ss_pred ceEEEE--CCEEEEEcCC------------------CCEEEEEECCCCcEEeEE-CC--C-Ccc--eeEEEEeCCEEEEE
Confidence 577875 5788877432 223888888877655544 22 2 222 34457788888776
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCe
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDW 397 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~ 397 (789)
... .+.++++|.++++ ....+... ...+. .++||++||+ ++ + ..+|..+|.++.+..
T Consensus 112 tw~----~~~v~V~D~~Tl~-------------~~~ti~~~-~eGwG-Lt~Dg~~L~v-Sd--G-s~~l~~iDp~T~~v~ 168 (268)
T 3nok_A 112 TWT----EGLLFTWSGMPPQ-------------RERTTRYS-GEGWG-LCYWNGKLVR-SD--G-GTMLTFHEPDGFALV 168 (268)
T ss_dssp ESS----SCEEEEEETTTTE-------------EEEEEECS-SCCCC-EEEETTEEEE-EC--S-SSEEEEECTTTCCEE
T ss_pred Ecc----CCEEEEEECCcCc-------------EEEEEeCC-CceeE-EecCCCEEEE-EC--C-CCEEEEEcCCCCeEE
Confidence 532 4779999998842 11122111 11222 4578988876 44 2 468999999887632
Q ss_pred EEecc-CC--CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-------------CeeEEEeecccC
Q 003878 398 FEVIP-EA--ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-------------IGSVNAISARRE 461 (789)
Q Consensus 398 ~~l~~-~~--~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-------------~~~v~~~s~s~d 461 (789)
..+.- .. +-..+..+.+.+ +.+++..... ..|.++|+++|+.+..|.+. .....+++++++
T Consensus 169 ~~I~V~~~g~~v~~lNeLe~~d-G~lyanvw~s--~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~ 245 (268)
T 3nok_A 169 GAVQVKLRGQPVELINELECAN-GVIYANIWHS--SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG 245 (268)
T ss_dssp EEEECEETTEECCCEEEEEEET-TEEEEEETTC--SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred EEEEeCCCCcccccccccEEeC-CEEEEEECCC--CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC
Confidence 22221 11 112455677776 7877655332 48999999999987776542 124578899999
Q ss_pred CcEEEEEEcCCCCCcEEEEEEC
Q 003878 462 DSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 462 ~~~l~~~~ss~~~P~~ly~~dl 483 (789)
+++++++---| +.+|++.+
T Consensus 246 ~~rlfVTGK~W---p~~~ev~~ 264 (268)
T 3nok_A 246 SGRIFMTGKLW---PRLFEVRL 264 (268)
T ss_dssp TCCEEEEETTC---SEEEEEEE
T ss_pred CCEEEEeCCCC---CceEEEEE
Confidence 99888876544 66666543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.03 Score=60.66 Aligned_cols=199 Identities=11% Similarity=-0.005 Sum_probs=115.9
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+++|.+++..||++-. ...+|+++++.+...+ .++......+ .++++.+.++.|++
T Consensus 118 ~~gl~~d~~~~~ly~~D~------------------~~~~I~r~~~~g~~~~-~~~~~~~~~p---~glavd~~~g~lY~ 175 (386)
T 3v65_B 118 AIALDFHHRRELVFWSDV------------------TLDRILRANLNGSNVE-EVVSTGLESP---GGLAVDWVHDKLYW 175 (386)
T ss_dssp EEEEEEETTTTEEEEEET------------------TTTEEEEEETTSCCEE-EEECSSCSCC---CCEEEETTTTEEEE
T ss_pred cEEEEEecCCCeEEEEeC------------------CCCcEEEEecCCCCcE-EEEeCCCCCc---cEEEEEeCCCeEEE
Confidence 367999998889988732 2346888888654322 2221111122 25778888888877
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-cccc-eeEEEecCCCEEEEEECCCCCCceEEEEECCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 394 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~ 394 (789)
.... ...|+++++++.. ...+.. +... .-..+.|.+..||+.... ...+|+++++++.
T Consensus 176 ~d~~----~~~I~~~~~dg~~--------------~~~l~~~~l~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG~ 235 (386)
T 3v65_B 176 TDSG----TSRIEVANLDGAH--------------RKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIEASSMDGS 235 (386)
T ss_dssp EETT----TTEEEECBTTSCS--------------CEEEECSSCSCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred EcCC----CCeEEEEeCCCCc--------------eEEeecCCCCCCcEEEEEcCCCeEEEeccC--CCCEEEEEeCCCC
Confidence 6432 3578888887531 112221 2111 122467778888876432 2478999999876
Q ss_pred CCeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceeeec-ccCCeeEEEeecccCCcEEEEEEcCC
Q 003878 395 NDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQL-PIEIGSVNAISARREDSVVFISFTSF 472 (789)
Q Consensus 395 ~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l-~~~~~~v~~~s~s~d~~~l~~~~ss~ 472 (789)
. .+.++... -..-.++++++ ++.||++-... .+|++++++ |...+.+ ........+++. +++.++++-
T Consensus 236 ~-~~~~~~~~-~~~PnGlavd~~~~~lY~aD~~~--~~I~~~d~d-G~~~~~~~~~~~~~P~giav--~~~~ly~td--- 305 (386)
T 3v65_B 236 G-RRIIADTH-LFWPNGLTIDYAGRRMYWVDAKH--HVIERANLD-GSHRKAVISQGLPHPFAITV--FEDSLYWTD--- 305 (386)
T ss_dssp S-CEEEECSS-CSCEEEEEEEGGGTEEEEEETTT--TEEEEECTT-SCSCEEEECSSCSSEEEEEE--ETTEEEEEE---
T ss_pred C-cEEEEECC-CCCeeeEEEeCCCCEEEEEECCC--CEEEEEeCC-CCeeEEEEECCCCCceEEEE--ECCEEEEee---
Confidence 4 34444333 23346788874 46787764433 489999997 4432333 222222334444 345666653
Q ss_pred CCCcEEEEEECCCCC
Q 003878 473 LIPGIVYQCNLKTET 487 (789)
Q Consensus 473 ~~P~~ly~~dl~tg~ 487 (789)
..-..|.++|..+|+
T Consensus 306 ~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 306 WHTKSINSANKFTGK 320 (386)
T ss_dssp TTTTEEEEEETTTCC
T ss_pred CCCCeEEEEECCCCc
Confidence 244688888866664
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.05 Score=55.48 Aligned_cols=193 Identities=11% Similarity=0.039 Sum_probs=104.8
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..++++++||+ |+++.. ....|++++... ....+..+.......++.+++||+. ++
T Consensus 59 ~~~i~~~~~g~-l~v~~~------------------~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~~~~g~l-~v 114 (299)
T 2z2n_A 59 VMCLTISSDGE-VWFTEN------------------AANKIGRITKKG----IIKEYTLPNPDSAPYGITEGPNGDI-WF 114 (299)
T ss_dssp EEEEEECTTSC-EEEEET------------------TTTEEEEECTTS----CEEEEECSSTTCCEEEEEECTTSCE-EE
T ss_pred eeeEEECCCCC-EEEeCC------------------CCCeEEEECCCC----cEEEEeCCCcCCCceeeEECCCCCE-EE
Confidence 35678888886 555432 123467666531 1222332212223457888999864 33
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
.... ...|++++. ++. ........... .....++++| .+|+.... ...|++++. +++
T Consensus 115 ~~~~----~~~i~~~d~-~g~------------~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~---~~~i~~~~~-~g~ 172 (299)
T 2z2n_A 115 TEMN----GNRIGRITD-DGK------------IREYELPNKGSYPSFITLGSDN-ALWFTENQ---NNAIGRITE-SGD 172 (299)
T ss_dssp EETT----TTEEEEECT-TCC------------EEEEECSSTTCCEEEEEECTTS-CEEEEETT---TTEEEEECT-TCC
T ss_pred EecC----CceEEEECC-CCC------------EEEecCCCCCCCCceEEEcCCC-CEEEEeCC---CCEEEEEcC-CCc
Confidence 3321 356888887 321 00001111111 1122366777 46655432 367999998 554
Q ss_pred CeEEe-ccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC--CeeEEEeecccCCcEEEEEEcCC
Q 003878 396 DWFEV-IPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAISARREDSVVFISFTSF 472 (789)
Q Consensus 396 ~~~~l-~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~--~~~v~~~s~s~d~~~l~~~~ss~ 472 (789)
...+ .+.. .....++.+.+++.+++....++ .|++++. +|+. ..+..+ ...+..+..++++. ++++..
T Consensus 173 -~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~~--~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~-- 243 (299)
T 2z2n_A 173 -ITEFKIPTP-ASGPVGITKGNDDALWFVEIIGN--KIGRITT-SGEI-TEFKIPTPNARPHAITAGAGID-LWFTEW-- 243 (299)
T ss_dssp -EEEEECSST-TCCEEEEEECTTSSEEEEETTTT--EEEEECT-TCCE-EEEECSSTTCCEEEEEECSTTC-EEEEET--
T ss_pred -EEEeeCCCC-CCcceeEEECCCCCEEEEccCCc--eEEEECC-CCcE-EEEECCCCCCCceeEEECCCCC-EEEecc--
Confidence 3433 2322 23456788877667776554333 7899999 5765 333332 34456777788876 666532
Q ss_pred CCCcEEEEEECCCC
Q 003878 473 LIPGIVYQCNLKTE 486 (789)
Q Consensus 473 ~~P~~ly~~dl~tg 486 (789)
....++++|. ++
T Consensus 244 -~~~~i~~~d~-~g 255 (299)
T 2z2n_A 244 -GANKIGRLTS-NN 255 (299)
T ss_dssp -TTTEEEEEET-TT
T ss_pred -CCceEEEECC-CC
Confidence 3568999998 45
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.047 Score=58.26 Aligned_cols=162 Identities=7% Similarity=-0.053 Sum_probs=98.0
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.+++..+.++.||++.. ....|++.++.... ...+.... -..-.+++++|++.+|+++
T Consensus 119 ~glavd~~~g~ly~~d~------------------~~~~I~~~~~dG~~--~~~l~~~~--l~~P~~iavdp~~g~ly~t 176 (349)
T 3v64_C 119 GGLAVDWVHDKLYWTDS------------------GTSRIEVANLDGAH--RKVLLWQS--LEKPRAIALHPMEGTIYWT 176 (349)
T ss_dssp CEEEEETTTTEEEEEET------------------TTTEEEEEETTSCS--CEEEECTT--CSCEEEEEEETTTTEEEEE
T ss_pred cEEEEecCCCeEEEEcC------------------CCCeEEEEcCCCCc--eEEEEeCC--CCCcceEEEecCcCeEEEe
Confidence 56888888889988732 23468888876543 22333221 1123478899999998877
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-ccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
.... ...|+.+++++.. ...+.. +.. ..-..++++++.||+.-. ...+|.++++++..
T Consensus 177 d~~~---~~~I~r~~~dG~~--------------~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~ 236 (349)
T 3v64_C 177 DWGN---TPRIEASSMDGSG--------------RRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSH 236 (349)
T ss_dssp ECSS---SCEEEEEETTSCS--------------CEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS
T ss_pred ccCC---CCEEEEEeCCCCC--------------cEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCc
Confidence 5321 3679999987631 111211 111 112347888899998643 34789999998754
Q ss_pred CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL 446 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l 446 (789)
.+.++... ...-.++++.. +.+|++-..+ .+|.+++..+|+..+.+
T Consensus 237 -~~~~~~~~-~~~P~giav~~-~~ly~td~~~--~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 237 -RKAVISQG-LPHPFAITVFE-DSLYWTDWHT--KSINSANKFTGKNQEII 282 (349)
T ss_dssp -CEEEECSS-CSSEEEEEEET-TEEEEEETTT--TEEEEEETTTCCSCEEE
T ss_pred -eEEEEeCC-CCCceEEEEEC-CEEEEecCCC--CeEEEEEccCCCccEEe
Confidence 34444433 23345777765 7887765444 37888886557654444
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.088 Score=55.19 Aligned_cols=200 Identities=12% Similarity=0.022 Sum_probs=113.8
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCC--CCcEEEEecC-CCCeeEEEEEEecCCcE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ--SEDILCWKDP-EHPKYIFSGHVTEDGQY 313 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~--~~~~~~~~~~-~~~~~~~~~~~SpDG~~ 313 (789)
..+++|.++++.||++-. ...+|++.++.+.. .....+.... ..+ .++++++.++.
T Consensus 32 p~g~~~d~~~~~ly~~D~------------------~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p---~glavd~~~~~ 90 (316)
T 1ijq_A 32 VVALDTEVASNRIYWSDL------------------SQRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSN 90 (316)
T ss_dssp EEEEEEETTTTEEEEEET------------------TTTEEEEEEC--------CEEEECSSCSCC---CEEEEETTTTE
T ss_pred eEEEEEEeCCCEEEEEEC------------------CCCcEEEEECCCCCCCcccEEEEeCCCCCc---CEEEEeecCCe
Confidence 368999999889998732 23468888876510 1122233211 222 35778888888
Q ss_pred EEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-ccc-ceeEEEecCCCEEEEEECCCCCCceEEEEEC
Q 003878 314 LVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDL 391 (789)
Q Consensus 314 l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl 391 (789)
|++.... ...|.++++++.. ...+.. ... ..-..+.|.++.+|+.... ...+|+++++
T Consensus 91 ly~~d~~----~~~I~~~~~~g~~--------------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~ 150 (316)
T 1ijq_A 91 IYWTDSV----LGTVSVADTKGVK--------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGL 150 (316)
T ss_dssp EEEEETT----TTEEEEEETTSSS--------------EEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEET
T ss_pred EEEEECC----CCEEEEEeCCCCc--------------eEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcC
Confidence 8776422 4678899987521 112222 111 1122367778888876432 2478999999
Q ss_pred CCCCCeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceeeec-ccC--CeeEEEeecccCCcEEEE
Q 003878 392 KEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQL-PIE--IGSVNAISARREDSVVFI 467 (789)
Q Consensus 392 ~~~~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l-~~~--~~~v~~~s~s~d~~~l~~ 467 (789)
++.. .+.++... -..-.++++++ ++.||+.-... .+|++++++ |...+.+ ..+ .....+++. +++.+++
T Consensus 151 dG~~-~~~~~~~~-~~~P~gla~d~~~~~lY~~D~~~--~~I~~~d~d-g~~~~~~~~~~~~~~~P~giav--~~~~ly~ 223 (316)
T 1ijq_A 151 NGVD-IYSLVTEN-IQWPNGITLDLLSGRLYWVDSKL--HSISSIDVN-GGNRKTILEDEKRLAHPFSLAV--FEDKVFW 223 (316)
T ss_dssp TSCC-EEEEECSS-CSCEEEEEEETTTTEEEEEETTT--TEEEEEETT-SCSCEEEEECTTTTSSEEEEEE--ETTEEEE
T ss_pred CCCC-eEEEEECC-CCCceEEEEeccCCEEEEEECCC--CeEEEEecC-CCceEEEeecCCccCCcEEEEE--ECCEEEE
Confidence 7654 33444332 23456788885 36777655433 489999998 5432333 211 122234444 3456766
Q ss_pred EEcCCCCCcEEEEEECCCCC
Q 003878 468 SFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 468 ~~ss~~~P~~ly~~dl~tg~ 487 (789)
+- ..-.+|++++..+|+
T Consensus 224 ~d---~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 224 TD---IINEAIFSANRLTGS 240 (316)
T ss_dssp EE---TTTTEEEEEETTTCC
T ss_pred EE---CCCCeEEEEeCCCCc
Confidence 43 234688999877665
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0065 Score=63.37 Aligned_cols=194 Identities=12% Similarity=0.114 Sum_probs=107.6
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.+++|+|||+.|+++.. ....|++++.. +. ..++..+. ....++.+++||+.+ +.
T Consensus 48 egp~~~~~g~~l~~~d~------------------~~~~i~~~~~~-g~---~~~~~~~~--~~~~gl~~d~dG~l~-v~ 102 (305)
T 3dr2_A 48 EGPAWWEAQRTLVWSDL------------------VGRRVLGWRED-GT---VDVLLDAT--AFTNGNAVDAQQRLV-HC 102 (305)
T ss_dssp EEEEEEGGGTEEEEEET------------------TTTEEEEEETT-SC---EEEEEESC--SCEEEEEECTTSCEE-EE
T ss_pred cCCeEeCCCCEEEEEEC------------------CCCEEEEEeCC-CC---EEEEeCCC--CccceeeECCCCCEE-EE
Confidence 68999999999998843 23458888763 22 23333332 234578999999844 33
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc------ceeEEEecCCCEEEEEE-----CC-------
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD------AQYEVIANDDTVFTFLT-----NK------- 379 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~s~dG~~l~~~t-----n~------- 379 (789)
.. . ...|++++.+ +. ...+..... .....++++|+ +|+.. ..
T Consensus 103 ~~-~---~~~v~~~~~~-g~--------------~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~ 162 (305)
T 3dr2_A 103 EH-G---RRAITRSDAD-GQ--------------AHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPA 162 (305)
T ss_dssp ET-T---TTEEEEECTT-SC--------------EEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCC
T ss_pred EC-C---CCEEEEECCC-CC--------------EEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCcccccccccc
Confidence 21 1 2468888875 22 111111100 11234788886 55421 00
Q ss_pred --CCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCE-EEEEEEeC---CeEEEEEEECCCCce--eeec-ccCC
Q 003878 380 --DAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ-MIVSYLSD---VKYVLQIRDLKNGSL--LHQL-PIEI 450 (789)
Q Consensus 380 --~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~-lv~~~~~~---g~~~L~~~dl~tG~~--~~~l-~~~~ 450 (789)
......|++++.++++ ++.+. . .....++++++++. |++..... +...|++++++++.. .+.+ ..+.
T Consensus 163 ~~~~~~~~v~~~d~~~g~-~~~~~-~--~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~ 238 (305)
T 3dr2_A 163 DPELAHHSVYRLPPDGSP-LQRMA-D--LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPD 238 (305)
T ss_dssp CCSSSCEEEEEECSSSCC-CEEEE-E--ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSS
T ss_pred ccccCCCeEEEEcCCCCc-EEEEe-c--CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCC
Confidence 1124689999987765 45444 2 23346788888654 65554431 124799998864331 0111 1122
Q ss_pred eeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 451 GSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 451 ~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
+...++..+++++ ++++. ...|++|+.+..
T Consensus 239 ~~pdgi~~d~~G~-lwv~~-----~~gv~~~~~~g~ 268 (305)
T 3dr2_A 239 GLPDGFCVDRGGW-LWSSS-----GTGVCVFDSDGQ 268 (305)
T ss_dssp SCCCSEEECTTSC-EEECC-----SSEEEEECTTSC
T ss_pred CCCCeEEECCCCC-EEEec-----CCcEEEECCCCC
Confidence 2233456677887 55532 357999998533
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.12 Score=54.18 Aligned_cols=163 Identities=7% Similarity=0.006 Sum_probs=97.1
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.++++.+.++.||++-. ...+|.+.++.... ...+..... ....+++++|++.+|++.
T Consensus 80 ~glavd~~~~~ly~~d~------------------~~~~I~~~~~~g~~--~~~~~~~~~--~~P~~iavdp~~g~ly~~ 137 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDS------------------VLGTVSVADTKGVK--RKTLFRENG--SKPRAIVVDPVHGFMYWT 137 (316)
T ss_dssp CEEEEETTTTEEEEEET------------------TTTEEEEEETTSSS--EEEEEECTT--CCEEEEEEETTTTEEEEE
T ss_pred CEEEEeecCCeEEEEEC------------------CCCEEEEEeCCCCc--eEEEEECCC--CCcceEEeCCCCCEEEEE
Confidence 57888878888988732 23467877775432 222333211 123478899999988876
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-ccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
... ....|+.+++++.. ...+.. ... ..-..++++++.||+.-. ...+|.++++++..
T Consensus 138 d~~---~~~~I~~~~~dG~~--------------~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~ 197 (316)
T 1ijq_A 138 DWG---TPAKIKKGGLNGVD--------------IYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGN 197 (316)
T ss_dssp ECS---SSCEEEEEETTSCC--------------EEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS
T ss_pred ccC---CCCeEEEEcCCCCC--------------eEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCc
Confidence 532 13679999987521 112221 111 112347888999998643 35789999998654
Q ss_pred CeEEeccCC-CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec
Q 003878 396 DWFEVIPEA-ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL 446 (789)
Q Consensus 396 ~~~~l~~~~-~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l 446 (789)
.+.+.... ....-.++++.. +.+|++...+ .+|.+++..+|+..+.+
T Consensus 198 -~~~~~~~~~~~~~P~giav~~-~~ly~~d~~~--~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 198 -RKTILEDEKRLAHPFSLAVFE-DKVFWTDIIN--EAIFSANRLTGSDVNLL 245 (316)
T ss_dssp -CEEEEECTTTTSSEEEEEEET-TEEEEEETTT--TEEEEEETTTCCCCEEE
T ss_pred -eEEEeecCCccCCcEEEEEEC-CEEEEEECCC--CeEEEEeCCCCcceEEE
Confidence 34444321 112345777766 7888765433 47888888667654433
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.013 Score=64.26 Aligned_cols=197 Identities=8% Similarity=-0.086 Sum_probs=113.8
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
..++|+|||+ ||++.. ....|+++++.++.. ..+...... .. ++++|+|+.|++.
T Consensus 134 ~~la~d~~g~-lyv~d~------------------~~~~I~~id~~~g~~--~~~~~~~~~---~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 134 WGIAAVGNNT-VLAYQR------------------DDPRVRLISVDDNKV--TTVHPGFKG---GK-PAVTKDKQRVYSI 188 (409)
T ss_dssp EEEEECSTTE-EEEEET------------------TTTEEEEEETTTTEE--EEEEETCCB---CB-CEECTTSSEEEEE
T ss_pred eEEEEeCCCC-EEEEec------------------CCCcEEEEECCCCEE--EEeeccCCC---Cc-eeEecCCCcEEEE
Confidence 6789999987 666532 235688888865432 222232221 12 7899999988766
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEee----e-ccccceeEEEecCCCEEEEEECCCCCCceEEEEECC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL----I-DGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLK 392 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l----~-~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~ 392 (789)
.... ...|++++..++. . ...+ . .........++|++..||+ ++. +.+|++++++
T Consensus 189 d~~~---~~~I~~~d~~~~~------------~-~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~---~~~I~~~d~~ 248 (409)
T 3hrp_A 189 GWEG---THTVYVYMKASGW------------A-PTRIGQLGSTFSGKIGAVALDETEEWLYF-VDS---NKNFGRFNVK 248 (409)
T ss_dssp BSST---TCEEEEEEGGGTT------------C-EEEEEECCTTSCSCCCBCEECTTSSEEEE-ECT---TCEEEEEETT
T ss_pred ecCC---CceEEEEEcCCCc------------e-eEEeeeccchhcCCcEEEEEeCCCCeEEE-EEC---CCcEEEEECC
Confidence 4322 2379999876531 1 1111 1 1111112347886778888 443 4689999998
Q ss_pred CCCCeEEec---cCCCCcee--eeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceeeeccc-C--------------Ce
Q 003878 393 EPNDWFEVI---PEAERDVL--ESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI-E--------------IG 451 (789)
Q Consensus 393 ~~~~~~~l~---~~~~~~~i--~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~-~--------------~~ 451 (789)
++. ...+. .......- .++++++ ++.||++...+ .+|++++.+ |+. ..+.. . ..
T Consensus 249 ~~~-~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~--~~I~~~~~~-g~~-~~~~g~~~~~g~~dg~~~~~~~~ 323 (409)
T 3hrp_A 249 TQE-VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL--SSVYKITPD-GEC-EWFCGSATQKTVQDGLREEALFA 323 (409)
T ss_dssp TCC-EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT--TEEEEECTT-CCE-EEEEECTTCCSCBCEEGGGCBCS
T ss_pred CCC-EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC--CEEEEEecC-CCE-EEEEeCCCCCCcCCCcccccEeC
Confidence 775 23220 11111111 2788887 47888765544 379999987 543 22211 0 11
Q ss_pred eEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 452 SVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 452 ~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
...++.+++++. ++++-. ..-.+|+++++.+++
T Consensus 324 ~P~gia~d~dG~-lyvad~--~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 324 QPNGMTVDEDGN-FYIVDG--FKGYCLRKLDILDGY 356 (409)
T ss_dssp SEEEEEECTTCC-EEEEET--TTTCEEEEEETTTTE
T ss_pred CCeEEEEeCCCC-EEEEeC--CCCCEEEEEECCCCE
Confidence 245677888887 665532 035689999977774
|
| >4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0006 Score=76.22 Aligned_cols=115 Identities=23% Similarity=0.155 Sum_probs=78.0
Q ss_pred CCccEEEEEcCCCCccCCCCC--CHHHHHHHHcCCeEEEEEeecCCCCCCh---hHHh--cccccCCcchHHHHHHHHHH
Q 003878 536 GSHPCLLYGYGGFNISVTPSF--SVSRTILMRHLGAVFCIANIRGGGEYGE---EWHK--GGALAKKQNCFDDFISASEY 608 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~--~~~~~~~l~~~G~~v~~~~~RG~g~~g~---~~~~--~~~~~~~~~~~~D~~~~~~~ 608 (789)
+..|++|++-|- +.. .... ...+..+..+.|..+++...|=-|+.-+ ...+ ..+...-..++.|+...+++
T Consensus 41 ~~gPIfl~~gGE-g~~-~~~~~~~g~~~~lA~~~~a~~v~lEHRyYG~S~P~~~~st~~~nL~yLt~eQALaD~a~fi~~ 118 (472)
T 4ebb_A 41 GEGPIFFYTGNE-GDV-WAFANNSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFAELLRA 118 (472)
T ss_dssp TTCCEEEEECCS-SCH-HHHHHHCHHHHHHHHHHTCEEEEECCTTSTTCCTTGGGGGSTTSCTTCSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCC-ccc-cccccCccHHHHHHHHhCCeEEEEecccccCCcCCCCCCccccccccCCHHHHHHHHHHHHHH
Confidence 447999999552 211 1111 1223456677899999999996554322 1111 11122334567899999999
Q ss_pred HHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 609 LISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 609 L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
+...--....+++++|+|+||.|++++-.++|+++.|+++.+++
T Consensus 119 ~k~~~~~~~~pwI~~GGSY~G~LaAW~R~kYP~lv~ga~ASSAp 162 (472)
T 4ebb_A 119 LRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAP 162 (472)
T ss_dssp HHHHTTCTTCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETCC
T ss_pred HHhhcCCCCCCEEEEccCccchhhHHHHhhCCCeEEEEEecccc
Confidence 88764344579999999999999999999999999998887653
|
| >2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus zalihae} PDB: 3umj_A 2z5g_A 1ji3_A 3auk_A 2w22_A* 1ku0_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00059 Score=73.90 Aligned_cols=102 Identities=9% Similarity=0.039 Sum_probs=61.1
Q ss_pred CccEEEEEcCCCCccCC-----CCCCH---HHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHH
Q 003878 537 SHPCLLYGYGGFNISVT-----PSFSV---SRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEY 608 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~-----~~~~~---~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~ 608 (789)
+.|.||++||..+.... ..|.. .....|.++||.|+.+|++|.|.. +..+ .++...++.
T Consensus 5 ~~~pVVLvHG~~g~~~~~~~~~~yW~~~~~~la~~L~~~G~~Via~Dl~g~G~s---~~~a----------~~l~~~i~~ 71 (387)
T 2dsn_A 5 NDAPIVLLHGFTGWGREEMFGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLSSN---WDRA----------CEAYAQLVG 71 (387)
T ss_dssp CCCCEEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEEECCCSSBCH---HHHH----------HHHHHHHHC
T ss_pred CCCcEEEECCCCCCCcccccccchhhhhhHHHHHHHHHCCCEEEEecCCCCCCc---cccH----------HHHHHHHHh
Confidence 34558889998765422 22331 123556558999999999986531 1110 111111110
Q ss_pred --------HHHc-----------C----CCCCCcEEEEeeChHHHHHHHHHHh-------------------CC------
Q 003878 609 --------LISA-----------G----YTQSRKLCIEGGSNGGLLVGACINQ-------------------RP------ 640 (789)
Q Consensus 609 --------L~~~-----------~----~~d~~~i~i~G~S~GG~l~~~~~~~-------------------~p------ 640 (789)
+.+. . ....+++.++||||||+++..++.+ +|
T Consensus 72 ~~vDy~~~~a~~~~~~~~~~~l~~ll~~~~~~~kv~LVGHSmGG~va~~~a~~l~~~~~~e~~~~~~~~~~~~P~~~g~~ 151 (387)
T 2dsn_A 72 GTVDYGAAHAAKHGHARFGRTYPGLLPELKRGGRIHIIAHSQGGQTARMLVSLLENGSQEEREYAKAHNVSLSPLFEGGH 151 (387)
T ss_dssp EEEECCHHHHHHHTSCSEEEEECCSCGGGGTTCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCC
T ss_pred hhhhhhhhhhhhccchhhhhhHHHHHHHhcCCCceEEEEECHHHHHHHHHHHHhccccccccccccccccccCccccccc
Confidence 1100 0 1234699999999999999988862 36
Q ss_pred CceeEEEecCC
Q 003878 641 DLFGCALAHVG 651 (789)
Q Consensus 641 d~f~a~v~~~p 651 (789)
++++.+|...+
T Consensus 152 ~~V~sLV~i~t 162 (387)
T 2dsn_A 152 HFVLSVTTIAT 162 (387)
T ss_dssp CCEEEEEEESC
T ss_pred cceeEEEEECC
Confidence 67888887654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.024 Score=57.46 Aligned_cols=207 Identities=15% Similarity=0.189 Sum_probs=115.7
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
.++++|.||+++||.+.. .+.+|+..++. +.....+.+.. .....++++.++|++++
T Consensus 29 lSGla~~~~~~~L~aV~d------------------~~~~I~~ld~~-g~v~~~i~l~g---~~D~EGIa~~~~g~~~v- 85 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTIN------------------KPAAIVEMTTN-GDLIRTIPLDF---VKDLETIEYIGDNQFVI- 85 (255)
T ss_dssp EEEEEEETTTTEEEEEEE------------------TTEEEEEEETT-CCEEEEEECSS---CSSEEEEEECSTTEEEE-
T ss_pred cceeEEeCCCCEEEEEEC------------------CCCeEEEEeCC-CCEEEEEecCC---CCChHHeEEeCCCEEEE-
Confidence 489999999999987643 24568877775 22222222221 12245788888887543
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEE--CCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVD--LKEP 394 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~d--l~~~ 394 (789)
. .++ ...++++++..... ...+.. ...+........+.+--.|++++++||+...++ ...|+.++ +.+.
T Consensus 86 s-~E~---~~~l~~~~v~~~~~-i~~~~~--~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~--p~~i~~~~g~~~~~ 156 (255)
T 3qqz_A 86 S-DER---DYAIYVISLTPNSE-VKILKK--IKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN--PIEVYKVNGLLSSN 156 (255)
T ss_dssp E-ETT---TTEEEEEEECTTCC-EEEEEE--EECCCSSCCCSSCCEEEEEETTTTEEEEEEESS--SEEEEEEESTTCSS
T ss_pred E-ECC---CCcEEEEEcCCCCe-eeeeee--eccccccccccCCcceEEEeCCCCEEEEEECcC--CceEEEEcccccCC
Confidence 3 232 35688887765210 000000 000000000111112345889999999876553 35788888 1221
Q ss_pred CCeEEec-----cCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCC---------eeEEEeecc
Q 003878 395 NDWFEVI-----PEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEI---------GSVNAISAR 459 (789)
Q Consensus 395 ~~~~~l~-----~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~---------~~v~~~s~s 459 (789)
. .+.+- ....-..++++++.+. +++++..... ..|..+|.+ |+.+..+.+.. ....+++++
T Consensus 157 ~-l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s--~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d 232 (255)
T 3qqz_A 157 E-LHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHES--RALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMD 232 (255)
T ss_dssp C-CEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTT--TEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEEC
T ss_pred c-eeeecchhhccccccCCceeEEEcCCCCeEEEEECCC--CeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEEC
Confidence 1 22210 0111224677888773 6777765544 478888987 77655555442 245788999
Q ss_pred cCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 460 REDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 460 ~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
++++ ++++ ..|..+|++...
T Consensus 233 ~~G~-lyIv----sE~n~~y~f~~~ 252 (255)
T 3qqz_A 233 ASGN-IYIV----SEPNRFYRFTPQ 252 (255)
T ss_dssp TTCC-EEEE----ETTTEEEEEEC-
T ss_pred CCCC-EEEE----cCCceEEEEEec
Confidence 9987 6665 467899998654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.017 Score=65.28 Aligned_cols=122 Identities=9% Similarity=0.019 Sum_probs=67.2
Q ss_pred EEEecCCCEEEEEECCCCCCceEEEEECCCCC-----------CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEE
Q 003878 364 EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-----------DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVL 432 (789)
Q Consensus 364 ~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~-----------~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L 432 (789)
..++|||+++|+ ++.. ..+|.++|+++.+ ....-++-. ..-..+++++++.+|++..-+ ++|
T Consensus 282 v~~sPDGk~v~V-~~~~--s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG--~gP~h~aF~~dG~aY~t~~ld--sqV 354 (595)
T 1fwx_A 282 CNMAPDKKHLCV-AGKL--SPTVTVLDVTRFDAVFYENADPRSAVVAEPELG--LGPLHTAFDGRGNAYTSLFLD--SQV 354 (595)
T ss_dssp EEECTTSSEEEE-ECTT--SSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC--SCEEEEEECTTSEEEEEETTT--TEE
T ss_pred EEEcCCCCEEEE-eCCC--CCeEEEEECcccccccccccCcccceEEEcCCC--CCcceEEECCCCeEEEEEecC--CcE
Confidence 458999998775 5543 3578888877431 011111111 223457788766555444333 478
Q ss_pred EEEECCC----------CceeeecccC--CeeEEE---eecccCCcEEEEEEc---------CCCCCcEEEEEECCCCCc
Q 003878 433 QIRDLKN----------GSLLHQLPIE--IGSVNA---ISARREDSVVFISFT---------SFLIPGIVYQCNLKTETP 488 (789)
Q Consensus 433 ~~~dl~t----------G~~~~~l~~~--~~~v~~---~s~s~d~~~l~~~~s---------s~~~P~~ly~~dl~tg~~ 488 (789)
.+||+++ .+.+..++.. .+.... .+.++||+.++..-. ++..|..-.++|..+++
T Consensus 355 ~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~- 433 (595)
T 1fwx_A 355 VKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK- 433 (595)
T ss_dssp EEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS-
T ss_pred EEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc-
Confidence 8899875 2233344433 233322 245789998765432 12345566777776664
Q ss_pred eEEEee
Q 003878 489 EMKIFR 494 (789)
Q Consensus 489 ~~~~l~ 494 (789)
++++.
T Consensus 434 -m~lv~ 438 (595)
T 1fwx_A 434 -MVLVH 438 (595)
T ss_dssp -CEEEE
T ss_pred -EEEEE
Confidence 55544
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.1 Score=53.13 Aligned_cols=190 Identities=11% Similarity=0.024 Sum_probs=101.9
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.++++.|||+ |+++.. ....|++++. ++. ...+..+........+.+++||+ +++.
T Consensus 102 ~~i~~~~~g~-l~v~~~------------------~~~~i~~~d~-~g~---~~~~~~~~~~~~~~~i~~~~~g~-l~v~ 157 (299)
T 2z2n_A 102 YGITEGPNGD-IWFTEM------------------NGNRIGRITD-DGK---IREYELPNKGSYPSFITLGSDNA-LWFT 157 (299)
T ss_dssp EEEEECTTSC-EEEEET------------------TTTEEEEECT-TCC---EEEEECSSTTCCEEEEEECTTSC-EEEE
T ss_pred eeeEECCCCC-EEEEec------------------CCceEEEECC-CCC---EEEecCCCCCCCCceEEEcCCCC-EEEE
Confidence 5677888874 555432 1235777766 221 12222221222345788899995 4443
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEee--ecccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL--IDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 394 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l--~~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~ 394 (789)
.. . ...|++++. ++. +... ..... .....++++|+ +|+.+.. ...|++++. ++
T Consensus 158 ~~-~---~~~i~~~~~-~g~--------------~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~---~~~i~~~~~-~g 213 (299)
T 2z2n_A 158 EN-Q---NNAIGRITE-SGD--------------ITEFKIPTPASGPVGITKGNDDA-LWFVEII---GNKIGRITT-SG 213 (299)
T ss_dssp ET-T---TTEEEEECT-TCC--------------EEEEECSSTTCCEEEEEECTTSS-EEEEETT---TTEEEEECT-TC
T ss_pred eC-C---CCEEEEEcC-CCc--------------EEEeeCCCCCCcceeEEECCCCC-EEEEccC---CceEEEECC-CC
Confidence 32 1 356888988 432 1111 11111 11123567776 6655432 357999998 55
Q ss_pred CCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC--CeeEEEeecccCCcEEEEEEcCC
Q 003878 395 NDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAISARREDSVVFISFTSF 472 (789)
Q Consensus 395 ~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~--~~~v~~~s~s~d~~~l~~~~ss~ 472 (789)
. ...+........+.++.+.+++.+++....+ ..|.+++.+ |+. ..+..+ ...+..+.. +++. ++++.+
T Consensus 214 ~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~--~~i~~~d~~-g~~-~~~~~~~~~~~~~~i~~-~~g~-l~v~~~-- 284 (299)
T 2z2n_A 214 E-ITEFKIPTPNARPHAITAGAGIDLWFTEWGA--NKIGRLTSN-NII-EEYPIQIKSAEPHGICF-DGET-IWFAME-- 284 (299)
T ss_dssp C-EEEEECSSTTCCEEEEEECSTTCEEEEETTT--TEEEEEETT-TEE-EEEECSSSSCCEEEEEE-CSSC-EEEEET--
T ss_pred c-EEEEECCCCCCCceeEEECCCCCEEEeccCC--ceEEEECCC-Cce-EEEeCCCCCCccceEEe-cCCC-EEEEec--
Confidence 4 4433222223456778888766777665333 378999984 654 344333 334556666 5554 666532
Q ss_pred CCCcEEEEEECCCC
Q 003878 473 LIPGIVYQCNLKTE 486 (789)
Q Consensus 473 ~~P~~ly~~dl~tg 486 (789)
...++++++.++
T Consensus 285 --~~~l~~~~~~~~ 296 (299)
T 2z2n_A 285 --CDKIGKLTLIKD 296 (299)
T ss_dssp --TTEEEEEEEC--
T ss_pred --CCcEEEEEcCcc
Confidence 368889888765
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.38 E-value=0.047 Score=57.47 Aligned_cols=162 Identities=9% Similarity=-0.005 Sum_probs=98.6
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.++++.+.++.||++-. ....|.+.++..... ..+.... -..-.++++.|++.+|+++
T Consensus 82 ~glavd~~~g~ly~~d~------------------~~~~I~~~~~dG~~~--~~l~~~~--~~~P~giavdp~~g~ly~t 139 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDS------------------ETNRIEVSNLDGSLR--KVLFWQE--LDQPRAIALDPSSGFMYWT 139 (318)
T ss_dssp CEEEEETTTTEEEEEET------------------TTTEEEEEETTSCSC--EEEECSS--CSSEEEEEEEGGGTEEEEE
T ss_pred cEEEEEcCCCeEEEEEC------------------CCCEEEEEECCCCcE--EEEEeCC--CCCccEEEEeCCCCEEEEE
Confidence 56888877888888732 234688888765322 2333221 1123478899988888876
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-ccccc-eeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-DGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
... ....|+.+++++.. ...+. .+... .-..++++++.||+.- ..+.+|+++++++..
T Consensus 140 d~~---~~~~I~r~~~dG~~--------------~~~~~~~~l~~Pnglavd~~~~~lY~aD---~~~~~I~~~d~dG~~ 199 (318)
T 3sov_A 140 DWG---EVPKIERAGMDGSS--------------RFIIINSEIYWPNGLTLDYEEQKLYWAD---AKLNFIHKSNLDGTN 199 (318)
T ss_dssp ECS---SSCEEEEEETTSCS--------------CEEEECSSCSCEEEEEEETTTTEEEEEE---TTTTEEEEEETTSCS
T ss_pred ecC---CCCEEEEEEcCCCC--------------eEEEEECCCCCccEEEEeccCCEEEEEE---CCCCEEEEEcCCCCc
Confidence 432 14679999987521 12222 12111 1234788899999864 345799999998754
Q ss_pred CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL 446 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l 446 (789)
.+.++... ...-.++++.. +.+|++-.. ...|.+++..+|+..+.|
T Consensus 200 -~~~~~~~~-~~~P~glav~~-~~lywtd~~--~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 200 -RQAVVKGS-LPHPFALTLFE-DILYWTDWS--THSILACNKYTGEGLREI 245 (318)
T ss_dssp -CEEEECSC-CSCEEEEEEET-TEEEEEETT--TTEEEEEETTTCCSCEEE
T ss_pred -eEEEecCC-CCCceEEEEeC-CEEEEEecC--CCeEEEEECCCCCceEEE
Confidence 44555422 23345777776 788877433 348889998777654444
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.026 Score=56.57 Aligned_cols=194 Identities=14% Similarity=0.146 Sum_probs=118.8
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.++.|++ ..||.+... .....|.+.++.++...... ..+.. . .+...+++|+.|+..
T Consensus 24 qGL~~~~--~~LyestG~----------------~g~S~v~~vD~~tgkv~~~~--~l~~~-~--fgeGi~~~~~~ly~l 80 (243)
T 3mbr_X 24 EGLFYLR--GHLYESTGE----------------TGRSSVRKVDLETGRILQRA--EVPPP-Y--FGAGIVAWRDRLIQL 80 (243)
T ss_dssp EEEEEET--TEEEEEECC----------------TTSCEEEEEETTTCCEEEEE--ECCTT-C--CEEEEEEETTEEEEE
T ss_pred ccEEEEC--CEEEEECCC----------------CCCceEEEEECCCCCEEEEE--eCCCC-c--ceeEEEEeCCEEEEE
Confidence 6888863 577776432 12457889999876543222 22222 2 234456678888776
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCe
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDW 397 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~ 397 (789)
... .+.++++|.++.. ....+..+ ...+. +++||++||+ +|. ..+|+.+|.++.+..
T Consensus 81 tw~----~~~v~v~D~~tl~-------------~~~ti~~~-~~Gwg-lt~dg~~L~v-Sdg---s~~l~~iDp~t~~~~ 137 (243)
T 3mbr_X 81 TWR----NHEGFVYDLATLT-------------PRARFRYP-GEGWA-LTSDDSHLYM-SDG---TAVIRKLDPDTLQQV 137 (243)
T ss_dssp ESS----SSEEEEEETTTTE-------------EEEEEECS-SCCCE-EEECSSCEEE-ECS---SSEEEEECTTTCCEE
T ss_pred Eee----CCEEEEEECCcCc-------------EEEEEeCC-CCceE-EeeCCCEEEE-ECC---CCeEEEEeCCCCeEE
Confidence 532 4779999998842 11122111 12233 4678888775 442 467999999887622
Q ss_pred EEeccCC---CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-------------CeeEEEeecccC
Q 003878 398 FEVIPEA---ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-------------IGSVNAISARRE 461 (789)
Q Consensus 398 ~~l~~~~---~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-------------~~~v~~~s~s~d 461 (789)
..+--.. +-..+..+.+.+ +++++.... .+.|.++|+++|+.+..|.+. .....+++.+++
T Consensus 138 ~~I~V~~~g~~~~~lNeLe~~~-G~lyanvw~--s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~ 214 (243)
T 3mbr_X 138 GSIKVTAGGRPLDNLNELEWVN-GELLANVWL--TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAE 214 (243)
T ss_dssp EEEECEETTEECCCEEEEEEET-TEEEEEETT--TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETT
T ss_pred EEEEEccCCcccccceeeEEeC-CEEEEEECC--CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCC
Confidence 2222111 113455677776 787755433 348999999999976666532 124578899999
Q ss_pred CcEEEEEEcCCCCCcEEEEEEC
Q 003878 462 DSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 462 ~~~l~~~~ss~~~P~~ly~~dl 483 (789)
+++++++---| +.+|.+.+
T Consensus 215 ~~~lfVTGK~w---p~~~~v~~ 233 (243)
T 3mbr_X 215 HDRLFVTGKRW---PMLYEIRL 233 (243)
T ss_dssp TTEEEEEETTC---SEEEEEEE
T ss_pred CCEEEEECCCC---CcEEEEEE
Confidence 99998876554 67777654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.36 E-value=0.16 Score=55.15 Aligned_cols=164 Identities=8% Similarity=0.015 Sum_probs=97.2
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.+++..+.++.||++-. ...+|.+.++..... ..++...... -.++++.|.+.+|+++
T Consensus 162 ~glavD~~~~~lY~~d~------------------~~~~I~~~~~~g~~~-~~l~~~~~~~---P~~iavdp~~g~ly~t 219 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDS------------------VLGTVSVADTKGVKR-KTLFRENGSK---PRAIVVDPVHGFMYWT 219 (400)
T ss_dssp EEEEEETTTTEEEEEET------------------TTTEEEEECTTTCSE-EEEEECSSCC---EEEEEEETTTTEEEEE
T ss_pred ccEEEEecCCceEEEEC------------------CCCeEEEEeCCCCce-EEEEeCCCCC---cceEEEecccCeEEEE
Confidence 46777777888888732 234688777764432 2222222222 3478899998898876
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-ccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
.... ...|+.+++++.. ...+.. +.. ..-..++++++.||+.- ..+.+|.++++++..
T Consensus 220 d~~~---~~~I~~~~~dG~~--------------~~~~~~~~l~~P~glavd~~~~~lY~aD---~~~~~I~~~d~dG~~ 279 (400)
T 3p5b_L 220 DWGT---PAKIKKGGLNGVD--------------IYSLVTENIQWPNGITLDLLSGRLYWVD---SKLHSISSIDVNGGN 279 (400)
T ss_dssp ECSS---SCCEEEEETTSCS--------------CEEEECSSCSCEEEEEEETTTTEEEEEE---TTTTEEEEEETTSCC
T ss_pred eCCC---CCEEEEEeCCCCc--------------cEEEEECCCCceEEEEEEeCCCEEEEEE---CCCCEEEEEeCCCCc
Confidence 5321 3569999987631 122222 111 11234788889999863 345789999998765
Q ss_pred CeEEeccCC-CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecc
Q 003878 396 DWFEVIPEA-ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP 447 (789)
Q Consensus 396 ~~~~l~~~~-~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~ 447 (789)
.+.++... ....-.++++.. +.+|++-..+ .+|++++..+|+..+.|.
T Consensus 280 -~~~~~~~~~~l~~P~gl~v~~-~~lywtd~~~--~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 280 -RKTILEDEKRLAHPFSLAVFE-DKVFWTDIIN--EAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp -CEEEEECSSTTSSEEEEEEET-TEEEEEESSS--CSEEEEESSSCCCCEEEE
T ss_pred -cEEEEeCCCCCCCCEEEEEeC-CEEEEecCCC--CeEEEEEcCCCCceEEEe
Confidence 34444321 112334677766 7888766433 478888866676544443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.35 E-value=0.065 Score=58.33 Aligned_cols=201 Identities=11% Similarity=-0.002 Sum_probs=114.3
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCC--CCcEEEEecCCCCeeEEEEEEecCCcEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ--SEDILCWKDPEHPKYIFSGHVTEDGQYL 314 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~--~~~~~~~~~~~~~~~~~~~~~SpDG~~l 314 (789)
..+++|.+.+..||++-. ...+|++.++.... .....+.... .....++++.+.++.|
T Consensus 114 ~~~l~~d~~~~~lywsD~------------------~~~~I~~~~~~g~~~~~~~~~~~~~~--~~~p~glavD~~~~~l 173 (400)
T 3p5b_L 114 VVALDTEVASNRIYWSDL------------------SQRMICSTQLDRAHGVSSYDTVISRD--IQAPDGLAVDWIHSNI 173 (400)
T ss_dssp EEEEEEETTTTEEEEEET------------------TTTEEEEEEC------CCCEEEECSS--CSCEEEEEEETTTTEE
T ss_pred ceEEeeeeccCceEEEec------------------CCCeEEEEEcccCCCCCcceEEEeCC--CCCcccEEEEecCCce
Confidence 368999998889998732 23468888876422 1223333321 1123467888878888
Q ss_pred EEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-ccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECC
Q 003878 315 VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLK 392 (789)
Q Consensus 315 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~ 392 (789)
++.-.. ...|.++++++.. ...+.. ... ..--.+.|.+..||+.... .+.+|++++++
T Consensus 174 Y~~d~~----~~~I~~~~~~g~~--------------~~~l~~~~~~~P~~iavdp~~g~ly~td~~--~~~~I~~~~~d 233 (400)
T 3p5b_L 174 YWTDSV----LGTVSVADTKGVK--------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLN 233 (400)
T ss_dssp EEEETT----TTEEEEECTTTCS--------------EEEEEECSSCCEEEEEEETTTTEEEEEECS--SSCCEEEEETT
T ss_pred EEEECC----CCeEEEEeCCCCc--------------eEEEEeCCCCCcceEEEecccCeEEEEeCC--CCCEEEEEeCC
Confidence 776422 4578899887631 122222 221 1112367778888876432 24689999998
Q ss_pred CCCCeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceeeecc-cC--CeeEEEeecccCCcEEEEE
Q 003878 393 EPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP-IE--IGSVNAISARREDSVVFIS 468 (789)
Q Consensus 393 ~~~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~-~~--~~~v~~~s~s~d~~~l~~~ 468 (789)
+.. .+.++... -..-.+++++. ++.||++-.. ..+|++++++ |...+.+. .+ .....+++. +++.++++
T Consensus 234 G~~-~~~~~~~~-l~~P~glavd~~~~~lY~aD~~--~~~I~~~d~d-G~~~~~~~~~~~~l~~P~gl~v--~~~~lywt 306 (400)
T 3p5b_L 234 GVD-IYSLVTEN-IQWPNGITLDLLSGRLYWVDSK--LHSISSIDVN-GGNRKTILEDEKRLAHPFSLAV--FEDKVFWT 306 (400)
T ss_dssp SCS-CEEEECSS-CSCEEEEEEETTTTEEEEEETT--TTEEEEEETT-SCCCEEEEECSSTTSSEEEEEE--ETTEEEEE
T ss_pred CCc-cEEEEECC-CCceEEEEEEeCCCEEEEEECC--CCEEEEEeCC-CCccEEEEeCCCCCCCCEEEEE--eCCEEEEe
Confidence 765 34454433 23456788884 3677776433 3589999997 54323332 11 112223443 45566664
Q ss_pred EcCCCCCcEEEEEECCCCC
Q 003878 469 FTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 469 ~ss~~~P~~ly~~dl~tg~ 487 (789)
- ..-.+|+++|..+|+
T Consensus 307 d---~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 307 D---IINEAIFSANRLTGS 322 (400)
T ss_dssp E---SSSCSEEEEESSSCC
T ss_pred c---CCCCeEEEEEcCCCC
Confidence 3 334578888866664
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.11 Score=52.59 Aligned_cols=228 Identities=12% Similarity=0.031 Sum_probs=122.8
Q ss_pred ceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceeccc-ccccccccccCccceeeeeec
Q 003878 117 AKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADA-LSWVCFCFSHSFGYFFHLTIS 195 (789)
Q Consensus 117 ~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 195 (789)
.++.++...|..-.. .++++++.||++.|..+.+. ...|+.+|+. |+++... +.+.
T Consensus 13 y~~~~~~~~l~g~~~-~lSGla~~~~~~~L~aV~d~----~~~I~~ld~~-g~v~~~i~l~g~----------------- 69 (255)
T 3qqz_A 13 YHATIDGKEIAGITN-NISSLTWSAQSNTLFSTINK----PAAIVEMTTN-GDLIRTIPLDFV----------------- 69 (255)
T ss_dssp CEEEEEEEECTTCCS-CEEEEEEETTTTEEEEEEET----TEEEEEEETT-CCEEEEEECSSC-----------------
T ss_pred eEEEEeceECCCccc-CcceeEEeCCCCEEEEEECC----CCeEEEEeCC-CCEEEEEecCCC-----------------
Confidence 355566444432211 37899999999887655554 3579999998 6654311 1111
Q ss_pred cccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCccc
Q 003878 196 LLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYH 275 (789)
Q Consensus 196 ~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~ 275 (789)
.+..++++.+||+ ++++. .+..
T Consensus 70 ---------------------------------------~D~EGIa~~~~g~-~~vs~------------------E~~~ 91 (255)
T 3qqz_A 70 ---------------------------------------KDLETIEYIGDNQ-FVISD------------------ERDY 91 (255)
T ss_dssp ---------------------------------------SSEEEEEECSTTE-EEEEE------------------TTTT
T ss_pred ---------------------------------------CChHHeEEeCCCE-EEEEE------------------CCCC
Confidence 0347889988774 44442 1235
Q ss_pred EEEEEECCCCCC-CcEEEEecC----CCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCC
Q 003878 276 EFYYHFLGTKQS-EDILCWKDP----EHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLL 350 (789)
Q Consensus 276 ~i~~~~lg~~~~-~~~~~~~~~----~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 350 (789)
+++++.++.... ..+.....+ .....+.+++++|++++|++...+. ...||.++--.....+..+ . ..
T Consensus 92 ~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~---p~~i~~~~g~~~~~~l~i~-~---~~ 164 (255)
T 3qqz_A 92 AIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN---PIEVYKVNGLLSSNELHIS-K---DK 164 (255)
T ss_dssp EEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS---SEEEEEEESTTCSSCCEEE-E---CH
T ss_pred cEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC---CceEEEEcccccCCceeee-c---ch
Confidence 677777765432 111111111 1112256899999999998866543 3568888710000000000 0 00
Q ss_pred ccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC-CeEEeccCC-----CCceeeeEEEecCCEEEEEE
Q 003878 351 PFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-DWFEVIPEA-----ERDVLESATAVNLNQMIVSY 424 (789)
Q Consensus 351 ~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~-~~~~l~~~~-----~~~~i~~v~~~~~~~lv~~~ 424 (789)
.+.....-.+..-..+.|..++||+++... ..|+.+|.++.- ....|.+.. .-..-+++++.+++.+|++.
T Consensus 165 ~~~~~~~~~d~S~l~~dp~tg~lliLS~~s---~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs 241 (255)
T 3qqz_A 165 ALQRQFTLDDVSGAEFNQQKNTLLVLSHES---RALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS 241 (255)
T ss_dssp HHHHTCCSSCCCEEEEETTTTEEEEEETTT---TEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred hhccccccCCceeEEEcCCCCeEEEEECCC---CeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc
Confidence 000000011222234678778999998753 678888877542 122232211 01234789999877787764
Q ss_pred EeCCeEEEEEEECC
Q 003878 425 LSDVKYVLQIRDLK 438 (789)
Q Consensus 425 ~~~g~~~L~~~dl~ 438 (789)
..| .+|++...
T Consensus 242 E~n---~~y~f~~~ 252 (255)
T 3qqz_A 242 EPN---RFYRFTPQ 252 (255)
T ss_dssp TTT---EEEEEEC-
T ss_pred CCc---eEEEEEec
Confidence 433 78888765
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.002 Score=72.95 Aligned_cols=80 Identities=8% Similarity=0.009 Sum_probs=44.5
Q ss_pred EEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcc-cccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCC
Q 003878 304 SGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLE-GFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAP 382 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~ 382 (789)
++.+||||++++++.. . .+.+.++|+++.+.... .+.+. ......+..+.......|++|| .+|.....
T Consensus 281 Gv~~sPDGk~v~V~~~--~--s~~VsVid~~~~~~~~~~~l~~~--~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~l--- 350 (595)
T 1fwx_A 281 GCNMAPDKKHLCVAGK--L--SPTVTVLDVTRFDAVFYENADPR--SAVVAEPELGLGPLHTAFDGRG-NAYTSLFL--- 350 (595)
T ss_dssp CEEECTTSSEEEEECT--T--SSBEEEEEGGGHHHHHHSCCCGG--GGEEECCBCCSCEEEEEECTTS-EEEEEETT---
T ss_pred EEEEcCCCCEEEEeCC--C--CCeEEEEECcccccccccccCcc--cceEEEcCCCCCcceEEECCCC-eEEEEEec---
Confidence 5789999999987542 2 46799999885210000 00000 0011122223333445689999 66654433
Q ss_pred CceEEEEECCC
Q 003878 383 KYKIIRVDLKE 393 (789)
Q Consensus 383 ~~~L~~~dl~~ 393 (789)
..+|.++++++
T Consensus 351 dsqV~kwdi~~ 361 (595)
T 1fwx_A 351 DSQVVKWNIED 361 (595)
T ss_dssp TTEEEEEEHHH
T ss_pred CCcEEEEEhhH
Confidence 36788899865
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.017 Score=60.60 Aligned_cols=159 Identities=9% Similarity=0.046 Sum_probs=94.5
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-c-cccceeEEEecCCCEEEEEECC
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-D-GFDAQYEVIANDDTVFTFLTNK 379 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-~-~~~~~~~~~s~dG~~l~~~tn~ 379 (789)
..++.|+|||+ |++.... ...|+++|.+++. ...+. . ........++++|+ +++.+..
T Consensus 47 ~~~~~~~~~g~-l~~~~~~----~~~i~~~d~~~~~--------------~~~~~~~~~~~~~~i~~~~dg~-l~v~~~~ 106 (333)
T 2dg1_A 47 LEGLNFDRQGQ-LFLLDVF----EGNIFKINPETKE--------------IKRPFVSHKANPAAIKIHKDGR-LFVCYLG 106 (333)
T ss_dssp EEEEEECTTSC-EEEEETT----TCEEEEECTTTCC--------------EEEEEECSSSSEEEEEECTTSC-EEEEECT
T ss_pred ccCcEECCCCC-EEEEECC----CCEEEEEeCCCCc--------------EEEEeeCCCCCcceEEECCCCc-EEEEeCC
Confidence 46789999998 4443321 3579999987642 12221 1 11112234788886 4444432
Q ss_pred C-CCCceEEEEECCCCCCeEEecc-CCCCceeeeEEEecCCEEEEEEEeC----CeEEEEEEECCCCceeeecccCCeeE
Q 003878 380 D-APKYKIIRVDLKEPNDWFEVIP-EAERDVLESATAVNLNQMIVSYLSD----VKYVLQIRDLKNGSLLHQLPIEIGSV 453 (789)
Q Consensus 380 ~-~~~~~L~~~dl~~~~~~~~l~~-~~~~~~i~~v~~~~~~~lv~~~~~~----g~~~L~~~dl~tG~~~~~l~~~~~~v 453 (789)
+ .....|+++|.+++. .+.++. ......+.++.+++++.+++....+ ....|++++.++++. ..+.......
T Consensus 107 ~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~ 184 (333)
T 2dg1_A 107 DFKSTGGIFAATENGDN-LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQNISVA 184 (333)
T ss_dssp TSSSCCEEEEECTTSCS-CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-EEEEEEESSE
T ss_pred CCCCCceEEEEeCCCCE-EEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE-EEeecCCCcc
Confidence 1 122589999988775 443333 2223456778888867777765431 235899999875554 3332222234
Q ss_pred EEeecccCCcEEEEEEcCCCCCcEEEEEECCC
Q 003878 454 NAISARREDSVVFISFTSFLIPGIVYQCNLKT 485 (789)
Q Consensus 454 ~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~t 485 (789)
..+.++++++.++++-+. -..+++||+.+
T Consensus 185 ~~i~~~~dg~~l~v~~~~---~~~i~~~d~~~ 213 (333)
T 2dg1_A 185 NGIALSTDEKVLWVTETT---ANRLHRIALED 213 (333)
T ss_dssp EEEEECTTSSEEEEEEGG---GTEEEEEEECT
T ss_pred cceEECCCCCEEEEEeCC---CCeEEEEEecC
Confidence 567889999888775432 35899999864
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.2 Score=50.91 Aligned_cols=193 Identities=9% Similarity=-0.011 Sum_probs=104.3
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.++++.+||+ |+++.. ....|++++.. +. ...+..+.......++.++++|+.. +.
T Consensus 65 ~~i~~~~~g~-l~v~~~------------------~~~~v~~~d~~-g~---~~~~~~~~~~~~~~~i~~~~~g~l~-v~ 120 (300)
T 2qc5_A 65 MCLIVSSLGD-IWFTEN------------------GANKIGKLSKK-GG---FTEYPLPQPDSGPYGITEGLNGDIW-FT 120 (300)
T ss_dssp EEEEECTTSC-EEEEET------------------TTTEEEEECTT-SC---EEEEECSSTTCCEEEEEECSTTCEE-EE
T ss_pred eeEEECCCCC-EEEEec------------------CCCeEEEECCC-CC---eEEecCCCCCCCCccceECCCCCEE-EE
Confidence 5677888875 555432 12346666654 21 1223322112334577888998743 33
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND 396 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~ 396 (789)
.. . ...|+.++.+ +.. . ...+.... ......++++|+ +|+.... +..|++++. +++
T Consensus 121 ~~-~---~~~i~~~~~~-g~~-----------~-~~~~~~~~~~~~~i~~d~~g~-l~v~~~~---~~~i~~~~~-~g~- 177 (300)
T 2qc5_A 121 QL-N---GDRIGKLTAD-GTI-----------Y-EYDLPNKGSYPAFITLGSDNA-LWFTENQ---NNSIGRITN-TGK- 177 (300)
T ss_dssp ET-T---TTEEEEECTT-SCE-----------E-EEECSSTTCCEEEEEECTTSS-EEEEETT---TTEEEEECT-TCC-
T ss_pred cc-C---CCeEEEECCC-CCE-----------E-EccCCCCCCCceeEEECCCCC-EEEEecC---CCeEEEECC-CCc-
Confidence 31 1 3468888876 320 0 00111111 111223667787 6665432 357999998 444
Q ss_pred eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC--CeeEEEeecccCCcEEEEEEcCCCC
Q 003878 397 WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAISARREDSVVFISFTSFLI 474 (789)
Q Consensus 397 ~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~--~~~v~~~s~s~d~~~l~~~~ss~~~ 474 (789)
...+..........++.+.+++.+++.....+ .|++++. +|+. ..+..+ ...+..+..++++. ++++.. .
T Consensus 178 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~--~i~~~~~-~g~~-~~~~~~~~~~~~~~i~~d~~g~-l~v~~~---~ 249 (300)
T 2qc5_A 178 LEEYPLPTNAAAPVGITSGNDGALWFVEIMGN--KIGRITT-TGEI-SEYDIPTPNARPHAITAGKNSE-IWFTEW---G 249 (300)
T ss_dssp EEEEECSSTTCCEEEEEECTTSSEEEEETTTT--EEEEECT-TCCE-EEEECSSTTCCEEEEEECSTTC-EEEEET---T
T ss_pred EEEeeCCCCCCCcceEEECCCCCEEEEccCCC--EEEEEcC-CCcE-EEEECCCCCCCceEEEECCCCC-EEEecc---C
Confidence 33332222224466788877667777654433 6889998 4664 233222 34455677788876 666542 2
Q ss_pred CcEEEEEECCCC
Q 003878 475 PGIVYQCNLKTE 486 (789)
Q Consensus 475 P~~ly~~dl~tg 486 (789)
...++++|. ++
T Consensus 250 ~~~i~~~~~-~g 260 (300)
T 2qc5_A 250 ANQIGRITN-DN 260 (300)
T ss_dssp TTEEEEECT-TS
T ss_pred CCeEEEECC-CC
Confidence 568999998 45
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.022 Score=60.05 Aligned_cols=152 Identities=8% Similarity=-0.090 Sum_probs=93.4
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCC
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDA 381 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~ 381 (789)
..++.|+||++.+++.... ...|++++.+++. ..............++++|+. ++.+.
T Consensus 51 ~egp~~~~~~~~l~~~d~~----~~~i~~~d~~~~~--------------~~~~~~~~~v~~i~~~~dg~l-~v~~~--- 108 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNIL----ERELHELHLASGR--------------KTVHALPFMGSALAKISDSKQ-LIASD--- 108 (326)
T ss_dssp EEEEEEETTTTEEEEEEGG----GTEEEEEETTTTE--------------EEEEECSSCEEEEEEEETTEE-EEEET---
T ss_pred CcCCeEeCCCCEEEEEECC----CCEEEEEECCCCc--------------EEEEECCCcceEEEEeCCCeE-EEEEC---
Confidence 4578999998888776533 3569999988742 111111111122347888764 44442
Q ss_pred CCceEEEEECCCCCCeEEeccCC---CCceeeeEEEecCCEEEEEEEeC----CeEEEEEEECCCCceeeecccCCeeEE
Q 003878 382 PKYKIIRVDLKEPNDWFEVIPEA---ERDVLESATAVNLNQMIVSYLSD----VKYVLQIRDLKNGSLLHQLPIEIGSVN 454 (789)
Q Consensus 382 ~~~~L~~~dl~~~~~~~~l~~~~---~~~~i~~v~~~~~~~lv~~~~~~----g~~~L~~~dl~tG~~~~~l~~~~~~v~ 454 (789)
..|+++|.++++ .+.+.... ....+.++.+++++.+++..... ....|++++ + |+. +.+........
T Consensus 109 --~gl~~~d~~~g~-~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~-g~~-~~~~~~~~~~~ 182 (326)
T 2ghs_A 109 --DGLFLRDTATGV-LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-K-GKV-TKLFADISIPN 182 (326)
T ss_dssp --TEEEEEETTTCC-EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-T-TEE-EEEEEEESSEE
T ss_pred --CCEEEEECCCCc-EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-C-CcE-EEeeCCCcccC
Confidence 249999998776 55444321 12346778888867777765532 345899998 4 664 33322222344
Q ss_pred EeecccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 455 AISARREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 455 ~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
++.+++|++.++++-+. ...|+++++.
T Consensus 183 ~i~~s~dg~~lyv~~~~---~~~I~~~d~~ 209 (326)
T 2ghs_A 183 SICFSPDGTTGYFVDTK---VNRLMRVPLD 209 (326)
T ss_dssp EEEECTTSCEEEEEETT---TCEEEEEEBC
T ss_pred CeEEcCCCCEEEEEECC---CCEEEEEEcc
Confidence 67889999988775432 4689999975
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.013 Score=59.31 Aligned_cols=152 Identities=7% Similarity=-0.031 Sum_probs=82.6
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.+++++|||+ |+++.. ....|++++.++... . ..... ......++.+++||+ |++.
T Consensus 111 ~~i~~~~~g~-l~v~~~------------------~~~~i~~~~~~~~~~--~-~~~~~-~~~~p~~i~~~~~g~-l~v~ 166 (270)
T 1rwi_B 111 EGLAVDTQGA-VYVADR------------------GNNRVVKLAAGSKTQ--T-VLPFT-GLNDPDGVAVDNSGN-VYVT 166 (270)
T ss_dssp EEEEECTTCC-EEEEEG------------------GGTEEEEECTTCCSC--E-ECCCC-SCCSCCCEEECTTCC-EEEE
T ss_pred cceEECCCCC-EEEEEC------------------CCCEEEEEECCCcee--E-eeccc-cCCCceeEEEeCCCC-EEEE
Confidence 5788889886 655522 123577776544321 1 11111 111123578899998 5444
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND 396 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~ 396 (789)
... ...|++++.++.. .......+.. ..-..++++| .+|+.... +.+|.+++.++..
T Consensus 167 ~~~----~~~i~~~~~~~~~-------------~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~---~~~v~~~~~~~~~- 224 (270)
T 1rwi_B 167 DTD----NNRVVKLEAESNN-------------QVVLPFTDITAPWGIAVDEAG-TVYVTEHN---TNQVVKLLAGSTT- 224 (270)
T ss_dssp EGG----GTEEEEECTTTCC-------------EEECCCSSCCSEEEEEECTTC-CEEEEETT---TSCEEEECTTCSC-
T ss_pred ECC----CCEEEEEecCCCc-------------eEeecccCCCCceEEEECCCC-CEEEEECC---CCcEEEEcCCCCc-
Confidence 321 3568999877631 0000111111 1112367777 66765543 3579999987654
Q ss_pred eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC
Q 003878 397 WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 397 ~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~ 438 (789)
. ..++........++.+.+++.+++....++ +|.++++.
T Consensus 225 ~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~--~v~~~~~~ 263 (270)
T 1rwi_B 225 S-TVLPFTGLNTPLAVAVDSDRTVYVADRGND--RVVKLTSL 263 (270)
T ss_dssp C-EECCCCSCSCEEEEEECTTCCEEEEEGGGT--EEEEECCC
T ss_pred c-eeeccCCCCCceeEEECCCCCEEEEECCCC--EEEEEcCC
Confidence 2 223322223467788887667777665554 78888876
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.037 Score=60.44 Aligned_cols=39 Identities=18% Similarity=0.062 Sum_probs=25.6
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA 172 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~ 172 (789)
-..+..+|||=+|...-+..|+....|.++|.+|++++.
T Consensus 140 Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~~ 178 (462)
T 2ece_A 140 LHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPLG 178 (462)
T ss_dssp EEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEEE
T ss_pred ccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEEE
Confidence 345679999922222223334456789999999998764
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.13 Score=53.88 Aligned_cols=115 Identities=9% Similarity=0.012 Sum_probs=64.5
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-cccc-cee-EEEecCCCEEEEEEC
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-DGFD-AQY-EVIANDDTVFTFLTN 378 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-~~~~-~~~-~~~s~dG~~l~~~tn 378 (789)
..+++++||+..|++.... ...|.+++.+++. ....+. .... ..+ ..++| ..++....
T Consensus 198 p~gia~d~~~g~l~v~d~~----~~~I~~~~~~~G~-------------~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g 258 (329)
T 3fvz_A 198 PHSLALVPHLDQLCVADRE----NGRIQCFKTDTKE-------------FVREIKHASFGRNVFAISYIP--GFLFAVNG 258 (329)
T ss_dssp EEEEEEETTTTEEEEEETT----TTEEEEEETTTCC-------------EEEEECCTTTTTCEEEEEEET--TEEEEEEC
T ss_pred CcEEEEECCCCEEEEEECC----CCEEEEEECCCCc-------------EEEEEeccccCCCcceeeecC--CEEEEeCC
Confidence 3578999997777665422 4679999988542 011111 1111 111 22555 23333222
Q ss_pred C----CCCCceEEEEECCCCCCeEEeccC--CCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC
Q 003878 379 K----DAPKYKIIRVDLKEPNDWFEVIPE--AERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 379 ~----~~~~~~L~~~dl~~~~~~~~l~~~--~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~ 438 (789)
. +..+.+++++++.+++ ....+.. .......++++++++.+|++...++ +|++|+++
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~-~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~--~I~~~~~~ 321 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGE-IIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTN--TVWKFTLT 321 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCC-EEEEECCSSSCCSSEEEEEECTTSEEEEEESSSC--CEEEEEEE
T ss_pred CEEeccCCCcEEEEEEcCCCe-EEEEEcCCCCccCCeeEEEECCCCCEEEEECCCC--EEEEEeCC
Confidence 1 2234589999988876 3333321 1123456888888677777665554 78888876
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.2 Score=59.39 Aligned_cols=163 Identities=8% Similarity=0.009 Sum_probs=99.0
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.+++..+.++.||++-. ...+|++.++..... .+++..... .-.++++.|.+.+|+++
T Consensus 474 ~GLAvD~~~~~LY~tD~------------------~~~~I~v~~ldG~~~-~~l~~~~l~---~P~gIaVDp~~g~LYwt 531 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDS------------------VLGTVSVADTKGVKR-KTLFRENGS---KPRAIVVDPVHGFMYWT 531 (791)
T ss_dssp CEEEEETTTTEEEEEET------------------TTTEEEEEETTSSSE-EEEEECTTC---CEEEEEEETTTTEEEEE
T ss_pred ceeeeeecCCcEEEEec------------------CCCeEEEEeCCCCeE-EEEEeCCCC---CcceEEEecCCCCEEEe
Confidence 56788778889988732 234688888865432 233322222 23478899999999876
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-ccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
-... ...|+++++++.. ...+.. +.. ..-..+++.++.||+.- ..+.+|.++++++..
T Consensus 532 D~g~---~~~I~~~~~dG~~--------------~~~lv~~~l~~P~GLavD~~~~~LYwaD---~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 532 DWGT---PAKIKKGGLNGVD--------------IYSLVTENIQWPNGITLDLLSGRLYWVD---SKLHSISSIDVNGGN 591 (791)
T ss_dssp ECSS---SCEEEEEETTSCC--------------EEEEECSSCSCEEEEEEETTTTEEEEEE---TTTTEEEEEETTSCS
T ss_pred cCCC---CCeEEEEecCCCc--------------eEEEEeCCCCCceEEEEecCCCeEEEEe---CCCCcEEEEecCCCc
Confidence 5321 3679999987631 222222 211 11123677788899863 345789999998765
Q ss_pred CeEEeccCC-CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec
Q 003878 396 DWFEVIPEA-ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL 446 (789)
Q Consensus 396 ~~~~l~~~~-~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l 446 (789)
.+.++... ....-.+++++. ++||++-..+ ..|++++..+|+.+..|
T Consensus 592 -~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~--~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 592 -RKTILEDEKRLAHPFSLAVFE-DKVFWTDIIN--EAIFSANRLTGSDVNLL 639 (791)
T ss_dssp -CEEEEECTTTTSSEEEEEEET-TEEEEEETTT--TEEEEEETTTCCCCEEE
T ss_pred -eEEEecCCCccCCCCEEEEeC-CEEEEEECCC--CEEEEEeCCCCcceEEe
Confidence 34454321 112234677776 7888765444 47888987777654444
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0064 Score=67.21 Aligned_cols=169 Identities=10% Similarity=0.009 Sum_probs=97.9
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccE--eeec-cccce-eEEEecC-CCEEEEE
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFV--KLID-GFDAQ-YEVIAND-DTVFTFL 376 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~--~l~~-~~~~~-~~~~s~d-G~~l~~~ 376 (789)
+..++|||||++|++....+ .....|.++|+.++..+.. ....++. .... ..... ...|+|+ +..|+..
T Consensus 95 v~~l~~spdg~~lav~~~sg-s~d~~v~iwd~~~~~~~~~-----~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSS-EYGSIIAFFDVRTFSNEAK-----QQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp EEEEEECTTSCEEEEEEEET-TTEEEEEEEEHHHHHCTTC-----SSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred ccEEEEcCCCCEEEEEEecc-CCCceEEEEEccccccCCc-----CCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence 56789999999998743111 1256788898765200000 0001111 1111 11112 2348997 5555544
Q ss_pred ECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-------
Q 003878 377 TNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE------- 449 (789)
Q Consensus 377 tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~------- 449 (789)
+. ++.|..+|+.++........+ ...+..++|++++..+++...++ .|++||.+ ++....+..+
T Consensus 169 s~----Dg~v~iwD~~~~~~~~~~~~~--~~~v~~v~wspdg~~lasgs~dg--~v~iwd~~-~~~~~~~~~~~~~~~~~ 239 (434)
T 2oit_A 169 LA----DGSIAVLQVTETVKVCATLPS--TVAVTSVCWSPKGKQLAVGKQNG--TVVQYLPT-LQEKKVIPCPPFYESDH 239 (434)
T ss_dssp ET----TSCEEEEEESSSEEEEEEECG--GGCEEEEEECTTSSCEEEEETTS--CEEEECTT-CCEEEEECCCTTCCTTS
T ss_pred EC----CCeEEEEEcCCCcceeeccCC--CCceeEEEEcCCCCEEEEEcCCC--cEEEEccC-CcccccccCCcccCCCC
Confidence 33 356888998876422222222 24678899998777777777777 68899987 6554444433
Q ss_pred CeeEEEeecccCCcEEEEEEcCC----CCCcEEEEEECCCC
Q 003878 450 IGSVNAISARREDSVVFISFTSF----LIPGIVYQCNLKTE 486 (789)
Q Consensus 450 ~~~v~~~s~s~d~~~l~~~~ss~----~~P~~ly~~dl~tg 486 (789)
...+..+.+++++..++ .+++. ..++.++.|++.+.
T Consensus 240 ~~~v~~v~w~~~~~~l~-~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 240 PVRVLDVLWIGTYVFAI-VYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CEEEEEEEEEETTEEEE-EEEETTCCSSSCCEEEEEECCCT
T ss_pred ceeEEEEEEecCceEEE-EEccCCCccCCCCceEEEEeccC
Confidence 12566788887665443 44322 45667888888654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.29 Score=49.73 Aligned_cols=153 Identities=5% Similarity=0.003 Sum_probs=82.9
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.+++++|||+ |+++.. ....|++++... +....+..........++++++||+ +++.
T Consensus 124 ~~i~~~~~g~-l~v~~~------------------~~~~i~~~~~~g---~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~ 180 (286)
T 1q7f_A 124 RGVTVDNKGR-IIVVEC------------------KVMRVIIFDQNG---NVLHKFGCSKHLEFPNGVVVNDKQE-IFIS 180 (286)
T ss_dssp EEEEECTTSC-EEEEET------------------TTTEEEEECTTS---CEEEEEECTTTCSSEEEEEECSSSE-EEEE
T ss_pred eEEEEeCCCC-EEEEEC------------------CCCEEEEEcCCC---CEEEEeCCCCccCCcEEEEECCCCC-EEEE
Confidence 5788999986 655522 224577776432 2222333222222345789999998 4443
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc--cc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG--FD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 394 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~--~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~ 394 (789)
.. . ...|++++.++.. ...+... .. ..-..++++|+ +|+....+ +.+|.+++.++.
T Consensus 181 ~~-~---~~~i~~~~~~g~~--------------~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~--~~~i~~~~~~g~ 239 (286)
T 1q7f_A 181 DN-R---AHCVKVFNYEGQY--------------LRQIGGEGITNYPIGVGINSNGE-ILIADNHN--NFNLTIFTQDGQ 239 (286)
T ss_dssp EG-G---GTEEEEEETTCCE--------------EEEESCTTTSCSEEEEEECTTCC-EEEEECSS--SCEEEEECTTSC
T ss_pred EC-C---CCEEEEEcCCCCE--------------EEEEccCCccCCCcEEEECCCCC-EEEEeCCC--CEEEEEECCCCC
Confidence 32 1 4568999875420 1111111 11 11233778875 55544321 238999986543
Q ss_pred CCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC
Q 003878 395 NDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 395 ~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~ 438 (789)
. ...+..+.......++++.+++.++++ ..++ .|.+|+..
T Consensus 240 ~-~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~--~v~v~~~~ 279 (286)
T 1q7f_A 240 L-ISALESKVKHAQCFDVALMDDGSVVLA-SKDY--RLYIYRYV 279 (286)
T ss_dssp E-EEEEEESSCCSCEEEEEEETTTEEEEE-ETTT--EEEEEECS
T ss_pred E-EEEEcccCCCCcceeEEECCCCcEEEE-CCCC--eEEEEEcc
Confidence 2 333333332234567888887788877 4443 78888875
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.054 Score=55.27 Aligned_cols=155 Identities=10% Similarity=-0.092 Sum_probs=92.1
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCC
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDA 381 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~ 381 (789)
..++.+++|| .|++++... ..+.|.++|+++++ ....+.-+....-.-+..+|++||+++..
T Consensus 23 ~~Gl~~~~dg-~Lyvstg~~--~~s~v~~iD~~tg~-------------v~~~i~l~~~~fgeGi~~~g~~lyv~t~~-- 84 (266)
T 2iwa_A 23 TQGLVYAEND-TLFESTGLY--GRSSVRQVALQTGK-------------VENIHKMDDSYFGEGLTLLNEKLYQVVWL-- 84 (266)
T ss_dssp EEEEEECSTT-EEEEEECST--TTCEEEEEETTTCC-------------EEEEEECCTTCCEEEEEEETTEEEEEETT--
T ss_pred cccEEEeCCC-eEEEECCCC--CCCEEEEEECCCCC-------------EEEEEecCCCcceEEEEEeCCEEEEEEec--
Confidence 3578899996 666654322 24779999999863 11111111111112245568899988765
Q ss_pred CCceEEEEECCCCCCeEEeccCC-CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCC-----eeEEE
Q 003878 382 PKYKIIRVDLKEPNDWFEVIPEA-ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEI-----GSVNA 455 (789)
Q Consensus 382 ~~~~L~~~dl~~~~~~~~l~~~~-~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~-----~~v~~ 455 (789)
...+.++|.++.+.... ++.. +.. -+++..+ ++++++ ++..+|+++|.++.+..+.+.... .....
T Consensus 85 -~~~v~viD~~t~~v~~~-i~~g~~~g--~glt~Dg-~~l~vs---~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ne 156 (266)
T 2iwa_A 85 -KNIGFIYDRRTLSNIKN-FTHQMKDG--WGLATDG-KILYGS---DGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNE 156 (266)
T ss_dssp -CSEEEEEETTTTEEEEE-EECCSSSC--CEEEECS-SSEEEE---CSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred -CCEEEEEECCCCcEEEE-EECCCCCe--EEEEECC-CEEEEE---CCCCeEEEEECCCCcEEEEEEECCCCccccccee
Confidence 36799999988753333 3322 211 2344433 567654 245699999999887766665431 12334
Q ss_pred eecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 456 ISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 456 ~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+.+. ++ .++... ....++.++|+++++
T Consensus 157 le~~-dg-~lyvn~---~~~~~V~vID~~tg~ 183 (266)
T 2iwa_A 157 LEYI-NG-EVWANI---WQTDCIARISAKDGT 183 (266)
T ss_dssp EEEE-TT-EEEEEE---TTSSEEEEEETTTCC
T ss_pred EEEE-CC-EEEEec---CCCCeEEEEECCCCc
Confidence 4444 44 566432 235699999999996
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.14 Score=60.87 Aligned_cols=199 Identities=12% Similarity=0.024 Sum_probs=112.9
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCC--CCcEEEEe-cCCCCeeEEEEEEecCCcEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ--SEDILCWK-DPEHPKYIFSGHVTEDGQYL 314 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~--~~~~~~~~-~~~~~~~~~~~~~SpDG~~l 314 (789)
.+++|.+.+..||++.. ...+|++..+.... .....+.. ....+ .++++.+.++.|
T Consensus 427 ~gl~~d~~~~~lY~sD~------------------~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P---~GLAvD~~~~~L 485 (791)
T 3m0c_C 427 VALDTEVASNRIYWSDL------------------SQRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSNI 485 (791)
T ss_dssp EEEEEETTTTEEEEEET------------------TTTEEEEEEC--------CEEEECSSCSCC---CEEEEETTTTEE
T ss_pred EEEeecccCCeeEEeec------------------cceeEEEEeccCCCCCcceeEEEecCCCCc---ceeeeeecCCcE
Confidence 57888888888888732 23468888876421 12233333 22222 367888899988
Q ss_pred EEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-ccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECC
Q 003878 315 VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLK 392 (789)
Q Consensus 315 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~ 392 (789)
++.-.. ...|+++++++.. ...+.. ... ..-.++.|.++.||+.-.. ...+|.+++++
T Consensus 486 Y~tD~~----~~~I~v~~ldG~~--------------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~d 545 (791)
T 3m0c_C 486 YWTDSV----LGTVSVADTKGVK--------------RKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLN 545 (791)
T ss_dssp EEEETT----TTEEEEEETTSSS--------------EEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETT
T ss_pred EEEecC----CCeEEEEeCCCCe--------------EEEEEeCCCCCcceEEEecCCCCEEEecCC--CCCeEEEEecC
Confidence 876422 4679999987631 222222 221 1122367777888875432 23689999998
Q ss_pred CCCCeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceeeecccC---CeeEEEeecccCCcEEEEE
Q 003878 393 EPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE---IGSVNAISARREDSVVFIS 468 (789)
Q Consensus 393 ~~~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~---~~~v~~~s~s~d~~~l~~~ 468 (789)
+.. .+.++... -..-.++++.. +++||++-. +...|++++++ |...+.+... .....+++. +++.||++
T Consensus 546 G~~-~~~lv~~~-l~~P~GLavD~~~~~LYwaD~--~~~~I~~~d~d-G~~~~~v~~~~~~l~~P~glav--~~~~lYwt 618 (791)
T 3m0c_C 546 GVD-IYSLVTEN-IQWPNGITLDLLSGRLYWVDS--KLHSISSIDVN-GGNRKTILEDEKRLAHPFSLAV--FEDKVFWT 618 (791)
T ss_dssp SCC-EEEEECSS-CSCEEEEEEETTTTEEEEEET--TTTEEEEEETT-SCSCEEEEECTTTTSSEEEEEE--ETTEEEEE
T ss_pred CCc-eEEEEeCC-CCCceEEEEecCCCeEEEEeC--CCCcEEEEecC-CCceEEEecCCCccCCCCEEEE--eCCEEEEE
Confidence 765 44555433 23456788874 467777643 33589999997 5433333211 111123333 34556654
Q ss_pred EcCCCCCcEEEEEECCCCC
Q 003878 469 FTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 469 ~ss~~~P~~ly~~dl~tg~ 487 (789)
= ..-..|+++|..+|+
T Consensus 619 D---~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 619 D---IINEAIFSANRLTGS 634 (791)
T ss_dssp E---TTTTEEEEEETTTCC
T ss_pred E---CCCCEEEEEeCCCCc
Confidence 2 234677888766664
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.25 Score=50.18 Aligned_cols=187 Identities=12% Similarity=0.052 Sum_probs=98.7
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.+++..++|+ ++++.. ....|++++.. + ....+..+........+.++++|+ |++.
T Consensus 107 ~~i~~~~~g~-l~v~~~------------------~~~~i~~~~~~-g---~~~~~~~~~~~~~~~~i~~d~~g~-l~v~ 162 (300)
T 2qc5_A 107 YGITEGLNGD-IWFTQL------------------NGDRIGKLTAD-G---TIYEYDLPNKGSYPAFITLGSDNA-LWFT 162 (300)
T ss_dssp EEEEECSTTC-EEEEET------------------TTTEEEEECTT-S---CEEEEECSSTTCCEEEEEECTTSS-EEEE
T ss_pred ccceECCCCC-EEEEcc------------------CCCeEEEECCC-C---CEEEccCCCCCCCceeEEECCCCC-EEEE
Confidence 5677788875 555432 12346666654 2 122222221122345788899998 5544
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee--cccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI--DGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 394 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~--~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~ 394 (789)
.. . ...|++++. ++. ..... .... .....++++|. +|+.+.. ...|++++. ++
T Consensus 163 ~~-~---~~~i~~~~~-~g~--------------~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~---~~~i~~~~~-~g 218 (300)
T 2qc5_A 163 EN-Q---NNSIGRITN-TGK--------------LEEYPLPTNAAAPVGITSGNDGA-LWFVEIM---GNKIGRITT-TG 218 (300)
T ss_dssp ET-T---TTEEEEECT-TCC--------------EEEEECSSTTCCEEEEEECTTSS-EEEEETT---TTEEEEECT-TC
T ss_pred ec-C---CCeEEEECC-CCc--------------EEEeeCCCCCCCcceEEECCCCC-EEEEccC---CCEEEEEcC-CC
Confidence 32 1 356888887 321 11111 1111 11123566764 6665433 357999998 34
Q ss_pred CCeEEe-ccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC--CeeEEEeecccCCcEEEEEEcC
Q 003878 395 NDWFEV-IPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE--IGSVNAISARREDSVVFISFTS 471 (789)
Q Consensus 395 ~~~~~l-~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~--~~~v~~~s~s~d~~~l~~~~ss 471 (789)
. ...+ ++.. .....++.+.+++.+++....+ ..|.+++.+ |+. ..+..+ ...+..+..++++. ++++ +
T Consensus 219 ~-~~~~~~~~~-~~~~~~i~~d~~g~l~v~~~~~--~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~--~ 289 (300)
T 2qc5_A 219 E-ISEYDIPTP-NARPHAITAGKNSEIWFTEWGA--NQIGRITND-NTI-QEYQLQTENAEPHGITFGKDGS-VWFA--L 289 (300)
T ss_dssp C-EEEEECSST-TCCEEEEEECSTTCEEEEETTT--TEEEEECTT-SCE-EEEECCSTTCCCCCEEECTTSC-EEEE--C
T ss_pred c-EEEEECCCC-CCCceEEEECCCCCEEEeccCC--CeEEEECCC-CcE-EEEECCccCCccceeEeCCCCC-EEEE--c
Confidence 3 3333 2322 2445678887766777765433 378899984 654 333222 23344556667766 5554 2
Q ss_pred CCCCcEEEEEECC
Q 003878 472 FLIPGIVYQCNLK 484 (789)
Q Consensus 472 ~~~P~~ly~~dl~ 484 (789)
. . .++++|+.
T Consensus 290 ~-~--~i~~~~p~ 299 (300)
T 2qc5_A 290 K-C--KIGKLNLN 299 (300)
T ss_dssp S-S--EEEEEEEC
T ss_pred c-C--ceEEeCCC
Confidence 2 2 88888753
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.43 Score=52.11 Aligned_cols=206 Identities=12% Similarity=0.046 Sum_probs=105.9
Q ss_pred EE--eCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecC-------CCCeeEEEEEEecCCc
Q 003878 242 WT--HDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDP-------EHPKYIFSGHVTEDGQ 312 (789)
Q Consensus 242 ws--pDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~-------~~~~~~~~~~~SpDG~ 312 (789)
++ +|+++|+.. ..+..+|++.+..+...+..++-.-. -.-..-..+..+|||
T Consensus 89 ~~~~~~r~~l~v~------------------~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG- 149 (462)
T 2ece_A 89 GKPNIERRFLIVP------------------GLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA- 149 (462)
T ss_dssp CCTTCCSCEEEEE------------------BTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-
T ss_pred cCCCccCCEEEEc------------------cCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-
Confidence 37 899999876 33445699999887655443322110 000122346789999
Q ss_pred EEEEEEEcC--CCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc---ceeEE-EecCCCEEEEEECCC------
Q 003878 313 YLVMCIEEN--CDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD---AQYEV-IANDDTVFTFLTNKD------ 380 (789)
Q Consensus 313 ~l~~~~~~~--~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~-~s~dG~~l~~~tn~~------ 380 (789)
|+++.... ......+.++|.++.+ .......+.. ..|.+ |+|+++.++ .++-+
T Consensus 150 -i~Vs~~g~~~g~~~g~v~vlD~~T~~-------------v~~~~~~~~~~~~~~Yd~~~~p~~~~mv-sS~wg~p~~~~ 214 (462)
T 2ece_A 150 -IYISALGNEEGEGPGGILMLDHYSFE-------------PLGKWEIDRGDQYLAYDFWWNLPNEVLV-SSEWAVPNTIE 214 (462)
T ss_dssp -EEEEEEEETTSCSCCEEEEECTTTCC-------------EEEECCSBCTTCCCCCCEEEETTTTEEE-ECBCCCHHHHT
T ss_pred -EEEEcCCCcCCCCCCeEEEEECCCCe-------------EEEEEccCCCCccccceEEECCCCCEEE-EccCcCccccc
Confidence 55544332 1224679999998742 0111111111 12323 689998554 45411
Q ss_pred ----------CCCceEEEEECCCCCCeEEeccCCCCceeeeEEE--ecCCEEEEEEEe----CCeEEEEEEECCCCce--
Q 003878 381 ----------APKYKIIRVDLKEPNDWFEVIPEAERDVLESATA--VNLNQMIVSYLS----DVKYVLQIRDLKNGSL-- 442 (789)
Q Consensus 381 ----------~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~--~~~~~lv~~~~~----~g~~~L~~~dl~tG~~-- 442 (789)
....+|..+|+++++...++-...+...-..+.+ ++++..++...+ +-.+.|+++..+.|+.
T Consensus 215 ~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~ 294 (462)
T 2ece_A 215 DGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNA 294 (462)
T ss_dssp TCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEE
T ss_pred cccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeE
Confidence 1247899999987642223222211122233444 554443333333 1223555444333321
Q ss_pred eeecccC------------------CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 443 LHQLPIE------------------IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 443 ~~~l~~~------------------~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
.+.+..+ ......+..++|++.|+++-. ....|..||+.
T Consensus 295 ~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~ 351 (462)
T 2ece_A 295 EKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDIS 351 (462)
T ss_dssp EEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECS
T ss_pred EEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEec
Confidence 1111010 122345668899999887643 34789999975
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.23 Score=51.75 Aligned_cols=157 Identities=15% Similarity=0.129 Sum_probs=86.2
Q ss_pred EEEEEEec-CCcEEEEEEEcC-------------CCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEE
Q 003878 302 IFSGHVTE-DGQYLVMCIEEN-------------CDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVI 366 (789)
Q Consensus 302 ~~~~~~Sp-DG~~l~~~~~~~-------------~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~ 366 (789)
...+.+++ ||+ |++..... ......|+.++.+++. ...+..... ..-..+
T Consensus 128 p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~--------------~~~~~~~~~~p~gia~ 192 (322)
T 2fp8_A 128 LYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE--------------TTLLLKELHVPGGAEV 192 (322)
T ss_dssp EEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE--------------EEEEEEEESCCCEEEE
T ss_pred cceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCCE--------------EEEeccCCccCcceEE
Confidence 34678899 885 44443221 0123679999987642 111111111 112348
Q ss_pred ecCCCEEEEEECCCCCCceEEEEECCCCC--CeEEeccCCCCceeeeEEEecCCEEEEEEEe--------CCeEEEEEEE
Q 003878 367 ANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVSYLS--------DVKYVLQIRD 436 (789)
Q Consensus 367 s~dG~~l~~~tn~~~~~~~L~~~dl~~~~--~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~--------~g~~~L~~~d 436 (789)
++||+.||+... .+.+|+++++++.. ..+.+. ..+ . ..++.+.+++.+++.... .....|.+++
T Consensus 193 ~~dg~~lyv~d~---~~~~I~~~~~~~~~~~~~~~~~-~~~-g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d 266 (322)
T 2fp8_A 193 SADSSFVLVAEF---LSHQIVKYWLEGPKKGTAEVLV-KIP-N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFD 266 (322)
T ss_dssp CTTSSEEEEEEG---GGTEEEEEESSSTTTTCEEEEE-ECS-S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEEC
T ss_pred CCCCCEEEEEeC---CCCeEEEEECCCCcCCccceEE-eCC-C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEEC
Confidence 899998887543 24689999987632 233322 121 2 466778776677776654 2245789999
Q ss_pred CCCCceeeecccCCe----eEEEeecccCCcEEEEEEcCCCCCcEEEEEECCC
Q 003878 437 LKNGSLLHQLPIEIG----SVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 485 (789)
Q Consensus 437 l~tG~~~~~l~~~~~----~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~t 485 (789)
.+ |+..+.+..+.+ .+..+.. ++..|+++- .....|.+++++.
T Consensus 267 ~~-G~~~~~~~~~~g~~~~~~~~~~~--~~g~L~v~~---~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 267 EF-GNILEVIPLPPPFAGEHFEQIQE--HDGLLYIGT---LFHGSVGILVYDK 313 (322)
T ss_dssp TT-SCEEEEEECCTTTTTSCCCEEEE--ETTEEEEEC---SSCSEEEEEEC--
T ss_pred CC-CCEEEEEECCCCCccccceEEEE--eCCEEEEee---cCCCceEEEeccc
Confidence 86 776555554421 1222222 245566542 2345777777643
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.17 Score=55.55 Aligned_cols=121 Identities=12% Similarity=0.055 Sum_probs=64.1
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...++|++||+.||++.... ......++.............+ ..-.++. +++++|++.+|++
T Consensus 181 P~~ia~d~~G~~lyvad~~~--------------~~~~~~v~~~~~~g~~~~~~~l-~~~~~p~---giavdp~~g~lyv 242 (430)
T 3tc9_A 181 VRTICWTHEADSMIITNDQN--------------NNDRPNNYILTRESGFKVITEL-TKGQNCN---GAETHPINGELYF 242 (430)
T ss_dssp EEEEEECTTSSEEEEEECCS--------------CTTSEEEEEEEGGGTSCSEEEE-EECSSCC---CEEECTTTCCEEE
T ss_pred cceEEEeCCCCEEEEEeCCC--------------CcccceEEEEeCCCceeeeeee-ccCCCce---EEEEeCCCCEEEE
Confidence 36799999999888875421 0111234444332221111122 2222232 4678996556666
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE 393 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~ 393 (789)
.... ..+|+.++.+++. ...+.............++|+|++||+... .+.+|++++.++
T Consensus 243 ~d~~----~~~V~~~~~~~~~-----------~~~~~~~~~~~~P~gia~~pdG~~lyv~d~---~~~~I~~~~~d~ 301 (430)
T 3tc9_A 243 NSWN----AGQVFRYDFTTQE-----------TTPLFTIQDSGWEFHIQFHPSGNYAYIVVV---NQHYILRSDYDW 301 (430)
T ss_dssp EETT----TTEEEEEETTTTE-----------EEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEET
T ss_pred EECC----CCEEEEEECCCCc-----------EEEEEEcCCCCcceeEEEcCCCCEEEEEEC---CCCEEEEEeCCc
Confidence 5422 4679999987631 000111111111233458999998887643 346888887654
|
| >1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0039 Score=63.00 Aligned_cols=145 Identities=14% Similarity=0.070 Sum_probs=83.8
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCC-CCCH----------------HHHHHHHcCCeEE
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP-SFSV----------------SRTILMRHLGAVF 571 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~-~~~~----------------~~~~~l~~~G~~v 571 (789)
--+.+....| ..+-.|++..+. . ....|++|+++||||.+... .+.. ...+|. +-..+
T Consensus 22 Gy~~v~~~~~-~~lFywf~es~~-~-~~~~Pl~lwlnGGPGcSS~~~g~~~E~GP~~v~~~~~~l~~N~~sW~--~~anv 96 (255)
T 1whs_A 22 GYITVDEGAG-RSLFYLLQEAPE-D-AQPAPLVLWLNGGPGCSSVAYGASEELGAFRVKPRGAGLVLNEYRWN--KVANV 96 (255)
T ss_dssp EEEEEETTTT-EEEEEEEECCCG-G-GCSCCEEEEECCTTTBCTTTTHHHHTSSSEEECGGGCCEEECTTCGG--GTSEE
T ss_pred EEEECCCCCC-cEEEEEEEEecC-C-CCCCCEEEEECCCCchHHHHHHHHhccCCeEecCCCCeeeeCccccc--ccCCE
Confidence 3455655567 788777665442 2 35689999999999987654 2100 001222 24568
Q ss_pred EEEeecCCCCCChhHHhccc-ccCCcchHHHHHHHHHHHHH-cCCCCCCcEEEEeeChHHHHHHHHHHh----C-C-Cce
Q 003878 572 CIANIRGGGEYGEEWHKGGA-LAKKQNCFDDFISASEYLIS-AGYTQSRKLCIEGGSNGGLLVGACINQ----R-P-DLF 643 (789)
Q Consensus 572 ~~~~~RG~g~~g~~~~~~~~-~~~~~~~~~D~~~~~~~L~~-~~~~d~~~i~i~G~S~GG~l~~~~~~~----~-p-d~f 643 (789)
+.+|..-|.+|...-..... ......+.+|+...++...+ ......+++.|.|.|+||..+-.++.. . + =.+
T Consensus 97 lfiDqPvGtGfSy~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yi~GESYgG~yvp~la~~i~~~n~~~inL 176 (255)
T 1whs_A 97 LFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVINL 176 (255)
T ss_dssp EEECCSTTSTTCEESSGGGGGSCCHHHHHHHHHHHHHHHHHHCGGGTTCEEEEEEEETHHHHHHHHHHHHHHHTCSSCEE
T ss_pred EEEecCCCCccCCCcCccccccCCHHHHHHHHHHHHHHHHHhCHHhcCCCEEEEecCCccccHHHHHHHHHHcCCccccc
Confidence 88885434444321111110 01112334566555554333 333345689999999999887665532 1 1 357
Q ss_pred eEEEecCCccccccc
Q 003878 644 GCALAHVGVMDMLRY 658 (789)
Q Consensus 644 ~a~v~~~p~~d~~~~ 658 (789)
++++...|++|....
T Consensus 177 kGi~ign~~~d~~~~ 191 (255)
T 1whs_A 177 KGFMVGNGLIDDYHD 191 (255)
T ss_dssp EEEEEEEECCBHHHH
T ss_pred ceEEecCCccCHHHh
Confidence 999999999986543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.17 Score=51.09 Aligned_cols=155 Identities=13% Similarity=0.093 Sum_probs=92.9
Q ss_pred eeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCCEEEEEEC
Q 003878 300 KYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTN 378 (789)
Q Consensus 300 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~~l~~~tn 378 (789)
.+..++.++ |+ .|+.+..... .+.|.++|+++++ ....+.-+. ..+ .-+.++|++||+++.
T Consensus 43 ~ftqGL~~~-~~-~LyestG~~g--~S~v~~vD~~Tgk-------------v~~~~~l~~-~~FgeGit~~g~~ly~ltw 104 (262)
T 3nol_A 43 AFTEGFFYR-NG-YFYESTGLNG--RSSIRKVDIESGK-------------TLQQIELGK-RYFGEGISDWKDKIVGLTW 104 (262)
T ss_dssp CEEEEEEEE-TT-EEEEEEEETT--EEEEEEECTTTCC-------------EEEEEECCT-TCCEEEEEEETTEEEEEES
T ss_pred cccceEEEE-CC-EEEEECCCCC--CceEEEEECCCCc-------------EEEEEecCC-ccceeEEEEeCCEEEEEEe
Confidence 344577887 55 6776664433 5789999999863 111111111 111 124567899999877
Q ss_pred CCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-----CeeE
Q 003878 379 KDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-----IGSV 453 (789)
Q Consensus 379 ~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-----~~~v 453 (789)
++ ..++++|.++.+...++ +..... -+++... ++|+++ ++..+|+++|.++.+....++.. ...+
T Consensus 105 ~~---~~v~v~D~~t~~~~~ti-~~~~eG--~glt~dg-~~L~~S---dGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~l 174 (262)
T 3nol_A 105 KN---GLGFVWNIRNLRQVRSF-NYDGEG--WGLTHND-QYLIMS---DGTPVLRFLDPESLTPVRTITVTAHGEELPEL 174 (262)
T ss_dssp SS---SEEEEEETTTCCEEEEE-ECSSCC--CCEEECS-SCEEEC---CSSSEEEEECTTTCSEEEEEECEETTEECCCE
T ss_pred eC---CEEEEEECccCcEEEEE-ECCCCc--eEEecCC-CEEEEE---CCCCeEEEEcCCCCeEEEEEEeccCCcccccc
Confidence 53 68999999987733333 322111 1344333 556654 34568999999988876776553 1223
Q ss_pred EEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 454 NAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 454 ~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
..+.+. ++ .++.. .+ ....|+++|+++|+
T Consensus 175 NELe~~-~G-~lyan--~w-~~~~I~vIDp~tG~ 203 (262)
T 3nol_A 175 NELEWV-DG-EIFAN--VW-QTNKIVRIDPETGK 203 (262)
T ss_dssp EEEEEE-TT-EEEEE--ET-TSSEEEEECTTTCB
T ss_pred ceeEEE-CC-EEEEE--Ec-cCCeEEEEECCCCc
Confidence 334443 44 56643 22 35699999999996
|
| >1ivy_A Human protective protein; carboxypeptidase, serine carboxypeptidase, protective protei glycoprotein, zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP: c.69.1.5 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0029 Score=69.96 Aligned_cols=134 Identities=13% Similarity=0.118 Sum_probs=77.2
Q ss_pred EecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCH----------------HHHHHHHcCCeEEEEEee
Q 003878 513 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV----------------SRTILMRHLGAVFCIANI 576 (789)
Q Consensus 513 ~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~----------------~~~~~l~~~G~~v~~~~~ 576 (789)
++-.++ ..+-.|++.... . ....|++|++|||||.+....+.. .-..|. +-..++.+|.
T Consensus 26 v~v~~~-~~lfy~f~~s~~-~-~~~~Pl~lwlnGGPG~Ss~~g~~~e~GP~~~~~~~~~l~~n~~sw~--~~~~~lfiDq 100 (452)
T 1ivy_A 26 LKSSGS-KHLHYWFVESQK-D-PENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWN--LIANVLYLES 100 (452)
T ss_dssp EECSTT-EEEEEEEECCSS-C-GGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCGG--GSSEEEEECC
T ss_pred EeeCCC-CeEEEEEEEcCC-C-CCCCCEEEEECCCCcHHHHHHHHHhcCCcEEeCCCceeeeCCCccc--ccccEEEEec
Confidence 444567 788777664432 1 246799999999999764311000 001122 3457888885
Q ss_pred -cCCCCCChhHHhcccccCC---cchHHHHHHH-HHHHHHcCCCCCCcEEEEeeChHHHHHHHHHH----hCCCceeEEE
Q 003878 577 -RGGGEYGEEWHKGGALAKK---QNCFDDFISA-SEYLISAGYTQSRKLCIEGGSNGGLLVGACIN----QRPDLFGCAL 647 (789)
Q Consensus 577 -RG~g~~g~~~~~~~~~~~~---~~~~~D~~~~-~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~----~~pd~f~a~v 647 (789)
+|.| |... .. .... ....+|+... .+|+........+++.|.|.|+||..+-.++. ..+-.+++++
T Consensus 101 P~GtG-fS~~--~~--~~~~~~~~~~a~~~~~~l~~f~~~~p~~~~~~~~i~GeSYgG~y~p~la~~i~~~~~~~l~g~~ 175 (452)
T 1ivy_A 101 PAGVG-FSYS--DD--KFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLA 175 (452)
T ss_dssp STTST-TCEE--SS--CCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEE
T ss_pred CCCCC-cCCc--CC--CCCcCCcHHHHHHHHHHHHHHHHhcHHhcCCCEEEEeeccceeehHHHHHHHHhcCccccceEE
Confidence 5544 3321 11 1111 1233444443 44454432334578999999999995444333 3355789999
Q ss_pred ecCCccccc
Q 003878 648 AHVGVMDML 656 (789)
Q Consensus 648 ~~~p~~d~~ 656 (789)
+..|++|..
T Consensus 176 ign~~~d~~ 184 (452)
T 1ivy_A 176 VGNGLSSYE 184 (452)
T ss_dssp EESCCSBHH
T ss_pred ecCCccChh
Confidence 999988753
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.23 Score=49.73 Aligned_cols=150 Identities=16% Similarity=0.124 Sum_probs=80.0
Q ss_pred EEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcC
Q 003878 242 WTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEEN 321 (789)
Q Consensus 242 wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~ 321 (789)
-+++++.||.. .++...+++++..+...... +..+.+ +..+++||+.|+++. +
T Consensus 70 i~~~~~~ly~l------------------tw~~~~v~v~D~~tl~~~~t--i~~~~~-----Gwglt~dg~~L~vSd--g 122 (243)
T 3mbr_X 70 IVAWRDRLIQL------------------TWRNHEGFVYDLATLTPRAR--FRYPGE-----GWALTSDDSHLYMSD--G 122 (243)
T ss_dssp EEEETTEEEEE------------------ESSSSEEEEEETTTTEEEEE--EECSSC-----CCEEEECSSCEEEEC--S
T ss_pred EEEeCCEEEEE------------------EeeCCEEEEEECCcCcEEEE--EeCCCC-----ceEEeeCCCEEEEEC--C
Confidence 35567888876 34456789998876533222 222221 234568999887652 3
Q ss_pred CCCceEEEEEECCCCCCCcccccccCCCCccEeeec-cccce-eEEEecCCCEEEEEECCCCCCceEEEEECCCCCC--e
Q 003878 322 CDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND--W 397 (789)
Q Consensus 322 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~-~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~--~ 397 (789)
.+.|+++|.++... .....+.. +.... .......+..+|..... ...|.++|.++++- +
T Consensus 123 ---s~~l~~iDp~t~~~-----------~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~---s~~I~vIDp~tG~V~~~ 185 (243)
T 3mbr_X 123 ---TAVIRKLDPDTLQQ-----------VGSIKVTAGGRPLDNLNELEWVNGELLANVWL---TSRIARIDPASGKVVAW 185 (243)
T ss_dssp ---SSEEEEECTTTCCE-----------EEEEECEETTEECCCEEEEEEETTEEEEEETT---TTEEEEECTTTCBEEEE
T ss_pred ---CCeEEEEeCCCCeE-----------EEEEEEccCCcccccceeeEEeCCEEEEEECC---CCeEEEEECCCCCEEEE
Confidence 46799999887420 00111111 11000 01111123457744432 34899999998861 1
Q ss_pred EE---eccC------CCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEEC
Q 003878 398 FE---VIPE------AERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 398 ~~---l~~~------~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl 437 (789)
-. +.+. .....+.++++.++ ++|++.... -+.|+.+.+
T Consensus 186 idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~--wp~~~~v~~ 233 (243)
T 3mbr_X 186 IDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR--WPMLYEIRL 233 (243)
T ss_dssp EECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT--CSEEEEEEE
T ss_pred EECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC--CCcEEEEEE
Confidence 11 2221 12357889999974 566665433 246666554
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.87 Score=52.52 Aligned_cols=157 Identities=11% Similarity=0.053 Sum_probs=97.4
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.+++..+.++.||++-. ...+|.+.++..... .+++...-.. -.++++.|...+|+++
T Consensus 83 ~GlAvD~~~~~LY~tD~------------------~~~~I~v~~~dG~~~-~~l~~~~l~~---P~~iavdp~~G~lY~t 140 (628)
T 4a0p_A 83 EGMAVDWLGKNLYWADT------------------GTNRIEVSKLDGQHR-QVLVWKDLDS---PRALALDPAEGFMYWT 140 (628)
T ss_dssp CEEEEETTTTEEEEEET------------------TTTEEEEEETTSTTC-EEEECSSCCC---EEEEEEETTTTEEEEE
T ss_pred ceEEEEeCCCEEEEEEC------------------CCCEEEEEecCCCcE-EEEEeCCCCC---cccEEEccCCCeEEEe
Confidence 56777778889988732 234688888865432 2333222222 3478899988888876
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND 396 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~ 396 (789)
-.. ....|+.+++++.. ...+..+... .--.++++++.||+.-. ...+|.++++++..
T Consensus 141 D~g---~~~~I~r~~~dG~~--------------~~~l~~~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~- 199 (628)
T 4a0p_A 141 EWG---GKPKIDRAAMDGSE--------------RTTLVPNVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLN- 199 (628)
T ss_dssp ECS---SSCEEEEEETTSCS--------------CEEEECSCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS-
T ss_pred CCC---CCCEEEEEeCCCCc--------------eEEEECCCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCc-
Confidence 432 14679999987631 2223332211 11237788899998643 35789999998765
Q ss_pred eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce
Q 003878 397 WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 397 ~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
. +++.... ..-.+++++. +++|++-..++ .|+++|..+|+.
T Consensus 200 ~-~v~~~~l-~~P~glav~~-~~ly~tD~~~~--~I~~~dk~tg~~ 240 (628)
T 4a0p_A 200 R-EVIADDL-PHPFGLTQYQ-DYIYWTDWSRR--SIERANKTSGQN 240 (628)
T ss_dssp C-EEEEECC-SCEEEEEEET-TEEEEEETTTT--EEEEEETTTCCS
T ss_pred e-EEeeccC-CCceEEEEEC-CEEEEecCCCC--EEEEEECCCCCc
Confidence 2 3443332 2345788887 78887654443 788999877764
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.63 Score=47.74 Aligned_cols=195 Identities=10% Similarity=0.000 Sum_probs=97.4
Q ss_pred ccEEEEEECCCCCCC-cEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCcc
Q 003878 274 YHEFYYHFLGTKQSE-DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPF 352 (789)
Q Consensus 274 ~~~i~~~~lg~~~~~-~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 352 (789)
...++++++.+.... =..+...+. +....... .-+++..++.........++++++|+.+.. |
T Consensus 77 ~~~~~~~d~~~~~~~~W~~~~~~p~-~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~--------------W 140 (301)
T 2vpj_A 77 LSSVECLDYTADEDGVWYSVAPMNV-RRGLAGAT-TLGDMIYVSGGFDGSRRHTSMERYDPNIDQ--------------W 140 (301)
T ss_dssp CCCEEEEETTCCTTCCCEEECCCSS-CCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTTE--------------E
T ss_pred CceEEEEECCCCCCCeeEECCCCCC-CccceeEE-EECCEEEEEcccCCCcccceEEEEcCCCCe--------------E
Confidence 345888888765410 111211121 11111222 236655555433332235789999987732 3
Q ss_pred Eeeecc--ccceeEEEecCCCEEEEEECCCC--CCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCC
Q 003878 353 VKLIDG--FDAQYEVIANDDTVFTFLTNKDA--PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV 428 (789)
Q Consensus 353 ~~l~~~--~~~~~~~~s~dG~~l~~~tn~~~--~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g 428 (789)
..+... .......... ++.||+....+. ....++.+|+.+.. |+.+-+......-..+...+ +.+++..-.++
T Consensus 141 ~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~~-~~i~v~GG~~~ 217 (301)
T 2vpj_A 141 SMLGDMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKYDPHTGH-WTNVTPMATKRSGAGVALLN-DHIYVVGGFDG 217 (301)
T ss_dssp EEEEECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEET-TEEEEECCBCS
T ss_pred EECCCCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEEeCCCCc-EEeCCCCCcccccceEEEEC-CEEEEEeCCCC
Confidence 222110 0011122222 456777654322 24679999998876 88774332222223344444 78887765443
Q ss_pred ---eEEEEEEECCCCceeeecc-cC--CeeEEEeecccCCcEEEEEEcCCC---CCcEEEEEECCCCCceEEEee
Q 003878 429 ---KYVLQIRDLKNGSLLHQLP-IE--IGSVNAISARREDSVVFISFTSFL---IPGIVYQCNLKTETPEMKIFR 494 (789)
Q Consensus 429 ---~~~L~~~dl~tG~~~~~l~-~~--~~~v~~~s~s~d~~~l~~~~ss~~---~P~~ly~~dl~tg~~~~~~l~ 494 (789)
...++++|+++++. +.+. .| ........ .++ .+++. .+.. .-..++.||+.++ +.+.+.
T Consensus 218 ~~~~~~v~~yd~~~~~W-~~~~~~p~~r~~~~~~~--~~~-~i~v~-GG~~~~~~~~~v~~yd~~~~--~W~~~~ 285 (301)
T 2vpj_A 218 TAHLSSVEAYNIRTDSW-TTVTSMTTPRCYVGATV--LRG-RLYAI-AGYDGNSLLSSIECYDPIID--SWEVVT 285 (301)
T ss_dssp SSBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEE--ETT-EEEEE-CCBCSSSBEEEEEEEETTTT--EEEEEE
T ss_pred CcccceEEEEeCCCCcE-EECCCCCCcccceeEEE--ECC-EEEEE-cCcCCCcccccEEEEcCCCC--eEEEcC
Confidence 35799999987664 3433 22 21111122 133 34433 3322 2268899999887 466554
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.36 Score=53.01 Aligned_cols=70 Identities=13% Similarity=-0.085 Sum_probs=41.1
Q ss_pred EEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec--ccc-ceeEEEecCCCEEEEEECCC
Q 003878 304 SGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID--GFD-AQYEVIANDDTVFTFLTNKD 380 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~--~~~-~~~~~~s~dG~~l~~~tn~~ 380 (789)
+++++|++..|++... ....|+.++.+++.. ...+.. ... .....++|+|++||+...
T Consensus 232 giavd~~~G~lyv~d~----~~~~V~~~d~~~g~~-------------~~~~~~~~~~~~~~~ia~dpdG~~LYvad~-- 292 (433)
T 4hw6_A 232 TCAVHPQNGKIYYTRY----HHAMISSYDPATGTL-------------TEEEVMMDTKGSNFHIVWHPTGDWAYIIYN-- 292 (433)
T ss_dssp CCEECTTTCCEEECBT----TCSEEEEECTTTCCE-------------EEEEEECSCCSSCEEEEECTTSSEEEEEET--
T ss_pred EEEEeCCCCeEEEEEC----CCCEEEEEECCCCeE-------------EEEEeccCCCCCcccEEEeCCCCEEEEEeC--
Confidence 4678895556665432 246799999875420 011111 111 112458999998887643
Q ss_pred CCCceEEEEECCC
Q 003878 381 APKYKIIRVDLKE 393 (789)
Q Consensus 381 ~~~~~L~~~dl~~ 393 (789)
.+.+|++++.+.
T Consensus 293 -~~~~I~~~~~d~ 304 (433)
T 4hw6_A 293 -GKHCIYRVDYNR 304 (433)
T ss_dssp -TTTEEEEEEBCT
T ss_pred -CCCEEEEEeCCC
Confidence 357899988653
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=2.4 Score=48.76 Aligned_cols=196 Identities=10% Similarity=0.083 Sum_probs=117.0
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecC-CCCeeEEEEEEecCCcEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDP-EHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~-~~~~~~~~~~~SpDG~~l~~ 316 (789)
.+++|.+++..||++-. ...+|++.++..... ..+.... ..+ .++++.+.++.|++
T Consensus 40 ~~l~~d~~~~~lywtD~------------------~~~~I~r~~~~g~~~--~~v~~~g~~~P---~GlAvD~~~~~LY~ 96 (628)
T 4a0p_A 40 SALDFDVTDNRIYWTDI------------------SLKTISRAFMNGSAL--EHVVEFGLDYP---EGMAVDWLGKNLYW 96 (628)
T ss_dssp EEEEEETTTTEEEEEET------------------TTTEEEEEETTSCSC--EEEECSSCSCC---CEEEEETTTTEEEE
T ss_pred EEEEEECCCCEEEEEEC------------------CCCeEEEEECCCCCc--EEEEeCCCCCc---ceEEEEeCCCEEEE
Confidence 67899999999998732 234688888865432 2333321 122 36788888888887
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-ccccc-eeEEEecCCCEEEEEECCCCCCceEEEEECCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-DGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 394 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~ 394 (789)
.-.. ...|.++++++.. ...+. ..... .--.+.|.+..||+.-. + .+.+|+++++++.
T Consensus 97 tD~~----~~~I~v~~~dG~~--------------~~~l~~~~l~~P~~iavdp~~G~lY~tD~-g-~~~~I~r~~~dG~ 156 (628)
T 4a0p_A 97 ADTG----TNRIEVSKLDGQH--------------RQVLVWKDLDSPRALALDPAEGFMYWTEW-G-GKPKIDRAAMDGS 156 (628)
T ss_dssp EETT----TTEEEEEETTSTT--------------CEEEECSSCCCEEEEEEETTTTEEEEEEC-S-SSCEEEEEETTSC
T ss_pred EECC----CCEEEEEecCCCc--------------EEEEEeCCCCCcccEEEccCCCeEEEeCC-C-CCCEEEEEeCCCC
Confidence 6421 4679999987631 11222 22211 12236776778887543 2 3579999999876
Q ss_pred CCeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCC
Q 003878 395 NDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFL 473 (789)
Q Consensus 395 ~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~ 473 (789)
. .+.++... ..-.++++.. +++||+.-... ..|++++++ |...+.+........+++.. ++.++++= .
T Consensus 157 ~-~~~l~~~~--~~P~GlalD~~~~~LY~aD~~~--~~I~~~d~d-G~~~~v~~~~l~~P~glav~--~~~ly~tD---~ 225 (628)
T 4a0p_A 157 E-RTTLVPNV--GRANGLTIDYAKRRLYWTDLDT--NLIESSNML-GLNREVIADDLPHPFGLTQY--QDYIYWTD---W 225 (628)
T ss_dssp S-CEEEECSC--SSEEEEEEETTTTEEEEEETTT--TEEEEEETT-SCSCEEEEECCSCEEEEEEE--TTEEEEEE---T
T ss_pred c-eEEEECCC--CCcceEEEccccCEEEEEECCC--CEEEEEcCC-CCceEEeeccCCCceEEEEE--CCEEEEec---C
Confidence 5 45555422 3446788886 36777765433 489999997 44323332111122244443 45676643 3
Q ss_pred CCcEEEEEECCCCC
Q 003878 474 IPGIVYQCNLKTET 487 (789)
Q Consensus 474 ~P~~ly~~dl~tg~ 487 (789)
.-..|+++|..+|+
T Consensus 226 ~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 226 SRRSIERANKTSGQ 239 (628)
T ss_dssp TTTEEEEEETTTCC
T ss_pred CCCEEEEEECCCCC
Confidence 45689999987775
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.2 Score=52.91 Aligned_cols=148 Identities=8% Similarity=-0.049 Sum_probs=76.0
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccccee
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFF 213 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 213 (789)
+.++.++|++..+ |..+.+++....|+++|+++++... .+.....+ ... .....++++
T Consensus 122 ~~~v~vd~~~g~~-yvtd~~~~~~~~i~v~d~~~g~~~r-~~~~~~~~-~~~---------~~~~~~~g~---------- 179 (343)
T 2qe8_A 122 VNDLAVDLIHNFV-YISDPAPDDKAALIRVDLQTGLAAR-VLQGYPGI-APE---------DIDLVIDGV---------- 179 (343)
T ss_dssp CCEEEEETTTTEE-EEEECCSGGGCEEEEEETTTCCEEE-ECTTCTTT-SCC---------SCCCEETTE----------
T ss_pred cceEEEecCCCEE-EEEcCccCCCCeEEEEECCCCCEEE-EecCCCcc-ccc---------ccceeECCE----------
Confidence 4678899876654 5555433345689999999886533 11110000 000 000111221
Q ss_pred eEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCC---CC-C--
Q 003878 214 FFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT---KQ-S-- 287 (789)
Q Consensus 214 ~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~---~~-~-- 287 (789)
.+++.+.+|....|.. ...+++|||||+.||+.... ..++|+.+... .. .
T Consensus 180 --~~~~~~~~g~~~~~~~----~~~gia~s~dg~~ly~~~~~------------------~~~l~~~~~~~~~~~~~~~~ 235 (343)
T 2qe8_A 180 --PVQIGQPDGTVIRPHL----GVNGIVLDAENEWLYLSPMH------------------STSMYRIKSADLSNLQLTDA 235 (343)
T ss_dssp --ECBEECTTSCEECCCC----CEEEEEECTTSCEEEEEESS------------------CSEEEEEEHHHHTCTTCCHH
T ss_pred --EEEeccCCCceeceec----ccceeEeccCCCEEEEEeCC------------------CCeEEEEEHHHhcCCCCChh
Confidence 2233445565555532 23679999999999987432 23577765321 00 0
Q ss_pred ---CcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCC
Q 003878 288 ---EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 335 (789)
Q Consensus 288 ---~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~ 335 (789)
...........+ .++++++||. |++.... .+.|++++.++
T Consensus 236 ~~~~~~~~~g~~g~p---dgia~d~~G~-l~va~~~----~~~V~~~d~~~ 278 (343)
T 2qe8_A 236 ELGSKIERYSEKPIC---DGISIDKDHN-IYVGDLA----HSAIGVITSAD 278 (343)
T ss_dssp HHHTTCEEEEECCSC---SCEEECTTCC-EEEEEGG----GTEEEEEETTT
T ss_pred hhhcceEecccCCCC---ceEEECCCCC-EEEEccC----CCeEEEEECCC
Confidence 011111111111 2578899986 4333321 46799999844
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.01 Score=69.76 Aligned_cols=199 Identities=13% Similarity=0.057 Sum_probs=105.3
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCC---CCCcEEEEecCCCCeeEEEEEEecCCcEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTK---QSEDILCWKDPEHPKYIFSGHVTEDGQYL 314 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~---~~~~~~~~~~~~~~~~~~~~~~SpDG~~l 314 (789)
.+++|.+++..||++.. ...+|++.++.+. .....++......+ .++++.+.++.|
T Consensus 409 ~gla~d~~~~~Ly~sD~------------------~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P---~glavD~~~g~L 467 (699)
T 1n7d_A 409 VALDTEVASNRIYWSDL------------------SQRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSNI 467 (699)
T ss_dssp CCCEEETTTTEEEECCT------------------TTTSBEEEESCCCCC-CCCCCBCCSCC--C---CCEECCCSSSBC
T ss_pred EEEccccccCeEEEEec------------------CCCeEEEEecCCCCCCcceEEEEeCCCCCc---ceEEEEeeCCcE
Confidence 67899998888887622 2335777777641 11111111111112 246677667777
Q ss_pred EEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-cc-cceeEEEecCCCEEEEEECCCCCCceEEEEECC
Q 003878 315 VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLK 392 (789)
Q Consensus 315 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~ 392 (789)
++... ....|+++++++.. ...+.. +. ...-..++|+++.||+. +.+ ...+|++++++
T Consensus 468 Y~tD~----~~~~I~v~d~dg~~--------------~~~l~~~~~~~P~giavDp~~g~ly~t-d~~-~~~~I~~~~~d 527 (699)
T 1n7d_A 468 YWTDS----VLGTVSVADTKGVK--------------RKTLFREQGSKPRAIVVDPVHGFMYWT-DWG-TPAKIKKGGLN 527 (699)
T ss_dssp EECCT----TTSCEEEEBSSSCC--------------EEEECCCSSCCCCCEECCSSSSCCEEC-CCS-SSCCEEBCCSS
T ss_pred EEEec----cCCeEEEEecCCCc--------------eEEEEeCCCCCcceEEEccCCCcEEEc-ccC-CCCeEEEEeCC
Confidence 65421 13568888877531 112221 11 11123367777777764 322 23689999887
Q ss_pred CCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecc-cC--CeeEEEeecccCCcEEEEE
Q 003878 393 EPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLP-IE--IGSVNAISARREDSVVFIS 468 (789)
Q Consensus 393 ~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~-~~--~~~v~~~s~s~d~~~l~~~ 468 (789)
+.. .+.++... -..-.+++++++ ++||++-.. ..+|++++++ |...+.+. .. .....++++ +++.++++
T Consensus 528 G~~-~~~l~~~~-l~~PnGlavd~~~~~LY~aD~~--~~~I~~~d~d-G~~~~~~~~~~~~~~~P~glav--d~~~lywt 600 (699)
T 1n7d_A 528 GVD-IYSLVTEN-IQWPNGITLDLLSGRLYWVDSK--LHSISSIDVN-GGNRKTILEDEKRLAHPFSLAV--FEDKVFWT 600 (699)
T ss_dssp SCC-CCEESCSS-CSSCCCEEECTTTCCEEEEETT--TTEEEEECSS-SSCCEEECCCSSSCSSCCCCEE--ETTEEEEE
T ss_pred CCC-eeEEEeCC-CCCccEEEEeccCCEEEEEecC--CCeEEEEccC-CCceEEEEecCCcCCCceEeEE--ECCEEEEE
Confidence 654 33443322 123457888853 567765533 3589999997 43323332 11 111112222 44566654
Q ss_pred EcCCCCCcEEEEEECCCCC
Q 003878 469 FTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 469 ~ss~~~P~~ly~~dl~tg~ 487 (789)
- ..-.+|++++..+|+
T Consensus 601 d---~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 601 D---IINEAIFSANRLTGS 616 (699)
T ss_dssp C---STTTCEEEEETTTEE
T ss_pred e---CCCCeEEEEEccCCC
Confidence 3 334688999987774
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.017 Score=68.00 Aligned_cols=164 Identities=8% Similarity=0.039 Sum_probs=92.7
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEec-CCCCeeEEEEEEecCCcEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD-PEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~-~~~~~~~~~~~~SpDG~~l~~ 316 (789)
.++++.+.++.||++- ....+|++.++.+... ..+... ...+ .+++++|++.+|++
T Consensus 456 ~glavD~~~g~LY~tD------------------~~~~~I~v~d~dg~~~--~~l~~~~~~~P---~giavDp~~g~ly~ 512 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTD------------------SVLGTVSVADTKGVKR--KTLFREQGSKP---RAIVVDPVHGFMYW 512 (699)
T ss_dssp CCEECCCSSSBCEECC------------------TTTSCEEEEBSSSCCE--EEECCCSSCCC---CCEECCSSSSCCEE
T ss_pred ceEEEEeeCCcEEEEe------------------ccCCeEEEEecCCCce--EEEEeCCCCCc---ceEEEccCCCcEEE
Confidence 4567666677777652 1223477777654321 222221 1222 25688998888876
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-cccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-DGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 394 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~ 394 (789)
+... ....|+++++++.. ...+. .... ..-..+++++++||+.-. ...+|.++++++.
T Consensus 513 td~~---~~~~I~~~~~dG~~--------------~~~l~~~~l~~PnGlavd~~~~~LY~aD~---~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 513 TDWG---TPAKIKKGGLNGVD--------------IYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGG 572 (699)
T ss_dssp CCCS---SSCCEEBCCSSSCC--------------CCEESCSSCSSCCCEEECTTTCCEEEEET---TTTEEEEECSSSS
T ss_pred cccC---CCCeEEEEeCCCCC--------------eeEEEeCCCCCccEEEEeccCCEEEEEec---CCCeEEEEccCCC
Confidence 5421 12568888876521 11111 1111 112348888888987643 3578999999865
Q ss_pred CCeEEeccCC-CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc
Q 003878 395 NDWFEVIPEA-ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI 448 (789)
Q Consensus 395 ~~~~~l~~~~-~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~ 448 (789)
. .+.++... ....-.++++.. +.+|++.... .+|.+++..+|+.++.|..
T Consensus 573 ~-~~~~~~~~~~~~~P~glavd~-~~lywtd~~~--~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 573 N-RKTILEDEKRLAHPFSLAVFE-DKVFWTDIIN--EAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp C-CEEECCCSSSCSSCCCCEEET-TEEEEECSTT--TCEEEEETTTEEEEECCCT
T ss_pred c-eEEEEecCCcCCCceEeEEEC-CEEEEEeCCC--CeEEEEEccCCCceEEeec
Confidence 4 34454321 112234667776 6777766433 4788999877876555543
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.05 E-value=1.1 Score=49.83 Aligned_cols=131 Identities=15% Similarity=0.034 Sum_probs=67.8
Q ss_pred ceEEE-------EeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCC--CCC--Cc-EEEEecCCCCeeEEEE
Q 003878 238 SSIAW-------THDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT--KQS--ED-ILCWKDPEHPKYIFSG 305 (789)
Q Consensus 238 ~~~~w-------spDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~--~~~--~~-~~~~~~~~~~~~~~~~ 305 (789)
..++| ++||++||+....... ......+++.+... .-. .+ ..+-.. .++. ++
T Consensus 189 ~~ia~~~~~~~~d~~G~~lyvad~~~~~------------~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~---gi 252 (496)
T 3kya_A 189 RSIAFNKKIEGYADEAEYMIVAIDYDGK------------GDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCN---GA 252 (496)
T ss_dssp EEEEECCCBTTTBCTTCEEEEEECCCTT------------GGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCC---CE
T ss_pred cEEEEeecccccCCCCCEEEEEeCCCCC------------cccCceEEEEecCCCCceeecccceeeccC-CCce---EE
Confidence 57899 9999988877432100 01233466665433 111 11 222221 2232 46
Q ss_pred EEecCCcEEEEEEEcCCCCceEEEEEECC-------CCCCCcccccccCCCCccEeeec---cccceeEEEecCCCEEEE
Q 003878 306 HVTEDGQYLVMCIEENCDPVNKVYYCDLS-------ALPEGLEGFKKRDGLLPFVKLID---GFDAQYEVIANDDTVFTF 375 (789)
Q Consensus 306 ~~SpDG~~l~~~~~~~~~~~~~i~~~d~~-------~g~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~s~dG~~l~~ 375 (789)
+.+|++++|++.... ...|+.+|++ ++... ....+.... ....+.. ........++|+|+.||+
T Consensus 253 avdp~~g~LYvtd~~----~g~V~r~d~~~~~~~~~tg~~~-tp~~~~~~g-~~~~l~~~~~~~~p~~ia~~p~G~~lYv 326 (496)
T 3kya_A 253 TIHPINGELYFNSYE----KGQVFRLDLVDYFKTIKNGGSW-DPIVKNNPN-TFKQLFTIADPSWEFQIFIHPTGKYAYF 326 (496)
T ss_dssp EECTTTCCEEEEETT----TTEEEEECHHHHHHHHHTTCCC-CCBGGGCTT-TEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred EEcCCCCeEEEEECC----CCEEEEEecccccccccCceee-ccccccccc-ccceeEecCCCCCceEEEEcCCCCEEEE
Confidence 789988888876543 3569999987 43210 000000000 0112211 111233558999998887
Q ss_pred EECCCCCCceEEEEECCC
Q 003878 376 LTNKDAPKYKIIRVDLKE 393 (789)
Q Consensus 376 ~tn~~~~~~~L~~~dl~~ 393 (789)
.- ..+.+|++++.+.
T Consensus 327 aD---~~~h~I~kid~dg 341 (496)
T 3kya_A 327 GV---INNHYFMRSDYDE 341 (496)
T ss_dssp EE---TTTTEEEEEEEET
T ss_pred Ee---CCCCEEEEEecCC
Confidence 54 2457899977644
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.4 Score=49.03 Aligned_cols=179 Identities=12% Similarity=0.043 Sum_probs=95.5
Q ss_pred ccEEEEEECCCCCCCcEEEEecCCCC-eeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCcc
Q 003878 274 YHEFYYHFLGTKQSEDILCWKDPEHP-KYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPF 352 (789)
Q Consensus 274 ~~~i~~~~lg~~~~~~~~~~~~~~~~-~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~ 352 (789)
...|+.++..++. .++.-+.+. .....+.++|||+.++ +. ...|+.+|. +++ ..|
T Consensus 14 ~~~v~~~d~~tG~----~~w~~~~~~~~~~~~~~~~pdG~ilv--s~-----~~~V~~~d~-~G~------------~~W 69 (276)
T 3no2_A 14 WNKIAIINKDTKE----IVWEYPLEKGWECNSVAATKAGEILF--SY-----SKGAKMITR-DGR------------ELW 69 (276)
T ss_dssp CSEEEEEETTTTE----EEEEEECCTTCCCCEEEECTTSCEEE--EC-----BSEEEEECT-TSC------------EEE
T ss_pred CCEEEEEECCCCe----EEEEeCCCccCCCcCeEECCCCCEEE--eC-----CCCEEEECC-CCC------------EEE
Confidence 3457777765542 233222111 1123678899999776 22 345888888 432 112
Q ss_pred Eeeecc-ccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCC---CCceeeeEEEecCCEEEEEEEeCC
Q 003878 353 VKLIDG-FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA---ERDVLESATAVNLNQMIVSYLSDV 428 (789)
Q Consensus 353 ~~l~~~-~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~---~~~~i~~v~~~~~~~lv~~~~~~g 428 (789)
..-... .......+.+||+.++..+. .+.+|+.++.++...|+.-+... .......+.+.+++.++++...++
T Consensus 70 ~~~~~~~~~~~~~~~~~dG~~lv~~~~---~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~ 146 (276)
T 3no2_A 70 NIAAPAGCEMQTARILPDGNALVAWCG---HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATS 146 (276)
T ss_dssp EEECCTTCEEEEEEECTTSCEEEEEES---TTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred EEcCCCCccccccEECCCCCEEEEecC---CCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCC
Confidence 211110 11112346789987775443 14688888864432222211111 111223445566566666655554
Q ss_pred eEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 429 KYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 429 ~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.|+.+|.+ |+.+..+..+.. ...+...++++.++.... ..+++.+|..+|+
T Consensus 147 --~v~~~d~~-G~~~w~~~~~~~-~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~ 197 (276)
T 3no2_A 147 --EVREIAPN-GQLLNSVKLSGT-PFSSAFLDNGDCLVACGD----AHCFVQLNLESNR 197 (276)
T ss_dssp --EEEEECTT-SCEEEEEECSSC-CCEEEECTTSCEEEECBT----TSEEEEECTTTCC
T ss_pred --EEEEECCC-CCEEEEEECCCC-ccceeEcCCCCEEEEeCC----CCeEEEEeCcCCc
Confidence 79999998 887666554321 112344567775554322 3589999999886
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.64 Score=53.52 Aligned_cols=199 Identities=11% Similarity=0.029 Sum_probs=113.0
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.+++|++++..||++-. ...+|++..+.+.... ..+....- ....++++.+.++.|++.
T Consensus 43 ~~ld~~~~~~~ly~sD~------------------~~~~I~r~~~~g~~~~-~~v~~~~~--~~P~GlAvD~~~~~ly~~ 101 (619)
T 3s94_A 43 AAVDFVFSHGLIYWSDV------------------SEEAIKRTEFNKTESV-QNVVVSGL--LSPDGLACDWLGEKLYWT 101 (619)
T ss_dssp EEEEEETTTTEEEEEET------------------TTTEEEEEEC-----C-EEEECSSC--SCEEEEEEETTTTEEEEE
T ss_pred EEEEEEeCCCEEEEEEC------------------CCCeEEEEEccCCCce-EEEEeCCC--CCcCeEEEEecCCEEEEE
Confidence 57899998999988732 2346888887654221 23333221 123578899988888776
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-cccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-DGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
-.. ...|.++++++.. ...+. .... ..--.+.|.+..||+.... .+.+|.+.++++..
T Consensus 102 d~~----~~~I~v~~~dG~~--------------~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~ 161 (619)
T 3s94_A 102 DSE----TNRIEVSNLDGSL--------------RKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSS 161 (619)
T ss_dssp ETT----TTEEEEEETTSCS--------------CEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCS
T ss_pred eCC----CCEEEEEECCCCC--------------EEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCc
Confidence 422 4679999987631 11222 1111 1123467777788876432 35789999998765
Q ss_pred CeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceeeeccc-CCeeEEEeecccCCcEEEEEEcCCC
Q 003878 396 DWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI-EIGSVNAISARREDSVVFISFTSFL 473 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~-~~~~v~~~s~s~d~~~l~~~~ss~~ 473 (789)
.+.++... -..-.++++.. +++||+.-.. ...|++++++ |...+.+.. ......+++. +++.++++ . .
T Consensus 162 -~~~l~~~~-~~~P~Glald~~~~~LY~aD~~--~~~I~~~~~d-G~~~~~~~~~~~~~P~gi~~--~~~~ly~t--d-~ 231 (619)
T 3s94_A 162 -RFIIINSE-IYWPNGLTLDYEEQKLYWADAK--LNFIHKSNLD-GTNRQAVVKGSLPHPFALTL--FEDILYWT--D-W 231 (619)
T ss_dssp -CEEEECSS-CSSEEEEEEETTTTEEEEEETT--TCCEEEESSS-CCEEC---------CCCEEE--SSSEEEEE--C-T
T ss_pred -eEEEEeCC-CCCCcEEEEEccCCEEEEEeCC--CCeEEEecCC-CCccEEEEeCCCCCceEEEE--eCCEEEEe--c-C
Confidence 45555433 23446788885 3678776433 3589999997 544333321 1111112333 34456654 2 2
Q ss_pred CCcEEEEEECCCCC
Q 003878 474 IPGIVYQCNLKTET 487 (789)
Q Consensus 474 ~P~~ly~~dl~tg~ 487 (789)
.-..|.++|..+++
T Consensus 232 ~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 232 STHSILACNKYTGE 245 (619)
T ss_dssp TTCSEEEEESSSCC
T ss_pred CCCEEEEEECCCCc
Confidence 34688999987775
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.66 Score=46.88 Aligned_cols=151 Identities=13% Similarity=0.074 Sum_probs=91.1
Q ss_pred eEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCCEEEEEECC
Q 003878 301 YIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNK 379 (789)
Q Consensus 301 ~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~~l~~~tn~ 379 (789)
+..++.++ ++.|+++... ...|..+|+++++ ....+.... .+ .-+..+|++||+++.+
T Consensus 56 ftqGL~~~--~~~Ly~stG~----~g~v~~iD~~Tgk-------------v~~~~l~~~--~FgeGit~~g~~Ly~ltw~ 114 (268)
T 3nok_A 56 FTQGLVFH--QGHFFESTGH----QGTLRQLSLESAQ-------------PVWMERLGN--IFAEGLASDGERLYQLTWT 114 (268)
T ss_dssp CEEEEEEE--TTEEEEEETT----TTEEEECCSSCSS-------------CSEEEECTT--CCEEEEEECSSCEEEEESS
T ss_pred ccceEEEE--CCEEEEEcCC----CCEEEEEECCCCc-------------EEeEECCCC--cceeEEEEeCCEEEEEEcc
Confidence 34566665 5777776533 2338999999863 122222211 11 1256688999998765
Q ss_pred CCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-----CeeEE
Q 003878 380 DAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-----IGSVN 454 (789)
Q Consensus 380 ~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-----~~~v~ 454 (789)
+ ..++++|.++.+...++ +..... -+++... ++|+++ ++..+|+++|.++.+..+.+... ...+.
T Consensus 115 ~---~~v~V~D~~Tl~~~~ti-~~~~eG--wGLt~Dg-~~L~vS---dGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lN 184 (268)
T 3nok_A 115 E---GLLFTWSGMPPQRERTT-RYSGEG--WGLCYWN-GKLVRS---DGGTMLTFHEPDGFALVGAVQVKLRGQPVELIN 184 (268)
T ss_dssp S---CEEEEEETTTTEEEEEE-ECSSCC--CCEEEET-TEEEEE---CSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred C---CEEEEEECCcCcEEEEE-eCCCce--eEEecCC-CEEEEE---CCCCEEEEEcCCCCeEEEEEEeCCCCccccccc
Confidence 3 68999999887633333 222111 2455444 667664 35669999999988876766553 11233
Q ss_pred EeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 455 AISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 455 ~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.+.+. ++ .++.. .+ .-..|.++|+++|+
T Consensus 185 eLe~~-dG-~lyan--vw-~s~~I~vIDp~TG~ 212 (268)
T 3nok_A 185 ELECA-NG-VIYAN--IW-HSSDVLEIDPATGT 212 (268)
T ss_dssp EEEEE-TT-EEEEE--ET-TCSEEEEECTTTCB
T ss_pred ccEEe-CC-EEEEE--EC-CCCeEEEEeCCCCc
Confidence 34443 45 56643 33 34599999999996
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=95.79 E-value=0.33 Score=49.75 Aligned_cols=118 Identities=8% Similarity=-0.019 Sum_probs=65.2
Q ss_pred ceEEEE----eCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECC-CCCCCc-EEEEecCCCC-eeEEEEEEecC
Q 003878 238 SSIAWT----HDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLG-TKQSED-ILCWKDPEHP-KYIFSGHVTED 310 (789)
Q Consensus 238 ~~~~ws----pDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg-~~~~~~-~~~~~~~~~~-~~~~~~~~SpD 310 (789)
.+++|+ |||+.|+++.. ....|+++++. ++.... ..+...+... ....++.+++|
T Consensus 175 ~~i~~~~~~d~dg~~l~v~~~------------------~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~ 236 (314)
T 1pjx_A 175 NGIAVRHMNDGRPYQLIVAET------------------PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED 236 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEET------------------TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT
T ss_pred ceEEEecccCCCCCEEEEEEC------------------CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCC
Confidence 578999 99988887632 12457777654 211111 1222222221 33457889999
Q ss_pred CcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc-ccceeEEEecCCCEEEEEECCCCCCceEEEE
Q 003878 311 GQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FDAQYEVIANDDTVFTFLTNKDAPKYKIIRV 389 (789)
Q Consensus 311 G~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~ 389 (789)
|+..+ .... ...|++++.+++. ....+... ....-..++++|+.||+.+.. +..|+++
T Consensus 237 G~l~v-~~~~----~~~i~~~d~~~g~-------------~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~---~~~l~~~ 295 (314)
T 1pjx_A 237 NNLLV-ANWG----SSHIEVFGPDGGQ-------------PKMRIRCPFEKPSNLHFKPQTKTIFVTEHE---NNAVWKF 295 (314)
T ss_dssp CCEEE-EEET----TTEEEEECTTCBS-------------CSEEEECSSSCEEEEEECTTSSEEEEEETT---TTEEEEE
T ss_pred CCEEE-EEcC----CCEEEEEcCCCCc-------------EeEEEeCCCCCceeEEECCCCCEEEEEeCC---CCeEEEE
Confidence 96443 3321 3468889887532 01111111 111123368899988887654 3579999
Q ss_pred ECCCC
Q 003878 390 DLKEP 394 (789)
Q Consensus 390 dl~~~ 394 (789)
+++..
T Consensus 296 ~~~~~ 300 (314)
T 1pjx_A 296 EWQRN 300 (314)
T ss_dssp ECSSC
T ss_pred eCCCC
Confidence 88654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 789 | ||||
| d1qfma1 | 430 | b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-termin | 2e-91 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 6e-43 | |
| d1mpxa2 | 381 | c.69.1.21 (A:24-404) Alpha-amino acid ester hydrol | 1e-15 | |
| d1xfda2 | 258 | c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-li | 3e-13 | |
| d1sfra_ | 288 | c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculo | 5e-13 | |
| d2b9va2 | 385 | c.69.1.21 (A:50-434) Alpha-amino acid ester hydrol | 1e-12 | |
| d1vlqa_ | 322 | c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Therm | 8e-10 | |
| d2bgra2 | 258 | c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26 | 9e-10 | |
| d2hu7a2 | 260 | c.69.1.33 (A:322-581) Acylamino-acid-releasing enz | 2e-08 | |
| d1r88a_ | 267 | c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tu | 2e-07 | |
| d1dqza_ | 280 | c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculo | 5e-07 | |
| d2d81a1 | 318 | c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymer | 2e-05 | |
| d2gzsa1 | 265 | c.69.1.38 (A:41-305) Enterobactin and salmochelin | 0.002 |
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 430 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 291 bits (746), Expect = 2e-91
Identities = 203/493 (41%), Positives = 282/493 (57%), Gaps = 68/493 (13%)
Query: 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDK 69
S QYP RDE+ + DYHG K+ DPY WLEDPD+E+ K FV+ Q ++T L+ C +R
Sbjct: 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGL 62
Query: 70 LREKITKLFDSPRYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDD 129
+E++T+L+D P+Y FK+G +YFYF+NTGLQ Q VLYVQDSL+ +A+V LDPN LSDD
Sbjct: 63 YKERMTELYDYPKYSCHFKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDD 122
Query: 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYF 189
GT AL + SED +Y AY LS SGSDW TIK M+++ D L V F
Sbjct: 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSC------- 175
Query: 190 FHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGF 249
+ FY
Sbjct: 176 ---------------MAWTHDGKGMFY--------------------------------- 187
Query: 250 FYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTE 309
+ YP D GTET +NL+ + YYH LGT QSEDILC + P+ PK++ +++
Sbjct: 188 --NAYPQQDGKSD---GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD 242
Query: 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND 369
DG+Y+++ I E CDPVN+++YCDL G+ G L +VKLID F+ +Y+ + N+
Sbjct: 243 DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI------LKWVKLIDNFEGEYDYVTNE 296
Query: 370 DTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERDVLESATAVNLNQMIVSYLSD 427
TVFTF TN+ +P Y++I +D +P W ++PE E+DVLE V N +++ YL D
Sbjct: 297 GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356
Query: 428 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487
VK LQ+ DL G+LL P+E+GSV S +++D+ +F FTSFL PGI+Y C+L E
Sbjct: 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416
Query: 488 PEMKIFRETIIPG 500
E ++FRE + G
Sbjct: 417 LEPRVFREVTVKG 429
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 155 bits (391), Expect = 6e-43
Identities = 180/287 (62%), Positives = 219/287 (76%), Gaps = 8/287 (2%)
Query: 502 DRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRT 561
D S++ Q+F PSKDG TKIPMFIV KK IKLDGSHP LYGYGGFNIS+TP++SVSR
Sbjct: 1 DASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRL 59
Query: 562 ILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLC 621
I +RH+G V +ANIRGGGEYGE WHKGG LA KQNCFDDF A+EYLI GYT ++L
Sbjct: 60 IFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLT 119
Query: 622 IEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFY 681
I GGSNGGLLV C NQRPDLFGC +A VGVMDML++HK+TIGHAW +D+GCS+ ++ F
Sbjct: 120 INGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYGCSDSKQHFE 179
Query: 682 WLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLE 741
WLIKYSPLHNV+ P + YPS LLLTADHDDRVVPLHSLK +AT+QY++
Sbjct: 180 WLIKYSPLHNVKLPEADDIQ----YPSMLLLTADHDDRVVPLHSLKFIATLQYIVG---R 232
Query: 742 NSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASWV 788
+ Q NP++ ++ KAGHG G PT K+I+E +D + F+A+ L W+
Sbjct: 233 SRKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDWI 279
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Score = 77.5 bits (189), Expect = 1e-15
Identities = 26/183 (14%), Positives = 56/183 (30%), Gaps = 17/183 (9%)
Query: 502 DRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLL----YGYGGFNISVTPSFS 557
+++ +V +P +DG K+ IV K + P +L Y G +
Sbjct: 18 ASNDYIKREVMIPMRDG-VKLHTVIVLPKG---AKNAPIVLTRTPYDASGRTERLASPHM 73
Query: 558 VSRTILMRHL----GAVFCIANIRGGGEYGEEWHKGGAL-----AKKQNCFDDFISASEY 608
+ G + ++RG ++ L + + D ++
Sbjct: 74 KDLLSAGDDVFVEGGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDW 133
Query: 609 LISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWV 668
L+ + K+ + G S G V + A+ ++D + A+
Sbjct: 134 LVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGWMGDDWFNYGAFR 193
Query: 669 SDF 671
Sbjct: 194 QVN 196
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.2 bits (165), Expect = 3e-13
Identities = 39/221 (17%), Positives = 67/221 (30%), Gaps = 14/221 (6%)
Query: 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG-FNISVTPSFSVS-RTILMRHLGAVFC 572
D +PM I+ +P LL G + SV F VS T+++ GAV
Sbjct: 9 EIDD-YNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVV 67
Query: 573 IANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLV 632
+ RG G G + D + A ++ Y ++ + G GG L
Sbjct: 68 KCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLS 127
Query: 633 GACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNV 692
+ + + G + + K G + Y H V
Sbjct: 128 TYILPAKGENQGQTFTCGSALSPITDFKLYASAFSERYLGLHGLDNRAYE--MTKVAHRV 185
Query: 693 RRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQ 733
EQ D+++ H+ +L+ +
Sbjct: 186 SALEEQQFLIIHPT---------ADEKIHFQHTAELITQLI 217
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 68.1 bits (165), Expect = 5e-13
Identities = 35/212 (16%), Positives = 63/212 (29%), Gaps = 17/212 (8%)
Query: 501 FDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCL--LYGYGGFNISVTPSFSV 558
F R V + VPS I + S + P L L G + +
Sbjct: 2 FSRPGLPVEYLQVPSPSMGRDIKVQFQSG-----GANSPALYLLDGLRAQDDFSGWDINT 56
Query: 559 SRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQN-CFDDFISAS--EYLISAGYT 615
G + Y + + A Q ++ F+++ +L + +
Sbjct: 57 PAFEWYDQSGLSVVMPVGGQSSFYSDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHV 116
Query: 616 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSE 675
+ + G S P F A A G++D + T+ + D G +
Sbjct: 117 KPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQAMGPTLIGLAMGDAGGYK 176
Query: 676 EEEEF------YWLIKYSPLHNVRRPWEQNPD 701
+ + W + PL NV + N
Sbjct: 177 ASDMWGPKEDPAWQ-RNDPLLNVGKLIANNTR 207
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Score = 67.8 bits (164), Expect = 1e-12
Identities = 33/233 (14%), Positives = 68/233 (29%), Gaps = 25/233 (10%)
Query: 494 RETIIPGFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLL----YGYGGFN 549
+P + ++ +V VP +DG K+ IV KN + P LL Y G
Sbjct: 14 ASVHMPTDQQRDYIKREVMVPMRDG-VKLYTVIVIPKN---ARNAPILLTRTPYNAKGRA 69
Query: 550 ISVTPSFSVSRTILMRH-----LGAVFCIANIRGGGEYGEEWHKGGALAKKQNCF----- 599
V + ++ + G + +IRG ++ N
Sbjct: 70 NRVPNALTMREVLPQGDDVFVEGGYIRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDET 129
Query: 600 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH 659
D ++L+ + ++ + G S G V + A ++D
Sbjct: 130 TDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVDGWMGD 189
Query: 660 KFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLL 712
+ A+ Y++ + + ++ D +
Sbjct: 190 DWFHYGAFRQGAFD-------YFVSQMTARGGGNDIPRRDADDYTNFLKAGSA 235
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Score = 58.6 bits (140), Expect = 8e-10
Identities = 39/304 (12%), Positives = 69/304 (22%), Gaps = 51/304 (16%)
Query: 501 FDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSR 560
+ V G +I +++ K + PC++ G P
Sbjct: 48 SHLKTVEAYDVTFSGYRG-QRIKGWLLVPKLE--EEKLPCVVQYIGYNGGRGFPH----D 100
Query: 561 TILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQN---------------------CF 599
+ +G + + + RG G + + F
Sbjct: 101 WLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVF 160
Query: 600 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH 659
D + A E S ++ I GGS GG + A + R
Sbjct: 161 TDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSKKAKALLCDVPFLCHFRRAV 220
Query: 660 KFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDR 719
+ H + K + ++ L D+
Sbjct: 221 QLVDTHPY-----AEITNFLKTHRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNI 275
Query: 720 VVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFM 779
P P RI H G Q A ++ F+
Sbjct: 276 CPPSTVFAAYNYYA-------------GPKEIRIYPYNNHEGGGSFQ-----AVEQVKFL 317
Query: 780 AKML 783
K+
Sbjct: 318 KKLF 321
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 57.9 bits (138), Expect = 9e-10
Identities = 31/226 (13%), Positives = 65/226 (28%), Gaps = 16/226 (7%)
Query: 510 QVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGG-FNISVTPSFSVSRTI-LMRHL 567
++ + TK ++ + +P LL Y G + F ++ L
Sbjct: 5 KLDFIILNE-TKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTE 63
Query: 568 GAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSN 627
+ + RG G G++ +D I A+ G+ ++++ I G S
Sbjct: 64 NIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSY 123
Query: 628 GGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYS 687
GG + + +F C +A V Y + +
Sbjct: 124 GGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSR 183
Query: 688 PLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQ 733
+ + + + DD V S ++ +
Sbjct: 184 AENFKQVEYLL-------------IHGTADDNVHFQQSAQISKALV 216
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Score = 53.7 bits (127), Expect = 2e-08
Identities = 35/234 (14%), Positives = 67/234 (28%), Gaps = 18/234 (7%)
Query: 500 GFDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVS 559
RS V+V S DG +++P +++ P ++ +GG + S+
Sbjct: 4 DLRRSIAGSRLVWVESFDG-SRVPTYVLESGRA--PTPGPTVVLVHGGPFAEDSDSWDTF 60
Query: 560 RTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRK 619
L V G E K + ++ + + +
Sbjct: 61 AASLAAAGFHVVMPNYRGSTGYGEEWRLKII---GDPCGGELEDVSAAARWARESGLASE 117
Query: 620 LCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEE 679
L I G S GG + + +P LF +A V+D ++ + + E
Sbjct: 118 LYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTGGSRE 177
Query: 680 FYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQ 733
L+ +D R L+L+ +
Sbjct: 178 IMR------------SRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGELL 219
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 51.1 bits (121), Expect = 2e-07
Identities = 31/201 (15%), Positives = 56/201 (27%), Gaps = 18/201 (8%)
Query: 508 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHL 567
+ VPS IP+ ++ + LL + + + +
Sbjct: 4 YENLMVPSPSMGRDIPVAFLAGGPHAV-----YLLDAFNAGPDVSNWVTAGNAMNTLAGK 58
Query: 568 GAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISA--SEYLISAGYTQSRKLCIEGG 625
G G W + G+ +D F+SA ++L + G
Sbjct: 59 GISVVAPA-GGAYSMYTNWEQDGSKQ-----WDTFLSAELPDWLAANRGLAPGGHAAVGA 112
Query: 626 SNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLI- 684
+ GG A PD FG A + G + A + FG + +
Sbjct: 113 AQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGAIAAGMQQFGGVDTNGMWGAPQL 172
Query: 685 ----KYSPLHNVRRPWEQNPD 701
+ P + + N
Sbjct: 173 GRWKWHDPWVHASLLAQNNTR 193
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 49.9 bits (118), Expect = 5e-07
Identities = 26/205 (12%), Positives = 50/205 (24%), Gaps = 19/205 (9%)
Query: 508 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPC--LLYGYGGFNISVTPSFSVSRTILMR 565
V + VPS I + G LL G + +
Sbjct: 6 VEYLQVPSASMGRDIKVQF-------QGGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYY 58
Query: 566 HLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLI----SAGYTQSRKLC 621
G I + G + +W++ + + + + +
Sbjct: 59 QSGLSV-IMPVGGQSSFYTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNA 117
Query: 622 IEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFY 681
G S G P F A + G ++ T+ ++D G +
Sbjct: 118 AVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWPTLIGLAMNDSGGYNANSMWG 177
Query: 682 WL-----IKYSPLHNVRRPWEQNPD 701
+ P+ + R N
Sbjct: 178 PSSDPAWKRNDPMVQIPRLVANNTR 202
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Score = 45.0 bits (106), Expect = 2e-05
Identities = 12/119 (10%), Positives = 31/119 (26%), Gaps = 15/119 (12%)
Query: 618 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD---MLRYHKFTIGHAWVSDFGCS 674
+ + G ++GG + D+F + + +
Sbjct: 11 NSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYYTSCMYNGYPSITTP 70
Query: 675 EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQ 733
+ + + + + N+ + + T D V P +L A +
Sbjct: 71 TANMKSWSGNQIASVANLGQRK------------IYMWTGSSDTTVGPNVMNQLKAQLG 117
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Score = 38.8 bits (89), Expect = 0.002
Identities = 21/231 (9%), Positives = 46/231 (19%), Gaps = 11/231 (4%)
Query: 506 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMR 565
+H S DG+ ++ +P L G + + + L
Sbjct: 11 YHFSATSFDSVDGTRHYRVWTAVPNTTAPASGYPILYMLDGNAVMDRLDDELLKQ--LSE 68
Query: 566 HLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGG 625
V + + ++ D S S G R+L
Sbjct: 69 KTPPVIVAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETR- 127
Query: 626 SNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIK 685
+ + Q ++ G + + + S
Sbjct: 128 ------IAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLSSSYFRSYYSASPSLGRGYDA 181
Query: 686 YSPLHNVRRPWEQNPDKPFQYPST--LLLTADHDDRVVPLHSLKLLATMQY 734
P + + + V L ++
Sbjct: 182 LLSRVTAVEPLQFCTKHLAIMEGSATQGDNRETHAVGVLSKIHTTLTILKD 232
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 789 | |||
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 100.0 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 100.0 | |
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 100.0 | |
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 99.97 | |
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 99.97 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 99.9 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 99.9 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 99.86 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 99.85 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 99.83 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 99.82 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 99.81 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 99.8 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 99.8 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 99.8 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 99.79 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 99.79 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 99.77 | |
| d1sfra_ | 288 | Antigen 85a {Mycobacterium tuberculosis [TaxId: 17 | 99.77 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 99.77 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 99.77 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 99.76 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 99.73 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 99.73 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 99.71 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 99.7 | |
| d1vkha_ | 263 | Putative serine hydrolase Ydr428c {Baker's yeast ( | 99.7 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 99.7 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.69 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.66 | |
| d1fj2a_ | 229 | Acyl protein thioesterase 1 {Human (Homo sapiens) | 99.65 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 99.65 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.65 | |
| d3b5ea1 | 209 | Uncharacterized protein Mll8374 {Mesorhizobium lot | 99.63 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 99.6 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 99.6 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 99.58 | |
| d1dqza_ | 280 | Antigen 85c {Mycobacterium tuberculosis [TaxId: 17 | 99.57 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 99.57 | |
| d1r88a_ | 267 | Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta | 99.57 | |
| d1tqha_ | 242 | Carboxylesterase Est {Bacillus stearothermophilus | 99.57 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.56 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 99.54 | |
| d1uk8a_ | 271 | Meta-cleavage product hydrolase CumD {Pseudomonas | 99.54 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 99.54 | |
| d1auoa_ | 218 | Carboxylesterase {Pseudomonas fluorescens [TaxId: | 99.53 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 99.52 | |
| d1j1ia_ | 268 | Meta cleavage compound hydrolase CarC {Janthinobac | 99.51 | |
| d1uxoa_ | 186 | Hypothetical protein YdeN {Bacillus subtilis [TaxI | 99.5 | |
| d1c4xa_ | 281 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.5 | |
| d2rhwa1 | 283 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.49 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 99.48 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.48 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 99.48 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 99.48 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 99.48 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 99.47 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 99.47 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.47 | |
| d1xkla_ | 258 | Salicylic acid-binding protein 2 (SABP2) {Common t | 99.43 | |
| d1bn7a_ | 291 | Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1 | 99.43 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 99.41 | |
| d1brta_ | 277 | Bromoperoxidase A2 {Streptomyces aureofaciens [Tax | 99.4 | |
| d3c70a1 | 256 | Hydroxynitrile lyase {Rubber tree (Hevea brasilien | 99.39 | |
| d1ehya_ | 293 | Bacterial epoxide hydrolase {Agrobacterium radioba | 99.38 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 99.38 | |
| d1hkha_ | 279 | Gamma-lactamase {Aureobacterium sp. [TaxId: 51671] | 99.37 | |
| d1m33a_ | 256 | Biotin biosynthesis protein BioH {Escherichia coli | 99.34 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.33 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.29 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.28 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.27 | |
| d2d81a1 | 318 | Polyhydroxybutyrate depolymerase {Penicillium funi | 99.25 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.22 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.22 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.22 | |
| d1r3da_ | 264 | Hypothetical protein VC1974 {Vibrio cholerae [TaxI | 99.18 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.17 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.17 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.16 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.15 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 99.15 | |
| d1mj5a_ | 298 | Haloalkane dehalogenase {Sphingomonas paucimobilis | 99.14 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.14 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.11 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.09 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.06 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.01 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.99 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.96 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.94 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.93 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.89 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.88 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 98.84 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 98.82 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.82 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.81 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 98.8 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 98.79 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.78 | |
| d1ukca_ | 517 | Esterase EstA {Aspergillus niger [TaxId: 5061]} | 98.78 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 98.77 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.75 | |
| d1pjaa_ | 268 | Palmitoyl protein thioesterase 2 {Human (Homo sapi | 98.74 | |
| d1ispa_ | 179 | Lipase A {Bacillus subtilis [TaxId: 1423]} | 98.73 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.7 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.69 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 98.68 | |
| d2h7ca1 | 532 | Mammalian carboxylesterase (liver carboxylesterase | 98.64 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.64 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 98.62 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 98.6 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.6 | |
| d1thga_ | 544 | Type-B carboxylesterase/lipase {Fungus (Geotrichum | 98.59 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.58 | |
| d1jmkc_ | 230 | Surfactin synthetase, SrfA {Bacillus subtilis [Tax | 98.57 | |
| d2ha2a1 | 542 | Acetylcholinesterase {Mouse (Mus musculus) [TaxId: | 98.53 | |
| d1tcaa_ | 317 | Triacylglycerol lipase {Yeast (Candida antarctica) | 98.53 | |
| d1ea5a_ | 532 | Acetylcholinesterase {Pacific electric ray (Torped | 98.49 | |
| d1p0ia_ | 526 | Butyryl cholinesterase {Human (Homo sapiens) [TaxI | 98.48 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.47 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 98.44 | |
| d1cvla_ | 319 | Lipase {Chromobacterium viscosum [TaxId: 42739]} | 98.41 | |
| d1dx4a_ | 571 | Acetylcholinesterase {Fruit fly (Drosophila melano | 98.38 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 98.36 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.36 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.33 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.3 | |
| d2h7xa1 | 283 | Picromycin polyketide synthase {Streptomyces venez | 98.3 | |
| d2bcea_ | 579 | Bile-salt activated lipase (cholesterol esterase) | 98.29 | |
| d1ex9a_ | 285 | Lipase {Pseudomonas aeruginosa [TaxId: 287]} | 98.25 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 98.25 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.23 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.19 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.18 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.12 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.11 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.1 | |
| d2dsta1 | 122 | Hypothetical protein TTHA1544 {Thermus thermophilu | 98.07 | |
| d1xkta_ | 286 | Fatty acid synthase {Human (Homo sapiens) [TaxId: | 98.07 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.98 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.91 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.7 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 97.66 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 97.66 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 97.64 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.61 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 97.48 | |
| d1rp1a2 | 337 | Pancreatic lipase, N-terminal domain {Dog (Canis f | 97.46 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.39 | |
| d1ei9a_ | 279 | Palmitoyl protein thioesterase 1 {Cow (Bos taurus) | 97.35 | |
| d1bu8a2 | 338 | Pancreatic lipase, N-terminal domain {Rat (Rattus | 97.29 | |
| d1mo2a_ | 255 | Erythromycin polyketide synthase {Saccharopolyspor | 97.2 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 97.08 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.05 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.01 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 96.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 96.94 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 96.84 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 96.68 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.6 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 96.57 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 96.42 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 96.29 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 96.24 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 95.72 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 95.63 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 95.6 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 95.07 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 93.79 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 93.37 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 93.02 | |
| d1ivya_ | 452 | Human 'protective protein', HPP {Human (Homo sapie | 92.54 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 92.25 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 91.91 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 89.5 | |
| d1wpxa1 | 421 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 86.41 | |
| g1gxs.1 | 425 | Hydroxynitrile lyase {Sorghum (Sorghum bicolor) [T | 84.64 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 82.41 | |
| d1ac5a_ | 483 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 81.12 |
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=4.6e-55 Score=489.10 Aligned_cols=423 Identities=49% Similarity=0.925 Sum_probs=357.0
Q ss_pred CCCCCccccCCceeeeecCccccCCCCcccCCCCHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHhhhcCCCCCCceEe
Q 003878 10 SLQYPVARRDESVVDDYHGVKIVDPYRWLEDPDAEEVKDFVQKQVELTDSVLKNCDVRDKLREKITKLFDSPRYDAPFKR 89 (789)
Q Consensus 10 ~~~~p~~~~~~~~~~~~~g~~~~D~y~wled~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (789)
+++||.++|++.+++++||+++.|||+||||.++|+|++||++||+||+++|++++.++.+.++++++...+++++|+++
T Consensus 3 ~~~yP~~~~~~~~~~~~hG~~~~DpY~WLed~~~~~v~~wl~~eN~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 82 (430)
T d1qfma1 3 SFQYPDVYRDETAIQDYHGHKVCDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQCPIRGLYKERMTELYDYPKYSCHFKK 82 (430)
T ss_dssp CSCCCCCCCCTTCEEEETTEEEECTTGGGGCTTSHHHHHHHHHHHHHHHHHHHSSTHHHHHHHHHHHHTCSCEECCCEEE
T ss_pred CCCCCCCcCCCCeeeccCCCEEeeCchhhcCCCCHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHhhhcCCceeeeEEe
Confidence 45777776655468999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred CCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCc
Q 003878 90 GNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI 169 (789)
Q Consensus 90 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~ 169 (789)
|++|||+++.+++.+..+|++...++++++|||+|++++++.+.+.++++||||++|||+++.+|+|.++|+++|++||+
T Consensus 83 g~~y~~~~~~~~~~~~~~~~~~~~~~~~evllD~n~la~~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~ 162 (430)
T d1qfma1 83 GKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK 162 (430)
T ss_dssp TTEEEEEEECSSCSSCEEEEESSSSSCCEEEECGGGGCSSSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE
T ss_pred CCEEEEEEecCCCccceEEeccccCCCeeeecchhhhcccccceecceEecCCCCEEEEEeccccCchheeEEeccCcce
Confidence 99999999999888889999988888999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEE
Q 003878 170 VEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGF 249 (789)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i 249 (789)
.+++.+.++ +.++++|++|++.|
T Consensus 163 ~~~~~i~~~---------------------------------------------------------~~~~~~W~~D~~~~ 185 (430)
T d1qfma1 163 ELPDVLERV---------------------------------------------------------KFSCMAWTHDGKGM 185 (430)
T ss_dssp EEEEEEEEE---------------------------------------------------------CSCCEEECTTSSEE
T ss_pred ecccccccc---------------------------------------------------------cccceEEcCCCCEE
Confidence 888777665 35789999999999
Q ss_pred EEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEE
Q 003878 250 FYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVY 329 (789)
Q Consensus 250 ~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~ 329 (789)
+|++.+.+... ..+..++..++.++++|++|+++.++++++++.+++.++.++..|+||+++++.+..+....+.+|
T Consensus 186 ~Y~~~~~~~~~---~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~ 262 (430)
T d1qfma1 186 FYNAYPQQDGK---SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLW 262 (430)
T ss_dssp EEEECCCCSSC---CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEE
T ss_pred EEEEeccccCc---ccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEE
Confidence 99998764221 124455678999999999999999999999988777777788899999999998877766668899
Q ss_pred EEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC--CeEEeccCCCCc
Q 003878 330 YCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN--DWFEVIPEAERD 407 (789)
Q Consensus 330 ~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~--~~~~l~~~~~~~ 407 (789)
++++........ ...++.++.......+..+.++|+.||++||.++++++|+.++++.+. .|++++|+.+..
T Consensus 263 ~~d~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~ 336 (430)
T d1qfma1 263 YCDLQQESNGIT------GILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD 336 (430)
T ss_dssp EEEGGGSSSSSC------SSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSC
T ss_pred EeeCCCcccccc------cccceeEeecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcc
Confidence 999875321110 122345555555545555667889999999999999999999998765 589999987654
Q ss_pred ee-eeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc-CCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCC
Q 003878 408 VL-ESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI-EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKT 485 (789)
Q Consensus 408 ~i-~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~-~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~t 485 (789)
.+ ..+.+.+ ++|++.+++++.++|+++++++++. ..+.+ +.+++.+++.+++++.++|+++|+++|+++|.||+++
T Consensus 337 ~~~~~~~~~~-~~lvl~~~~~~~~~l~v~~~~~~~~-~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t 414 (430)
T d1qfma1 337 VLEWVACVRS-NFLVLCYLHDVKNTLQLHDLATGAL-LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (430)
T ss_dssp EEEEEEEETT-TEEEEEEEETTEEEEEEEETTTCCE-EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred eeeeEEEEEC-CEEEEEEEcCCEeEEEEEECCCCcE-EEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCC
Confidence 44 4445555 8999999999999999999997766 44444 4778878888888999999999999999999999999
Q ss_pred CCceEEEeeeccCCC
Q 003878 486 ETPEMKIFRETIIPG 500 (789)
Q Consensus 486 g~~~~~~l~~~~~~~ 500 (789)
++.+.+++++..+++
T Consensus 415 ~~~~~~~~k~~~v~G 429 (430)
T d1qfma1 415 EELEPRVFREVTVKG 429 (430)
T ss_dssp SSCCCEEEEECCCTT
T ss_pred CCcceeeEeccCCCC
Confidence 976667888876654
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=2.2e-32 Score=284.76 Aligned_cols=278 Identities=65% Similarity=1.202 Sum_probs=231.1
Q ss_pred CCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCC
Q 003878 503 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEY 582 (789)
Q Consensus 503 ~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~ 582 (789)
+++|++|+|+|+++|| ++|+++|++|++.++++++|+||++|||++.+..+.+......++...|++++..+++++..+
T Consensus 2 ~~~y~~e~v~~~s~DG-~~i~~~l~~P~~~~~~~~~P~iv~~HGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (280)
T d1qfma2 2 ASDYQTVQIFYPSKDG-TKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEY 80 (280)
T ss_dssp GGGEEEEEEEEECTTS-CEEEEEEEEETTCCCSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTT
T ss_pred cccCEEEEEEEECCCC-CEEEEEEEEcCCCCCCCCeEEEEEECCCCcccCCCCcchhhhhhhcccceeeecccccccccc
Confidence 4567889999999999 999999999999888899999999999999998988887777777768888888888888888
Q ss_pred ChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccccc
Q 003878 583 GEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT 662 (789)
Q Consensus 583 g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~ 662 (789)
+..+.............++...++.+...+...+..+++++|+|.||.++..++...+++++|++..+++.++.......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (280)
T d1qfma2 81 GETWHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYT 160 (280)
T ss_dssp HHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGST
T ss_pred chhhhhcccccccccccchhhhhhhhhhhhcccccccccccccccccchhhhhhhcccchhhheeeeccccchhhhcccc
Confidence 88887777777777778888889999999999999999999999999999999999999999999999999988776555
Q ss_pred CCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCC
Q 003878 663 IGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLEN 742 (789)
Q Consensus 663 ~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~ 742 (789)
....+.........++.......++|+.++... .......||+|++||++|++||+.|+.+|+++|+++..+ .
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~~~~~~~pP~LiihG~~D~~Vp~~~s~~l~~aL~~~g~~---~ 233 (280)
T d1qfma2 161 IGHAWTTDYGCSDSKQHFEWLIKYSPLHNVKLP----EADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGR---S 233 (280)
T ss_dssp TGGGGHHHHCCTTSHHHHHHHHHHCGGGCCCCC----SSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHHHTTT---S
T ss_pred ccccceecccCCCcccccccccccccccccchh----hhcccCCCceEEeecccCCCCCHHHHHHHHHHHHHhhhh---h
Confidence 444444444444445555666777777766543 011124789999999999999999999999999865211 1
Q ss_pred CCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCCCC
Q 003878 743 SPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGASWV 788 (789)
Q Consensus 743 ~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~~ 788 (789)
+..|+|++|++++++||++..+..+.++..+++++||.++||++|.
T Consensus 234 ~~~~~~~~l~~~~~~gHgf~~~~~~~~~~~~~~~~fl~k~L~~~~~ 279 (280)
T d1qfma2 234 RKQNNPLLIHVDTKAGHGAGKPTAKVIEEVSDMFAFIARCLNIDWI 279 (280)
T ss_dssp TTCCSCEEEEEESSCCSSTTCCHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred hcCCCcEEEEEeCcCCCCCCCcHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 2348999999999999999888777788999999999999999985
|
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=100.00 E-value=4.4e-32 Score=280.81 Aligned_cols=247 Identities=20% Similarity=0.261 Sum_probs=209.2
Q ss_pred CcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChh
Q 003878 506 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 585 (789)
Q Consensus 506 ~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~ 585 (789)
...+.|++++.|| .+|+++++.|++. .++.|+||++|||++......|.... ..++++||+|+.+|+||.+++|..
T Consensus 10 ~~~~~v~~~s~dG-~~i~~~l~~p~~~--~~~~Pviv~~HGG~~~~~~~~~~~~~-~~la~~G~~v~~~d~r~~~~~g~~ 85 (260)
T d2hu7a2 10 AGSRLVWVESFDG-SRVPTYVLESGRA--PTPGPTVVLVHGGPFAEDSDSWDTFA-ASLAAAGFHVVMPNYRGSTGYGEE 85 (260)
T ss_dssp EEEEEEEEECTTS-CEEEEEEEEETTS--CSSEEEEEEECSSSSCCCCSSCCHHH-HHHHHHTCEEEEECCTTCSSSCHH
T ss_pred CceEEEEEECCCC-CEEEEEEEeCCCC--CCCceEEEEECCCCccCCCccccHHH-HHHHhhccccccceeeeccccccc
Confidence 4578899999999 9999999999874 47889999999998877777787644 445559999999999999999999
Q ss_pred HHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCc
Q 003878 586 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGH 665 (789)
Q Consensus 586 ~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~ 665 (789)
|............++|+.+++++|.+++ ++++++|+|+|+||.+++.+++.+|+.++|+++.+|+.++.........
T Consensus 86 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~--~~~~~~i~g~s~gg~~~~~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~- 162 (260)
T d2hu7a2 86 WRLKIIGDPCGGELEDVSAAARWARESG--LASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDA- 162 (260)
T ss_dssp HHHTTTTCTTTHHHHHHHHHHHHHHHTT--CEEEEEEEEETHHHHHHHHHHHHSTTSSSEEEEESCCCCHHHHHHTCCH-
T ss_pred cccccccccchhhhhhhccccccccccc--ccceeeccccccccccccchhccCCcccccccccccchhhhhhhccccc-
Confidence 9999888888888999999999999975 6789999999999999999999999999999999999988665432221
Q ss_pred cchhhcCC---CCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCC
Q 003878 666 AWVSDFGC---SEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLEN 742 (789)
Q Consensus 666 ~~~~e~g~---p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~ 742 (789)
+...+.. ..+ .+.+...+|+.++++. .+|+|++||++|.+||+.++.+++++|++.
T Consensus 163 -~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----------~~P~liihG~~D~~vp~~~~~~~~~~l~~~------- 221 (260)
T d2hu7a2 163 -AFRNFIEQLTGGS---REIMRSRSPINHVDRI----------KEPLALIHPQNDSRTPLKPLLRLMGELLAR------- 221 (260)
T ss_dssp -HHHHHHHHHHCSC---HHHHHHTCGGGCGGGC----------CSCEEEEEETTCSSSCSHHHHHHHHHHHHT-------
T ss_pred -ccccccccccccc---cccccccchhhccccc----------CCCceeeecccCceecHHHHHHHHHHHHHC-------
Confidence 1111111 122 3446888999999886 789999999999999999999999999998
Q ss_pred CCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 743 SPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 743 ~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
|+++++.+++++||++....+ ..+.+..+.+||.++|+
T Consensus 222 ---~~~~~~~~~~g~~H~~~~~e~-~~~~~~~~~~fl~~hl~ 259 (260)
T d2hu7a2 222 ---GKTFEAHIIPDAGHAINTMED-AVKILLPAVFFLATQRE 259 (260)
T ss_dssp ---TCCEEEEEETTCCSSCCBHHH-HHHHHHHHHHHHHHHHH
T ss_pred ---CCCeEEEEECcCCCCCCChHh-HHHHHHHHHHHHHHHhc
Confidence 999999999999999876555 36788899999999985
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.97 E-value=5.6e-31 Score=271.98 Aligned_cols=254 Identities=16% Similarity=0.156 Sum_probs=210.7
Q ss_pred cEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccC-CCCCCH-HHHHHHHcCCeEEEEEeecCCCCCCh
Q 003878 507 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV-TPSFSV-SRTILMRHLGAVFCIANIRGGGEYGE 584 (789)
Q Consensus 507 ~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~-~~~~~~-~~~~~l~~~G~~v~~~~~RG~g~~g~ 584 (789)
..|++.+...|| +++.+.|+.|+++++++++|+||++|||++... ...+.. ....+++++||+|+.+|+||++++|.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~l~lP~~~~~~kk~P~iv~~HGGp~~~~~~~~~~~~~~~~~~a~~g~~V~~~d~rg~~~~~~ 80 (258)
T d2bgra2 2 PSKKLDFIILNE-TKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGD 80 (258)
T ss_dssp CEEEEEEEEETT-EEEEEEEEECTTCCTTSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSSSCH
T ss_pred CceeEEEEEeCC-cEEEEEEEECCCcCCCCCeeEEEEEcCCCCcccCCCccCcCHHHHHHhcCCcEEEeecccccCCcch
Confidence 468899999999 999999999999888899999999999854432 222322 22445677999999999999999999
Q ss_pred hHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCC
Q 003878 585 EWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIG 664 (789)
Q Consensus 585 ~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~ 664 (789)
.|........+.....|..++++++.+++.+|+++|+++|+|+||.++++++..+|++++++++..+..........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~i~i~G~S~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 157 (258)
T d2bgra2 81 KIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDSV--- 157 (258)
T ss_dssp HHHGGGTTCTTSHHHHHHHHHHHHHTTSSSEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBHH---
T ss_pred HHHHhhhhhhhhHHHHHHHHHHHHhhhhcccccccccccCcchhhcccccccccCCCcceEEEEeeccccccccccc---
Confidence 99999888888888999999999999999999999999999999999999999999999999998887765443321
Q ss_pred ccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCC
Q 003878 665 HAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSP 744 (789)
Q Consensus 665 ~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~ 744 (789)
......|.+......+.+..++|+..+.+. ..+|+|++||++|++||+.++.+++++|+++
T Consensus 158 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~P~li~hG~~D~~Vp~~~s~~~~~~l~~~--------- 218 (258)
T d2bgra2 158 -YTERYMGLPTPEDNLDHYRNSTVMSRAENF---------KQVEYLLIHGTADDNVHFQQSAQISKALVDV--------- 218 (258)
T ss_dssp -HHHHHHCCCSTTTTHHHHHHSCSGGGGGGG---------GGSEEEEEEETTCSSSCTHHHHHHHHHHHHH---------
T ss_pred -ccchhcccccchhhHHHhhccccccccccc---------ccCChheeeecCCCcccHHHHHHHHHHHHHC---------
Confidence 112233444333334556888999888875 3589999999999999999999999999998
Q ss_pred CCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 745 QTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 745 ~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
|++++++++++++|++...... .+....+.+||.++|..
T Consensus 219 -g~~~~~~~~~g~~H~~~~~~~~-~~~~~~i~~fl~~~l~~ 257 (258)
T d2bgra2 219 -GVDFQAMWYTDEDHGIASSTAH-QHIYTHMSHFIKQCFSL 257 (258)
T ss_dssp -TCCCEEEEETTCCTTCCSHHHH-HHHHHHHHHHHHHHTTC
T ss_pred -CCCEEEEEECCCCCCCCCCccH-HHHHHHHHHHHHHHhcC
Confidence 9999999999999998776553 67788999999999875
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.7e-31 Score=276.03 Aligned_cols=242 Identities=17% Similarity=0.170 Sum_probs=192.3
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccC-CCCCCHH-HHHHHHcCCeEEEEEeecCCCCCChhHHhccccc
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISV-TPSFSVS-RTILMRHLGAVFCIANIRGGGEYGEEWHKGGALA 593 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~-~~~~~~~-~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~ 593 (789)
.|| .+|+++|+.|++.++++++|+||++|||++... ...|... ...+|+++||+|+++|+||++++|.+|.......
T Consensus 10 ~dg-~~l~~~l~~P~~~~~~~k~Pviv~~HGGp~~~~~~~~~~~~~~~~~la~~G~~vv~~d~rGs~~~g~~~~~~~~~~ 88 (258)
T d1xfda2 10 IDD-YNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRR 88 (258)
T ss_dssp ETT-EEECCBEEBCSSCCSSSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTC
T ss_pred eCC-eEEEEEEEECCCcCCCCceeEEEEEcCCccccCcCCCcCcchHHHHHhcCCcEEEEeccccccccchhHhhhhhcc
Confidence 399 999999999999877888999999999865432 3344322 2456777999999999999999999999988778
Q ss_pred CCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC----ceeEEEecCCcccccccccccCCccchh
Q 003878 594 KKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD----LFGCALAHVGVMDMLRYHKFTIGHAWVS 669 (789)
Q Consensus 594 ~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd----~f~a~v~~~p~~d~~~~~~~~~~~~~~~ 669 (789)
.+....+|+++++++|+++..+|++||+++|+|+||.+++.++...++ .|++.+...|+........ .....
T Consensus 89 ~g~~~~~d~~~~i~~l~~~~~id~~ri~v~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 164 (258)
T d1xfda2 89 LGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYAS----AFSER 164 (258)
T ss_dssp TTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSBH----HHHHH
T ss_pred chhHHHHHHHHhhhhhcccccccccceeccccCchHHHHHHHHhcCCcccceeeeeeeccccceeeecccc----ccccc
Confidence 888889999999999999999999999999999999999998877655 5777777777655432211 01112
Q ss_pred hcCCC-CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCc
Q 003878 670 DFGCS-EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNP 748 (789)
Q Consensus 670 e~g~p-~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 748 (789)
..+.+ .+++. +...+|..++... ..+|+|++||+.|.+||++++.+++++|++. +.+
T Consensus 165 ~~~~~~~~~~~---~~~~s~~~~~~~~---------~~~p~Li~hG~~D~~vp~~~s~~~~~~l~~~----------~~~ 222 (258)
T d1xfda2 165 YLGLHGLDNRA---YEMTKVAHRVSAL---------EEQQFLIIHPTADEKIHFQHTAELITQLIRG----------KAN 222 (258)
T ss_dssp HHCCCSSCCSS---TTTTCTHHHHTSC---------CSCEEEEEEETTCSSSCHHHHHHHHHHHHHT----------TCC
T ss_pred cccccccchHH---hhccchhhhhhhh---------hcccccccccCCCCCcCHHHHHHHHHHHHHC----------CCC
Confidence 22333 12211 2455677666664 4689999999999999999999999999998 899
Q ss_pred EEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 749 IIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 749 ~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
++++++|++||++..... ....++.+++||.++|++
T Consensus 223 ~~~~~~p~~~H~~~~~~~-~~~~~~~~~~f~~~~~~~ 258 (258)
T d1xfda2 223 YSLQIYPDESHYFTSSSL-KQHLYRSIINFFVECFRI 258 (258)
T ss_dssp CEEEEETTCCSSCCCHHH-HHHHHHHHHHHHTTTTCC
T ss_pred EEEEEECCCCCCCCCCcC-HHHHHHHHHHHHHHhhCC
Confidence 999999999999876555 366778999999999875
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=2.9e-23 Score=220.29 Aligned_cols=246 Identities=18% Similarity=0.159 Sum_probs=177.2
Q ss_pred CCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCC
Q 003878 503 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEY 582 (789)
Q Consensus 503 ~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~ 582 (789)
...+.++.+++++.|| .+|+++++.|++. .++.|+||++||+.+..... .....+++ +||+|+++|+||.|..
T Consensus 50 ~~~~~~~~v~~~s~dG-~~l~~~l~~P~~~--~~~~P~Vv~~hG~~~~~~~~---~~~~~~a~-~G~~v~~~D~rG~G~s 122 (322)
T d1vlqa_ 50 LKTVEAYDVTFSGYRG-QRIKGWLLVPKLE--EEKLPCVVQYIGYNGGRGFP---HDWLFWPS-MGYICFVMDTRGQGSG 122 (322)
T ss_dssp CSSEEEEEEEEECGGG-CEEEEEEEEECCS--CSSEEEEEECCCTTCCCCCG---GGGCHHHH-TTCEEEEECCTTCCCS
T ss_pred CCCeEEEEEEEECCCC-cEEEEEEEeccCC--CCCccEEEEecCCCCCcCcH---HHHHHHHh-CCCEEEEeeccccCCC
Confidence 3456788999999999 9999999999874 47899999999976543322 22334555 9999999999998876
Q ss_pred ChhHHhcccccC---------------------CcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC
Q 003878 583 GEEWHKGGALAK---------------------KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD 641 (789)
Q Consensus 583 g~~~~~~~~~~~---------------------~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd 641 (789)
+........... ....+.|++++++++..+..+|++||+++|+|+||.+++.++...|
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~a~~~~~~~~~~d~~ri~~~G~S~GG~~a~~~~~~~~- 201 (322)
T d1vlqa_ 123 WLKGDTPDYPEGPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK- 201 (322)
T ss_dssp SSCCCCCBCCSSSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-
T ss_pred CCCccccccccccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCCcCchhccccccccchHHHHHHHhcCC-
Confidence 544222211110 0123579999999999999999999999999999999999998865
Q ss_pred ceeEEEecCCcccccccc-cccCCccch---hhc-CCC-CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecC
Q 003878 642 LFGCALAHVGVMDMLRYH-KFTIGHAWV---SDF-GCS-EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTAD 715 (789)
Q Consensus 642 ~f~a~v~~~p~~d~~~~~-~~~~~~~~~---~e~-g~p-~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~ 715 (789)
.++++|+.+|..+..... .......+. ... ..+ ..+...+.+..++|..++.++ .+|+|++||.
T Consensus 202 ~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~i----------~~P~Lv~~G~ 271 (322)
T d1vlqa_ 202 KAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVNFAARA----------KIPALFSVGL 271 (322)
T ss_dssp SCCEEEEESCCSCCHHHHHHHCCCTTHHHHHHHHHHCTTCHHHHHHHHHTTCHHHHHTTC----------CSCEEEEEET
T ss_pred CccEEEEeCCccccHHHHHhhccccchhhHHhhhhcCcchhhhHHHHhhhhhHHHHHhcC----------CCCEEEEEeC
Confidence 688888888866543322 111111110 001 112 333455667778999888887 7899999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 716 HDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 716 ~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
+|.+||+.++.++++++ +.|++++++|++||..... ......++||.++|.
T Consensus 272 ~D~~vp~~~~~~~~~~~-------------~~~~~l~~~p~~~H~~~~~-----~~~~~~~~~l~~~l~ 322 (322)
T d1vlqa_ 272 MDNICPPSTVFAAYNYY-------------AGPKEIRIYPYNNHEGGGS-----FQAVEQVKFLKKLFE 322 (322)
T ss_dssp TCSSSCHHHHHHHHHHC-------------CSSEEEEEETTCCTTTTHH-----HHHHHHHHHHHHHHC
T ss_pred CCCCcCHHHHHHHHHHC-------------CCCeEEEEECCCCCCCccc-----cCHHHHHHHHHHHhC
Confidence 99999999987776543 5678999999999976432 122345789998874
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.90 E-value=4.2e-23 Score=217.87 Aligned_cols=246 Identities=15% Similarity=0.099 Sum_probs=176.5
Q ss_pred CCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCC
Q 003878 503 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEY 582 (789)
Q Consensus 503 ~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~ 582 (789)
...+.++++++++.|| .+|+++++.|++ .++.|+||++||+.+... .+.... ..++++||+|+++|+||.|+.
T Consensus 51 ~~~~~~~~v~~~~~dg-~~i~~~l~~P~~---~~~~P~vv~~HG~~~~~~--~~~~~~-~~la~~Gy~vi~~D~rG~G~s 123 (318)
T d1l7aa_ 51 ADGVKVYRLTYKSFGN-ARITGWYAVPDK---EGPHPAIVKYHGYNASYD--GEIHEM-VNWALHGYATFGMLVRGQQRS 123 (318)
T ss_dssp CSSEEEEEEEEEEGGG-EEEEEEEEEESS---CSCEEEEEEECCTTCCSG--GGHHHH-HHHHHTTCEEEEECCTTTSSS
T ss_pred CCCeEEEEEEEECCCC-cEEEEEEEecCC---CCCceEEEEecCCCCCcc--chHHHH-HHHHHCCCEEEEEeeCCCCCC
Confidence 3467789999999999 999999999987 478999999999866543 233333 444559999999999999887
Q ss_pred ChhHHhcccccC--------------CcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEe
Q 003878 583 GEEWHKGGALAK--------------KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA 648 (789)
Q Consensus 583 g~~~~~~~~~~~--------------~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~ 648 (789)
+..+........ ....+.|...++++|..++.+++++|+++|+|+||.+++.++...|+ ++++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~v~~~~i~~~G~s~Gg~~~~~~~~~~~~-~~~~~~ 202 (318)
T d1l7aa_ 124 EDTSISPHGHALGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVA 202 (318)
T ss_dssp CCCCCCSSCCSSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEE
T ss_pred CCCcccchhhhhcchhhchhhhhhhhhHHHHHHHHHHHHHHHhcccccCcceEEEeeccccHHHHHHhhcCcc-cceEEE
Confidence 554332211111 11235789999999999999999999999999999999999999775 556666
Q ss_pred cCCccccccc-ccccCCcc------chhhcCCC-CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCC
Q 003878 649 HVGVMDMLRY-HKFTIGHA------WVSDFGCS-EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRV 720 (789)
Q Consensus 649 ~~p~~d~~~~-~~~~~~~~------~~~e~g~p-~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V 720 (789)
.+|....... ........ +....+.. ...+.+..+..+++...++++ .+|+||+||++|..|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----------~~P~Lii~G~~D~~v 272 (318)
T d1l7aa_ 203 DYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFDIMNLADRV----------KVPVLMSIGLIDKVT 272 (318)
T ss_dssp ESCCSCCHHHHHHHCCSTTTTHHHHHHHHSCCHHHHHHHHHHHHTTCHHHHGGGC----------CSCEEEEEETTCSSS
T ss_pred eccccccHHHHhhcccccccchhhhhhhccccccccccccccccccccccccccC----------CCCEEEEEECCCCCc
Confidence 6665443222 11111110 11112222 222333444555666677765 789999999999999
Q ss_pred CcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 721 VPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 721 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
|+.++.+++++| +.+.++++++++||.+.. +...++++||+++|+.
T Consensus 273 p~~~~~~~~~~l-------------~~~~~l~~~~~~gH~~~~------~~~~~~~~fl~~~LkG 318 (318)
T d1l7aa_ 273 PPSTVFAAYNHL-------------ETKKELKVYRYFGHEYIP------AFQTEKLAFFKQILKG 318 (318)
T ss_dssp CHHHHHHHHHHC-------------CSSEEEEEETTCCSSCCH------HHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHc-------------CCCcEEEEECCCCCCCcH------HHHHHHHHHHHHhCCC
Confidence 999998887765 446899999999997642 3455788999999974
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.86 E-value=6e-21 Score=205.93 Aligned_cols=239 Identities=15% Similarity=0.084 Sum_probs=167.8
Q ss_pred CCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCCh
Q 003878 505 EFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE 584 (789)
Q Consensus 505 ~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~ 584 (789)
....|++.++. || .+|+++++.|++ .++.|+||++||..+... .+.. ....|.++||+|+.+|+||.|+...
T Consensus 103 ~~~~e~v~ip~-dg-~~l~g~l~~P~~---~~~~P~Vi~~hG~~~~~e--~~~~-~~~~l~~~G~~vl~~D~~G~G~s~~ 174 (360)
T d2jbwa1 103 SPPAERHELVV-DG-IPMPVYVRIPEG---PGPHPAVIMLGGLESTKE--ESFQ-MENLVLDRGMATATFDGPGQGEMFE 174 (360)
T ss_dssp SSCEEEEEEEE-TT-EEEEEEEECCSS---SCCEEEEEEECCSSCCTT--TTHH-HHHHHHHTTCEEEEECCTTSGGGTT
T ss_pred CCCeEEeecCc-CC-cccceEEEecCC---CCCceEEEEeCCCCccHH--HHHH-HHHHHHhcCCEEEEEccccccccCc
Confidence 34578888885 78 999999999986 478999999999654432 2332 3455556999999999999876432
Q ss_pred hHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccC-
Q 003878 585 EWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTI- 663 (789)
Q Consensus 585 ~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~- 663 (789)
.. ........++.+++++|.....+|++||+|+|+|+||++++.++...| +++|+|+..|+.++........
T Consensus 175 ~~------~~~~~~~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~p-ri~a~V~~~~~~~~~~~~~~~~~ 247 (360)
T d2jbwa1 175 YK------RIAGDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEP-RLAACISWGGFSDLDYWDLETPL 247 (360)
T ss_dssp TC------CSCSCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCCSCSTTGGGSCHH
T ss_pred cc------cccccHHHHHHHHHHHHHhcccccccceeehhhhcccHHHHHHhhcCC-CcceEEEEcccccHHHHhhhhhh
Confidence 11 111223346677899999999999999999999999999999999987 5899999999888644322110
Q ss_pred -CccchhhcCCCCcHHH-HHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCC
Q 003878 664 -GHAWVSDFGCSEEEEE-FYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLE 741 (789)
Q Consensus 664 -~~~~~~e~g~p~~~~~-~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~ 741 (789)
...|....+.+...+. ......++....+.++ .+|+|++||++|. ||+.++.++++++..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----------~~P~Lii~G~~D~-vp~~~~~~l~~~~~~------- 309 (360)
T d2jbwa1 248 TKESWKYVSKVDTLEEARLHVHAALETRDVLSQI----------ACPTYILHGVHDE-VPLSFVDTVLELVPA------- 309 (360)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHTCCTTTGGGC----------CSCEEEEEETTSS-SCTHHHHHHHHHSCG-------
T ss_pred hhHHHHHhccCCchHHHHHHHHhhcchhhhHhhC----------CCCEEEEEeCCCC-cCHHHHHHHHHhcCC-------
Confidence 0111112233322222 2233444555555555 7899999999997 799999999887753
Q ss_pred CCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 742 NSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 742 ~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
..+++.++++++|...... .+....+.+||.++|.
T Consensus 310 -----~~~~l~~~~~g~H~~~~~~---~~~~~~i~dWl~~~L~ 344 (360)
T d2jbwa1 310 -----EHLNLVVEKDGDHCCHNLG---IRPRLEMADWLYDVLV 344 (360)
T ss_dssp -----GGEEEEEETTCCGGGGGGT---THHHHHHHHHHHHHHT
T ss_pred -----CCeEEEEECCCCcCCCcCh---HHHHHHHHHHHHHHhc
Confidence 3467889999999643222 2445678899999984
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.85 E-value=1.8e-20 Score=198.56 Aligned_cols=247 Identities=18% Similarity=0.162 Sum_probs=160.2
Q ss_pred CCCCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCC-CCHHHHHHHHcCCeEEEEEeecCC
Q 003878 501 FDRSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPS-FSVSRTILMRHLGAVFCIANIRGG 579 (789)
Q Consensus 501 ~~~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~-~~~~~~~~l~~~G~~v~~~~~RG~ 579 (789)
.....+..+.+.+++.||..+|++.+|.|++. +++.|+|||+|||........ +......++.+.||+|+.+|||..
T Consensus 43 ~~~~~v~~~~~~~~~~~g~~~i~~~~~~P~~~--~~~~Pvvv~iHGGG~~~g~~~~~~~~~~~la~~~G~~V~~vdYrl~ 120 (317)
T d1lzla_ 43 LSFDGVSLRELSAPGLDGDPEVKIRFVTPDNT--AGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLA 120 (317)
T ss_dssp CCCTTEEEEEEEECCSTTCCCEEEEEEEESSC--CSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCT
T ss_pred CCCCCceEEEEEEecCCCCceEEEEEECCCCC--CCCCcEEEEecCcccccccccccchHHHhHHhhcCCcccccccccc
Confidence 33445677889999999833699999999873 578999999999854433332 333344555556999999999987
Q ss_pred CCCChhHHhcccccCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhCCC----ceeEEEecCCc
Q 003878 580 GEYGEEWHKGGALAKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQRPD----LFGCALAHVGV 652 (789)
Q Consensus 580 g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~pd----~f~a~v~~~p~ 652 (789)
++.. ....++|+.++++|+.++ ..+|++||+|+|+|+||++++.++.+.++ .....+...+.
T Consensus 121 pe~~-----------~~~~~~d~~~~~~~~~~~~~~~g~D~~rI~l~G~SaGg~la~~~~~~~~~~~~~~~~~~~~~~~~ 189 (317)
T d1lzla_ 121 PETT-----------FPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPE 189 (317)
T ss_dssp TTSC-----------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCC
T ss_pred cccc-----------ccccccccccchhHHHHHHHHhCCCHHHEEEEEeccccHHHHHHHhhhhhccccccccccccccc
Confidence 7532 234578898999888754 23799999999999999999988876432 12333333332
Q ss_pred cccc-ccc---cccCCccc---------hhhcC----CCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecC
Q 003878 653 MDML-RYH---KFTIGHAW---------VSDFG----CSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTAD 715 (789)
Q Consensus 653 ~d~~-~~~---~~~~~~~~---------~~e~g----~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~ 715 (789)
.+.. ... .+.....+ ...++ .+.++... ...+|...... ...||+||++|+
T Consensus 190 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---------~~~pp~li~~g~ 257 (317)
T d1lzla_ 190 LDDRLETVSMTNFVDTPLWHRPNAILSWKYYLGESYSGPEDPDVS---IYAAPSRATDL---------TGLPPTYLSTME 257 (317)
T ss_dssp CCTTCCSHHHHHCSSCSSCCHHHHHHHHHHHHCTTCCCTTCSCCC---TTTCGGGCSCC---------TTCCCEEEEEET
T ss_pred ccccccccccccccccchhhhhhhHHHHhhhccccccCCCCchhc---cccCchhhhhc---------cCCCCeEEEECC
Confidence 2211 110 00000000 00000 00000000 00112111111 236899999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCC--chhhHHHHHHHHHHHHHHHhC
Q 003878 716 HDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL--PTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 716 ~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~--~~~~~~~~~~~~~~fl~~~l~ 784 (789)
+|. ...++.+|+++|++. |++++++++++++|++.. ......+...++++||.++|+
T Consensus 258 ~D~--l~~~~~~~~~~L~~~----------G~~v~~~~~~g~~H~f~~~~~~~~~~~~~~~~~~~l~r~Lr 316 (317)
T d1lzla_ 258 LDP--LRDEGIEYALRLLQA----------GVSVELHSFPGTFHGSALVATAAVSERGAAEALTAIRRGLR 316 (317)
T ss_dssp TCT--THHHHHHHHHHHHHT----------TCCEEEEEETTCCTTGGGSTTSHHHHHHHHHHHHHHHHHTC
T ss_pred CCC--CHHHHHHHHHHHHHC----------CCCEEEEEECcCccCCcccCCchHHHHHHHHHHHHHHHHhC
Confidence 994 467999999999998 999999999999998742 122234567789999999886
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=99.83 E-value=2.1e-19 Score=193.51 Aligned_cols=258 Identities=16% Similarity=0.143 Sum_probs=165.8
Q ss_pred CCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCC--HHHHHHHHcCCeEEEEEeecCCC
Q 003878 503 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFS--VSRTILMRHLGAVFCIANIRGGG 580 (789)
Q Consensus 503 ~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~--~~~~~~l~~~G~~v~~~~~RG~g 580 (789)
...+..+...+++.|| ..|++.+|.|++. +++.|+|||+|||.......... ......++++|++|+.+|||.++
T Consensus 74 ~~~v~~~~~~i~~~dg-~~i~~~iy~P~~~--~~~~Pviv~~HGGG~~~gs~~~~~~~~~~~~la~~g~~VvsvdYRla~ 150 (358)
T d1jkma_ 74 RDDVETSTETILGVDG-NEITLHVFRPAGV--EGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAW 150 (358)
T ss_dssp CCCEEEEEEEEECTTS-CEEEEEEEEETTC--CSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSE
T ss_pred CCCccEEEEEEeCCCC-CEEEEEEEecCCC--CCCCCeEEEecCCeeeeccccccccchHHHHHHhhhheeeeeeecccc
Confidence 4456778888999999 9999999999974 57899999999995543332211 12345555699999999999874
Q ss_pred CCChhHHhcccccCCcchHHHHHHHHHHHHHcC-CCCCCcEEEEeeChHHHHHHHHHHh-----CCCceeEEEecCCccc
Q 003878 581 EYGEEWHKGGALAKKQNCFDDFISASEYLISAG-YTQSRKLCIEGGSNGGLLVGACINQ-----RPDLFGCALAHVGVMD 654 (789)
Q Consensus 581 ~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~-~~d~~~i~i~G~S~GG~l~~~~~~~-----~pd~f~a~v~~~p~~d 654 (789)
+... .......++|+.++++||.++. ..|++||+|+|.|+||.|++.++.. .+..+.+.++.+|+++
T Consensus 151 ~~~p-------e~~~p~~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~~~~~p~~~ 223 (358)
T d1jkma_ 151 TAEG-------HHPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYIS 223 (358)
T ss_dssp ETTE-------ECCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCC
T ss_pred cccc-------cCCCchhhHHHHHHHHHHHHhccccCCccceeecccCchHHHHHHHHHHhhcCCCccccccccccceec
Confidence 4221 2234567899999999998763 3578999999999999999877643 2346788899999887
Q ss_pred cccccc----ccCCccchhhcCCCCcHHH-HHHHHhcCcccCCCCCCCCCCC-----CCCCCCeEEEEecCCCCCCCcHH
Q 003878 655 MLRYHK----FTIGHAWVSDFGCSEEEEE-FYWLIKYSPLHNVRRPWEQNPD-----KPFQYPSTLLLTADHDDRVVPLH 724 (789)
Q Consensus 655 ~~~~~~----~~~~~~~~~e~g~p~~~~~-~~~l~~~sP~~~v~~~~~~~~~-----~~~~~pp~Li~~g~~D~~V~~~~ 724 (789)
...... +.....+....+....... ......|.|...-......... .....||+||++|++|..+ .+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~a~~~~~~~lPp~li~~g~~D~l~--~e 301 (358)
T d1jkma_ 224 GGYAWDHERRLTELPSLVENDGYFIENGGMALLVRAYDPTGEHAEDPIAWPYFASEDELRGLPPFVVAVNELDPLR--DE 301 (358)
T ss_dssp CCTTSCHHHHHHHCTHHHHTTTSSSCHHHHHHHHHHHSSSSTTTTCTTTCGGGCCHHHHTTCCCEEEEEETTCTTH--HH
T ss_pred cccCccchhhcccccchhcccccccchhhhhhHHhhcCCccCCccCccccccccchhhccCCCCEEEEECCCCCCH--HH
Confidence 643221 0000000000111111111 1112222221100000000000 0013689999999999654 68
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCC---c--hhhHHHHHHHHHHHHHHH
Q 003878 725 SLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL---P--TQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 725 ~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~---~--~~~~~~~~~~~~~fl~~~ 782 (789)
+.+|+++|+++ |++++++++++++|++.. . .....+....+..|+..+
T Consensus 302 ~~~~~~~L~~a----------Gv~v~~~~~~g~~Hgf~~~~~~~~~~~~~~~~~~i~~Fl~~~ 354 (358)
T d1jkma_ 302 GIAFARRLARA----------GVDVAARVNIGLVHGADVIFRHWLPAALESTVRDVAGFAADR 354 (358)
T ss_dssp HHHHHHHHHHT----------TCCEEEEEETTCCTTHHHHSGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC----------CCcEEEEEECCCccchhhhccccCCHHHHHHHHHHHHHHHHH
Confidence 99999999998 999999999999998621 1 122234456778888765
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.82 E-value=1.5e-19 Score=190.88 Aligned_cols=228 Identities=16% Similarity=0.129 Sum_probs=160.8
Q ss_pred CcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCC-CCHHHHHHHHcCCeEEEEEeecCCCCCCh
Q 003878 506 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPS-FSVSRTILMRHLGAVFCIANIRGGGEYGE 584 (789)
Q Consensus 506 ~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~-~~~~~~~~l~~~G~~v~~~~~RG~g~~g~ 584 (789)
..++.+++++.+| .|++.+|.|++ +.|+|||+|||.....+.. +...+..++++.|++|+.+|||.+.+..
T Consensus 54 ~~~~~~~i~~~~g--~i~~~iy~P~~-----~~P~il~iHGGg~~~g~~~~~~~~~~~l~~~~g~~Vv~v~Yrlap~~~- 125 (311)
T d1jjia_ 54 ERVEDRTIKGRNG--DIRVRVYQQKP-----DSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEHK- 125 (311)
T ss_dssp SEEEEEEEEETTE--EEEEEEEESSS-----SEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTTSC-
T ss_pred ceEEEEEEeCCCC--cEEEEEEcCCC-----CceEEEEEcCCCCccCChhhhhhhhhhhhhcCCcEEEEeccccccccc-
Confidence 4567788888887 69999999974 4699999999965444433 3333445666579999999999987642
Q ss_pred hHHhcccccCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC----CCceeEEEecCCcccccc
Q 003878 585 EWHKGGALAKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQR----PDLFGCALAHVGVMDMLR 657 (789)
Q Consensus 585 ~~~~~~~~~~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~----pd~f~a~v~~~p~~d~~~ 657 (789)
....++|+.++++|+.++ ..+|++||+|+|.|+||.+++.++... .....+.++..|.+|+..
T Consensus 126 ----------~p~~~~d~~~a~~~~~~~~~~~~~d~~ri~v~G~SaGG~la~~~~~~~~~~~~~~~~~~~l~~p~~~~~~ 195 (311)
T d1jjia_ 126 ----------FPAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNFVA 195 (311)
T ss_dssp ----------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCCSSS
T ss_pred ----------cchhhhhhhhhhhHHHHhHHHhCcChhHEEEEeeecCCcceeechhhhhhccccccceeeeecceeeecc
Confidence 344578999999998876 357999999999999999988776432 346788899999888643
Q ss_pred cccccCCccchhhcCC--C-CcHHHHHHH-------------HhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCC
Q 003878 658 YHKFTIGHAWVSDFGC--S-EEEEEFYWL-------------IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVV 721 (789)
Q Consensus 658 ~~~~~~~~~~~~e~g~--p-~~~~~~~~l-------------~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~ 721 (789)
... ...+++. + ......... ...||+...... .||+||+||++|..+
T Consensus 196 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~----------~pP~li~~g~~D~l~- 258 (311)
T d1jjia_ 196 PTP------SLLEFGEGLWILDQKIMSWFSEQYFSREEDKFNPLASVIFADLEN----------LPPALIITAEYDPLR- 258 (311)
T ss_dssp CCH------HHHHTSSSCSSCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCTT----------CCCEEEEEEEECTTH-
T ss_pred Ccc------cccccccccccccHHHhhhhhhhcccccccccccccchhhccccc----------CCCEEEEEcCCCCCh-
Confidence 221 0011110 0 011000000 123676665443 799999999999654
Q ss_pred cHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCc---hhhHHHHHHHHHHHH
Q 003878 722 PLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP---TQKMIDEAADRYGFM 779 (789)
Q Consensus 722 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~---~~~~~~~~~~~~~fl 779 (789)
.++..|+++|+++ |++++++++++++|+|..- ..+..+...++.+||
T Consensus 259 -d~~~~~~~~L~~~----------Gv~v~~~~~~g~~H~F~~~~~~~~~a~~a~~~i~~fl 308 (311)
T d1jjia_ 259 -DEGEVFGQMLRRA----------GVEASIVRYRGVLHGFINYYPVLKAARDAINQIAALL 308 (311)
T ss_dssp -HHHHHHHHHHHHT----------TCCEEEEEEEEEETTGGGGTTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHC----------CCCEEEEEECCCCCccccCCCcCHHHHHHHHHHHHHh
Confidence 5899999999998 9999999999999986421 223345667777776
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=99.81 E-value=4e-19 Score=187.20 Aligned_cols=237 Identities=14% Similarity=0.087 Sum_probs=157.5
Q ss_pred cEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCCHHHHHHHHcCCeEEEEEeecCCCCCChh
Q 003878 507 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 585 (789)
Q Consensus 507 ~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~ 585 (789)
.++.+.++. +| .+|.+.+|+|++. +++.|+|||+|||...... ..+......++.+.|+.|+.+|||...+.
T Consensus 45 ~~~~~~~~~-~g-~~i~~~~y~P~~~--~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~a~~~~~~v~~v~Yrl~p~~--- 117 (308)
T d1u4na_ 45 EVREFDMDL-PG-RTLKVRMYRPEGV--EPPYPALVYYHGGGWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEH--- 117 (308)
T ss_dssp EEEEEEEEE-TT-EEEEEEEEECTTC--CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTS---
T ss_pred cEEEEEEec-CC-ceEEEEEEecccc--CCCCCEEEEEecCeeeeeccccccchhhhhhhccccccccccccccccc---
Confidence 466777765 78 8999999999874 4689999999999544333 33334445555544567888999987653
Q ss_pred HHhcccccCCcchHHHHHHHHHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhCCC----ceeEEEecCCccccccc
Q 003878 586 WHKGGALAKKQNCFDDFISASEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQRPD----LFGCALAHVGVMDMLRY 658 (789)
Q Consensus 586 ~~~~~~~~~~~~~~~D~~~~~~~L~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~pd----~f~a~v~~~p~~d~~~~ 658 (789)
......+|+.++++|+.++. .+|++||+++|+|+||.++++++...++ ...+.....|..+....
T Consensus 118 --------~~p~~~~D~~~~~~~l~~~~~~~~~d~~ri~~~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (308)
T d1u4na_ 118 --------KFPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYDPA 189 (308)
T ss_dssp --------CTTHHHHHHHHHHHHHHTTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHHTCCCCCCEEEESCCCCCCTT
T ss_pred --------ccccccchhhhhhhHHHHhHHhcCCCcceEEEeeccccchhHHHHHHhhhhccCCCcccccccccccccccc
Confidence 23445789999999999764 5799999999999999999988776543 23455555555443222
Q ss_pred ccccCCccchhhcCCC---CcHHHHHHHH------------hcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcH
Q 003878 659 HKFTIGHAWVSDFGCS---EEEEEFYWLI------------KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPL 723 (789)
Q Consensus 659 ~~~~~~~~~~~e~g~p---~~~~~~~~l~------------~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~ 723 (789)
.... ...+.... .......... ..+|....+. ...||+||+||++|..+ .
T Consensus 190 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~d~---------~~~Pp~li~~g~~D~l~--~ 254 (308)
T d1u4na_ 190 HPPA----SIEENAEGYLLTGGMSLWFLDQYLNSLEELTHPWFSPVLYPDL---------SGLPPAYIATAQYDPLR--D 254 (308)
T ss_dssp SCCH----HHHHTSSSSSSCHHHHHHHHHHHCSSGGGGGCTTTCGGGCSCC---------TTCCCEEEEEEEECTTH--H
T ss_pred cccc----hhhhccccccccchhhhhhhhcccCccccccchhhhhhhchhh---------cCCCCeeEEecCcCCch--H
Confidence 1100 00011100 0000000111 1122222222 13689999999999665 5
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCC---chhhHHHHHHHHHHHHHHHh
Q 003878 724 HSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGL---PTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 724 ~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~---~~~~~~~~~~~~~~fl~~~l 783 (789)
++.+|+++|++. |+++++.++++++|++.. ...+..+.+.++.+||++.|
T Consensus 255 ~~~~~~~~L~~~----------G~~v~~~~~~g~~Hgf~~~~~~~~~a~~~~~~~~~fl~~~L 307 (308)
T d1u4na_ 255 VGKLYAEALNKA----------GVKVEIENFEDLIHGFAQFYSLSPGATKALVRIAEKLRDAL 307 (308)
T ss_dssp HHHHHHHHHHHT----------TCCEEEEEEEEEETTGGGGTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC----------CCCEEEEEECCCCEeCcccCCCCHHHHHHHHHHHHHHHHhh
Confidence 899999999998 999999999999998642 12234567788889998876
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=99.80 E-value=2.2e-19 Score=184.22 Aligned_cols=185 Identities=12% Similarity=0.085 Sum_probs=138.9
Q ss_pred EEEEEecCCCCCCCCccEEEEEcCCCCccCCC-CCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHH
Q 003878 523 PMFIVSKKNIKLDGSHPCLLYGYGGFNISVTP-SFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDD 601 (789)
Q Consensus 523 ~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~-~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D 601 (789)
.+-||.|++ .+.|+||++|||++..... .+.. ....|.++||+|+.+|||.+++.. .....+|
T Consensus 51 ~lDiy~P~~----~~~P~vv~iHGG~w~~g~~~~~~~-~a~~l~~~G~~Vv~~~YRl~p~~~-----------~p~~~~d 114 (261)
T d2pbla1 51 KFDLFLPEG----TPVGLFVFVHGGYWMAFDKSSWSH-LAVGALSKGWAVAMPSYELCPEVR-----------ISEITQQ 114 (261)
T ss_dssp EEEEECCSS----SCSEEEEEECCSTTTSCCGGGCGG-GGHHHHHTTEEEEEECCCCTTTSC-----------HHHHHHH
T ss_pred EEEEeccCC----CCCCeEEEECCCCCccCChhHhhh-HHHHHhcCCceeeccccccccccc-----------CchhHHH
Confidence 445678875 4679999999998765543 3333 344555699999999999876532 2345799
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCC------CceeEEEecCCcccccccccccCCccchhhcCCCC
Q 003878 602 FISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRP------DLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSE 675 (789)
Q Consensus 602 ~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~p------d~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~ 675 (789)
+.++++|+.++. ++||+|+|+|+||+|++++++..+ ..+++++...|+.++........ ...++.
T Consensus 115 ~~~a~~~~~~~~---~~rI~l~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-- 185 (261)
T d2pbla1 115 ISQAVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRTSM----NEKFKM-- 185 (261)
T ss_dssp HHHHHHHHHHHS---CSCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGSTT----HHHHCC--
T ss_pred HHHHHHHHHhcc---cCceEEEEcchHHHHHHHHhcCcccccchhhchhhhhccccccccchhhhhhh----cccccC--
Confidence 999999999874 589999999999999988876543 25889999999988754432111 112222
Q ss_pred cHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeC
Q 003878 676 EEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIER 755 (789)
Q Consensus 676 ~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~ 755 (789)
+++. ..+.||+.++... .||+||+||++|..++..|+.+|+++|+. ...+++
T Consensus 186 ~~~~---~~~~SP~~~~~~~----------~~P~li~~G~~D~~~~~~qs~~~~~~l~~---------------~~~~~~ 237 (261)
T d2pbla1 186 DADA---AIAESPVEMQNRY----------DAKVTVWVGGAERPAFLDQAIWLVEAWDA---------------DHVIAF 237 (261)
T ss_dssp CHHH---HHHTCGGGCCCCC----------SCEEEEEEETTSCHHHHHHHHHHHHHHTC---------------EEEEET
T ss_pred CHHH---HHHhCchhhcccC----------CCeEEEEEecCCCchHHHHHHHHHHHhCC---------------CceEeC
Confidence 3333 4678999999886 79999999999999999999999998864 356789
Q ss_pred CCCcC
Q 003878 756 KAGHG 760 (789)
Q Consensus 756 ~~gH~ 760 (789)
+++|.
T Consensus 238 ~~~HF 242 (261)
T d2pbla1 238 EKHHF 242 (261)
T ss_dssp TCCTT
T ss_pred CCCch
Confidence 99994
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=99.80 E-value=4.5e-19 Score=192.50 Aligned_cols=150 Identities=15% Similarity=0.177 Sum_probs=117.3
Q ss_pred CCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCC--Ccc--CCCCCCH----HHHHHHHcCCeEEEEEe
Q 003878 504 SEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF--NIS--VTPSFSV----SRTILMRHLGAVFCIAN 575 (789)
Q Consensus 504 ~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~--~~~--~~~~~~~----~~~~~l~~~G~~v~~~~ 575 (789)
..++.+.+.++.+|| ++|.+.|++|++ .++.|+||..|+-. +.. ....+.. ....+++++||+|+++|
T Consensus 20 ~~~~~~~v~i~~rDG-~~L~~~v~~P~~---~~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d 95 (381)
T d1mpxa2 20 NDYIKREVMIPMRDG-VKLHTVIVLPKG---AKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQD 95 (381)
T ss_dssp CSEEEEEEEEECTTS-CEEEEEEEEETT---CCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEE
T ss_pred cCceEEEEEEECCCC-CEEEEEEEEeCC---CCCccEEEEEccCCCCCcccccccccccccchhHHHHHHhCCCEEEEEe
Confidence 456778899999999 999999999987 47899999987521 111 1111110 11244556999999999
Q ss_pred ecCCCCCChhHHhccc-----ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecC
Q 003878 576 IRGGGEYGEEWHKGGA-----LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV 650 (789)
Q Consensus 576 ~RG~g~~g~~~~~~~~-----~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~ 650 (789)
+||.|..+..|...+. .....+...|+.++++||.++...+.+||+++|+|+||++++++|++.|..++|+|+.+
T Consensus 96 ~RG~g~S~G~~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~a~~~~~~l~a~v~~~ 175 (381)
T d1mpxa2 96 VRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPES 175 (381)
T ss_dssp CTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTSCCTTEEEEEEES
T ss_pred cCccCCCCCceeccchhhhhcccchhHHHHHHHHHHHHHhhcCCcCccceeeecccHHHHHHHHHHhccccccceeeeec
Confidence 9998887766544322 22334678999999999999988899999999999999999999999999999999999
Q ss_pred Ccccccc
Q 003878 651 GVMDMLR 657 (789)
Q Consensus 651 p~~d~~~ 657 (789)
|+.|...
T Consensus 176 ~~~d~~~ 182 (381)
T d1mpxa2 176 PMIDGWM 182 (381)
T ss_dssp CCCCTTT
T ss_pred ccccccc
Confidence 9998754
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=99.80 E-value=8.4e-19 Score=180.06 Aligned_cols=208 Identities=15% Similarity=0.036 Sum_probs=150.8
Q ss_pred CcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChh
Q 003878 506 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 585 (789)
Q Consensus 506 ~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~ 585 (789)
+....+.+....+.-...+.|++|++. .+++.|+||++||+.+.... +. .+...|+++||+|+.+|++|.++....
T Consensus 21 ~~~~~~~~~~~~~~g~~~~~ly~P~~~-~~g~~P~Vv~~HG~~g~~~~--~~-~~a~~lA~~Gy~V~~~d~~~~~~~~~~ 96 (260)
T d1jfra_ 21 YATSQTSVSSLVASGFGGGTIYYPTST-ADGTFGAVVISPGFTAYQSS--IA-WLGPRLASQGFVVFTIDTNTTLDQPDS 96 (260)
T ss_dssp SCEEEEEECTTTCSSSCCEEEEEESCC-TTCCEEEEEEECCTTCCGGG--TT-THHHHHHTTTCEEEEECCSSTTCCHHH
T ss_pred cceeEEEeccCCcCcccCEEEEEcCCC-CCCCccEEEEECCCCCCHHH--HH-HHHHHHHhCCCEEEEEeeCCCcCCchh
Confidence 444555554322201234678999863 35789999999998765443 23 245667779999999999986654322
Q ss_pred HHhcccccCCcchHHHHHHHHHHHHHc----CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccc
Q 003878 586 WHKGGALAKKQNCFDDFISASEYLISA----GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKF 661 (789)
Q Consensus 586 ~~~~~~~~~~~~~~~D~~~~~~~L~~~----~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~ 661 (789)
...|+.+++++|.+. +.+|++||+++|+|+||.+++.++...| +++|+|+.+|....
T Consensus 97 ------------~~~d~~~~~~~l~~~~~~~~~vD~~rI~v~G~S~GG~~al~aa~~~~-~~~A~v~~~~~~~~------ 157 (260)
T d1jfra_ 97 ------------RGRQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRT-SLKAAIPLTGWNTD------ 157 (260)
T ss_dssp ------------HHHHHHHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCT-TCSEEEEESCCCSC------
T ss_pred ------------hHHHHHHHHHHHHhhhhhhccccccceEEEeccccchHHHHHHhhhc-cchhheeeeccccc------
Confidence 246888899998875 5689999999999999999999999866 67888877764211
Q ss_pred cCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCC
Q 003878 662 TIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLE 741 (789)
Q Consensus 662 ~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~ 741 (789)
....+. .+|+|++||++|..||+.+..+++.++...
T Consensus 158 ----------------------------~~~~~~----------~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~------ 193 (260)
T d1jfra_ 158 ----------------------------KTWPEL----------RTPTLVVGADGDTVAPVATHSKPFYESLPG------ 193 (260)
T ss_dssp ----------------------------CCCTTC----------CSCEEEEEETTCSSSCTTTTHHHHHHHSCT------
T ss_pred ----------------------------cccccc----------ccceeEEecCCCCCCCHHHHHHHHHHhccc------
Confidence 111222 679999999999999998755555444433
Q ss_pred CCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCC
Q 003878 742 NSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 742 ~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
+.+.++.++++++|++...... .....+++||+++|+.+
T Consensus 194 ----~~~~~~~~i~ga~H~~~~~~~~--~~~~~~~~wl~~~L~~d 232 (260)
T d1jfra_ 194 ----SLDKAYLELRGASHFTPNTSDT--TIAKYSISWLKRFIDSD 232 (260)
T ss_dssp ----TSCEEEEEETTCCTTGGGSCCH--HHHHHHHHHHHHHHSCC
T ss_pred ----CCCEEEEEECCCccCCCCCChH--HHHHHHHHHHHHHhcCc
Confidence 7889999999999997655553 45557889999999765
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=99.79 E-value=4.9e-19 Score=189.86 Aligned_cols=243 Identities=15% Similarity=0.111 Sum_probs=165.7
Q ss_pred EEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCC--ccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChh
Q 003878 508 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFN--ISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 585 (789)
Q Consensus 508 ~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~--~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~ 585 (789)
.+.+.++.+|| ++|.+.|++|++ .++.|+||+.||..+ ......+......++. +||+|+++|.||.|+.+..
T Consensus 5 ~~~v~ipmrDG-v~L~~~vy~P~~---~~~~P~il~~~pyg~~~~~~~~~~~~~~~~~a~-~GY~vv~~d~RG~g~S~G~ 79 (347)
T d1ju3a2 5 ASNVMVPMRDG-VRLAVDLYRPDA---DGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVR-DGYAVVIQDTRGLFASEGE 79 (347)
T ss_dssp EEEEEEECTTS-CEEEEEEEEECC---SSCEEEEEEEESSCTTCCHHHHTTSCCTHHHHH-TTCEEEEEECTTSTTCCSC
T ss_pred EeCeEEECCCC-CEEEEEEEEcCC---CCCEEEEEEEcCCCCccccCcCcccHHHHHHHH-CCCEEEEEeeCCccccCCc
Confidence 45699999999 999999999986 578999999987322 2112223322334555 9999999999999987755
Q ss_pred HHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccC-C
Q 003878 586 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTI-G 664 (789)
Q Consensus 586 ~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~-~ 664 (789)
+ ....+...|..++++|+.++.+.| .||+++|.|+||+++.++|++.|..++|+|..++..|+........ +
T Consensus 80 ~------~~~~~~~~d~~d~i~w~~~q~~~~-grVg~~G~SygG~~~~~~A~~~~~~l~aiv~~~~~~d~~~~~~~~~gg 152 (347)
T d1ju3a2 80 F------VPHVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGG 152 (347)
T ss_dssp C------CTTTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCTTC
T ss_pred c------ccccchhhhHHHHHHHHHhhccCC-cceEeeeccccccchhhhhhcccccceeeeeccccchhhhhhhhhcCC
Confidence 4 233455679999999999999987 6999999999999999999999999999999999998743211000 0
Q ss_pred c-------cchhh--------cCC--CCc-------------------------------------------HHHHHHHH
Q 003878 665 H-------AWVSD--------FGC--SEE-------------------------------------------EEEFYWLI 684 (789)
Q Consensus 665 ~-------~~~~e--------~g~--p~~-------------------------------------------~~~~~~l~ 684 (789)
. .|... ... +.+ +..-+++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 232 (347)
T d1ju3a2 153 ALSVEALLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPDNDESWQ 232 (347)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTSSSCCTTHHHHHHHHHHHHHCHHHHHTCSSTTCCTTHHHHCTHHHHTTTTCCSCCHHHH
T ss_pred ccchhhHHHHHHHhhccccccccccCcchhhHHhhhhhhcccchhhhccCccccccccccchhhHHHHhhhcccchhhhh
Confidence 0 00000 000 000 00001234
Q ss_pred hcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCc
Q 003878 685 KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLP 764 (789)
Q Consensus 685 ~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~ 764 (789)
..+|...+.++ .+|+|+++|..|..++ .+.+++.+++. +.+..+.+-|. +|+....
T Consensus 233 ~~~~~~~~~~i----------~vP~L~i~G~~D~~~~--~~~~~~~~~~~-----------~~~~~liigpw-~H~~~~~ 288 (347)
T d1ju3a2 233 SISLFERLGGL----------ATPALITAGWYDGFVG--ESLRTFVAVKD-----------NADARLVVGPW-SHSNLTG 288 (347)
T ss_dssp TTCCHHHHTTC----------CCCEEEEEEEECTTHH--HHHHHHHHHTT-----------TSCEEEEEEEE-ESSCCSS
T ss_pred cCCHHHHhhcC----------CCCEEEeccccCCCcc--hhHHHHHHhhc-----------cCCceEEEcCc-cccCccc
Confidence 44566666665 7899999999997654 46777777764 45667777653 4543210
Q ss_pred -----------hhhHHHHHHHHHHHHHHHhCCC
Q 003878 765 -----------TQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 765 -----------~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
.....+.....++||+++|+..
T Consensus 289 ~~~~~~~g~~~~~~~~~~~~~~l~wfD~~LKg~ 321 (347)
T d1ju3a2 289 RNADRKFGIAATYPIQEATTMHKAFFDRHLRGE 321 (347)
T ss_dssp EETTEECCGGGSCCHHHHHHHHHHHHHHHTSCC
T ss_pred ccCCCCCCccccccHHHHHHHHHHHHHHHhCCC
Confidence 1112456678899999999753
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=99.79 E-value=2.8e-19 Score=180.57 Aligned_cols=211 Identities=15% Similarity=0.126 Sum_probs=147.7
Q ss_pred EEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHH
Q 003878 508 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWH 587 (789)
Q Consensus 508 ~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~ 587 (789)
.|.|++++.|| .++++++..|++ ++.|+||++|+++|.... ...+...|+++||+|+++|+.+.++.+....
T Consensus 3 ~e~v~~~~~dg-~~~~a~~~~P~~----~~~P~vl~~h~~~G~~~~---~~~~a~~lA~~Gy~vl~pd~~~~~~~~~~~~ 74 (233)
T d1dina_ 3 TEGISIQSYDG-HTFGALVGSPAK----APAPVIVIAQEIFGVNAF---MRETVSWLVDQGYAAVCPDLYARQAPGTALD 74 (233)
T ss_dssp CTTCCEECTTS-CEECEEEECCSS----SSEEEEEEECCTTBSCHH---HHHHHHHHHHTTCEEEEECGGGGTSTTCBCC
T ss_pred ceEEEEEcCCC-CEEEEEEECCCC----CCceEEEEeCCCCCCCHH---HHHHHHHHHhcCCcceeeeeccCCCcCcccC
Confidence 35678999999 999999999975 689999999988775321 1234556667999999999887665443211
Q ss_pred hc-------c----cccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccc
Q 003878 588 KG-------G----ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML 656 (789)
Q Consensus 588 ~~-------~----~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~ 656 (789)
.. . ..........|+.+++++|.+.+. +.+||+++|+|+||.++..++.. +. +.++++..|..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~d~~aa~~~l~~~~~-~~~~i~~~G~s~Gg~~a~~~a~~-~~-~~~~~~~~~~~--- 148 (233)
T d1dina_ 75 PQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPY-SNGKVGLVGYCLGGALAFLVAAK-GY-VDRAVGYYGVG--- 148 (233)
T ss_dssp TTSHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSTT-EEEEEEEEEETHHHHHHHHHHHH-TC-SSEEEEESCSC---
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCC-CCCceEEEEecccccceeecccc-cc-cceeccccccc---
Confidence 10 0 011123456899999999988875 55899999999999999998877 43 45555433311
Q ss_pred ccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhh
Q 003878 657 RYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVL 736 (789)
Q Consensus 657 ~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~ 736 (789)
.. ++...+.++ ..|+|++||++|++||+++..++.+.++ .
T Consensus 149 ------------------~~----------~~~~~~~~i----------~~Pvl~~~G~~D~~vp~e~~~~~~~~~~-~- 188 (233)
T d1dina_ 149 ------------------LE----------KQLNKVPEV----------KHPALFHMGGQDHFVPAPSRQLITEGFG-A- 188 (233)
T ss_dssp ------------------GG----------GGGGGGGGC----------CSCEEEEEETTCTTSCHHHHHHHHHHHT-T-
T ss_pred ------------------cc----------cchhhhhcc----------CCcceeeecccccCCCHHHHHHHHHHHh-c-
Confidence 00 111222233 5799999999999999998887777665 3
Q ss_pred ccCCCCCCCCCcEEEEEeCCCCcCCCCchh------hHHHHHHHHHHHHHH
Q 003878 737 CTSLENSPQTNPIIGRIERKAGHGVGLPTQ------KMIDEAADRYGFMAK 781 (789)
Q Consensus 737 ~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~------~~~~~~~~~~~fl~~ 781 (789)
+.++++++|++++|+|..+.. ...+...++++||..
T Consensus 189 ---------~~~~~~~~y~ga~HgF~~~~~~~y~~~aa~~a~~r~~~ffa~ 230 (233)
T d1dina_ 189 ---------NPLLQVHWYEEAGHSFARTSSSGYVASAAALANERTLDFLAP 230 (233)
T ss_dssp ---------CTTEEEEEETTCCTTTTCTTSTTCCHHHHHHHHHHHHHHHGG
T ss_pred ---------CCCEEEEEECCCCcCCCCCCCccCCHHHHHHHHHHHHHHHHc
Confidence 678999999999999854221 122345677888853
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=99.77 E-value=6.2e-18 Score=167.59 Aligned_cols=207 Identities=14% Similarity=0.038 Sum_probs=147.0
Q ss_pred EEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcC--CCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChh
Q 003878 508 VHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYG--GFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 585 (789)
Q Consensus 508 ~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hG--g~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~ 585 (789)
.+.+.+..++| +|.+.+..|+... ..+.+++|++|+ ++|.++...+.......|+++||.|+.+|+||.|+....
T Consensus 8 ~~~l~i~gp~G--~l~~~~~~p~~~~-~~~~~~~vl~Hph~~~GG~~~~~~~~~la~~l~~~G~~vlrfd~RG~G~S~g~ 84 (218)
T d2fuka1 8 SAALTLDGPVG--PLDVAVDLPEPDV-AVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGS 84 (218)
T ss_dssp CEEEEEEETTE--EEEEEEECCCTTS-CCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCSC
T ss_pred ceEEEEeCCCc--cEEEEEEcCCCCC-CCCCcEEEEECCCCCCCcCCCChHHHHHHHHHHHcCCeEEEeecCCCccCCCc
Confidence 36678888888 6888888886532 345577777774 333333322222345667779999999999998765432
Q ss_pred HHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCc
Q 003878 586 WHKGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGH 665 (789)
Q Consensus 586 ~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~ 665 (789)
........+|+.++++|+.++. +.++++++|+|+||.+++.++.+.+ .+++|+.+|..+...+
T Consensus 85 ------~~~~~~~~~D~~a~~~~~~~~~--~~~~v~l~G~S~Gg~va~~~a~~~~--~~~lil~ap~~~~~~~------- 147 (218)
T d2fuka1 85 ------FDHGDGEQDDLRAVAEWVRAQR--PTDTLWLAGFSFGAYVSLRAAAALE--PQVLISIAPPAGRWDF------- 147 (218)
T ss_dssp ------CCTTTHHHHHHHHHHHHHHHHC--TTSEEEEEEETHHHHHHHHHHHHHC--CSEEEEESCCBTTBCC-------
T ss_pred ------cCcCcchHHHHHHHHHHHhhcc--cCceEEEEEEcccchhhhhhhcccc--cceEEEeCCcccchhh-------
Confidence 2233456789999999999873 4579999999999999988877632 5688887775432110
Q ss_pred cchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCC
Q 003878 666 AWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQ 745 (789)
Q Consensus 666 ~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~ 745 (789)
++ . . ...|+|++||++|..||++++.++++++
T Consensus 148 ---------------------~~---~-~----------~~~P~Lvi~G~~D~~vp~~~~~~l~~~~------------- 179 (218)
T d2fuka1 148 ---------------------SD---V-Q----------PPAQWLVIQGDADEIVDPQAVYDWLETL------------- 179 (218)
T ss_dssp ---------------------TT---C-C----------CCSSEEEEEETTCSSSCHHHHHHHHTTC-------------
T ss_pred ---------------------hc---c-c----------cccceeeEecCCCcCcCHHHHHHHHHHc-------------
Confidence 00 0 1 2469999999999999999988886544
Q ss_pred CCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 746 TNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 746 ~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
..+.++.++++++|.|..... +....+.+|+.++|..
T Consensus 180 ~~~~~l~~i~ga~H~f~~~~~---~l~~~~~~~v~~~l~~ 216 (218)
T d2fuka1 180 EQQPTLVRMPDTSHFFHRKLI---DLRGALQHGVRRWLPA 216 (218)
T ss_dssp SSCCEEEEETTCCTTCTTCHH---HHHHHHHHHHGGGCSS
T ss_pred cCCceEEEeCCCCCCCCCCHH---HHHHHHHHHHHHhcCC
Confidence 335688999999999875332 4556788899888764
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.77 E-value=8.8e-19 Score=182.74 Aligned_cols=252 Identities=14% Similarity=0.036 Sum_probs=176.1
Q ss_pred CCcEEEEEEecC-CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCH--HHHHHHHcCCeEEEEEeecCCCC
Q 003878 505 EFHVHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV--SRTILMRHLGAVFCIANIRGGGE 581 (789)
Q Consensus 505 ~~~~~~~~~~s~-dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~--~~~~~l~~~G~~v~~~~~RG~g~ 581 (789)
.+.++.+.+.|+ .| .+|++.|+.| .++.|+|+++||+.+......|.. ....++++.|+++++++..+.+.
T Consensus 6 ~~~v~~~~~~s~~~~-r~~~~~v~~p-----~~~~Pvl~llhG~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 79 (288)
T d1sfra_ 6 GLPVEYLQVPSPSMG-RDIKVQFQSG-----GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSF 79 (288)
T ss_dssp TCCCEEEEEEETTTT-EEEEEEEECC-----STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCT
T ss_pred CCEEEEEEEECCCCC-cEEEEEEeCC-----CCCceEEEEcCCCCCCCcchhhhhhccHHHHHHhCCCEEEEeccCCCCC
Confidence 444566777664 68 8999888765 368999999999755433322221 24678888999999999887766
Q ss_pred CChhHHhcc-cccCCcchHHHH--HHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc
Q 003878 582 YGEEWHKGG-ALAKKQNCFDDF--ISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY 658 (789)
Q Consensus 582 ~g~~~~~~~-~~~~~~~~~~D~--~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~ 658 (789)
++..+.... ....+...++++ .+.+.+|.++..+|++|++|+|+|+||++++.+++++||+|+++++.+|.+++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~S~GG~~A~~~a~~~pd~f~av~~~Sg~~~~~~~ 159 (288)
T d1sfra_ 80 YSDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQA 159 (288)
T ss_dssp TCBCSSCEEETTEEECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTST
T ss_pred CccccCcccccccccchhHHHHHHHHhHHHHHHhcCCCCCceEEEEEccHHHHHHHHHHhccccccEEEEecCccccccc
Confidence 554433221 112222334443 45677888887899999999999999999999999999999999999999886544
Q ss_pred cccc---------CCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCc-------
Q 003878 659 HKFT---------IGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVP------- 722 (789)
Q Consensus 659 ~~~~---------~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~------- 722 (789)
.... ........+|.+..+ .+.+++|+.++++.. ...+++++.+|..|..++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~p~~~~~~~~-------~~~~~~~~~~G~~d~~~~~~~~~~~~ 228 (288)
T d1sfra_ 160 MGPTLIGLAMGDAGGYKASDMWGPKEDP----AWQRNDPLLNVGKLI-------ANNTRVWVYCGNGKPSDLGGNNLPAK 228 (288)
T ss_dssp THHHHHHHHHHHTTSCCHHHHHCSTTST----HHHHSCTTTTHHHHH-------HHTCEEEEECCCSCCBTTBCCSHHHH
T ss_pred ccchhhhhhhhhcccccHhhhcCCcchh----hhHhcCHHHHHHHhh-------hcCCeEEEEeCCCCCCCccccccccc
Confidence 3111 000011123444332 246788888776420 1257899999999987774
Q ss_pred -------HHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCC-CcCCCCchhhHHHHHHHHHHHHHHHhCCCC
Q 003878 723 -------LHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKA-GHGVGLPTQKMIDEAADRYGFMAKMLGASW 787 (789)
Q Consensus 723 -------~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~-gH~~~~~~~~~~~~~~~~~~fl~~~l~~~~ 787 (789)
.++++|.++|++. |.+..+..++++ +|... . ..+.+.+.+.||.+.||..+
T Consensus 229 ~~e~~~~~~~~~l~~~l~~~----------g~~~~~~~~~~~G~H~w~---~-w~~~l~~~l~~l~~alg~~~ 287 (288)
T d1sfra_ 229 FLEGFVRTSNIKFQDAYNAG----------GGHNGVFDFPDSGTHSWE---Y-WGAQLNAMKPDLQRALGATP 287 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----------TCCSEEEECCSCCCSSHH---H-HHHHHHHTHHHHHHHHTCCC
T ss_pred hhHHHHHHHHHHHHHHHHHC----------CCCeEEEEECCCCccChh---H-HHHHHHHHHHHHHHhcCCCC
Confidence 5678899999988 888888888865 59752 1 23566788999999999865
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=3.5e-18 Score=172.21 Aligned_cols=227 Identities=15% Similarity=0.035 Sum_probs=145.8
Q ss_pred cEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhH
Q 003878 507 HVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEW 586 (789)
Q Consensus 507 ~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~ 586 (789)
.+|++++ .| +++....|. ++.|+||++||..+.... +. .+...|+++||+|+++|+||.|+....+
T Consensus 4 ~~~~~~l---~g---~~~~~~~p~-----~~~~~vl~lHG~~~~~~~--~~-~~~~~la~~G~~V~~~D~~g~g~s~~~~ 69 (238)
T d1ufoa_ 4 RTERLTL---AG---LSVLARIPE-----APKALLLALHGLQGSKEH--IL-ALLPGYAERGFLLLAFDAPRHGEREGPP 69 (238)
T ss_dssp EEEEEEE---TT---EEEEEEEES-----SCCEEEEEECCTTCCHHH--HH-HTSTTTGGGTEEEEECCCTTSTTSSCCC
T ss_pred EEEEEEE---CC---EEEEecCCC-----CCCeEEEEeCCCCCCHHH--HH-HHHHHHHHCCCEEEEecCCCCCCCcccc
Confidence 3455554 46 455555564 356999999997665322 22 1234455699999999999987643222
Q ss_pred HhcccccCCcch---H-HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccccc
Q 003878 587 HKGGALAKKQNC---F-DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT 662 (789)
Q Consensus 587 ~~~~~~~~~~~~---~-~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~ 662 (789)
............ . .++.++...+...+.+++++++++|+|+||++++.++.++|+...++ +..+..+....
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~S~Gg~~a~~~~~~~p~~~~~~-~~~~~~~~~~~---- 144 (238)
T d1ufoa_ 70 PSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVL-AFIGSGFPMKL---- 144 (238)
T ss_dssp CCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEETHHHHHHHHHHHTTCCCSCEE-EESCCSSCCCC----
T ss_pred cccccchhhhhhhhhHHhHHHHHHHHhhhccccCCceEEEEEecccHHHHHHHHhcCcchhhee-eeeeecccccc----
Confidence 111100000111 1 22222333333445678899999999999999999999988755554 43333322111
Q ss_pred CCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCC
Q 003878 663 IGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLEN 742 (789)
Q Consensus 663 ~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~ 742 (789)
.+...+..+. ...+...+|..+.... ..+|+|++||++|..||++++.+++++|++.
T Consensus 145 ------~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~P~li~~G~~D~~v~~~~~~~~~~~l~~~------- 201 (238)
T d1ufoa_ 145 ------PQGQVVEDPG-VLALYQAPPATRGEAY---------GGVPLLHLHGSRDHIVPLARMEKTLEALRPH------- 201 (238)
T ss_dssp ------CTTCCCCCHH-HHHHHHSCGGGCGGGG---------TTCCEEEEEETTCTTTTHHHHHHHHHHHGGG-------
T ss_pred ------cccccccccc-ccchhhhhhhhhhhhh---------cCCCeEEEEcCCCCccCHHHHHHHHHHHHhc-------
Confidence 1222222333 2334566777666554 4679999999999999999999999999987
Q ss_pred CCCCC--cEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 743 SPQTN--PIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 743 ~~~~~--~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
+. .+.+.+++++||.... +.+....+||.++|.
T Consensus 202 ---~~~~~~~~~~~~g~gH~~~~------~~~~~~~~f~~~~l~ 236 (238)
T d1ufoa_ 202 ---YPEGRLARFVEEGAGHTLTP------LMARVGLAFLEHWLE 236 (238)
T ss_dssp ---CTTCCEEEEEETTCCSSCCH------HHHHHHHHHHHHHHH
T ss_pred ---CCCceEEEEEECCCCCccCH------HHHHHHHHHHHHHhc
Confidence 54 4788999999998742 345567889998874
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=99.77 E-value=5.3e-18 Score=178.03 Aligned_cols=234 Identities=12% Similarity=0.046 Sum_probs=152.4
Q ss_pred EEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCCh-hHHhc
Q 003878 511 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGE-EWHKG 589 (789)
Q Consensus 511 ~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~-~~~~~ 589 (789)
-.++..|| .+|++|.+.|++.. .++.|+||++||..+.. ..|.. +...|.++||.|+.+|+||.++... .+...
T Consensus 7 h~~~~~dg-~~l~~w~~~p~~~~-~~~~~~Vvi~HG~~~~~--~~~~~-~a~~L~~~G~~Vi~~D~rGh~G~S~g~~~~~ 81 (302)
T d1thta_ 7 HVLRVNNG-QELHVWETPPKENV-PFKNNTILIASGFARRM--DHFAG-LAEYLSTNGFHVFRYDSLHHVGLSSGSIDEF 81 (302)
T ss_dssp EEEEETTT-EEEEEEEECCCTTS-CCCSCEEEEECTTCGGG--GGGHH-HHHHHHTTTCCEEEECCCBCC--------CC
T ss_pred eEEEcCCC-CEEEEEEecCcCCC-CCCCCEEEEeCCCcchH--HHHHH-HHHHHHHCCCEEEEecCCCCCCCCCCcccCC
Confidence 34677899 99999999998743 35789999999964443 23443 5667777999999999999533221 11111
Q ss_pred ccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccC------
Q 003878 590 GALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTI------ 663 (789)
Q Consensus 590 ~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~------ 663 (789)
......+|+.+++++|.+++ +++|+++|+|+||.+++.++.. ..++++|+.+|+.++..+.....
T Consensus 82 ----~~~~~~~dl~~vi~~l~~~~---~~~i~lvG~SmGG~ial~~A~~--~~v~~li~~~g~~~~~~~~~~~~~~~~~~ 152 (302)
T d1thta_ 82 ----TMTTGKNSLCTVYHWLQTKG---TQNIGLIAASLSARVAYEVISD--LELSFLITAVGVVNLRDTLEKALGFDYLS 152 (302)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTT---CCCEEEEEETHHHHHHHHHTTT--SCCSEEEEESCCSCHHHHHHHHHSSCGGG
T ss_pred ----CHHHHHHHHHHHHHhhhccC---CceeEEEEEchHHHHHHHHhcc--cccceeEeecccccHHHHHHHHHhhccch
Confidence 11123578999999998874 5689999999999999888765 34789999999887754321000
Q ss_pred -Cccchhhc----CCCCcHHHH-HHHHhc------CcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHH
Q 003878 664 -GHAWVSDF----GCSEEEEEF-YWLIKY------SPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLAT 731 (789)
Q Consensus 664 -~~~~~~e~----g~p~~~~~~-~~l~~~------sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~ 731 (789)
......+. +.......+ ...... ++...+.++ ..|+|++||++|..||++++.++++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i----------~~PvLii~G~~D~~V~~~~~~~l~~~ 222 (302)
T d1thta_ 153 LPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANT----------SVPLIAFTANNDDWVKQEEVYDMLAH 222 (302)
T ss_dssp SCGGGCCSEEEETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTC----------CSCEEEEEETTCTTSCHHHHHHHHTT
T ss_pred hhhhhccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHhhc----------CCCEEEEEeCCCCccCHHHHHHHHHh
Confidence 00000000 000111111 011111 133345554 78999999999999999999999887
Q ss_pred HHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 732 MQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 732 L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
+. +...++++++++||............+..+..++.
T Consensus 223 i~------------s~~~kl~~~~g~~H~l~e~~~~~~~~~~~~~~~~~ 259 (302)
T d1thta_ 223 IR------------TGHCKLYSLLGSSHDLGENLVVLRNFYQSVTKAAI 259 (302)
T ss_dssp CT------------TCCEEEEEETTCCSCTTSSHHHHHHHHHHHHHHHH
T ss_pred CC------------CCCceEEEecCCCcccccChHHHHHHHHHHHHHHh
Confidence 65 34578999999999987655433344555555543
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.76 E-value=2e-17 Score=180.86 Aligned_cols=252 Identities=15% Similarity=0.076 Sum_probs=176.9
Q ss_pred CCCCCCCcEEEEEEecC-----CCce--EEEEEEEecCCCCCCCCccEEEEEcCCCCc----------------------
Q 003878 500 GFDRSEFHVHQVFVPSK-----DGST--KIPMFIVSKKNIKLDGSHPCLLYGYGGFNI---------------------- 550 (789)
Q Consensus 500 ~~~~~~~~~~~~~~~s~-----dg~~--~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~---------------------- 550 (789)
-|+...+..|.+++.+. || + +|.+.|++|++ .++.|+||..+--+..
T Consensus 15 ~~~~~~~~re~v~v~~~~dt~rDG-~~d~l~~di~rP~~---~~k~Pvil~~sPY~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (405)
T d1lnsa3 15 TFDSSLLEREVLWVESPVDSEQRG-ENDLIKIQIIRPKS---TEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTS 90 (405)
T ss_dssp CSCGGGCEEEEEEEECSCCTTCSS-SCCEEEEEEEECCC---SSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCS
T ss_pred eecCCCceEeEEEEeCCCCCCCCC-CEeEEEEEEEccCC---CCCceEEEEeCCcCCCCccccccccccccccccccccc
Confidence 46666677788888765 89 8 59999999987 3689999966432100
Q ss_pred ----------------------------cCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHH
Q 003878 551 ----------------------------SVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDF 602 (789)
Q Consensus 551 ----------------------------~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~ 602 (789)
.....+.....+++..+||+|+.+|.||.|..+..|... .....+|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GYavv~~D~RG~g~S~G~~~~~-----~~~e~~D~ 165 (405)
T d1lnsa3 91 HEIHVEQKLPQKLSAKAKELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQTSG-----DYQQIYSM 165 (405)
T ss_dssp EECCCCCCCCCCCCCCCCCCCEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCCCTT-----SHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccchHHHHhCCCEEEEECCCCCCCCCCccccC-----ChhhhhhH
Confidence 000111112335555699999999999999877665432 33467899
Q ss_pred HHHHHHHHHcCCCC--------------CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccccc-----C
Q 003878 603 ISASEYLISAGYTQ--------------SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT-----I 663 (789)
Q Consensus 603 ~~~~~~L~~~~~~d--------------~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~-----~ 663 (789)
.++++||..+...+ -.||+++|.|+||++..++|++.|..++|+|..+++.|+....... .
T Consensus 166 ~~~IeWl~~~~~~~~~~~~~~~~~q~WsnGkVGm~G~SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G~~~~~ 245 (405)
T d1lnsa3 166 TAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSP 245 (405)
T ss_dssp HHHHHHHTTSSCEESSTTCCCEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCC
T ss_pred HHHHHHHHhcccccccccccccccccccCCeeEEEecCHHHHHHHHHHhcCCccceEEEecCccccHHHHhhcCCccccc
Confidence 99999998653322 2589999999999999999999999999999999999975432100 0
Q ss_pred Cccch------------------------------------hhcC-CCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCC
Q 003878 664 GHAWV------------------------------------SDFG-CSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQY 706 (789)
Q Consensus 664 ~~~~~------------------------------------~e~g-~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~ 706 (789)
...|. .+.. .+.. -+++.+.+|..+++++ .
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~w~~~s~~~~~~~I----------~ 312 (405)
T d1lnsa3 246 GGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLAEMTAALDRKSGDY---NQFWHDRNYLINTDKV----------K 312 (405)
T ss_dssp TTCTTCCHHHHHHHHCGGGGSHHHHHHHHHHHHHHHHHHHHHHCTTTCCC---CHHHHTTBGGGGGGGC----------C
T ss_pred cchhhhhhhhhhccccccccccchhhhchhhhhhccchhhhhhhhccccc---hhhhhhcChhhhhhcC----------C
Confidence 00000 0000 0111 1335677888888887 7
Q ss_pred CeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCC
Q 003878 707 PSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 707 pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
+|+|+++|..|..|++.++.+++++|+. +.+..|.+.| .+|....... ..+....+++||+++|+..
T Consensus 313 vP~L~i~Gw~D~~v~~~~~~~~y~al~~-----------~~~~~Lilgp-w~H~~~~~~~-~~d~~~~~~~wFD~~LkG~ 379 (405)
T d1lnsa3 313 ADVLIVHGLQDWNVTPEQAYNFWKALPE-----------GHAKHAFLHR-GAHIYMNSWQ-SIDFSETINAYFVAKLLDR 379 (405)
T ss_dssp SEEEEEEETTCCSSCTHHHHHHHHHSCT-----------TCCEEEEEES-CSSCCCTTBS-SCCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEeccCCCCCHHHHHHHHHHHHh-----------CCCcEEEEeC-CCCCCCcccc-cchHHHHHHHHHHHHhCCC
Confidence 8999999999999999999999999864 5677888876 6897543222 1345667889999999653
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=99.73 E-value=5.8e-17 Score=176.04 Aligned_cols=151 Identities=18% Similarity=0.193 Sum_probs=118.3
Q ss_pred CCCCcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCC----CccCCCCCCH-----HHHHHHHcCCeEEEE
Q 003878 503 RSEFHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF----NISVTPSFSV-----SRTILMRHLGAVFCI 573 (789)
Q Consensus 503 ~~~~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~----~~~~~~~~~~-----~~~~~l~~~G~~v~~ 573 (789)
...++.+.|.++.+|| ++|.+.|+.|++ .++.|+||..|+-. .......+.. ....+++++||+|+.
T Consensus 23 ~~~~~~~~v~ipmrDG-~~L~~~v~~P~~---~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~ 98 (385)
T d2b9va2 23 QRDYIKREVMVPMRDG-VKLYTVIVIPKN---ARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVF 98 (385)
T ss_dssp CCSEEEEEEEEECTTS-CEEEEEEEEETT---CCSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEE
T ss_pred CCCCeEeEEEEECCCC-CEEEEEEEEcCC---CCceeEEEEEccCCCCCccccCCcccccccccchHHHHHHhCCcEEEE
Confidence 3456778899999999 999999999987 57899999875421 1111111111 123455569999999
Q ss_pred EeecCCCCCChhHHhccc-----ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEe
Q 003878 574 ANIRGGGEYGEEWHKGGA-----LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA 648 (789)
Q Consensus 574 ~~~RG~g~~g~~~~~~~~-----~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~ 648 (789)
+|+||.|+.+..|...+. ........+|..++++||.++...+.+||+++|+|+||++++++|.+.|+.++|++.
T Consensus 99 ~d~RG~g~S~G~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~~~~~~a~~~~~~l~a~~~ 178 (385)
T d2b9va2 99 QDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAP 178 (385)
T ss_dssp EECTTSTTCCSCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHHHHHHHHTSCCTTEEEEEE
T ss_pred EcCCcccCCCCceeeccccccccccchhhHHHHHHHHHHHHHhccCccccceeeccccHHHHHHHHHHhccCCcceEEEE
Confidence 999999988877765432 234456789999999999999877889999999999999999999999999999999
Q ss_pred cCCcccccc
Q 003878 649 HVGVMDMLR 657 (789)
Q Consensus 649 ~~p~~d~~~ 657 (789)
.++..|...
T Consensus 179 ~~~~~d~~~ 187 (385)
T d2b9va2 179 ESPMVDGWM 187 (385)
T ss_dssp EEECCCTTT
T ss_pred ecccccccc
Confidence 999888654
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=99.73 E-value=8.5e-17 Score=157.96 Aligned_cols=193 Identities=12% Similarity=0.036 Sum_probs=135.9
Q ss_pred EEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccc-cc----CCcchH
Q 003878 525 FIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA-LA----KKQNCF 599 (789)
Q Consensus 525 ~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~-~~----~~~~~~ 599 (789)
.++.|.. +++.|+||++||..+.. ..|. .+...+. .++.|+.++....+..+..|..... .. ......
T Consensus 4 ~i~~~~~---~~~~P~vi~lHG~g~~~--~~~~-~~~~~l~-~~~~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (202)
T d2h1ia1 4 HVFQKGK---DTSKPVLLLLHGTGGNE--LDLL-PLAEIVD-SEASVLSVRGNVLENGMPRFFRRLAEGIFDEEDLIFRT 76 (202)
T ss_dssp EEEECCS---CTTSCEEEEECCTTCCT--TTTH-HHHHHHH-TTSCEEEECCSEEETTEEESSCEEETTEECHHHHHHHH
T ss_pred ccCCCCC---CCCCCEEEEECCCCCCH--HHHH-HHHHHhc-cCCceeeecccccCCCCccccccCCCCCCchHHHHHHH
Confidence 3455543 46689999999965432 2333 3456677 6888888764322221111211100 00 011234
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHH
Q 003878 600 DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEE 679 (789)
Q Consensus 600 ~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~ 679 (789)
+++.+.++++.++..+|++||+++|+|+||.+++.++.++|+.++++++..|.+...
T Consensus 77 ~~~~~~i~~~~~~~~~d~~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~~----------------------- 133 (202)
T d2h1ia1 77 KELNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRR----------------------- 133 (202)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCS-----------------------
T ss_pred HHHHHHHHHHHHhccccccceeeecccccchHHHHHHHhccccccceeeecCCCCcc-----------------------
Confidence 567778888888888999999999999999999999999999999999888754310
Q ss_pred HHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCc
Q 003878 680 FYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGH 759 (789)
Q Consensus 680 ~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH 759 (789)
+...... ..+|++++||++|++||+.++.+++++|++. |.+++++.+++ ||
T Consensus 134 --------~~~~~~~----------~~~~~~i~~G~~D~~vp~~~~~~~~~~l~~~----------g~~~~~~~~~g-gH 184 (202)
T d2h1ia1 134 --------GMQLANL----------AGKSVFIAAGTNDPICSSAESEELKVLLENA----------NANVTMHWENR-GH 184 (202)
T ss_dssp --------SCCCCCC----------TTCEEEEEEESSCSSSCHHHHHHHHHHHHTT----------TCEEEEEEESS-TT
T ss_pred --------ccccccc----------ccchhhcccccCCCccCHHHHHHHHHHHHHC----------CCCEEEEEECC-CC
Confidence 0011111 2579999999999999999999999999988 89999999985 89
Q ss_pred CCCCchhhHHHHHHHHHHHHHHH
Q 003878 760 GVGLPTQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~fl~~~ 782 (789)
++.. +....+.+||.+.
T Consensus 185 ~~~~------~~~~~~~~wl~k~ 201 (202)
T d2h1ia1 185 QLTM------GEVEKAKEWYDKA 201 (202)
T ss_dssp SCCH------HHHHHHHHHHHHH
T ss_pred cCCH------HHHHHHHHHHHHh
Confidence 8742 4466789999875
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=99.71 E-value=5e-17 Score=165.93 Aligned_cols=201 Identities=14% Similarity=-0.010 Sum_probs=131.2
Q ss_pred cEEEEEEecC-CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCC----HHHHHHHHcCC----eEEEEEeec
Q 003878 507 HVHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFS----VSRTILMRHLG----AVFCIANIR 577 (789)
Q Consensus 507 ~~~~~~~~s~-dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~----~~~~~~l~~~G----~~v~~~~~R 577 (789)
..+.+.+.|. +| ++++++|++|++..+++++|+|+++||+.+........ ..........+ +.+...+..
T Consensus 21 ~~~~~~~~S~~~g-~~~~~~v~lP~~y~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (255)
T d1jjfa_ 21 QVVNISYFSTATN-STRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNTN 99 (255)
T ss_dssp EEEEEEEEETTTT-EEEEEEEEECTTCCTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECCC
T ss_pred EEEEEEEEecCCC-CEEEEEEEeCCCCCCCCCCcEEEEEecCCCChHHhhhhhHHHHHHHHHHHhhccCCcceeeecccc
Confidence 5677777774 79 99999999999988889999999999987665442211 11112222233 222222221
Q ss_pred CCCCCChhHHhcccccCCcchH-HHHHHHHHHHHHc--CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccc
Q 003878 578 GGGEYGEEWHKGGALAKKQNCF-DDFISASEYLISA--GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 654 (789)
Q Consensus 578 G~g~~g~~~~~~~~~~~~~~~~-~D~~~~~~~L~~~--~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d 654 (789)
....... ....+.. ..+.+.+.++.++ ..+|++++++.|+|+||++++.++.++|++|+++++.+|..+
T Consensus 100 ~~~~~~~--------~~~~~~~~~~~~~li~~i~~~~~~~~d~~~i~i~G~S~GG~~a~~~a~~~Pd~F~~v~~~sg~~~ 171 (255)
T d1jjfa_ 100 AAGPGIA--------DGYENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPN 171 (255)
T ss_dssp CCCTTCS--------CHHHHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCCTT
T ss_pred ccccccc--------ccccchHHHHHHHHHHHHHHhhccccccceeEeeeccchhHHHHHHHHhCCCcccEEEEEccCcC
Confidence 1111100 0001111 1222233444433 457999999999999999999999999999999999888665
Q ss_pred ccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHH
Q 003878 655 MLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQY 734 (789)
Q Consensus 655 ~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~ 734 (789)
...... .+.. +...... ..+|+++.||++|..++ ...+++++|++
T Consensus 172 ~~~~~~---------~~~~--------------~~~~~~~----------~~~~~~i~~G~~D~~~~--~~~~~~~~L~~ 216 (255)
T d1jjfa_ 172 TYPNER---------LFPD--------------GGKAARE----------KLKLLFIACGTNDSLIG--FGQRVHEYCVA 216 (255)
T ss_dssp SCCHHH---------HCTT--------------TTHHHHH----------HCSEEEEEEETTCTTHH--HHHHHHHHHHH
T ss_pred Cccccc---------cccc--------------HHHHhhc----------cCCcceEEeCCCCCCch--HHHHHHHHHHH
Confidence 321110 0000 0111111 25899999999999876 46789999999
Q ss_pred hhccCCCCCCCCCcEEEEEeCCCCcCC
Q 003878 735 VLCTSLENSPQTNPIIGRIERKAGHGV 761 (789)
Q Consensus 735 ~~~~~~~~~~~~~~~~l~~~~~~gH~~ 761 (789)
+ |.++++.+++++||.+
T Consensus 217 ~----------g~~~~~~~~~~ggH~~ 233 (255)
T d1jjfa_ 217 N----------NINHVYWLIQGGGHDF 233 (255)
T ss_dssp T----------TCCCEEEEETTCCSSH
T ss_pred C----------CCCEEEEEECCCCcCH
Confidence 8 9999999999999975
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=99.70 E-value=7e-17 Score=165.70 Aligned_cols=211 Identities=11% Similarity=0.045 Sum_probs=149.0
Q ss_pred CcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChh
Q 003878 506 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 585 (789)
Q Consensus 506 ~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~ 585 (789)
+..+.+.+.+.||..++.++|+.|.+..+++++|+|+++||+....... .....++...+|++++++++|+...++..
T Consensus 11 ~~~~~~~~~s~dg~~~~~~~v~~P~~~~~~~~yPvi~~lhG~~~~~~~~--~~~~~~~~~~~~~~vV~v~~~~~~~~~~~ 88 (265)
T d2gzsa1 11 YHFSATSFDSVDGTRHYRVWTAVPNTTAPASGYPILYMLDGNAVMDRLD--DELLKQLSEKTPPVIVAVGYQTNLPFDLN 88 (265)
T ss_dssp EEEEEEEEECTTSSCEEEEEEEEESSCCCTTCEEEEEESSHHHHHHHCC--HHHHHHHTTSCCCEEEEEEESSSSSCCHH
T ss_pred ceeEEEEEEcCCCCEEEEEEEEcCCCCCCCCCceEEEEecCcchhhhHH--HHHHHHHHhcCCCeEEEecCCCCCcCccc
Confidence 3568889999998357999999999988889999999999974332211 11224556678999999999998877654
Q ss_pred HHhccc--------cc----------CCcchHHHHH--HHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeE
Q 003878 586 WHKGGA--------LA----------KKQNCFDDFI--SASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGC 645 (789)
Q Consensus 586 ~~~~~~--------~~----------~~~~~~~D~~--~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a 645 (789)
...... .. .+...+.++. .++.++.++.-+|+++++|+|+|+||++++.++.+ |+.|.+
T Consensus 89 ~r~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~G~S~GG~~a~~~~~~-~~~f~~ 167 (265)
T d2gzsa1 89 SRAYDYTPAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSYFRS 167 (265)
T ss_dssp HHHHHTCCGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSSCSE
T ss_pred ccccccccccCcccccccccchhccccchHHHHHHHHHHHHHHHHHhcCCCcCceEEEeccHHHHHHHHHHHc-CcccCE
Confidence 322110 00 0111233332 24555556666899999999999999999998876 677888
Q ss_pred EEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCC--------C
Q 003878 646 ALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADH--------D 717 (789)
Q Consensus 646 ~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~--------D 717 (789)
+++.+|.+.+ .++.. +...+++...... .+|+++.+|.. |
T Consensus 168 ~~a~s~~~~~-------------------~~~~~---~~~~~~~~~~~~~----------~~~~~~~~g~~~~~~~~~~d 215 (265)
T d2gzsa1 168 YYSASPSLGR-------------------GYDAL---LSRVTAVEPLQFC----------TKHLAIMEGSATQGDNRETH 215 (265)
T ss_dssp EEEESGGGST-------------------THHHH---HHHHHTSCTTTTT----------TCEEEEEECCC---------
T ss_pred EEEECCcccc-------------------cchhh---hhccccccccccC----------CCcEEEEcCCcccccccccc
Confidence 8888875431 11112 2333455555443 57899999977 7
Q ss_pred CCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCC
Q 003878 718 DRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGV 761 (789)
Q Consensus 718 ~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~ 761 (789)
.++++.++.+++++|++. |+++++.+||+++|+.
T Consensus 216 ~~~~~~~~~~l~~~L~~~----------g~~~~~~~~pG~~Hg~ 249 (265)
T d2gzsa1 216 AVGVLSKIHTTLTILKDK----------GVNAVFWDFPNLGHGP 249 (265)
T ss_dssp --CHHHHHHHHHHHHHHT----------TCCEEEEECTTCCHHH
T ss_pred cchhHHHHHHHHHHHHHC----------CCCEEEEEcCCCCcch
Confidence 888999999999999998 9999999999999964
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=3.2e-17 Score=167.73 Aligned_cols=190 Identities=12% Similarity=0.032 Sum_probs=127.7
Q ss_pred CCccEEEEEcCCCCccCCC---CCCH---HHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHH
Q 003878 536 GSHPCLLYGYGGFNISVTP---SFSV---SRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYL 609 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~---~~~~---~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L 609 (789)
++.|+|||+|||....... .|.. .+..++.++||.|+.+|||++++.. ....++|+.++++|+
T Consensus 29 ~~~~~vv~iHGGg~~~~~~~~~~~~~~~~~l~~~~~~~g~~v~~~dYrl~p~~~-----------~~~~~~d~~~~~~~l 97 (263)
T d1vkha_ 29 NTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEIT-----------NPRNLYDAVSNITRL 97 (263)
T ss_dssp TCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTSC-----------TTHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCccCCCCCcchHHHHHHHHHHHHHhCCeEEEEeccccCcchh-----------hhHHHHhhhhhhhcc
Confidence 5679999999985432222 2221 1234555689999999999877632 234679999999999
Q ss_pred HHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC-----------------ceeEEEecCCcccccccccccCCccc-h-hh
Q 003878 610 ISAGYTQSRKLCIEGGSNGGLLVGACINQRPD-----------------LFGCALAHVGVMDMLRYHKFTIGHAW-V-SD 670 (789)
Q Consensus 610 ~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd-----------------~f~a~v~~~p~~d~~~~~~~~~~~~~-~-~e 670 (789)
.++. ++++|+++|+|+||.+++.++...++ ...+.+...++.++...........+ . ..
T Consensus 98 ~~~~--~~~~i~l~G~S~Gg~lal~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (263)
T d1vkha_ 98 VKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTRLA 175 (263)
T ss_dssp HHHH--TCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHHHHHHH
T ss_pred cccc--cccceeeeccCcHHHHHHHHHHhccCccccccccccccccccccccccccccccccchhhhhhccccchhhhcc
Confidence 9874 67899999999999999998876543 34566666666655433211100000 0 11
Q ss_pred cCC-CC----cHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCC
Q 003878 671 FGC-SE----EEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQ 745 (789)
Q Consensus 671 ~g~-p~----~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~ 745 (789)
++. +. .+... .. .....+.+. .+|+|++||++|.+||+.++.+|+++|++.
T Consensus 176 ~~~~~~~~~~~~~~~---~~-~~~~~~~~~----------~~P~lii~G~~D~~vp~~~s~~l~~~L~~~---------- 231 (263)
T d1vkha_ 176 FPDGIQMYEEEPSRV---MP-YVKKALSRF----------SIDMHLVHSYSDELLTLRQTNCLISCLQDY---------- 231 (263)
T ss_dssp CTTCGGGCCCCHHHH---HH-HHHHHHHHH----------TCEEEEEEETTCSSCCTHHHHHHHHHHHHT----------
T ss_pred ccccccccccccccc---Cc-ccccccccc----------CCCeeeeecCCCcccCHHHHHHHHHHHHHC----------
Confidence 111 10 00000 00 011112222 689999999999999999999999999998
Q ss_pred CCcEEEEEeCCCCcCCC
Q 003878 746 TNPIIGRIERKAGHGVG 762 (789)
Q Consensus 746 ~~~~~l~~~~~~gH~~~ 762 (789)
|.++++.++++++|...
T Consensus 232 g~~~~~~~~~~~~H~~~ 248 (263)
T d1vkha_ 232 QLSFKLYLDDLGLHNDV 248 (263)
T ss_dssp TCCEEEEEECCCSGGGG
T ss_pred CCCEEEEEECCCCchhh
Confidence 99999999999999643
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=99.70 E-value=6.8e-17 Score=164.12 Aligned_cols=227 Identities=14% Similarity=0.039 Sum_probs=144.8
Q ss_pred cEEEEEEecC-CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChh
Q 003878 507 HVHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEE 585 (789)
Q Consensus 507 ~~~~~~~~s~-dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~ 585 (789)
..+++++.|. .| .+++++++.|.+.. .+++|+||+.||+....... .......+++ +|....++.+...+..+..
T Consensus 14 ~~~~~~~~S~~lg-~~~~~~v~~P~~~~-~~~~Pvvv~lhG~~~~~~~~-~~~~l~~l~~-~~~~~~~i~v~~~~~~~~~ 89 (246)
T d3c8da2 14 PAKEIIWKSERLK-NSRRVWIFTTGDVT-AEERPLAVLLDGEFWAQSMP-VWPVLTSLTH-RQQLPPAVYVLIDAIDTTH 89 (246)
T ss_dssp CCEEEEEEETTTT-EEEEEEEEEC------CCCCEEEESSHHHHHHTSC-CHHHHHHHHH-TTSSCSCEEEEECCCSHHH
T ss_pred CcEEEEEECCCCC-CEEEEEEEECCCCC-CCCCCEEEEeCCcchhccCc-HHHHHHHHHH-hCCCCceEEeecccccccc
Confidence 4577778875 58 89999999999875 46799999999976443332 2233455555 6654333332222222211
Q ss_pred HHhcccccCCcchHHHHH-H-HHHHHHHc--CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccc
Q 003878 586 WHKGGALAKKQNCFDDFI-S-ASEYLISA--GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKF 661 (789)
Q Consensus 586 ~~~~~~~~~~~~~~~D~~-~-~~~~L~~~--~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~ 661 (789)
+... ......+.+++ . .+.++.+. ..+|+++++|+|+|+||++++.++.++|++|+++++.+|..++....
T Consensus 90 ~~~~---~~~~~~~~~~~~~el~~~v~~~~~~~~d~~~~~i~G~S~GG~~al~~~~~~P~~F~a~~~~sg~~~~~~~~-- 164 (246)
T d3c8da2 90 RAHE---LPCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRG-- 164 (246)
T ss_dssp HHHH---SSSCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTTTTCTT--
T ss_pred cccc---cCccHHHHHHHHHHhhhHHHHhcccccCccceEEEecCchhHHHhhhhccCCchhcEEEcCCcccccccCC--
Confidence 1111 11112233332 2 22222222 34689999999999999999999999999999999999977643221
Q ss_pred cCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCC
Q 003878 662 TIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLE 741 (789)
Q Consensus 662 ~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~ 741 (789)
...... ....++..+.... .+|+++.+|..|+++ ..++++|+++|+++
T Consensus 165 -----------~~~~~~----~~~~~~~~~~~~~----------~~~~~l~~G~~D~~~-~~~~~~l~~~L~~~------ 212 (246)
T d3c8da2 165 -----------GQQEGV----LLEKLKAGEVSAE----------GLRIVLEAGIREPMI-MRANQALYAQLHPI------ 212 (246)
T ss_dssp -----------SSSCCH----HHHHHHTTSSCCC----------SCEEEEEEESSCHHH-HHHHHHHHHHTGGG------
T ss_pred -----------ccchHH----HHHHhhhhhhhcc----------CCCeEEEecCCCcch-hHHHHHHHHHHHHC------
Confidence 111111 1222344555543 689999999999877 57889999999998
Q ss_pred CCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHh
Q 003878 742 NSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKML 783 (789)
Q Consensus 742 ~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l 783 (789)
|.++.+.++++ ||... ...+.+.+.++||.+.|
T Consensus 213 ----g~~~~~~~~~G-gH~~~----~W~~~l~~~l~~l~~~~ 245 (246)
T d3c8da2 213 ----KESIFWRQVDG-GHDAL----CWRGGLMQGLIDLWQPL 245 (246)
T ss_dssp ----TTSEEEEEESC-CSCHH----HHHHHHHHHHHHHHGGG
T ss_pred ----CCCEEEEEeCC-CCChH----HHHHHHHHHHHHHHHhh
Confidence 99999999986 89652 23456677778876544
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.69 E-value=5.5e-14 Score=156.06 Aligned_cols=359 Identities=11% Similarity=0.072 Sum_probs=201.9
Q ss_pred EEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecC----CceEEEEEEEEcCCCceeccccccccccc
Q 003878 107 LYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYS----GSDWATIKLMRIEDQIVEADALSWVCFCF 182 (789)
Q Consensus 107 ~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~----g~~~~~i~v~dl~tg~~~~~~~~~~~~~~ 182 (789)
+++.+..+++.++|++..++.... ..+.+++|||||++|||+.+.. -+...+++++|+++|+..+.. ..
T Consensus 38 ~~~~~~~t~~~~~~~~~~~~~~~~-~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~--~~---- 110 (470)
T d2bgra1 38 ILVFNAEYGNSSVFLENSTFDEFG-HSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEE--RI---- 110 (470)
T ss_dssp EEEEETTTCCEEEEECTTTTTTSS-SCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS--CC----
T ss_pred EEEEECCCCCEEEEEchhhhhhcc-CccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccc--cC----
Confidence 666666678888999988875432 2367899999999999987522 244678999999999765422 11
Q ss_pred ccCccceeeeeeccccccccccccccccceeeEEEeeec-cccce-eeeeee----------c-------ccccceEEEE
Q 003878 183 SHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLV-KSTIY-SFWSVV----------S-------QFKFSSIAWT 243 (789)
Q Consensus 183 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~-~~g~~-~l~~~~----------~-------~~~~~~~~ws 243 (789)
..-..++.++|+|+.+.|.+.-- +|+-+ .+|.. ++-.-. . .-....+.||
T Consensus 111 -------~~~~~~~~~SPDG~~ia~~~~~~----l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wS 179 (470)
T d2bgra1 111 -------PNNTQWVTWSPVGHKLAYVWNND----IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWS 179 (470)
T ss_dssp -------CTTEEEEEECSSTTCEEEEETTE----EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC
T ss_pred -------CccccccccccCcceeeEeeccc----ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEEC
Confidence 01134677889998555444331 11111 12211 110000 0 0012457899
Q ss_pred eCCcEEEEEEccCCCCCC-C---C---CCCc----------cccCCcccEEEEEECCCCCCCcEE---EEec----CCCC
Q 003878 244 HDSKGFFYSRYPAPKEGK-D---M---DAGT----------ETDSNLYHEFYYHFLGTKQSEDIL---CWKD----PEHP 299 (789)
Q Consensus 244 pDg~~i~y~~~~~~~~~~-~---~---~~~~----------~~~~~~~~~i~~~~lg~~~~~~~~---~~~~----~~~~ 299 (789)
|||+.|+|.+.+...... . . .... ........+++++++.+....... .... ....
T Consensus 180 PDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (470)
T d2bgra1 180 PNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGD 259 (470)
T ss_dssp TTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSC
T ss_pred CCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCC
Confidence 999999999887643210 0 0 0000 000111224556665543322111 0000 1224
Q ss_pred eeEEEEEEecCCcEEEEEEEcCCC-CceEEEEEECCCCCCCcccccccCCCCccEeeecc----ccceeEEEecCCCEE-
Q 003878 300 KYIFSGHVTEDGQYLVMCIEENCD-PVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG----FDAQYEVIANDDTVF- 373 (789)
Q Consensus 300 ~~~~~~~~SpDG~~l~~~~~~~~~-~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~s~dG~~l- 373 (789)
.++..+.|+++++.+++...+..+ ....++.+|..++... .+.. .........+ .....+.++++++..
T Consensus 260 ~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~--~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 334 (470)
T d2bgra1 260 HYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN--CLVA---RQHIEMSTTGWVGRFRPSEPHFTLDGNSFY 334 (470)
T ss_dssp EEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE--ECGG---GCEEEECSSSCSSSSSCCCCEECTTSSEEE
T ss_pred ceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEE--EEEE---EeeeeeeccceeecccCCCceeeecCCCcE
Confidence 566788999999877776654432 1234555666554211 0000 0000000000 111234566766654
Q ss_pred EEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCC----eEEEEEEECCCCceeeeccc-
Q 003878 374 TFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV----KYVLQIRDLKNGSLLHQLPI- 448 (789)
Q Consensus 374 ~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g----~~~L~~~dl~tG~~~~~l~~- 448 (789)
++.+.++ +..+|++++++++. ...++.. ......-+.+.+ +.+++.....+ ..+||.++++++...+.|+.
T Consensus 335 ~~~s~~d-g~~~ly~~~~~g~~-~~~lt~g-~~~v~~~~~~d~-~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~ 410 (470)
T d2bgra1 335 KIISNEE-GYRHICYFQIDKKD-CTFITKG-TWEVIGIEALTS-DYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCE 410 (470)
T ss_dssp EEEECTT-SCEEEEEEETTCSC-CEESCCS-SSCEEEEEEECS-SEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTT
T ss_pred EEEeccC-cCceeEEEeccCCc-eeeeccC-CeeEEEEEEECC-CEEEEEEecCCCCcceEEEEEEECCCCCceeEeccc
Confidence 4555554 56789999988776 4555443 333333334444 78877765433 34799999986554455543
Q ss_pred ---CCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEee
Q 003878 449 ---EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFR 494 (789)
Q Consensus 449 ---~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~ 494 (789)
+.+.+..+++|||++.++.+++++..|. +.+++..+++ ...+|.
T Consensus 411 ~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~-~~l~~~~~g~-~v~~le 457 (470)
T d2bgra1 411 LNPERCQYYSVSFSKEAKYYQLRCSGPGLPL-YTLHSSVNDK-GLRVLE 457 (470)
T ss_dssp TSTTTBCBEEEEECTTSSEEEEEECSBSSCE-EEEEETTTTE-EEEEEE
T ss_pred ccCCCCCEEEEEECCCCCEEEEEecCCCCCe-EEEEECCCCC-EEEEEe
Confidence 2445667889999999999999999986 5677888885 344553
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=1.4e-13 Score=140.23 Aligned_cols=261 Identities=16% Similarity=0.098 Sum_probs=174.2
Q ss_pred CEEEEEEEcCCCC-eeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCc
Q 003878 91 NKYFYFHNTGLQP-QSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQI 169 (789)
Q Consensus 91 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~ 169 (789)
.++.|..+..+.. -..||+.+..+...++|++... .+.+++|||||++|||+....+ ...+++++..++.
T Consensus 4 ~~iay~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~-------~~~sP~wSPDGk~IAf~~~~~~--~~~~~~~~~~~~~ 74 (269)
T d2hqsa1 4 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQ-------PLMSPAWSPDGSKLAYVTFESG--RSALVIQTLANGA 74 (269)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESS-------CEEEEEECTTSSEEEEEECTTS--SCEEEEEETTTCC
T ss_pred CeEEEEEEeCCCCceEEEEEEcCCCCCcEEEecCCC-------ceeeeEECCCCCEEEEEEeecc--CcceeeeecccCc
Confidence 3566777764433 3469999865566777776542 2578999999999999987655 4578999999886
Q ss_pred eecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEE
Q 003878 170 VEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGF 249 (789)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i 249 (789)
......... ....+.|||||+.|
T Consensus 75 ~~~~~~~~~---------------------------------------------------------~~~~~~~spdg~~i 97 (269)
T d2hqsa1 75 VRQVASFPR---------------------------------------------------------HNGAPAFSPDGSKL 97 (269)
T ss_dssp EEEEECCSS---------------------------------------------------------CEEEEEECTTSSEE
T ss_pred eeEEeeeec---------------------------------------------------------ccccceecCCCCee
Confidence 543221111 13678999999999
Q ss_pred EEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEE
Q 003878 250 FYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVY 329 (789)
Q Consensus 250 ~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~ 329 (789)
++..... ....+......... ...... .......+.++++++.+++...... ...++
T Consensus 98 ~~~~~~~----------------~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g--~~~i~ 154 (269)
T d2hqsa1 98 AFALSKT----------------GSLNLYVMDLASGQ--IRQVTD---GRSNNTEPTWFPDSQNLAFTSDQAG--RPQVY 154 (269)
T ss_dssp EEEECTT----------------SSCEEEEEETTTCC--EEECCC---CSSCEEEEEECTTSSEEEEEECTTS--SCEEE
T ss_pred eEeeecC----------------Cccceeeccccccc--ceeeee---ccccccccccccccccceecccccC--CceEe
Confidence 9986532 11223333333221 111111 1222345789999999988876544 56799
Q ss_pred EEECCCCCCCcccccccCCCCccEeeec-cccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCce
Q 003878 330 YCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDV 408 (789)
Q Consensus 330 ~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~ 408 (789)
+.+++++. ...+.. ......+.|+|+|+.+++.++.+ +...|+.++..++. ..++... ..
T Consensus 155 ~~~~~~~~--------------~~~~~~~~~~~~~~~~spdg~~~~~~~~~~-~~~~i~~~~~~~~~--~~~~~~~--~~ 215 (269)
T d2hqsa1 155 KVNINGGA--------------PQRITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGG--VQVLSST--FL 215 (269)
T ss_dssp EEETTSSC--------------CEECCCSSSEEEEEEECTTSSEEEEEEECS-SCEEEEEEETTTCC--EEECCCS--SS
T ss_pred eeeccccc--------------ceeeecccccccccccccccceeEEEeecC-CceeeeEeeccccc--ceEeecC--cc
Confidence 99988742 122222 12223466999999999988775 56889999988765 4454443 22
Q ss_pred eeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeeccc
Q 003878 409 LESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR 460 (789)
Q Consensus 409 i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~ 460 (789)
.....|++| ++|++....++..+|++++++++. .++|+...+.+..++|+|
T Consensus 216 ~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 216 DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSP 267 (269)
T ss_dssp CEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEECC
T ss_pred ccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEEeCCCCcEEeEEeCC
Confidence 346678875 578888888888999999998544 477877777787778876
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=6.6e-16 Score=154.98 Aligned_cols=202 Identities=12% Similarity=0.051 Sum_probs=130.3
Q ss_pred EEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeec------CCCCCChhHHhccccc-CCcch
Q 003878 526 IVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIR------GGGEYGEEWHKGGALA-KKQNC 598 (789)
Q Consensus 526 l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~R------G~g~~g~~~~~~~~~~-~~~~~ 598 (789)
++.|.. .+..++||++||..+... .|.. ....+...|+.+++++-. .++..+..|+...... .....
T Consensus 12 ~~~p~~---~~~~~~VI~lHG~G~~~~--~~~~-~~~~l~~~~~~~v~p~Ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 85 (229)
T d1fj2a_ 12 AIVPAA---RKATAAVIFLHGLGDTGH--GWAE-AFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQED 85 (229)
T ss_dssp EEECCS---SCCSEEEEEECCSSSCHH--HHHH-HHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBC
T ss_pred cccCCC---CCCCCEEEEEcCCCCCHH--HHHH-HHHHhcCCCCEEEeCCCCCCccccCCCcccccccccccccccchhh
Confidence 344554 234578999999544321 1221 122233478888887632 1223344555432211 11122
Q ss_pred ---HHHHHHHHH----HHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhc
Q 003878 599 ---FDDFISASE----YLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDF 671 (789)
Q Consensus 599 ---~~D~~~~~~----~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~ 671 (789)
+++..+.++ .+.+. .++++||+++|+|+||.+++.++.++|+.|+++|+.++.+.......
T Consensus 86 ~~~i~~~~~~l~~li~~~~~~-~i~~~ri~l~GfS~Gg~~a~~~~~~~~~~~~gvi~~sg~lp~~~~~~----------- 153 (229)
T d1fj2a_ 86 ESGIKQAAENIKALIDQEVKN-GIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASFP----------- 153 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGSC-----------
T ss_pred hHHHHHHHHHHHHHhhhhhhc-CCCccceeeeecccchHHHHHHHHhhccccCcccccccccccccccc-----------
Confidence 233333333 33333 47999999999999999999999999999999998887542211100
Q ss_pred CCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEE
Q 003878 672 GCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIG 751 (789)
Q Consensus 672 g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l 751 (789)
.++..... ..+|+|++||.+|++||++++++.++.|++. ..+..+++
T Consensus 154 --------------~~~~~~~~-----------~~~Pvli~hG~~D~~vp~~~~~~~~~~L~~~--------~~~~~v~~ 200 (229)
T d1fj2a_ 154 --------------QGPIGGAN-----------RDISILQCHGDCDPLVPLMFGSLTVEKLKTL--------VNPANVTF 200 (229)
T ss_dssp --------------SSCCCSTT-----------TTCCEEEEEETTCSSSCHHHHHHHHHHHHHH--------SCGGGEEE
T ss_pred --------------cccccccc-----------ccCceeEEEcCCCCeeCHHHHHHHHHHHHhc--------CCCCceEE
Confidence 01111111 2579999999999999999999999999985 12568999
Q ss_pred EEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhC
Q 003878 752 RIERKAGHGVGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 752 ~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
++|++.||.... ++..++.+||.++|.
T Consensus 201 ~~~~g~gH~i~~------~~~~~~~~wL~~~Lp 227 (229)
T d1fj2a_ 201 KTYEGMMHSSCQ------QEMMDVKQFIDKLLP 227 (229)
T ss_dssp EEETTCCSSCCH------HHHHHHHHHHHHHSC
T ss_pred EEeCCCCCccCH------HHHHHHHHHHHhHCc
Confidence 999999998742 446678999999874
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.65 E-value=1.1e-14 Score=144.59 Aligned_cols=210 Identities=15% Similarity=0.095 Sum_probs=151.1
Q ss_pred EEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCC--CccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHH
Q 003878 510 QVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF--NISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWH 587 (789)
Q Consensus 510 ~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~--~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~ 587 (789)
+|++++++| +|.+++..++ .++.|++|++||.+ |..+...........+.++|+.++.+|+||-|...
T Consensus 2 ev~i~g~~G--~Le~~~~~~~----~~~~~~~l~~Hp~p~~GG~~~~~~~~~~a~~l~~~G~~~lrfn~RG~g~S~---- 71 (218)
T d2i3da1 2 EVIFNGPAG--RLEGRYQPSK----EKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQ---- 71 (218)
T ss_dssp EEEEEETTE--EEEEEEECCS----STTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCC----
T ss_pred cEEEeCCCc--cEEEEEeCCC----CCCCCEEEEECCCcCcCCcCCcHHHHHHHHHHHhcCeeEEEEecCccCCCc----
Confidence 477888888 6988865433 24579999999864 33322222223445566699999999999987643
Q ss_pred hcccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccc
Q 003878 588 KGGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAW 667 (789)
Q Consensus 588 ~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~ 667 (789)
+.........+|..++++|+..+... ..++.+.|+|+||.+++.++.+.+. ..++++..|.....
T Consensus 72 --G~~~~~~~e~~d~~aa~~~~~~~~~~-~~~~~~~g~S~G~~~a~~~a~~~~~-~~~~~~~~~~~~~~----------- 136 (218)
T d2i3da1 72 --GEFDHGAGELSDAASALDWVQSLHPD-SKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTY----------- 136 (218)
T ss_dssp --SCCCSSHHHHHHHHHHHHHHHHHCTT-CCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTS-----------
T ss_pred --cccccchhHHHHHHHHHhhhhccccc-ccceeEEeeehHHHHHHHHHHhhcc-ccceeecccccccc-----------
Confidence 33445566789999999999988653 3578999999999999999988764 44555544432210
Q ss_pred hhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCC
Q 003878 668 VSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTN 747 (789)
Q Consensus 668 ~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~ 747 (789)
+...+.. ...|+|+++|..|..++..+..+++++++.. .+.
T Consensus 137 --------------------~~~~~~~----------~~~p~l~i~g~~D~~~~~~~~~~l~~~~~~~---------~~~ 177 (218)
T d2i3da1 137 --------------------DFSFLAP----------CPSSGLIINGDADKVAPEKDVNGLVEKLKTQ---------KGI 177 (218)
T ss_dssp --------------------CCTTCTT----------CCSCEEEEEETTCSSSCHHHHHHHHHHHTTS---------TTC
T ss_pred --------------------chhhccc----------cCCCceeeecccceecChHHHHHHHHHHhhc---------cCC
Confidence 0011122 2569999999999999999999999998864 155
Q ss_pred cEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCCC
Q 003878 748 PIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGAS 786 (789)
Q Consensus 748 ~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~~ 786 (789)
.+++.+.++++|.|.... .+..+.+.+||.++|-..
T Consensus 178 ~~~~~vi~gAdHfF~g~~---~~l~~~v~~~l~~~l~~~ 213 (218)
T d2i3da1 178 LITHRTLPGANHFFNGKV---DELMGECEDYLDRRLNGE 213 (218)
T ss_dssp CEEEEEETTCCTTCTTCH---HHHHHHHHHHHHHHHTTC
T ss_pred CccEEEeCCCCCCCcCCH---HHHHHHHHHHHHHhcCCC
Confidence 688999999999987432 355678999999998654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=4.9e-14 Score=156.36 Aligned_cols=356 Identities=11% Similarity=0.050 Sum_probs=202.0
Q ss_pred EEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCC----ceEEEEEEEEcCCCceeccccccccccc
Q 003878 107 LYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSG----SDWATIKLMRIEDQIVEADALSWVCFCF 182 (789)
Q Consensus 107 ~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g----~~~~~i~v~dl~tg~~~~~~~~~~~~~~ 182 (789)
|++.+..+++.++|++..++..- .+..+++||||++|+|..+... +-...++++|++++...+.......
T Consensus 39 i~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~--- 112 (465)
T d1xfda1 39 VRLWNVETNTSTVLIEGKKIESL---RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVS--- 112 (465)
T ss_dssp EEEBCGGGCCCEEEECTTTTTTT---TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCC---
T ss_pred EEEEECCCCCEEEEEcCcccccc---ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCC---
Confidence 66666666778899998877542 2346789999999999876332 2245899999999975432111100
Q ss_pred ccCccceeeeeeccccccccccccccccceeeEEEeeeccccc-eee----------eeeec-----c--cccceEEEEe
Q 003878 183 SHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTI-YSF----------WSVVS-----Q--FKFSSIAWTH 244 (789)
Q Consensus 183 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~-~~l----------~~~~~-----~--~~~~~~~wsp 244 (789)
.+ --..+.++|+|+.+.|+|+-- +++....++. .|| +.++. . -...++.|||
T Consensus 113 ---~~----~l~~~~wSPDG~~iafv~~~n---l~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP 182 (465)
T d1xfda1 113 ---NA----KLQYAGWGPKGQQLIFIFENN---IYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP 182 (465)
T ss_dssp ---SC----CCSBCCBCSSTTCEEEEETTE---EEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT
T ss_pred ---cc----ccceeeeccCCceEEEEecce---EEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECC
Confidence 00 012367889999666655431 1111111111 111 11111 0 0124677999
Q ss_pred CCcEEEEEEccCCCCC----CCCCCC-cc--------c--cCCcccEEEEEECCCCCCCcEEEEec---CCCCeeEEEEE
Q 003878 245 DSKGFFYSRYPAPKEG----KDMDAG-TE--------T--DSNLYHEFYYHFLGTKQSEDILCWKD---PEHPKYIFSGH 306 (789)
Q Consensus 245 Dg~~i~y~~~~~~~~~----~~~~~~-~~--------~--~~~~~~~i~~~~lg~~~~~~~~~~~~---~~~~~~~~~~~ 306 (789)
||+.|+|.+.+..... ...... .. . +.+-..+++++++.++... ...... .....++..+.
T Consensus 183 Dgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~-~~~~~~~~~~~~~~y~~~~~ 261 (465)
T d1xfda1 183 DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD-LEMMPPDDPRMREYYITMVK 261 (465)
T ss_dssp TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC-EECCCCCCGGGSSEEEEEEE
T ss_pred CCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEE-EEEeccCcCccccceeeeeE
Confidence 9999999998765331 000000 00 0 0111135777777654322 111110 11234567889
Q ss_pred EecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEe-eeccc---cceeEEEecCCCEEEEEE-CCCC
Q 003878 307 VTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK-LIDGF---DAQYEVIANDDTVFTFLT-NKDA 381 (789)
Q Consensus 307 ~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~-l~~~~---~~~~~~~s~dG~~l~~~t-n~~~ 381 (789)
|+||++.++...+ +......++++|..++... .+.. ...++ ....+.|++||+.++|+. ....
T Consensus 262 W~~d~~~~~~~~n-R~q~~~~i~~~d~~tg~~~-----------~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~ 329 (465)
T d1xfda1 262 WATSTKVAVTWLN-RAQNVSILTLCDATTGVCT-----------KKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG 329 (465)
T ss_dssp ESSSSEEEEEEEE-TTSCEEEEEEEETTTCCEE-----------EEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred EcCCCeEEEEEEc-cccccceEEEEcCCCCcEE-----------EEEEEcCCceEeccCCceeEccCCCeeEEEEeeeec
Confidence 9999986665554 4445678999999886311 0111 11111 112356999999877652 2223
Q ss_pred CCceEEEEECCC------CCCeEEeccCCCCceeeeEEEec-CCEEEEEEEeCC--eEEEEEEECCCCceeeeccc---C
Q 003878 382 PKYKIIRVDLKE------PNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDV--KYVLQIRDLKNGSLLHQLPI---E 449 (789)
Q Consensus 382 ~~~~L~~~dl~~------~~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g--~~~L~~~dl~tG~~~~~l~~---~ 449 (789)
+..+++.+.+.. +...+.|+. ++..+..-+.+.. ++.+|+.+..+. ..+||.++++++...+.|+. +
T Consensus 330 g~~~ly~~~~~~~~~~~~~~~~~~LT~-G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~ 408 (465)
T d1xfda1 330 GRGKFYHITVSSSQPNSSNDNIQSITS-GDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVE 408 (465)
T ss_dssp SSSCEEEEEEECSSCCSSSCCCCBSCC-SSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSS
T ss_pred ccCceEEEEeccccccCCCceeEEecc-CCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCC
Confidence 456677765421 112344444 3344444345665 367888776553 45899999985544344442 2
Q ss_pred CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEee
Q 003878 450 IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFR 494 (789)
Q Consensus 450 ~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~ 494 (789)
.+....+++|++++.++..++++..|. +.+++..+++ ....|.
T Consensus 409 ~~~~~~~~~S~~~~y~v~~~s~~~~P~-~~~~~~~~~~-~~~~Le 451 (465)
T d1xfda1 409 NCTYFSASFSHSMDFFLLKCEGPGVPM-VTVHNTTDKK-KMFDLE 451 (465)
T ss_dssp SCCCCEEEECTTSSEEEEECCSSSSCC-EEEEETTTCC-EEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEeecCCCCe-EEEEECCCCC-EEEEEc
Confidence 334456788999999999999998776 6677777775 344443
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Probab=99.63 E-value=3e-15 Score=147.84 Aligned_cols=182 Identities=18% Similarity=0.098 Sum_probs=124.7
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccc-cCC----cchHHHHHHHHHHHH
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGAL-AKK----QNCFDDFISASEYLI 610 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~-~~~----~~~~~D~~~~~~~L~ 610 (789)
++.|+||++||..+... .|. .....+. .++.++.++.+.....+..|...... ... ....+++.+.++.+.
T Consensus 21 ~~~p~vv~lHG~g~~~~--~~~-~l~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 96 (209)
T d3b5ea1 21 ESRECLFLLHGSGVDET--TLV-PLARRIA-PTATLVAARGRIPQEDGFRWFERIDPTRFEQKSILAETAAFAAFTNEAA 96 (209)
T ss_dssp SCCCEEEEECCTTBCTT--TTH-HHHHHHC-TTSEEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHH--HHH-HHHHHhc-cCcEEEeeccCcCcccCccccccCCccccchhhHHHHHHHHHHHHHHHH
Confidence 56899999999765432 333 3445565 57888877654222222223221110 000 112355666777787
Q ss_pred HcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCccc
Q 003878 611 SAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLH 690 (789)
Q Consensus 611 ~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~ 690 (789)
++.-+|++||+|+|+|+||.+++.++.++|++|+++|+.+|..... ..+..
T Consensus 97 ~~~~id~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~g~~~~~-----------------------------~~~~~ 147 (209)
T d3b5ea1 97 KRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLD-----------------------------HVPAT 147 (209)
T ss_dssp HHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCS-----------------------------SCCCC
T ss_pred HHhCcccCCEEEEeeCChHHHHHHHHHhCCCcceEEEEeCCccccc-----------------------------ccccc
Confidence 7766899999999999999999999999999999999888743210 00111
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHH
Q 003878 691 NVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMID 770 (789)
Q Consensus 691 ~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~ 770 (789)
+. ..+|++++||.+|++++ ..+.++.+.|++. |.+++++++++ ||++.. +
T Consensus 148 ~~------------~~~p~~~~~G~~D~~~~-~~~~~~~~~l~~~----------G~~v~~~~~~g-gH~i~~------~ 197 (209)
T d3b5ea1 148 DL------------AGIRTLIIAGAADETYG-PFVPALVTLLSRH----------GAEVDARIIPS-GHDIGD------P 197 (209)
T ss_dssp CC------------TTCEEEEEEETTCTTTG-GGHHHHHHHHHHT----------TCEEEEEEESC-CSCCCH------H
T ss_pred cc------------ccchheeeeccCCCccC-HHHHHHHHHHHHC----------CCCeEEEEECC-CCCCCH------H
Confidence 11 25799999999999987 5678899999988 99999999986 798852 2
Q ss_pred HHHHHHHHHH
Q 003878 771 EAADRYGFMA 780 (789)
Q Consensus 771 ~~~~~~~fl~ 780 (789)
+.+.+.+||.
T Consensus 198 ~~~~~~~wl~ 207 (209)
T d3b5ea1 198 DAAIVRQWLA 207 (209)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 3445667773
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.60 E-value=2.3e-15 Score=147.76 Aligned_cols=182 Identities=14% Similarity=0.077 Sum_probs=121.9
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeec--CCCCCChhHHhcccccCCcchHHHHHHHHHHHHH-
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIR--GGGEYGEEWHKGGALAKKQNCFDDFISASEYLIS- 611 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~R--G~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~- 611 (789)
.+..|+||++||+.+... .|.. ....+. .++.|+.+..+ +++. ...+. ....+.....|+...++.+..
T Consensus 14 ~~~~P~vi~lHG~G~~~~--~~~~-~~~~l~-~~~~v~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 85 (203)
T d2r8ba1 14 VAGAPLFVLLHGTGGDEN--QFFD-FGARLL-PQATILSPVGDVSEHGA-ARFFR---RTGEGVYDMVDLERATGKMADF 85 (203)
T ss_dssp CTTSCEEEEECCTTCCHH--HHHH-HHHHHS-TTSEEEEECCSEEETTE-EESSC---BCGGGCBCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHH--HHHH-HHHHhc-cCCeEEEeccccccccc-ccccc---ccCccccchhHHHHHHHHHHHH
Confidence 356899999999654321 2222 334454 56777777543 2221 11111 112222333444443333321
Q ss_pred --c--CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcC
Q 003878 612 --A--GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYS 687 (789)
Q Consensus 612 --~--~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~s 687 (789)
. ...++++|+++|+|+||.++..++..+|+.++++++..|......
T Consensus 86 l~~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~~~~~~~~------------------------------ 135 (203)
T d2r8ba1 86 IKANREHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP------------------------------ 135 (203)
T ss_dssp HHHHHHHHTCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC------------------------------
T ss_pred HHHhhhcCCCceEEEEEecCHHHHHHHHHHhhhhcccceeeecccccccc------------------------------
Confidence 1 235889999999999999999999999999999999888543100
Q ss_pred cccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhh
Q 003878 688 PLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQK 767 (789)
Q Consensus 688 P~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~ 767 (789)
...... ..+|++++||++|++||++++.+++++|++. |.+++++++++ ||++..
T Consensus 136 -~~~~~~----------~~~~~~i~hG~~D~~vp~~~~~~~~~~L~~~----------g~~v~~~~~~g-gH~~~~---- 189 (203)
T d2r8ba1 136 -KISPAK----------PTRRVLITAGERDPICPVQLTKALEESLKAQ----------GGTVETVWHPG-GHEIRS---- 189 (203)
T ss_dssp -CCCCCC----------TTCEEEEEEETTCTTSCHHHHHHHHHHHHHH----------SSEEEEEEESS-CSSCCH----
T ss_pred -cccccc----------ccchhhccccCCCCcccHHHHHHHHHHHHHC----------CCCEEEEEECC-CCcCCH----
Confidence 001111 2689999999999999999999999999998 99999999976 799752
Q ss_pred HHHHHHHHHHHHHHH
Q 003878 768 MIDEAADRYGFMAKM 782 (789)
Q Consensus 768 ~~~~~~~~~~fl~~~ 782 (789)
+....+.+||.++
T Consensus 190 --~~~~~~~~wl~~~ 202 (203)
T d2r8ba1 190 --GEIDAVRGFLAAY 202 (203)
T ss_dssp --HHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHhc
Confidence 3455678888754
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=99.60 E-value=5.2e-15 Score=158.30 Aligned_cols=141 Identities=16% Similarity=0.123 Sum_probs=96.3
Q ss_pred CCcEEEEEEecCCCceEEEEEEEec--CCCCCCCCccEEEEEcCCCCccCCCCCC---HHHHHHHHcCCeEEEEEeecCC
Q 003878 505 EFHVHQVFVPSKDGSTKIPMFIVSK--KNIKLDGSHPCLLYGYGGFNISVTPSFS---VSRTILMRHLGAVFCIANIRGG 579 (789)
Q Consensus 505 ~~~~~~~~~~s~dg~~~i~~~l~~p--~~~~~~~~~P~ll~~hGg~~~~~~~~~~---~~~~~~l~~~G~~v~~~~~RG~ 579 (789)
.|..|+..+++.|| ..|.++-+.. .+....++.|+||++||..+++...... ......|.++||.|+++|.||.
T Consensus 24 ~y~~e~h~v~t~DG-~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~~~~~~~~~~~~sla~~L~~~Gy~V~~~D~rG~ 102 (377)
T d1k8qa_ 24 GYPAEEYEVVTEDG-YILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNLPNNSLAFILADAGYDVWLGNSRGN 102 (377)
T ss_dssp TCCCEEEEEECTTS-EEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCGGGGSSSCTTTCHHHHHHHTTCEEEECCCTTS
T ss_pred CCCceEEEEEcCCC-CEEEEEEecCCCCCCccCCCCCeEEEECCCccchhHHhhcCccchHHHHHHHCCCEEEEEcCCCC
Confidence 46678888999999 9988875532 2333457789999999987665443221 1234455569999999999998
Q ss_pred CCCChhHH-hcccccCC-----cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEe
Q 003878 580 GEYGEEWH-KGGALAKK-----QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA 648 (789)
Q Consensus 580 g~~g~~~~-~~~~~~~~-----~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~ 648 (789)
|.....-. ........ .....|+.++++++.+. ...+++.++|||+||.+++.++.++|+..+.+++
T Consensus 103 G~S~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~--~g~~~v~lvGhS~GG~ia~~~a~~~p~~~~~l~~ 175 (377)
T d1k8qa_ 103 TWARRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKK--TGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKT 175 (377)
T ss_dssp TTSCEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHH--HCCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEE
T ss_pred CCCCCCCCCCCcchhhccCCHHHHhhhhHHHHHHHHHHH--cCCCCEEEEEecchHHHHHHHHHhhhhhhhhcee
Confidence 86432100 00000111 12356888999998776 2236899999999999999999999987655444
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.58 E-value=6.5e-14 Score=142.36 Aligned_cols=224 Identities=14% Similarity=0.097 Sum_probs=128.9
Q ss_pred EEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccc
Q 003878 512 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 591 (789)
Q Consensus 512 ~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~ 591 (789)
.++++|| .+|.+... |..|.||++||..+.. ..|......++. +||.|+++|.||.|....
T Consensus 2 ~~~t~dG-~~l~y~~~--------G~g~~ivlvHG~~~~~--~~~~~~~~~l~~-~g~~vi~~D~~G~G~S~~------- 62 (274)
T d1a8qa_ 2 ICTTRDG-VEIFYKDW--------GQGRPVVFIHGWPLNG--DAWQDQLKAVVD-AGYRGIAHDRRGHGHSTP------- 62 (274)
T ss_dssp EEECTTS-CEEEEEEE--------CSSSEEEEECCTTCCG--GGGHHHHHHHHH-TTCEEEEECCTTSTTSCC-------
T ss_pred eEECcCC-CEEEEEEE--------CCCCeEEEECCCCCCH--HHHHHHHHHHHH-CCCEEEEEeCCCCccccc-------
Confidence 3678999 88875432 2346688899976553 234443444445 899999999999875432
Q ss_pred ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHH-hCCCceeEEEecCCcccccccccc-cCC-----
Q 003878 592 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACIN-QRPDLFGCALAHVGVMDMLRYHKF-TIG----- 664 (789)
Q Consensus 592 ~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~-~~pd~f~a~v~~~p~~d~~~~~~~-~~~----- 664 (789)
.....++.++...+..+++. ...+++.++|||+||.+++.+++ .+|+++++++...+.......... ...
T Consensus 63 -~~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~~~~~~~a~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (274)
T d1a8qa_ 63 -VWDGYDFDTFADDLNDLLTD--LDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIPPVMIKSDKNPDGVPDEV 139 (274)
T ss_dssp -CSSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHH
T ss_pred -ccccccchhhHHHHHHHHHH--hhhhhhcccccccccchHHHHHHHhhhccceeEEEEeccCccchhhhhccchhhHHH
Confidence 12234455554444444443 23468999999999998887554 558999988877653322111000 000
Q ss_pred -------------ccc---hhhc-C--CC---CcHHHH-------------------HHHHhcCcccCCCCCCCCCCCCC
Q 003878 665 -------------HAW---VSDF-G--CS---EEEEEF-------------------YWLIKYSPLHNVRRPWEQNPDKP 703 (789)
Q Consensus 665 -------------~~~---~~e~-g--~p---~~~~~~-------------------~~l~~~sP~~~v~~~~~~~~~~~ 703 (789)
..+ ...+ . .+ ...... ..+...+....+.++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i-------- 211 (274)
T d1a8qa_ 140 FDALKNGVLTERSQFWKDTAEGFFSANRPGNKVTQGNKDAFWYMAMAQTIEGGVRCVDAFGYTDFTEDLKKF-------- 211 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHCCCHHHHTTC--------
T ss_pred HHHHHhhhhhhhHHHhhhhhhhhhhccccchhhhhhHHHHHHHhhhccchhhhhhHHHHhhccchHHHHHhc--------
Confidence 000 0000 0 01 000000 001111112223343
Q ss_pred CCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 704 FQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 704 ~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
..|+|+++|++|..++++...+..+++-. .+++.+++++||...-...+..+..+.+.+||+
T Consensus 212 --~~Pvlii~G~~D~~~~~~~~~~~~~~~~~-------------~~~~~~i~~~gH~~~~~~~~p~~~~~~i~~FL~ 273 (274)
T d1a8qa_ 212 --DIPTLVVHGDDDQVVPIDATGRKSAQIIP-------------NAELKVYEGSSHGIAMVPGDKEKFNRDLLEFLN 273 (274)
T ss_dssp --CSCEEEEEETTCSSSCGGGTHHHHHHHST-------------TCEEEEETTCCTTTTTSTTHHHHHHHHHHHHHT
T ss_pred --cceeeeeccCCCCCcCHHHHHHHHHHhCC-------------CCEEEEECCCCCcccccccCHHHHHHHHHHHHC
Confidence 67999999999999998766554443321 247899999999764322222345567888885
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.57 E-value=4.7e-15 Score=153.43 Aligned_cols=226 Identities=12% Similarity=0.029 Sum_probs=148.1
Q ss_pred CcEEEEEEecC-CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCC--HHHHHHHHcCCeEEEEEeecCCCCC
Q 003878 506 FHVHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFS--VSRTILMRHLGAVFCIANIRGGGEY 582 (789)
Q Consensus 506 ~~~~~~~~~s~-dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~--~~~~~~l~~~G~~v~~~~~RG~g~~ 582 (789)
+.++.++++|. -| ..|++.+. .++.|+|.+.||..+......|. ....++++++|++|++|+-..+ .+
T Consensus 4 ~~v~~~~~~s~~~~-r~i~~~~~-------~~~~p~lyllhG~~g~~d~~~W~~~~~~~~~~~~~~~ivV~P~~~~~-~~ 74 (280)
T d1dqza_ 4 LPVEYLQVPSASMG-RDIKVQFQ-------GGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQS-SF 74 (280)
T ss_dssp SCEEEEEEEETTTT-EEEEEEEE-------CCSSSEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTT-CT
T ss_pred cEEEEEEEecccCC-CcceEEee-------CCCCCEEEECCCCCCCCccchhhhcchHHHHHHhCCcEEEEECCCCC-Cc
Confidence 45677777764 67 89988873 24679999999965543222222 1235677889999999995333 33
Q ss_pred ChhHHhccccc--CCcchHHHH--HHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccc
Q 003878 583 GEEWHKGGALA--KKQNCFDDF--ISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRY 658 (789)
Q Consensus 583 g~~~~~~~~~~--~~~~~~~D~--~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~ 658 (789)
...|+...... .+...++++ .+.+.++.++.-+|++|++|+|+||||++++.++.++||+|+++++.+|.++....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~SmGG~~Al~lA~~~Pd~F~av~s~SG~~~~~~~ 154 (280)
T d1dqza_ 75 YTDWYQPSQSNGQNYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSES 154 (280)
T ss_dssp TSBCSSSCTTTTCCSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTST
T ss_pred CccccCCcccccCCcchhHHHHHHHHHHHHHHHhcCCCCCceEEEEechHHHHHHHHHHhCcCceeEEEEecCccCcccC
Confidence 34455443322 223345444 33566666776689999999999999999999999999999999999999876432
Q ss_pred cc---------ccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCC--------
Q 003878 659 HK---------FTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVV-------- 721 (789)
Q Consensus 659 ~~---------~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~-------- 721 (789)
.. ...+......||.+.++. ..+++|+.++++.. ...+++++.+|..|...+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~p~~~~~~~~-------~~~~~~~~~~G~~~~~~~~~~~~~~~ 223 (280)
T d1dqza_ 155 WWPTLIGLAMNDSGGYNANSMWGPSSDPA----WKRNDPMVQIPRLV-------ANNTRIWVYCGNGTPSDLGGDNIPAK 223 (280)
T ss_dssp THHHHHHHHHHHTTSCCHHHHHCSTTSHH----HHHTCTTTTHHHHH-------HHTCEEEEECCCSCCCTTCCCSHHHH
T ss_pred cchhhhhhhHhhccCCCHhhccCCcchhh----hhhcCHHHHHHHhh-------hcCCeEEEEeCCCCCccccccccccc
Confidence 11 000111122345554432 35778887776530 024689999998887654
Q ss_pred ------cHHHHHHHHHHHHhhccCCCCCCCCCc-EEEEEeCCCCcCC
Q 003878 722 ------PLHSLKLLATMQYVLCTSLENSPQTNP-IIGRIERKAGHGV 761 (789)
Q Consensus 722 ------~~~~~~~~~~L~~~~~~~~~~~~~~~~-~~l~~~~~~gH~~ 761 (789)
...+.++.++|+.. +.+ +.+...+++||..
T Consensus 224 ~~e~~~~~~~~~~~~~l~~~----------g~~~~~~~~~~~GgH~W 260 (280)
T d1dqza_ 224 FLEGLTLRTNQTFRDTYAAD----------GGRNGVFNFPPNGTHSW 260 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----------TCCSEEEECCSCCCSSH
T ss_pred hhhHHHHHHHHHHHHHHHHc----------CCCeEEEEEcCCCccCc
Confidence 24567788888876 554 5555555678964
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.57 E-value=5.2e-14 Score=145.22 Aligned_cols=122 Identities=13% Similarity=0.070 Sum_probs=85.4
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCC
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 595 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~ 595 (789)
.+| .+|.+..+- +...|.||++||..+... .|...+...|.++||.|+++|.||.|....... ...
T Consensus 7 ~g~-~~i~y~~~G------~~~~p~vvl~HG~~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G~G~S~~~~~-----~~~ 72 (297)
T d1q0ra_ 7 SGD-VELWSDDFG------DPADPALLLVMGGNLSAL--GWPDEFARRLADGGLHVIRYDHRDTGRSTTRDF-----AAH 72 (297)
T ss_dssp ETT-EEEEEEEES------CTTSCEEEEECCTTCCGG--GSCHHHHHHHHTTTCEEEEECCTTSTTSCCCCT-----TTS
T ss_pred ECC-EEEEEEEec------CCCCCEEEEECCCCcChh--HHHHHHHHHHHhCCCEEEEEeCCCCcccccccc-----ccc
Confidence 366 777665552 234688999999865433 333444444555999999999999886532111 112
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 596 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
..+++|+.+-+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+..+..
T Consensus 73 ~~~~~~~~~d~~~ll~~--l~~~~~~lvGhS~Gg~~a~~~a~~~P~~v~~lvli~~~~ 128 (297)
T d1q0ra_ 73 PYGFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGG 128 (297)
T ss_dssp CCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred ccccchhhhhhcccccc--ccccceeeccccccchhhhhhhcccccceeeeEEEcccc
Confidence 23577776666666654 344689999999999999999999999999999876643
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.57 E-value=1.9e-14 Score=147.61 Aligned_cols=236 Identities=13% Similarity=0.074 Sum_probs=152.4
Q ss_pred EEEEEEecC-CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCC--CHHHHHHHHcCCeEEEEEeecCCCCCCh
Q 003878 508 VHQVFVPSK-DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSF--SVSRTILMRHLGAVFCIANIRGGGEYGE 584 (789)
Q Consensus 508 ~~~~~~~s~-dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~--~~~~~~~l~~~G~~v~~~~~RG~g~~g~ 584 (789)
+|+++++|+ .| ..||+.+..+ ..|+|++.||..+......| .......+++++++|+++|--. +.+..
T Consensus 4 ~e~~~v~s~~~~-r~~~~~v~~~-------~~pvlylLhG~~g~~~~~~w~~~~~~~~~~~~~~~iVV~p~g~~-~~~y~ 74 (267)
T d1r88a_ 4 YENLMVPSPSMG-RDIPVAFLAG-------GPHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGA-YSMYT 74 (267)
T ss_dssp CEEEEEEETTTT-EEEEEEEECC-------SSSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCT-TSTTS
T ss_pred eEEEEEecccCC-ceeeEEEECC-------CCCEEEEcCCCCCCCCcchhhhccHHHHHHhhCCeEEEEECCCC-CcCCc
Confidence 467778775 67 8899888643 34999999996443221122 1223566777999999998422 22333
Q ss_pred hHHhcccccCCcchHHHHHH--HHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccccc
Q 003878 585 EWHKGGALAKKQNCFDDFIS--ASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT 662 (789)
Q Consensus 585 ~~~~~~~~~~~~~~~~D~~~--~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~ 662 (789)
.|... +...+++++. .+.++.++.-+|++|++|+|.||||++++.++.++||+|+++++.+|.+++.......
T Consensus 75 ~~~~~-----~~~~~~tfl~~eL~~~i~~~~~~d~~r~~i~G~SmGG~~Al~la~~~Pd~F~av~~~SG~~~~~~~~~~~ 149 (267)
T d1r88a_ 75 NWEQD-----GSKQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNG 149 (267)
T ss_dssp BCSSC-----TTCBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSHHHHH
T ss_pred ccccc-----ccccHHHHHHHHHHHHHHHhcCCCCCceEEEEEcchHHHHHHHHHhCcccccEEEEeCCccCCCCccchh
Confidence 33221 2334555544 5677777777899999999999999999999999999999999999988764321100
Q ss_pred ---------CCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCc-----------
Q 003878 663 ---------IGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVP----------- 722 (789)
Q Consensus 663 ---------~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~----------- 722 (789)
.+......||.+..+. ..+.+|+.+++... ...+++++.+|.+|..+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~p~~~~~~~~-------~~~~~~~~~~G~~d~~~~~~~~~~~~~~~~ 218 (267)
T d1r88a_ 150 AIAAGMQQFGGVDTNGMWGAPQLGR----WKWHDPWVHASLLA-------QNNTRVWVWSPTNPGASDPAAMIGQAAEAM 218 (267)
T ss_dssp HHHHHHHHHHCCCTHHHHCCGGGST----TGGGCTTTTHHHHH-------HTTCEEEEECCSSCCCSSGGGGTTCHHHHH
T ss_pred hhhhHHhhhcCCcHhhccCCcchHh----HHhcCHHHHHHhcc-------ccCceEEEEecCCCcccccchhhhhHHHhh
Confidence 0001112344443221 24567877765420 1257899999999977654
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 723 LHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 723 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
..+.++.++|++. .+.++.+...+++||... -..+.+..++-.|..
T Consensus 219 ~~~~~~~~~l~~~---------~g~~~~~~~~~~G~H~W~----~W~~~L~~~~p~~~~ 264 (267)
T d1r88a_ 219 GNSRMFYNQYRSV---------GGHNGHFDFPASGDNGWG----SWAPQLGAMSGDIVG 264 (267)
T ss_dssp HHHHHHHHHHHHT---------TCCSEEEECCSSCCSSHH----HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHc---------CCCcEEEEEcCCCeEChH----HHHHHHHHHHHHHHH
Confidence 2456778888765 267888888888999642 123444555555543
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.57 E-value=6.4e-15 Score=145.53 Aligned_cols=211 Identities=14% Similarity=0.121 Sum_probs=125.3
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCC
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQ 616 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d 616 (789)
..+.||++||..++.. .|.. +...|+++||.|+++|+||.|+....... ........|....+..+... .
T Consensus 10 ~~~~vvliHG~~~~~~--~~~~-l~~~L~~~G~~v~~~D~~G~G~s~~~~~~----~~~~~~~~~~~~~~~~~~~~---~ 79 (242)
T d1tqha_ 10 GERAVLLLHGFTGNSA--DVRM-LGRFLESKGYTCHAPIYKGHGVPPEELVH----TGPDDWWQDVMNGYEFLKNK---G 79 (242)
T ss_dssp SSCEEEEECCTTCCTH--HHHH-HHHHHHHTTCEEEECCCTTSSSCHHHHTT----CCHHHHHHHHHHHHHHHHHH---T
T ss_pred CCCeEEEECCCCCCHH--HHHH-HHHHHHHCCCEEEEEeCCCCccccccccc----cchhHHHHHHHHHHhhhhhc---c
Confidence 3456788999765432 2333 45566669999999999998764322111 11122234455555555544 3
Q ss_pred CCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccccc---CCccchh--------------hcCCC--CcH
Q 003878 617 SRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFT---IGHAWVS--------------DFGCS--EEE 677 (789)
Q Consensus 617 ~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~---~~~~~~~--------------e~g~p--~~~ 677 (789)
.++++++|+|+||.++..++.++|.....+++.............. ....+.. .+... ...
T Consensus 80 ~~~~~l~G~S~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (242)
T d1tqha_ 80 YEKIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKSEETMYEGVLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTL 159 (242)
T ss_dssp CCCEEEEEETHHHHHHHHHHTTSCCSCEEEESCCSSCCCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTTSCCTTH
T ss_pred cCceEEEEcchHHHHhhhhcccCcccccccccccccccchhHHHHHHHHHHHHHhhhccchhhhHHHHHhhhhhhccchh
Confidence 4689999999999999999999998765554433322211110000 0000000 00100 000
Q ss_pred HHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCC
Q 003878 678 EEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKA 757 (789)
Q Consensus 678 ~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~ 757 (789)
... ..........+..+ .+|+|+++|.+|..||++.+.++++.++ +..+++++++++
T Consensus 160 ~~~-~~~~~~~~~~~~~~----------~~p~lii~g~~D~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 216 (242)
T d1tqha_ 160 KAL-QELIADVRDHLDLI----------YAPTFVVQARHDEMINPDSANIIYNEIE------------SPVKQIKWYEQS 216 (242)
T ss_dssp HHH-HHHHHHHHHTGGGC----------CSCEEEEEETTCSSSCTTHHHHHHHHCC------------CSSEEEEEETTC
T ss_pred hcc-ccccccccccccee----------ccccceeecccCCccCHHHHHHHHHHcC------------CCCcEEEEECCC
Confidence 000 00111122333343 6899999999999999999998887664 345789999999
Q ss_pred CcCCCCchhhHHHHHHHHHHHHHH
Q 003878 758 GHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 758 gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
||....... .....+.+.+||++
T Consensus 217 gH~~~~~~~-~~~~~~~i~~Fl~~ 239 (242)
T d1tqha_ 217 GHVITLDQE-KDQLHEDIYAFLES 239 (242)
T ss_dssp CSSGGGSTT-HHHHHHHHHHHHHH
T ss_pred CCcCccccC-HHHHHHHHHHHHHh
Confidence 998654332 23566788999975
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=1.1e-12 Score=133.28 Aligned_cols=248 Identities=13% Similarity=0.107 Sum_probs=161.8
Q ss_pred cEEEEEEecCC-ceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeecc
Q 003878 144 KYLAYALSYSG-SDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVK 222 (789)
Q Consensus 144 ~~la~~~~~~g-~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~ 222 (789)
.+|||.....| ...++|||+|..++..... ... +.
T Consensus 4 ~~iay~~~~~~~~~~~~l~i~d~dG~~~~~l--~~~---------------------~~--------------------- 39 (269)
T d2hqsa1 4 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVV--HRS---------------------PQ--------------------- 39 (269)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSCEEE--EEE---------------------SS---------------------
T ss_pred CeEEEEEEeCCCCceEEEEEEcCCCCCcEEE--ecC---------------------CC---------------------
Confidence 68999998764 5578999999987754432 111 00
Q ss_pred ccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeE
Q 003878 223 STIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYI 302 (789)
Q Consensus 223 ~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~ 302 (789)
...+++|||||++|+|++... ....++.....+...+ .+.... ...
T Consensus 40 -------------~~~sP~wSPDGk~IAf~~~~~----------------~~~~~~~~~~~~~~~~--~~~~~~---~~~ 85 (269)
T d2hqsa1 40 -------------PLMSPAWSPDGSKLAYVTFES----------------GRSALVIQTLANGAVR--QVASFP---RHN 85 (269)
T ss_dssp -------------CEEEEEECTTSSEEEEEECTT----------------SSCEEEEEETTTCCEE--EEECCS---SCE
T ss_pred -------------ceeeeEECCCCCEEEEEEeec----------------cCcceeeeecccCcee--EEeeee---ccc
Confidence 136899999999999997543 3345788887765432 232222 223
Q ss_pred EEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-cccceeEEEecCCCEEEEEECCCC
Q 003878 303 FSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTNKDA 381 (789)
Q Consensus 303 ~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dG~~l~~~tn~~~ 381 (789)
....|||||+++++...... ...+......... ...... ......+.++++++.+++.+...
T Consensus 86 ~~~~~spdg~~i~~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 148 (269)
T d2hqsa1 86 GAPAFSPDGSKLAFALSKTG--SLNLYVMDLASGQ--------------IRQVTDGRSNNTEPTWFPDSQNLAFTSDQA- 148 (269)
T ss_dssp EEEEECTTSSEEEEEECTTS--SCEEEEEETTTCC--------------EEECCCCSSCEEEEEECTTSSEEEEEECTT-
T ss_pred ccceecCCCCeeeEeeecCC--ccceeeccccccc--------------ceeeeeccccccccccccccccceeccccc-
Confidence 46789999999999875443 3445544443311 111111 22223456888899988888775
Q ss_pred CCceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeeccc
Q 003878 382 PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARR 460 (789)
Q Consensus 382 ~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~ 460 (789)
+...|+..+++++. ...+.... .......++++ ..+++....++...+++++.+++.. +.+. ..+....+.++|
T Consensus 149 g~~~i~~~~~~~~~-~~~~~~~~--~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~-~~~~~~~p~~SP 223 (269)
T d2hqsa1 149 GRPQVYKVNINGGA-PQRITWEG--SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLS-STFLDETPSLAP 223 (269)
T ss_dssp SSCEEEEEETTSSC-CEECCCSS--SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECC-CSSSCEEEEECT
T ss_pred CCceEeeeeccccc-ceeeeccc--ccccccccccccceeEEEeecCCceeeeEeecccccc-eEee-cCccccceEECC
Confidence 46789999998876 34444333 44556778875 5677777777788999999885544 3333 333344678999
Q ss_pred CCcEEEEEEcCCCCCcEEEEEECCCCCceEEEee
Q 003878 461 EDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFR 494 (789)
Q Consensus 461 d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~ 494 (789)
||+.|+|... ......+|+++++++. .+.|+
T Consensus 224 DG~~i~f~s~-~~~~~~l~~~~~dg~~--~~~lt 254 (269)
T d2hqsa1 224 NGTMVIYSSS-QGMGSVLNLVSTDGRF--KARLP 254 (269)
T ss_dssp TSSEEEEEEE-ETTEEEEEEEETTSCC--EEECC
T ss_pred CCCEEEEEEc-CCCCcEEEEEECCCCC--EEEEe
Confidence 9999988643 3556789999998774 44443
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.54 E-value=4.6e-15 Score=151.76 Aligned_cols=123 Identities=20% Similarity=0.155 Sum_probs=84.0
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccC
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 594 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~ 594 (789)
.-|| .+|.+..+-.+ +..|+||++||+++.+.. |......++. +||.|+++|.||.|.... ...
T Consensus 8 ~~~g-~~i~y~~~g~~-----~~~~~iv~lHG~~g~~~~--~~~~~~~~~~-~~~~vi~~D~~G~G~S~~-------~~~ 71 (290)
T d1mtza_ 8 KVNG-IYIYYKLCKAP-----EEKAKLMTMHGGPGMSHD--YLLSLRDMTK-EGITVLFYDQFGCGRSEE-------PDQ 71 (290)
T ss_dssp EETT-EEEEEEEECCS-----SCSEEEEEECCTTTCCSG--GGGGGGGGGG-GTEEEEEECCTTSTTSCC-------CCG
T ss_pred EECC-EEEEEEEcCCC-----CCCCeEEEECCCCCchHH--HHHHHHHHHH-CCCEEEEEeCCCCccccc-------ccc
Confidence 4589 88876554322 235889999998776443 3333344555 899999999999875421 111
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccc
Q 003878 595 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMD 654 (789)
Q Consensus 595 ~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d 654 (789)
...++++..+.+..++++- ...+++.++|||+||.+++.++.++|++++++|...|+..
T Consensus 72 ~~~~~~~~~~~l~~ll~~l-~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 130 (290)
T d1mtza_ 72 SKFTIDYGVEEAEALRSKL-FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSS 130 (290)
T ss_dssp GGCSHHHHHHHHHHHHHHH-HTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSB
T ss_pred ccccccchhhhhhhhhccc-ccccccceecccccchhhhhhhhcChhhheeeeecccccC
Confidence 2334555555455444431 1235899999999999999999999999999998877653
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.54 E-value=3.1e-14 Score=144.74 Aligned_cols=220 Identities=13% Similarity=0.031 Sum_probs=133.7
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccC
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 594 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~ 594 (789)
.+| .++.+.-. |..|.||++||..+.... ..|.. ....|+ +||.|+++|.||.|.... ...
T Consensus 10 ~~G-~~~~Y~~~--------G~G~pvvllHG~~~~~~~~~~~~~-~~~~l~-~~~~vi~~Dl~G~G~S~~-------~~~ 71 (271)
T d1uk8a_ 10 AAG-VLTNYHDV--------GEGQPVILIHGSGPGVSAYANWRL-TIPALS-KFYRVIAPDMVGFGFTDR-------PEN 71 (271)
T ss_dssp ETT-EEEEEEEE--------CCSSEEEEECCCSTTCCHHHHHTT-THHHHT-TTSEEEEECCTTSTTSCC-------CTT
T ss_pred ECC-EEEEEEEE--------eeCCeEEEECCCCCCccHHHHHHH-HHHHHh-CCCEEEEEeCCCCCCccc-------ccc
Confidence 488 88875432 233667889997654322 11222 235566 799999999999886432 112
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc-------cccCCcc-
Q 003878 595 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH-------KFTIGHA- 666 (789)
Q Consensus 595 ~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~-------~~~~~~~- 666 (789)
....+++..+.+..+++. .+.+++.++|+|+||.+++.++.++|++++++|+..|........ .......
T Consensus 72 ~~~~~~~~~~~~~~~~~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (271)
T d1uk8a_ 72 YNYSKDSWVDHIIGIMDA--LEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGYTPSIEN 149 (271)
T ss_dssp CCCCHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCSCCCCCHHHHHHHTCCSCHHH
T ss_pred ccccccccchhhhhhhhh--hcCCCceEeeccccceeehHHHHhhhccchheeecccCCCcccchhhhhhhhhccchhHH
Confidence 234567777777777766 344689999999999999999999999999999876643221110 0000000
Q ss_pred ---chhhcCC-C--CcHH-------------HHHHHHhc-------------CcccCCCCCCCCCCCCCCCCCeEEEEec
Q 003878 667 ---WVSDFGC-S--EEEE-------------EFYWLIKY-------------SPLHNVRRPWEQNPDKPFQYPSTLLLTA 714 (789)
Q Consensus 667 ---~~~e~g~-p--~~~~-------------~~~~l~~~-------------sP~~~v~~~~~~~~~~~~~~pp~Li~~g 714 (789)
....+.. + .... ..+.+... .....+.++ ..|+|+++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~P~lii~G 219 (271)
T d1uk8a_ 150 MRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTL----------PNETLIIHG 219 (271)
T ss_dssp HHHHHHHHCSCGGGCCHHHHHHHHHHHTSTTHHHHHHTTSCSSTHHHHHHHCCCHHHHTTC----------CSCEEEEEE
T ss_pred HHHHHHHHhhhcccchhHHHHHHHhhhhchhHHHHHHhhcchhhhhhhhhccccHHHHHhh----------ccceeEEec
Confidence 0000000 0 0000 00011111 111122333 679999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 715 DHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 715 ~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
++|..+|+..+.++.+.+.. .++.+++++||....... .+..+.+.+||.+
T Consensus 220 ~~D~~~~~~~~~~~~~~~~~--------------~~~~~~~~~gH~~~~e~p--~~~~~~i~~Fl~e 270 (271)
T d1uk8a_ 220 REDQVVPLSSSLRLGELIDR--------------AQLHVFGRCGHWTQIEQT--DRFNRLVVEFFNE 270 (271)
T ss_dssp TTCSSSCHHHHHHHHHHCTT--------------EEEEEESSCCSCHHHHTH--HHHHHHHHHHHHT
T ss_pred CCCCCcCHHHHHHHHHhCCC--------------CEEEEECCCCCchHHHCH--HHHHHHHHHHHhc
Confidence 99999999888777665532 478999999997543222 3556778889875
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=99.54 E-value=7.7e-15 Score=150.66 Aligned_cols=224 Identities=9% Similarity=-0.078 Sum_probs=136.2
Q ss_pred CcEEEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCC-CCHHH-------HHHHHcCCeEEEEEeec
Q 003878 506 FHVHQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPS-FSVSR-------TILMRHLGAVFCIANIR 577 (789)
Q Consensus 506 ~~~~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~-~~~~~-------~~~l~~~G~~v~~~~~R 577 (789)
-.++++++++.+| ++ ++.++.|+++++++++|+|+++||+.+...+.. +.... .......+++++.++.+
T Consensus 25 g~v~~~~~~~~~~-~r-~~~vylP~~y~~~k~yPvl~~lhG~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 102 (273)
T d1wb4a1 25 GRIVKETYTGING-TK-SLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFN 102 (273)
T ss_dssp CEEEEEEEEETTE-EE-EEEEEECTTCCTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHHTSSCCEEEEECCSC
T ss_pred CeEEEEEEecCCC-eE-EEEEEeCCCCCCCCCceEEEEEeCCCCCcchhhhhccchhHHHHhhhhhhccCCceeeccccC
Confidence 3678899999888 54 899999999888889999999999977644322 22111 11112246889999988
Q ss_pred CCCCCChhHHhcccccCCcch-HHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccc
Q 003878 578 GGGEYGEEWHKGGALAKKQNC-FDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML 656 (789)
Q Consensus 578 G~g~~g~~~~~~~~~~~~~~~-~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~ 656 (789)
++...+..+............ ..++...+..+..+..+|++|++|+|+|+||++++.++.++||+|+++++.+|..+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~G~S~GG~~a~~~a~~~pd~f~a~~~~sg~~~~~ 182 (273)
T d1wb4a1 103 GGNCTAQNFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYWYG 182 (273)
T ss_dssp STTCCTTTHHHHHHHTHHHHHHHHSCCSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEESCCCCBS
T ss_pred CCCCccccchhcccccccchhhhhhhhhhhhhhhhcccCCccceEEEeeCCcchhhhhhhhcCCCcceEEEEeCcccccC
Confidence 877666655443221111111 1111222233333445799999999999999999999999999999999999976432
Q ss_pred ccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhh
Q 003878 657 RYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVL 736 (789)
Q Consensus 657 ~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~ 736 (789)
.... ... . ........ ..... ....+++.+|..|. +......+...+....
T Consensus 183 ~~~~--------~~~----~-~~~~~~~~----~~~~~----------~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~ 233 (273)
T d1wb4a1 183 NSPQ--------DKA----N-SIAEAINR----SGLSK----------REYFVFAATGSEDI--AYANMNPQIEAMKALP 233 (273)
T ss_dssp SSHH--------HHH----H-HHHHHHHH----HTCCT----------TSCEEEEEEETTCT--THHHHHHHHHHHHTST
T ss_pred CCcc--------ccc----c-cchhhhhh----hhhcc----------cceEEEEecCCCCc--ccccchhHHHHHHHHH
Confidence 2111 000 0 00000110 11111 13567777777664 4445555555554331
Q ss_pred ccCCCCCCCCCcEEEEEeCCCCcC
Q 003878 737 CTSLENSPQTNPIIGRIERKAGHG 760 (789)
Q Consensus 737 ~~~~~~~~~~~~~~l~~~~~~gH~ 760 (789)
.........+..+.+.+++++||.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~ggH~ 257 (273)
T d1wb4a1 234 HFDYTSDFSKGNFYFLVAPGATHW 257 (273)
T ss_dssp TCCBBSCTTTCCEEEEEETTCCSS
T ss_pred HHHHHHHhcCCCEEEEEECCCccC
Confidence 111112334667888889999994
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.53 E-value=1.5e-13 Score=136.35 Aligned_cols=190 Identities=17% Similarity=0.147 Sum_probs=121.3
Q ss_pred CccEEEEEcCCCCccCCCCCCHHHHHHHHcC--CeEEEEEee------cCCCCCChhHHhcccccC-CcchHHHHHH---
Q 003878 537 SHPCLLYGYGGFNISVTPSFSVSRTILMRHL--GAVFCIANI------RGGGEYGEEWHKGGALAK-KQNCFDDFIS--- 604 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~--G~~v~~~~~------RG~g~~g~~~~~~~~~~~-~~~~~~D~~~--- 604 (789)
..|+||++||..+. ...|.. ....+... ++.+++++- .+++-.+..|+....... .....+++.+
T Consensus 13 ~~~~Vi~lHG~G~~--~~~~~~-~~~~l~~~~~~~~~i~p~ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 89 (218)
T d1auoa_ 13 ADACVIWLHGLGAD--RYDFMP-VAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVSAK 89 (218)
T ss_dssp CSEEEEEECCTTCC--TTTTHH-HHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHHHHHHH
T ss_pred CCeEEEEEcCCCCC--hhhHHH-HHHHHHHhCCCcEEEccCCCccccccCCCcccCcccccccccccccchHHHHHHHHH
Confidence 46799999995333 223433 23444423 455555442 122222345654432221 2222333322
Q ss_pred HHHHHHH---cCCCCCCcEEEEeeChHHHHHHHHH-HhCCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHH
Q 003878 605 ASEYLIS---AGYTQSRKLCIEGGSNGGLLVGACI-NQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEF 680 (789)
Q Consensus 605 ~~~~L~~---~~~~d~~~i~i~G~S~GG~l~~~~~-~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~ 680 (789)
.+..+++ +.-+|++||+++|+|+||.+++.++ .+.+..++++|+..+....... . ......
T Consensus 90 ~v~~li~~~~~~~i~~~ri~l~GfSqGg~~a~~~~l~~~~~~~~~~v~~~g~~~~~~~-----------~---~~~~~~- 154 (218)
T d1auoa_ 90 MVTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTFGD-----------E---LELSAS- 154 (218)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTCCT-----------T---CCCCHH-
T ss_pred HHHHHHHHHHHhCCCCcceEEeeeCcchHHHHHHHHhcccccceeeeeccccCccccc-----------c---cccchh-
Confidence 2333322 2346999999999999999998775 4556789999998875421100 0 000000
Q ss_pred HHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcC
Q 003878 681 YWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHG 760 (789)
Q Consensus 681 ~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~ 760 (789)
. ..+|+|++||+.|..||++++.++++.|++. |.+++++.|+ .||.
T Consensus 155 -------------~----------~~~pvl~~hG~~D~vvp~~~~~~~~~~L~~~----------g~~~~~~~~~-~gH~ 200 (218)
T d1auoa_ 155 -------------Q----------QRIPALCLHGQYDDVVQNAMGRSAFEHLKSR----------GVTVTWQEYP-MGHE 200 (218)
T ss_dssp -------------H----------HTCCEEEEEETTCSSSCHHHHHHHHHHHHTT----------TCCEEEEEES-CSSS
T ss_pred -------------c----------cCCCEEEEecCCCCccCHHHHHHHHHHHHHC----------CCCEEEEEEC-CCCc
Confidence 0 1479999999999999999999999999988 8999999996 7898
Q ss_pred CCCchhhHHHHHHHHHHHHHHHhC
Q 003878 761 VGLPTQKMIDEAADRYGFMAKMLG 784 (789)
Q Consensus 761 ~~~~~~~~~~~~~~~~~fl~~~l~ 784 (789)
... ++...+.+||.+.||
T Consensus 201 i~~------~~~~~i~~wl~~~lg 218 (218)
T d1auoa_ 201 VLP------QEIHDIGAWLAARLG 218 (218)
T ss_dssp CCH------HHHHHHHHHHHHHHC
T ss_pred cCH------HHHHHHHHHHHHhcC
Confidence 742 456789999999987
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=2.5e-15 Score=148.28 Aligned_cols=194 Identities=11% Similarity=-0.008 Sum_probs=121.0
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCC
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 595 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~ 595 (789)
-+| .+|.+....|.. ....|.||++||..+....+.... ....|+++||.|+++|+||.|..... .......
T Consensus 13 v~G-~~i~y~~~~~~~---~~~~~~vvllHG~~~~~~~w~~~~-~~~~la~~gy~via~D~~G~G~S~~~---~~~~~~~ 84 (208)
T d1imja_ 13 VQG-QALFFREALPGS---GQARFSVLLLHGIRFSSETWQNLG-TLHRLAQAGYRAVAIDLPGLGHSKEA---AAPAPIG 84 (208)
T ss_dssp ETT-EEECEEEEECSS---SCCSCEEEECCCTTCCHHHHHHHT-HHHHHHHTTCEEEEECCTTSGGGTTS---CCSSCTT
T ss_pred ECC-EEEEEEEecCCC---CCCCCeEEEECCCCCChhHHhhhH-HHHHHHHcCCeEEEeecccccCCCCC---Ccccccc
Confidence 388 888877776653 345678899999765543322111 23445559999999999997642111 1001111
Q ss_pred cchH-HHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccccccCCccchhhcCCC
Q 003878 596 QNCF-DDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCS 674 (789)
Q Consensus 596 ~~~~-~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p 674 (789)
.... +++.+.++.+ +.+++.++|+|+||.+++.++.++|++++++|+..|... .++
T Consensus 85 ~~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lV~~~p~~~--------------~~~--- 141 (208)
T d1imja_ 85 ELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICT--------------DKI--- 141 (208)
T ss_dssp SCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCG--------------GGS---
T ss_pred hhhhhhhhhhccccc------ccccccccccCcHHHHHHHHHHHhhhhcceeeecCcccc--------------ccc---
Confidence 1111 2233333332 336899999999999999999999999999998877421 111
Q ss_pred CcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEe
Q 003878 675 EEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIE 754 (789)
Q Consensus 675 ~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~ 754 (789)
..+. + .++ ..|+|+++|++|..+|... +.++.. ...++.++
T Consensus 142 -~~~~---~---------~~i----------~~P~Lii~G~~D~~~~~~~-----~~~~~~-----------~~~~~~~i 182 (208)
T d1imja_ 142 -NAAN---Y---------ASV----------KTPALIVYGDQDPMGQTSF-----EHLKQL-----------PNHRVLIM 182 (208)
T ss_dssp -CHHH---H---------HTC----------CSCEEEEEETTCHHHHHHH-----HHHTTS-----------SSEEEEEE
T ss_pred -cccc---c---------ccc----------ccccccccCCcCcCCcHHH-----HHHHhC-----------CCCeEEEE
Confidence 1111 1 122 5799999999998776432 223322 23678899
Q ss_pred CCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 755 RKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 755 ~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
+++||....... .+....+.+||..
T Consensus 183 ~~~gH~~~~~~p--~~~~~~l~~Fl~~ 207 (208)
T d1imja_ 183 KGAGHPCYLDKP--EEWHTGLLDFLQG 207 (208)
T ss_dssp TTCCTTHHHHCH--HHHHHHHHHHHHT
T ss_pred CCCCCchhhhCH--HHHHHHHHHHHhc
Confidence 999997432222 3566778888863
|
| >d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta cleavage compound hydrolase CarC species: Janthinobacterium sp. J3 [TaxId: 213804]
Probab=99.51 E-value=8.5e-14 Score=141.12 Aligned_cols=220 Identities=15% Similarity=0.136 Sum_probs=132.0
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccC
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 594 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~ 594 (789)
.|| .+|.+. ..+ ..|.||++||..+.... ..|.. ....|+ +||.|+++|.||.|... ...
T Consensus 9 ~dg-~~l~y~---~~G-----~g~~vvllHG~~~~~~~~~~~~~-~~~~l~-~~~~v~~~D~~G~G~S~--------~~~ 69 (268)
T d1j1ia_ 9 AGG-VETRYL---EAG-----KGQPVILIHGGGAGAESEGNWRN-VIPILA-RHYRVIAMDMLGFGKTA--------KPD 69 (268)
T ss_dssp ETT-EEEEEE---EEC-----CSSEEEEECCCSTTCCHHHHHTT-THHHHT-TTSEEEEECCTTSTTSC--------CCS
T ss_pred ECC-EEEEEE---EEc-----CCCeEEEECCCCCCccHHHHHHH-HHHHHh-cCCEEEEEccccccccc--------CCc
Confidence 489 888753 222 33668899997654322 12332 245566 89999999999987532 112
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc-------ccCCc--
Q 003878 595 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK-------FTIGH-- 665 (789)
Q Consensus 595 ~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~-------~~~~~-- 665 (789)
....+++....+..+++.-.. .+++.++|+|+||.+++.++.++|++++++|+..|..-...... .....
T Consensus 70 ~~~~~~~~~~~~~~~i~~l~~-~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (268)
T d1j1ia_ 70 IEYTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREG 148 (268)
T ss_dssp SCCCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHHH
T ss_pred cccccccccccchhhHHHhhh-cccceeeeccccccccchhhccChHhhheeeecCCCccccccchhhhhhhhhhhhhhh
Confidence 234456666666666554222 25799999999999999999999999999998766422211100 00000
Q ss_pred --cchhhc-CCC--CcH--------------------HHHHHHHhcCcc----cCCCCCCCCCCCCCCCCCeEEEEecCC
Q 003878 666 --AWVSDF-GCS--EEE--------------------EEFYWLIKYSPL----HNVRRPWEQNPDKPFQYPSTLLLTADH 716 (789)
Q Consensus 666 --~~~~e~-g~p--~~~--------------------~~~~~l~~~sP~----~~v~~~~~~~~~~~~~~pp~Li~~g~~ 716 (789)
...... ... ... .....+....-. ..+.++ ..|+|+++|++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~P~l~i~G~~ 218 (268)
T d1j1ia_ 149 MVHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKV----------QVPTLVVQGKD 218 (268)
T ss_dssp HHHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTC----------CSCEEEEEETT
T ss_pred hHHHHHHHhhhhhhhhhhhhHHHHHhhhhhhhhhhhhhhhhhhhccccccchhhhHhhC----------CCCEEEEEeCC
Confidence 000000 000 000 000111111111 112333 67999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 717 DDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 717 D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
|..+|++.+.++.+.+.. .++++++++||....... .+..+.+.+||.+
T Consensus 219 D~~~~~~~~~~~~~~~~~--------------~~~~~~~~~gH~~~~e~p--~~~~~~i~~FL~~ 267 (268)
T d1j1ia_ 219 DKVVPVETAYKFLDLIDD--------------SWGYIIPHCGHWAMIEHP--EDFANATLSFLSL 267 (268)
T ss_dssp CSSSCHHHHHHHHHHCTT--------------EEEEEESSCCSCHHHHSH--HHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhCCC--------------CEEEEECCCCCchHHhCH--HHHHHHHHHHHcC
Confidence 999999888777665542 488999999998643222 3566778888864
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Probab=99.50 E-value=2.1e-13 Score=131.15 Aligned_cols=180 Identities=11% Similarity=-0.040 Sum_probs=113.0
Q ss_pred EEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCc
Q 003878 540 CLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRK 619 (789)
Q Consensus 540 ~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~ 619 (789)
.||++||..++... .+...+...|+++||.|+++|++|.+.. ..+|.+..++.+.. ....+
T Consensus 3 ~V~~vHG~~~~~~~-~~~~~l~~~L~~~G~~v~~~d~p~~~~~---------------~~~~~~~~l~~~~~---~~~~~ 63 (186)
T d1uxoa_ 3 QVYIIHGYRASSTN-HWFPWLKKRLLADGVQADILNMPNPLQP---------------RLEDWLDTLSLYQH---TLHEN 63 (186)
T ss_dssp EEEEECCTTCCTTS-TTHHHHHHHHHHTTCEEEEECCSCTTSC---------------CHHHHHHHHHTTGG---GCCTT
T ss_pred EEEEECCCCCCcch-hHHHHHHHHHHhCCCEEEEeccCCCCcc---------------hHHHHHHHHHHHHh---ccCCC
Confidence 58999996555333 2333345666669999999999986531 24555555555444 34578
Q ss_pred EEEEeeChHHHHHHHHHHhCCCce--eEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCC
Q 003878 620 LCIEGGSNGGLLVGACINQRPDLF--GCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWE 697 (789)
Q Consensus 620 i~i~G~S~GG~l~~~~~~~~pd~f--~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~ 697 (789)
+.++|||+||.+++.++.++|+.. .++++..|+........ ........+...... . +.
T Consensus 64 ~~lvGhS~Gg~~a~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~---------~~-- 124 (186)
T d1uxoa_ 64 TYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLPTLQ-----MLDEFTQGSFDHQKI---I---------ES-- 124 (186)
T ss_dssp EEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCTTCG-----GGGGGTCSCCCHHHH---H---------HH--
T ss_pred cEEEEechhhHHHHHHHHhCCccceeeEEeecccccccchhhh-----hhhhhhccccccccc---c---------cC--
Confidence 999999999999999999988743 44444455433221111 000111111111111 1 11
Q ss_pred CCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchh-hHHHHHHHHH
Q 003878 698 QNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQ-KMIDEAADRY 776 (789)
Q Consensus 698 ~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~-~~~~~~~~~~ 776 (789)
.+|+|++||++|.+||++++.++++++. .++++++++||....... ..-...+.+.
T Consensus 125 --------~~p~lvi~g~~D~~vp~~~~~~l~~~~~---------------~~~~~~~~~gH~~~~~~~~~~~~~~~~l~ 181 (186)
T d1uxoa_ 125 --------AKHRAVIASKDDQIVPFSFSKDLAQQID---------------AALYEVQHGGHFLEDEGFTSLPIVYDVLT 181 (186)
T ss_dssp --------EEEEEEEEETTCSSSCHHHHHHHHHHTT---------------CEEEEETTCTTSCGGGTCSCCHHHHHHHH
T ss_pred --------CCCEEEEecCCCCCCCHHHHHHHHHHcC---------------CEEEEeCCCCCcCccccCcccHHHHHHHH
Confidence 4699999999999999999999887663 268899999997644321 1123444555
Q ss_pred HHHH
Q 003878 777 GFMA 780 (789)
Q Consensus 777 ~fl~ 780 (789)
+||.
T Consensus 182 ~~~~ 185 (186)
T d1uxoa_ 182 SYFS 185 (186)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
|
| >d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Rhodococcus sp., strain rha1 [TaxId: 1831]
Probab=99.50 E-value=6.4e-14 Score=143.57 Aligned_cols=224 Identities=13% Similarity=0.034 Sum_probs=127.2
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCC
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 595 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~ 595 (789)
++ .++++...-+ ...|+||++||..+.... ..|.. ....|+ +||.|+++|.||.|..... .......
T Consensus 12 ~~-~~~h~~~~G~------~~~p~ivllHG~~~~~~~~~~~~~-~~~~L~-~~~~vi~~D~~G~G~S~~~---~~~~~~~ 79 (281)
T d1c4xa_ 12 GT-LASHALVAGD------PQSPAVVLLHGAGPGAHAASNWRP-IIPDLA-ENFFVVAPDLIGFGQSEYP---ETYPGHI 79 (281)
T ss_dssp TT-SCEEEEEESC------TTSCEEEEECCCSTTCCHHHHHGG-GHHHHH-TTSEEEEECCTTSTTSCCC---SSCCSSH
T ss_pred CC-EEEEEEEEec------CCCCEEEEECCCCCCCcHHHHHHH-HHHHHh-CCCEEEEEeCCCCcccccc---ccccccc
Confidence 44 6776655322 245899999996543322 12333 245566 7999999999997753211 0000011
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcccccccc--------cccCCc--
Q 003878 596 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYH--------KFTIGH-- 665 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~--------~~~~~~-- 665 (789)
...+++.+..+..++++ ...+++.++|||+||.+++.++.++|++++++|+..|........ ......
T Consensus 80 ~~~~~~~~~~i~~~i~~--~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (281)
T d1c4xa_ 80 MSWVGMRVEQILGLMNH--FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAFYADPRL 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHH--HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTGGGSCCH
T ss_pred hhhHHHhhhhccccccc--cccccceeccccccccccccccccccccccceEEeccccCccccchhHHHHHHHhhhhccc
Confidence 12233444444444433 123589999999999999999999999999999877643221110 000000
Q ss_pred -cc---hhhc-CCCC----cHHHH----------------HHH-Hhc--------CcccCCCCCCCCCCCCCCCCCeEEE
Q 003878 666 -AW---VSDF-GCSE----EEEEF----------------YWL-IKY--------SPLHNVRRPWEQNPDKPFQYPSTLL 711 (789)
Q Consensus 666 -~~---~~e~-g~p~----~~~~~----------------~~l-~~~--------sP~~~v~~~~~~~~~~~~~~pp~Li 711 (789)
.+ ...+ ..+. ..... ..+ ..+ .+...+.++ ..|+|+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~P~li 227 (281)
T d1c4xa_ 158 TPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRL----------PHDVLV 227 (281)
T ss_dssp HHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTC----------CSCEEE
T ss_pred chhhhhhhhhcccccccchhhhHHHHHhhhcccchhhhhhhhhhhHHhhhhhhhccchhhhhhh----------ccceEE
Confidence 00 0011 1110 00000 000 000 011112232 579999
Q ss_pred EecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 712 LTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 712 ~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
++|++|..+|++.+.++.+.+.. .++.+++++||....... .+....+.+||.
T Consensus 228 i~G~~D~~~~~~~~~~~~~~~~~--------------~~~~~i~~~gH~~~~e~p--~~~~~~i~~Fl~ 280 (281)
T d1c4xa_ 228 FHGRQDRIVPLDTSLYLTKHLKH--------------AELVVLDRCGHWAQLERW--DAMGPMLMEHFR 280 (281)
T ss_dssp EEETTCSSSCTHHHHHHHHHCSS--------------EEEEEESSCCSCHHHHSH--HHHHHHHHHHHH
T ss_pred EEeCCCCCcCHHHHHHHHHHCCC--------------CEEEEECCCCCchHHhCH--HHHHHHHHHHhC
Confidence 99999999999888877665532 478899999998643222 345566778875
|
| >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Burkholderia xenovorans [TaxId: 36873]
Probab=99.49 E-value=7.9e-14 Score=142.89 Aligned_cols=209 Identities=14% Similarity=0.002 Sum_probs=123.0
Q ss_pred CccEEEEEcCCCCccCCCC-CCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 537 SHPCLLYGYGGFNISVTPS-FSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 537 ~~P~ll~~hGg~~~~~~~~-~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
..|.||++||.......+. +......++. +||.|+++|.||.|.... .........+..+.+..++++ .
T Consensus 29 ~G~~ivllHG~~~~~~~~~~~~~~l~~~~~-~g~~v~~~D~~G~G~S~~-------~~~~~~~~~~~~~~i~~li~~--l 98 (283)
T d2rhwa1 29 NGETVIMLHGGGPGAGGWSNYYRNVGPFVD-AGYRVILKDSPGFNKSDA-------VVMDEQRGLVNARAVKGLMDA--L 98 (283)
T ss_dssp CSSEEEEECCCSTTCCHHHHHTTTHHHHHH-TTCEEEEECCTTSTTSCC-------CCCSSCHHHHHHHHHHHHHHH--H
T ss_pred CCCeEEEECCCCCChhHHHHHHHHHHHHHH-CCCEEEEEeCCCCccccc-------ccccccccchhhhhccccccc--c
Confidence 3478889999765543321 1122345666 999999999999875322 111222333333444444443 2
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc-c--------------cCCccc---hhhcC-CC--
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK-F--------------TIGHAW---VSDFG-CS-- 674 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~-~--------------~~~~~~---~~e~g-~p-- 674 (789)
+.+++.++|||+||.+++.++.++|++++++|+..|..-...... . .....+ ...+. .+
T Consensus 99 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (283)
T d2rhwa1 99 DIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSL 178 (283)
T ss_dssp TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGGG
T ss_pred cccccccccccchHHHHHHHHHHhhhhcceEEEeCCCcCCcchhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHhhccccc
Confidence 346899999999999999999999999999998876431111100 0 000000 00111 10
Q ss_pred CcHH----HHHHHH-------------------hcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHH
Q 003878 675 EEEE----EFYWLI-------------------KYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLAT 731 (789)
Q Consensus 675 ~~~~----~~~~l~-------------------~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~ 731 (789)
..++ .+..+. .++....+.++ ..|+|+++|.+|..+++.++.++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~P~lii~G~~D~~~~~~~~~~~~~~ 248 (283)
T d2rhwa1 179 ITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEI----------KAKTFITWGRDDRFVPLDHGLKLLWN 248 (283)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGC----------CSCEEEEEETTCSSSCTHHHHHHHHH
T ss_pred CcHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccccchHHHHhhC----------CCCEEEEEeCCCCCcCHHHHHHHHHh
Confidence 1111 010000 00111222222 67999999999999999998888766
Q ss_pred HHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHH
Q 003878 732 MQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 732 L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~ 781 (789)
+.. +++.+++++||....... .+..+.+.+||.+
T Consensus 249 ~~~--------------~~~~~i~~~gH~~~~e~p--~~~~~~i~~FLk~ 282 (283)
T d2rhwa1 249 IDD--------------ARLHVFSKCGHWAQWEHA--DEFNRLVIDFLRH 282 (283)
T ss_dssp SSS--------------EEEEEESSCCSCHHHHTH--HHHHHHHHHHHHH
T ss_pred CCC--------------CEEEEECCCCCchHHhCH--HHHHHHHHHHHhC
Confidence 532 478999999997543222 3456678888864
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=99.48 E-value=5e-13 Score=139.67 Aligned_cols=126 Identities=14% Similarity=0.051 Sum_probs=89.5
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHh
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 588 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~ 588 (789)
++-.++..|| .+|.+..+-.+ +.|.||++||+++....+... ..++ ..||.|+++|.||.|....
T Consensus 12 ~~~~i~~~dg-~~i~y~~~G~~------~g~pvvllHG~~g~~~~~~~~---~~~l-~~~~~Vi~~D~rG~G~S~~---- 76 (313)
T d1azwa_ 12 QQGSLKVDDR-HTLYFEQCGNP------HGKPVVMLHGGPGGGCNDKMR---RFHD-PAKYRIVLFDQRGSGRSTP---- 76 (313)
T ss_dssp EEEEEECSSS-CEEEEEEEECT------TSEEEEEECSTTTTCCCGGGG---GGSC-TTTEEEEEECCTTSTTSBS----
T ss_pred CCCEEEeCCC-cEEEEEEecCC------CCCEEEEECCCCCCccchHHH---hHHh-hcCCEEEEEeccccCCCCc----
Confidence 4555677899 88877665322 345678899988765443322 2233 4899999999999775321
Q ss_pred cccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 589 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 589 ~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
.......+++|+.+-+..++++ ...+++.++|||+||.++..++.++|+++++++...++.
T Consensus 77 --~~~~~~~~~~~~~~dl~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~ 137 (313)
T d1azwa_ 77 --HADLVDNTTWDLVADIERLRTH--LGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFL 137 (313)
T ss_dssp --TTCCTTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred --cccccchhHHHHHHHHHHHHHh--hccccceeEEecCCcHHHHHHHHHhhhceeeeeEecccc
Confidence 1122334567777777777765 334689999999999999999999999999999877644
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.48 E-value=2e-12 Score=136.14 Aligned_cols=280 Identities=11% Similarity=0.081 Sum_probs=165.8
Q ss_pred eE-eCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEc
Q 003878 87 FK-RGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRI 165 (789)
Q Consensus 87 ~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl 165 (789)
.+ +|+++.+..+ ..+|+.+..++....+ . +...+..++|||||++|+++....| ..|++||+
T Consensus 11 SP~dG~~~a~~~~------g~v~v~d~~~~~~~~~------~--~~~~v~~~~~spDg~~l~~~~~~~g---~~v~v~d~ 73 (360)
T d1k32a3 11 SPLDGDLIAFVSR------GQAFIQDVSGTYVLKV------P--EPLRIRYVRRGGDTKVAFIHGTREG---DFLGIYDY 73 (360)
T ss_dssp EECGGGCEEEEET------TEEEEECTTSSBEEEC------S--CCSCEEEEEECSSSEEEEEEEETTE---EEEEEEET
T ss_pred cCCCCCEEEEEEC------CeEEEEECCCCcEEEc------c--CCCCEEEEEECCCCCEEEEEEcCCC---CEEEEEEC
Confidence 56 7888877532 2478877644433221 1 2234788999999999999876444 46999999
Q ss_pred CCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeC
Q 003878 166 EDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHD 245 (789)
Q Consensus 166 ~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspD 245 (789)
++|+.... .... + ....++||||
T Consensus 74 ~~~~~~~~--~~~~-------~------------------------------------------------~v~~~~~spd 96 (360)
T d1k32a3 74 RTGKAEKF--EENL-------G------------------------------------------------NVFAMGVDRN 96 (360)
T ss_dssp TTCCEEEC--CCCC-------C------------------------------------------------SEEEEEECTT
T ss_pred CCCcEEEe--eCCC-------c------------------------------------------------eEEeeeeccc
Confidence 99876532 1110 0 2468899999
Q ss_pred CcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCC---
Q 003878 246 SKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENC--- 322 (789)
Q Consensus 246 g~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~--- 322 (789)
|+.|++...+ ..++.+++.+.... .+..... .....++|||||++|++......
T Consensus 97 g~~l~~~~~~-------------------~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~spdg~~la~~~~~~~~~~ 153 (360)
T d1k32a3 97 GKFAVVANDR-------------------FEIMTVDLETGKPT--VIERSRE--AMITDFTISDNSRFIAYGFPLKHGET 153 (360)
T ss_dssp SSEEEEEETT-------------------SEEEEEETTTCCEE--EEEECSS--SCCCCEEECTTSCEEEEEEEECSSTT
T ss_pred ccccceeccc-------------------ccccccccccccee--eeeeccc--ccccchhhccceeeeeeeccccccce
Confidence 9999987543 35888888765432 3333322 22346899999999998775442
Q ss_pred --CCceEEEEEECCCCCCCcccccccCCCCccEeeecc-ccceeEEEecCCCEEEEEECCCCC--------------Cce
Q 003878 323 --DPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FDAQYEVIANDDTVFTFLTNKDAP--------------KYK 385 (789)
Q Consensus 323 --~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~s~dG~~l~~~tn~~~~--------------~~~ 385 (789)
.....++++++.+++ ...+... .......|+|||+.|++.+++... ..+
T Consensus 154 ~~~~~~~~~v~d~~~~~--------------~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~ 219 (360)
T d1k32a3 154 DGYVMQAIHVYDMEGRK--------------IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK 219 (360)
T ss_dssp CSCCEEEEEEEETTTTE--------------EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBE
T ss_pred eeccccceeeeccccCc--------------eeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccc
Confidence 124568889988742 1122221 122234599999999988765311 122
Q ss_pred EEEEECCCCC-C---e--------------------EEeccCCCCceeeeEEEecCCEEE-EEEEeC-----------Ce
Q 003878 386 IIRVDLKEPN-D---W--------------------FEVIPEAERDVLESATAVNLNQMI-VSYLSD-----------VK 429 (789)
Q Consensus 386 L~~~dl~~~~-~---~--------------------~~l~~~~~~~~i~~v~~~~~~~lv-~~~~~~-----------g~ 429 (789)
++.+.+.... . + ...++.. ......+...+ ++.. +..... ..
T Consensus 220 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 297 (360)
T d1k32a3 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVD-PGDYRMIIPLE-SSILIYSVPVHGEFAAYYQGAPEK 297 (360)
T ss_dssp EEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCC-CBCEEEEEECS-SEEEEEECCCCCSHHHHHHCCCCC
T ss_pred eEEEecccCccccceECCCcCcccccceeecccccceeecccC-cCceeEeeecC-CCceEEEEEecCCCeeEEEecCCC
Confidence 3333322110 0 0 0000000 11122333333 3322 222111 23
Q ss_pred EEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 430 YVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 430 ~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
..|++||+++++. ..+. +.+..++++||++.|++... -+.++.+|+++++
T Consensus 298 ~~i~~~d~~~~~~-~~~~---~~v~~~~~SpDG~~l~~~~~----Dg~i~v~d~~~~~ 347 (360)
T d1k32a3 298 GVLLKYDVKTRKV-TEVK---NNLTDLRLSADRKTVMVRKD----DGKIYTFPLEKPE 347 (360)
T ss_dssp EEEEEEETTTCCE-EEEE---EEEEEEEECTTSCEEEEEET----TSCEEEEESSCTT
T ss_pred CEEEEEECCCCeE-EEec---CCcCEEEECCCCCEEEEEEC----CCeEEEEECCCCC
Confidence 5889999986654 3332 45778899999998876543 3689999999886
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=3.5e-13 Score=140.48 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=86.4
Q ss_pred EEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccc
Q 003878 512 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 591 (789)
Q Consensus 512 ~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~ 591 (789)
.++..|| .+|++.-. |..|+||++||.++... .|... ...|.++||.|+++|.||.|.... .
T Consensus 15 ~v~~~~g-~~i~y~~~--------G~gp~vlllHG~~~~~~--~~~~~-~~~L~~~g~~vi~~D~~G~G~S~~------~ 76 (322)
T d1zd3a2 15 YVTVKPR-VRLHFVEL--------GSGPAVCLCHGFPESWY--SWRYQ-IPALAQAGYRVLAMDMKGYGESSA------P 76 (322)
T ss_dssp EEEEETT-EEEEEEEE--------CCSSEEEEECCTTCCGG--GGTTH-HHHHHHTTCEEEEEECTTSTTSCC------C
T ss_pred EEEECCC-CEEEEEEE--------cCCCeEEEECCCCCCHH--HHHHH-HHHHHHCCCEEEEecccccccccc------c
Confidence 4566789 88876532 23488999999866543 34433 344544899999999999775321 1
Q ss_pred ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 592 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 592 ~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
.......+++....+..++++ .+.+++.++|||+||.++..++.++|++++++|+..+
T Consensus 77 ~~~~~~~~~~~~~~i~~l~~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~ 134 (322)
T d1zd3a2 77 PEIEEYCMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNT 134 (322)
T ss_dssp SCGGGGSHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred cccccccccccchhhhhhhhc--ccccccccccccchHHHHHHHHHhCCccccceEEEcc
Confidence 112234567777777777765 3456899999999999999999999999999987653
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.48 E-value=6.2e-13 Score=134.69 Aligned_cols=222 Identities=18% Similarity=0.083 Sum_probs=129.8
Q ss_pred EEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccc
Q 003878 512 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 591 (789)
Q Consensus 512 ~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~ 591 (789)
+|++.|| ++|.+... |..|.||++||..+... .|......+.+ +||.|+++|.||.|....
T Consensus 2 ~f~~~dG-~~i~y~~~--------G~g~pvvllHG~~~~~~--~~~~~~~~l~~-~~~~vi~~D~~G~G~S~~------- 62 (273)
T d1a8sa_ 2 TFTTRDG-TQIYYKDW--------GSGQPIVFSHGWPLNAD--SWESQMIFLAA-QGYRVIAHDRRGHGRSSQ------- 62 (273)
T ss_dssp EEECTTS-CEEEEEEE--------SCSSEEEEECCTTCCGG--GGHHHHHHHHH-TTCEEEEECCTTSTTSCC-------
T ss_pred EEEeeCC-cEEEEEEE--------CCCCeEEEECCCCCCHH--HHHHHHHHHHh-CCCEEEEEechhcCcccc-------
Confidence 4778899 88866432 23456788999866533 34444444445 899999999999876431
Q ss_pred ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHH-HHHHhCCCceeEEEecCCccccccccc---ccCC---
Q 003878 592 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVG-ACINQRPDLFGCALAHVGVMDMLRYHK---FTIG--- 664 (789)
Q Consensus 592 ~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~-~~~~~~pd~f~a~v~~~p~~d~~~~~~---~~~~--- 664 (789)
.....+++++.+.+..+++. .+.++..++|+|+||.+++ .++.++|++++++++..+......... ....
T Consensus 63 -~~~~~~~~~~~~~~~~~l~~--l~~~~~~lvg~s~gG~~~~~~~a~~~p~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 139 (273)
T d1a8sa_ 63 -PWSGNDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVPPLMLKTEANPGGLPMEV 139 (273)
T ss_dssp -CSSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCCSSCTTSBCHHH
T ss_pred -ccccccccchHHHHHHHHHh--cCccceeeeeeccCCccchhhhhhhhhhccceeEEEecccccccccccccccchhhh
Confidence 11234556666665555554 3445788999999876555 456667999988877655332111000 0000
Q ss_pred ------------ccch------hhc--CCC---CcHHH----------------HH---HHHhcCcccCCCCCCCCCCCC
Q 003878 665 ------------HAWV------SDF--GCS---EEEEE----------------FY---WLIKYSPLHNVRRPWEQNPDK 702 (789)
Q Consensus 665 ------------~~~~------~e~--g~p---~~~~~----------------~~---~l~~~sP~~~v~~~~~~~~~~ 702 (789)
.... ..+ ..+ ..... +. .+...+....+.++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------- 212 (273)
T d1a8sa_ 140 FDGIRQASLADRSQLYKDLASGPFFGFNQPGAKSSAGMVDWFWLQGMAAGHKNAYDCIKAFSETDFTEDLKKI------- 212 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSTTSTTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHTC-------
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhhcccchhhhhHHHHHHHHHhhcccchhhhhhhHHHhhhhhhhHHHHhh-------
Confidence 0000 000 001 11111 11 11112222333343
Q ss_pred CCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 703 PFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 703 ~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
..|+|+++|++|..+|+..+.++.+++.. ..++.+++++||....... .+..+.+.+||.
T Consensus 213 ---~~Pvlii~g~~D~~~~~~~~~~~~~~~~~-------------~~~~~~i~~~gH~~~~e~p--~~~~~~i~~Fl~ 272 (273)
T d1a8sa_ 213 ---DVPTLVVHGDADQVVPIEASGIASAALVK-------------GSTLKIYSGAPHGLTDTHK--DQLNADLLAFIK 272 (273)
T ss_dssp ---CSCEEEEEETTCSSSCSTTTHHHHHHHST-------------TCEEEEETTCCSCHHHHTH--HHHHHHHHHHHH
T ss_pred ---ccceEEEecCCCCCCCHHHHHHHHHHhCC-------------CCEEEEECCCCCchHHhCH--HHHHHHHHHHcC
Confidence 67999999999999998887777665522 2468889999998643322 345567788874
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.48 E-value=3.7e-13 Score=135.91 Aligned_cols=222 Identities=17% Similarity=0.121 Sum_probs=132.6
Q ss_pred EEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccc
Q 003878 512 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 591 (789)
Q Consensus 512 ~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~ 591 (789)
+|.+.|| ++|.+... |..|.||++||..+... .|... ...|.++||.|+++|.||.|....
T Consensus 2 ~f~~~dG-~~l~y~~~--------G~g~~vv~lHG~~~~~~--~~~~~-~~~l~~~g~~vi~~D~~G~G~S~~------- 62 (271)
T d1va4a_ 2 TFVAKDG-TQIYFKDW--------GSGKPVLFSHGWLLDAD--MWEYQ-MEYLSSRGYRTIAFDRRGFGRSDQ------- 62 (271)
T ss_dssp EEECTTS-CEEEEEEE--------SSSSEEEEECCTTCCGG--GGHHH-HHHHHTTTCEEEEECCTTSTTSCC-------
T ss_pred EEEeECC-eEEEEEEE--------cCCCeEEEECCCCCCHH--HHHHH-HHHHHhCCCEEEEEeccccccccc-------
Confidence 4677899 99975432 23466788999766543 34443 455555899999999999775421
Q ss_pred ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHH-HHHHhCCCceeEEEecCCcccccccccc---cCC---
Q 003878 592 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVG-ACINQRPDLFGCALAHVGVMDMLRYHKF---TIG--- 664 (789)
Q Consensus 592 ~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~-~~~~~~pd~f~a~v~~~p~~d~~~~~~~---~~~--- 664 (789)
.....+++++...+..+.+. .+.+++.++|+|.||.+++ .++.++|+++++++...+.......... ...
T Consensus 63 -~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vg~s~gG~~~~~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~ 139 (271)
T d1va4a_ 63 -PWTGNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVPLDV 139 (271)
T ss_dssp -CSSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCCSCCBCBTTBTTSBCHHH
T ss_pred -cccccccccccccceeeeee--cCCCcceeeccccccccccccccccccceeeEEEeecccccccccchhhhhhhhhhH
Confidence 12234566666666666554 3456899999999887655 4667789999999987665432111100 000
Q ss_pred ------------ccchh-----hcCC----CCcH----------------HHHHHH---HhcCcccCCCCCCCCCCCCCC
Q 003878 665 ------------HAWVS-----DFGC----SEEE----------------EEFYWL---IKYSPLHNVRRPWEQNPDKPF 704 (789)
Q Consensus 665 ------------~~~~~-----e~g~----p~~~----------------~~~~~l---~~~sP~~~v~~~~~~~~~~~~ 704 (789)
..+.. .++. .... .....+ ........+.++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i--------- 210 (271)
T d1va4a_ 140 FARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKI--------- 210 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTGGGTCCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCHHHHHHC---------
T ss_pred HHHHHHHhhhhhhhhhhhhcchhhcccchhhhhhhHHHHHHhhhhhhhhhhhhhcccccchhhhhhhhhhc---------
Confidence 00000 0010 0000 001111 111111222233
Q ss_pred CCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 705 QYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 705 ~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
..|+|+++|++|..+|+..+.++.+++.. .+++.+++++||....... .+..+.+.+||.
T Consensus 211 -~~Pvl~i~g~~D~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~gH~~~~e~p--~~~~~~i~~fL~ 270 (271)
T d1va4a_ 211 -DVPTLVIHGDGDQIVPFETTGKVAAELIK-------------GAELKVYKDAPHGFAVTHA--QQLNEDLLAFLK 270 (271)
T ss_dssp -CSCEEEEEETTCSSSCGGGTHHHHHHHST-------------TCEEEEETTCCTTHHHHTH--HHHHHHHHHHHT
T ss_pred -ccceeecccCCCCCCCHHHHHHHHHHhCC-------------CCEEEEECCCCCchHHhCH--HHHHHHHHHHHC
Confidence 57999999999999999888887665532 2478899999997643222 345567778875
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=99.47 E-value=4.6e-13 Score=135.83 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=82.6
Q ss_pred EEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccc
Q 003878 512 FVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 591 (789)
Q Consensus 512 ~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~ 591 (789)
++++.|| .+|.+..+-|++ .|.||++||..+... .|......+++ +||.|+++|.||.|....
T Consensus 2 ~i~~~dG-~~l~y~~~G~~~------~~~vv~lHG~~~~~~--~~~~~~~~l~~-~g~~vi~~D~~G~G~s~~------- 64 (275)
T d1a88a_ 2 TVTTSDG-TNIFYKDWGPRD------GLPVVFHHGWPLSAD--DWDNQMLFFLS-HGYRVIAHDRRGHGRSDQ------- 64 (275)
T ss_dssp EEECTTS-CEEEEEEESCTT------SCEEEEECCTTCCGG--GGHHHHHHHHH-TTCEEEEECCTTSTTSCC-------
T ss_pred EEEecCC-CEEEEEEecCCC------CCeEEEECCCCCCHH--HHHHHHHHHHh-CCCEEEEEeccccccccc-------
Confidence 4678899 999887775442 367889999876533 34443444445 999999999999775431
Q ss_pred ccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeCh-HHHHHHHHHHhCCCceeEEEecCCc
Q 003878 592 LAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSN-GGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 592 ~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~-GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
.....+++++.+.+..+++. .+.+++.++|+|+ ||.++..++.++|++++++|+..+.
T Consensus 65 -~~~~~~~~~~~~~~~~~l~~--l~~~~~~~vg~s~~G~~~~~~~a~~~p~~v~~lvl~~~~ 123 (275)
T d1a88a_ 65 -PSTGHDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAV 123 (275)
T ss_dssp -CSSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCC
T ss_pred -cccccccccccccccccccc--ccccccccccccccccchhhcccccCcchhhhhhhhccc
Confidence 11233455555555555543 2346788899987 5566667788899999999887653
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=8.9e-14 Score=144.20 Aligned_cols=253 Identities=12% Similarity=0.053 Sum_probs=153.0
Q ss_pred cEEEEEEecC-CCceEEEEEEEecCCCC-----CCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCC-
Q 003878 507 HVHQVFVPSK-DGSTKIPMFIVSKKNIK-----LDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGG- 579 (789)
Q Consensus 507 ~~~~~~~~s~-dg~~~i~~~l~~p~~~~-----~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~- 579 (789)
...++++.|. -| .++++.++.|++.. +++++|+|.+.||..+....+........++.+.|.++++++.-.-
T Consensus 13 ~~~~~s~~S~~l~-~~~~~~VyLP~~y~~~~~~~~~~yPVLYlLhG~~~~~~~w~~~~~~~~~~~~~~~~vv~~~~~p~~ 91 (299)
T d1pv1a_ 13 RLIKLSHNSNSTK-TSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAFWQFQADKYGFAIVFPDTSPRG 91 (299)
T ss_dssp EEEEEEEECSSSS-SEEEEEEEECTTTTSCCCSSCTTBCEEEEECCTTCCHHHHHHHSCHHHHHHHHTCEEEECCSSCCS
T ss_pred EEEEEEEECcccC-CceEEEEEeCCcccccCcccCCCCCEEEEcCCCCCCHHHHHHhhhHHHHHHHcCCceecCCCcccc
Confidence 4566777775 58 89999999999752 3567999999999766432221111234566678999998864210
Q ss_pred ----C--------CCChhHHhcccc--cCCcchHHHH-----HHHHHHHHH----cCCCCCCcEEEEeeChHHHHHHHHH
Q 003878 580 ----G--------EYGEEWHKGGAL--AKKQNCFDDF-----ISASEYLIS----AGYTQSRKLCIEGGSNGGLLVGACI 636 (789)
Q Consensus 580 ----g--------~~g~~~~~~~~~--~~~~~~~~D~-----~~~~~~L~~----~~~~d~~~i~i~G~S~GG~l~~~~~ 636 (789)
+ +.+..|+..... ..+...++|+ +..++.... +...++++.+|+|+||||+.|+.++
T Consensus 92 ~~~~~~~~~~~~~g~~~~~y~d~~~~p~~~~~~~~~~i~~EL~p~i~~~~~~~~~r~~~~~~~~~I~G~SmGG~gAl~~a 171 (299)
T d1pv1a_ 92 DEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGAICGY 171 (299)
T ss_dssp TTSCCCTTCCSSSSSSCCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEETHHHHHHHHHH
T ss_pred cccCCcccccccccCCCccccccccCCcccccchHHHHHHHHHHHHHHhCCcccccccccccceEEEeecccHHHHHHHH
Confidence 0 011122222110 0111234443 333333221 1123457899999999999999988
Q ss_pred Hh--CCCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEec
Q 003878 637 NQ--RPDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTA 714 (789)
Q Consensus 637 ~~--~pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g 714 (789)
.+ +|++|+++++.+|+.+........ ..+...+|.... ...+++|+..+++. .....+++++.+|
T Consensus 172 l~~~~p~~f~~~~s~s~~~~~~~~~~~~--~~~~~~~g~~~~-----~~~~~~~~~l~~~~------~~~~~~~i~~~~G 238 (299)
T d1pv1a_ 172 LKGYSGKRYKSCSAFAPIVNPSNVPWGQ--KAFKGYLGEEKA-----QWEAYDPCLLIKNI------RHVGDDRILIHVG 238 (299)
T ss_dssp HHTGGGTCCSEEEEESCCCCSTTSHHHH--HHHHHHSCC---------CGGGCHHHHGGGS------CCCTTCCEEEECC
T ss_pred HHhcCCCceEEEeeccCcCCcccccchh--hhhhhhcccchh-----hhhhcCHHHHHHHh------hccCCcceeEecC
Confidence 75 589999999999988754322100 011122333211 12344555444332 0013688999999
Q ss_pred CCCCCCCcH-HHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHHhCC
Q 003878 715 DHDDRVVPL-HSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKMLGA 785 (789)
Q Consensus 715 ~~D~~V~~~-~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~l~~ 785 (789)
.+|...+.. .+..|.+++++. .-..++++...++.||... -....+.+.+.|+.++||+
T Consensus 239 ~~D~~~~~~~~~~~f~~~~~~~--------g~~~~~~~~~~~G~~Hsw~----yW~~~i~~~l~f~a~~lgl 298 (299)
T d1pv1a_ 239 DSDPFLEEHLKPELLLEAVKAT--------SWQDYVEIKKVHGFDHSYY----FVSTFVPEHAEFHARNLGL 298 (299)
T ss_dssp TTCTTTTTTCCTHHHHHHHTTS--------TTTTSEEEECCTTCCSSHH----HHHHHHHHHHHHHHHHTTC
T ss_pred CCCcchhhhhcHHHHHHHHHhc--------CCCcceEEEecCCCCcCHH----HHHHHHHHHHHHHHHhcCC
Confidence 999887654 356788888765 1134578888888889741 1345677889999999986
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.47 E-value=8.6e-13 Score=134.67 Aligned_cols=250 Identities=10% Similarity=0.051 Sum_probs=147.7
Q ss_pred EEeCCC--CcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceee
Q 003878 137 VSVSED--AKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFF 214 (789)
Q Consensus 137 ~~~SpD--g~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 214 (789)
+.+||| |++|||+.+ | +||++|+.+|+..+ |+.. +.
T Consensus 4 ~~~sPdi~G~~v~f~~~--~----dl~~~d~~~g~~~~--Lt~~---------------------~~------------- 41 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVCC--D----DLWEHDLKSGSTRK--IVSN---------------------LG------------- 41 (281)
T ss_dssp CCEEEEEETTEEEEEET--T----EEEEEETTTCCEEE--EECS---------------------SS-------------
T ss_pred cccCCCCCCCEEEEEeC--C----cEEEEECCCCCEEE--EecC---------------------CC-------------
Confidence 457999 999999853 3 59999999997654 2221 00
Q ss_pred EEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEe
Q 003878 215 FYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWK 294 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~ 294 (789)
...+++|||||++|+|++.... .....+||+.++.++.... +..
T Consensus 42 ---------------------~~~~p~~SPDG~~iaf~~~~~~-------------~~~~~~i~~~~~~~g~~~~--lt~ 85 (281)
T d1k32a2 42 ---------------------VINNARFFPDGRKIAIRVMRGS-------------SLNTADLYFYNGENGEIKR--ITY 85 (281)
T ss_dssp ---------------------EEEEEEECTTSSEEEEEEEEST-------------TCCEEEEEEEETTTTEEEE--CCC
T ss_pred ---------------------cccCEEECCCCCEEEEEEeeCC-------------CCCceEEEEEEecCCceEE--eee
Confidence 2478999999999999976431 2233568888887654322 211
Q ss_pred cC----CCCeeEEEEEEecCCcEEEEEEEcCCC-CceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecC
Q 003878 295 DP----EHPKYIFSGHVTEDGQYLVMCIEENCD-PVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIAND 369 (789)
Q Consensus 295 ~~----~~~~~~~~~~~SpDG~~l~~~~~~~~~-~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~d 369 (789)
.+ ........+.|||||+.|++....... ....++.++.+++. ...... ......+.++
T Consensus 86 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~--~~~~~~~~~~ 149 (281)
T d1k32a2 86 FSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN--------------FVPLNL--GPATHILFAD 149 (281)
T ss_dssp CCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE--------------EEECCS--CSCSEEEEET
T ss_pred cCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce--------------eEEecC--CccceeeecC
Confidence 11 001112467899999999987654322 23445666665431 111111 1122346667
Q ss_pred CCEEEEEECCCCCC--------ceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCc
Q 003878 370 DTVFTFLTNKDAPK--------YKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGS 441 (789)
Q Consensus 370 G~~l~~~tn~~~~~--------~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~ 441 (789)
|..+++........ ............ ...++... .......+.+ +.+++....++..+|+++|+++++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~l~~~d~~g~~ 225 (281)
T d1k32a2 150 GRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGA-FKKIVDMS--THVSSPVIVG-HRIYFITDIDGFGQIYSTDLDGKD 225 (281)
T ss_dssp TEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTE-EEEEECCS--SCCEEEEEET-TEEEEEECTTSSCEEEEEETTSCS
T ss_pred CCeEEEeeccccceeeeeccCCcceeeeeccccc-eeeccCCc--cccceeeeec-cccceecccccccceEEEeCCCCc
Confidence 76666654432111 111111111111 12222222 2234455666 678877777888899999998555
Q ss_pred eeeecccC-CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEee
Q 003878 442 LLHQLPIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFR 494 (789)
Q Consensus 442 ~~~~l~~~-~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~ 494 (789)
. ++|+.. ...+ .++++|++.|+|... +.+|++|+++++ .+.+.
T Consensus 226 ~-~~lt~~~~~~~--~~~SpDG~~I~f~~~-----~~l~~~d~~~g~--~~~i~ 269 (281)
T d1k32a2 226 L-RKHTSFTDYYP--RHLNTDGRRILFSKG-----GSIYIFNPDTEK--IEKIE 269 (281)
T ss_dssp C-EECCCCCSSCE--EEEEESSSCEEEEET-----TEEEEECTTTCC--EEECC
T ss_pred e-EEeecCCCccc--ccCcCCCCEEEEEeC-----CEEEEEECCCCC--EEEec
Confidence 4 677654 3333 356899999988653 579999999995 55553
|
| >d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Salicylic acid-binding protein 2 (SABP2) species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.43 E-value=7.1e-13 Score=131.85 Aligned_cols=207 Identities=12% Similarity=0.053 Sum_probs=124.6
Q ss_pred cEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCC
Q 003878 539 PCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSR 618 (789)
Q Consensus 539 P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~ 618 (789)
|.||++||..+.+.. |.. ....|.++||.|+++|.||.|.... .......+.+....+..++.... ...
T Consensus 3 ~~vvllHG~~~~~~~--w~~-~~~~L~~~g~~vi~~Dl~G~G~S~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~~ 71 (258)
T d1xkla_ 3 KHFVLVHGACHGGWS--WYK-LKPLLEAAGHKVTALDLAASGTDLR-------KIEELRTLYDYTLPLMELMESLS-ADE 71 (258)
T ss_dssp CEEEEECCTTCCGGG--GTT-HHHHHHHTTCEEEECCCTTSTTCCC-------CGGGCCSHHHHHHHHHHHHHTSC-SSS
T ss_pred CcEEEECCCCCCHHH--HHH-HHHHHHhCCCEEEEecCCCCCCCCC-------CCCCCcchHHHHHHHhhhhhccc-ccc
Confidence 578889998765433 444 3455655899999999999886432 11223345555555555554432 235
Q ss_pred cEEEEeeChHHHHHHHHHHhCCCceeEEEecCCccccccccc------------c-c-CC-------------c------
Q 003878 619 KLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVMDMLRYHK------------F-T-IG-------------H------ 665 (789)
Q Consensus 619 ~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~~~~~------------~-~-~~-------------~------ 665 (789)
++.++|||+||.+++.++.++|++++.+|...|......... . . .. .
T Consensus 72 ~~~lvghS~Gg~va~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (258)
T d1xkla_ 72 KVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFMPDSVHNSSFVLEQYNERTPAENWLDTQFLPYGSPEEPLTSMFFGP 151 (258)
T ss_dssp CEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCCCCSSSCTTHHHHHHHHTSCTTTTTTCEEEECSCTTSCCEEEECCH
T ss_pred cccccccchhHHHHHHHhhhhccccceEEEecccCCCcccchHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhcccccccH
Confidence 789999999999999999999999999998776542211100 0 0 00 0
Q ss_pred cchhh-cCCCCcHHHHHHH--------------HhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHH
Q 003878 666 AWVSD-FGCSEEEEEFYWL--------------IKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLA 730 (789)
Q Consensus 666 ~~~~e-~g~p~~~~~~~~l--------------~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~ 730 (789)
.+... .......+..... ........... ...|+|+++|++|..+|+..+..+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~P~l~i~g~~D~~~~~~~~~~~~~ 221 (258)
T d1xkla_ 152 KFLAHKLYQLCSPEDLALASSLVRPSSLFMEDLSKAKYFTDERF----------GSVKRVYIVCTEDKGIPEEFQRWQID 221 (258)
T ss_dssp HHHHHHTSTTSCHHHHHHHHHHCCCBCCCHHHHHHCCCCCTTTG----------GGSCEEEEEETTCTTTTHHHHHHHHH
T ss_pred HHHHHHhhhcccHHHHHHhhhhhhhhhhhhhhhhhhhhcccccc----------cccceeEeeecCCCCCCHHHHHHHHH
Confidence 00000 0000111111111 11111111222 35799999999999999988888777
Q ss_pred HHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHHHH
Q 003878 731 TMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 731 ~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~~~ 782 (789)
.+.. .++.+++++||....... .+..+.+.+|+.++
T Consensus 222 ~~~~--------------~~~~~i~~~gH~~~~e~P--~~~~~~l~e~~~k~ 257 (258)
T d1xkla_ 222 NIGV--------------TEAIEIKGADHMAMLCEP--QKLCASLLEIAHKY 257 (258)
T ss_dssp HHCC--------------SEEEEETTCCSCHHHHSH--HHHHHHHHHHHHHC
T ss_pred HCCC--------------CEEEEECCCCCchHHhCH--HHHHHHHHHHHHhc
Confidence 6543 368889999998543322 34556677777653
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.43 E-value=5.4e-13 Score=136.71 Aligned_cols=116 Identities=13% Similarity=0.066 Sum_probs=83.8
Q ss_pred CCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCC
Q 003878 516 KDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKK 595 (789)
Q Consensus 516 ~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~ 595 (789)
.|| .+|.+.-.-++ ..|+||++||.++.... |... ...|. +||.|+++|.||.|.... ...
T Consensus 14 ~~g-~~i~y~~~G~~------~~p~lvllHG~~~~~~~--~~~~-~~~L~-~~~~vi~~d~~G~G~S~~--------~~~ 74 (291)
T d1bn7a_ 14 VLG-ERMHYVDVGPR------DGTPVLFLHGNPTSSYL--WRNI-IPHVA-PSHRCIAPDLIGMGKSDK--------PDL 74 (291)
T ss_dssp ETT-EEEEEEEESCS------SSSCEEEECCTTCCGGG--GTTT-HHHHT-TTSCEEEECCTTSTTSCC--------CSC
T ss_pred ECC-EEEEEEEeCCC------CCCeEEEECCCCCCHHH--HHHH-HHHHh-cCCEEEEEeCCCCccccc--------ccc
Confidence 489 89987655332 24678899998765443 3332 35566 799999999999876431 122
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 596 QNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
..+++++.+.+..+++. .+-+++.++|||+||.+++.++.++|++++++|+..+.
T Consensus 75 ~~~~~~~~~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~li~~~~~ 129 (291)
T d1bn7a_ 75 DYFFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFI 129 (291)
T ss_dssp CCCHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHCGGGEEEEEEEEEC
T ss_pred ccchhHHHHHHhhhhhh--hccccccccccccccchhHHHHHhCCcceeeeeeeccc
Confidence 34566777767666665 34468999999999999999999999999999886543
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=99.41 E-value=8.4e-13 Score=137.32 Aligned_cols=121 Identities=14% Similarity=0.096 Sum_probs=87.2
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccC
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 594 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~ 594 (789)
+.|| .+|++.=.-++ ...|+||++||..+.... |......+.. +||.|+++|.||.|.... ....
T Consensus 30 ~~~g-~~~~y~~~G~~-----~~~p~llllHG~~~~~~~--~~~~~~~l~~-~~~~vi~~Dl~G~G~S~~------~~~~ 94 (310)
T d1b6ga_ 30 GYPG-LRAHYLDEGNS-----DAEDVFLCLHGEPTWSYL--YRKMIPVFAE-SGARVIAPDFFGFGKSDK------PVDE 94 (310)
T ss_dssp TCTT-CEEEEEEEECT-----TCSCEEEECCCTTCCGGG--GTTTHHHHHH-TTCEEEEECCTTSTTSCE------ESCG
T ss_pred CCCC-EEEEEEEecCC-----CCCCEEEEECCCCCchHH--HHHHHHHhhc-cCceEEEeeecCcccccc------cccc
Confidence 4589 88875433222 346899999998765444 3333344444 999999999999876432 1112
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc
Q 003878 595 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 595 ~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
...+++++.+.+..+++. ...+++.++|||+||.+++.+|.++|++++++|+..+.
T Consensus 95 ~~~~~~~~~~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~A~~~P~~V~~lvl~~~~ 150 (310)
T d1b6ga_ 95 EDYTFEFHRNFLLALIER--LDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAC 150 (310)
T ss_dssp GGCCHHHHHHHHHHHHHH--HTCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCC
T ss_pred ccccccccccchhhhhhh--ccccccccccceecccccccchhhhccccceEEEEcCc
Confidence 234677787777777765 23468999999999999999999999999999987654
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.40 E-value=8.4e-12 Score=126.42 Aligned_cols=105 Identities=11% Similarity=0.064 Sum_probs=71.0
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
|..|.||++||.++.... |......+++ +||.|+++|.||.|.... .....+++++.+.+..+++. .
T Consensus 21 G~G~~ivllHG~~~~~~~--~~~~~~~l~~-~g~~vi~~D~~G~G~S~~--------~~~~~~~~~~~~dl~~~l~~--l 87 (277)
T d1brta_ 21 GTGQPVVLIHGFPLSGHS--WERQSAALLD-AGYRVITYDRRGFGQSSQ--------PTTGYDYDTFAADLNTVLET--L 87 (277)
T ss_dssp CSSSEEEEECCTTCCGGG--GHHHHHHHHH-TTCEEEEECCTTSTTSCC--------CSSCCSHHHHHHHHHHHHHH--H
T ss_pred ccCCeEEEECCCCCCHHH--HHHHHHHHHh-CCCEEEEEeCCCCCcccc--------cccccchhhhhhhhhhhhhc--c
Confidence 345778899998765433 4444444444 999999999999775421 11223556665555555544 2
Q ss_pred CCCcEEEEeeChHH-HHHHHHHHhCCCceeEEEecCCcc
Q 003878 616 QSRKLCIEGGSNGG-LLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 616 d~~~i~i~G~S~GG-~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
..+++.++|||+|| .++..++.++|++++++|...++.
T Consensus 88 ~~~~~~lvGhS~G~~~~~~~~a~~~p~~v~~lvl~~~~~ 126 (277)
T d1brta_ 88 DLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLE 126 (277)
T ss_dssp TCCSEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCC
T ss_pred CcccccccccccchhhhhHHHHHhhhcccceEEEecCCC
Confidence 33689999999996 555566777899999999876543
|
| >d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Hydroxynitrile lyase species: Rubber tree (Hevea brasiliensis) [TaxId: 3981]
Probab=99.39 E-value=8.9e-13 Score=131.49 Aligned_cols=102 Identities=16% Similarity=0.190 Sum_probs=73.4
Q ss_pred EEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCCCcE
Q 003878 541 LLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQSRKL 620 (789)
Q Consensus 541 ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i 620 (789)
+|++||..+.+. .|.. ....|.++||.|+++|.||.|..... .....++++..+.+..++.+- ...+++
T Consensus 5 ~vliHG~~~~~~--~w~~-~~~~L~~~g~~Via~Dl~G~G~S~~~-------~~~~~~~~~~~~~l~~~~~~~-~~~~~~ 73 (256)
T d3c70a1 5 FVLIHTICHGAW--IWHK-LKPLLEALGHKVTALDLAASGVDPRQ-------IEEIGSFDEYSEPLLTFLEAL-PPGEKV 73 (256)
T ss_dssp EEEECCTTCCGG--GGTT-HHHHHHHTTCEEEEECCTTSTTCSCC-------GGGCCSHHHHTHHHHHHHHHS-CTTCCE
T ss_pred EEEeCCCCCCHH--HHHH-HHHHHHhCCCEEEEEcCCCCCCCCCC-------CCCCCCHHHHHHHhhhhhhhh-ccccce
Confidence 578999766543 3443 34556558999999999998764321 122345667766666655442 234689
Q ss_pred EEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 621 CIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 621 ~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
.++|||+||.+++.++.++|++++++|...+..
T Consensus 74 ~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 106 (256)
T d3c70a1 74 ILVGESCGGLNIAIAADKYCEKIAAAVFHNSVL 106 (256)
T ss_dssp EEEEETTHHHHHHHHHHHHGGGEEEEEEESCCC
T ss_pred eecccchHHHHHHHHhhcCchhhhhhheecccc
Confidence 999999999999999999999999999876543
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Probab=99.38 E-value=5e-12 Score=129.31 Aligned_cols=123 Identities=16% Similarity=0.055 Sum_probs=84.4
Q ss_pred EEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcc
Q 003878 511 VFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGG 590 (789)
Q Consensus 511 ~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~ 590 (789)
..++. +| .+|++.-. |..|.||++||..+... .|.. ....|. .||.|+++|.||.|......
T Consensus 11 ~~~~~-~~-~~l~y~~~--------G~gp~vv~lHG~~~~~~--~~~~-~~~~l~-~~~~vi~~D~~G~G~s~~~~---- 72 (293)
T d1ehya_ 11 YEVQL-PD-VKIHYVRE--------GAGPTLLLLHGWPGFWW--EWSK-VIGPLA-EHYDVIVPDLRGFGDSEKPD---- 72 (293)
T ss_dssp EEEEC-SS-CEEEEEEE--------ECSSEEEEECCSSCCGG--GGHH-HHHHHH-TTSEEEEECCTTSTTSCCCC----
T ss_pred eEEEE-CC-EEEEEEEE--------CCCCeEEEECCCCCCHH--HHHH-HHHHHh-cCCEEEEecCCcccCCcccc----
Confidence 34444 67 78865432 33578999999765433 3443 456666 79999999999987432110
Q ss_pred cccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 591 ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 591 ~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
.......+++++...+..+++. ...+++.++|||+||.+++.++.++|+++.++|+..|..
T Consensus 73 ~~~~~~~~~~~~a~~~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 133 (293)
T d1ehya_ 73 LNDLSKYSLDKAADDQAALLDA--LGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQ 133 (293)
T ss_dssp TTCGGGGCHHHHHHHHHHHHHH--TTCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSC
T ss_pred ccccccccchhhhhHHHhhhhh--cCccccccccccccccchhcccccCccccceeeeeeccC
Confidence 0112233456666666666554 234689999999999999999999999999999887753
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=99.38 E-value=1.4e-11 Score=126.16 Aligned_cols=126 Identities=15% Similarity=0.126 Sum_probs=87.8
Q ss_pred EEEEEecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHh
Q 003878 509 HQVFVPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHK 588 (789)
Q Consensus 509 ~~~~~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~ 588 (789)
+.-++++.|| .+|.+...-++ ..|.||++||.++....+. .. ...++ +||.|+++|.||.|....
T Consensus 12 ~~~~v~~~dG-~~i~y~~~G~~------~g~pvvllHG~~~~~~~w~--~~-~~~l~-~~~~vi~~D~rG~G~S~~---- 76 (313)
T d1wm1a_ 12 DSGWLDTGDG-HRIYWELSGNP------NGKPAVFIHGGPGGGISPH--HR-QLFDP-ERYKVLLFDQRGCGRSRP---- 76 (313)
T ss_dssp EEEEEECSSS-CEEEEEEEECT------TSEEEEEECCTTTCCCCGG--GG-GGSCT-TTEEEEEECCTTSTTCBS----
T ss_pred cCCEEEeCCC-cEEEEEEecCC------CCCeEEEECCCCCcccchH--HH-HHHhh-cCCEEEEEeCCCcccccc----
Confidence 3445677899 99987665332 2356788899877655433 22 34555 899999999999875421
Q ss_pred cccccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 589 GGALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 589 ~~~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
........+.++.+.+..++.. ....++.++|+|+||.++..++..+|++++++++..+..
T Consensus 77 --~~~~~~~~~~~~~~d~~~~~~~--~~~~~~~~vg~s~g~~~~~~~a~~~~~~v~~~v~~~~~~ 137 (313)
T d1wm1a_ 77 --HASLDNNTTWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFT 137 (313)
T ss_dssp --TTCCTTCSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred --cccccccchhhHHHHHHhhhhc--cCCCcceeEeeecCCchhhHHHHHHhhhheeeeeccccc
Confidence 1222234455555555555554 244689999999999999999999999999998876544
|
| >d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Gamma-lactamase species: Aureobacterium sp. [TaxId: 51671]
Probab=99.37 E-value=2.5e-12 Score=130.77 Aligned_cols=104 Identities=15% Similarity=0.070 Sum_probs=71.7
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
|..|.||++||..+.+. .|......++. +||.|+++|.||.|.... .....+++++...+..+++. .
T Consensus 21 G~g~~illlHG~~~~~~--~~~~~~~~l~~-~~~~vi~~D~~G~G~S~~--------~~~~~~~~~~~~di~~~i~~--l 87 (279)
T d1hkha_ 21 GSGQPVVLIHGYPLDGH--SWERQTRELLA-QGYRVITYDRRGFGGSSK--------VNTGYDYDTFAADLHTVLET--L 87 (279)
T ss_dssp SSSEEEEEECCTTCCGG--GGHHHHHHHHH-TTEEEEEECCTTSTTSCC--------CSSCCSHHHHHHHHHHHHHH--H
T ss_pred ccCCeEEEECCCCCCHH--HHHHHHHHHHH-CCCEEEEEechhhCCccc--------cccccchhhhhhhhhhhhhh--c
Confidence 34577899999766533 34444445556 999999999999876431 12234566665555555544 2
Q ss_pred CCCcEEEEeeChHH-HHHHHHHHhCCCceeEEEecCCc
Q 003878 616 QSRKLCIEGGSNGG-LLVGACINQRPDLFGCALAHVGV 652 (789)
Q Consensus 616 d~~~i~i~G~S~GG-~l~~~~~~~~pd~f~a~v~~~p~ 652 (789)
+.+++.++|||+|| .++..++.++|++++++|+..+.
T Consensus 88 ~~~~~~lvGhS~Gg~~~a~~~a~~~p~~v~~lvli~~~ 125 (279)
T d1hkha_ 88 DLRDVVLVGFSMGTGELARYVARYGHERVAKLAFLASL 125 (279)
T ss_dssp TCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred CcCccccccccccccchhhhhccccccccceeEEeecc
Confidence 44689999999996 55566677789999999987654
|
| >d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Biotin biosynthesis protein BioH domain: Biotin biosynthesis protein BioH species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=1.4e-12 Score=131.31 Aligned_cols=198 Identities=13% Similarity=-0.001 Sum_probs=115.2
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
.|.||++||..+... .|.. ....|. .||.|+++|.||.|... ......+.|+.+. +...+ .
T Consensus 11 ~~~lvllHG~~~~~~--~~~~-~~~~L~-~~~~vi~~D~~G~G~S~---------~~~~~~~~d~~~~---~~~~~---~ 71 (256)
T d1m33a_ 11 NVHLVLLHGWGLNAE--VWRC-IDEELS-SHFTLHLVDLPGFGRSR---------GFGALSLADMAEA---VLQQA---P 71 (256)
T ss_dssp SSEEEEECCTTCCGG--GGGG-THHHHH-TTSEEEEECCTTSTTCC---------SCCCCCHHHHHHH---HHTTS---C
T ss_pred CCeEEEECCCCCCHH--HHHH-HHHHHh-CCCEEEEEeCCCCCCcc---------ccccccccccccc---ccccc---c
Confidence 366788999765433 3443 345667 79999999999977532 1223445555433 33332 3
Q ss_pred CcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCc--cccccccc---------c----c-CCccchh----h--cCCCC
Q 003878 618 RKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGV--MDMLRYHK---------F----T-IGHAWVS----D--FGCSE 675 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~--~d~~~~~~---------~----~-~~~~~~~----e--~g~p~ 675 (789)
+++.++|+|+||.+++.++.++|++++++++..+. ........ + . ....+.. . .+...
T Consensus 72 ~~~~l~GhS~Gg~ia~~~a~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (256)
T d1m33a_ 72 DKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTET 151 (256)
T ss_dssp SSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTT
T ss_pred cceeeeecccchHHHHHHHHhCCcccceeeeeecccccccchhhhhhHHHHHHHHHhhhhhhhHHHHHHHhhhhhccccc
Confidence 68999999999999999999999999998776532 22111000 0 0 0000000 0 01100
Q ss_pred cHH----------------------HHHHHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHH
Q 003878 676 EEE----------------------EFYWLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQ 733 (789)
Q Consensus 676 ~~~----------------------~~~~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~ 733 (789)
... ....+...+....++++ ..|+|+++|++|..+|++.+..+.+.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i----------~~P~lii~G~~D~~~p~~~~~~l~~~~~ 221 (256)
T d1m33a_ 152 ARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNV----------SMPFLRLYGYLDGLVPRKVVPMLDKLWP 221 (256)
T ss_dssp HHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGC----------CSCEEEEEETTCSSSCGGGCC-CTTTCT
T ss_pred hhhHHHHHHHhhhhcchhhHHHHHhhhhhhcccchHHHHHhc----------cCCccccccccCCCCCHHHHHHHHHHCC
Confidence 000 11112222222223333 5799999999999999887666544332
Q ss_pred HhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHHHHHHH
Q 003878 734 YVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 734 ~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
..++.+++++||....... .+..+.+.+|+.
T Consensus 222 --------------~~~~~~i~~~gH~~~~e~p--~~~~~~l~~fl~ 252 (256)
T d1m33a_ 222 --------------HSESYIFAKAAHAPFISHP--AEFCHLLVALKQ 252 (256)
T ss_dssp --------------TCEEEEETTCCSCHHHHSH--HHHHHHHHHHHT
T ss_pred --------------CCEEEEECCCCCchHHHCH--HHHHHHHHHHHH
Confidence 2478889999997543222 345566777775
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.33 E-value=4e-09 Score=107.27 Aligned_cols=243 Identities=11% Similarity=0.067 Sum_probs=152.2
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccccee
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFF 213 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 213 (789)
..++++||||++|+.+....+ +|++||+++++.+.. +....
T Consensus 34 p~~va~spdG~~l~v~~~~~~----~i~v~d~~t~~~~~~-~~~~~---------------------------------- 74 (301)
T d1l0qa2 34 PMGAVISPDGTKVYVANAHSN----DVSIIDTATNNVIAT-VPAGS---------------------------------- 74 (301)
T ss_dssp EEEEEECTTSSEEEEEEGGGT----EEEEEETTTTEEEEE-EECSS----------------------------------
T ss_pred ceEEEEeCCCCEEEEEECCCC----EEEEEECCCCceeee-eeccc----------------------------------
Confidence 457889999999976544333 799999999976542 11110
Q ss_pred eEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEE
Q 003878 214 FFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCW 293 (789)
Q Consensus 214 ~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~ 293 (789)
....++|++|++.++..... ...+.++++.+.. .....
T Consensus 75 ----------------------~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~--~~~~~ 112 (301)
T d1l0qa2 75 ----------------------SPQGVAVSPDGKQVYVTNMA------------------SSTLSVIDTTSNT--VAGTV 112 (301)
T ss_dssp ----------------------SEEEEEECTTSSEEEEEETT------------------TTEEEEEETTTTE--EEEEE
T ss_pred ----------------------cccccccccccccccccccc------------------cceeeecccccce--eeeec
Confidence 13678999999999876432 2346777776542 12222
Q ss_pred ecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEE
Q 003878 294 KDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVF 373 (789)
Q Consensus 294 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l 373 (789)
.... ......++|||+++++.... ...+++++..++. ....+..........++++++.+
T Consensus 113 ~~~~---~~~~~~~~~dg~~~~~~~~~----~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 172 (301)
T d1l0qa2 113 KTGK---SPLGLALSPDGKKLYVTNNG----DKTVSVINTVTKA-------------VINTVSVGRSPKGIAVTPDGTKV 172 (301)
T ss_dssp ECSS---SEEEEEECTTSSEEEEEETT----TTEEEEEETTTTE-------------EEEEEECCSSEEEEEECTTSSEE
T ss_pred cccc---cceEEEeecCCCeeeeeecc----ccceeeeeccccc-------------eeeecccCCCceEEEeeccccce
Confidence 2222 23467899999999877633 3457778877631 11112111112234578999988
Q ss_pred EEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCee
Q 003878 374 TFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGS 452 (789)
Q Consensus 374 ~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~ 452 (789)
++.... ...+...+..... ........ ....++.+.++ +.+++.........|++||+.+++....+..+ ..
T Consensus 173 ~~~~~~---~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~ 245 (301)
T d1l0qa2 173 YVANFD---SMSISVIDTVTNS-VIDTVKVE--AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PD 245 (301)
T ss_dssp EEEETT---TTEEEEEETTTTE-EEEEEECS--SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SS
T ss_pred eeeccc---cccccccccccee-eeeccccc--CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CC
Confidence 876543 2456666665543 22333222 23456667764 45666555555568999999988876666543 23
Q ss_pred EEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 453 VNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 453 v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+..++++||++.++++.+ .-.++..||+++++
T Consensus 246 ~~~va~spdg~~l~va~~---~~~~i~v~D~~t~~ 277 (301)
T d1l0qa2 246 PAGIAVTPDGKKVYVALS---FCNTVSVIDTATNT 277 (301)
T ss_dssp EEEEEECTTSSEEEEEET---TTTEEEEEETTTTE
T ss_pred EEEEEEeCCCCEEEEEEC---CCCeEEEEECCCCe
Confidence 567889999998877643 23589999999985
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.6e-09 Score=113.56 Aligned_cols=272 Identities=13% Similarity=0.045 Sum_probs=167.7
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..|..+++||||++||-+ ++ ..|+|||+.++.......... ...+.++. .+-.+.|++
T Consensus 52 ~~V~~v~fs~~g~~latg-----~d-g~V~iWd~~~~~~~~~~~~~~---~~~h~~~I----~~v~~s~dg--------- 109 (337)
T d1gxra_ 52 EVVCAVTISNPTRHVYTG-----GK-GCVKVWDISHPGNKSPVSQLD---CLNRDNYI----RSCKLLPDG--------- 109 (337)
T ss_dssp SCCCEEEECSSSSEEEEE-----CB-SEEEEEETTSTTCCSCSEEEE---CSCTTSBE----EEEEECTTS---------
T ss_pred CcEEEEEECCCCCEEEEE-----EC-CEEEEEEccCCcccceeEEee---ecCCCCcE----EEEEEcCCC---------
Confidence 446788999999999842 22 369999998874322110000 00111111 122334666
Q ss_pred eeeEEEeeeccccceeeeeeec------------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVS------------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYY 279 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~------------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (789)
.+++++..+|+..+|.+.. .......+|+||+..++....+ ..+..
T Consensus 110 ---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-------------------~~i~~ 167 (337)
T d1gxra_ 110 ---CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD-------------------GNIAV 167 (337)
T ss_dssp ---SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT-------------------SCEEE
T ss_pred ---CEEEEeecccccccccccccccccccccccccccccccccccccccccccccc-------------------ccccc
Confidence 3677888999999998654 1112467899999888765432 24778
Q ss_pred EECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc
Q 003878 280 HFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF 359 (789)
Q Consensus 280 ~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~ 359 (789)
+++.+... ..... .+...+..+.++++|+.++.... ...+.++|+.++. .........
T Consensus 168 ~~~~~~~~--~~~~~--~~~~~v~~l~~s~~~~~~~~~~~-----d~~v~i~d~~~~~-------------~~~~~~~~~ 225 (337)
T d1gxra_ 168 WDLHNQTL--VRQFQ--GHTDGASCIDISNDGTKLWTGGL-----DNTVRSWDLREGR-------------QLQQHDFTS 225 (337)
T ss_dssp EETTTTEE--EEEEC--CCSSCEEEEEECTTSSEEEEEET-----TSEEEEEETTTTE-------------EEEEEECSS
T ss_pred cccccccc--ccccc--ccccccccccccccccccccccc-----cccccccccccce-------------eeccccccc
Confidence 88765421 12222 22334567899999999987653 3558889988742 111111111
Q ss_pred cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCC
Q 003878 360 DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN 439 (789)
Q Consensus 360 ~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~t 439 (789)
......|+|+++.|+..+. +..|..+++.+++ ......+. ..+..+.+++++.++++...++ .|++||+.+
T Consensus 226 ~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~~~~-~~~~~~~~--~~i~~v~~s~~g~~l~s~s~Dg--~i~iwd~~~ 296 (337)
T d1gxra_ 226 QIFSLGYCPTGEWLAVGME----SSNVEVLHVNKPD-KYQLHLHE--SCVLSLKFAYCGKWFVSTGKDN--LLNAWRTPY 296 (337)
T ss_dssp CEEEEEECTTSSEEEEEET----TSCEEEEETTSSC-EEEECCCS--SCEEEEEECTTSSEEEEEETTS--EEEEEETTT
T ss_pred ceEEEEEcccccccceecc----ccccccccccccc-cccccccc--cccceEEECCCCCEEEEEeCCC--eEEEEECCC
Confidence 1112347899988876543 3578889998876 23333333 5678899998777788888776 689999998
Q ss_pred CceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEEC
Q 003878 440 GSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 440 G~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl 483 (789)
++.+..+. ....+..++++++++.|+.. + .-+.+..||+
T Consensus 297 ~~~~~~~~-~~~~v~~~~~s~d~~~l~t~-s---~D~~I~vWdl 335 (337)
T d1gxra_ 297 GASIFQSK-ESSSVLSCDISVDDKYIVTG-S---GDKKATVYEV 335 (337)
T ss_dssp CCEEEEEE-CSSCEEEEEECTTSCEEEEE-E---TTSCEEEEEE
T ss_pred CCEEEEcc-CCCCEEEEEEeCCCCEEEEE-e---CCCeEEEEEE
Confidence 87654443 34567788899998866532 2 1245666664
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.28 E-value=7.8e-10 Score=112.09 Aligned_cols=253 Identities=11% Similarity=0.044 Sum_probs=144.1
Q ss_pred eEe--CCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCce-EEEEEEE
Q 003878 87 FKR--GNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSD-WATIKLM 163 (789)
Q Consensus 87 ~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~-~~~i~v~ 163 (789)
.++ |+++.|.... .||+.+..+++.+.|.+.. .....++|||||++|||+....+.. ..+|+++
T Consensus 7 sPdi~G~~v~f~~~~------dl~~~d~~~g~~~~Lt~~~-------~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~ 73 (281)
T d1k32a2 7 NPDIHGDRIIFVCCD------DLWEHDLKSGSTRKIVSNL-------GVINNARFFPDGRKIAIRVMRGSSLNTADLYFY 73 (281)
T ss_dssp EEEEETTEEEEEETT------EEEEEETTTCCEEEEECSS-------SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEE
T ss_pred CCCCCCCEEEEEeCC------cEEEEECCCCCEEEEecCC-------CcccCEEECCCCCEEEEEEeeCCCCCceEEEEE
Confidence 455 9999997531 3999988777777776643 2357899999999999998766644 5689999
Q ss_pred EcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEE
Q 003878 164 RIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWT 243 (789)
Q Consensus 164 dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~ws 243 (789)
++.+|+..+.+.... . ...+. + ....++|+
T Consensus 74 ~~~~g~~~~lt~~~~-~----------------~~~~~---------------------------~------~~~~~~~s 103 (281)
T d1k32a2 74 NGENGEIKRITYFSG-K----------------STGRR---------------------------M------FTDVAGFD 103 (281)
T ss_dssp ETTTTEEEECCCCCE-E----------------EETTE---------------------------E------CSEEEEEC
T ss_pred EecCCceEEeeecCC-C----------------ccCcc---------------------------c------cccccccC
Confidence 999997654221111 0 00000 0 13578999
Q ss_pred eCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCC
Q 003878 244 HDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCD 323 (789)
Q Consensus 244 pDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 323 (789)
|||+.|+|+..... ......++..+..+.. .... ..... ...+++||+.+++.......
T Consensus 104 pdg~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~----~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~ 162 (281)
T d1k32a2 104 PDGNLIISTDAMQP-------------FSSMTCLYRVENDGIN----FVPL-NLGPA---THILFADGRRVIGRNTFELP 162 (281)
T ss_dssp TTCCEEEEECTTSS-------------STTCCEEEEEEGGGTE----EEEC-CSCSC---SEEEEETTEEEEEESCSCCT
T ss_pred CCCCEEEEEEccCC-------------CccceeeeeecCCCce----eEEe-cCCcc---ceeeecCCCeEEEeeccccc
Confidence 99999999865431 2223345555554321 1111 11111 24567777777765433221
Q ss_pred C-------ceEEEEEECCCCCCCcccccccCCCCccEeeeccc-cceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 324 P-------VNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 324 ~-------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
. .....+...... ......... ....+.++ ++.+++..+.. ...+|+++|+++.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~l~~~d~~g~~ 225 (281)
T d1k32a2 163 HWKGYRGGTRGKIWIEVNSG--------------AFKKIVDMSTHVSSPVIV--GHRIYFITDID-GFGQIYSTDLDGKD 225 (281)
T ss_dssp TSTTCCSTTCCEEEEEEETT--------------EEEEEECCSSCCEEEEEE--TTEEEEEECTT-SSCEEEEEETTSCS
T ss_pred eeeeeccCCcceeeeecccc--------------ceeeccCCccccceeeee--ccccceecccc-cccceEEEeCCCCc
Confidence 0 001111111110 011122211 11223344 45677777664 56899999999876
Q ss_pred CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI 448 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~ 448 (789)
.+.|+.... .....++..+ +.|++ ..++ +||++|+++|+. +.|+.
T Consensus 226 -~~~lt~~~~-~~~~~~SpDG-~~I~f--~~~~--~l~~~d~~~g~~-~~i~~ 270 (281)
T d1k32a2 226 -LRKHTSFTD-YYPRHLNTDG-RRILF--SKGG--SIYIFNPDTEKI-EKIEI 270 (281)
T ss_dssp -CEECCCCCS-SCEEEEEESS-SCEEE--EETT--EEEEECTTTCCE-EECCC
T ss_pred -eEEeecCCC-cccccCcCCC-CEEEE--EeCC--EEEEEECCCCCE-EEecc
Confidence 566665542 3344444433 55655 3344 799999997776 66654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.27 E-value=1.5e-09 Score=112.74 Aligned_cols=242 Identities=6% Similarity=-0.130 Sum_probs=154.4
Q ss_pred eEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeE
Q 003878 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFF 215 (789)
Q Consensus 136 ~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 215 (789)
.++.+|||+.|||+. |+ .+.+||+.++.... .+... .+
T Consensus 22 ~~a~~~~g~~l~~~~---~~---~v~i~~~~~~~~~~-~~~~H-------~~---------------------------- 59 (311)
T d1nr0a1 22 VLGNTPAGDKIQYCN---GT---SVYTVPVGSLTDTE-IYTEH-------SH---------------------------- 59 (311)
T ss_dssp CCEECTTSSEEEEEE---TT---EEEEEETTCSSCCE-EECCC-------SS----------------------------
T ss_pred EEEEcCCCCEEEEEe---CC---EEEEEECCCCceeE-EEcCC-------CC----------------------------
Confidence 457899999999973 32 48899999875443 11111 00
Q ss_pred EEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEec
Q 003878 216 YLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD 295 (789)
Q Consensus 216 ~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~ 295 (789)
....++|||||+.|+....+ ..|.+|++.+........+..
T Consensus 60 --------------------~v~~~~~sp~g~~latg~~d-------------------g~i~iwd~~~~~~~~~~~~~~ 100 (311)
T d1nr0a1 60 --------------------QTTVAKTSPSGYYCASGDVH-------------------GNVRIWDTTQTTHILKTTIPV 100 (311)
T ss_dssp --------------------CEEEEEECTTSSEEEEEETT-------------------SEEEEEESSSTTCCEEEEEEC
T ss_pred --------------------CEEEEEEeCCCCeEeccccC-------------------ceEeeeeeecccccccccccc
Confidence 25789999999999865432 368899987765433333443
Q ss_pred CCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCCEEE
Q 003878 296 PEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFT 374 (789)
Q Consensus 296 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~~l~ 374 (789)
. ...+..+.|+|||++|+....... ..+.+++++++. ....+....+... ..|+|+|+.++
T Consensus 101 ~--~~~v~~v~~s~d~~~l~~~~~~~~---~~~~v~~~~~~~-------------~~~~l~~h~~~v~~v~~~~~~~~~l 162 (311)
T d1nr0a1 101 F--SGPVKDISWDSESKRIAAVGEGRE---RFGHVFLFDTGT-------------SNGNLTGQARAMNSVDFKPSRPFRI 162 (311)
T ss_dssp S--SSCEEEEEECTTSCEEEEEECCSS---CSEEEEETTTCC-------------BCBCCCCCSSCEEEEEECSSSSCEE
T ss_pred c--cCcccccccccccccccccccccc---cccccccccccc-------------ccccccccccccccccccccceeee
Confidence 2 234668899999999987664322 235666776642 1111222112122 33899988765
Q ss_pred EEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc------
Q 003878 375 FLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI------ 448 (789)
Q Consensus 375 ~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~------ 448 (789)
+.... ++.|..+|+.+.+....+..+ ...+..+.+++++.++++...++ .+.+|++.+++....+..
T Consensus 163 ~sgs~---d~~i~i~d~~~~~~~~~~~~~--~~~i~~v~~~p~~~~l~~~~~d~--~v~~~d~~~~~~~~~~~~~~~~~~ 235 (311)
T d1nr0a1 163 ISGSD---DNTVAIFEGPPFKFKSTFGEH--TKFVHSVRYNPDGSLFASTGGDG--TIVLYNGVDGTKTGVFEDDSLKNV 235 (311)
T ss_dssp EEEET---TSCEEEEETTTBEEEEEECCC--SSCEEEEEECTTSSEEEEEETTS--CEEEEETTTCCEEEECBCTTSSSC
T ss_pred ccccc---ccccccccccccccccccccc--cccccccccCccccccccccccc--cccccccccccccccccccccccc
Confidence 54433 356888999876522222222 35678899998777777777776 688899887765443322
Q ss_pred -CCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 449 -EIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 449 -~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
..+.|..++++++++.++.. + .-+.++.||+.+++
T Consensus 236 ~h~~~V~~~~~s~~~~~l~tg-s---~Dg~v~iwd~~t~~ 271 (311)
T d1nr0a1 236 AHSGSVFGLTWSPDGTKIASA-S---ADKTIKIWNVATLK 271 (311)
T ss_dssp SSSSCEEEEEECTTSSEEEEE-E---TTSEEEEEETTTTE
T ss_pred cccccccccccCCCCCEEEEE-e---CCCeEEEEECCCCc
Confidence 14567888999999866532 2 23589999998885
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Probab=99.25 E-value=5.6e-12 Score=130.86 Aligned_cols=126 Identities=12% Similarity=0.030 Sum_probs=84.9
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEe---cCCcccccccccccCCccchhhc-CCC--CcHHHHHHHHhcC
Q 003878 614 YTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALA---HVGVMDMLRYHKFTIGHAWVSDF-GCS--EEEEEFYWLIKYS 687 (789)
Q Consensus 614 ~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~---~~p~~d~~~~~~~~~~~~~~~e~-g~p--~~~~~~~~l~~~s 687 (789)
-+||+||+|+|+|+||+|+..++..+|++|+++++ ..|+........ ....+ +.+ ..+.........+
T Consensus 7 ~iDp~rI~V~G~SsGG~mA~~la~a~sd~f~aga~vvAg~p~~ca~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 80 (318)
T d2d81a1 7 NVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYY------TSCMYNGYPSITTPTANMKSWSGN 80 (318)
T ss_dssp CEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTTSSSCG------GGGSTTCCCCCHHHHHHHHHHBTT
T ss_pred CCCccceEEEEECHHHHHHHHHHHhcccceeeeEEEeccCchhhhcccch------HHHhhcCCCCCcChhHHHHHHhhc
Confidence 37999999999999999999999999999975433 233221111110 00001 111 2222233333334
Q ss_pred cccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCC
Q 003878 688 PLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVG 762 (789)
Q Consensus 688 P~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~ 762 (789)
.+..+... ..+|+||+||.+|.+||+.++.+++++|++. ..+..+.++.++++||++.
T Consensus 81 ~i~~~~~~---------~~~pvll~hG~~D~~Vpp~~s~~l~~~l~~~--------~~~~~v~yv~~~gagH~fp 138 (318)
T d2d81a1 81 QIASVANL---------GQRKIYMWTGSSDTTVGPNVMNQLKAQLGNF--------DNSANVSYVTTTGAVHTFP 138 (318)
T ss_dssp TBCCGGGG---------GGCEEEEEEETTCCSSCHHHHHHHHHHHTTT--------SCGGGEEEEEETTCCSSEE
T ss_pred CCcchhcc---------CCCCEEEEecCCCCCcCHHHHHHHHHHHHcC--------cCCCceEEEEeCCCCCCCC
Confidence 44443332 3689999999999999999999999999875 1245689999999999873
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.22 E-value=4.8e-10 Score=114.84 Aligned_cols=244 Identities=14% Similarity=0.082 Sum_probs=147.3
Q ss_pred CCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccc
Q 003878 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYL 208 (789)
Q Consensus 129 ~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (789)
+|...|..+++||||++||-+ +...+|++||+++++.+.. +... |. +
T Consensus 10 GH~~~V~~l~~s~dg~~l~s~-----s~Dg~v~vWd~~~~~~~~~-~~~~-----h~-~--------------------- 56 (299)
T d1nr0a2 10 GHNKAITALSSSADGKTLFSA-----DAEGHINSWDISTGISNRV-FPDV-----HA-T--------------------- 56 (299)
T ss_dssp CCSSCEEEEEECTTSSEEEEE-----ETTSCEEEEETTTCCEEEC-SSCS-----CS-S---------------------
T ss_pred CCCCCcEEEEECCCCCEEEEE-----cCCCeEEEEECCCCcEEEE-EcCC-----CC-C---------------------
Confidence 455568899999999998843 3334799999999876532 2111 00 0
Q ss_pred ccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC
Q 003878 209 RGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE 288 (789)
Q Consensus 209 ~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~ 288 (789)
....++|+|||+.+. ... ...+.++++......
T Consensus 57 ---------------------------~v~~v~~~~~g~~~~-~~~-------------------d~~v~~~~~~~~~~~ 89 (299)
T d1nr0a2 57 ---------------------------MITGIKTTSKGDLFT-VSW-------------------DDHLKVVPAGGSGVD 89 (299)
T ss_dssp ---------------------------CEEEEEECTTSCEEE-EET-------------------TTEEEEECSSSSSSC
T ss_pred ---------------------------cEEEEEeeccceeec-ccc-------------------eeeEEEeccCCcccc
Confidence 246899999997543 322 224667766543211
Q ss_pred c-EEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEe
Q 003878 289 D-ILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIA 367 (789)
Q Consensus 289 ~-~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s 367 (789)
. ..+.... ......+.++|||+.++.... ..+.+++... ..............++
T Consensus 90 ~~~~~~~~~--~~~~~~~~~s~~g~~~~~~~~------~~i~~~~~~~----------------~~~~~~~~~~~~~~~s 145 (299)
T d1nr0a2 90 SSKAVANKL--SSQPLGLAVSADGDIAVAACY------KHIAIYSHGK----------------LTEVPISYNSSCVALS 145 (299)
T ss_dssp TTSCCEEEC--SSCEEEEEECTTSSCEEEEES------SEEEEEETTE----------------EEEEECSSCEEEEEEC
T ss_pred ccccccccc--ccccccccccccccccccccc------cccccccccc----------------cccccccccccccccc
Confidence 1 1111111 122456889999998776542 3466666432 1111122222234488
Q ss_pred cCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec-
Q 003878 368 NDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL- 446 (789)
Q Consensus 368 ~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l- 446 (789)
|+++.|+..+. +..|..+|+.++. ...+........+..+.+++++..+++...++ .|++|++.++.....+
T Consensus 146 ~~~~~l~~g~~----dg~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~~~~~~~~~~~~~~~ 218 (299)
T d1nr0a2 146 NDKQFVAVGGQ----DSKVHVYKLSGAS-VSEVKTIVHPAEITSVAFSNNGAFLVATDQSR--KVIPYSVANNFELAHTN 218 (299)
T ss_dssp TTSCEEEEEET----TSEEEEEEEETTE-EEEEEEEECSSCEEEEEECTTSSEEEEEETTS--CEEEEEGGGTTEESCCC
T ss_pred ccccccccccc----ccccccccccccc-cccccccccccccccccccccccccccccccc--ccccccccccccccccc
Confidence 99998876543 3578888887664 22221111124578889988667777777776 6889998766543322
Q ss_pred --ccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 447 --PIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 447 --~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
..+...+..++++++++.++..- .-+.++.||+.+++
T Consensus 219 ~~~~h~~~v~~l~~s~~~~~l~sgs----~dg~i~iwd~~~~~ 257 (299)
T d1nr0a2 219 SWTFHTAKVACVSWSPDNVRLATGS----LDNSVIVWNMNKPS 257 (299)
T ss_dssp CCCCCSSCEEEEEECTTSSEEEEEE----TTSCEEEEETTCTT
T ss_pred cccccccccccccccccccceEEEc----CCCEEEEEECCCCC
Confidence 22355677888999998766432 22579999998764
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.22 E-value=1.3e-09 Score=113.34 Aligned_cols=274 Identities=11% Similarity=0.039 Sum_probs=157.9
Q ss_pred EeCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCC
Q 003878 88 KRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIED 167 (789)
Q Consensus 88 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~t 167 (789)
++|+.++|.. + .. +++.+..+.+...++. ++...+..+++||||++||.+. ...+|++||+.+
T Consensus 27 ~~g~~l~~~~---~-~~--v~i~~~~~~~~~~~~~------~H~~~v~~~~~sp~g~~latg~-----~dg~i~iwd~~~ 89 (311)
T d1nr0a1 27 PAGDKIQYCN---G-TS--VYTVPVGSLTDTEIYT------EHSHQTTVAKTSPSGYYCASGD-----VHGNVRIWDTTQ 89 (311)
T ss_dssp TTSSEEEEEE---T-TE--EEEEETTCSSCCEEEC------CCSSCEEEEEECTTSSEEEEEE-----TTSEEEEEESSS
T ss_pred CCCCEEEEEe---C-CE--EEEEECCCCceeEEEc------CCCCCEEEEEEeCCCCeEeccc-----cCceEeeeeeec
Confidence 4778877742 1 12 4454433333322332 2334588899999999998433 234799999998
Q ss_pred Cceecc-cccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeecccccceEEEEeCC
Q 003878 168 QIVEAD-ALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDS 246 (789)
Q Consensus 168 g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg 246 (789)
+..... .+... . + ....++|+|||
T Consensus 90 ~~~~~~~~~~~~------~----------------~---------------------------------~v~~v~~s~d~ 114 (311)
T d1nr0a1 90 TTHILKTTIPVF------S----------------G---------------------------------PVKDISWDSES 114 (311)
T ss_dssp TTCCEEEEEECS------S----------------S---------------------------------CEEEEEECTTS
T ss_pred cccccccccccc------c----------------C---------------------------------ccccccccccc
Confidence 854321 11111 0 0 24689999999
Q ss_pred cEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCce
Q 003878 247 KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVN 326 (789)
Q Consensus 247 ~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~ 326 (789)
+.|+..... ....+.++++.+......+ . .+...+..+.|+|+|++++++... ..
T Consensus 115 ~~l~~~~~~-----------------~~~~~~v~~~~~~~~~~~l--~--~h~~~v~~v~~~~~~~~~l~sgs~----d~ 169 (311)
T d1nr0a1 115 KRIAAVGEG-----------------RERFGHVFLFDTGTSNGNL--T--GQARAMNSVDFKPSRPFRIISGSD----DN 169 (311)
T ss_dssp CEEEEEECC-----------------SSCSEEEEETTTCCBCBCC--C--CCSSCEEEEEECSSSSCEEEEEET----TS
T ss_pred ccccccccc-----------------ccccccccccccccccccc--c--ccccccccccccccceeeeccccc----cc
Confidence 998876432 1223556677655433221 2 223346678999999987665543 24
Q ss_pred EEEEEECCCCCCCcccccccCCCCccEeeeccccc-eeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCC-
Q 003878 327 KVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEA- 404 (789)
Q Consensus 327 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~- 404 (789)
.|.++|+.++. ........... ....++|+|+.|+..+. +..|..+++..+.....+-...
T Consensus 170 ~i~i~d~~~~~-------------~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~~~~~~~~~~~ 232 (311)
T d1nr0a1 170 TVAIFEGPPFK-------------FKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTGVFEDDSL 232 (311)
T ss_dssp CEEEEETTTBE-------------EEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEEECBCTTS
T ss_pred ccccccccccc-------------cccccccccccccccccCccccccccccc----ccccccccccccccccccccccc
Confidence 48888988632 11111111111 12348999998876543 3568888887765222211110
Q ss_pred ----CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC---CeeEEEeecccCCcEEEEEEcCCCCCcE
Q 003878 405 ----ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE---IGSVNAISARREDSVVFISFTSFLIPGI 477 (789)
Q Consensus 405 ----~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~---~~~v~~~s~s~d~~~l~~~~ss~~~P~~ 477 (789)
....+..+.+++++..+++...|+ .|++||+.+++.++.+... ...+..+.+ +++.++ +.+ .-+.
T Consensus 233 ~~~~h~~~V~~~~~s~~~~~l~tgs~Dg--~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~-s~s---~dG~ 304 (311)
T d1nr0a1 233 KNVAHSGSVFGLTWSPDGTKIASASADK--TIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALV-SIS---ANGF 304 (311)
T ss_dssp SSCSSSSCEEEEEECTTSSEEEEEETTS--EEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEE-EEE---TTCC
T ss_pred ccccccccccccccCCCCCEEEEEeCCC--eEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEE-EEE---CCCE
Confidence 123577899998777777888777 6999999989876666543 122323433 344333 222 2356
Q ss_pred EEEEEC
Q 003878 478 VYQCNL 483 (789)
Q Consensus 478 ly~~dl 483 (789)
+..||+
T Consensus 305 i~~wd~ 310 (311)
T d1nr0a1 305 INFVNP 310 (311)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 666665
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.22 E-value=5.2e-09 Score=110.60 Aligned_cols=130 Identities=8% Similarity=-0.059 Sum_probs=80.7
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccccee
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFF 213 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 213 (789)
+...++||||++++++.....+...+++++|.+|++.+.. +..-
T Consensus 23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-~~~~----------------------------------- 66 (373)
T d2madh_ 23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-VNGG----------------------------------- 66 (373)
T ss_pred ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-EeCC-----------------------------------
Confidence 4567799999999776544444457899999999987752 2211
Q ss_pred eEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEE
Q 003878 214 FFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCW 293 (789)
Q Consensus 214 ~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~ 293 (789)
....++|||||++|++....... .........|.++++.+.+... ..
T Consensus 67 ----------------------~~~~~a~SpDG~~l~va~~~~~~---------~~~~~~~~~v~v~D~~t~~~~~--~~ 113 (373)
T d2madh_ 67 ----------------------FLPNPVAAHSGSEFALASTSFSR---------IAKGKRTDYVEVFDPVTFLPIA--DI 113 (373)
T ss_pred ----------------------CCccEEEcCCCCEEEEEeecCCc---------ccccccceEEEEEECCCCcEEE--EE
Confidence 13579999999999998654311 0112234568888887654321 11
Q ss_pred ecCCCCee-----EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCC
Q 003878 294 KDPEHPKY-----IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSA 335 (789)
Q Consensus 294 ~~~~~~~~-----~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~ 335 (789)
..+..... ...+.+++||+++++...... +.+.+++..+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~---~~~~~~~~~~ 157 (373)
T d2madh_ 114 ELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG---PAVGLVVQGG 157 (373)
T ss_pred ecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCC---CceEEeeccC
Confidence 21211111 124679999999987765432 4455666554
|
| >d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein VC1974 domain: Hypothetical protein VC1974 species: Vibrio cholerae [TaxId: 666]
Probab=99.18 E-value=2.6e-10 Score=113.15 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=68.4
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCC
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 614 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~ 614 (789)
.++.|+||++||..+... .|.. ....|.+.||.|+++|.||.|...... .....+...+...+.....
T Consensus 13 ~~~~P~ivllHG~~~~~~--~~~~-~~~~L~~~g~~vi~~Dl~G~G~s~~~~---------~~~~~~~~~~~~~~~~~~~ 80 (264)
T d1r3da_ 13 TARTPLVVLVHGLLGSGA--DWQP-VLSHLARTQCAALTLDLPGHGTNPERH---------CDNFAEAVEMIEQTVQAHV 80 (264)
T ss_dssp BTTBCEEEEECCTTCCGG--GGHH-HHHHHTTSSCEEEEECCTTCSSCC----------------CHHHHHHHHHHHTTC
T ss_pred CCCCCeEEEeCCCCCCHH--HHHH-HHHHHHhCCCEEEEEeccccccccccc---------ccccchhhhhhhhcccccc
Confidence 356689999999876543 3444 345565589999999999987543211 1111122222233333333
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecC
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV 650 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~ 650 (789)
....++.++|||+||.++..++.++|+....++...
T Consensus 81 ~~~~~~~lvGhS~Gg~ia~~~a~~~~~~~~~~~~~~ 116 (264)
T d1r3da_ 81 TSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAI 116 (264)
T ss_dssp CTTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEE
T ss_pred cccCceeeeeecchHHHHHHHHHhCchhcccccccc
Confidence 455789999999999999999999999877776543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.17 E-value=3.3e-10 Score=118.65 Aligned_cols=185 Identities=13% Similarity=0.040 Sum_probs=120.6
Q ss_pred EEeCC-CCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeE
Q 003878 137 VSVSE-DAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFF 215 (789)
Q Consensus 137 ~~~Sp-Dg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 215 (789)
..+|| ||+++|++.+ | +|++||+++|..++.. ...
T Consensus 8 ~~fSP~dG~~~a~~~~--g----~v~v~d~~~~~~~~~~-~~~------------------------------------- 43 (360)
T d1k32a3 8 EDFSPLDGDLIAFVSR--G----QAFIQDVSGTYVLKVP-EPL------------------------------------- 43 (360)
T ss_dssp EEEEECGGGCEEEEET--T----EEEEECTTSSBEEECS-CCS-------------------------------------
T ss_pred ccccCCCCCEEEEEEC--C----eEEEEECCCCcEEEcc-CCC-------------------------------------
Confidence 45899 9999999753 3 7999999998766421 111
Q ss_pred EEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEec
Q 003878 216 YLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD 295 (789)
Q Consensus 216 ~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~ 295 (789)
....++|||||+.|+++..+. ...|+++++.++..+ .+ .
T Consensus 44 --------------------~v~~~~~spDg~~l~~~~~~~-----------------g~~v~v~d~~~~~~~--~~-~- 82 (360)
T d1k32a3 44 --------------------RIRYVRRGGDTKVAFIHGTRE-----------------GDFLGIYDYRTGKAE--KF-E- 82 (360)
T ss_dssp --------------------CEEEEEECSSSEEEEEEEETT-----------------EEEEEEEETTTCCEE--EC-C-
T ss_pred --------------------CEEEEEECCCCCEEEEEEcCC-----------------CCEEEEEECCCCcEE--Ee-e-
Confidence 257899999999999885432 235888998775422 22 2
Q ss_pred CCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-cceeEEEecCCCEEE
Q 003878 296 PEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQYEVIANDDTVFT 374 (789)
Q Consensus 296 ~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~s~dG~~l~ 374 (789)
.+...+..+.|||||++|+.... ...++++++.++. ....+.... ......|+|||+.|+
T Consensus 83 -~~~~~v~~~~~spdg~~l~~~~~-----~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~spdg~~la 143 (360)
T d1k32a3 83 -ENLGNVFAMGVDRNGKFAVVAND-----RFEIMTVDLETGK-------------PTVIERSREAMITDFTISDNSRFIA 143 (360)
T ss_dssp -CCCCSEEEEEECTTSSEEEEEET-----TSEEEEEETTTCC-------------EEEEEECSSSCCCCEEECTTSCEEE
T ss_pred -CCCceEEeeeecccccccceecc-----ccccccccccccc-------------eeeeeecccccccchhhccceeeee
Confidence 23344668899999999998763 3568899998742 111111111 112356999999998
Q ss_pred EEECCC------CCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCC
Q 003878 375 FLTNKD------APKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDV 428 (789)
Q Consensus 375 ~~tn~~------~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g 428 (789)
+..... .....+..+++.+++ ...++.+. .....+.+++++..++....++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~v~d~~~~~-~~~~~~~~--~~~~~~~~spdg~~l~~~s~~~ 200 (360)
T d1k32a3 144 YGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTEN--SHDYAPAFDADSKNLYYLSYRS 200 (360)
T ss_dssp EEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSS--SBEEEEEECTTSCEEEEEESCC
T ss_pred eeccccccceeeccccceeeeccccCc-eeeecccc--cccccccccCCCCEEEEEeCCC
Confidence 876432 235678889998765 33444333 4456677888655555555444
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.17 E-value=1.2e-09 Score=120.17 Aligned_cols=301 Identities=11% Similarity=0.024 Sum_probs=158.0
Q ss_pred eEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeE
Q 003878 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFF 215 (789)
Q Consensus 136 ~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 215 (789)
++.|++||+++. ...| .|+++|++||+.... +.... +..... -..+..+.||++ +
T Consensus 21 ~~~W~~d~~~~~---~~~~----~~~~~~~~t~~~~~~-~~~~~--~~~~~~----~i~~~~~SpDg~-----------~ 75 (470)
T d2bgra1 21 SLRWISDHEYLY---KQEN----NILVFNAEYGNSSVF-LENST--FDEFGH----SINDYSISPDGQ-----------F 75 (470)
T ss_dssp CCEECSSSEEEE---ESSS----CEEEEETTTCCEEEE-ECTTT--TTTSSS----CCCEEEECTTSS-----------E
T ss_pred CCEeCCCCEEEE---EcCC----cEEEEECCCCCEEEE-Echhh--hhhccC----ccceeEECCCCC-----------E
Confidence 577999998663 2223 589999999975421 11110 000000 012344669997 6
Q ss_pred EEeeeccc------cceeeeeeec-----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEE
Q 003878 216 YLFSLVKS------TIYSFWSVVS-----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFY 278 (789)
Q Consensus 216 ~~~~s~~~------g~~~l~~~~~-----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (789)
+||.++.. ...++|..++ .-....+.|||||+.|+|.+.. .++
T Consensus 76 i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~--------------------~l~ 135 (470)
T d2bgra1 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNN--------------------DIY 135 (470)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETT--------------------EEE
T ss_pred EEEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccCcceeeEeecc--------------------cce
Confidence 77777532 2334454444 1123678999999999998542 367
Q ss_pred EEECCCCCCCcEEEEecCC--------------CCeeEEEEEEecCCcEEEEEEEcCCCC--------------------
Q 003878 279 YHFLGTKQSEDILCWKDPE--------------HPKYIFSGHVTEDGQYLVMCIEENCDP-------------------- 324 (789)
Q Consensus 279 ~~~lg~~~~~~~~~~~~~~--------------~~~~~~~~~~SpDG~~l~~~~~~~~~~-------------------- 324 (789)
++++.++.....+....++ .......+.|||||++|++...+....
T Consensus 136 ~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~ 215 (470)
T d2bgra1 136 VKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVR 215 (470)
T ss_dssp EESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEE
T ss_pred EEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeee
Confidence 7666554322111100000 001112467999999999987543211
Q ss_pred -----------ceEEEEEECCCCCCCcccccccCCCCccEeeec-----cccce---eEEEecCCCEEEEEECCCCCC--
Q 003878 325 -----------VNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-----GFDAQ---YEVIANDDTVFTFLTNKDAPK-- 383 (789)
Q Consensus 325 -----------~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-----~~~~~---~~~~s~dG~~l~~~tn~~~~~-- 383 (789)
...++++++.++... ......... ..... ...|.++++.+++..++....
T Consensus 216 ~~~~~~g~~~~~~~~~v~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~ 286 (470)
T d2bgra1 216 VPYPKAGAVNPTVKFFVVNTDSLSSV---------TNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSV 286 (470)
T ss_dssp EECCBTTSCCCEEEEEEEEGGGCCSS---------SCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEE
T ss_pred eccccccccCCcceEEEEECCCccee---------eeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceE
Confidence 112334444332100 000000000 00001 134788887666666664332
Q ss_pred ceEEEEECCCCCCeEEeccCC-----CCce-----eeeEEEe--cCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCe
Q 003878 384 YKIIRVDLKEPNDWFEVIPEA-----ERDV-----LESATAV--NLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIG 451 (789)
Q Consensus 384 ~~L~~~dl~~~~~~~~l~~~~-----~~~~-----i~~v~~~--~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~ 451 (789)
..++.+|..++. +..++... .... -....+. .++.+++....++..+|++++.+ |...+.++....
T Consensus 287 ~~~~~~d~~tg~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~-g~~~~~lt~g~~ 364 (470)
T d2bgra1 287 MDICDYDESSGR-WNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQID-KKDCTFITKGTW 364 (470)
T ss_dssp EEEEEEETTTTE-EEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETT-CSCCEESCCSSS
T ss_pred EEEEEecCCCCc-EEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEecc-CCceeeeccCCe
Confidence 345666666554 33332110 0000 0112222 22445677778888999999997 444477776666
Q ss_pred eEEEeecccCCcEEEEEEcCCC-CCc--EEEEEECCCCCceEEEee
Q 003878 452 SVNAISARREDSVVFISFTSFL-IPG--IVYQCNLKTETPEMKIFR 494 (789)
Q Consensus 452 ~v~~~s~s~d~~~l~~~~ss~~-~P~--~ly~~dl~tg~~~~~~l~ 494 (789)
.+..+ .+.+++.++|+.+... .|. .||++++.++. +.+.|+
T Consensus 365 ~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~-~~~~lt 408 (470)
T d2bgra1 365 EVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYT-KVTCLS 408 (470)
T ss_dssp CEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTT-CEEESS
T ss_pred eEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCC-ceeEec
Confidence 66554 3456778888765432 344 58999987654 355554
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.16 E-value=7.9e-09 Score=108.09 Aligned_cols=300 Identities=12% Similarity=0.076 Sum_probs=162.9
Q ss_pred CCCceEeCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEec-----CCceE
Q 003878 83 YDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSY-----SGSDW 157 (789)
Q Consensus 83 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~-----~g~~~ 157 (789)
..+|.++|.++|..-...+.....+|+.+...++..-.++.. . ...++|||||++|+++... .|...
T Consensus 6 ~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g------~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d 77 (355)
T d2bbkh_ 6 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG------F--LPNPVVADDGSFIAHASTVFSRIARGERT 77 (355)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC------S--SCEEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred eEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC------C--CCceEEcCCCCEEEEEeCCCccccccCCC
Confidence 467889999986543333344456888775544422222221 1 1257899999999876542 23445
Q ss_pred EEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeeccccc
Q 003878 158 ATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQFKF 237 (789)
Q Consensus 158 ~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~~~ 237 (789)
..|++||+++++.+........ ....+.. ..
T Consensus 78 ~~v~v~D~~t~~~~~~~~~~~~---------------~~~~~~~----------------------------------~~ 108 (355)
T d2bbkh_ 78 DYVEVFDPVTLLPTADIELPDA---------------PRFLVGT----------------------------------YP 108 (355)
T ss_dssp EEEEEECTTTCCEEEEEEETTC---------------CCCCBSC----------------------------------CG
T ss_pred CEEEEEECCCCCEEEEEecCCc---------------ceeecCC----------------------------------CC
Confidence 7899999999976542110000 0000000 13
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCe-----eEEEEEEecCCc
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPK-----YIFSGHVTEDGQ 312 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~-----~~~~~~~SpDG~ 312 (789)
..++|+|||+.+++.... ....++.++..+.... .....+.... ....+.+++||+
T Consensus 109 ~~~~~s~dg~~~~v~~~~-----------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~dg~ 169 (355)
T d2bbkh_ 109 WMTSLTPDGKTLLFYQFS-----------------PAPAVGVVDLEGKAFK--RMLDVPDCYHIFPTAPDTFFMHCRDGS 169 (355)
T ss_dssp GGEEECTTSSEEEEEECS-----------------SSCEEEEEETTTTEEE--EEEECCSEEEEEEEETTEEEEEETTSC
T ss_pred ceEEEecCCCeeEEecCC-----------------CCceeeeeecCCCcEe--eEEecCCcceEeecCCcceEEEcCCCC
Confidence 578999999999876432 1234555555543211 1111111000 012357899999
Q ss_pred EEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECC
Q 003878 313 YLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLK 392 (789)
Q Consensus 313 ~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~ 392 (789)
.+++..... ..+.+.+..+.... ..... ....+++++..+++.+. ..+++.+++.
T Consensus 170 ~~~v~~~~~----~~~~~~~~~~~~~~------------~~~~~-----~~~~~~~~~~~~~~~~~----~~~~~v~~~~ 224 (355)
T d2bbkh_ 170 LAKVAFGTE----GTPEITHTEVFHPE------------DEFLI-----NHPAYSQKAGRLVWPTY----TGKIHQIDLS 224 (355)
T ss_dssp EEEEECCSS----SCCEEEECCCCSCT------------TSCBC-----SCCEEETTTTEEEEEBT----TSEEEEEECT
T ss_pred EEEEEecCC----CeEEEEecccccce------------eccee-----eeccccCCCCeEEEecC----CCeEEEEecC
Confidence 987765432 22344454442100 00000 11224555666665432 3567777776
Q ss_pred CCCCeEEeccCCC-----------CceeeeEEEecC-CEEEEEEEeC-------CeEEEEEEECCCCceeeecccCCeeE
Q 003878 393 EPNDWFEVIPEAE-----------RDVLESATAVNL-NQMIVSYLSD-------VKYVLQIRDLKNGSLLHQLPIEIGSV 453 (789)
Q Consensus 393 ~~~~~~~l~~~~~-----------~~~i~~v~~~~~-~~lv~~~~~~-------g~~~L~~~dl~tG~~~~~l~~~~~~v 453 (789)
++. ...+..... ......++++++ ..+++..... +...|++||+.+++.+..+..+ ..+
T Consensus 225 ~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~-~~~ 302 (355)
T d2bbkh_ 225 SGD-AKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEI 302 (355)
T ss_dssp TSS-CEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEE
T ss_pred CCc-EEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCC-CCE
Confidence 654 111111000 001123566664 4555554443 2368999999988876666543 345
Q ss_pred EEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 454 NAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 454 ~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
..+.++||++.+++...+ ....|+.||.++++
T Consensus 303 ~~~a~spDG~~~l~v~~~--~d~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 303 DSINVSQDEKPLLYALST--GDKTLYIHDAESGE 334 (355)
T ss_dssp CEEEECCSSSCEEEEEET--TTTEEEEEETTTCC
T ss_pred EEEEEcCCCCeEEEEEEC--CCCEEEEEECCCCC
Confidence 578899999876655443 34799999999996
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.15 E-value=6.2e-09 Score=105.59 Aligned_cols=282 Identities=12% Similarity=0.066 Sum_probs=159.1
Q ss_pred CCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccc
Q 003878 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYL 208 (789)
Q Consensus 129 ~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (789)
++...|..+++||||++||- |++..+|+|||+.+++.+. .+... .+. ..+..+.|++.
T Consensus 15 GH~~~I~~l~~sp~~~~l~s-----~s~Dg~i~iWd~~~~~~~~-~~~~h-------~~~----V~~~~~~~~~~----- 72 (317)
T d1vyhc1 15 GHRSPVTRVIFHPVFSVMVS-----ASEDATIKVWDYETGDFER-TLKGH-------TDS----VQDISFDHSGK----- 72 (317)
T ss_dssp CCSSCEEEEEECSSSSEEEE-----EESSSCEEEEETTTCCCCE-EECCC-------SSC----EEEEEECTTSS-----
T ss_pred CCCCCeEEEEEcCCCCEEEE-----EeCCCeEEEEECCCCCEEE-EEeCC-------CCc----EEEEeeecccc-----
Confidence 34456889999999999873 3334579999999986543 22211 000 11122234442
Q ss_pred ccceeeEEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEE
Q 003878 209 RGIFFFFYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFY 278 (789)
Q Consensus 209 ~~~~~~~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (789)
+++.+...++..+|.... ........|+|+++.++....+ ..+.
T Consensus 73 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-------------------~~~~ 126 (317)
T d1vyhc1 73 -------LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD-------------------KTIK 126 (317)
T ss_dssp -------EEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETT-------------------SEEE
T ss_pred -------cccccccccccccccccccccccccccccccceeeeccCCCceEEeeccC-------------------ccee
Confidence 344445555555544332 1123568899999988765432 3577
Q ss_pred EEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-
Q 003878 279 YHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID- 357 (789)
Q Consensus 279 ~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~- 357 (789)
++++.+... ...+... ......+.++|||++|+....+ ..+.++++.++... ..+.. .......+.-
T Consensus 127 ~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d-----~~v~~~~~~~~~~~-~~~~~--~~~~i~~~~~~ 194 (317)
T d1vyhc1 127 MWEVQTGYC--VKTFTGH--REWVRMVRPNQDGTLIASCSND-----QTVRVWVVATKECK-AELRE--HRHVVECISWA 194 (317)
T ss_dssp EEETTTCCE--EEEEECC--SSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTCCEE-EEECC--CSSCEEEEEEC
T ss_pred Eeeccccee--eeEEccC--CCcceeeecccCCCEEEEEeCC-----CeEEEEeeccceee-EEEec--CCCCceEEEEe
Confidence 788876532 2333332 2335678999999998766533 34777777653200 00000 0000000000
Q ss_pred ----------cccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeC
Q 003878 358 ----------GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSD 427 (789)
Q Consensus 358 ----------~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~ 427 (789)
...........++..++..+ .+..|..+++.++.....+..+. ..+..+.+++++.++++...+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~i~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~~d 268 (317)
T d1vyhc1 195 PESSYSSISEATGSETKKSGKPGPFLLSGS----RDKTIKMWDVSTGMCLMTLVGHD--NWVRGVLFHSGGKFILSCADD 268 (317)
T ss_dssp CSCGGGGGGGCCSCC-------CCEEEEEE----TTSEEEEEETTTTEEEEEEECCS--SCEEEEEECSSSSCEEEEETT
T ss_pred eccccceeeccccceeeeeccCCceeEecc----CCCEEEEEECCCCcEEEEEeCCC--CCEEEEEECCCCCEEEEEECC
Confidence 00000011222344443322 23578888988775334444333 567888898877778888888
Q ss_pred CeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEE
Q 003878 428 VKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 428 g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~d 482 (789)
+ .|.+||+.+++.+..+..+...|..++++++++.|+.. +. -+.++.||
T Consensus 269 g--~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~-s~---Dg~i~iWd 317 (317)
T d1vyhc1 269 K--TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG-SV---DQTVKVWE 317 (317)
T ss_dssp T--EEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEE-ET---TSEEEEEC
T ss_pred C--eEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE-eC---CCeEEEeC
Confidence 7 79999999888767776666778889999999866532 21 24565553
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=99.15 E-value=3.3e-12 Score=132.74 Aligned_cols=228 Identities=9% Similarity=-0.061 Sum_probs=119.8
Q ss_pred EEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCH----HHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcc
Q 003878 522 IPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV----SRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQN 597 (789)
Q Consensus 522 i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~----~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~ 597 (789)
+.+..+.|.+ .++.|+ |++||+++.+..+...+ .+.+++.++||.|+++|+||.|..+.........
T Consensus 46 ~~v~~~~p~~---~~~~Pv-vllHG~~~~~~~w~~~~~~~~~~~~~~~~~Gy~V~~~D~~G~G~S~~~~~~~~~~----- 116 (318)
T d1qlwa_ 46 MYVRYQIPQR---AKRYPI-TLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAV----- 116 (318)
T ss_dssp EEEEEEEETT---CCSSCE-EEECCTTCCGGGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHH-----
T ss_pred EEEEEECCCC---CCCCcE-EEECCCCCCcCccccCcccchhHHHHHHhCCCEEEEecCCCCCCCCCccccCCHH-----
Confidence 4455566764 346674 56899987765543221 2344555599999999999999876543221111
Q ss_pred hHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCc-eeEEEecCCcccccccccccC-Cc----cchhhc
Q 003878 598 CFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDL-FGCALAHVGVMDMLRYHKFTI-GH----AWVSDF 671 (789)
Q Consensus 598 ~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~-f~a~v~~~p~~d~~~~~~~~~-~~----~~~~e~ 671 (789)
+....+..++..-.....++++.|+|+||.++..++...+.. ...+++..++........... .. ......
T Consensus 117 ---~~~~~~~~~l~~~~~~~~~~~~~g~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (318)
T d1qlwa_ 117 ---KLGKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIKL 193 (318)
T ss_dssp ---HTTSSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhhcCccccceeeEeccccccccchhhhhhhHHHHHHHHhhh
Confidence 111111111111112345677789999988877666544321 111111111111110000000 00 000000
Q ss_pred CC-------CCcHHHHHHHHh----------------cCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcH-----
Q 003878 672 GC-------SEEEEEFYWLIK----------------YSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPL----- 723 (789)
Q Consensus 672 g~-------p~~~~~~~~l~~----------------~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~----- 723 (789)
+. ......+..... .+|...... ...|+|+++|++|.++|++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~P~Lii~G~~D~~~p~~~~~~~ 263 (318)
T d1qlwa_ 194 DGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGECPKPEDVKPL----------TSIPVLVVFGDHIEEFPRWAPRLK 263 (318)
T ss_dssp TSEEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCCCCGGGCGGG----------TTSCEEEEECSSCTTCTTTHHHHH
T ss_pred ccccchhhhcccchhhhhhhhhhhHHHHHHhhhcccccchhhhhhh----------ccCCEEEEecCcCcccChhhhHHH
Confidence 00 000000000000 012222222 2679999999999999954
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCC-----CCcCCCCchhhHHHHHHHHHHHHHHH
Q 003878 724 HSLKLLATMQYVLCTSLENSPQTNPIIGRIERK-----AGHGVGLPTQKMIDEAADRYGFMAKM 782 (789)
Q Consensus 724 ~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~-----~gH~~~~~~~~~~~~~~~~~~fl~~~ 782 (789)
++..++++|+++ |.++++..+|+ +||......+. .+..+.+.+||+++
T Consensus 264 ~~~~~~~~l~~~----------g~~~~~~~lp~~gi~G~gH~~~~e~~~-~~va~~i~~wL~~~ 316 (318)
T d1qlwa_ 264 ACHAFIDALNAA----------GGKGQLMSLPALGVHGNSHMMMQDRNN-LQVADLILDWIGRN 316 (318)
T ss_dssp HHHHHHHHHHHT----------TCCEEEEEGGGGTCCCCCTTGGGSTTH-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh----------CCCcEEEEecccccCCCcCccccCcCH-HHHHHHHHHHHHhc
Confidence 456678888887 88999999774 56986544432 46678899999876
|
| >d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
Probab=99.14 E-value=4.1e-10 Score=114.22 Aligned_cols=119 Identities=9% Similarity=0.023 Sum_probs=78.3
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCc
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQ 596 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~ 596 (789)
|| .+|.+.-. |+.|.||++||..+.... |... ...|+ .+|.|+++|.||.|..... . ......
T Consensus 16 ~g-~~i~y~~~--------G~g~~vvllHG~~~~~~~--~~~~-~~~L~-~~~~vi~~Dl~G~G~S~~~---~-~~~~~~ 78 (298)
T d1mj5a_ 16 KG-RRMAYIDE--------GTGDPILFQHGNPTSSYL--WRNI-MPHCA-GLGRLIACDLIGMGDSDKL---D-PSGPER 78 (298)
T ss_dssp TT-EEEEEEEE--------SCSSEEEEECCTTCCGGG--GTTT-GGGGT-TSSEEEEECCTTSTTSCCC---S-SCSTTS
T ss_pred CC-EEEEEEEE--------cCCCcEEEECCCCCCHHH--HHHH-HHHHh-cCCEEEEEeCCCCCCCCCC---c-cccccc
Confidence 88 88875432 344788999998766443 3332 34566 7899999999997753321 0 011112
Q ss_pred chHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 597 NCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 597 ~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
....+..+.+..++... ...+++.++|||+||.+++.++.++|+++.+++...+..
T Consensus 79 ~~~~~~~~~~~~~~~~~-~~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l~~~~~~~ 134 (298)
T d1mj5a_ 79 YAYAEHRDYLDALWEAL-DLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIA 134 (298)
T ss_dssp SCHHHHHHHHHHHHHHT-TCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECC
T ss_pred cccchhhhhhccccccc-cccccCeEEEecccchhHHHHHHHHHhhhheeecccccc
Confidence 23344444444433321 234689999999999999999999999999988765543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.14 E-value=4.7e-09 Score=108.37 Aligned_cols=152 Identities=9% Similarity=-0.015 Sum_probs=96.6
Q ss_pred EEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCCEEEEEECCCC
Q 003878 303 FSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDA 381 (789)
Q Consensus 303 ~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~~l~~~tn~~~ 381 (789)
....+.+++..++.... ...+.++|+.++. +...+........ ..|+|+|+.|+..+.
T Consensus 188 ~~~~~~~~~~~~~~~~~-----d~~v~i~d~~~~~-------------~~~~~~~h~~~i~~v~~~p~~~~l~s~s~--- 246 (340)
T d1tbga_ 188 MSLSLAPDTRLFVSGAC-----DASAKLWDVREGM-------------CRQTFTGHESDINAICFFPNGNAFATGSD--- 246 (340)
T ss_dssp EEEEECTTSSEEEEEET-----TTEEEEEETTTTE-------------EEEEECCCSSCEEEEEECTTSSEEEEEET---
T ss_pred eeeccccccceeEEeec-----CceEEEEECCCCc-------------EEEEEeCCCCCeEEEEECCCCCEEEEEeC---
Confidence 34566777777665432 3458888987642 1222222111122 348899998776443
Q ss_pred CCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccC
Q 003878 382 PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARRE 461 (789)
Q Consensus 382 ~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d 461 (789)
++.|..+++........+........+..+.+++++.++++...++ .|++||+.+++.+..+..+.+.|..++++++
T Consensus 247 -d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg--~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d 323 (340)
T d1tbga_ 247 -DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF--NCNVWDALKADRAGVLAGHDNRVSCLGVTDD 323 (340)
T ss_dssp -TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTS--CEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred -CCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCC--EEEEEECCCCcEEEEEcCCCCCEEEEEEeCC
Confidence 3568888987765233332333335578888988777888888887 6899999988887777766777888999999
Q ss_pred CcEEEEEEcCCCCCcEEEEEE
Q 003878 462 DSVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 462 ~~~l~~~~ss~~~P~~ly~~d 482 (789)
++.++ +.+. -+.++.||
T Consensus 324 ~~~l~-s~s~---Dg~v~iWd 340 (340)
T d1tbga_ 324 GMAVA-TGSW---DSFLKIWN 340 (340)
T ss_dssp SSCEE-EEET---TSCEEEEC
T ss_pred CCEEE-EEcc---CCEEEEeC
Confidence 88654 3322 23455553
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=2.3e-09 Score=118.06 Aligned_cols=326 Identities=10% Similarity=0.018 Sum_probs=168.6
Q ss_pred eEeCCEEEEEEEcCCCC----eeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEE
Q 003878 87 FKRGNKYFYFHNTGLQP----QSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKL 162 (789)
Q Consensus 87 ~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v 162 (789)
.++|.+++|..+..... ...+|+.+..++..+.|..+.. +...+..+.|||||++|||+.+ .+|++
T Consensus 69 SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~----~~~~l~~~~wSPDG~~iafv~~------~nl~~ 138 (465)
T d1xfda1 69 SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEV----SNAKLQYAGWGPKGQQLIFIFE------NNIYY 138 (465)
T ss_dssp CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTC----CSCCCSBCCBCSSTTCEEEEET------TEEEE
T ss_pred CCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccC----CccccceeeeccCCceEEEEec------ceEEE
Confidence 35788877766543221 1235555544454444322211 1123456889999999999864 26999
Q ss_pred EEcCCCceeccccccccc-cc--ccCccc---eeeeeecccccccccccccccc----ceeeEE----------------
Q 003878 163 MRIEDQIVEADALSWVCF-CF--SHSFGY---FFHLTISLLNVPTYKLFLYLRG----IFFFFY---------------- 216 (789)
Q Consensus 163 ~dl~tg~~~~~~~~~~~~-~~--~~~~~~---~~~~~~~~~~~p~~~~~~~~~~----~~~~~~---------------- 216 (789)
+++.++..++.+-.+..+ .+ ..+..| +......-+|+|+|+.+.++|. ..-..+
T Consensus 139 ~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Y 218 (465)
T d1xfda1 139 CAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHY 218 (465)
T ss_dssp ESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEEC
T ss_pred EecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeec
Confidence 999888654322111100 00 000000 0001123457899996666541 111111
Q ss_pred Eeeeccccceeeeeeec-------------cc-----ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEE
Q 003878 217 LFSLVKSTIYSFWSVVS-------------QF-----KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFY 278 (789)
Q Consensus 217 ~~~s~~~g~~~l~~~~~-------------~~-----~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (789)
-..++..-..+|+-+++ .. -...+.|+||++.+++.... ......++
T Consensus 219 p~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR---------------~q~~~~i~ 283 (465)
T d1xfda1 219 PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR---------------AQNVSILT 283 (465)
T ss_dssp CBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET---------------TSCEEEEE
T ss_pred cccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEcc---------------ccccceEE
Confidence 11111111123333333 00 01357899998755544332 12334577
Q ss_pred EEECCCCCCCcEEEEecCCCCee----EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEe
Q 003878 279 YHFLGTKQSEDILCWKDPEHPKY----IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK 354 (789)
Q Consensus 279 ~~~lg~~~~~~~~~~~~~~~~~~----~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 354 (789)
..+..++... .++.+.. +.+ ...+.|+|||+.++|......+....+|.+.+...... ......+.
T Consensus 284 ~~d~~tg~~~--~~~~e~~-~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~-------~~~~~~~~ 353 (465)
T d1xfda1 284 LCDATTGVCT--KKHEDES-EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPN-------SSNDNIQS 353 (465)
T ss_dssp EEETTTCCEE--EEEEEEC-SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCC-------SSSCCCCB
T ss_pred EEcCCCCcEE--EEEEEcC-CceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEecccccc-------CCCceeEE
Confidence 7787766433 3333322 122 12468999999887653322223466777765321100 00122334
Q ss_pred eecc-ccc-eeEEEecCCCEEEEEECCCCC-CceEEEEECCCCCCeEEeccC-CCCceeeeEEEecC-CEEEEEEEeCCe
Q 003878 355 LIDG-FDA-QYEVIANDDTVFTFLTNKDAP-KYKIIRVDLKEPNDWFEVIPE-AERDVLESATAVNL-NQMIVSYLSDVK 429 (789)
Q Consensus 355 l~~~-~~~-~~~~~s~dG~~l~~~tn~~~~-~~~L~~~dl~~~~~~~~l~~~-~~~~~i~~v~~~~~-~~lv~~~~~~g~ 429 (789)
++.+ +.. ....|+.+++.+||+++.+.+ ..+||+++++++...+.+... .+.....++.++++ +.++..++.-..
T Consensus 354 LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~ 433 (465)
T d1xfda1 354 ITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGV 433 (465)
T ss_dssp SCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSS
T ss_pred eccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCC
Confidence 5543 221 123478889999999987544 567999999876522333321 12223456778875 456666665556
Q ss_pred EEEEEEECCCCceeeecc
Q 003878 430 YVLQIRDLKNGSLLHQLP 447 (789)
Q Consensus 430 ~~L~~~dl~tG~~~~~l~ 447 (789)
+.+.+++..+|+.+..|+
T Consensus 434 P~~~~~~~~~~~~~~~Le 451 (465)
T d1xfda1 434 PMVTVHNTTDKKKMFDLE 451 (465)
T ss_dssp CCEEEEETTTCCEEEEEE
T ss_pred CeEEEEECCCCCEEEEEc
Confidence 677778877777655553
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.09 E-value=7.8e-09 Score=109.78 Aligned_cols=248 Identities=8% Similarity=-0.008 Sum_probs=148.0
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecc-cccccccccccCccceeeeeeccccccccccccccccce
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
|..++|||||++||++.. ...|+|||+++++.... .+... .+
T Consensus 10 It~~~~s~dg~~la~~~~-----~~~i~iw~~~~~~~~~~~~l~gH-------~~------------------------- 52 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPN-----NHEVHIYEKSGNKWVQVHELKEH-------NG------------------------- 52 (371)
T ss_dssp CCEEEECTTSSEEEEECS-----SSEEEEEEEETTEEEEEEEEECC-------SS-------------------------
T ss_pred eEEEEECCCCCEEEEEeC-----CCEEEEEECCCCCEEEEEEecCC-------CC-------------------------
Confidence 467889999999997532 34799999998854321 12211 00
Q ss_pred eeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE
Q 003878 213 FFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC 292 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~ 292 (789)
.+.+++|+||++.|+-...+ ..|++|++.+...+..+.
T Consensus 53 -----------------------~V~~l~fsp~~~~l~s~s~D-------------------~~i~vWd~~~~~~~~~~~ 90 (371)
T d1k8kc_ 53 -----------------------QVTGVDWAPDSNRIVTCGTD-------------------RNAYVWTLKGRTWKPTLV 90 (371)
T ss_dssp -----------------------CEEEEEEETTTTEEEEEETT-------------------SCEEEEEEETTEEEEEEE
T ss_pred -----------------------CEEEEEECCCCCEEEEEECC-------------------CeEEEEeecccccccccc
Confidence 25789999999988755332 348888886554333333
Q ss_pred EecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc-ccee-EEEecCC
Q 003878 293 WKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF-DAQY-EVIANDD 370 (789)
Q Consensus 293 ~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~-~~~~-~~~s~dG 370 (789)
+.. +...+..+.|+|||++++..+.++ .-.+|.++..... .......... .... ..|+|+|
T Consensus 91 ~~~--~~~~v~~i~~~p~~~~l~~~s~d~---~i~i~~~~~~~~~------------~~~~~~~~~~~~~v~~v~~~p~~ 153 (371)
T d1k8kc_ 91 ILR--INRAARCVRWAPNEKKFAVGSGSR---VISICYFEQENDW------------WVCKHIKKPIRSTVLSLDWHPNS 153 (371)
T ss_dssp CCC--CSSCEEEEEECTTSSEEEEEETTS---SEEEEEEETTTTE------------EEEEEECTTCCSCEEEEEECTTS
T ss_pred ccc--ccccccccccccccccceeecccC---cceeeeeeccccc------------ccccccccccccccccccccccc
Confidence 332 233356789999999998776432 3445555433210 0011111111 1112 3489999
Q ss_pred CEEEEEECCCCCCceEEEEECCCCC--------C-------eEEe-ccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEE
Q 003878 371 TVFTFLTNKDAPKYKIIRVDLKEPN--------D-------WFEV-IPEAERDVLESATAVNLNQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 371 ~~l~~~tn~~~~~~~L~~~dl~~~~--------~-------~~~l-~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~ 434 (789)
+.|+..+. ++.|..+++.... . ...+ ........+..+++++++..+++...++ .|.+
T Consensus 154 ~~l~s~s~----D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~--~i~i 227 (371)
T d1k8kc_ 154 VLLAAGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS--TVCL 227 (371)
T ss_dssp SEEEEEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT--EEEE
T ss_pred cceecccc----CcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCC--cceE
Confidence 98765443 3456666654321 0 0011 1112224567888888666777777776 6999
Q ss_pred EECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 435 RDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 435 ~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
||+.+++.+..+......+..+.+++|+..++ + +...-..++.++...+
T Consensus 228 wd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la-~--g~d~~~~~~~~~~~~~ 276 (371)
T d1k8kc_ 228 ADADKKMAVATLASETLPLLAVTFITESSLVA-A--GHDCFPVLFTYDSAAG 276 (371)
T ss_dssp EEGGGTTEEEEEECSSCCEEEEEEEETTEEEE-E--ETTSSCEEEEEETTTT
T ss_pred EeeecccceeeeecccccceeeeecCCCCEEE-E--EcCCceEEEEeeCCCc
Confidence 99987877666665555677888899886544 2 2234456777776655
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.06 E-value=1.1e-07 Score=102.81 Aligned_cols=288 Identities=11% Similarity=0.020 Sum_probs=153.4
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec-ccccccccccccCccceeeeeeccccccccccccccccce
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIF 212 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 212 (789)
+.++++||||++|+.+ +..| +|++||+.|++... ..+.-. ..-.++..|+.+.|+|+
T Consensus 64 ~~~vafSPDGk~l~~~-~~d~----~v~vwd~~t~~~~~~~~i~~~--------~~~~~~~~s~~~spDG~--------- 121 (426)
T d1hzua2 64 VHISRMSASGRYLLVI-GRDA----RIDMIDLWAKEPTKVAEIKIG--------IEARSVESSKFKGYEDR--------- 121 (426)
T ss_dssp EEEEEECTTSCEEEEE-ETTS----EEEEEETTSSSCEEEEEEECC--------SEEEEEEECCSTTCTTT---------
T ss_pred eeEEEECCCCCEEEEE-eCCC----CEEEEEccCCceeEEEEEeCC--------CCCcceEEeeeecCCCC---------
Confidence 6789999999998643 3333 79999999996332 111110 00134667888889996
Q ss_pred eeEEEeeeccccceeeeeeec----------c-----------cccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccC
Q 003878 213 FFFYLFSLVKSTIYSFWSVVS----------Q-----------FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDS 271 (789)
Q Consensus 213 ~~~~~~~s~~~g~~~l~~~~~----------~-----------~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~ 271 (789)
+++..+..+++..+|.... . -....++.++|++.+++....
T Consensus 122 --~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~---------------- 183 (426)
T d1hzua2 122 --YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE---------------- 183 (426)
T ss_dssp --EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT----------------
T ss_pred --EEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC----------------
Confidence 3444444566666665332 0 001224455555555544221
Q ss_pred CcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCc
Q 003878 272 NLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLP 351 (789)
Q Consensus 272 ~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 351 (789)
...+............+..... .....++.++|+|++++..... .+.+.+++..++.
T Consensus 184 --~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~a~~~----~~~~~~~~~~~~~-------------- 240 (426)
T d1hzua2 184 --TGKVLLVNYKDIDNLTVTSIGA---APFLADGGWDSSHRYFMTAANN----SNKVAVIDSKDRR-------------- 240 (426)
T ss_dssp --TTEEEEEECSSSSSCEEEEEEC---CSSEEEEEECTTSCEEEEEETT----CSEEEEEETTTTE--------------
T ss_pred --CCeEEEEEeccccceeeEEecc---CCccEeeeECCCCcEEEeeeec----ccceeeeeccccc--------------
Confidence 1234444443322211111121 2234578999999999876533 3557778877642
Q ss_pred cEeeec-c--cc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC-------CeEEeccCCCCceeeeEEEecCCEE
Q 003878 352 FVKLID-G--FD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-------DWFEVIPEAERDVLESATAVNLNQM 420 (789)
Q Consensus 352 ~~~l~~-~--~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~-------~~~~l~~~~~~~~i~~v~~~~~~~l 420 (789)
...... + .. .....+..++...++.... .++..+..++..... ....+..+. ..+..+++++++..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~--~~v~~v~~sPdg~~ 317 (426)
T d1hzua2 241 LSALVDVGKTPHPGRGANFVHPKYGPVWSTSH-LGDGSISLIGTDPKNHPQYAWKKVAELQGQG--GGSLFIKTHPKSSH 317 (426)
T ss_dssp EEEEEECSSCCCCSCCEEEEETTTEEEEEEEC-TTTCEEEEEECCTTTCTTTBTSEEEEEECSS--SCCCCEECCTTCSE
T ss_pred EEEEeccCCcccccceeeeecCCCCceEEecc-CCCceEEEeeccccccccccceEeEEEecCC--CceeEEEcCCCCce
Confidence 111111 0 00 0111122233332222222 234556666554321 122333333 34567888886544
Q ss_pred EEEEEe---CC--eEEEEEEECCCCceeeecc---------cCCeeEEEeecccCCcEEEEEEc-CCCCCcEEEEEECCC
Q 003878 421 IVSYLS---DV--KYVLQIRDLKNGSLLHQLP---------IEIGSVNAISARREDSVVFISFT-SFLIPGIVYQCNLKT 485 (789)
Q Consensus 421 v~~~~~---~g--~~~L~~~dl~tG~~~~~l~---------~~~~~v~~~s~s~d~~~l~~~~s-s~~~P~~ly~~dl~t 485 (789)
++.... ++ ...|.+||+++++...++. .....+..+.+||||+.++++.. +-...+.|.++|.+|
T Consensus 318 l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T 397 (426)
T d1hzua2 318 LYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT 397 (426)
T ss_dssp EEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTT
T ss_pred EEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCC
Confidence 442111 11 1269999999887543331 12334557889999999988763 345678899999998
Q ss_pred CC
Q 003878 486 ET 487 (789)
Q Consensus 486 g~ 487 (789)
++
T Consensus 398 ~k 399 (426)
T d1hzua2 398 LK 399 (426)
T ss_dssp TE
T ss_pred Ce
Confidence 85
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.01 E-value=3e-07 Score=96.59 Aligned_cols=310 Identities=11% Similarity=-0.048 Sum_probs=152.3
Q ss_pred CCCCceEeCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecC-----Cce
Q 003878 82 RYDAPFKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYS-----GSD 156 (789)
Q Consensus 82 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~-----g~~ 156 (789)
...+|.++|.+.|..-.........+|+.+...++..--++.. . ...+.+||||++|+++.... +..
T Consensus 24 ~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~------~--~~~~a~SpDG~~l~va~~~~~~~~~~~~ 95 (373)
T d2madh_ 24 NDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG------F--LPNPVAAHSGSEFALASTSFSRIAKGKR 95 (373)
T ss_pred cccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCC------C--CccEEEcCCCCEEEEEeecCCccccccc
Confidence 4566788998886643322222345888775555422222221 1 12578999999999876533 244
Q ss_pred EEEEEEEEcCCCceecccccccccccccCccceeeee---eccccccccccccccccceeeEE-Eeeeccccceeeeeee
Q 003878 157 WATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLT---ISLLNVPTYKLFLYLRGIFFFFY-LFSLVKSTIYSFWSVV 232 (789)
Q Consensus 157 ~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~p~~~~~~~~~~~~~~~~-~~~s~~~g~~~l~~~~ 232 (789)
...|++||+.+++.+...-..... -.++. ......|+++ .+ .+.-+.++...+|...
T Consensus 96 ~~~v~v~D~~t~~~~~~~~~~~~~--------~~~~~~~~~~~~~s~dg~-----------~~~v~~~~~~~~~~~~~~~ 156 (373)
T d2madh_ 96 TDYVEVFDPVTFLPIADIELPDAP--------RFDVGPYSWMNANTPNNA-----------DLLFFQFAAGPAVGLVVQG 156 (373)
T ss_pred ceEEEEEECCCCcEEEEEecCCcc--------eeEeccCCCcEEEEeCCC-----------cEEEEEEcCCCceEEeecc
Confidence 568999999999765421000000 00000 0112234443 11 1122333344444433
Q ss_pred c------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEE--ecCCCCeeEEE
Q 003878 233 S------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCW--KDPEHPKYIFS 304 (789)
Q Consensus 233 ~------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~--~~~~~~~~~~~ 304 (789)
. .-....+.++|||+.++++... ...+.+++..+......... ...........
T Consensus 157 ~~~~~~~~~~~~~~~~s~~g~~~~v~~~~------------------dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (373)
T d2madh_ 157 GSSDDQLLSSPTCYHIHPGAPSTFYLLCA------------------QGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQP 218 (373)
T ss_pred CCeEEEEeccceeEEEecCCCcEEEEEcC------------------CCeEEEEEcCCceeeEEEeeeccccCccceeee
Confidence 2 1112467889999888776432 22355666554332211111 11111122233
Q ss_pred EEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeee-ccccceeEEEecCCCEEEEEECCC---
Q 003878 305 GHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLI-DGFDAQYEVIANDDTVFTFLTNKD--- 380 (789)
Q Consensus 305 ~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~s~dG~~l~~~tn~~--- 380 (789)
..+++++..++... ...+++++..+..-........ ......... .........+++++..+++....+
T Consensus 219 ~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 291 (373)
T d2madh_ 219 AQANKSGRIVWPVY------SGKILQADISAAGATNKAPIDA-LSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW 291 (373)
T ss_pred EEECCCceEEEecC------CceEEEEEcCCCeEEEEEeecc-ccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceE
Confidence 45566665554321 2335555554421000000000 000000000 001112234788888877655432
Q ss_pred ---CCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCE-E-EEEEEeCCeEEEEEEECCCCceeeeccc
Q 003878 381 ---APKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQ-M-IVSYLSDVKYVLQIRDLKNGSLLHQLPI 448 (789)
Q Consensus 381 ---~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~-l-v~~~~~~g~~~L~~~dl~tG~~~~~l~~ 448 (789)
.....+..+|+.+++.... ++.. .....+.+++|++ + ++....+ ..|++||+.+|+.++.+..
T Consensus 292 ~~~~~~~~v~~~d~~t~~~~~~-~~~~--~~~~~~a~spDG~~~l~vt~~~d--~~v~v~D~~tg~~~~~~~~ 359 (373)
T d2madh_ 292 KLHAAAKEVTSVTGLVGQTSSQ-ISLG--HDVDAISVAQDGGPDLYALSAGT--EVLHIYDAGAGDQDQSTVE 359 (373)
T ss_pred EeecCCCeEEEEECCCCcEEEE-ecCC--CCeeEEEECCCCCEEEEEEeCCC--CeEEEEECCCCCEEEEECC
Confidence 2345788889888763333 3332 3456788888643 3 4444444 3799999999998777764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.99 E-value=2.4e-09 Score=111.11 Aligned_cols=71 Identities=10% Similarity=0.036 Sum_probs=46.8
Q ss_pred eeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 409 LESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 409 i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+.....++++..++....+ .+.+||+.+++.++.+..+. .+..+++++|++.++... .-+.+..||..+++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~---~v~v~d~~~~~~~~~~~~~~-~~~~va~s~DG~~l~v~~----~d~~v~v~D~~t~~ 324 (346)
T d1jmxb_ 254 YFTGLRSPKDPNQIYGVLN---RLAKYDLKQRKLIKAANLDH-TYYCVAFDKKGDKLYLGG----TFNDLAVFNPDTLE 324 (346)
T ss_dssp EEEEEECSSCTTEEEEEES---EEEEEETTTTEEEEEEECSS-CCCEEEECSSSSCEEEES----BSSEEEEEETTTTE
T ss_pred eEEEEEeCCCCEEEEecCC---eEEEEECCCCcEEEEEcCCC-CEEEEEEcCCCCEEEEEe----CCCcEEEEECccCC
Confidence 3344455433333333332 68999999888766665442 345678999999887642 23689999999885
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.96 E-value=9.4e-08 Score=100.85 Aligned_cols=200 Identities=14% Similarity=0.023 Sum_probs=115.9
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...++|+|||+.|+....+ ..|++++..+.. ...... .+...+..+.+++++..++.
T Consensus 124 V~~l~~s~~~~~l~s~~~d-------------------g~v~i~~~~~~~--~~~~~~--~h~~~v~~~~~~~~~~~~~~ 180 (388)
T d1erja_ 124 IRSVCFSPDGKFLATGAED-------------------RLIRIWDIENRK--IVMILQ--GHEQDIYSLDYFPSGDKLVS 180 (388)
T ss_dssp EEEEEECTTSSEEEEEETT-------------------SCEEEEETTTTE--EEEEEC--CCSSCEEEEEECTTSSEEEE
T ss_pred EEEEEECCCCCcceecccc-------------------cccccccccccc--cccccc--cccccccccccccccccccc
Confidence 4678999999998865433 247778776542 222222 23344667899999999887
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEe-cCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIA-NDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s-~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
... ...+.++|..+.. ...............+. +++..|+..+. ++.|..+++.++.
T Consensus 181 ~~~-----~~~i~~~d~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~i~~~~~~~ 238 (388)
T d1erja_ 181 GSG-----DRTVRIWDLRTGQ-------------CSLTLSIEDGVTTVAVSPGDGKYIAAGSL----DRAVRVWDSETGF 238 (388)
T ss_dssp EET-----TSEEEEEETTTTE-------------EEEEEECSSCEEEEEECSTTCCEEEEEET----TSCEEEEETTTCC
T ss_pred ccc-----ceeeeeeeccccc-------------cccccccccccccccccCCCCCeEEEEcC----CCeEEEeecccCc
Confidence 653 3458888887631 11111111111112233 46776664432 3568888988765
Q ss_pred CeEEeccCC-----CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecc------------cCCeeEEEeec
Q 003878 396 DWFEVIPEA-----ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP------------IEIGSVNAISA 458 (789)
Q Consensus 396 ~~~~l~~~~-----~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~------------~~~~~v~~~s~ 458 (789)
....+.... ....+..+.+++++.++++...++ .|.+||+.+++...... .....+..+++
T Consensus 239 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 316 (388)
T d1erja_ 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR--SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT 316 (388)
T ss_dssp EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS--EEEEEEC---------------CEEEEEECCSSCEEEEEE
T ss_pred cceeeccccccccCCCCCEEEEEECCCCCEEEEEECCC--cEEEEeccCCccccccccccccceeeecccccceEEEEEE
Confidence 222222211 124577889988667777787777 68888887554321111 11344667788
Q ss_pred ccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 459 RREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 459 s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+++++.++... .-+.++.||+.+++
T Consensus 317 s~~~~~l~sg~----~dg~i~vwd~~~~~ 341 (388)
T d1erja_ 317 TQNDEYILSGS----KDRGVLFWDKKSGN 341 (388)
T ss_dssp CGGGCEEEEEE----TTSEEEEEETTTCC
T ss_pred CCCCCEEEEEe----CCCEEEEEECCCCc
Confidence 89888665432 23689999999886
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.94 E-value=7.9e-08 Score=104.03 Aligned_cols=333 Identities=12% Similarity=0.013 Sum_probs=173.9
Q ss_pred ceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecc
Q 003878 117 AKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISL 196 (789)
Q Consensus 117 ~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (789)
++++++++.+.. .+.+++|.+.+.++.... ..+|+|||++|++.+. .+..- .-..+.
T Consensus 11 ~~~~~~~~~~p~-------~~~~~~d~~~~~~V~~~~---dg~v~vwD~~t~~~~~-~l~~g------------~~~~~v 67 (426)
T d1hzua2 11 WKVLVKPEDRPK-------KQLNDLDLPNLFSVTLRD---AGQIALVDGDSKKIVK-VIDTG------------YAVHIS 67 (426)
T ss_dssp CEESSCGGGSCS-------SCCSCCCGGGEEEEEETT---TTEEEEEETTTCSEEE-EEECC------------SSEEEE
T ss_pred heeeCCcccCCC-------cccccCCCCeEEEEEEcC---CCEEEEEECCCCcEEE-EEeCC------------CCeeEE
Confidence 567766665432 244778877666554322 3489999999998764 22211 002345
Q ss_pred ccccccccccccccceeeEEEeeeccccceeeeeeec-------cc----cc----ceEEEEeCCcEEEEEEccCCCCCC
Q 003878 197 LNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVS-------QF----KF----SSIAWTHDSKGFFYSRYPAPKEGK 261 (789)
Q Consensus 197 ~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~-------~~----~~----~~~~wspDg~~i~y~~~~~~~~~~ 261 (789)
...|+|+ .+|+++++|+-.+|.+.- .. .. .+++|||||++++.....
T Consensus 68 afSPDGk------------~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~------ 129 (426)
T d1hzua2 68 RMSASGR------------YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYW------ 129 (426)
T ss_dssp EECTTSC------------EEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEE------
T ss_pred EECCCCC------------EEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecC------
Confidence 5668984 778888999999997643 01 11 255677899999876432
Q ss_pred CCCCCccccCCcccEEEEEECCCCCCCcEEEEecCC---------CCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEE
Q 003878 262 DMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE---------HPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCD 332 (789)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~---------~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d 332 (789)
+..+.+++..+..... +..... .......+..|+|++.+++.... ...+.+++
T Consensus 130 ------------~~~v~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~----~~~i~~~~ 191 (426)
T d1hzua2 130 ------------PPQFAIMDGETLEPKQ--IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE----TGKVLLVN 191 (426)
T ss_dssp ------------SSEEEEEETTTCCEEE--EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT----TTEEEEEE
T ss_pred ------------CCeEEEEcCCccceeE--EeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC----CCeEEEEE
Confidence 2346666665543211 111100 01112356778899888776532 34566676
Q ss_pred CCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCC-ceeee
Q 003878 333 LSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAER-DVLES 411 (789)
Q Consensus 333 ~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~-~~i~~ 411 (789)
..+.. .........+.......++|+|+++++.... ...+..+++.+++ .....+.... .....
T Consensus 192 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 256 (426)
T d1hzua2 192 YKDID-----------NLTVTSIGAAPFLADGGWDSSHRYFMTAANN---SNKVAVIDSKDRR-LSALVDVGKTPHPGRG 256 (426)
T ss_dssp CSSSS-----------SCEEEEEECCSSEEEEEECTTSCEEEEEETT---CSEEEEEETTTTE-EEEEEECSSCCCCSCC
T ss_pred ecccc-----------ceeeEEeccCCccEeeeECCCCcEEEeeeec---ccceeeeeccccc-EEEEeccCCcccccce
Confidence 65531 1111111112111224488999988765543 3567778887765 2222222111 11111
Q ss_pred EE-EecCCEEEEEEEeCCeEEEEEEECCCC-------ceeeecccCCeeEEEeecccCCcEEEEEEcCC---CCCcEEEE
Q 003878 412 AT-AVNLNQMIVSYLSDVKYVLQIRDLKNG-------SLLHQLPIEIGSVNAISARREDSVVFISFTSF---LIPGIVYQ 480 (789)
Q Consensus 412 v~-~~~~~~lv~~~~~~g~~~L~~~dl~tG-------~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~---~~P~~ly~ 480 (789)
.. ..++...+......+...+..++.... +....+..+...+..+.++||++.+++...-. ..-.++.+
T Consensus 257 ~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~v 336 (426)
T d1hzua2 257 ANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAV 336 (426)
T ss_dssp EEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEE
T ss_pred eeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEE
Confidence 11 222234444444444445666665432 33333443334455678999999888643211 11247999
Q ss_pred EECCCCCceEEEeeeccCCCCCCCCCcEEEEEEecCCCceEEEEE
Q 003878 481 CNLKTETPEMKIFRETIIPGFDRSEFHVHQVFVPSKDGSTKIPMF 525 (789)
Q Consensus 481 ~dl~tg~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~dg~~~i~~~ 525 (789)
+|+++++...+++............-.+-.+.| |+|| .+|-+.
T Consensus 337 wd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~f-SpDG-k~i~vs 379 (426)
T d1hzua2 337 FDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY-NKRG-DEVWFS 379 (426)
T ss_dssp EETTCTTSCCEEECHHHHHCCCSSCCCEEEEEE-CSSS-SEEEEE
T ss_pred EECCCCCcCeEEeccchhcccCCCCccEEEEEE-CCCC-CEEEEE
Confidence 999988633333321111111111122233334 6788 776443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.93 E-value=8.2e-08 Score=101.52 Aligned_cols=74 Identities=5% Similarity=-0.009 Sum_probs=50.4
Q ss_pred eEEEecC-CEEEEEEEeCC------eEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEEC
Q 003878 411 SATAVNL-NQMIVSYLSDV------KYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 411 ~v~~~~~-~~lv~~~~~~g------~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl 483 (789)
.++++++ +.+++....+. ..+|+++|.++++.+..+..+ ..+..+.+++|++.++|...+ .-.+++.||.
T Consensus 268 ~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~~a~spDG~~~ly~s~~--~~~~v~v~D~ 344 (368)
T d1mdah_ 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSA--GTEVLDIYDA 344 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-EEECEEEECCSSSCEEEEEET--TTTEEEEEES
T ss_pred eEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCC-CceeEEEECCCCCEEEEEEeC--CCCeEEEEEC
Confidence 3556654 55666555443 358999999999876666543 445678899999865544443 2368999999
Q ss_pred CCCC
Q 003878 484 KTET 487 (789)
Q Consensus 484 ~tg~ 487 (789)
.+++
T Consensus 345 ~tgk 348 (368)
T d1mdah_ 345 ASDQ 348 (368)
T ss_dssp SSCE
T ss_pred CCCC
Confidence 9995
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.89 E-value=1.4e-06 Score=94.17 Aligned_cols=155 Identities=10% Similarity=0.067 Sum_probs=94.2
Q ss_pred EEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec-ccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 133 ALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 133 ~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
.+.++++||||++|+.+ +..| .+++||+.|++... ..+.-. ..-.++..++.+.|||+
T Consensus 63 ~~~~v~fSpDG~~l~~~-s~dg----~v~~~d~~t~~~~~~~~i~~~--------~~~~~~~~s~~~SpDG~-------- 121 (432)
T d1qksa2 63 AVHISRLSASGRYLFVI-GRDG----KVNMIDLWMKEPTTVAEIKIG--------SEARSIETSKMEGWEDK-------- 121 (432)
T ss_dssp CEEEEEECTTSCEEEEE-ETTS----EEEEEETTSSSCCEEEEEECC--------SEEEEEEECCSTTCTTT--------
T ss_pred CeeEEEECCCCCEEEEE-cCCC----CEEEEEeeCCCceEEEEEecC--------CCCCCeEEecccCCCCC--------
Confidence 36788999999999754 4333 79999999885321 111110 01235677888899996
Q ss_pred eeeEEEeeeccccceeeeeeec---------------------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCcccc
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVS---------------------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETD 270 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~---------------------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~ 270 (789)
+++..+..+++..||.... .-+...+.+||||+.++++..+
T Consensus 122 ---~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~--------------- 183 (432)
T d1qksa2 122 ---YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE--------------- 183 (432)
T ss_dssp ---EEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT---------------
T ss_pred ---EEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc---------------
Confidence 3334455677778886533 0011235778888887776432
Q ss_pred CCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCC
Q 003878 271 SNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 336 (789)
Q Consensus 271 ~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g 336 (789)
..++..++..+.... .+...+. ......+.+||||++++..... .+.+.+++.+++
T Consensus 184 ---~~~i~~~d~~~~~~~--~~~~i~~-g~~~~~~~~spdg~~~~va~~~----~~~v~v~d~~~~ 239 (432)
T d1qksa2 184 ---TGKILLVDYTDLNNL--KTTEISA-ERFLHDGGLDGSHRYFITAANA----RNKLVVIDTKEG 239 (432)
T ss_dssp ---TTEEEEEETTCSSEE--EEEEEEC-CSSEEEEEECTTSCEEEEEEGG----GTEEEEEETTTT
T ss_pred ---CCeEEEEEccCCCcc--eEEEEcc-cCccccceECCCCCEEEEeccc----cceEEEeecccc
Confidence 235777776543221 1222111 1224578999999999887643 356777887763
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.88 E-value=4e-08 Score=102.21 Aligned_cols=168 Identities=11% Similarity=0.054 Sum_probs=97.2
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...++|+|||+.|+...... ...+.++...++. .+.....+...+..+.|+|++.++++
T Consensus 118 v~~v~~s~~~~~l~~~~~~~-----------------~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~ 176 (325)
T d1pgua1 118 ISDISWDFEGRRLCVVGEGR-----------------DNFGVFISWDSGN----SLGEVSGHSQRINACHLKQSRPMRSM 176 (325)
T ss_dssp EEEEEECTTSSEEEEEECCS-----------------SCSEEEEETTTCC----EEEECCSCSSCEEEEEECSSSSCEEE
T ss_pred EEEEEECCCCCccceeeccc-----------------cceEEEEeecccc----cceeeeecccccccccccccccceEE
Confidence 46899999999998875321 1225555555432 22222233445678899999998777
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec---ccccee-EEEecCCCEEEEEECCCCCCceEEEEECC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID---GFDAQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLK 392 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~---~~~~~~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~ 392 (789)
.... ...+.++++...+. ...... ...... ..|+||+..+++.... ++.|..+|+.
T Consensus 177 ~~~~----d~~v~~~d~~~~~~-------------~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~---d~~i~iwd~~ 236 (325)
T d1pgua1 177 TVGD----DGSVVFYQGPPFKF-------------SASDRTHHKQGSFVRDVEFSPDSGEFVITVGS---DRKISCFDGK 236 (325)
T ss_dssp EEET----TTEEEEEETTTBEE-------------EEEECSSSCTTCCEEEEEECSTTCCEEEEEET---TCCEEEEETT
T ss_pred Eeec----cccccccccccccc-------------ceecccccCCCCccEEeeeccccceecccccc---ccceeeeeec
Confidence 6643 24477788765310 011111 111112 2488976555544433 3568889998
Q ss_pred CCCCeEEeccCCCC--ceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc
Q 003878 393 EPNDWFEVIPEAER--DVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI 448 (789)
Q Consensus 393 ~~~~~~~l~~~~~~--~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~ 448 (789)
+++....+-.+... ..+.++.+.+ +..+++...|+ .|++||+.+++.++.+..
T Consensus 237 ~~~~~~~l~~~~~~v~~~~~s~~~~d-g~~l~s~s~D~--~i~iwd~~~~~~~~~~~~ 291 (325)
T d1pgua1 237 SGEFLKYIEDDQEPVQGGIFALSWLD-SQKFATVGADA--TIRVWDVTTSKCVQKWTL 291 (325)
T ss_dssp TCCEEEECCBTTBCCCSCEEEEEESS-SSEEEEEETTS--EEEEEETTTTEEEEEEEC
T ss_pred cccccccccccccccccceeeeeccC-CCEEEEEeCCC--eEEEEECCCCCEEEEEEe
Confidence 87633444333321 1223344443 56777778887 688999998887665544
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=98.84 E-value=1.6e-06 Score=87.29 Aligned_cols=202 Identities=9% Similarity=0.022 Sum_probs=123.0
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+++|||||++||++.. ...+|.++++.+... +..+.... ....+.+++||+++++
T Consensus 34 p~~va~spdG~~l~v~~~------------------~~~~i~v~d~~t~~~--~~~~~~~~---~~~~~~~~~~~~~~~~ 90 (301)
T d1l0qa2 34 PMGAVISPDGTKVYVANA------------------HSNDVSIIDTATNNV--IATVPAGS---SPQGVAVSPDGKQVYV 90 (301)
T ss_dssp EEEEEECTTSSEEEEEEG------------------GGTEEEEEETTTTEE--EEEEECSS---SEEEEEECTTSSEEEE
T ss_pred ceEEEEeCCCCEEEEEEC------------------CCCEEEEEECCCCce--eeeeeccc---cccccccccccccccc
Confidence 367899999999987632 334699999976532 22233322 2357889999999987
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND 396 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~ 396 (789)
.... ...+.+++..++. ....+..........+++||+.+++.... ...+..++..+..
T Consensus 91 ~~~~----~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~dg~~~~~~~~~---~~~~~~~~~~~~~- 149 (301)
T d1l0qa2 91 TNMA----SSTLSVIDTTSNT-------------VAGTVKTGKSPLGLALSPDGKKLYVTNNG---DKTVSVINTVTKA- 149 (301)
T ss_dssp EETT----TTEEEEEETTTTE-------------EEEEEECSSSEEEEEECTTSSEEEEEETT---TTEEEEEETTTTE-
T ss_pred cccc----cceeeecccccce-------------eeeeccccccceEEEeecCCCeeeeeecc---ccceeeeeccccc-
Confidence 6533 3457788887642 11222222222334589999998877654 3567788887765
Q ss_pred eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCc
Q 003878 397 WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPG 476 (789)
Q Consensus 397 ~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~ 476 (789)
....++.. .....+.+++++..++....+. ..+.+++....+....+..+ .....+.++++++.+++.... ....
T Consensus 150 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~-~~~~ 224 (301)
T d1l0qa2 150 VINTVSVG--RSPKGIAVTPDGTKVYVANFDS-MSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVD-KYFN 224 (301)
T ss_dssp EEEEEECC--SSEEEEEECTTSSEEEEEETTT-TEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEEC-SSCC
T ss_pred eeeecccC--CCceEEEeeccccceeeecccc-cccccccccceeeeeccccc-CCcceeecccccccccccccc-ceee
Confidence 22233332 2345677777544444444332 35666776645443333333 334466788899988765433 3457
Q ss_pred EEEEEECCCCC
Q 003878 477 IVYQCNLKTET 487 (789)
Q Consensus 477 ~ly~~dl~tg~ 487 (789)
+++.+|+.+++
T Consensus 225 ~v~v~D~~t~~ 235 (301)
T d1l0qa2 225 TVSMIDTGTNK 235 (301)
T ss_dssp EEEEEETTTTE
T ss_pred eeeeeecCCCe
Confidence 89999998884
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=98.82 E-value=5.2e-08 Score=104.59 Aligned_cols=119 Identities=14% Similarity=0.010 Sum_probs=83.8
Q ss_pred CCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCC------eEEEEEeecCCCCCChhHHhcc
Q 003878 517 DGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLG------AVFCIANIRGGGEYGEEWHKGG 590 (789)
Q Consensus 517 dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G------~~v~~~~~RG~g~~g~~~~~~~ 590 (789)
|| .+|+..-+... .+..|.||++||-+++... |... ...|++.| |.|+++|.||.|....
T Consensus 90 ~G-~~iHf~h~~~~----~~~~~pLlLlHG~P~s~~~--w~~v-i~~La~~g~~~~~~f~VIaPDLpG~G~S~~------ 155 (394)
T d1qo7a_ 90 EG-LTIHFAALFSE----REDAVPIALLHGWPGSFVE--FYPI-LQLFREEYTPETLPFHLVVPSLPGYTFSSG------ 155 (394)
T ss_dssp TT-EEEEEEEECCS----CTTCEEEEEECCSSCCGGG--GHHH-HHHHHHHCCTTTCCEEEEEECCTTSTTSCC------
T ss_pred CC-EEEEEEEEecc----CCCCCEEEEeccccccHHH--HHHH-HHhhccccCCcccceeeecccccccCCCCC------
Confidence 89 99988655433 2456789999998877544 3333 44555577 9999999999775321
Q ss_pred cccCCcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 591 ALAKKQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 591 ~~~~~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
........+.++.+.+..|++.- ..++..+.|+|.||.++..++..+|+...+++....
T Consensus 156 P~~~~~y~~~~~a~~~~~l~~~l--g~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~ 214 (394)
T d1qo7a_ 156 PPLDKDFGLMDNARVVDQLMKDL--GFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLC 214 (394)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHHT--TCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCccCHHHHHHHHHHHHhhc--cCcceEEEEecCchhHHHHHHHHhhccccceeEeee
Confidence 11222345666767676666652 235789999999999999999999998888776543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.82 E-value=7.8e-08 Score=98.85 Aligned_cols=272 Identities=13% Similarity=0.014 Sum_probs=138.4
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeecccccccccccccccccee
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFF 213 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 213 (789)
..++.+||||++|+.+-...| .|++||++|++.+.. +....+ . ..++
T Consensus 36 ~~~i~~spDg~~l~v~~~~~~----~v~v~D~~t~~~~~~-~~~~~~-----------------~-~~~~---------- 82 (337)
T d1pbyb_ 36 PMVPMVAPGGRIAYATVNKSE----SLVKIDLVTGETLGR-IDLSTP-----------------E-ERVK---------- 82 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTT----EEEEEETTTCCEEEE-EECCBT-----------------T-EEEE----------
T ss_pred ccEEEECCCCCEEEEEECCCC----eEEEEECCCCcEEEE-EecCCC-----------------c-cccc----------
Confidence 457889999999865433333 799999999976531 111000 0 0000
Q ss_pred eEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEE
Q 003878 214 FFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCW 293 (789)
Q Consensus 214 ~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~ 293 (789)
....++|+|||+.++......... ..........+..++..+... ....
T Consensus 83 ----------------------~~~~v~~s~dg~~l~~~~~~~~~~-------~~~~~~~~~~~~~~d~~~~~~--~~~~ 131 (337)
T d1pbyb_ 83 ----------------------SLFGAALSPDGKTLAIYESPVRLE-------LTHFEVQPTRVALYDAETLSR--RKAF 131 (337)
T ss_dssp ----------------------CTTCEEECTTSSEEEEEEEEEEEC-------SSCEEECCCEEEEEETTTTEE--EEEE
T ss_pred ----------------------ceeeEEEcCCCcEEEEeecCCcce-------eeeccccccceeeccccCCeE--EEec
Confidence 236899999999998875432100 000011234566677665432 2222
Q ss_pred ecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEE
Q 003878 294 KDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVF 373 (789)
Q Consensus 294 ~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l 373 (789)
..... ...+.+||||++++... .++.++|..++.... .+..............+ ...+. ....+...
T Consensus 132 ~~~~~---~~~~~~s~dg~~l~~~~-------~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~ 198 (337)
T d1pbyb_ 132 EAPRQ---ITMLAWARDGSKLYGLG-------RDLHVMDPEAGTLVE-DKPIQSWEAETYAQPDV-LAVWN-QHESSGVM 198 (337)
T ss_dssp ECCSS---CCCEEECTTSSCEEEES-------SSEEEEETTTTEEEE-EECSTTTTTTTBCCCBC-CCCCC-CCTTTTEE
T ss_pred cccCC---ceEEEEcCCCCEEEEEc-------CCcceeeeecCcEEE-EeecCCccccceecCCc-ceeec-ccccccee
Confidence 32222 23578999999998642 224566766532000 00000000000000000 00000 00111111
Q ss_pred E---EEECC-------CCCCceEEEEECCCCCC-eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce
Q 003878 374 T---FLTNK-------DAPKYKIIRVDLKEPND-WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 374 ~---~~tn~-------~~~~~~L~~~dl~~~~~-~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
. ..... ......+..+++..+.. .....+.. .....+.+.+++..++.. . ..|.+||+++++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~---~~i~v~d~~~~~~ 272 (337)
T d1pbyb_ 199 ATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD--VFYFSTAVNPAKTRAFGA-Y---NVLESFDLEKNAS 272 (337)
T ss_dssp EEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECS--SCEEEEEECTTSSEEEEE-E---SEEEEEETTTTEE
T ss_pred eeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCC--cceEEEEecccceEEEEc-c---ccEEEEECCCCcE
Confidence 1 11110 11234577778776651 11222222 334455566644444333 2 3699999998887
Q ss_pred eeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCCceEEEee
Q 003878 443 LHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTETPEMKIFR 494 (789)
Q Consensus 443 ~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~~~~~~l~ 494 (789)
+..+..+. .+..+.+++|++.+++.. .-+++..||.++++ ....++
T Consensus 273 ~~~~~~~~-~~~~~~~s~dG~~l~v~~----~~~~i~v~D~~t~~-~v~~i~ 318 (337)
T d1pbyb_ 273 IKRVPLPH-SYYSVNVSTDGSTVWLGG----ALGDLAAYDAETLE-KKGQVD 318 (337)
T ss_dssp EEEEECSS-CCCEEEECTTSCEEEEES----BSSEEEEEETTTCC-EEEEEE
T ss_pred EEEEcCCC-CEEEEEECCCCCEEEEEe----CCCcEEEEECCCCc-EEEEEE
Confidence 66665543 344678999999887652 34689999999986 344444
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.81 E-value=2.3e-07 Score=95.33 Aligned_cols=223 Identities=9% Similarity=-0.011 Sum_probs=105.5
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
...++|+|||+.|++..... ..+..+.............. .+.....++.+||||++++.
T Consensus 85 p~~l~~spDg~~l~v~~~~~------------------~~v~~~~~~~~~~~~~~~~~--~~~~~~~~v~~s~d~~~~~~ 144 (333)
T d1ri6a_ 85 LTHISTDHQGQFVFVGSYNA------------------GNVSVTRLEDGLPVGVVDVV--EGLDGCHSANISPDNRTLWV 144 (333)
T ss_dssp CSEEEECTTSSEEEEEETTT------------------TEEEEEEEETTEEEEEEEEE--CCCTTBCCCEECTTSSEEEE
T ss_pred ceEEEEcCCCCEEeecccCC------------------Cceeeeccccccceeccccc--CCCccceEEEeeecceeeec
Confidence 35799999999998874322 23444444332211111111 11222335789999999877
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC-
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN- 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~- 395 (789)
.... ...+++++..+..... .. .........+.......+++++..++..... .....++.++.....
T Consensus 145 ~~~~----~~~i~~~~~~~~~~~~-~~-----~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 213 (333)
T d1ri6a_ 145 PALK----QDRICLFTVSDDGHLV-AQ-----DPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL-NSSVDVWELKDPHGNI 213 (333)
T ss_dssp EEGG----GTEEEEEEECTTSCEE-EE-----EEEEEECSTTCCEEEEEECTTSSEEEEEETT-TTEEEEEESSCTTSCC
T ss_pred cccc----cceeeEEEeccCCcce-ee-----eceeeeeecCCCccEEEEeccceeEEeeccc-cCceEEEeecccccce
Confidence 6533 3456677665421000 00 0000000111111234578888877765443 223344443333322
Q ss_pred -CeEEec--cCC--CCceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCCCceeeeccc-C-CeeEEEeecccCCcEEEE
Q 003878 396 -DWFEVI--PEA--ERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKNGSLLHQLPI-E-IGSVNAISARREDSVVFI 467 (789)
Q Consensus 396 -~~~~l~--~~~--~~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~-~-~~~v~~~s~s~d~~~l~~ 467 (789)
....+. +.. .......+.+++++ .+++.....+...++.++.+++.. ..... + ......++++||++.+++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~a~spDGk~l~v 292 (333)
T d1ri6a_ 214 ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL-SKEGFQPTETQPRGFNVDHSGKYLIA 292 (333)
T ss_dssp EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE-EEEEEEECSSSCCCEEECTTSSEEEE
T ss_pred eeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEE-EEEEEeCCCCCeeEEEEeCCCCEEEE
Confidence 111111 111 11223445667654 455544444444454444432221 21111 1 222345678999998775
Q ss_pred EEcCCCCCcEEEEEECCCCCceEEEee
Q 003878 468 SFTSFLIPGIVYQCNLKTETPEMKIFR 494 (789)
Q Consensus 468 ~~ss~~~P~~ly~~dl~tg~~~~~~l~ 494 (789)
+ .+...--.+|.+|.++|+ ++.+.
T Consensus 293 a-~~~~~~v~v~~id~~tG~--l~~~~ 316 (333)
T d1ri6a_ 293 A-GQKSHHISVYEIVGEQGL--LHEKG 316 (333)
T ss_dssp E-CTTTCEEEEEEEETTTTE--EEEEE
T ss_pred E-ECCCCeEEEEEEECCCCc--EEEEE
Confidence 4 333333457777888884 44443
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.80 E-value=1.3e-07 Score=100.00 Aligned_cols=221 Identities=8% Similarity=-0.007 Sum_probs=126.1
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecc-cccccccccccCccceeeeeecccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD-ALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYL 208 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 208 (789)
+...+..++|||||++||-+. ...+|+|||+.++..... .+... . .
T Consensus 50 H~~~V~~l~fsp~~~~l~s~s-----~D~~i~vWd~~~~~~~~~~~~~~~------~----------------~------ 96 (371)
T d1k8kc_ 50 HNGQVTGVDWAPDSNRIVTCG-----TDRNAYVWTLKGRTWKPTLVILRI------N----------------R------ 96 (371)
T ss_dssp CSSCEEEEEEETTTTEEEEEE-----TTSCEEEEEEETTEEEEEEECCCC------S----------------S------
T ss_pred CCCCEEEEEECCCCCEEEEEE-----CCCeEEEEeecccccccccccccc------c----------------c------
Confidence 344578899999999998432 234799999988754321 11111 0 0
Q ss_pred ccceeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC
Q 003878 209 RGIFFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE 288 (789)
Q Consensus 209 ~~~~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~ 288 (789)
....++|+||++.|+....+. .+.++.+......
T Consensus 97 ---------------------------~v~~i~~~p~~~~l~~~s~d~-------------------~i~i~~~~~~~~~ 130 (371)
T d1k8kc_ 97 ---------------------------AARCVRWAPNEKKFAVGSGSR-------------------VISICYFEQENDW 130 (371)
T ss_dssp ---------------------------CEEEEEECTTSSEEEEEETTS-------------------SEEEEEEETTTTE
T ss_pred ---------------------------cccccccccccccceeecccC-------------------cceeeeeeccccc
Confidence 246889999999998765332 2444444433222
Q ss_pred cEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCccc-ccccCCCC----ccEeeecccccee
Q 003878 289 DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEG-FKKRDGLL----PFVKLIDGFDAQY 363 (789)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~----~~~~l~~~~~~~~ 363 (789)
.........+...+..++|+|||++|+..+.+ ..+.++++......... ........ .............
T Consensus 131 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D-----~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 205 (371)
T d1k8kc_ 131 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD-----FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH 205 (371)
T ss_dssp EEEEEECTTCCSCEEEEEECTTSSEEEEEETT-----SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEE
T ss_pred ccccccccccccccccccccccccceeccccC-----cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEE
Confidence 22222222233446688999999999766533 33667776543211000 00000000 0111111111112
Q ss_pred -EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCc
Q 003878 364 -EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGS 441 (789)
Q Consensus 364 -~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~ 441 (789)
..|+|+|+.|+..+. +..|..+|+.++.....+..+. ..+.++.+++++.+++... ++...++.++...+.
T Consensus 206 ~~~~s~~g~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~--~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~ 277 (371)
T d1k8kc_ 206 GVCFSANGSRVAWVSH----DSTVCLADADKKMAVATLASET--LPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGK 277 (371)
T ss_dssp EEEECSSSSEEEEEET----TTEEEEEEGGGTTEEEEEECSS--CCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTE
T ss_pred EEEeeccccccccccc----CCcceEEeeecccceeeeeccc--ccceeeeecCCCCEEEEEc-CCceEEEEeeCCCce
Confidence 248999998876553 3679999998876444554443 4577899998777776544 555677777765443
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.79 E-value=7.9e-08 Score=100.58 Aligned_cols=114 Identities=16% Similarity=0.151 Sum_probs=75.9
Q ss_pred CCccEEEEEcCCCCccCC------CCCCHHH---HHHHHcCCeEEEEEeecCCCC--CChhHHhc--c---cccCCcchH
Q 003878 536 GSHPCLLYGYGGFNISVT------PSFSVSR---TILMRHLGAVFCIANIRGGGE--YGEEWHKG--G---ALAKKQNCF 599 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~------~~~~~~~---~~~l~~~G~~v~~~~~RG~g~--~g~~~~~~--~---~~~~~~~~~ 599 (789)
.+.++||+.|+--|.+.. ++|-..+ ...++-.-|-|+++|+-|++. .|..-... + ......-++
T Consensus 37 ~~~NaVlv~h~~tg~~~~~~~~~~~gWW~~liG~g~alDt~kyfVI~~n~lG~~~gSs~p~s~~p~tg~~~g~~FP~iti 116 (357)
T d2b61a1 37 EKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTTGPSSINPQTGKPYGSQFPNIVV 116 (357)
T ss_dssp TCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSSCTTSBCTTTSSBCGGGCCCCCH
T ss_pred CCCCEEEEcCCCCccccccccCCCCCcHHHhcCCCCccCCCceEEEEecccCCccccCCcCCCCCCCCCCCCcccccchh
Confidence 456899999996555332 1221111 123444669999999998653 22211000 0 012334678
Q ss_pred HHHHHHHHHHHHcCCCCCCcE-EEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 600 DDFISASEYLISAGYTQSRKL-CIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 600 ~D~~~~~~~L~~~~~~d~~~i-~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
.|.+.+-..|+++- .-+|| +|+|+||||+.++..+.++||+...+|+.+.
T Consensus 117 ~D~v~aq~~Ll~~L--GI~~l~~viG~SmGGmqAl~wa~~~Pd~v~~~i~i~~ 167 (357)
T d2b61a1 117 QDIVKVQKALLEHL--GISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCS 167 (357)
T ss_dssp HHHHHHHHHHHHHT--TCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESC
T ss_pred HHHHHHHHHHHHHh--CcceEEEEecccHHHHHHHHHHHhhhHHHhhhccccc
Confidence 99999998888762 33577 8889999999999999999999998877654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.78 E-value=2.3e-07 Score=96.60 Aligned_cols=261 Identities=11% Similarity=-0.021 Sum_probs=136.1
Q ss_pred EeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEE
Q 003878 138 SVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYL 217 (789)
Q Consensus 138 ~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 217 (789)
.+||||++++.+....+....++++||+++|+.+. .+..-
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~-~~~~g--------------------------------------- 47 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG-MIDGG--------------------------------------- 47 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE-EEEEC---------------------------------------
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEE-EEECC---------------------------------------
Confidence 47999999955543445556799999999997764 22211
Q ss_pred eeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCC
Q 003878 218 FSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE 297 (789)
Q Consensus 218 ~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~ 297 (789)
...+++|||||+.||+....... .....+...|+++++.+......+.... .
T Consensus 48 ------------------~~~~~a~SpDg~~l~v~~~~~~~---------~~~g~~d~~v~v~D~~t~~~~~~~~~~~-~ 99 (355)
T d2bbkh_ 48 ------------------FLPNPVVADDGSFIAHASTVFSR---------IARGERTDYVEVFDPVTLLPTADIELPD-A 99 (355)
T ss_dssp ------------------SSCEEEECTTSSCEEEEEEEEEE---------TTEEEEEEEEEEECTTTCCEEEEEEETT-C
T ss_pred ------------------CCCceEEcCCCCEEEEEeCCCcc---------ccccCCCCEEEEEECCCCCEEEEEecCC-c
Confidence 13579999999999886532110 0001233468888887754332221111 1
Q ss_pred CCee----EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEE
Q 003878 298 HPKY----IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVF 373 (789)
Q Consensus 298 ~~~~----~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l 373 (789)
.... ...+.+||||+++++..... ...+++++..+++.- ..+. .................+++||+.+
T Consensus 100 ~~~~~~~~~~~~~~s~dg~~~~v~~~~~---~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~dg~~~ 171 (355)
T d2bbkh_ 100 PRFLVGTYPWMTSLTPDGKTLLFYQFSP---APAVGVVDLEGKAFK-RMLD----VPDCYHIFPTAPDTFFMHCRDGSLA 171 (355)
T ss_dssp CCCCBSCCGGGEEECTTSSEEEEEECSS---SCEEEEEETTTTEEE-EEEE----CCSEEEEEEEETTEEEEEETTSCEE
T ss_pred ceeecCCCCceEEEecCCCeeEEecCCC---CceeeeeecCCCcEe-eEEe----cCCcceEeecCCcceEEEcCCCCEE
Confidence 0000 12368999999998765322 356788888774200 0000 0000000000111223467888877
Q ss_pred EEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc---C-
Q 003878 374 TFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI---E- 449 (789)
Q Consensus 374 ~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~---~- 449 (789)
++..... ..+...+..... .. ....+....+..++..++....++ .++++++.+++. ..+.. .
T Consensus 172 ~v~~~~~---~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~-~~~~~~~~~~ 238 (355)
T d2bbkh_ 172 KVAFGTE---GTPEITHTEVFH------PE-DEFLINHPAYSQKAGRLVWPTYTG--KIHQIDLSSGDA-KFLPAVEALT 238 (355)
T ss_dssp EEECCSS---SCCEEEECCCCS------CT-TSCBCSCCEEETTTTEEEEEBTTS--EEEEEECTTSSC-EECCCEESSC
T ss_pred EEEecCC---CeEEEEeccccc------ce-ecceeeeccccCCCCeEEEecCCC--eEEEEecCCCcE-EEEeccCCcc
Confidence 6654332 233344443322 00 011222333444344444444554 688888876543 22111 0
Q ss_pred ---------CeeEEEeecccCCcEEEEEEcCC------CCCcEEEEEECCCCC
Q 003878 450 ---------IGSVNAISARREDSVVFISFTSF------LIPGIVYQCNLKTET 487 (789)
Q Consensus 450 ---------~~~v~~~s~s~d~~~l~~~~ss~------~~P~~ly~~dl~tg~ 487 (789)
......+.+++++..+++..... .....++.+|+.+++
T Consensus 239 ~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~ 291 (355)
T d2bbkh_ 239 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE 291 (355)
T ss_dssp HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred cceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCc
Confidence 00111345678888887665432 123578999998885
|
| >d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Esterase EstA species: Aspergillus niger [TaxId: 5061]
Probab=98.78 E-value=2.3e-08 Score=111.50 Aligned_cols=234 Identities=15% Similarity=0.104 Sum_probs=129.0
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCcc-CCCCCCHHHHHHHHcCCeEEEEEeecCCC-CCChhHHhcccc
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNIS-VTPSFSVSRTILMRHLGAVFCIANIRGGG-EYGEEWHKGGAL 592 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~-~~~~~~~~~~~~l~~~G~~v~~~~~RG~g-~~g~~~~~~~~~ 592 (789)
+.|- +.+-|+.|+....+++.||+|++|||.-.. ....+......+..+.+.+|+.+|||-|- +|-..-... ..
T Consensus 77 sEDC---L~LnI~~P~~~~~~~~~PV~v~ihGG~~~~G~~~~~~~~~~~~~~~~~vVvVt~nYRlg~~GFl~~~~~~-~~ 152 (517)
T d1ukca_ 77 SEDC---LFINVFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVR-QN 152 (517)
T ss_dssp ESCC---CEEEEEEETTCCTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHH-HS
T ss_pred CCcC---CEEEEEeCCCCCCCCCceEEEEEcCCccccCCCccccchhhhhhhccccceEEEEecccceeecCccccc-cc
Confidence 4566 445566787655567889999999984222 22334433333444467899999999642 111100000 01
Q ss_pred cCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHh----CCCceeEEEecCCccccccccccc--C
Q 003878 593 AKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQ----RPDLFGCALAHVGVMDMLRYHKFT--I 663 (789)
Q Consensus 593 ~~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~----~pd~f~a~v~~~p~~d~~~~~~~~--~ 663 (789)
..+...+.|.+.|++|+.++ ---||++|.|+|+|+||..+.+.+.. ...+|+.+|+++|........... .
T Consensus 153 ~~~N~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s~~~~~~gLF~raI~qSg~~~~~~~~~~~~~~ 232 (517)
T d1ukca_ 153 GDLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWPTQRTVSEMEFQ 232 (517)
T ss_dssp SCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCCCCCCSGGGHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHhhcCCcccccccccccchhhHHHHHhccccccccccceeeecccccccccchhhHHHH
Confidence 12244689999999999876 22499999999999999998866553 123999999999865432211100 0
Q ss_pred CccchhhcCCCCcHHHHHHHHhcCcccCCCCCCCCCC--CCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCC
Q 003878 664 GHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRPWEQNP--DKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLE 741 (789)
Q Consensus 664 ~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~~~~~~--~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~ 741 (789)
........|+....+..+.|++.+...-+... .... .......+.....-.-|..+-+.++.+.++.=+
T Consensus 233 ~~~~a~~lg~~~~~~~l~cLr~~~~~~L~~a~-~~~~~~~~~~~~~~~~~~~pv~Dg~~lp~~p~~~~~~g~-------- 303 (517)
T d1ukca_ 233 FERFVNDTGCSSARDSLECLREQDIATIQKGN-TGSPFPGGSSSPLPDWYFLPVTDGSLVPDELYNAFDAGN-------- 303 (517)
T ss_dssp HHHHHHHTTCTTCSSHHHHHHHSCHHHHHHHS-SCCCCTTCCSSSCCSCCSCCCCCSSSSCSCHHHHHHHTC--------
T ss_pred HHHHHhhhcccchhhhHhhhccCCHHHHHHhh-hccccccccccccccccccceecccccccChHHHhhcCC--------
Confidence 01112334665443445666655432111000 0000 000000011111222455555556555443322
Q ss_pred CCCCCCcEEEEEeCCCCcCCCC
Q 003878 742 NSPQTNPIIGRIERKAGHGVGL 763 (789)
Q Consensus 742 ~~~~~~~~~l~~~~~~gH~~~~ 763 (789)
...+|+.+-...++|..+..
T Consensus 304 --~~~vplliG~t~~Eg~~f~~ 323 (517)
T d1ukca_ 304 --FIKVPVLVGDDTDEGSNFAY 323 (517)
T ss_dssp --SCCCCEEEEEETBGGGGTSC
T ss_pred --ccccceEEeeccCchhhhhc
Confidence 23789999999999887643
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=98.77 E-value=2.4e-09 Score=120.25 Aligned_cols=224 Identities=17% Similarity=0.144 Sum_probs=129.1
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCCHHH---HHHHHcCCeEEEEEeecCCC-CCCh--hHH
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSR---TILMRHLGAVFCIANIRGGG-EYGE--EWH 587 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~~~~---~~~l~~~G~~v~~~~~RG~g-~~g~--~~~ 587 (789)
+.|- +.+-|+.|+....+++.|||||+|||...... ..|.+.. ..++..++++|+.+|||-|- +|-. .-.
T Consensus 94 sEDC---L~LnI~~P~~~~~~~~~PVlv~ihGG~f~~g~~~~~~~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~~~~ 170 (534)
T d1llfa_ 94 SEDC---LTINVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIK 170 (534)
T ss_dssp CSCC---CEEEEEECTTCCTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHH
T ss_pred CCcC---CEEEEEECCCCCCCCCCeEEEEECCCccccCCCCCCCchhccchhhhccCCeEEEEeecCCCcccccCCcccc
Confidence 4566 55666788876667899999999998532222 2233321 23344589999999999642 1111 111
Q ss_pred hcccccCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHh-----CC---CceeEEEecCCccccc
Q 003878 588 KGGALAKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQ-----RP---DLFGCALAHVGVMDML 656 (789)
Q Consensus 588 ~~~~~~~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~-----~p---d~f~a~v~~~p~~d~~ 656 (789)
. ...+...+.|.+.|++|+.++ ---||+||.|+|+|+||..+.+.+.. -| .+|+.+|+++|..-..
T Consensus 171 ~---~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~~~~~~~sp~s~gLF~raI~qSGs~~~~ 247 (534)
T d1llfa_ 171 A---EGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGAMVPS 247 (534)
T ss_dssp H---HTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCCSCCC
T ss_pred c---ccccccchhHHHHHHHHHHhhhhhhccCCcceeeeeecchHHHHHHHHhccccccccchhhhhhhhhhccCccccC
Confidence 1 113345689999999999876 12599999999999999988776642 12 2799999998742111
Q ss_pred cccccc----CCccchhhcCCCCcHHHHHHHHhcCcccCCCCC-----CCCCCCCCCCCCeEEEEecCCCCCCCcHHHHH
Q 003878 657 RYHKFT----IGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRP-----WEQNPDKPFQYPSTLLLTADHDDRVVPLHSLK 727 (789)
Q Consensus 657 ~~~~~~----~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~-----~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~ 727 (789)
...... .........|++...+..+.|++.++-.-++.. +...........|+ -|..+-+.++.+
T Consensus 248 ~~~~~~~~~~~~~~la~~lGc~~~~~~l~cLR~~~a~~L~~a~~~~~~~~~~~~~~~~f~Pv------iDG~~lp~~p~~ 321 (534)
T d1llfa_ 248 DPVDGTYGNEIYDLFVSSAGCGSASDKLACLRSASSDTLLDATNNTPGFLAYSSLRLSYLPR------PDGKNITDDMYK 321 (534)
T ss_dssp CCTTSHHHHHHHHHHHHHTTCTTCSSHHHHHHHSCHHHHHHHHHTSCCTTSTTTTSCSSCCC------CCSSSSCSCHHH
T ss_pred cccchhhhhhhhhHHHhhhcccCcccccccccCCCHHHHHHHHHhcccccccccccceeecc------cccccCCCChhh
Confidence 111000 011122345776555556677776543221100 00000000012233 355555666655
Q ss_pred HHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcC
Q 003878 728 LLATMQYVLCTSLENSPQTNPIIGRIERKAGHG 760 (789)
Q Consensus 728 ~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~ 760 (789)
+.+ +. ...++|+.+-...++|..
T Consensus 322 ~l~---~g-------~~~~vPlliG~~~dEg~~ 344 (534)
T d1llfa_ 322 LVR---DG-------KYASVPVIIGDQNDEGTI 344 (534)
T ss_dssp HHH---TT-------CSCCCCEEEEEETBTTHH
T ss_pred Hhh---cC-------CcccceeEEeeecCccce
Confidence 443 32 223789888888888753
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=2.3e-06 Score=88.58 Aligned_cols=218 Identities=10% Similarity=0.006 Sum_probs=138.1
Q ss_pred EEeeeccccceeeeeeec--------c-------cccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEE
Q 003878 216 YLFSLVKSTIYSFWSVVS--------Q-------FKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYH 280 (789)
Q Consensus 216 ~~~~s~~~g~~~l~~~~~--------~-------~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (789)
+++++. +|.-.||.+.. . -...+++|+|||+.|+....+ ..|.+|
T Consensus 65 ~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d-------------------g~i~iw 124 (337)
T d1gxra_ 65 HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA-------------------STLSIW 124 (337)
T ss_dssp EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS-------------------SEEEEE
T ss_pred EEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc-------------------cccccc
Confidence 556665 68889997643 0 013578999999998765432 358888
Q ss_pred ECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc
Q 003878 281 FLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD 360 (789)
Q Consensus 281 ~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 360 (789)
++.....+-...... +...+....++||+..++....+ ..+.++++.++. ..........
T Consensus 125 d~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~d-----~~i~~~~~~~~~-------------~~~~~~~~~~ 184 (337)
T d1gxra_ 125 DLAAPTPRIKAELTS--SAPACYALAISPDSKVCFSCCSD-----GNIAVWDLHNQT-------------LVRQFQGHTD 184 (337)
T ss_dssp ECCCC--EEEEEEEC--SSSCEEEEEECTTSSEEEEEETT-----SCEEEEETTTTE-------------EEEEECCCSS
T ss_pred ccccccccccccccc--ccccccccccccccccccccccc-----cccccccccccc-------------cccccccccc
Confidence 887543322222222 22335578899999998865532 348888887642 1111111111
Q ss_pred cee-EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCC
Q 003878 361 AQY-EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKN 439 (789)
Q Consensus 361 ~~~-~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~t 439 (789)
... ..|++++..+++.+. ++.+..+|+.+++... ..... ..+..+.+.+++.++++...++ .+.+|++.+
T Consensus 185 ~v~~l~~s~~~~~~~~~~~----d~~v~i~d~~~~~~~~-~~~~~--~~i~~l~~~~~~~~l~~~~~d~--~i~i~d~~~ 255 (337)
T d1gxra_ 185 GASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQLQ-QHDFT--SQIFSLGYCPTGEWLAVGMESS--NVEVLHVNK 255 (337)
T ss_dssp CEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEE-EEECS--SCEEEEEECTTSSEEEEEETTS--CEEEEETTS
T ss_pred ccccccccccccccccccc----cccccccccccceeec-ccccc--cceEEEEEcccccccceecccc--ccccccccc
Confidence 122 237889988876543 3678899998775222 22222 4577888888666777777776 688899987
Q ss_pred CceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 440 GSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 440 G~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
++. .........+..+.++++++.++... .-+.++.||..+++
T Consensus 256 ~~~-~~~~~~~~~i~~v~~s~~g~~l~s~s----~Dg~i~iwd~~~~~ 298 (337)
T d1gxra_ 256 PDK-YQLHLHESCVLSLKFAYCGKWFVSTG----KDNLLNAWRTPYGA 298 (337)
T ss_dssp SCE-EEECCCSSCEEEEEECTTSSEEEEEE----TTSEEEEEETTTCC
T ss_pred ccc-ccccccccccceEEECCCCCEEEEEe----CCCeEEEEECCCCC
Confidence 665 33344456678889999998665332 23689999998885
|
| >d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=4.6e-08 Score=96.98 Aligned_cols=98 Identities=18% Similarity=0.184 Sum_probs=68.1
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHc--CCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRH--LGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~--~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
.|+ |++||..++.. .|... ...|.+ .||.|+++|.||.|.... .....++++...+..++++.
T Consensus 3 ~Pv-vllHG~~~~~~--~~~~~-~~~l~~~~~~~~v~~~d~~G~g~S~~---------~~~~~~~~~~~~l~~~l~~l-- 67 (268)
T d1pjaa_ 3 KPV-IVVHGLFDSSY--SFRHL-LEYINETHPGTVVTVLDLFDGRESLR---------PLWEQVQGFREAVVPIMAKA-- 67 (268)
T ss_dssp CCE-EEECCTTCCGG--GGHHH-HHHHHHHSTTCCEEECCSSCSGGGGS---------CHHHHHHHHHHHHHHHHHHC--
T ss_pred CCE-EEECCCCCCHH--HHHHH-HHHHHhhCCCeEEEEeCCCCCCCCCC---------ccccCHHHHHHHHHHHHhcc--
Confidence 354 56899876543 44433 334432 389999999999764321 11234566666666666553
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCC-ceeEEEecCC
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPD-LFGCALAHVG 651 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd-~f~a~v~~~p 651 (789)
. +++.++|||+||.++..+|.++|+ +++.+|+..+
T Consensus 68 ~-~~~~lvGhS~GG~ia~~~a~~~p~~~v~~lvl~~~ 103 (268)
T d1pjaa_ 68 P-QGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSS 103 (268)
T ss_dssp T-TCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESC
T ss_pred C-CeEEEEccccHHHHHHHHHHHCCccccceEEEECC
Confidence 3 799999999999999999999998 5888877654
|
| >d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase A species: Bacillus subtilis [TaxId: 1423]
Probab=98.73 E-value=4.1e-08 Score=92.94 Aligned_cols=169 Identities=13% Similarity=-0.075 Sum_probs=102.8
Q ss_pred ccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCCCC
Q 003878 538 HPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYTQS 617 (789)
Q Consensus 538 ~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~d~ 617 (789)
.|+ |++||..+... .|.. ....|.++||.++.++.+|.+.....- ....+++.+.++.+.++ ...
T Consensus 3 ~PV-v~vHG~~~~~~--~~~~-l~~~l~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~i~~~~~~--~~~ 67 (179)
T d1ispa_ 3 NPV-VMVHGIGGASF--NFAG-IKSYLVSQGWSRDKLYAVDFWDKTGTN---------YNNGPVLSRFVQKVLDE--TGA 67 (179)
T ss_dssp CCE-EEECCTTCCGG--GGHH-HHHHHHHTTCCGGGEEECCCSCTTCCH---------HHHHHHHHHHHHHHHHH--HCC
T ss_pred CCE-EEECCCCCCHH--HHHH-HHHHHHHcCCeEEEEecCCcccccccc---------chhhhhHHHHHHHHHHh--cCC
Confidence 465 55799765433 3443 445666699999999988765432111 12235566666666654 234
Q ss_pred CcEEEEeeChHHHHHHHHHHhC--CCceeEEEecCCcccccccccccCCccchhhcCCCCcHHHHHHHHhcCcccCCCCC
Q 003878 618 RKLCIEGGSNGGLLVGACINQR--PDLFGCALAHVGVMDMLRYHKFTIGHAWVSDFGCSEEEEEFYWLIKYSPLHNVRRP 695 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~--pd~f~a~v~~~p~~d~~~~~~~~~~~~~~~e~g~p~~~~~~~~l~~~sP~~~v~~~ 695 (789)
+++.++|||+||.++..++.++ |++++.+|+..+........ .+.....
T Consensus 68 ~~v~lvGHSmGG~va~~~~~~~~~~~~V~~~V~l~~p~~g~~~~----------------------------~l~~~~~- 118 (179)
T d1ispa_ 68 KKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTGK----------------------------ALPGTDP- 118 (179)
T ss_dssp SCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCSB----------------------------CCCCSCT-
T ss_pred ceEEEEeecCcCHHHHHHHHHcCCchhhCEEEEECCCCCCchhh----------------------------hcCCccc-
Confidence 6899999999999999988776 67888888765532110000 0000111
Q ss_pred CCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCCCchhhHHHHHHHH
Q 003878 696 WEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVGLPTQKMIDEAADR 775 (789)
Q Consensus 696 ~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~~~~~~~~~~~~~~ 775 (789)
....|++.++|..|..|++..+ ++. +. +....++.||....... +..+.+
T Consensus 119 --------~~~~~~~~i~~~~D~~v~~~~~-----~l~------------~~--~~~~~~~~~H~~l~~~~---~v~~~i 168 (179)
T d1ispa_ 119 --------NQKILYTSIYSSADMIVMNYLS-----RLD------------GA--RNVQIHGVGHIGLLYSS---QVNSLI 168 (179)
T ss_dssp --------TCCCEEEEEEETTCSSSCHHHH-----CCB------------TS--EEEEESSCCTGGGGGCH---HHHHHH
T ss_pred --------ccCceEEEEEecCCcccCchhh-----cCC------------Cc--eEEEECCCCchhhccCH---HHHHHH
Confidence 1256999999999999998653 122 22 34566899997432222 334455
Q ss_pred HHHHH
Q 003878 776 YGFMA 780 (789)
Q Consensus 776 ~~fl~ 780 (789)
.+||+
T Consensus 169 ~~~L~ 173 (179)
T d1ispa_ 169 KEGLN 173 (179)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55554
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=6.2e-06 Score=83.75 Aligned_cols=153 Identities=13% Similarity=0.090 Sum_probs=92.9
Q ss_pred EEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCc
Q 003878 305 GHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKY 384 (789)
Q Consensus 305 ~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~ 384 (789)
..+++||++++....+ ..|.++|+..+. ...... ........++++++.|+..+. ++
T Consensus 181 ~~~~~~~~~l~s~~~d-----g~i~~~d~~~~~-------------~~~~~~-~~~~~v~~~~~~~~~l~s~s~----d~ 237 (342)
T d2ovrb2 181 YSLQFDGIHVVSGSLD-----TSIRVWDVETGN-------------CIHTLT-GHQSLTSGMELKDNILVSGNA----DS 237 (342)
T ss_dssp EEEEECSSEEEEEETT-----SCEEEEETTTCC-------------EEEEEC-CCCSCEEEEEEETTEEEEEET----TS
T ss_pred ccccCCCCEEEEEeCC-----CeEEEeecccce-------------eeeEec-ccccceeEEecCCCEEEEEcC----CC
Confidence 4567789988766533 348888987642 122222 112223345667777665433 35
Q ss_pred eEEEEECCCCCCeEEeccCCC-CceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc-----CCeeEEEeec
Q 003878 385 KIIRVDLKEPNDWFEVIPEAE-RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI-----EIGSVNAISA 458 (789)
Q Consensus 385 ~L~~~dl~~~~~~~~l~~~~~-~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~-----~~~~v~~~s~ 458 (789)
.|..+++...+....+..+.. ...+..+.+.+ .++++...++ .|++||+++|+.++.+.. ..+.|..+++
T Consensus 238 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~s~Dg--~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~ 313 (342)
T d2ovrb2 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDG--TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 313 (342)
T ss_dssp CEEEEETTTCCEEEEECSTTSCSSCEEEEEECS--SEEEEEETTS--EEEEEETTTCCEEEEEEECTTGGGTCEEEEEEE
T ss_pred EEEEEecccccccccccccceeeeceeecccCC--CeeEEEcCCC--EEEEEECCCCCEEEEEecccCCCCCCCEEEEEE
Confidence 788899887763333333221 23344555544 4666777777 799999999987666542 1456888889
Q ss_pred ccCCcEEEEEEcCCCCCcEEEEEECC
Q 003878 459 RREDSVVFISFTSFLIPGIVYQCNLK 484 (789)
Q Consensus 459 s~d~~~l~~~~ss~~~P~~ly~~dl~ 484 (789)
++++..++....+-+.-..++.+|++
T Consensus 314 s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 314 SNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp CSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred CCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 98876555443333445678888875
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.69 E-value=2.7e-06 Score=89.24 Aligned_cols=245 Identities=17% Similarity=0.058 Sum_probs=140.2
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..+..++|||||++|+.+.. ...|++||..+++.+... ... . +
T Consensus 122 ~~V~~l~~s~~~~~l~s~~~-----dg~v~i~~~~~~~~~~~~-~~h------~-~------------------------ 164 (388)
T d1erja_ 122 LYIRSVCFSPDGKFLATGAE-----DRLIRIWDIENRKIVMIL-QGH------E-Q------------------------ 164 (388)
T ss_dssp CBEEEEEECTTSSEEEEEET-----TSCEEEEETTTTEEEEEE-CCC------S-S------------------------
T ss_pred CCEEEEEECCCCCcceeccc-----cccccccccccccccccc-ccc------c-c------------------------
Confidence 45788999999999985432 347999999988655321 110 0 0
Q ss_pred eeeEEEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDIL 291 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~ 291 (789)
....+.|++++..++....+ ..+.++++.+... ..
T Consensus 165 ------------------------~v~~~~~~~~~~~~~~~~~~-------------------~~i~~~d~~~~~~--~~ 199 (388)
T d1erja_ 165 ------------------------DIYSLDYFPSGDKLVSGSGD-------------------RTVRIWDLRTGQC--SL 199 (388)
T ss_dssp ------------------------CEEEEEECTTSSEEEEEETT-------------------SEEEEEETTTTEE--EE
T ss_pred ------------------------cccccccccccccccccccc-------------------eeeeeeecccccc--cc
Confidence 24678899999988866432 2477777765321 12
Q ss_pred EEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCC
Q 003878 292 CWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDD 370 (789)
Q Consensus 292 ~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG 370 (789)
..... ........+++||++|+....+ ..|+++++.++... ..+. .............. ..|+|+|
T Consensus 200 ~~~~~--~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~~~~~~~~~-~~~~-----~~~~~~~~h~~~v~~l~~s~~~ 266 (388)
T d1erja_ 200 TLSIE--DGVTTVAVSPGDGKYIAAGSLD-----RAVRVWDSETGFLV-ERLD-----SENESGTGHKDSVYSVVFTRDG 266 (388)
T ss_dssp EEECS--SCEEEEEECSTTCCEEEEEETT-----SCEEEEETTTCCEE-EEEC-----------CCCSSCEEEEEECTTS
T ss_pred ccccc--cccccccccCCCCCeEEEEcCC-----CeEEEeecccCccc-eeec-----cccccccCCCCCEEEEEECCCC
Confidence 22221 2222223345588888765432 34888888764210 0000 00000001111112 3488999
Q ss_pred CEEEEEECCCCCCceEEEEECCCCCC------------eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC
Q 003878 371 TVFTFLTNKDAPKYKIIRVDLKEPND------------WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 371 ~~l~~~tn~~~~~~~L~~~dl~~~~~------------~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~ 438 (789)
+.|+..+. ++.|..+|+.++.. ......+ ...+..+++++++.++++...++ .|++||+.
T Consensus 267 ~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~sg~~dg--~i~vwd~~ 338 (388)
T d1erja_ 267 QSVVSGSL----DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDR--GVLFWDKK 338 (388)
T ss_dssp SEEEEEET----TSEEEEEEC---------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTS--EEEEEETT
T ss_pred CEEEEEEC----CCcEEEEeccCCccccccccccccceeeecccc--cceEEEEEECCCCCEEEEEeCCC--EEEEEECC
Confidence 98775443 35788888765431 0111112 24567888888677788888887 79999999
Q ss_pred CCceeeecccCCeeEEEee------cccCCcEEEEEEcCCCCCcEEEEEEC
Q 003878 439 NGSLLHQLPIEIGSVNAIS------ARREDSVVFISFTSFLIPGIVYQCNL 483 (789)
Q Consensus 439 tG~~~~~l~~~~~~v~~~s------~s~d~~~l~~~~ss~~~P~~ly~~dl 483 (789)
+|+.+..+..+.+.|..+. ++|+++.++ +.+. -++|..|++
T Consensus 339 ~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~-s~s~---Dg~I~iW~~ 385 (388)
T d1erja_ 339 SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA-TGSG---DCKARIWKY 385 (388)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEE-EEET---TSEEEEEEE
T ss_pred CCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEE-EEeC---CCEEEEEee
Confidence 9988777766655565543 456776544 3332 357777775
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=98.68 E-value=1e-06 Score=92.13 Aligned_cols=221 Identities=13% Similarity=0.097 Sum_probs=128.7
Q ss_pred CCccEEEEEcCCCCccCC----------CCCCHH---HHHHHHcCCeEEEEEeecCCCCC--ChhHHhccc-----ccCC
Q 003878 536 GSHPCLLYGYGGFNISVT----------PSFSVS---RTILMRHLGAVFCIANIRGGGEY--GEEWHKGGA-----LAKK 595 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~----------~~~~~~---~~~~l~~~G~~v~~~~~RG~g~~--g~~~~~~~~-----~~~~ 595 (789)
.+.++||+.|+-.|.+.- +.|-.. -...++-.-|-|+++|.-|++.- |..-..... ....
T Consensus 40 ~~~NaVlv~h~~tG~~~~~g~~~~~~~~~gww~~liG~g~~lDt~~yfVI~~n~lG~~~~ss~~~s~~p~~~~~yg~~fP 119 (362)
T d2pl5a1 40 SKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGGCKGSSGPLSIHPETSTPYGSRFP 119 (362)
T ss_dssp TSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSSSSSSTTSBCTTTSSBCGGGSC
T ss_pred CCCCEEEECCCCCcchhccccCCccCCCcchHHHhcCCCCccCccccEEEeeccccCcccccCccccccccccccCcCCc
Confidence 456899999996655322 222110 01233445689999999986532 221111000 1123
Q ss_pred cchHHHHHHHHHHHHHcCCCCCCcEE-EEeeChHHHHHHHHHHhCCCceeEEEecCCccccc--------------cccc
Q 003878 596 QNCFDDFISASEYLISAGYTQSRKLC-IEGGSNGGLLVGACINQRPDLFGCALAHVGVMDML--------------RYHK 660 (789)
Q Consensus 596 ~~~~~D~~~~~~~L~~~~~~d~~~i~-i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~d~~--------------~~~~ 660 (789)
.-++.|+.++-..|++.--+ +|+. |+|+||||+.++..+.++|+.+..+|..+.-.-.. ...+
T Consensus 120 ~~t~~D~v~~~~~ll~~LGI--~~l~~viG~SmGGmqAl~wA~~yPd~v~~~v~ia~sa~~s~~~~~~~~~~~~aI~~Dp 197 (362)
T d2pl5a1 120 FVSIQDMVKAQKLLVESLGI--EKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMASTAEHSAMQIAFNEVGRQAILSDP 197 (362)
T ss_dssp CCCHHHHHHHHHHHHHHTTC--SSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSBCCHHHHHHHHHHHHHHHTST
T ss_pred cchhHHHHHHHHHHHHHhCc--CeeEEEeehhHHHHHHHHHHHhCchHhhhhcccccccccCHHHHHHHHHHHHHHhcCC
Confidence 45789998888877776223 3554 88999999999999999999999998775421100 0000
Q ss_pred -c-------------------------cCC-----------------------ccchhhcCCC----CcHHHHHHHHhcC
Q 003878 661 -F-------------------------TIG-----------------------HAWVSDFGCS----EEEEEFYWLIKYS 687 (789)
Q Consensus 661 -~-------------------------~~~-----------------------~~~~~e~g~p----~~~~~~~~l~~~s 687 (789)
+ ... +.|....|.. .|+..+-+|.+..
T Consensus 198 ~~~~G~Y~~~~P~~GL~~AR~~~~~~y~s~~~~~~~f~~~~~~~~~~~~~~~ve~yl~~~g~k~~~rfDan~yl~l~~a~ 277 (362)
T d2pl5a1 198 NWKNGLYDENSPRKGLALARMVGHITYLSDDKMREKFGRNPPRGNILSTDFAVGSYLIYQGESFVDRFDANSYIYVTKAL 277 (362)
T ss_dssp TCGGGTCSSSCCHHHHHHHHHHHHHTTBCHHHHHHHHTTSCCSSCTTTTTTTSCGGGGSTTCCSSSCCCHHHHHHHHHHH
T ss_pred ccccCCcccCChhHHHHHHHHHHHHHHcCchhhhhhhccccccccccchhHHHHHHHHHHHHHHHhcCCHHHHHHHHhhh
Confidence 0 000 0011111111 2333332222111
Q ss_pred cccC----------CCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEe-CC
Q 003878 688 PLHN----------VRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIE-RK 756 (789)
Q Consensus 688 P~~~----------v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~-~~ 756 (789)
-.+. +.++ ..++|++..+.|-.+|+++.+.+++.|..+ +..+++++. -.
T Consensus 278 ~~~Di~~~~~l~~aL~~I----------~AkvLvi~~~sD~lFpp~~~~~~a~~l~~a----------~~~v~~~eI~S~ 337 (362)
T d2pl5a1 278 DHYSLGKGKELTAALSNA----------TCRFLVVSYSSDWLYPPAQSREIVKSLEAA----------DKRVFYVELQSG 337 (362)
T ss_dssp HHCBCCSHHHHHHHHTTC----------CSEEEEEEETTCCSSCHHHHHHHHHHHHHT----------TCCEEEEEECCC
T ss_pred hcccccccccHHHHHhhC----------CCCEEEEEeCcccCcCHHHHHHHHHHHHhC----------CCCeEEEEeCCC
Confidence 1111 2333 689999999999999999999999999988 888877755 45
Q ss_pred CCcCCCCchhhHHHHHHHHHHHHH
Q 003878 757 AGHGVGLPTQKMIDEAADRYGFMA 780 (789)
Q Consensus 757 ~gH~~~~~~~~~~~~~~~~~~fl~ 780 (789)
.||...-...+ +....+-+||+
T Consensus 338 ~GHdaFL~e~~--~~~~~I~~FL~ 359 (362)
T d2pl5a1 338 EGHDSFLLKNP--KQIEILKGFLE 359 (362)
T ss_dssp BSSGGGGSCCH--HHHHHHHHHHH
T ss_pred CCcchhccCHH--HHHHHHHHHHc
Confidence 88953222222 34445666664
|
| >d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Mammalian carboxylesterase (liver carboxylesterase I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=3.1e-08 Score=110.88 Aligned_cols=133 Identities=20% Similarity=0.224 Sum_probs=92.7
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcc-cc
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGG-AL 592 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~-~~ 592 (789)
+.|- +.+-|+.|++...+.+.||+|++|||...... ..+.. ..++.+++++|+.+|||-|- +| |...+ ..
T Consensus 93 sEDC---L~LnI~~P~~~~~~~~lPV~v~ihGG~~~~gs~~~~~~--~~~~~~~~vIvVt~nYRLg~-~G--Fl~~~~~~ 164 (532)
T d2h7ca1 93 SEDC---LYLNIYTPADLTKKNRLPVMVWIHGGGLMVGAASTYDG--LALAAHENVVVVTIQYRLGI-WG--FFSTGDEH 164 (532)
T ss_dssp ESCC---CEEEEEECSCTTSCCCEEEEEEECCSTTTSCCSTTSCC--HHHHHHHTCEEEEECCCCHH-HH--HCCCSSTT
T ss_pred CCcC---CEEEEEECCCCCCCCCcEEEEEEeCCcccccccccCCc--hhhhhcCceEEEEEeeccCC-Cc--cccccccc
Confidence 4566 44566778876667789999999998433222 23333 24555689999999999642 11 11111 11
Q ss_pred cCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHh--CCCceeEEEecCCcccc
Q 003878 593 AKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVMDM 655 (789)
Q Consensus 593 ~~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~pd~f~a~v~~~p~~d~ 655 (789)
..+...+.|.+.|++|+.++ ---||++|.|+|+|+||..+...+.. ...+|+.+|++++....
T Consensus 165 ~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG~~~~ 232 (532)
T d2h7ca1 165 SRGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVALT 232 (532)
T ss_dssp CCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTTC
T ss_pred cccccccHHHHHHHHHHHHHHHHhcCCcceeeeeccccccchHHHHHhhhhccCcchhhhhhcccccC
Confidence 22345689999999999876 22499999999999999998887664 24599999999976543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.64 E-value=5.7e-07 Score=97.48 Aligned_cols=180 Identities=13% Similarity=-0.011 Sum_probs=99.8
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEec-CCCCeeEEEEEEecCCcEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD-PEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~-~~~~~~~~~~~~SpDG~~l~ 315 (789)
..+++|||||++||.... ...+.++++.+...+.+.-... ..+.....++.+||||++|+
T Consensus 64 ~~~v~fSpDG~~l~~~s~-------------------dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~ 124 (432)
T d1qksa2 64 VHISRLSASGRYLFVIGR-------------------DGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI 124 (432)
T ss_dssp EEEEEECTTSCEEEEEET-------------------TSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEE
T ss_pred eeEEEECCCCCEEEEEcC-------------------CCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEE
Confidence 478999999999986532 2358889987764432221121 11112233456788999998
Q ss_pred EEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
..... ...+.++|.+++... ..+......................++|||+.+++.... ...+..++..+++
T Consensus 125 vs~~~----~~~v~i~d~~t~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~---~~~i~~~d~~~~~ 196 (432)
T d1qksa2 125 AGAYW----PPQYVIMDGETLEPK-KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE---TGKILLVDYTDLN 196 (432)
T ss_dssp EEEEE----TTEEEEEETTTCCEE-EEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT---TTEEEEEETTCSS
T ss_pred EEcCC----CCeEEEEeCccccce-eeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc---CCeEEEEEccCCC
Confidence 76654 355888998875210 000000000000000011111123478999988776543 4678999987765
Q ss_pred CeE-EeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec
Q 003878 396 DWF-EVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL 446 (789)
Q Consensus 396 ~~~-~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l 446 (789)
..+ .-++.. ....++.++++++.++....++ ..+.+++.++++....+
T Consensus 197 ~~~~~~i~~g--~~~~~~~~spdg~~~~va~~~~-~~v~v~d~~~~~~~~~~ 245 (432)
T d1qksa2 197 NLKTTEISAE--RFLHDGGLDGSHRYFITAANAR-NKLVVIDTKEGKLVAIE 245 (432)
T ss_dssp EEEEEEEECC--SSEEEEEECTTSCEEEEEEGGG-TEEEEEETTTTEEEEEE
T ss_pred cceEEEEccc--CccccceECCCCCEEEEecccc-ceEEEeecccceEEEEe
Confidence 221 112332 3467888998766555555443 37888998876654333
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=98.62 E-value=2.8e-07 Score=96.99 Aligned_cols=135 Identities=12% Similarity=0.065 Sum_probs=86.9
Q ss_pred EecCCCceEEE-EEEEecC-CCCCCCCccEEEEEcCCCCccCCCCCCHHH---HHHHHcCCeEEEEEeecCCCC--CChh
Q 003878 513 VPSKDGSTKIP-MFIVSKK-NIKLDGSHPCLLYGYGGFNISVTPSFSVSR---TILMRHLGAVFCIANIRGGGE--YGEE 585 (789)
Q Consensus 513 ~~s~dg~~~i~-~~l~~p~-~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~---~~~l~~~G~~v~~~~~RG~g~--~g~~ 585 (789)
|+-..| ..|+ +.|.|.. +.-...+.++||+.|+-.+.+....|-... ...++-.-|-|+++|+-|++. .|+.
T Consensus 18 F~le~G-~~l~~~~laY~t~G~ln~~~~NaVlv~h~ltg~~~~~~WW~~liG~g~alDt~kyfVI~~n~lG~~~gst~p~ 96 (376)
T d2vata1 18 FTLESG-VILRDVPVAYKSWGRMNVSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGSPFGSAGPC 96 (376)
T ss_dssp EECTTS-CEEEEEEEEEEEESCCCTTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTCSSSSSSTT
T ss_pred EEeCCC-CCcCCceEEEEeecccCCCCCCEEEEcCCCcCCccccccHHHhCCCCCccCccceEEEEeccCCCCcCCCCCC
Confidence 445567 6664 6665553 211135679999999977665543331111 133455679999999988652 1221
Q ss_pred HHh---ccc----ccCCcchHHHHHHHHHHHHHc-CCCCCCcE-EEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 586 WHK---GGA----LAKKQNCFDDFISASEYLISA-GYTQSRKL-CIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 586 ~~~---~~~----~~~~~~~~~D~~~~~~~L~~~-~~~d~~~i-~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
-.. .+. .....-++.|.+.+-..|++. |. +|+ +|+|+||||+.++..+.++||+...+|..+.
T Consensus 97 s~~p~~~~~~~yg~~FP~~ti~D~v~aq~~ll~~LGI---~~l~aViG~SmGGmqal~wa~~~Pd~v~~li~Ia~ 168 (376)
T d2vata1 97 SPDPDAEGQRPYGAKFPRTTIRDDVRIHRQVLDRLGV---RQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIAT 168 (376)
T ss_dssp SBCTTTC--CBCGGGCCCCCHHHHHHHHHHHHHHHTC---CCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESC
T ss_pred CCCcccccCCcccccCCcchhHHHHHHHHHHHHHhCc---ceEEEeecccHHHHHHHHHHHhchHHHhhhccccc
Confidence 100 000 123345789999987777765 43 466 7999999999999999999999988877654
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=98.60 E-value=1.4e-08 Score=112.26 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=89.8
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCcc---CCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhccc
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNIS---VTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGA 591 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~---~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~ 591 (789)
+.|- +.+-|+.|+. .+++.||+|++|||.... ....+.. ..++.+.+++|+.+|||-|- +|--......
T Consensus 78 sEDC---L~lni~~P~~--~~~~lPV~v~ihGG~~~~g~~~~~~~~~--~~~~~~~~vVvV~~nYRlg~-~GFl~~~~~~ 149 (483)
T d1qe3a_ 78 SEDC---LYVNVFAPDT--PSQNLPVMVWIHGGAFYLGAGSEPLYDG--SKLAAQGEVIVVTLNYRLGP-FGFLHLSSFD 149 (483)
T ss_dssp CSCC---CEEEEEEECS--SCCSEEEEEEECCSTTTSCCTTSGGGCC--HHHHHHHTCEEEEECCCCHH-HHSCCCTTTC
T ss_pred CCcC---CEEEEEECCC--CCCCCceEEEEeecccccCCcccccccc--ccccccCceEEEeecccccc-hhhccccccc
Confidence 4565 4556677875 357899999999994332 2233332 34555568999999999642 1100001111
Q ss_pred -ccCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC--CCceeEEEecCCccc
Q 003878 592 -LAKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQR--PDLFGCALAHVGVMD 654 (789)
Q Consensus 592 -~~~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--pd~f~a~v~~~p~~d 654 (789)
...+...+.|.+.|++|+.++ ---||++|.|+|+|+||..+...+... ..+|+.+|+++|...
T Consensus 150 ~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~~ 218 (483)
T d1qe3a_ 150 EAYSDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASR 218 (483)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHHcCCCcccceeeccccccchhhhhhcccccCCcceeeccccCCcc
Confidence 122345589999999999876 124999999999999999998887642 249999999988643
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.60 E-value=2.8e-06 Score=87.69 Aligned_cols=160 Identities=9% Similarity=-0.019 Sum_probs=96.1
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCCEEEEEECCC
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKD 380 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~~l~~~tn~~ 380 (789)
+..+.|++||++|+....... ..+.+++.+++. ....+........ ..|+++++.+++....
T Consensus 118 v~~v~~s~~~~~l~~~~~~~~---~~~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~- 180 (325)
T d1pgua1 118 ISDISWDFEGRRLCVVGEGRD---NFGVFISWDSGN-------------SLGEVSGHSQRINACHLKQSRPMRSMTVGD- 180 (325)
T ss_dssp EEEEEECTTSSEEEEEECCSS---CSEEEEETTTCC-------------EEEECCSCSSCEEEEEECSSSSCEEEEEET-
T ss_pred EEEEEECCCCCccceeecccc---ceEEEEeecccc-------------cceeeeecccccccccccccccceEEEeec-
Confidence 567899999999988764332 235566666531 1222221111111 3488888776654433
Q ss_pred CCCceEEEEECCCCCCeEEecc-CCCCceeeeEEEecC-CEEEEEEEeCCeEEEEEEECCCCceeeecccCCee----EE
Q 003878 381 APKYKIIRVDLKEPNDWFEVIP-EAERDVLESATAVNL-NQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGS----VN 454 (789)
Q Consensus 381 ~~~~~L~~~dl~~~~~~~~l~~-~~~~~~i~~v~~~~~-~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~----v~ 454 (789)
+..+..+++...+....+.. ......+..++++++ +.++++...++ .|.+||+.+++.+..+..+... +.
T Consensus 181 --d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~--~i~iwd~~~~~~~~~l~~~~~~v~~~~~ 256 (325)
T d1pgua1 181 --DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR--KISCFDGKSGEFLKYIEDDQEPVQGGIF 256 (325)
T ss_dssp --TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC--CEEEEETTTCCEEEECCBTTBCCCSCEE
T ss_pred --ccccccccccccccceecccccCCCCccEEeeeccccceecccccccc--ceeeeeecccccccccccccccccccee
Confidence 35788888876542222222 222355788888874 56777787776 6888999988876666544222 22
Q ss_pred EeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 455 AISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 455 ~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
.+.+ +|++.++ +.+ .-..+..||+.+++
T Consensus 257 s~~~-~dg~~l~-s~s---~D~~i~iwd~~~~~ 284 (325)
T d1pgua1 257 ALSW-LDSQKFA-TVG---ADATIRVWDVTTSK 284 (325)
T ss_dssp EEEE-SSSSEEE-EEE---TTSEEEEEETTTTE
T ss_pred eeec-cCCCEEE-EEe---CCCeEEEEECCCCC
Confidence 2332 5676554 332 34679999998884
|
| >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]
Probab=98.59 E-value=4.8e-08 Score=109.56 Aligned_cols=225 Identities=15% Similarity=0.151 Sum_probs=128.4
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCC-CCCC--HHH-HHHHHcCCeEEEEEeecCCC-CCC--hhHH
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVT-PSFS--VSR-TILMRHLGAVFCIANIRGGG-EYG--EEWH 587 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~-~~~~--~~~-~~~l~~~G~~v~~~~~RG~g-~~g--~~~~ 587 (789)
+.|- +.+-|+.|++...+++.||||++|||.-.... ..+. ... ..++...+.+|+.+|||-|- +|- .+..
T Consensus 102 sEDC---L~LnI~~P~~~~~~~~lPV~V~ihGG~f~~G~~~~~~~~~~~~~~~~~~~~vIvVt~nYRlg~~Gfl~~~~~~ 178 (544)
T d1thga_ 102 NEDC---LYLNVFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLGGDAIT 178 (544)
T ss_dssp CSCC---CEEEEEEETTCCTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHH
T ss_pred CCcC---CEEEEEECCCCCCCCCCCEEEEeccCCCccCCCccCCcchhhhhhhhccCCeEEEecccccccccccCCchhh
Confidence 4455 45566679876667889999999998433222 1222 111 33445688999999999542 111 1111
Q ss_pred hcccccCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHh--------CCCceeEEEecCCccccc
Q 003878 588 KGGALAKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQ--------RPDLFGCALAHVGVMDML 656 (789)
Q Consensus 588 ~~~~~~~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--------~pd~f~a~v~~~p~~d~~ 656 (789)
. ...+...+.|.+.|++|+.++ ---||++|.|+|+|+||..+...+.- ...+|+.+|+++|..-..
T Consensus 179 ~---~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~sp~~~~~~~s~gLF~raI~qSG~~~~~ 255 (544)
T d1thga_ 179 A---EGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGGPLPY 255 (544)
T ss_dssp H---HTCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCCCCCC
T ss_pred c---cccccHHHHHhhhhhhhhhhhhcccccCCCceEeeeeccchHHHHHHHhCcCCCcccchhhhhccccccccccccc
Confidence 1 112345689999999999876 23499999999999999998887763 124999999998743211
Q ss_pred ccccccCCc----cchhhcCCCC---cHHHHHHHHhcCcccCCCC--------CCCCCCCCCCCCCeEEEEecCCCCCCC
Q 003878 657 RYHKFTIGH----AWVSDFGCSE---EEEEFYWLIKYSPLHNVRR--------PWEQNPDKPFQYPSTLLLTADHDDRVV 721 (789)
Q Consensus 657 ~~~~~~~~~----~~~~e~g~p~---~~~~~~~l~~~sP~~~v~~--------~~~~~~~~~~~~pp~Li~~g~~D~~V~ 721 (789)
......... ......|++. ..+..+.|++.++-.-++. .... ......+.|+ -|..+-
T Consensus 256 ~~~~~~~~~~~~~~la~~lgc~~~~~~~~~l~cLR~~~~~~L~~a~~~~~~~~~~~~-~~~~~~f~Pv------vDg~~l 328 (544)
T d1thga_ 256 HDSSSVGPDISYNRFAQYAGCDTSASANDTLECLRSKSSSVLHDAQNSYDLKDLFGL-LPQFLGFGPR------PDGNII 328 (544)
T ss_dssp SSSCCSSSSCHHHHHHHHHTCCTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHSTTT-SCGGGTSCCC------CCSSSS
T ss_pred ccccccchhHHHHHHHHHhCCCcccchhhhhhhhccCCHHHHHHHHHhhcccccccc-CCcccccccc------cCCcee
Confidence 111100011 1223346652 2344566666554211110 0000 0000013344 255555
Q ss_pred cHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCCC
Q 003878 722 PLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGVG 762 (789)
Q Consensus 722 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~~ 762 (789)
+.++.++.+ .. ...++|+.+-...++|..+.
T Consensus 329 p~~p~~~~~---~g-------~~~~vPlliG~t~~Eg~~f~ 359 (544)
T d1thga_ 329 PDAAYELFR---SG-------RYAKVPYISGNQEDEGTAFA 359 (544)
T ss_dssp CSCHHHHHH---TT-------CSCCCCEEEEEETBTTTTTG
T ss_pred ecCHHHhhc---cC-------Cceecceeeeccccchhhhh
Confidence 566655433 22 22268999989999988753
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.58 E-value=1.2e-05 Score=81.97 Aligned_cols=149 Identities=11% Similarity=0.086 Sum_probs=83.5
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCC
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDA 381 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~ 381 (789)
.....++|++++++....+ ..|.++++.++. ....+.. .......+..+++.|+..+
T Consensus 204 ~~~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~-------------~~~~~~~-h~~~v~~~~~~~~~l~~~~---- 260 (355)
T d1nexb2 204 IYSTIYDHERKRCISASMD-----TTIRIWDLENGE-------------LMYTLQG-HTALVGLLRLSDKFLVSAA---- 260 (355)
T ss_dssp EEEEEEETTTTEEEEEETT-----SCEEEEETTTCC-------------EEEEECC-CSSCCCEEEECSSEEEEEC----
T ss_pred cccccccccceeeeccccc-----ceEEeeeccccc-------------ccccccc-ccccccccccccceeeeee----
Confidence 4567899999999876643 348888988742 1222221 1112222344566665432
Q ss_pred CCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeee-cccCCeeEEEeeccc
Q 003878 382 PKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQ-LPIEIGSVNAISARR 460 (789)
Q Consensus 382 ~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~-l~~~~~~v~~~s~s~ 460 (789)
.++.|..+|+.+.. +.+..+... ...-..+.+++.+++... ++ .|++||+++|+.+.. +..+...|..+++++
T Consensus 261 ~dg~i~iwd~~~~~--~~~~~~~~~-~~~~~~~~~~~~~l~~g~-d~--~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~ 334 (355)
T d1nexb2 261 ADGSIRGWDANDYS--RKFSYHHTN-LSAITTFYVSDNILVSGS-EN--QFNIYNLRSGKLVHANILKDADQIWSVNFKG 334 (355)
T ss_dssp TTSEEEEEETTTCC--EEEEEECTT-CCCCCEEEECSSEEEEEE-TT--EEEEEETTTCCBCCSCTTTTCSEEEEEEEET
T ss_pred cccccccccccccc--eecccccCC-ceEEEEEcCCCCEEEEEe-CC--EEEEEECCCCCEEEEEecCCCCCEEEEEEcC
Confidence 34679999998775 333333321 111122334466776665 44 699999998987543 333456677777765
Q ss_pred CCcEEEEEEcCCCCCcEEEEEE
Q 003878 461 EDSVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 461 d~~~l~~~~ss~~~P~~ly~~d 482 (789)
+ .++++.+ ...--.++.+|
T Consensus 335 ~--~~~~~~s-~dg~~~l~~~d 353 (355)
T d1nexb2 335 K--TLVAAVE-KDGQSFLEILD 353 (355)
T ss_dssp T--EEEEEEE-SSSCEEEEEEE
T ss_pred C--eEEEEEE-CCCcEEEEEEe
Confidence 4 4544433 22223455555
|
| >d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Surfactin synthetase, SrfA species: Bacillus subtilis [TaxId: 1423]
Probab=98.57 E-value=4e-08 Score=96.19 Aligned_cols=81 Identities=10% Similarity=0.034 Sum_probs=58.0
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
++.|.|+++||..+.. ..|.. +...|. +|.|..++++|.++ ..+|+.+.+..+.
T Consensus 15 ~~~~~l~~lhg~~g~~--~~~~~-la~~L~--~~~v~~~~~~g~~~----------------~a~~~~~~i~~~~----- 68 (230)
T d1jmkc_ 15 DQEQIIFAFPPVLGYG--LMYQN-LSSRLP--SYKLCAFDFIEEED----------------RLDRYADLIQKLQ----- 68 (230)
T ss_dssp TCSEEEEEECCTTCCG--GGGHH-HHHHCT--TEEEEEECCCCSTT----------------HHHHHHHHHHHHC-----
T ss_pred CCCCeEEEEcCCCCCH--HHHHH-HHHHCC--CCEEeccCcCCHHH----------------HHHHHHHHHHHhC-----
Confidence 4568999999988764 33443 455564 79999999987542 3456655554432
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCCc
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPDL 642 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd~ 642 (789)
...++.++|||+||.++..++.+.|++
T Consensus 69 ~~~~~~lvGhS~GG~vA~~~A~~~~~~ 95 (230)
T d1jmkc_ 69 PEGPLTLFGYSAGCSLAFEAAKKLEGQ 95 (230)
T ss_dssp CSSCEEEEEETHHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEeeccChHHHHHHHHhhhhh
Confidence 235799999999999999998876654
|
| >d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.53 E-value=2.8e-08 Score=111.50 Aligned_cols=132 Identities=21% Similarity=0.205 Sum_probs=89.4
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCC---CccCCCCCCHHHHHHHHcCCeEEEEEeecCCC-CCChhHHhcc
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF---NISVTPSFSVSRTILMRHLGAVFCIANIRGGG-EYGEEWHKGG 590 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~---~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g-~~g~~~~~~~ 590 (789)
+.|- +.+-|+.|+. ...++.||||++|||. |+...+.+... .+.++.+.+|+.+|||-|- +|-. ....
T Consensus 93 sEDC---L~LnI~~P~~-~~~~~lPV~v~ihGG~~~~gs~~~~~~~~~--~~~~~~~vvvVt~nYRlg~~Gfl~--~~~~ 164 (542)
T d2ha2a1 93 SEDC---LYLNVWTPYP-RPASPTPVLIWIYGGGFYSGAASLDVYDGR--FLAQVEGAVLVSMNYRVGTFGFLA--LPGS 164 (542)
T ss_dssp ESCC---CEEEEEEESS-CCSSCEEEEEEECCSTTTCCCTTSGGGCTH--HHHHHHCCEEEEECCCCHHHHHCC--CTTC
T ss_pred CCcC---CEEEEEecCC-CCCCCCcEEEEEEECccccccCcccccCch--hhhhhccceeEeeeeeccceeeec--cccc
Confidence 4566 4445566764 2357899999999984 33333444442 3444579999999999531 1110 0011
Q ss_pred cccCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC--CCceeEEEecCCccc
Q 003878 591 ALAKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQR--PDLFGCALAHVGVMD 654 (789)
Q Consensus 591 ~~~~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--pd~f~a~v~~~p~~d 654 (789)
....+...+.|.+.|++|+.++ ---||++|.|+|+|+||..+..++... ..+|..+|++++...
T Consensus 165 ~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTi~G~SAGa~sv~~ll~sp~~~~LF~~aI~~SG~~~ 233 (542)
T d2ha2a1 165 REAPGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTPN 233 (542)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCSS
T ss_pred ccCCCcCCcccHHHHHHHHHHHHHHhhcCccccccccccccccchhhhhhhhhhhHHhhhheeeccccC
Confidence 1223344689999999999876 224999999999999999998877652 249999999987543
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Probab=98.53 E-value=4.1e-07 Score=93.38 Aligned_cols=103 Identities=19% Similarity=0.069 Sum_probs=72.5
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGYT 615 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~~ 615 (789)
.+.| ||++||.........|. .+..+|.++||.|+.+|++|.|.- ......+++.++++++.+. +
T Consensus 30 ~~~P-VvlvHG~~~~~~~~~~~-~~~~~L~~~Gy~v~~~d~~g~g~~-----------d~~~sae~la~~i~~v~~~--~ 94 (317)
T d1tcaa_ 30 VSKP-ILLVPGTGTTGPQSFDS-NWIPLSTQLGYTPCWISPPPFMLN-----------DTQVNTEYMVNAITALYAG--S 94 (317)
T ss_dssp CSSE-EEEECCTTCCHHHHHTT-THHHHHHTTTCEEEEECCTTTTCS-----------CHHHHHHHHHHHHHHHHHH--T
T ss_pred CCCc-EEEECCCCCCCcchhHH-HHHHHHHhCCCeEEEecCCCCCCC-----------chHhHHHHHHHHHHHHHHh--c
Confidence 4566 46689954433322233 245677779999999999985521 1123456788888888776 2
Q ss_pred CCCcEEEEeeChHHHHHHHHHHhCCC---ceeEEEecCCcc
Q 003878 616 QSRKLCIEGGSNGGLLVGACINQRPD---LFGCALAHVGVM 653 (789)
Q Consensus 616 d~~~i~i~G~S~GG~l~~~~~~~~pd---~f~a~v~~~p~~ 653 (789)
..++|.|+|||+||+++.+++.++|+ +.+.+|...|..
T Consensus 95 g~~kV~lVGhS~GG~~a~~~l~~~p~~~~~V~~~v~i~~~~ 135 (317)
T d1tcaa_ 95 GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDY 135 (317)
T ss_dssp TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCT
T ss_pred cCCceEEEEeCchHHHHHHHHHHCCCcchheeEEEEeCCCC
Confidence 34689999999999999999999885 577777766643
|
| >d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Pacific electric ray (Torpedo californica) [TaxId: 7787]
Probab=98.49 E-value=3.8e-08 Score=110.14 Aligned_cols=131 Identities=22% Similarity=0.177 Sum_probs=89.4
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCC---CccCCCCCCHHHHHHHHcCCeEEEEEeecCCC-CCChhHHhcc
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGF---NISVTPSFSVSRTILMRHLGAVFCIANIRGGG-EYGEEWHKGG 590 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~---~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g-~~g~~~~~~~ 590 (789)
+.|- .. +-|+.|+.. .++.||+|++|||. |......+.. ..++.+++.+|+.+|||-|- +|- .....
T Consensus 88 sEDC-L~--LnI~~P~~~--~~~lPV~v~ihGG~~~~g~~~~~~~~~--~~~~~~~~vvvVt~nYRlg~~GFl--~~~~~ 158 (532)
T d1ea5a_ 88 SEDC-LY--LNIWVPSPR--PKSTTVMVWIYGGGFYSGSSTLDVYNG--KYLAYTEEVVLVSLSYRVGAFGFL--ALHGS 158 (532)
T ss_dssp CSCC-CE--EEEEECSSC--CSSEEEEEEECCSTTTCCCTTCGGGCT--HHHHHHHTCEEEECCCCCHHHHHC--CCTTC
T ss_pred CccC-CE--EEEEeCCCC--CCCCcEEEEEEcCCcccccCCccccCc--chhhcccCccEEEEeecccccccc--ccccc
Confidence 4566 44 455678753 46799999999983 3333344443 23455589999999999642 111 00111
Q ss_pred cccCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHhC--CCceeEEEecCCccc
Q 003878 591 ALAKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQR--PDLFGCALAHVGVMD 654 (789)
Q Consensus 591 ~~~~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~~--pd~f~a~v~~~p~~d 654 (789)
....+...+.|.+.|++|+.++ ---||++|.|+|+|+||..+...+... ..+|..+|++++...
T Consensus 159 ~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lF~~aI~~Sg~~~ 227 (532)
T d1ea5a_ 159 QEAPGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPN 227 (532)
T ss_dssp SSSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCTT
T ss_pred cCCCCcccchhHHHHHHHHHHHHHhhcCCccceEeeeecccccchhhhccCccchhhhhhheeeccccc
Confidence 1223344789999999999876 224999999999999999988877641 248999999887543
|
| >d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Butyryl cholinesterase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=5.9e-08 Score=108.34 Aligned_cols=130 Identities=18% Similarity=0.152 Sum_probs=87.5
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCC---ccCCCCCCHHHHHHHHcCCeEEEEEeecCCC-CCChhHHhcc
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFN---ISVTPSFSVSRTILMRHLGAVFCIANIRGGG-EYGEEWHKGG 590 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~---~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g-~~g~~~~~~~ 590 (789)
+.|- +.+-|+.|.. ..++.||||++|||.. +.....+.. ..+.++.+.+|+.+|||-|- +|-. ....
T Consensus 86 sEDC---L~lnI~~P~~--~~~~~PV~v~ihGG~~~~gs~~~~~~~~--~~~~~~~~vVvVt~nYRlg~~Gfl~--~~~~ 156 (526)
T d1p0ia_ 86 SEDC---LYLNVWIPAP--KPKNATVLIWIYGGGFQTGTSSLHVYDG--KFLARVERVIVVSMNYRVGALGFLA--LPGN 156 (526)
T ss_dssp CSCC---CEEEEEEESS--CCSSEEEEEEECCSTTTSCCTTCGGGCT--HHHHHHHCCEEEEECCCCHHHHHCC--CTTC
T ss_pred CCcC---CEEEEEeCCC--CCCCCceEEEEECCCcccccCcccccCc--cccccccceeEEecccccccccccC--CCCc
Confidence 4566 4455567875 3467899999999843 333333343 23445579999999999541 1110 0011
Q ss_pred cccCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHh--CCCceeEEEecCCcc
Q 003878 591 ALAKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVM 653 (789)
Q Consensus 591 ~~~~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~pd~f~a~v~~~p~~ 653 (789)
....+...+.|.+.|++|+.++ ---||++|.|+|+|+||..+...+.. ...+|+.+|++.+-.
T Consensus 157 ~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lf~~aI~~Sg~~ 224 (526)
T d1p0ia_ 157 PEAPGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 224 (526)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred ccccccccccchhhhhhhHHHHHHHhhcCchheeehhhccccceeeccccCCcchhhhhhhhcccccc
Confidence 1223445789999999999876 22499999999999999998876653 234899999887654
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.47 E-value=7.1e-06 Score=82.69 Aligned_cols=236 Identities=13% Similarity=0.081 Sum_probs=125.9
Q ss_pred CcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccc
Q 003878 130 GTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLR 209 (789)
Q Consensus 130 ~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 209 (789)
+...+..+.++|||+.++.+ .. ..+++|++............. .+ .+. ..+....|+++
T Consensus 54 h~~~v~~v~~~~~g~~~~~~--~d----~~v~~~~~~~~~~~~~~~~~~----~~-~~~----~~~~~~s~~g~------ 112 (299)
T d1nr0a2 54 HATMITGIKTTSKGDLFTVS--WD----DHLKVVPAGGSGVDSSKAVAN----KL-SSQ----PLGLAVSADGD------ 112 (299)
T ss_dssp CSSCEEEEEECTTSCEEEEE--TT----TEEEEECSSSSSSCTTSCCEE----EC-SSC----EEEEEECTTSS------
T ss_pred CCCcEEEEEeeccceeeccc--ce----eeEEEeccCCccccccccccc----cc-ccc----ccccccccccc------
Confidence 44567889999999876532 22 368899987653221100000 00 000 00111224443
Q ss_pred cceeeEEEeeeccccceeeeeeec------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECC
Q 003878 210 GIFFFFYLFSLVKSTIYSFWSVVS------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLG 283 (789)
Q Consensus 210 ~~~~~~~~~~s~~~g~~~l~~~~~------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg 283 (789)
+++. ..++...+|.... ......++|+||++.|+....+ ..+.++++.
T Consensus 113 ------~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-------------------g~i~~~d~~ 166 (299)
T d1nr0a2 113 ------IAVA-ACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQD-------------------SKVHVYKLS 166 (299)
T ss_dssp ------CEEE-EESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETT-------------------SEEEEEEEE
T ss_pred ------cccc-ccccccccccccccccccccccccccccccccccccccccc-------------------ccccccccc
Confidence 1221 2223344554221 3344678999999988865432 357788876
Q ss_pred CCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee
Q 003878 284 TKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY 363 (789)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~ 363 (789)
+.......... +...+..+.++|+|++|+....+ ..++++++.++.. ......+........
T Consensus 167 ~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~~----------~~~~~~~~~h~~~v~ 228 (299)
T d1nr0a2 167 GASVSEVKTIV---HPAEITSVAFSNNGAFLVATDQS-----RKVIPYSVANNFE----------LAHTNSWTFHTAKVA 228 (299)
T ss_dssp TTEEEEEEEEE---CSSCEEEEEECTTSSEEEEEETT-----SCEEEEEGGGTTE----------ESCCCCCCCCSSCEE
T ss_pred ccccccccccc---ccccccccccccccccccccccc-----ccccccccccccc----------ccccccccccccccc
Confidence 54322222222 23346688999999998876532 3488889876420 000111111111122
Q ss_pred -EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEecc-CCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEEC
Q 003878 364 -EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIP-EAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 364 -~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~-~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl 437 (789)
..|+|+|+.|+..+. ++.|..+|+.++.....+.. ......+..+.+.+ +..+++...|+ .|.+||+
T Consensus 229 ~l~~s~~~~~l~sgs~----dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~s~s~D~--~i~iWdl 297 (299)
T d1nr0a2 229 CVSWSPDNVRLATGSL----DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ETTIVSAGQDS--NIKFWNV 297 (299)
T ss_dssp EEEECTTSSEEEEEET----TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE-TTEEEEEETTS--CEEEEEC
T ss_pred cccccccccceEEEcC----CCEEEEEECCCCCcceEEEecCCCCCcEEEEEECC-CCEEEEEeCCC--EEEEEec
Confidence 248999998876443 35689999987652222222 22224456666555 45666677776 6888886
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=9.2e-06 Score=82.14 Aligned_cols=272 Identities=6% Similarity=-0.017 Sum_probs=138.3
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
-.|.+++|||||++||-+. ...+|+|||+.++.......... .|... ..+..+.|++.
T Consensus 12 d~I~~l~fsp~~~~L~s~s-----~Dg~v~iwd~~~~~~~~~~~~~~----~h~~~-----V~~v~f~~~~~-------- 69 (342)
T d1yfqa_ 12 DYISDIKIIPSKSLLLITS-----WDGSLTVYKFDIQAKNVDLLQSL----RYKHP-----LLCCNFIDNTD-------- 69 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEE-----TTSEEEEEEEETTTTEEEEEEEE----ECSSC-----EEEEEEEESSS--------
T ss_pred CCEEEEEEeCCCCEEEEEE-----CCCeEEEEEccCCCcceEEEEec----CCCCC-----EEEEEEeCCCC--------
Confidence 3578999999999998543 23489999998764321111000 01000 11111223321
Q ss_pred eeeEEEeeeccccceeeeeeec-----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEE
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVS-----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYH 280 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~-----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (789)
.+++++..+|.-.+|.+.. ........+.+++..++....+ ..+.++
T Consensus 70 ---~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~w 127 (342)
T d1yfqa_ 70 ---LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD-------------------GLIEVI 127 (342)
T ss_dssp ---EEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETT-------------------SEEEEE
T ss_pred ---CEEEEcccccceeeeecccccccccccccccccccccccccccccccccccc-------------------ccccee
Confidence 4677888999999998765 0111233455566555544322 245666
Q ss_pred ECCCCCCCcEEEEecCCC--CeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc
Q 003878 281 FLGTKQSEDILCWKDPEH--PKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG 358 (789)
Q Consensus 281 ~lg~~~~~~~~~~~~~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~ 358 (789)
++.+.............. ........+++++..++....+ ..+.++++...... .........
T Consensus 128 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~~~~~~~~~~~----------~~~~~~~~~ 192 (342)
T d1yfqa_ 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNN-----SQVQWFRLPLCEDD----------NGTIEESGL 192 (342)
T ss_dssp CHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEEST-----TEEEEEESSCCTTC----------CCEEEECSC
T ss_pred eccccccceeeecccccccccceeeeeeeeccCCceeeecCC-----CcEEEEecccCccc----------ceeeeeccc
Confidence 654333322222222111 1111234667888888776543 45778888764211 001111110
Q ss_pred -ccceeEEE-ecCCCEEEEEECCCCCCceEEEEECCCCC------CeEEe------ccC-CCCceeeeEEEecCCEEEEE
Q 003878 359 -FDAQYEVI-ANDDTVFTFLTNKDAPKYKIIRVDLKEPN------DWFEV------IPE-AERDVLESATAVNLNQMIVS 423 (789)
Q Consensus 359 -~~~~~~~~-s~dG~~l~~~tn~~~~~~~L~~~dl~~~~------~~~~l------~~~-~~~~~i~~v~~~~~~~lv~~ 423 (789)
.......+ ..++..++..+. ++++..++..... ..... ... .....+..+++++++.++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~s~----dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~las 268 (342)
T d1yfqa_ 193 KYQIRDVALLPKEQEGYACSSI----DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT 268 (342)
T ss_dssp SSCEEEEEECSGGGCEEEEEET----TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEE
T ss_pred ccceeeeEeecCCCCEEEeecC----CCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEE
Confidence 00011112 234444443332 2344444443221 00111 001 11123567889987788888
Q ss_pred EEeCCeEEEEEEECCCCceeeecccC-CeeEEEeecccCCcEEEEEEc
Q 003878 424 YLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISARREDSVVFISFT 470 (789)
Q Consensus 424 ~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s~d~~~l~~~~s 470 (789)
...|| .|++||+++++.+..+... ... .++++++++.+++..+
T Consensus 269 g~~Dg--~v~vWD~~~~~~l~~~~~~~~~~--~~~~s~~~~~l~~a~s 312 (342)
T d1yfqa_ 269 AGSDG--IISCWNLQTRKKIKNFAKFNEDS--VVKIACSDNILCLATS 312 (342)
T ss_dssp EETTS--CEEEEETTTTEEEEECCCCSSSE--EEEEEECSSEEEEEEE
T ss_pred ECCCC--EEEEEECCCCcEEEEecCCCCCE--EEEEEeCCCEEEEEEc
Confidence 88887 7899999988766655432 333 3456678887776544
|
| >d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Chromobacterium viscosum [TaxId: 42739]
Probab=98.41 E-value=3.8e-07 Score=94.65 Aligned_cols=102 Identities=17% Similarity=0.131 Sum_probs=73.8
Q ss_pred CCccEEEEEcCCCCccCCC----CCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHH
Q 003878 536 GSHPCLLYGYGGFNISVTP----SFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLIS 611 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~----~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~ 611 (789)
.++|+| ++||.++..... .|.. ....|.++||.|+++|+||.|... ......+++.+.++.+++
T Consensus 7 ~k~Pvv-lvHG~~g~~~~~~~~~~~~~-~~~~L~~~G~~V~~~~~~g~g~s~----------~~~~~~~~l~~~i~~~~~ 74 (319)
T d1cvla_ 7 TRYPVI-LVHGLAGTDKFANVVDYWYG-IQSDLQSHGAKVYVANLSGFQSDD----------GPNGRGEQLLAYVKQVLA 74 (319)
T ss_dssp CSSCEE-EECCTTBSSEETTTEESSTT-HHHHHHHTTCCEEECCCBCSSCTT----------STTSHHHHHHHHHHHHHH
T ss_pred CCCCEE-EECCCCCCcchhhhhhhHHH-HHHHHHHCCCEEEEecCCCCCCCC----------CCcccHHHHHHHHHHHHH
Confidence 467865 579976654322 2443 445666699999999999865421 112234667676766665
Q ss_pred cCCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 612 AGYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 612 ~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
. ...++|.++|||+||+++..++.++|++++.+|...+
T Consensus 75 ~--~~~~~v~lvGhS~GG~~~~~~~~~~p~~v~~vv~i~~ 112 (319)
T d1cvla_ 75 A--TGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGT 112 (319)
T ss_dssp H--HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred H--hCCCCEEEEeccccHHHHHHHHHHCccccceEEEECC
Confidence 4 2457999999999999999999999999999998765
|
| >d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.38 E-value=3.4e-07 Score=103.09 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=82.0
Q ss_pred CCCCccEEEEEcCCC---CccCCCCCCHHHHHHHHcCCeEEEEEeecCCC-CCC---hhHHhc-ccccCCcchHHHHHHH
Q 003878 534 LDGSHPCLLYGYGGF---NISVTPSFSVSRTILMRHLGAVFCIANIRGGG-EYG---EEWHKG-GALAKKQNCFDDFISA 605 (789)
Q Consensus 534 ~~~~~P~ll~~hGg~---~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g-~~g---~~~~~~-~~~~~~~~~~~D~~~~ 605 (789)
..++.||+||+|||. |+...+.+... .+.++.+.+|+.+|||-|- +|- ...... .....+...+.|.+.|
T Consensus 135 ~~~~lPV~V~ihGG~f~~Gs~~~~~~~~~--~l~~~~~vVvVtinYRlg~fGFl~~~~~~~~~~~~~~~gN~Gl~Dq~~A 212 (571)
T d1dx4a_ 135 TTNGLPILIWIYGGGFMTGSATLDIYNAD--IMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALA 212 (571)
T ss_dssp CCSSEEEEEEECCSTTTCCCTTCGGGCCH--HHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCccCCCCcccccchh--hhhhcCCeeEEeecceeccccccccccccccccccCCCCcccchHHHHH
Confidence 357899999999983 44444555543 3444456999999999642 111 000001 1112334568999999
Q ss_pred HHHHHHcC---CCCCCcEEEEeeChHHHHHHHHHHhC--CCceeEEEecCCccc
Q 003878 606 SEYLISAG---YTQSRKLCIEGGSNGGLLVGACINQR--PDLFGCALAHVGVMD 654 (789)
Q Consensus 606 ~~~L~~~~---~~d~~~i~i~G~S~GG~l~~~~~~~~--pd~f~a~v~~~p~~d 654 (789)
++|+.++= --||+||.|+|+|+||..+...+... ..+|+.+|++++...
T Consensus 213 L~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~ll~sp~~~~lf~~aI~~Sg~~~ 266 (571)
T d1dx4a_ 213 IRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMN 266 (571)
T ss_dssp HHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCTT
T ss_pred HHHHHHhhhhhccCCCceEeccccCccceeeeeeccccccccccccceeccccc
Confidence 99998871 24999999999999999998777642 248999999887654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=98.36 E-value=6.8e-05 Score=76.08 Aligned_cols=212 Identities=9% Similarity=0.054 Sum_probs=102.1
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+++|||||++||.+... ...|..+++........++..... ......+++||||++|+.
T Consensus 39 v~~la~spDG~~L~v~~~~------------------d~~i~~~~i~~~~~~~~~~~~~~~-~~~p~~l~~spDg~~l~v 99 (333)
T d1ri6a_ 39 VQPMVVSPDKRYLYVGVRP------------------EFRVLAYRIAPDDGALTFAAESAL-PGSLTHISTDHQGQFVFV 99 (333)
T ss_dssp CCCEEECTTSSEEEEEETT------------------TTEEEEEEECTTTCCEEEEEEEEC-SSCCSEEEECTTSSEEEE
T ss_pred EeEEEEeCCCCEEEEEECC------------------CCeEEEEEEeCCCCcEEEeeeccc-CCCceEEEEcCCCCEEee
Confidence 4789999999999876432 235777777655433333322211 111235889999999987
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc-ccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
.... ...+.+++.+... .......... .......+++|++.++..... ...|..++.....
T Consensus 100 ~~~~----~~~v~~~~~~~~~-----------~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~---~~~i~~~~~~~~~ 161 (333)
T d1ri6a_ 100 GSYN----AGNVSVTRLEDGL-----------PVGVVDVVEGLDGCHSANISPDNRTLWVPALK---QDRICLFTVSDDG 161 (333)
T ss_dssp EETT----TTEEEEEEEETTE-----------EEEEEEEECCCTTBCCCEECTTSSEEEEEEGG---GTEEEEEEECTTS
T ss_pred cccC----CCceeeecccccc-----------ceecccccCCCccceEEEeeecceeeeccccc---cceeeEEEeccCC
Confidence 6532 2335555444321 0001111111 111223589999988766543 2456666654432
Q ss_pred CeE----EeccCCCCceeeeEEEecCCE-EEEEEEeCCeEEEEEEECCCCce--eeec---cc---CCeeEEEeecccCC
Q 003878 396 DWF----EVIPEAERDVLESATAVNLNQ-MIVSYLSDVKYVLQIRDLKNGSL--LHQL---PI---EIGSVNAISARRED 462 (789)
Q Consensus 396 ~~~----~l~~~~~~~~i~~v~~~~~~~-lv~~~~~~g~~~L~~~dl~tG~~--~~~l---~~---~~~~v~~~s~s~d~ 462 (789)
... .............+.+++++. ++......+...++.++...... ...+ .. .......+.+++|+
T Consensus 162 ~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~ 241 (333)
T d1ri6a_ 162 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 241 (333)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred cceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEeccc
Confidence 111 111111123345667776433 33333333333444433332211 0111 11 12233456678899
Q ss_pred cEEEEEEcCCCCCcEEEEEECCCC
Q 003878 463 SVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 463 ~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
+.+++.... .....++..+..++
T Consensus 242 ~~~~~~~~~-~~~~~~~~~~~~~~ 264 (333)
T d1ri6a_ 242 RHLYACDRT-ASLITVFSVSEDGS 264 (333)
T ss_dssp SEEEEEETT-TTEEEEEEECTTSC
T ss_pred Cceeeeccc-CCeEEEEEEcCCCC
Confidence 877655432 23334444444433
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.36 E-value=0.0001 Score=75.61 Aligned_cols=209 Identities=11% Similarity=0.075 Sum_probs=116.4
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.++++++||+ |+++.... ......+...+..+... ..+.+..........+.+++||+ ++++
T Consensus 85 ~gla~~~dG~-l~va~~~~--------------~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~nd~~~d~~G~-l~vt 146 (319)
T d2dg1a1 85 AAIKIHKDGR-LFVCYLGD--------------FKSTGGIFAATENGDNL--QDIIEDLSTAYCIDDMVFDSKGG-FYFT 146 (319)
T ss_dssp EEEEECTTSC-EEEEECTT--------------SSSCCEEEEECTTSCSC--EEEECSSSSCCCEEEEEECTTSC-EEEE
T ss_pred eEEEECCCCC-EEEEecCC--------------CccceeEEEEcCCCcee--eeeccCCCcccCCcceeEEeccc-eeec
Confidence 6789999996 44443211 11123355554443322 22222222122345688999997 5555
Q ss_pred EEcCC--CCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce-eEEEecCCCEEEEEECCCCCCceEEEEECCCC
Q 003878 318 IEENC--DPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEP 394 (789)
Q Consensus 318 ~~~~~--~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~ 394 (789)
..... .....+|.++.+.+. ...+..+.... -..|++||+.||+... ...+|++++++..
T Consensus 147 d~~~~~~~~~g~v~~~~~dg~~--------------~~~~~~~~~~pnGia~s~dg~~lyvad~---~~~~I~~~d~~~~ 209 (319)
T d2dg1a1 147 DFRGYSTNPLGGVYYVSPDFRT--------------VTPIIQNISVANGIALSTDEKVLWVTET---TANRLHRIALEDD 209 (319)
T ss_dssp ECCCBTTBCCEEEEEECTTSCC--------------EEEEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTT
T ss_pred ccccccccCcceeEEEecccce--------------eEEEeeccceeeeeeeccccceEEEecc---cCCceEEEEEcCC
Confidence 43221 124568888766521 22333322211 1348999999987643 3468999987653
Q ss_pred C-Ce----EE-eccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCe------eEEEeecccCC
Q 003878 395 N-DW----FE-VIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIG------SVNAISARRED 462 (789)
Q Consensus 395 ~-~~----~~-l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~------~v~~~s~s~d~ 462 (789)
. .. .. .........-.++++..++.|++....++ .|.+++.+ |+.+.+|.+|.. .+..+.+.++.
T Consensus 210 g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g--~V~~~~p~-G~~l~~i~~P~~~~~~~~~~~~~~~~~~~ 286 (319)
T d2dg1a1 210 GVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG--RVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGT 286 (319)
T ss_dssp SSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT--EEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred CceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCC--EEEEECCC-CcEEEEEeCCCcCCCcCceeeeEEEeCCC
Confidence 2 11 11 11111112345788887778888776665 79999986 887777876621 23345666777
Q ss_pred cEEEEEEcCCCCC--cEEEEEECC
Q 003878 463 SVVFISFTSFLIP--GIVYQCNLK 484 (789)
Q Consensus 463 ~~l~~~~ss~~~P--~~ly~~dl~ 484 (789)
+.++++..+...+ +.+|+++..
T Consensus 287 ~~~~~t~~~~~~~~~g~l~~~~~~ 310 (319)
T d2dg1a1 287 NQLIICSNDIEMGGGSMLYTVNGF 310 (319)
T ss_dssp CEEEEEEECGGGTCCEEEEEEECS
T ss_pred CEEEEEcCCCCcCCceeEEEEeCC
Confidence 7777776544333 456776653
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.33 E-value=0.00023 Score=71.97 Aligned_cols=201 Identities=12% Similarity=0.099 Sum_probs=115.5
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCC-C-CeeEEEEEEecCCcEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPE-H-PKYIFSGHVTEDGQYL 314 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~-~-~~~~~~~~~SpDG~~l 314 (789)
...+++.+||+.++ ... ..+++.+..++.. ..+..... . .....++...|+|+..
T Consensus 61 ~~~i~~~~dg~l~v-a~~--------------------~gl~~~d~~tg~~--~~l~~~~~~~~~~~~nd~~vd~~G~iw 117 (295)
T d2ghsa1 61 GSALAKISDSKQLI-ASD--------------------DGLFLRDTATGVL--TLHAELESDLPGNRSNDGRMHPSGALW 117 (295)
T ss_dssp EEEEEEEETTEEEE-EET--------------------TEEEEEETTTCCE--EEEECSSTTCTTEEEEEEEECTTSCEE
T ss_pred cEEEEEecCCCEEE-EEe--------------------CccEEeeccccee--eEEeeeecCCCcccceeeEECCCCCEE
Confidence 46788888885544 321 2377777766532 22222211 1 2335577899999854
Q ss_pred EEEEEcCCC--CceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-eeEEEecCCCEEEEEECCCCCCceEEEEEC
Q 003878 315 VMCIEENCD--PVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDL 391 (789)
Q Consensus 315 ~~~~~~~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl 391 (789)
+....... ....+|.++ ++. ...+..+... .-..|+++++.+|+.... ..+|+++++
T Consensus 118 -~~~~~~~~~~~~g~l~~~~--~g~--------------~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~---~~~I~~~~~ 177 (295)
T d2ghsa1 118 -IGTMGRKAETGAGSIYHVA--KGK--------------VTKLFADISIPNSICFSPDGTTGYFVDTK---VNRLMRVPL 177 (295)
T ss_dssp -EEEEETTCCTTCEEEEEEE--TTE--------------EEEEEEEESSEEEEEECTTSCEEEEEETT---TCEEEEEEB
T ss_pred -EEeccccccccceeEeeec--CCc--------------EEEEeeccCCcceeeecCCCceEEEeecc---cceeeEeee
Confidence 44432221 123455543 221 2222222221 224589999999886543 467988887
Q ss_pred CCCC-----CeEEec-cCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecc-cCCcE
Q 003878 392 KEPN-----DWFEVI-PEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISAR-REDSV 464 (789)
Q Consensus 392 ~~~~-----~~~~l~-~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s-~d~~~ 464 (789)
+... .....+ .........++.+..++.|++.....+ .|.+++.+ |+.+..+.+|...++.+++- +|.+.
T Consensus 178 d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g--~V~~~dp~-G~~~~~i~lP~~~~T~~~FGG~d~~~ 254 (295)
T d2ghsa1 178 DARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEG--AVDRYDTD-GNHIARYEVPGKQTTCPAFIGPDASR 254 (295)
T ss_dssp CTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTT--EEEEECTT-CCEEEEEECSCSBEEEEEEESTTSCE
T ss_pred cccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCC--ceEEecCC-CcEeeEecCCCCceEEEEEeCCCCCE
Confidence 5321 112211 222234567788877678887666555 79999986 88878888885556566653 67788
Q ss_pred EEEEEcCCCC----------CcEEEEEEC
Q 003878 465 VFISFTSFLI----------PGIVYQCNL 483 (789)
Q Consensus 465 l~~~~ss~~~----------P~~ly~~dl 483 (789)
|+++..+... .+.+|.+++
T Consensus 255 LyvTta~~~~~~~~~~~~p~~G~l~~~~~ 283 (295)
T d2ghsa1 255 LLVTSAREHLDDDAITANPQHGLTFELGI 283 (295)
T ss_dssp EEEEEBCTTCCHHHHHHCTTTTCEEECSS
T ss_pred EEEEECCcCCChhHhccCCCCceEEEEcC
Confidence 9987654332 246776654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.30 E-value=2.5e-05 Score=79.66 Aligned_cols=211 Identities=9% Similarity=0.016 Sum_probs=109.2
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+++|+|||+ ++++.... ..++.+.+.........+...+. .....++.+.+||+.++.
T Consensus 70 ~~gla~~~dG~-l~v~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~n~i~~~~~g~~~v~ 129 (302)
T d2p4oa1 70 VSGLAFTSNGD-LVATGWNA------------------DSIPVVSLVKSDGTVETLLTLPD-AIFLNGITPLSDTQYLTA 129 (302)
T ss_dssp EEEEEECTTSC-EEEEEECT------------------TSCEEEEEECTTSCEEEEEECTT-CSCEEEEEESSSSEEEEE
T ss_pred cceEEEcCCCC-eEEEecCC------------------ceEEEEEecccccceeeccccCC-ccccceeEEccCCCEEee
Confidence 46899999997 55553321 12333333332233333333333 233457788999975432
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceEEEEECCCCCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPND 396 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~ 396 (789)
. .. ...+|.++..++....... + ................-++.+++.+|+.... +.+|++++......
T Consensus 130 -~-~~---~~~i~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~---~~~i~~~~~~~~~~ 197 (302)
T d2p4oa1 130 -D-SY---RGAIWLIDVVQPSGSIWLE---H-PMLARSNSESVFPAANGLKRFGNFLYVSNTE---KMLLLRIPVDSTDK 197 (302)
T ss_dssp -E-TT---TTEEEEEETTTTEEEEEEE---C-GGGSCSSTTCCSCSEEEEEEETTEEEEEETT---TTEEEEEEBCTTSC
T ss_pred -c-cc---cccceeeeccCCcceeEec---C-CccceeeccCcccccccccccCCceeeecCC---CCeEEecccccccc
Confidence 2 11 4568888877632000000 0 0000000000000111245567888876543 47899999876431
Q ss_pred e--EEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec--ccCCeeEEEeec---ccCCcEEEEEE
Q 003878 397 W--FEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL--PIEIGSVNAISA---RREDSVVFISF 469 (789)
Q Consensus 397 ~--~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l--~~~~~~v~~~s~---s~d~~~l~~~~ 469 (789)
. ..+..+. ....++++.+++.+++....++ +|++++.+ |+..... ..+......+.+ ++|++.|+++.
T Consensus 198 ~~~~~~~~~~--~~pdgia~d~dG~l~va~~~~~--~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt 272 (302)
T d2p4oa1 198 PGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYN--SVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVT 272 (302)
T ss_dssp BCCCEEEEES--CCCSSEEEBTTCCEEEECBTTC--CEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred ccccccccCC--CCCcceEECCCCCEEEEEcCCC--cEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEEC
Confidence 1 1111111 3356788888777877665554 68889887 6542222 223222345555 56888888765
Q ss_pred cC--------CCCCcEEEEEECC
Q 003878 470 TS--------FLIPGIVYQCNLK 484 (789)
Q Consensus 470 ss--------~~~P~~ly~~dl~ 484 (789)
+. -..|..++++++.
T Consensus 273 ~~g~~~~~~~~~~~~~~~~~~~~ 295 (302)
T d2p4oa1 273 NGGMFLPPPTGVVPANVVRLEVG 295 (302)
T ss_dssp CTTSSSCCTTCCCCEEEEEEECS
T ss_pred CCCccCCCcCCcCCCeEEEEeCC
Confidence 42 3346677776653
|
| >d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Picromycin polyketide synthase species: Streptomyces venezuelae [TaxId: 54571]
Probab=98.30 E-value=2e-07 Score=95.01 Aligned_cols=212 Identities=11% Similarity=-0.021 Sum_probs=111.9
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHH-HHHHHHcC
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISA-SEYLISAG 613 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~-~~~L~~~~ 613 (789)
.+..|.|+++||.........|.. +...|. .++.|+.++.+|.+..... .......+++++.+. ++.+...
T Consensus 57 ~~~~~~l~c~~~~~~~g~~~~y~~-la~~L~-~~~~V~al~~pG~~~~~~~-----~~~~~~~s~~~~a~~~~~~i~~~- 128 (283)
T d2h7xa1 57 AEGRAVLVGCTGTAANGGPHEFLR-LSTSFQ-EERDFLAVPLPGYGTGTGT-----GTALLPADLDTALDAQARAILRA- 128 (283)
T ss_dssp -CCCCEEEEECCCCTTCSTTTTHH-HHHTTT-TTCCEEEECCTTCCBC--------CBCCEESSHHHHHHHHHHHHHHH-
T ss_pred CCCCceEEEeCCCCCCCCHHHHHH-HHHhcC-CCceEEEEeCCCCCCCCCC-----ccccccCCHHHHHHHHHHHHHHh-
Confidence 456789999998544333445554 456666 6789999999996532110 011122356666554 3444443
Q ss_pred CCCCCcEEEEeeChHHHHHHHHHHhC----CCceeEEEecCCcccccccc--cc--cCCccch-hhcCCCCcHH---HHH
Q 003878 614 YTQSRKLCIEGGSNGGLLVGACINQR----PDLFGCALAHVGVMDMLRYH--KF--TIGHAWV-SDFGCSEEEE---EFY 681 (789)
Q Consensus 614 ~~d~~~i~i~G~S~GG~l~~~~~~~~----pd~f~a~v~~~p~~d~~~~~--~~--~~~~~~~-~e~g~p~~~~---~~~ 681 (789)
.....+.++|||+||.++..++.+. ++...++|+..+........ .. ....... .+.....++. ...
T Consensus 129 -~~~~P~vL~GhS~GG~vA~e~A~~l~~~~g~~v~~LvL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~ 207 (283)
T d2h7xa1 129 -AGDAPVVLLGHSGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEPIEVWSRQLGEGLFAGELEPMSDARLLAMGR 207 (283)
T ss_dssp -HTTSCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTCCHHHHHTHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred -cCCCceEEEEeccchHHHHHHHHhhHHHcCCCceEEEEecCCccccccchhhhhhhhHHHhhcccccccccHHHHHHHH
Confidence 1235799999999999999888764 34566666654322111000 00 0000000 0111111111 111
Q ss_pred HHHhcCcccCCCCCCCCCCCCCCCCCeEEEEecCCCCCCCcHHHHHHHHHHHHhhccCCCCCCCCCcEEEEEeCCCCcCC
Q 003878 682 WLIKYSPLHNVRRPWEQNPDKPFQYPSTLLLTADHDDRVVPLHSLKLLATMQYVLCTSLENSPQTNPIIGRIERKAGHGV 761 (789)
Q Consensus 682 ~l~~~sP~~~v~~~~~~~~~~~~~~pp~Li~~g~~D~~V~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~~gH~~ 761 (789)
++..+.. ...... ..|+|+++|++|..+++.....|.+.+ ...+.+..+++ ||..
T Consensus 208 ~~~~~~~-~~~~~~----------~~Pvl~i~g~~d~~~~~~~~~~w~~~~-------------~~~~~~~~v~G-~H~~ 262 (283)
T d2h7xa1 208 YARFLAG-PRPGRS----------SAPVLLVRASEPLGDWQEERGDWRAHW-------------DLPHTVADVPG-DHFT 262 (283)
T ss_dssp HHHHHHS-CCCCCC----------CSCEEEEEESSCSSCCCGGGCCCSCCC-------------SSCSEEEEESS-CTTH
T ss_pred HHHHHhh-cccccc----------CCCeEEEEeCCCCCCCHHHHHHHHHhC-------------CCCcEEEEEcC-CCcc
Confidence 1111111 112222 689999999999999877654332211 33457777775 8964
Q ss_pred CCchhhHHHHHHHHHHHHHH
Q 003878 762 GLPTQKMIDEAADRYGFMAK 781 (789)
Q Consensus 762 ~~~~~~~~~~~~~~~~fl~~ 781 (789)
..... .....+.+-+||+.
T Consensus 263 ml~e~-~~~vA~~i~~~L~~ 281 (283)
T d2h7xa1 263 MMRDH-APAVAEAVLSWLDA 281 (283)
T ss_dssp HHHTT-HHHHHHHHHHHHHH
T ss_pred cccCC-HHHHHHHHHHHHHh
Confidence 32222 12344567788864
|
| >d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Bile-salt activated lipase (cholesterol esterase) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.29 E-value=2.5e-07 Score=104.46 Aligned_cols=133 Identities=19% Similarity=0.191 Sum_probs=85.8
Q ss_pred cCCCceEEEEEEEecCCCC-CCCCccEEEEEcCCC---CccCCCCCCHH----HHHHHHcCCeEEEEEeecCCCCCChhH
Q 003878 515 SKDGSTKIPMFIVSKKNIK-LDGSHPCLLYGYGGF---NISVTPSFSVS----RTILMRHLGAVFCIANIRGGGEYGEEW 586 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~-~~~~~P~ll~~hGg~---~~~~~~~~~~~----~~~~l~~~G~~v~~~~~RG~g~~g~~~ 586 (789)
+.|- +.+-|+.|+... .+++.||||++|||. |......+.+. -..+....+.+|+.+|||-|- +| |
T Consensus 77 sEDC---L~LNI~~P~~~~~~~~~lPV~V~iHGG~f~~Gs~~~~~~~~~~~~dg~~la~~~~vIvVt~nYRlg~-~G--F 150 (579)
T d2bcea_ 77 NEDC---LYLNIWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGP-LG--F 150 (579)
T ss_dssp CSCC---CEEEEEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHH-HH--H
T ss_pred CCcC---CEEEEEECCCCCCCCCCCcEEEEECCCcccCCCCCCcccCCccccchhhhhccCCEEEEeecccccc-cc--c
Confidence 4566 455566776532 346799999999984 33322222211 123444457999999999542 11 1
Q ss_pred Hhcc-cccCCcchHHHHHHHHHHHHHc---CCCCCCcEEEEeeChHHHHHHHHHHh--CCCceeEEEecCCcc
Q 003878 587 HKGG-ALAKKQNCFDDFISASEYLISA---GYTQSRKLCIEGGSNGGLLVGACINQ--RPDLFGCALAHVGVM 653 (789)
Q Consensus 587 ~~~~-~~~~~~~~~~D~~~~~~~L~~~---~~~d~~~i~i~G~S~GG~l~~~~~~~--~pd~f~a~v~~~p~~ 653 (789)
.... ....+...+.|.+.|++|+.++ ---||++|.|+|+|+||..+...+.. ...+|+.+|++++..
T Consensus 151 l~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 223 (579)
T d2bcea_ 151 LSTGDSNLPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGVG 223 (579)
T ss_dssp CCCSSTTCCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCCT
T ss_pred ccccccCCCccchhhHHHHHHHHHhhhhhhhccCcCceEeeecccccchhhhhhhhhcccCccccceeccCCc
Confidence 1111 1122344689999999999876 22499999999999999998876653 245999999998743
|
| >d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.25 E-value=1.5e-06 Score=88.40 Aligned_cols=99 Identities=17% Similarity=0.233 Sum_probs=70.0
Q ss_pred CCccEEEEEcCCCCccCCC---CCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHc
Q 003878 536 GSHPCLLYGYGGFNISVTP---SFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA 612 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~---~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~ 612 (789)
.++| ||++||-.+..... .|.. ....|.++||.|++++++|.+ ..+..+ +++.+.++.+.+.
T Consensus 6 ~~~P-vvlvHG~~g~~~~~~~~yw~~-i~~~L~~~G~~v~~~~~~~~~---~~~~~a----------~~l~~~i~~~~~~ 70 (285)
T d1ex9a_ 6 TKYP-IVLAHGMLGFDNILGVDYWFG-IPSALRRDGAQVYVTEVSQLD---TSEVRG----------EQLLQQVEEIVAL 70 (285)
T ss_dssp CSSC-EEEECCTTCCSEETTEESSTT-HHHHHHHTTCCEEEECCCSSS---CHHHHH----------HHHHHHHHHHHHH
T ss_pred CCCC-EEEECCCCCCccccchhhHHH-HHHHHHhCCCEEEEeCCCCCC---CcHHHH----------HHHHHHHHHHHHH
Confidence 5678 68889966553322 2443 445566699999999999744 333322 4455555555543
Q ss_pred CCCCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 613 GYTQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 613 ~~~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
...+++.++|||+||+++..++.++|++++.+|....
T Consensus 71 --~g~~~v~ligHS~GG~~~r~~~~~~p~~v~~lv~i~t 107 (285)
T d1ex9a_ 71 --SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGA 107 (285)
T ss_dssp --HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred --cCCCeEEEEEECccHHHHHHHHHHCCccceeEEEECC
Confidence 2346899999999999999999999999999987643
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.25 E-value=4.4e-05 Score=80.55 Aligned_cols=147 Identities=12% Similarity=0.062 Sum_probs=85.8
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCCEEEEEECCC
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKD 380 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~~l~~~tn~~ 380 (789)
...+++|||| +|+ +... ...|.++|+.++... ..+ .....+........ ..|+|||+.|+..++.+
T Consensus 187 ~~~v~~s~dg-~la-sgs~----Dg~i~iwd~~~~~~~-~~~------~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~ 253 (393)
T d1sq9a_ 187 ATSVDISERG-LIA-TGFN----NGTVQISELSTLRPL-YNF------ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN 253 (393)
T ss_dssp CCEEEECTTS-EEE-EECT----TSEEEEEETTTTEEE-EEE------ECCC---CCCCCEEEEEECSSTTEEEEEEEET
T ss_pred EEEEEECCCC-EEE-EEeC----CCcEEEEeecccccc-ccc------ccccccccccceEEEcccccccceeeeecCCC
Confidence 4568899998 443 3321 355888999874200 000 00001111111122 34899999887665432
Q ss_pred CCCceEEEEECCCCCCeEEeccC-----------CCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC
Q 003878 381 APKYKIIRVDLKEPNDWFEVIPE-----------AERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE 449 (789)
Q Consensus 381 ~~~~~L~~~dl~~~~~~~~l~~~-----------~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~ 449 (789)
....|..+|+++++....+... .....+..+++++++.++++...|+ .|++||+++|+.+..+..+
T Consensus 254 -t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~--~v~vWd~~~g~~~~~l~gH 330 (393)
T d1sq9a_ 254 -SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG--KLRFWDVKTKERITTLNMH 330 (393)
T ss_dssp -TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS--EEEEEETTTTEEEEEEECC
T ss_pred -CcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCC--EEEEEECCCCCEEEEECCc
Confidence 2356777898876522222110 1124578899998778899999887 7999999999877676654
Q ss_pred CeeEE----EeecccCCcE
Q 003878 450 IGSVN----AISARREDSV 464 (789)
Q Consensus 450 ~~~v~----~~s~s~d~~~ 464 (789)
...|. .+.+++++..
T Consensus 331 ~~~v~~~~~~~~~~~~~~~ 349 (393)
T d1sq9a_ 331 CDDIEIEEDILAVDEHGDS 349 (393)
T ss_dssp GGGCSSGGGCCCBCTTSCB
T ss_pred CCcccCCccEEEECCCCCE
Confidence 33332 2445666653
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.23 E-value=4.6e-06 Score=87.58 Aligned_cols=128 Identities=6% Similarity=-0.101 Sum_probs=79.6
Q ss_pred eEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeE
Q 003878 136 KVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFF 215 (789)
Q Consensus 136 ~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 215 (789)
..+++|||+....+.........+||++|.++++.+.. +..-
T Consensus 24 ~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-~~~~------------------------------------- 65 (368)
T d1mdah_ 24 DHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-SLGA------------------------------------- 65 (368)
T ss_dssp CCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-EEEC-------------------------------------
T ss_pred ccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-EeCC-------------------------------------
Confidence 34578999987666644333357999999999987652 2211
Q ss_pred EEeeeccccceeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEec
Q 003878 216 YLFSLVKSTIYSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD 295 (789)
Q Consensus 216 ~~~~s~~~g~~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~ 295 (789)
....++|||||+.|++....... .....+...|.+++..+......+ ..
T Consensus 66 --------------------~~~~~a~spDg~~i~~~~~~~~~---------~~~g~~d~~v~v~D~~t~~~~~~i--~~ 114 (368)
T d1mdah_ 66 --------------------FLSLAVAGHSGSDFALASTSFAR---------SAKGKRTDYVEVFDPVTFLPIADI--EL 114 (368)
T ss_dssp --------------------TTCEEEECTTSSCEEEEEEEETT---------TTSSSEEEEEEEECTTTCCEEEEE--EE
T ss_pred --------------------CCCcceECCCCCEEEEEcccCcc---------ccccccCCeEEEEECCCCcEeeee--cC
Confidence 13579999999999987542110 011234456888888775432222 22
Q ss_pred CCCCee-----EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCC
Q 003878 296 PEHPKY-----IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSAL 336 (789)
Q Consensus 296 ~~~~~~-----~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g 336 (789)
+..... ...++|||||++|++.... ...++++|++++
T Consensus 115 p~~~~~~~g~~p~~~a~SpDGk~l~va~~~----~~~v~~~d~~~~ 156 (368)
T d1mdah_ 115 PDAPRFSVGPRVHIIGNCASSACLLFFLFG----SSAAAGLSVPGA 156 (368)
T ss_dssp TTSCSCCBSCCTTSEEECTTSSCEEEEECS----SSCEEEEEETTT
T ss_pred CccceecccCCccceEECCCCCEEEEEeCC----CCeEEEEECCCC
Confidence 211100 1147899999999876532 245888998874
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.19 E-value=0.00036 Score=69.05 Aligned_cols=220 Identities=11% Similarity=0.032 Sum_probs=131.5
Q ss_pred EEEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCC
Q 003878 215 FYLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT 284 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~ 284 (789)
.+++++..+|+-.||.+.. .-....++|+|++..++...... .+..++...
T Consensus 30 ~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~ 90 (317)
T d1vyhc1 30 SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM-------------------TIKLWDFQG 90 (317)
T ss_dssp SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS-------------------CCCEEETTS
T ss_pred CEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccc-------------------ccccccccc
Confidence 4688888999999998654 11235789999999888765432 122233322
Q ss_pred CCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce-e
Q 003878 285 KQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-Y 363 (789)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 363 (789)
.. ... ....+........++|+++.++.... ...+.++++.++. ....+....... .
T Consensus 91 ~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 148 (317)
T d1vyhc1 91 FE--CIR--TMHGHDHNVSSVSIMPNGDHIVSASR-----DKTIKMWEVQTGY-------------CVKTFTGHREWVRM 148 (317)
T ss_dssp SC--EEE--CCCCCSSCEEEEEECSSSSEEEEEET-----TSEEEEEETTTCC-------------EEEEEECCSSCEEE
T ss_pred cc--ccc--ccccccccceeeeccCCCceEEeecc-----CcceeEeecccce-------------eeeEEccCCCccee
Confidence 11 111 11122333557889999999886553 3457788887742 122222211112 2
Q ss_pred EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec--------------------CCEEEEE
Q 003878 364 EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN--------------------LNQMIVS 423 (789)
Q Consensus 364 ~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~--------------------~~~lv~~ 423 (789)
..+++++..|+..+. +..|..+++.++.....+..+. ..+..+.+.+ .+.++++
T Consensus 149 ~~~~~~~~~l~~~~~----d~~v~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (317)
T d1vyhc1 149 VRPNQDGTLIASCSN----DQTVRVWVVATKECKAELREHR--HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 222 (317)
T ss_dssp EEECTTSSEEEEEET----TSCEEEEETTTCCEEEEECCCS--SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred eecccCCCEEEEEeC----CCeEEEEeeccceeeEEEecCC--CCceEEEEeeccccceeeccccceeeeeccCCceeEe
Confidence 347888887765443 3467777877654222222211 2222222221 1345666
Q ss_pred EEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 424 YLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 424 ~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
...++ .|++|++.+++.+..+..+...+..+.++++++.++... .-+.+..||+.+++
T Consensus 223 ~~~d~--~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~----~dg~i~iwd~~~~~ 280 (317)
T d1vyhc1 223 GSRDK--TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA----DDKTLRVWDYKNKR 280 (317)
T ss_dssp EETTS--EEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEE----TTTEEEEECCTTSC
T ss_pred ccCCC--EEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEE----CCCeEEEEECCCCc
Confidence 67676 688999998887666665666777888999988665432 23589999998875
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.18 E-value=0.00032 Score=70.69 Aligned_cols=211 Identities=10% Similarity=0.071 Sum_probs=118.6
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
+..++|+||++.|+-...+ ..|.+|++.+.. .+..+.. +...+..+.|+|+|++++.
T Consensus 58 I~~l~~s~~~~~l~sgs~D-------------------g~v~iWd~~~~~--~~~~~~~--~~~~v~~v~~~~~~~~l~~ 114 (340)
T d1tbga_ 58 IYAMHWGTDSRLLVSASQD-------------------GKLIIWDSYTTN--KVHAIPL--RSSWVMTCAYAPSGNYVAC 114 (340)
T ss_dssp EEEEEECTTSSEEEEEETT-------------------TEEEEEETTTTE--EEEEEEC--SCSCEEEEEECTTSSEEEE
T ss_pred EEEEEECCCCCEEEEEECC-------------------Cceeeeecccce--eEEEEec--ccccEEeeEeeccceeeee
Confidence 6789999999988765432 358899987653 2223333 2344678999999999987
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEee--------------------e-----------c-c-cccee
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKL--------------------I-----------D-G-FDAQY 363 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l--------------------~-----------~-~-~~~~~ 363 (789)
...+. .+.+++.............-......... . . . .....
T Consensus 115 ~~~d~-----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (340)
T d1tbga_ 115 GGLDN-----ICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMS 189 (340)
T ss_dssp EETTC-----CEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred ecccc-----eeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEee
Confidence 66432 24444433211000000000000000000 0 0 0 00000
Q ss_pred EEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCcee
Q 003878 364 EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLL 443 (789)
Q Consensus 364 ~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~ 443 (789)
..+.+.+..++ .. ..+..|..+|+.+++....+..+. ..+..+++++++.++++...++ .|++|++...+..
T Consensus 190 ~~~~~~~~~~~-~~---~~d~~v~i~d~~~~~~~~~~~~h~--~~i~~v~~~p~~~~l~s~s~d~--~i~~~~~~~~~~~ 261 (340)
T d1tbga_ 190 LSLAPDTRLFV-SG---ACDASAKLWDVREGMCRQTFTGHE--SDINAICFFPNGNAFATGSDDA--TCRLFDLRADQEL 261 (340)
T ss_dssp EEECTTSSEEE-EE---ETTTEEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTS--CEEEEETTTTEEE
T ss_pred eccccccceeE-Ee---ecCceEEEEECCCCcEEEEEeCCC--CCeEEEEECCCCCEEEEEeCCC--eEEEEeecccccc
Confidence 11222233222 21 124678888888765333343333 5678899998777777888777 6888999866654
Q ss_pred eecccC--CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 444 HQLPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 444 ~~l~~~--~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
..+... ...+..+.++++++.++.... -+.++.||+.+++
T Consensus 262 ~~~~~~~~~~~i~~~~~s~~~~~l~~g~~----dg~i~iwd~~~~~ 303 (340)
T d1tbga_ 262 MTYSHDNIICGITSVSFSKSGRLLLAGYD----DFNCNVWDALKAD 303 (340)
T ss_dssp EEECCTTCCSCEEEEEECSSSCEEEEEET----TSCEEEEETTTCC
T ss_pred cccccccccCceEEEEECCCCCEEEEEEC----CCEEEEEECCCCc
Confidence 444332 455778889999987664432 3578999998885
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.12 E-value=0.00047 Score=70.36 Aligned_cols=203 Identities=10% Similarity=0.124 Sum_probs=113.8
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCC--eeEEEEEEecCCcEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHP--KYIFSGHVTEDGQYLV 315 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~--~~~~~~~~SpDG~~l~ 315 (789)
.++++.+||+.+++... ...+.+.+..+... .++....+.. .....+.+.+||+. +
T Consensus 74 ~Gl~~~~dg~~l~vad~-------------------~~~i~~~~~~g~~~--~~~~~~~~g~~~~~pndl~~d~~G~l-y 131 (314)
T d1pjxa_ 74 AGCQCDRDANQLFVADM-------------------RLGLLVVQTDGTFE--EIAKKDSEGRRMQGCNDCAFDYEGNL-W 131 (314)
T ss_dssp EEEEECSSSSEEEEEET-------------------TTEEEEEETTSCEE--ECCSBCTTSCBCBCCCEEEECTTSCE-E
T ss_pred eeEEEeCCCCEEEEEEC-------------------CCeEEEEeCCCcEE--EEEeccccccccCCCcEEEECCCCCE-E
Confidence 57899999988876522 12366666543211 1111111111 01135778999964 4
Q ss_pred EEEEcC-----------CCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce-eEEEecCCC----EEEEEECC
Q 003878 316 MCIEEN-----------CDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ-YEVIANDDT----VFTFLTNK 379 (789)
Q Consensus 316 ~~~~~~-----------~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dG~----~l~~~tn~ 379 (789)
++.... ......||.++.+.. ...+..+.... -..|+++++ .||+..
T Consensus 132 vtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~---------------~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d-- 194 (314)
T d1pjxa_ 132 ITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ---------------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAE-- 194 (314)
T ss_dssp EEECBCBCTTSCCCBTTSSSCEEEEEECTTSC---------------EEEEEEEESSEEEEEEEECTTSCEEEEEEEE--
T ss_pred EecCccCcccccccceeccCCceEEEEeecCc---------------eeEeeCCcceeeeeEECCCCCcceeEEEEEe--
Confidence 443211 012346888876541 12222222111 123777654 566543
Q ss_pred CCCCceEEEEECCCCCC--eEEec---cCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEE
Q 003878 380 DAPKYKIIRVDLKEPND--WFEVI---PEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVN 454 (789)
Q Consensus 380 ~~~~~~L~~~dl~~~~~--~~~l~---~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~ 454 (789)
..+.+|+++++..... .+.++ +........++++..++.|++.....+ +|+++++++|+....+..|.....
T Consensus 195 -~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g--~I~~~dp~~g~~~~~i~~p~~~~t 271 (314)
T d1pjxa_ 195 -TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS--HIEVFGPDGGQPKMRIRCPFEKPS 271 (314)
T ss_dssp -TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT--EEEEECTTCBSCSEEEECSSSCEE
T ss_pred -ecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCC--EEEEEeCCCCEEEEEEECCCCCEE
Confidence 2457899988764431 12222 222223456788887678887765544 899999987765556666644456
Q ss_pred EeecccCCcEEEEEEcCCCCCcEEEEEECCC
Q 003878 455 AISARREDSVVFISFTSFLIPGIVYQCNLKT 485 (789)
Q Consensus 455 ~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~t 485 (789)
.+++.+|++.|+++-+ .-++|+++++..
T Consensus 272 ~~afg~d~~~lyVt~~---~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 272 NLHFKPQTKTIFVTEH---ENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTSSEEEEEET---TTTEEEEEECSS
T ss_pred EEEEeCCCCEEEEEEC---CCCcEEEEECCC
Confidence 7788888988888653 346899998753
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.11 E-value=5.5e-05 Score=76.61 Aligned_cols=205 Identities=11% Similarity=-0.017 Sum_probs=104.8
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCe---eEEEEEEecCCcE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPK---YIFSGHVTEDGQY 313 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~---~~~~~~~SpDG~~ 313 (789)
..++++||||+.+|.+.. ....|+++++.+..... ......... ....+++||||++
T Consensus 36 ~~~i~~spDg~~l~v~~~------------------~~~~v~v~D~~t~~~~~--~~~~~~~~~~~~~~~~v~~s~dg~~ 95 (337)
T d1pbyb_ 36 PMVPMVAPGGRIAYATVN------------------KSESLVKIDLVTGETLG--RIDLSTPEERVKSLFGAALSPDGKT 95 (337)
T ss_dssp CCCEEECTTSSEEEEEET------------------TTTEEEEEETTTCCEEE--EEECCBTTEEEECTTCEEECTTSSE
T ss_pred ccEEEECCCCCEEEEEEC------------------CCCeEEEEECCCCcEEE--EEecCCCcccccceeeEEEcCCCcE
Confidence 368999999999987632 23468899988754322 222211111 1125789999999
Q ss_pred EEEEEEcCC-------CCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCCCEEEEEECCCCCCceE
Q 003878 314 LVMCIEENC-------DPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDDTVFTFLTNKDAPKYKI 386 (789)
Q Consensus 314 l~~~~~~~~-------~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG~~l~~~tn~~~~~~~L 386 (789)
++....... .....+.++|..++. ...............+++||+.++... ..+
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-------------~~~~~~~~~~~~~~~~s~dg~~l~~~~------~~~ 156 (337)
T d1pbyb_ 96 LAIYESPVRLELTHFEVQPTRVALYDAETLS-------------RRKAFEAPRQITMLAWARDGSKLYGLG------RDL 156 (337)
T ss_dssp EEEEEEEEEECSSCEEECCCEEEEEETTTTE-------------EEEEEECCSSCCCEEECTTSSCEEEES------SSE
T ss_pred EEEeecCCcceeeeccccccceeeccccCCe-------------EEEeccccCCceEEEEcCCCCEEEEEc------CCc
Confidence 987764321 023467778877642 111111121222345899999888642 224
Q ss_pred EEEECCCCCCeEEeccCCCCce-----eee--EEEec--CCEEEEE---EEe--------CCeEEEEEEECCCCceeeec
Q 003878 387 IRVDLKEPNDWFEVIPEAERDV-----LES--ATAVN--LNQMIVS---YLS--------DVKYVLQIRDLKNGSLLHQL 446 (789)
Q Consensus 387 ~~~dl~~~~~~~~l~~~~~~~~-----i~~--v~~~~--~~~lv~~---~~~--------~g~~~L~~~dl~tG~~~~~l 446 (789)
..+|..+++ ....++...... ..+ +.... ....... ... .....+.+++..+|+.....
T Consensus 157 ~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (337)
T d1pbyb_ 157 HVMDPEAGT-LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235 (337)
T ss_dssp EEEETTTTE-EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred ceeeeecCc-EEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEE
Confidence 556665543 111111110000 000 00000 0111111 100 11236888888877652222
Q ss_pred ccC-CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 447 PIE-IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 447 ~~~-~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
..+ .........++++..++.. . ..+..||+.+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~-~-----~~i~v~d~~~~~ 271 (337)
T d1pbyb_ 236 VRIMDVFYFSTAVNPAKTRAFGA-Y-----NVLESFDLEKNA 271 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEE-E-----SEEEEEETTTTE
T ss_pred ecCCCcceEEEEecccceEEEEc-c-----ccEEEEECCCCc
Confidence 222 2233345667787766543 2 578999999885
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.10 E-value=1.9e-05 Score=80.53 Aligned_cols=79 Identities=8% Similarity=-0.004 Sum_probs=53.3
Q ss_pred EEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceee
Q 003878 365 VIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLH 444 (789)
Q Consensus 365 ~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~ 444 (789)
.+++++..+++.. ...|..+|+.+++ ....++.. ..+.++++++|+..++....++ .|.+||.++++.+.
T Consensus 258 ~~~~~~~~~~~~~-----~~~v~v~d~~~~~-~~~~~~~~--~~~~~va~s~DG~~l~v~~~d~--~v~v~D~~t~~~i~ 327 (346)
T d1jmxb_ 258 LRSPKDPNQIYGV-----LNRLAKYDLKQRK-LIKAANLD--HTYYCVAFDKKGDKLYLGGTFN--DLAVFNPDTLEKVK 327 (346)
T ss_dssp EECSSCTTEEEEE-----ESEEEEEETTTTE-EEEEEECS--SCCCEEEECSSSSCEEEESBSS--EEEEEETTTTEEEE
T ss_pred EEeCCCCEEEEec-----CCeEEEEECCCCc-EEEEEcCC--CCEEEEEEcCCCCEEEEEeCCC--cEEEEECccCCEEE
Confidence 3667766655432 2368889998876 22333332 3467899998766665666665 79999999999888
Q ss_pred ecccCCeeE
Q 003878 445 QLPIEIGSV 453 (789)
Q Consensus 445 ~l~~~~~~v 453 (789)
.|..|.+..
T Consensus 328 ~i~~p~g~~ 336 (346)
T d1jmxb_ 328 NIKLPGGDM 336 (346)
T ss_dssp EEECSSSCC
T ss_pred EEECCCCCc
Confidence 888775543
|
| >d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: TTHA1544-like domain: Hypothetical protein TTHA1544 species: Thermus thermophilus [TaxId: 274]
Probab=98.07 E-value=3.4e-06 Score=73.50 Aligned_cols=96 Identities=11% Similarity=-0.013 Sum_probs=67.1
Q ss_pred cCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccC
Q 003878 515 SKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAK 594 (789)
Q Consensus 515 s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~ 594 (789)
.-+| .+|.+... |..|.||++||.+.. | ...|. ++|.|+++|.||.|... .
T Consensus 7 ~~~G-~~l~y~~~--------G~G~pvlllHG~~~~-----w----~~~L~-~~yrvi~~DlpG~G~S~----------~ 57 (122)
T d2dsta1 7 HLYG-LNLVFDRV--------GKGPPVLLVAEEASR-----W----PEALP-EGYAFYLLDLPGYGRTE----------G 57 (122)
T ss_dssp EETT-EEEEEEEE--------CCSSEEEEESSSGGG-----C----CSCCC-TTSEEEEECCTTSTTCC----------C
T ss_pred EECC-EEEEEEEE--------cCCCcEEEEeccccc-----c----ccccc-CCeEEEEEeccccCCCC----------C
Confidence 3467 77766543 456788899985321 1 23455 89999999999987532 1
Q ss_pred CcchHHHHHHHHHHHHHcCCCCCCcEEEEeeChHHHHHHHHHHhCCC
Q 003878 595 KQNCFDDFISASEYLISAGYTQSRKLCIEGGSNGGLLVGACINQRPD 641 (789)
Q Consensus 595 ~~~~~~D~~~~~~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~~pd 641 (789)
...+.+++.+.+..+++. .+-++..|+|+|+||.++..++...+.
T Consensus 58 p~~s~~~~a~~i~~ll~~--L~i~~~~viG~S~Gg~ia~~laa~~~~ 102 (122)
T d2dsta1 58 PRMAPEELAHFVAGFAVM--MNLGAPWVLLRGLGLALGPHLEALGLR 102 (122)
T ss_dssp CCCCHHHHHHHHHHHHHH--TTCCSCEEEECGGGGGGHHHHHHTTCC
T ss_pred cccccchhHHHHHHHHHH--hCCCCcEEEEeCccHHHHHHHHhhccc
Confidence 234556666666666665 234689999999999999999988664
|
| >d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Fatty acid synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=8.6e-06 Score=80.61 Aligned_cols=92 Identities=12% Similarity=0.021 Sum_probs=56.6
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHH-HHHHHHHcCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFIS-ASEYLISAGY 614 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~-~~~~L~~~~~ 614 (789)
.+.| |+++||+.++... | ..++...++.|+.+|.+|-|... .++++.+ .++.+.+.
T Consensus 24 ~~~P-l~l~Hg~~gs~~~--~----~~l~~~L~~~v~~~d~~g~~~~~--------------~~~~~a~~~~~~~~~~-- 80 (286)
T d1xkta_ 24 SERP-LFLVHPIEGSTTV--F----HSLASRLSIPTYGLQCTRAAPLD--------------SIHSLAAYYIDCIRQV-- 80 (286)
T ss_dssp CSCC-EEEECCTTCCCGG--G----HHHHHTCSSCEEEECCCTTSCCS--------------CHHHHHHHHHHHHHHH--
T ss_pred CCCe-EEEECCCCccHHH--H----HHHHHHcCCeEEEEeCCCCCCCC--------------CHHHHHHHHHHHHHHh--
Confidence 4456 6789998877422 2 24444457889999999865432 1222222 22223332
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecC
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHV 650 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~ 650 (789)
....++.++|||+||.++..+|.++|++...++...
T Consensus 81 ~~~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l~ 116 (286)
T d1xkta_ 81 QPEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHN 116 (286)
T ss_dssp CCSSCCEEEEETHHHHHHHHHHHHHHHC------CC
T ss_pred cCCCceEEeecCCccHHHHHHHHHHHHcCCCceeEE
Confidence 233689999999999999999999999877765543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.98 E-value=0.00016 Score=71.96 Aligned_cols=258 Identities=14% Similarity=0.066 Sum_probs=140.0
Q ss_pred CCcEEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceec-ccccccccccccCccceeeeeeccccccccccccc
Q 003878 129 DGTAALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEA-DALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLY 207 (789)
Q Consensus 129 ~~~~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 207 (789)
++...|..+++|| |+ + |+...+|++||+.++.... ..+..+ .+.++.
T Consensus 11 gH~~~I~~l~~s~----l~-s----gs~Dg~v~~Wd~~~~~~~h~~~V~~~------------------~~~~~~----- 58 (287)
T d1pgua2 11 GHNKGITALTVNP----LI-S----GSYDGRIMEWSSSSMHQDHSNLIVSL------------------DNSKAQ----- 58 (287)
T ss_dssp CCSSCEEEEETTT----TE-E----EETTSCEEETTTTEEECCCCSCEEEE------------------ECCSTT-----
T ss_pred CCCCceEEEEECc----EE-E----EeCCCeEEEEECCCCCCCCCCCEEEE------------------EecCCC-----
Confidence 3455678888998 43 3 3334579999998764321 011111 011221
Q ss_pred cccceeeEEEeeeccccceeeeeeec---ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCC
Q 003878 208 LRGIFFFFYLFSLVKSTIYSFWSVVS---QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGT 284 (789)
Q Consensus 208 ~~~~~~~~~~~~s~~~g~~~l~~~~~---~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~ 284 (789)
.+++...+++..+|.+.. ......+.+++|+..++.. . ...+..++..+
T Consensus 59 --------~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~ 110 (287)
T d1pgua2 59 --------EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLT-N-------------------DDDLLILQSFT 110 (287)
T ss_dssp --------CCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEE-T-------------------TSEEEEEETTT
T ss_pred --------eEEEEeeccccccccccccccccceeeeeeccCCceEEEe-e-------------------cccceeeeccc
Confidence 244556677888887654 1223456778777666543 1 12366666655
Q ss_pred CCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc--ce
Q 003878 285 KQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD--AQ 362 (789)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~--~~ 362 (789)
... ........ + ...++++++.+++...++ ..+.++++.+.. ....+..... ..
T Consensus 111 ~~~--~~~~~~~~-~----~~~~~~~~~~~~v~~~~~----~~v~~~~~~~~~-------------~~~~~~~~~~~~v~ 166 (287)
T d1pgua2 111 GDI--IKSVRLNS-P----GSAVSLSQNYVAVGLEEG----NTIQVFKLSDLE-------------VSFDLKTPLRAKPS 166 (287)
T ss_dssp CCE--EEEEECSS-C----EEEEEECSSEEEEEETTT----SCEEEEETTEEE-------------EEEECSSCCSSCEE
T ss_pred eee--eeeccccc-e----eeeeeccCcceeeecccc----ceeeeeeccccc-------------eeeeeeeccCCcee
Confidence 432 22222211 1 246788999988876432 336667765421 0011111111 11
Q ss_pred eEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEec----------CCEEEEEEEeCCeEEE
Q 003878 363 YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVN----------LNQMIVSYLSDVKYVL 432 (789)
Q Consensus 363 ~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~----------~~~lv~~~~~~g~~~L 432 (789)
...|+|+|++|+..+. ++.|..+|+.++........ .....+..+++.+ ++.++++...|+ .|
T Consensus 167 ~~~~s~~~~~l~~g~~----dg~i~i~d~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~--~i 239 (287)
T d1pgua2 167 YISISPSETYIAAGDV----MGKILLYDLQSREVKTSRWA-FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT--NI 239 (287)
T ss_dssp EEEECTTSSEEEEEET----TSCEEEEETTTTEEEECCSC-CCSSCEEEEEECCCC------CCSCCEEEEEETTS--CE
T ss_pred EEEeccCccccccccc----cccccceeeccccccccccc-ccccccceeeecccccccccccCCCCeeEeecCCC--eE
Confidence 2348999998876543 35788899877641111111 1124466676654 235677777776 68
Q ss_pred EEEECCCCc-eeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEE
Q 003878 433 QIRDLKNGS-LLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 433 ~~~dl~tG~-~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~d 482 (789)
++|+++++. ..+.+..+...|..+.+++++. +++.++ -..+..|+
T Consensus 240 ~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~--l~s~g~---D~~v~iW~ 285 (287)
T d1pgua2 240 FIYSVKRPMKIIKALNAHKDGVNNLLWETPST--LVSSGA---DACIKRWN 285 (287)
T ss_dssp EEEESSCTTCCEEETTSSTTCEEEEEEEETTE--EEEEET---TSCEEEEE
T ss_pred EEEECCCCCeEEEEeCCCCCCeEEEEECCCCE--EEEEEC---CCeEEEEE
Confidence 899987543 3344444466788888888763 344433 24555555
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.91 E-value=0.0025 Score=67.71 Aligned_cols=264 Identities=13% Similarity=0.069 Sum_probs=149.2
Q ss_pred eEeCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEEEEecCC-----------c
Q 003878 87 FKRGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAYALSYSG-----------S 155 (789)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~g-----------~ 155 (789)
.++|.++.|.-..+|...+.|++++..+++. +-+. +. ....+++.|++|++.|.|+..... .
T Consensus 133 Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~--~~~~--i~---~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~ 205 (430)
T d1qfma1 133 SEDGEYFAYGLSASGSDWVTIKFMKVDGAKE--LPDV--LE---RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN 205 (430)
T ss_dssp CTTSSEEEEEEEETTCSCEEEEEEETTTTEE--EEEE--EE---EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred cCCCCEEEEEeccccCchheeEEeccCccee--cccc--cc---cccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence 3577888888888888888888887655542 1111 10 011256889999999999873211 1
Q ss_pred eEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccceeeeeeeccc
Q 003878 156 DWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTIYSFWSVVSQF 235 (789)
Q Consensus 156 ~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~~~l~~~~~~~ 235 (789)
....++...+.+.......+-.. ++.. .
T Consensus 206 ~~~~v~~h~lgt~~~~d~~v~~e---------------------~d~~------------------------~------- 233 (430)
T d1qfma1 206 LHQKLYYHVLGTDQSEDILCAEF---------------------PDEP------------------------K------- 233 (430)
T ss_dssp CCCEEEEEETTSCGGGCEEEECC---------------------TTCT------------------------T-------
T ss_pred CcceEEEEECCCCcccccccccc---------------------ccCC------------------------c-------
Confidence 13478888887763322111110 0000 0
Q ss_pred ccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC------cEEEEecCCCCeeEEEEEEec
Q 003878 236 KFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE------DILCWKDPEHPKYIFSGHVTE 309 (789)
Q Consensus 236 ~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~------~~~~~~~~~~~~~~~~~~~Sp 309 (789)
-..++..|+||+.+++..... ......+++.++...... ...+........+ . ...
T Consensus 234 ~~~~~~~s~d~~~l~i~~~~~--------------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~ 295 (430)
T d1qfma1 234 WMGGAELSDDGRYVLLSIREG--------------CDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD---Y-VTN 295 (430)
T ss_dssp CEEEEEECTTSCEEEEEEECS--------------SSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE---E-EEE
T ss_pred eEEeeeccCCcceeeEEeecc--------------CCccEEEEEeeCCCcccccccccceeEeecccccceE---E-Eec
Confidence 023455688999988765432 223345777776543221 1223332222211 1 334
Q ss_pred CCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccce--eEEEecCCCEEEEEECCCCCCceEE
Q 003878 310 DGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQ--YEVIANDDTVFTFLTNKDAPKYKII 387 (789)
Q Consensus 310 DG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~s~dG~~l~~~tn~~~~~~~L~ 387 (789)
+|..+++.++.. ..+..|..+++++.. ...|..++...+.. ...++..+++|++....+ ...+|.
T Consensus 296 ~~~~~~~~Tn~~-a~~~~L~~~~~~~~~-----------~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~-~~~~l~ 362 (430)
T d1qfma1 296 EGTVFTFKTNRH-SPNYRLINIDFTDPE-----------ESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD-VKNTLQ 362 (430)
T ss_dssp ETTEEEEEECTT-CTTCEEEEEETTBCC-----------GGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET-TEEEEE
T ss_pred CCceeecccCcc-cccceeEEecCCCCc-----------cccceEEecccCcceeeeEEEEECCEEEEEEEcC-CEeEEE
Confidence 666666666543 346789999987631 22355555432221 123444567777665554 568899
Q ss_pred EEECCCCCCeEEeccCCCCceeeeEEEec-CCEEEEEEEeC-CeEEEEEEECCCCce
Q 003878 388 RVDLKEPNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSD-VKYVLQIRDLKNGSL 442 (789)
Q Consensus 388 ~~dl~~~~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~-g~~~L~~~dl~tG~~ 442 (789)
+++++++. +..+.+... ..+.++.... ++.+.+.+..- .++.++.+|+++|+.
T Consensus 363 v~~~~~~~-~~~~~~~~~-~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 363 LHDLATGA-LLKIFPLEV-GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEETTTCC-EEEEECCCS-SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EEECCCCc-EEEecCCCC-ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 99998876 666655543 4555555433 25566665543 356999999998853
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.70 E-value=0.0018 Score=68.43 Aligned_cols=124 Identities=14% Similarity=0.158 Sum_probs=63.6
Q ss_pred EEEecCCCEEEEEECCCCCCceEEEEECCCCC-------Ce-EEeccCCCCce-eeeEEEecCCEEEEEEEeCCeEEEEE
Q 003878 364 EVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN-------DW-FEVIPEAERDV-LESATAVNLNQMIVSYLSDVKYVLQI 434 (789)
Q Consensus 364 ~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~-------~~-~~l~~~~~~~~-i~~v~~~~~~~lv~~~~~~g~~~L~~ 434 (789)
..++|||+++++ ++.. ...+-++|+++-. .. ..+..+.+... ...-++.+++..|.+..-+ ++|..
T Consensus 263 v~vSPDGkyl~~-~~~~--~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~d--s~v~k 337 (441)
T d1qnia2 263 LNTSPDGKYFIA-NGKL--SPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFID--SQVCK 337 (441)
T ss_dssp EEECTTSCEEEE-ECTT--SSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTT--TEEEE
T ss_pred ceECCCCCEEEE-eCCc--CCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEccccc--ceEEE
Confidence 348999998875 4433 3567778864311 11 11222221110 1123455545555444333 48899
Q ss_pred EECCC------Cc----eeeecccC--CeeEE---EeecccCCcEEEEEEc----------CCCCCcEEEEEECCCCCce
Q 003878 435 RDLKN------GS----LLHQLPIE--IGSVN---AISARREDSVVFISFT----------SFLIPGIVYQCNLKTETPE 489 (789)
Q Consensus 435 ~dl~t------G~----~~~~l~~~--~~~v~---~~s~s~d~~~l~~~~s----------s~~~P~~ly~~dl~tg~~~ 489 (789)
|+++. |+ .+..+... .|... +.+++|||+.|+ +.+ ++..|..-.++|.... +
T Consensus 338 w~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~-s~~k~s~dr~~~~g~~~~~~~q~~~i~~~--~ 414 (441)
T d1qnia2 338 WNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLV-VLSKFSKDRFLPVGPLHPENDQLIDISGE--E 414 (441)
T ss_dssp EEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEE-EEESCCGGGSCCCSSSCCEEEEEEECSSS--S
T ss_pred eccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEE-ecCccccccCcCCCCCCCccceeEEecCC--e
Confidence 99741 11 11222221 23332 235789998765 332 4556777788887655 3
Q ss_pred EEEeee
Q 003878 490 MKIFRE 495 (789)
Q Consensus 490 ~~~l~~ 495 (789)
++++..
T Consensus 415 ~~~~~~ 420 (441)
T d1qnia2 415 MKLVHD 420 (441)
T ss_dssp CEEEEE
T ss_pred EEEEec
Confidence 666654
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.0092 Score=57.56 Aligned_cols=91 Identities=15% Similarity=0.076 Sum_probs=52.3
Q ss_pred CceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCC
Q 003878 383 KYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARRED 462 (789)
Q Consensus 383 ~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~ 462 (789)
+..|..+++.+++....+..+. ..+..+.+.+ . .+++...++ .|++||+.+++.+.........+... +++.
T Consensus 157 d~~i~~~d~~~~~~~~~~~~~~--~~v~~~~~~~-~-~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~~--~~~~ 228 (293)
T d1p22a2 157 DRTIKVWNTSTCEFVRTLNGHK--RGIACLQYRD-R-LVVSGSSDN--TIRLWDIECGACLRVLEGHEELVRCI--RFDN 228 (293)
T ss_dssp TSEEEEEETTTCCEEEEEECCS--SCEEEEEEET-T-EEEEEETTS--CEEEEETTTCCEEEEECCCSSCEEEE--ECCS
T ss_pred CCceeeecCCCCcEEEEEcccc--cccccccCCC-C-eEEEecCCC--EEEEEecccceeeeeecccceeeeec--cccc
Confidence 4678889988776333332222 3455566654 4 455566666 68899998777655444444444333 3455
Q ss_pred cEEEEEEcCCCCCcEEEEEECCC
Q 003878 463 SVVFISFTSFLIPGIVYQCNLKT 485 (789)
Q Consensus 463 ~~l~~~~ss~~~P~~ly~~dl~t 485 (789)
..++. .+ .-+.++.||+.+
T Consensus 229 ~~l~s-g~---~dg~i~iwd~~~ 247 (293)
T d1p22a2 229 KRIVS-GA---YDGKIKVWDLVA 247 (293)
T ss_dssp SEEEE-EE---TTSCEEEEEHHH
T ss_pred eEEEE-Ec---CCCEEEEEECCC
Confidence 54443 22 235788888644
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=97.66 E-value=0.02 Score=52.58 Aligned_cols=291 Identities=11% Similarity=0.052 Sum_probs=156.3
Q ss_pred HHHHHHhhhcCCCCCCceE-eCCEEEEEEEcCCCCeeEEEEecCCCCCceEEeccCCCCCCCcEEEEeEEeCCCCcEEEE
Q 003878 70 LREKITKLFDSPRYDAPFK-RGNKYFYFHNTGLQPQSVLYVQDSLDAKAKVLLDPNTLSDDGTAALIKVSVSEDAKYLAY 148 (789)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~SpDg~~la~ 148 (789)
+.+.++.+..-+.|+.--+ +++.+.|+-...+.-. +|.. ++.+.|.|.-..++ .....-+.=..+.|
T Consensus 4 ivk~lE~lv~ip~Y~v~Gkl~~d~ll~~~~seG~vn--i~~l---~g~~~vkLtkePI~-------~~~~Pk~~ldfi~f 71 (313)
T d2hu7a1 4 IVRDVERLIAVEKYSLQGVVDGDKLLVVGFSEGSVN--AYLY---DGGETVKLNREPIN-------SVLDPHYGVGRVIL 71 (313)
T ss_dssp HHHHHHHHHHSCEEEEEEEETTTEEEEEEEETTEEE--EEEE---SSSSCEECCSSCCS-------EECEECTTBSEEEE
T ss_pred HHHHHHHHhcccceeEEEEecCCcEEEEEeccceEE--EEEE---eCCEEEEEeccccc-------CcCCCccCcceEEE
Confidence 3344444444455554433 5777777776655433 5543 33344444333322 22335555568888
Q ss_pred EEec-CCceEEEEEEEEcCC-Cceec-ccccccccccccCccceeeeeeccccccccccccccccceeeEEEeeeccccc
Q 003878 149 ALSY-SGSDWATIKLMRIED-QIVEA-DALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFFYLFSLVKSTI 225 (789)
Q Consensus 149 ~~~~-~g~~~~~i~v~dl~t-g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~s~~~g~ 225 (789)
+.+. .|.|...|++.+++. |+... .....+
T Consensus 72 ~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk~v----------------------------------------------- 104 (313)
T d2hu7a1 72 VRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPM----------------------------------------------- 104 (313)
T ss_dssp EEECSTTSCCEEEEEEETTSTTCEEECTTSCSB-----------------------------------------------
T ss_pred EeehhcCcceeeEEEEccCCCCeeeEecCCceE-----------------------------------------------
Confidence 8874 589999999999982 33322 111112
Q ss_pred eeeeeeecccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEE
Q 003878 226 YSFWSVVSQFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSG 305 (789)
Q Consensus 226 ~~l~~~~~~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~ 305 (789)
+..+.+. |++.++|+...+ ....+|..+-|. . ..+...| +. ++
T Consensus 105 ----------RI~S~~y--ddk~vvF~Gase----------------d~~~LYviegGk-l---rkL~~vP--pF---sF 147 (313)
T d2hu7a1 105 ----------RILSGVD--TGEAVVFTGATE----------------DRVALYALDGGG-L---RELARLP--GF---GF 147 (313)
T ss_dssp ----------EEEEEEE--CSSCEEEEEECS----------------SCEEEEEEETTE-E---EEEEEES--SC---EE
T ss_pred ----------EEEEeee--cCceEEEecccC----------------CceEEEEEeCCc-e---eeeccCC--Cc---ce
Confidence 2344444 889999885422 122344444321 1 1122222 11 22
Q ss_pred EEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCCCEEEEEEC-CCCCC
Q 003878 306 HVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTN-KDAPK 383 (789)
Q Consensus 306 ~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG~~l~~~tn-~~~~~ 383 (789)
.-.-.|++++-..--+. ....+++.|+.+|. ++-++.+-. ...+.+++..+- .++ ++...
T Consensus 148 VtDI~~d~I~G~g~~~g-~~~sfF~adl~SG~--------------lri~tpkeGS~~~ay~~~gnKV---~sdyEt~gE 209 (313)
T d2hu7a1 148 VSDIRGDLIAGLGFFGG-GRVSLFTSNLSSGG--------------LRVFDSGEGSFSSASISPGMKV---TAGLETARE 209 (313)
T ss_dssp EEEEETTEEEEEEEEET-TEEEEEEEETTTEE--------------EEEECCSSEEEEEEEECTTSCE---EEEEEESSC
T ss_pred EEeccCCeEEEEeeecC-CcceEEEEecccCC--------------EEEecCCCCcccceeEccCcee---eeccCCCCc
Confidence 22335777764332222 13458888886642 222222111 122446664443 222 22334
Q ss_pred ceEEEEECCCCCCeEEe-ccCCCC-----ceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEee
Q 003878 384 YKIIRVDLKEPNDWFEV-IPEAER-----DVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAIS 457 (789)
Q Consensus 384 ~~L~~~dl~~~~~~~~l-~~~~~~-----~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s 457 (789)
..++.+|+.+++ ...+ +|+.+- ..|.-+...++++|++...++|.+.|++ +|+. +..|.|.+....
T Consensus 210 sywit~D~~s~~-yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~----nGk~---in~p~G~~~gat 281 (313)
T d2hu7a1 210 ARLVTVDPRDGS-VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI----DGER---VEAPQGNHGRVV 281 (313)
T ss_dssp EEEEEECTTTCC-EEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE----TTEE---ECCCSSEEEEEE
T ss_pred eEEEEEecccCc-eeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee----cceE---ecCCCCcccceE
Confidence 556678888776 3333 344321 1222233557788999999999888873 3654 455667665543
Q ss_pred cccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 458 ARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 458 ~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
. =++.++++.+|..+|+.+..+ .+|
T Consensus 282 ~--i~~~iyfshsSL~tP~kI~~~--~~~ 306 (313)
T d2hu7a1 282 L--WRGKLVTSHTSLSTPPRIVSL--PSG 306 (313)
T ss_dssp E--ETTEEEEEEEETTEEEEEEEE--TTC
T ss_pred E--ECCEEEEeecccCCCceeEEc--CCC
Confidence 2 256799999999999998764 455
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.64 E-value=0.0022 Score=64.25 Aligned_cols=172 Identities=12% Similarity=0.087 Sum_probs=99.3
Q ss_pred EEeeeccccceeeeeeec----------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCC
Q 003878 216 YLFSLVKSTIYSFWSVVS----------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTK 285 (789)
Q Consensus 216 ~~~~s~~~g~~~l~~~~~----------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~ 285 (789)
+++.+..++...+|.+.. ........|+|+++.++....+ ..|+++++.+.
T Consensus 173 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-------------------~~i~i~d~~~~ 233 (355)
T d1nexb2 173 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD-------------------TTIRIWDLENG 233 (355)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETT-------------------SCEEEEETTTC
T ss_pred eeeeecccceeeeeecccccceeeeeccccccccccccccceeeeccccc-------------------ceEEeeecccc
Confidence 355556666666776533 2223567899999888876533 24778887654
Q ss_pred CCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEE
Q 003878 286 QSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEV 365 (789)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 365 (789)
.. +..+.. +...+..+.+ ++++|+.... ...|.++|+.++. . ..............
T Consensus 234 ~~--~~~~~~--h~~~v~~~~~--~~~~l~~~~~-----dg~i~iwd~~~~~------------~-~~~~~~~~~~~~~~ 289 (355)
T d1nexb2 234 EL--MYTLQG--HTALVGLLRL--SDKFLVSAAA-----DGSIRGWDANDYS------------R-KFSYHHTNLSAITT 289 (355)
T ss_dssp CE--EEEECC--CSSCCCEEEE--CSSEEEEECT-----TSEEEEEETTTCC------------E-EEEEECTTCCCCCE
T ss_pred cc--cccccc--cccccccccc--ccceeeeeec-----ccccccccccccc------------e-ecccccCCceEEEE
Confidence 32 222332 2222334555 4677765432 3458889988741 1 11111111111234
Q ss_pred EecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEEC
Q 003878 366 IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 366 ~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl 437 (789)
++++++.++ ... +..|..+|+++++.....+.. ....+..+++++ +.++++...||...|++||.
T Consensus 290 ~~~~~~~l~-~g~----d~~i~vwd~~tg~~~~~~~~~-~~~~V~~v~~~~-~~~~~~~s~dg~~~l~~~df 354 (355)
T d1nexb2 290 FYVSDNILV-SGS----ENQFNIYNLRSGKLVHANILK-DADQIWSVNFKG-KTLVAAVEKDGQSFLEILDF 354 (355)
T ss_dssp EEECSSEEE-EEE----TTEEEEEETTTCCBCCSCTTT-TCSEEEEEEEET-TEEEEEEESSSCEEEEEEEC
T ss_pred EcCCCCEEE-EEe----CCEEEEEECCCCCEEEEEecC-CCCCEEEEEEcC-CeEEEEEECCCcEEEEEEeC
Confidence 566666443 332 357999999987622222222 225678899987 78888889999878888875
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.61 E-value=0.015 Score=59.99 Aligned_cols=75 Identities=11% Similarity=0.098 Sum_probs=44.6
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE--EecCCCCeeEEEEEEecCCcEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC--WKDPEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~--~~~~~~~~~~~~~~~SpDG~~l~ 315 (789)
.+++|+|||+++|.... ...+|++++...... ...+ .........-..+.++|||++++
T Consensus 148 h~v~~sPdG~~l~v~d~------------------g~d~v~~~~~~~~g~-~~~~~~~~~~~~g~gPr~i~f~pdg~~~y 208 (365)
T d1jofa_ 148 HGMVFDPTETYLYSADL------------------TANKLWTHRKLASGE-VELVGSVDAPDPGDHPRWVAMHPTGNYLY 208 (365)
T ss_dssp EEEEECTTSSEEEEEET------------------TTTEEEEEEECTTSC-EEEEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred eEEEECCCCCEEEEeeC------------------CCCEEEEEEccCCCc-eeeccceeecCCCCceEEEEECCCCceEE
Confidence 47899999999987632 224577777654321 1111 11111112234688999999887
Q ss_pred EEEEcCCCCceEEEEEECCC
Q 003878 316 MCIEENCDPVNKVYYCDLSA 335 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~ 335 (789)
+.... .+.|.+++.++
T Consensus 209 v~~e~----~~~V~v~~~~~ 224 (365)
T d1jofa_ 209 ALMEA----GNRICEYVIDP 224 (365)
T ss_dssp EEETT----TTEEEEEEECT
T ss_pred EeccC----CCEEEEEEecC
Confidence 66532 35677777765
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.48 E-value=0.00019 Score=75.48 Aligned_cols=79 Identities=10% Similarity=0.072 Sum_probs=50.1
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEE---------EecCCCCeeEEEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILC---------WKDPEHPKYIFSGHV 307 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~---------~~~~~~~~~~~~~~~ 307 (789)
+..++|||||+.|+....+. ....|.+|++.++.....+. .....|...+.+++|
T Consensus 234 V~~l~~spdg~~l~sgs~D~----------------t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~f 297 (393)
T d1sq9a_ 234 IRSVKFSPQGSLLAIAHDSN----------------SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSF 297 (393)
T ss_dssp EEEEEECSSTTEEEEEEEET----------------TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEE
T ss_pred EEEcccccccceeeeecCCC----------------CcceeeecccccceeeeeeccccccccceeeeecccCceeeecc
Confidence 47899999999998765432 12346677776543211110 000123445778999
Q ss_pred ecCCcEEEEEEEcCCCCceEEEEEECCCC
Q 003878 308 TEDGQYLVMCIEENCDPVNKVYYCDLSAL 336 (789)
Q Consensus 308 SpDG~~l~~~~~~~~~~~~~i~~~d~~~g 336 (789)
||||++|+-.+. ...|.++|++++
T Consensus 298 spd~~~l~S~s~-----D~~v~vWd~~~g 321 (393)
T d1sq9a_ 298 NDSGETLCSAGW-----DGKLRFWDVKTK 321 (393)
T ss_dssp CSSSSEEEEEET-----TSEEEEEETTTT
T ss_pred CCCCCeeEEECC-----CCEEEEEECCCC
Confidence 999999875443 356999999885
|
| >d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Dog (Canis familiaris) [TaxId: 9615]
Probab=97.46 E-value=9e-05 Score=75.61 Aligned_cols=112 Identities=7% Similarity=-0.033 Sum_probs=73.8
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCC
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 614 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~ 614 (789)
+...|+++++||--+.............+|...++.|+++|++.+... .+..+. .+-...-+.+...+++|.+...
T Consensus 67 ~~~~pt~iiiHGw~~~~~~~~~~~~~~a~l~~~d~NVI~VDW~~~a~~--~Y~~a~--~n~~~Vg~~ia~~i~~l~~~~g 142 (337)
T d1rp1a2 67 QTDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGSQT--SYTQAA--NNVRVVGAQVAQMLSMLSANYS 142 (337)
T ss_dssp CTTSEEEEEECCCCCTTCTTHHHHHHHHHTTTCCEEEEEEECHHHHSS--CHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEeCCCcCCCCcchHHHHHHHHHhcCCceEEEEeeccccCc--chHHHH--HHHHHHHHHHHHHHHHHHHhcC
Confidence 457899999999755544333333446777756699999999764322 121111 0111112455556777777766
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCC
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVG 651 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p 651 (789)
+++++|.++|||+|+.+++.+..+ ......++..-|
T Consensus 143 ~~~~~vhlIGhSLGAhvAG~aG~~-~~~l~rItgLDP 178 (337)
T d1rp1a2 143 YSPSQVQLIGHSLGAHVAGEAGSR-TPGLGRITGLDP 178 (337)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHT-STTCCEEEEESC
T ss_pred CChhheEEEeecHHHhhhHHHHHh-hccccceeccCC
Confidence 799999999999999999977765 455666666554
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.39 E-value=0.0043 Score=60.93 Aligned_cols=153 Identities=8% Similarity=-0.032 Sum_probs=83.0
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEec-CCCCeeEEEEEEecCCcEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKD-PEHPKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~-~~~~~~~~~~~~SpDG~~l~ 315 (789)
....+.+|+++.+++...+. ..+..+++.... ..... ......+..++|||||++|+
T Consensus 121 ~~~~~~~~~~~~~~v~~~~~------------------~~v~~~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~ 178 (287)
T d1pgua2 121 SPGSAVSLSQNYVAVGLEEG------------------NTIQVFKLSDLE----VSFDLKTPLRAKPSYISISPSETYIA 178 (287)
T ss_dssp SCEEEEEECSSEEEEEETTT------------------SCEEEEETTEEE----EEEECSSCCSSCEEEEEECTTSSEEE
T ss_pred ceeeeeeccCcceeeecccc------------------ceeeeeeccccc----eeeeeeeccCCceeEEEeccCccccc
Confidence 34567888998888765432 236666654221 11111 11223356789999999998
Q ss_pred EEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEec----------CCCEEEEEECCCCCCc
Q 003878 316 MCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIAN----------DDTVFTFLTNKDAPKY 384 (789)
Q Consensus 316 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~----------dG~~l~~~tn~~~~~~ 384 (789)
....+ ..|.++|+.++... ............ ..|+| ++..|+ .. +.+.
T Consensus 179 ~g~~d-----g~i~i~d~~~~~~~------------~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~-sg---s~D~ 237 (287)
T d1pgua2 179 AGDVM-----GKILLYDLQSREVK------------TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVA-TG---SLDT 237 (287)
T ss_dssp EEETT-----SCEEEEETTTTEEE------------ECCSCCCSSCEEEEEECCCC------CCSCCEEE-EE---ETTS
T ss_pred ccccc-----ccccceeecccccc------------cccccccccccceeeecccccccccccCCCCeeE-ee---cCCC
Confidence 76543 34888898764210 000000000011 12444 344433 22 2246
Q ss_pred eEEEEECCCCCC-eEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEEC
Q 003878 385 KIIRVDLKEPND-WFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDL 437 (789)
Q Consensus 385 ~L~~~dl~~~~~-~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl 437 (789)
.|+.+++..+.. ...+..+. ..+..+.+.+++. +++...|+ .|++|++
T Consensus 238 ~i~iw~~~~~~~~~~~~~~h~--~~V~~v~~~~~~~-l~s~g~D~--~v~iW~i 286 (287)
T d1pgua2 238 NIFIYSVKRPMKIIKALNAHK--DGVNNLLWETPST-LVSSGADA--CIKRWNV 286 (287)
T ss_dssp CEEEEESSCTTCCEEETTSST--TCEEEEEEEETTE-EEEEETTS--CEEEEEE
T ss_pred eEEEEECCCCCeEEEEeCCCC--CCeEEEEECCCCE-EEEEECCC--eEEEEEE
Confidence 788999876542 33333343 4578899888554 56677776 5666763
|
| >d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.35 E-value=0.00068 Score=67.22 Aligned_cols=107 Identities=12% Similarity=0.024 Sum_probs=60.9
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcC--CeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHc
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHL--GAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISA 612 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~--G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~ 612 (789)
..+.| ||++||-.++...+.-......++.++ |+.|..+++..+.. ..... .......+.++.+...+++
T Consensus 3 ~~P~P-VVLvHGlg~s~~~~~~m~~l~~~l~~~~pG~~V~~l~~g~~~~---~~~~~----~~~~~~~~~~e~v~~~I~~ 74 (279)
T d1ei9a_ 3 PAPLP-LVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTLR---EDVEN----SFFLNVNSQVTTVCQILAK 74 (279)
T ss_dssp TSSCC-EEEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCCSSSHH---HHHHH----HHHSCHHHHHHHHHHHHHS
T ss_pred CCCCc-EEEECCCCCCCCChHHHHHHHHHHHHHCCCeEEEEEEcCCCcc---ccccc----chhhhHHHHHHHHHHHHHh
Confidence 45667 558899766544443233345566544 88888888643211 00000 0011234444444444443
Q ss_pred CCCCCCcEEEEeeChHHHHHHHHHHhCCC-ceeEEEec
Q 003878 613 GYTQSRKLCIEGGSNGGLLVGACINQRPD-LFGCALAH 649 (789)
Q Consensus 613 ~~~d~~~i~i~G~S~GG~l~~~~~~~~pd-~f~a~v~~ 649 (789)
--.-.+++-++|||+||+++-+++.+.++ .....|+.
T Consensus 75 ~~~~~~~v~lVGhSqGGLiaR~~i~~~~~~~V~~lITL 112 (279)
T d1ei9a_ 75 DPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISV 112 (279)
T ss_dssp CGGGTTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEE
T ss_pred ccccccceeEEEEccccHHHHHHHHHcCCCCcceEEEE
Confidence 22234689999999999999999988875 34555543
|
| >d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.29 E-value=0.00016 Score=73.54 Aligned_cols=115 Identities=10% Similarity=-0.026 Sum_probs=76.9
Q ss_pred CCCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHHHHHHHHcCC
Q 003878 535 DGSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISASEYLISAGY 614 (789)
Q Consensus 535 ~~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~~~ 614 (789)
+...|+++++||--+.............+|....+.|+++|++.+... .+..+. ... ...=..+...++.|.....
T Consensus 67 ~~~~pt~iiiHG~~~~~~~~~~~~~~~a~l~~~d~NVi~VDW~~~a~~--~Y~~a~-~n~-~~Vg~~ia~~i~~l~~~~g 142 (338)
T d1bu8a2 67 QLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSRT--EYTQAS-YNT-RVVGAEIAFLVQVLSTEMG 142 (338)
T ss_dssp CTTSEEEEEECCSCCTTCTTHHHHHHHHHHTTCCEEEEEEECHHHHSS--CHHHHH-HHH-HHHHHHHHHHHHHHHHHHC
T ss_pred CCCCceEEEeCcccCCCCcccHHHHHHHHHhcCCceEEEEechhhccc--chHHHH-HhH-HHHHHHHHHHHHHHHHhcC
Confidence 467899999999655444433334456778766799999998764332 122221 110 1111334446666666656
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhCCCceeEEEecCCcc
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQRPDLFGCALAHVGVM 653 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~~pd~f~a~v~~~p~~ 653 (789)
+++++|-++|||.|+.+++.+..+-+.+...++..-|..
T Consensus 143 ~~~~~vhlIGhSLGAhiaG~ag~~l~~kigrItgLDPA~ 181 (338)
T d1bu8a2 143 YSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (338)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCcceeEEEeccHHHHHHHHHHHhhccccccccccccCc
Confidence 799999999999999999999987777777777665543
|
| >d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Erythromycin polyketide synthase species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=97.20 E-value=0.00052 Score=67.69 Aligned_cols=100 Identities=14% Similarity=0.050 Sum_probs=62.7
Q ss_pred CCccEEEEEcCCCCccCCCCCCHHHHHHHHcCCeEEEEEeecCCCCCChhHHhcccccCCcchHHHHHHH-HHHHHHcCC
Q 003878 536 GSHPCLLYGYGGFNISVTPSFSVSRTILMRHLGAVFCIANIRGGGEYGEEWHKGGALAKKQNCFDDFISA-SEYLISAGY 614 (789)
Q Consensus 536 ~~~P~ll~~hGg~~~~~~~~~~~~~~~~l~~~G~~v~~~~~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~-~~~L~~~~~ 614 (789)
+..|.|+++||.++......|.. +...|. ..+.|+.++.+|.+. .+....+++++.+. ++.+.+.
T Consensus 40 ~~~~~l~c~~~~~~gg~~~~y~~-La~~L~-~~~~V~al~~pG~~~----------~e~~~~s~~~~a~~~~~~i~~~-- 105 (255)
T d1mo2a_ 40 PGEVTVICCAGTAAISGPHEFTR-LAGALR-GIAPVRAVPQPGYEE----------GEPLPSSMAAVAAVQADAVIRT-- 105 (255)
T ss_dssp SCSSEEEEECCCSSSCSGGGGHH-HHHHHT-TTCCEEEECCTTSST----------TCCEESSHHHHHHHHHHHHHHT--
T ss_pred CCCCeEEEECCCCCCCCHHHHHH-HHHhcC-CCceEEEEeCCCcCC----------CCCCCCCHHHHHHHHHHHHHHh--
Confidence 45688999998543333344543 455665 568899999988542 11223456666554 3444443
Q ss_pred CCCCcEEEEeeChHHHHHHHHHHhC---CCceeEEEec
Q 003878 615 TQSRKLCIEGGSNGGLLVGACINQR---PDLFGCALAH 649 (789)
Q Consensus 615 ~d~~~i~i~G~S~GG~l~~~~~~~~---pd~f~a~v~~ 649 (789)
.....+.++|||+||.++..++.+. .+....+|+.
T Consensus 106 ~~~~P~~L~GhS~Gg~vA~e~A~~l~~~g~~v~~lvll 143 (255)
T d1mo2a_ 106 QGDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLI 143 (255)
T ss_dssp TSSSCEEEEECSTTHHHHHHHHHHHHHHTCCCSEEEEE
T ss_pred CCCCCEEEEEeCCcHHHHHHHHHhhHhcCCCccEEEEE
Confidence 2235799999999999999888754 3335555544
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=97.08 E-value=0.11 Score=47.72 Aligned_cols=209 Identities=12% Similarity=0.092 Sum_probs=123.2
Q ss_pred EEEeeeccccceeeeeeec----ccccceEEEEeCC----cEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCC
Q 003878 215 FYLFSLVKSTIYSFWSVVS----QFKFSSIAWTHDS----KGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ 286 (789)
Q Consensus 215 ~~~~~s~~~g~~~l~~~~~----~~~~~~~~wspDg----~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~ 286 (789)
.++|.+-.+|.-|++.+.. .+.-..++.+++- ..|.|.|.... ....+.+|..++-.+.
T Consensus 27 ~ll~~~~seG~vni~~l~g~~~vkLtkePI~~~~~Pk~~ldfi~f~RDV~k-------------GkE~Hai~~~Nlk~~G 93 (313)
T d2hu7a1 27 KLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSK-------------GAEQHALFKVNTSRPG 93 (313)
T ss_dssp EEEEEEEETTEEEEEEESSSSCEECCSSCCSEECEECTTBSEEEEEEECST-------------TSCCEEEEEEETTSTT
T ss_pred cEEEEEeccceEEEEEEeCCEEEEEecccccCcCCCccCcceEEEEeehhc-------------CcceeeEEEEccCCCC
Confidence 5788888888889988766 2322334444332 36777776542 2345678888886544
Q ss_pred CCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec--cccceeE
Q 003878 287 SEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID--GFDAQYE 364 (789)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~--~~~~~~~ 364 (789)
++.. .+.+. +..+.++ .-|++.++|.....+ ...+|+++ +|+ ++++.. ++ .
T Consensus 94 EE~~--i~spk-~vRI~S~--~yddk~vvF~Gased--~~~LYvie--gGk--------------lrkL~~vPpF----s 146 (313)
T d2hu7a1 94 EEQR--LEAVK-PMRILSG--VDTGEAVVFTGATED--RVALYALD--GGG--------------LRELARLPGF----G 146 (313)
T ss_dssp CEEE--CTTSC-SBEEEEE--EECSSCEEEEEECSS--CEEEEEEE--TTE--------------EEEEEEESSC----E
T ss_pred eeeE--ecCCc-eEEEEEe--eecCceEEEecccCC--ceEEEEEe--CCc--------------eeeeccCCCc----c
Confidence 4422 12222 4555444 458999999876543 45677765 332 333332 22 1
Q ss_pred EEe-cCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCcee
Q 003878 365 VIA-NDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLL 443 (789)
Q Consensus 365 ~~s-~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~ 443 (789)
+++ -.|+++.=+.--.+....++..|+.++. .+.+.|.. ..+......+++++..-+..-+.+....+|+++++.
T Consensus 147 FVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~-lri~tpke--GS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~y- 222 (313)
T d2hu7a1 147 FVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-LRVFDSGE--GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV- 222 (313)
T ss_dssp EEEEEETTEEEEEEEEETTEEEEEEEETTTEE-EEEECCSS--EEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCE-
T ss_pred eEEeccCCeEEEEeeecCCcceEEEEecccCC-EEEecCCC--CcccceeEccCceeeeccCCCCceEEEEEecccCce-
Confidence 221 1456655332222334558889997776 66666554 566777777867776556666777777889997776
Q ss_pred eecccCCe--------eEEEeecccCCcEEEE
Q 003878 444 HQLPIEIG--------SVNAISARREDSVVFI 467 (789)
Q Consensus 444 ~~l~~~~~--------~v~~~s~s~d~~~l~~ 467 (789)
.++.+|.. .+..+...|+++.+.+
T Consensus 223 erve~P~kd~~sy~p~~I~~~~Y~Pdd~L~ii 254 (313)
T d2hu7a1 223 EDLELPSKDFSSYRPTAITWLGYLPDGRLAVV 254 (313)
T ss_dssp EECCCSSCHHHHHCCSEEEEEEECTTSCEEEE
T ss_pred eeeecCcccceeecceEEEeeeeCCCCcEEEE
Confidence 77877732 2334445677665444
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.05 E-value=0.14 Score=49.85 Aligned_cols=200 Identities=12% Similarity=0.027 Sum_probs=112.8
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCC--CCcEEEE-ecCCCCeeEEEEEEecCCcEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQ--SEDILCW-KDPEHPKYIFSGHVTEDGQYL 314 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~--~~~~~~~-~~~~~~~~~~~~~~SpDG~~l 314 (789)
.++.|.+..+.||++-. ....|++.++.... .....+. .....+ .++++.+-++.|
T Consensus 33 ~~id~d~~~~~lYw~D~------------------~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p---~glAvD~~~~~l 91 (266)
T d1ijqa1 33 VALDTEVASNRIYWSDL------------------SQRMICSTQLDRAHGVSSYDTVISRDIQAP---DGLAVDWIHSNI 91 (266)
T ss_dssp EEEEEETTTTEEEEEET------------------TTTEEEEEEC--------CEEEECSSCSCC---CEEEEETTTTEE
T ss_pred EEEEEEeCCCEEEEEEC------------------CCCEEEEEEecCCCCCcceEEEEeCCCCCc---ceEEEeeccceE
Confidence 56778888899988732 12357777764321 1122222 221222 356777788888
Q ss_pred EEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccc-ceeEEEecCCCEEEEEECCCCCCceEEEEECCC
Q 003878 315 VMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFD-AQYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE 393 (789)
Q Consensus 315 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~ 393 (789)
++.... ...|.+.++++.. ....+..... ...-.+.|....+|+... +...+|+++++++
T Consensus 92 Y~~d~~----~~~I~v~~~~g~~-------------~~~~~~~~~~~P~~l~vd~~~g~ly~~~~--~~~~~I~r~~~dG 152 (266)
T d1ijqa1 92 YWTDSV----LGTVSVADTKGVK-------------RKTLFRENGSKPRAIVVDPVHGFMYWTDW--GTPAKIKKGGLNG 152 (266)
T ss_dssp EEEETT----TTEEEEEETTSSS-------------EEEEEECTTCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTS
T ss_pred EEEecC----CCEEEeEecCCce-------------EEEEEcCCCCCcceEEEEcccCeEEEecc--CCCcceeEeccCC
Confidence 875422 4568999987631 1111222211 112235676778887643 2457899999988
Q ss_pred CCCeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceeeecc-cC--CeeEEEeecccCCcEEEEEE
Q 003878 394 PNDWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLP-IE--IGSVNAISARREDSVVFISF 469 (789)
Q Consensus 394 ~~~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~-~~--~~~v~~~s~s~d~~~l~~~~ 469 (789)
.. .+.++...- ....++++.. +++||+.-.. ...|..++++ |...+.+. .. .....+++. +++.++++-
T Consensus 153 s~-~~~l~~~~~-~~p~gl~iD~~~~~lYw~d~~--~~~I~~~~~d-G~~~~~~~~~~~~~~~p~~lav--~~~~ly~td 225 (266)
T d1ijqa1 153 VD-IYSLVTENI-QWPNGITLDLLSGRLYWVDSK--LHSISSIDVN-GGNRKTILEDEKRLAHPFSLAV--FEDKVFWTD 225 (266)
T ss_dssp CC-EEEEECSSC-SCEEEEEEETTTTEEEEEETT--TTEEEEEETT-SCSCEEEEECTTTTSSEEEEEE--ETTEEEEEE
T ss_pred Cc-eeccccccc-ceeeEEEeeccccEEEEecCC--cCEEEEEECC-CCCEEEEEeCCCcccccEEEEE--ECCEEEEEE
Confidence 65 455665442 3456788875 3678876433 3489999997 44323332 11 111223443 356777653
Q ss_pred cCCCCCcEEEEEECCCCC
Q 003878 470 TSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 470 ss~~~P~~ly~~dl~tg~ 487 (789)
.....+++++..+++
T Consensus 226 ---~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 226 ---IINEAIFSANRLTGS 240 (266)
T ss_dssp ---TTTTEEEEEETTTCC
T ss_pred ---CCCCeEEEEECCCCc
Confidence 245789999987775
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.01 E-value=0.039 Score=56.65 Aligned_cols=29 Identities=10% Similarity=0.048 Sum_probs=19.3
Q ss_pred EEeEEeCCCCcEEEEEEecCCceEEEEEEEEcC
Q 003878 134 LIKVSVSEDAKYLAYALSYSGSDWATIKLMRIE 166 (789)
Q Consensus 134 ~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~ 166 (789)
+.++.+||||++|.. .+ .|.+ .|++++..
T Consensus 147 ~h~v~~sPdG~~l~v-~d-~g~d--~v~~~~~~ 175 (365)
T d1jofa_ 147 IHGMVFDPTETYLYS-AD-LTAN--KLWTHRKL 175 (365)
T ss_dssp EEEEEECTTSSEEEE-EE-TTTT--EEEEEEEC
T ss_pred ceEEEECCCCCEEEE-ee-CCCC--EEEEEEcc
Confidence 457889999999854 44 3433 46666544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=96.97 E-value=0.19 Score=49.95 Aligned_cols=119 Identities=9% Similarity=0.059 Sum_probs=66.8
Q ss_pred ceEEEEeCCc----EEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC-CcEEEE-ecCC-CCeeEEEEEEecC
Q 003878 238 SSIAWTHDSK----GFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS-EDILCW-KDPE-HPKYIFSGHVTED 310 (789)
Q Consensus 238 ~~~~wspDg~----~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~-~~~~~~-~~~~-~~~~~~~~~~SpD 310 (789)
.+++|+||++ .||++. ....+|+++++..+.. ....++ ..+. ......++++.++
T Consensus 175 NGi~~~~d~d~~~~~lyv~d------------------~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~ 236 (314)
T d1pjxa_ 175 NGIAVRHMNDGRPYQLIVAE------------------TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDED 236 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEE------------------TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTT
T ss_pred eeeEECCCCCcceeEEEEEe------------------ecccceEEeeccCccccceeeEEEEccccccccceeeEEecC
Confidence 4789999876 465542 2335688877653321 111122 2111 1122346788999
Q ss_pred CcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-cccceeEEEecCCCEEEEEECCCCCCceEEEE
Q 003878 311 GQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQYEVIANDDTVFTFLTNKDAPKYKIIRV 389 (789)
Q Consensus 311 G~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~dG~~l~~~tn~~~~~~~L~~~ 389 (789)
|+ |++.... ...|++++.+++. ....+.. ........|.+|+++||+.+.. +++|+++
T Consensus 237 Gn-lyVa~~~----~g~I~~~dp~~g~-------------~~~~i~~p~~~~t~~afg~d~~~lyVt~~~---~g~i~~~ 295 (314)
T d1pjxa_ 237 NN-LLVANWG----SSHIEVFGPDGGQ-------------PKMRIRCPFEKPSNLHFKPQTKTIFVTEHE---NNAVWKF 295 (314)
T ss_dssp CC-EEEEEET----TTEEEEECTTCBS-------------CSEEEECSSSCEEEEEECTTSSEEEEEETT---TTEEEEE
T ss_pred Cc-EEEEEcC----CCEEEEEeCCCCE-------------EEEEEECCCCCEEEEEEeCCCCEEEEEECC---CCcEEEE
Confidence 97 4444322 3679999877642 1111111 1122234578999999886643 4789999
Q ss_pred ECCCCC
Q 003878 390 DLKEPN 395 (789)
Q Consensus 390 dl~~~~ 395 (789)
++..+.
T Consensus 296 ~~~~~G 301 (314)
T d1pjxa_ 296 EWQRNG 301 (314)
T ss_dssp ECSSCB
T ss_pred ECCCCC
Confidence 986643
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.94 E-value=0.044 Score=53.60 Aligned_cols=235 Identities=7% Similarity=-0.053 Sum_probs=111.5
Q ss_pred EEEEeEEeCCCCcEEEEEEecCCceEEEEEEEEcCCCceecccccccccccccCccceeeeeeccccccccccccccccc
Q 003878 132 AALIKVSVSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEADALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGI 211 (789)
Q Consensus 132 ~~~~~~~~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 211 (789)
..+..++|+|++..++++....| +|++|++.++........... . ........+..
T Consensus 57 ~~V~~v~f~~~~~~~l~sg~~d~----~v~~w~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~~--------- 112 (342)
T d1yfqa_ 57 HPLLCCNFIDNTDLQIYVGTVQG----EILKVDLIGSPSFQALTNNEA-----N------LGICRICKYGD--------- 112 (342)
T ss_dssp SCEEEEEEEESSSEEEEEEETTS----CEEEECSSSSSSEEECBSCCC-----C------SCEEEEEEETT---------
T ss_pred CCEEEEEEeCCCCCEEEEccccc----ceeeeeccccccccccccccc-----c------ccccccccccc---------
Confidence 34778899998776655544444 799999988754331111100 0 00000011111
Q ss_pred eeeEEEeeeccccceeeeeeec----------------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCccc
Q 003878 212 FFFFYLFSLVKSTIYSFWSVVS----------------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYH 275 (789)
Q Consensus 212 ~~~~~~~~s~~~g~~~l~~~~~----------------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~ 275 (789)
..+.....+++..+|.+.. ......+.+.+++..++....+ .
T Consensus 113 ---~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-------------------~ 170 (342)
T d1yfqa_ 113 ---DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNN-------------------S 170 (342)
T ss_dssp ---TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEEST-------------------T
T ss_pred ---ccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCC-------------------C
Confidence 2345556677778885432 1112345667777777655332 3
Q ss_pred EEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEe-
Q 003878 276 EFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVK- 354 (789)
Q Consensus 276 ~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~- 354 (789)
.+..+++.+.......................+.++..++..+.+ ..+.+++........ ... .......
T Consensus 171 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d-----g~~~v~~~~~~~~~~-~~~---~~~~~~~~ 241 (342)
T d1yfqa_ 171 QVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID-----GRVAVEFFDDQGDDY-NSS---KRFAFRCH 241 (342)
T ss_dssp EEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT-----SEEEEEECCTTCCST-TCT---TCEEEECC
T ss_pred cEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCC-----CeEEEEEecCCccee-ecc---ccceeeee
Confidence 577888876554433333332222222223334555665554432 234444444321100 000 0000000
Q ss_pred --e---eccccce-eEEEecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeC
Q 003878 355 --L---IDGFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSD 427 (789)
Q Consensus 355 --l---~~~~~~~-~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~ 427 (789)
. ....... -..|+|+|+.|+..+ .++.|..+|+++++....+ +......+..+++.+ +.+++...++
T Consensus 242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~----~Dg~v~vWD~~~~~~l~~~-~~~~~~~~~~~s~~~-~~l~~a~sdd 314 (342)
T d1yfqa_ 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAG----SDGIISCWNLQTRKKIKNF-AKFNEDSVVKIACSD-NILCLATSDD 314 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEE----TTSCEEEEETTTTEEEEEC-CCCSSSEEEEEEECS-SEEEEEEECT
T ss_pred eeccCCCcccccceeEEecCCccEEEEEC----CCCEEEEEECCCCcEEEEe-cCCCCCEEEEEEeCC-CEEEEEEcCC
Confidence 0 0000001 124899998776433 3467999999887633333 322234455555544 5555544443
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.84 E-value=0.051 Score=53.27 Aligned_cols=175 Identities=11% Similarity=-0.010 Sum_probs=101.8
Q ss_pred Eeeeccccceeeeeeec--------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCC
Q 003878 217 LFSLVKSTIYSFWSVVS--------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSE 288 (789)
Q Consensus 217 ~~~s~~~g~~~l~~~~~--------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~ 288 (789)
++.+..+|...+|.... ........+++|++.|+....+ ..|+++++.+..
T Consensus 150 ~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-------------------g~i~~~d~~~~~-- 208 (342)
T d2ovrb2 150 VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLD-------------------TSIRVWDVETGN-- 208 (342)
T ss_dssp EEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETT-------------------SCEEEEETTTCC--
T ss_pred eeeecCCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCC-------------------CeEEEeecccce--
Confidence 45566677777776544 1123456777888887765432 248888886543
Q ss_pred cEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccc--cceeEEE
Q 003878 289 DILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGF--DAQYEVI 366 (789)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~ 366 (789)
.+..+. .+..... .+++++++|+..+. ...|+++++.... ....+.... ......+
T Consensus 209 ~~~~~~--~~~~~v~--~~~~~~~~l~s~s~-----d~~i~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~ 266 (342)
T d2ovrb2 209 CIHTLT--GHQSLTS--GMELKDNILVSGNA-----DSTVKIWDIKTGQ-------------CLQTLQGPNKHQSAVTCL 266 (342)
T ss_dssp EEEEEC--CCCSCEE--EEEEETTEEEEEET-----TSCEEEEETTTCC-------------EEEEECSTTSCSSCEEEE
T ss_pred eeeEec--cccccee--EEecCCCEEEEEcC-----CCEEEEEeccccc-------------ccccccccceeeeceeec
Confidence 222222 2233333 34556777766543 2448888987632 111221111 1122235
Q ss_pred ecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccC---CCCceeeeEEEecCCEEEEEEEeCCe--EEEEEEECC
Q 003878 367 ANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPE---AERDVLESATAVNLNQMIVSYLSDVK--YVLQIRDLK 438 (789)
Q Consensus 367 s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~---~~~~~i~~v~~~~~~~lv~~~~~~g~--~~L~~~dl~ 438 (789)
+.+++.++..+ .++.|..+|+.+++..+.+... .....+..+++++++.++++...+|. .+|++||++
T Consensus 267 ~~~~~~~~s~s----~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 267 QFNKNFVITSS----DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp EECSSEEEEEE----TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred ccCCCeeEEEc----CCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 56677665433 2468999999988733444321 12346888999986677788888873 589999986
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.68 E-value=0.027 Score=56.69 Aligned_cols=160 Identities=9% Similarity=0.036 Sum_probs=94.1
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecc-ccceeEEEecCCCEEEEEECCC
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDG-FDAQYEVIANDDTVFTFLTNKD 380 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~s~dG~~l~~~tn~~ 380 (789)
..+++|.+||+ |++.-. ...+|+.++.+++. ........ ....-..+++||+ ||+....+
T Consensus 42 lEG~~~D~~G~-Ly~~D~----~~g~I~ri~p~g~~-------------~~~~~~~~~~~p~gla~~~dG~-l~va~~~~ 102 (319)
T d2dg1a1 42 LEGLNFDRQGQ-LFLLDV----FEGNIFKINPETKE-------------IKRPFVSHKANPAAIKIHKDGR-LFVCYLGD 102 (319)
T ss_dssp EEEEEECTTSC-EEEEET----TTCEEEEECTTTCC-------------EEEEEECSSSSEEEEEECTTSC-EEEEECTT
T ss_pred cEeCEECCCCC-EEEEEC----CCCEEEEEECCCCe-------------EEEEEeCCCCCeeEEEECCCCC-EEEEecCC
Confidence 46889999997 665432 14679999877632 01111111 1111123678886 45444322
Q ss_pred -CCCceEEEEECCCCCCeEEeccC-CCCceeeeEEEecCCEEEEEEEeC----CeEEEEEEECCCCceeeecccCCeeEE
Q 003878 381 -APKYKIIRVDLKEPNDWFEVIPE-AERDVLESATAVNLNQMIVSYLSD----VKYVLQIRDLKNGSLLHQLPIEIGSVN 454 (789)
Q Consensus 381 -~~~~~L~~~dl~~~~~~~~l~~~-~~~~~i~~v~~~~~~~lv~~~~~~----g~~~L~~~dl~tG~~~~~l~~~~~~v~ 454 (789)
.....|+.++..+.. ...++.. .......++.+.+++.+++..... ....+++++.+ |+..+.+..+.....
T Consensus 103 ~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~~~pn 180 (319)
T d2dg1a1 103 FKSTGGIFAATENGDN-LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNISVAN 180 (319)
T ss_dssp SSSCCEEEEECTTSCS-CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEESSEE
T ss_pred CccceeEEEEcCCCce-eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc-cceeEEEeeccceee
Confidence 234678888877665 4444432 222345677788777888765432 23478888887 443344433323345
Q ss_pred EeecccCCcEEEEEEcCCCCCcEEEEEECCC
Q 003878 455 AISARREDSVVFISFTSFLIPGIVYQCNLKT 485 (789)
Q Consensus 455 ~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~t 485 (789)
++.+++|++.++++-+ ...+|++|+++.
T Consensus 181 Gia~s~dg~~lyvad~---~~~~I~~~d~~~ 208 (319)
T d2dg1a1 181 GIALSTDEKVLWVTET---TANRLHRIALED 208 (319)
T ss_dssp EEEECTTSSEEEEEEG---GGTEEEEEEECT
T ss_pred eeeeccccceEEEecc---cCCceEEEEEcC
Confidence 6788999998887542 456899998753
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.60 E-value=0.29 Score=48.05 Aligned_cols=191 Identities=10% Similarity=-0.012 Sum_probs=108.4
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.++.|.+++..|+++-. ...+|++++..++. ..++..+.. ...+.+.+||+.++.
T Consensus 21 Egp~wd~~~~~l~wvDi------------------~~~~I~r~d~~~g~---~~~~~~~~~---~~~i~~~~dg~l~va- 75 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNI------------------LERELHELHLASGR---KTVHALPFM---GSALAKISDSKQLIA- 75 (295)
T ss_dssp EEEEEETTTTEEEEEEG------------------GGTEEEEEETTTTE---EEEEECSSC---EEEEEEEETTEEEEE-
T ss_pred eCCeEECCCCEEEEEEC------------------CCCEEEEEECCCCe---EEEEECCCC---cEEEEEecCCCEEEE-
Confidence 68999998889998732 34569999887653 345555432 346778899977653
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec---ccc---ceeEEEecCCCEEEEEEC-C--CCCCceEEE
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID---GFD---AQYEVIANDDTVFTFLTN-K--DAPKYKIIR 388 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~---~~~---~~~~~~s~dG~~l~~~tn-~--~~~~~~L~~ 388 (789)
. ...++++|.++++ +..+.. +.. .....+.++|+ |++.+. . ..+...+++
T Consensus 76 ~------~~gl~~~d~~tg~--------------~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~ 134 (295)
T d2ghsa1 76 S------DDGLFLRDTATGV--------------LTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYH 134 (295)
T ss_dssp E------TTEEEEEETTTCC--------------EEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEE
T ss_pred E------eCccEEeecccce--------------eeEEeeeecCCCcccceeeEECCCCC-EEEEeccccccccceeEee
Confidence 2 2358999988753 111111 100 11234678886 555543 2 223456776
Q ss_pred EECCCCCCeEEeccCCCCceeeeEEEecCC-EEEEEEEeCCeEEEEEEECCC--Cc----eeeeccc--CCeeEEEeecc
Q 003878 389 VDLKEPNDWFEVIPEAERDVLESATAVNLN-QMIVSYLSDVKYVLQIRDLKN--GS----LLHQLPI--EIGSVNAISAR 459 (789)
Q Consensus 389 ~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~-~lv~~~~~~g~~~L~~~dl~t--G~----~~~~l~~--~~~~v~~~s~s 459 (789)
.+ .++ .+.+...- ..-.++.+++++ .++++.... ..|+.++++. +. ....+.. ..+...++..+
T Consensus 135 ~~--~g~-~~~~~~~~--~~~Ng~~~s~d~~~l~~~dt~~--~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD 207 (295)
T d2ghsa1 135 VA--KGK-VTKLFADI--SIPNSICFSPDGTTGYFVDTKV--NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD 207 (295)
T ss_dssp EE--TTE-EEEEEEEE--SSEEEEEECTTSCEEEEEETTT--CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC
T ss_pred ec--CCc-EEEEeecc--CCcceeeecCCCceEEEeeccc--ceeeEeeecccccccccceEEEeccCcccccccceEEc
Confidence 65 333 44444322 233577888754 466554433 4788887652 11 1011111 24455677788
Q ss_pred cCCcEEEEEEcCCCCCcEEEEEECCC
Q 003878 460 REDSVVFISFTSFLIPGIVYQCNLKT 485 (789)
Q Consensus 460 ~d~~~l~~~~ss~~~P~~ly~~dl~t 485 (789)
.+++ +++..- ..+.|++||.+.
T Consensus 208 ~~Gn-lWva~~---~~g~V~~~dp~G 229 (295)
T d2ghsa1 208 AEGH-IWNARW---GEGAVDRYDTDG 229 (295)
T ss_dssp TTSC-EEEEEE---TTTEEEEECTTC
T ss_pred CCCC-EEeeee---CCCceEEecCCC
Confidence 8887 554431 246899999653
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=96.57 E-value=0.08 Score=52.39 Aligned_cols=195 Identities=11% Similarity=0.023 Sum_probs=100.7
Q ss_pred cceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEE
Q 003878 237 FSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVM 316 (789)
Q Consensus 237 ~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~ 316 (789)
..+++++|||+ ||++.. ...+|++++.+.. ...+...+ ....++++++||+.++.
T Consensus 30 ~e~iAv~pdG~-l~vt~~------------------~~~~I~~i~p~g~---~~~~~~~~---~~~~gla~~~dG~l~v~ 84 (302)
T d2p4oa1 30 LENLASAPDGT-IFVTNH------------------EVGEIVSITPDGN---QQIHATVE---GKVSGLAFTSNGDLVAT 84 (302)
T ss_dssp EEEEEECTTSC-EEEEET------------------TTTEEEEECTTCC---EEEEEECS---SEEEEEEECTTSCEEEE
T ss_pred cCCEEECCCCC-EEEEeC------------------CCCEEEEEeCCCC---EEEEEcCC---CCcceEEEcCCCCeEEE
Confidence 36899999997 666632 2346888775432 22333332 33567899999995444
Q ss_pred EEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec--cccc-eeEEEecCCCEEEEEECCCCCCceEEEEECCC
Q 003878 317 CIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID--GFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKE 393 (789)
Q Consensus 317 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~--~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~ 393 (789)
.. .. ..++.++..... .. ...+.. .... .-..+.++| .+|+... .+.++++++..+
T Consensus 85 ~~-~~----~~~~~~~~~~~~-----------~~-~~~~~~~~~~~~~n~i~~~~~g-~~~v~~~---~~~~i~~~~~~~ 143 (302)
T d2p4oa1 85 GW-NA----DSIPVVSLVKSD-----------GT-VETLLTLPDAIFLNGITPLSDT-QYLTADS---YRGAIWLIDVVQ 143 (302)
T ss_dssp EE-CT----TSCEEEEEECTT-----------SC-EEEEEECTTCSCEEEEEESSSS-EEEEEET---TTTEEEEEETTT
T ss_pred ec-CC----ceEEEEEecccc-----------cc-eeeccccCCccccceeEEccCC-CEEeecc---ccccceeeeccC
Confidence 33 22 224444443311 00 111211 1111 112356666 4554332 356889998876
Q ss_pred CCCeEEecc----------CCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeeccc--CCeeEEEeecccC
Q 003878 394 PNDWFEVIP----------EAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPI--EIGSVNAISARRE 461 (789)
Q Consensus 394 ~~~~~~l~~----------~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~--~~~~v~~~s~s~d 461 (789)
+. ..+.. ........++.+.. +.+++....++ +|+.++.+.......... ......++.++++
T Consensus 144 ~~--~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~d 218 (302)
T d2p4oa1 144 PS--GSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKM--LLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVE 218 (302)
T ss_dssp TE--EEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTT--EEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTT
T ss_pred Cc--ceeEecCCccceeeccCcccccccccccC-CceeeecCCCC--eEEeccccccccccccccccCCCCCcceEECCC
Confidence 64 11111 11112234566665 77777666554 889998864332111110 1112234567788
Q ss_pred CcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 462 DSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 462 ~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
++ ++++-. ...++++++.+.+
T Consensus 219 G~-l~va~~---~~~~V~~i~p~G~ 239 (302)
T d2p4oa1 219 GN-LYGATH---IYNSVVRIAPDRS 239 (302)
T ss_dssp CC-EEEECB---TTCCEEEECTTCC
T ss_pred CC-EEEEEc---CCCcEEEECCCCC
Confidence 87 555432 2357899987644
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.42 E-value=0.32 Score=46.63 Aligned_cols=150 Identities=11% Similarity=0.075 Sum_probs=78.4
Q ss_pred EEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccc-eeEEEecCCCEEEEEECCC
Q 003878 302 IFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDA-QYEVIANDDTVFTFLTNKD 380 (789)
Q Consensus 302 ~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dG~~l~~~tn~~ 380 (789)
..+++++++|+..+ .. .. ...++.++..+.. . ......+... .--.++++|+ +|+...
T Consensus 100 p~~iavd~~g~i~v-~d-~~---~~~~~~~~~~~~~------------~-~~~~~~~~~~p~~i~~~~~g~-~~v~~~-- 158 (260)
T d1rwia_ 100 PEGLAVDTQGAVYV-AD-RG---NNRVVKLAAGSKT------------Q-TVLPFTGLNDPDGVAVDNSGN-VYVTDT-- 158 (260)
T ss_dssp EEEEEECTTCCEEE-EE-GG---GTEEEEECTTCSS------------C-EECCCCSCCSCCEEEECTTCC-EEEEEG--
T ss_pred cccccccccceeEe-ec-cc---cccccccccccce------------e-eeeeecccCCcceeeecCCCC-Eeeecc--
Confidence 34788899997543 22 22 3557777665421 0 1111111111 1123567776 554432
Q ss_pred CCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeecccC-CeeEEEeecc
Q 003878 381 APKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIE-IGSVNAISAR 459 (789)
Q Consensus 381 ~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~-~~~v~~~s~s 459 (789)
.+.+|++++.++.. ...+....-....++++.+++.|+++...++ +|+.++.+ +.....+... .....++.++
T Consensus 159 -~~~~i~~~d~~~~~--~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~--~i~~~~~~-~~~~~~~~~~~~~~P~~i~~d 232 (260)
T d1rwia_ 159 -DNNRVVKLEAESNN--QVVLPFTDITAPWGIAVDEAGTVYVTEHNTN--QVVKLLAG-STTSTVLPFTGLNTPLAVAVD 232 (260)
T ss_dssp -GGTEEEEECTTTCC--EEECCCSSCCSEEEEEECTTCCEEEEETTTT--EEEEECTT-CSCCEECCCCSCCCEEEEEEC
T ss_pred -ccccccccccccce--eeeeeccccCCCccceeeeeeeeeeeecCCC--EEEEEeCC-CCeEEEEccCCCCCeEEEEEe
Confidence 34689999987654 3333322223346788877678877665444 78888876 3332333222 2234466777
Q ss_pred cCCcEEEEEEcCCCCCcEEEEEE
Q 003878 460 REDSVVFISFTSFLIPGIVYQCN 482 (789)
Q Consensus 460 ~d~~~l~~~~ss~~~P~~ly~~d 482 (789)
++++ |+++= . .-.+|.+++
T Consensus 233 ~~g~-l~vad-~--~~~rI~~i~ 251 (260)
T d1rwia_ 233 SDRT-VYVAD-R--GNDRVVKLT 251 (260)
T ss_dssp TTCC-EEEEE-G--GGTEEEEEC
T ss_pred CCCC-EEEEE-C--CCCEEEEEe
Confidence 7765 55441 1 124566554
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.46 Score=44.61 Aligned_cols=215 Identities=12% Similarity=0.016 Sum_probs=105.9
Q ss_pred eCCCCcEEEEEEecCCceEEEEEEEEcCCCceecc---cccccccccccCccceeeeeeccccccccccccccccceeeE
Q 003878 139 VSEDAKYLAYALSYSGSDWATIKLMRIEDQIVEAD---ALSWVCFCFSHSFGYFFHLTISLLNVPTYKLFLYLRGIFFFF 215 (789)
Q Consensus 139 ~SpDg~~la~~~~~~g~~~~~i~v~dl~tg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 215 (789)
+++||++||- |+...+|+|||+.+++.+.. .-..+. .+ .+++ +
T Consensus 21 ~~~d~~~l~s-----gs~Dg~i~vWd~~~~~~~~~l~~H~~~V~-------------~v----~~~~------------~ 66 (293)
T d1p22a2 21 LQYDDQKIVS-----GLRDNTIKIWDKNTLECKRILTGHTGSVL-------------CL----QYDE------------R 66 (293)
T ss_dssp EECCSSEEEE-----EESSSCEEEEESSSCCEEEEECCCSSCEE-------------EE----ECCS------------S
T ss_pred EEEcCCEEEE-----EeCCCeEEEEECCCCcEEEEEecCCCCEe-------------ee----eccc------------c
Confidence 5678888884 34445788888888864421 111110 00 0122 3
Q ss_pred EEeeeccccceeeeeeec--------ccccceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCC
Q 003878 216 YLFSLVKSTIYSFWSVVS--------QFKFSSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQS 287 (789)
Q Consensus 216 ~~~~s~~~g~~~l~~~~~--------~~~~~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~ 287 (789)
+++++..+|...+|.+.. ........+.+....++.... ...+..+++.+...
T Consensus 67 ~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~ 127 (293)
T d1p22a2 67 VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK-------------------DRSIAVWDMASPTD 127 (293)
T ss_dssp EEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEET-------------------TSCEEEEECSSSSC
T ss_pred eeecccccccccccccccccccccccccccccccccccccceeeccc-------------------ccceeEeecccccc
Confidence 567777888888887644 011123344444444444322 12345555554332
Q ss_pred CcEEEEecCCCCeeEEEEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEe
Q 003878 288 EDILCWKDPEHPKYIFSGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIA 367 (789)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s 367 (789)
.. .......+...+....+ ....++..+. ...+.++++.++. ....+. +.......++
T Consensus 128 ~~-~~~~~~~~~~~v~~~~~--~~~~~~~~s~-----d~~i~~~d~~~~~-------------~~~~~~-~~~~~v~~~~ 185 (293)
T d1p22a2 128 IT-LRRVLVGHRAAVNVVDF--DDKYIVSASG-----DRTIKVWNTSTCE-------------FVRTLN-GHKRGIACLQ 185 (293)
T ss_dssp CE-EEEEECCCSSCEEEEEE--ETTEEEEEET-----TSEEEEEETTTCC-------------EEEEEE-CCSSCEEEEE
T ss_pred cc-cccccccccccccccee--cccccccccC-----CCceeeecCCCCc-------------EEEEEc-cccccccccc
Confidence 22 12121222222323333 3444443332 3458888887642 122222 2222223345
Q ss_pred cCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC
Q 003878 368 NDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 368 ~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~ 438 (789)
+++..++.... ++.|..+|+.+.........+. ..+..+. .+...+++...++ .|++||+.
T Consensus 186 ~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~--~~v~~~~--~~~~~l~sg~~dg--~i~iwd~~ 246 (293)
T d1p22a2 186 YRDRLVVSGSS----DNTIRLWDIECGACLRVLEGHE--ELVRCIR--FDNKRIVSGAYDG--KIKVWDLV 246 (293)
T ss_dssp EETTEEEEEET----TSCEEEEETTTCCEEEEECCCS--SCEEEEE--CCSSEEEEEETTS--CEEEEEHH
T ss_pred CCCCeEEEecC----CCEEEEEecccceeeeeecccc--eeeeecc--ccceEEEEEcCCC--EEEEEECC
Confidence 56666654332 3568888998776222222222 3333333 3355666777777 68888865
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=96.24 E-value=0.019 Score=60.35 Aligned_cols=56 Identities=13% Similarity=-0.006 Sum_probs=36.6
Q ss_pred EEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEEE
Q 003878 242 WTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMCI 318 (789)
Q Consensus 242 wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~~ 318 (789)
.+||||+||+.-. ...+|.+.++.+.....+ .+.+.. ....++.+||||+++++..
T Consensus 79 gtpDGr~lfV~d~------------------~~~rVavIDl~t~k~~~i--i~iP~g-~gphgi~~spdg~t~YV~~ 134 (441)
T d1qnia2 79 GRYDGKYLFINDK------------------ANTRVARIRLDIMKTDKI--THIPNV-QAIHGLRLQKVPKTNYVFC 134 (441)
T ss_dssp TEEEEEEEEEEET------------------TTTEEEEEETTTTEEEEE--EECTTC-CCEEEEEECCSSBCCEEEE
T ss_pred ccCCCCEEEEEcC------------------CCCEEEEEECCCCcEeeE--EecCCC-CCccceEEeccCCEEEEEe
Confidence 3799999988733 345688999987644332 333332 2245789999999765443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.72 E-value=0.95 Score=43.37 Aligned_cols=159 Identities=9% Similarity=-0.031 Sum_probs=96.0
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.+++...-++.||++.. ....|.+.++..... .+++..... ...+++..|.+.+|+++
T Consensus 82 ~~iAvD~~~~~lY~~d~------------------~~~~I~~~~~dg~~~-~~l~~~~l~---~p~~l~vdp~~g~ly~t 139 (263)
T d1npea_ 82 EGIALDHLGRTIFWTDS------------------QLDRIEVAKMDGTQR-RVLFDTGLV---NPRGIVTDPVRGNLYWT 139 (263)
T ss_dssp EEEEEETTTTEEEEEET------------------TTTEEEEEETTSCSC-EEEECSSCS---SEEEEEEETTTTEEEEE
T ss_pred cEEEEeccCCeEEEecc------------------CCCEEEEEecCCceE-EEEeccccc---CCcEEEEecccCcEEEe
Confidence 34555445788888732 234688888765432 223322222 23578899999999887
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-cccce-eEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDAQ-YEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~~-~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
..... ...|+.+++++.. ...+.. +.... --.+.+.++.||+... ...+|..+++++..
T Consensus 140 ~~~~~--~~~I~r~~~dG~~--------------~~~i~~~~~~~P~glaiD~~~~~lYw~d~---~~~~I~~~~~~g~~ 200 (263)
T d1npea_ 140 DWNRD--NPKIETSHMDGTN--------------RRILAQDNLGLPNGLTFDAFSSQLCWVDA---GTHRAECLNPAQPG 200 (263)
T ss_dssp ECCSS--SCEEEEEETTSCC--------------CEEEECTTCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTEEE
T ss_pred ecCCC--CcEEEEecCCCCC--------------ceeeeeecccccceEEEeecCcEEEEEeC---CCCEEEEEECCCCC
Confidence 64322 3569999987631 122222 21111 1236677889998643 34689999998765
Q ss_pred CeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCcee
Q 003878 396 DWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLL 443 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~ 443 (789)
.+.++... .. -.++++.. +++|++-... ..|+++|..+|+..
T Consensus 201 -~~~v~~~~-~~-P~~lav~~-~~lYwtd~~~--~~I~~~~~~~g~~~ 242 (263)
T d1npea_ 201 -RRKVLEGL-QY-PFAVTSYG-KNLYYTDWKT--NSVIAMDLAISKEM 242 (263)
T ss_dssp -EEEEEECC-CS-EEEEEEET-TEEEEEETTT--TEEEEEETTTTEEE
T ss_pred -eEEEECCC-CC-cEEEEEEC-CEEEEEECCC--CEEEEEECCCCccc
Confidence 44555433 22 34788876 7888765544 37999999878753
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.63 E-value=1.1 Score=43.44 Aligned_cols=166 Identities=10% Similarity=0.156 Sum_probs=94.1
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCC--CeeEEEEEEecCCcEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEH--PKYIFSGHVTEDGQYLV 315 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~--~~~~~~~~~SpDG~~l~ 315 (789)
---.|- +.+.|.+... ..+|-|++.. ..+.+.+|+.... ...+.+...++|++|++
T Consensus 106 vfWkWi-s~~~L~lVT~--------------------taVYHW~~~g-~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~ 163 (327)
T d1utca2 106 TFWKWI-SLNTVALVTD--------------------NAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAKQKWLL 163 (327)
T ss_dssp CEEEES-SSSEEEEECS--------------------SEEEEEESSS-SCCCEEEEECCGGGTTCEEEEEEECTTSCEEE
T ss_pred EEEEec-CCCEEEEEcC--------------------CceEEEcccC-CCCchhhhhhcccccCceEEEEEECCCCCEEE
Confidence 445677 4567777632 3499999954 3457788877532 34466788999999998
Q ss_pred EEEEcCCC--CceEEEEEECCCCCCCcccccccCCCCccEeeeccccceeEEEecCC----CEEEEEECCCCCCceEEEE
Q 003878 316 MCIEENCD--PVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQYEVIANDD----TVFTFLTNKDAPKYKIIRV 389 (789)
Q Consensus 316 ~~~~~~~~--~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dG----~~l~~~tn~~~~~~~L~~~ 389 (789)
+..-...+ -...+-++..+.+ .....++..+.+..+--+| ..++...+++....+|..+
T Consensus 164 l~GI~~~~~~i~G~mQLYS~er~---------------~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIi 228 (327)
T d1utca2 164 LTGISAQQNRVVGAMQLYSVDRK---------------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHII 228 (327)
T ss_dssp EEEEEEETTEEEEEEEEEETTTT---------------EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEE
T ss_pred EEeEecCCCceeEEEEEEEeccC---------------cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEE
Confidence 76533221 1233444454432 2333444333333332222 2355555555566899999
Q ss_pred ECCCCC--------CeEEe-ccCC-CCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCce
Q 003878 390 DLKEPN--------DWFEV-IPEA-ERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSL 442 (789)
Q Consensus 390 dl~~~~--------~~~~l-~~~~-~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~ 442 (789)
++..+. ...++ +|++ ....--.+.++..-.+++.....| -|+++|++||..
T Consensus 229 Eig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G--~i~lyDleTgt~ 289 (327)
T d1utca2 229 EVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYG--YIHLYDLETGTC 289 (327)
T ss_dssp ECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTS--EEEEEETTTCCE
T ss_pred EcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCc--EEEEEEcccccE
Confidence 886531 11222 2332 122223466666344666666666 689999999875
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.60 E-value=1.1 Score=43.04 Aligned_cols=199 Identities=8% Similarity=-0.049 Sum_probs=113.7
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.++++.+-++.||++.. ....|++..+.+... ..+....- ....++++..-++.|++.
T Consensus 39 ~~ld~D~~~~~iywsd~------------------~~~~I~~~~l~g~~~--~~v~~~~~--~~p~~iAvD~~~~~lY~~ 96 (263)
T d1npea_ 39 IGLAFDCVDKVVYWTDI------------------SEPSIGRASLHGGEP--TTIIRQDL--GSPEGIALDHLGRTIFWT 96 (263)
T ss_dssp EEEEEETTTTEEEEEET------------------TTTEEEEEESSSCCC--EEEECTTC--CCEEEEEEETTTTEEEEE
T ss_pred EEEEEEeCCCEEEEEEC------------------CCCeEEEEEcccCCc--EEEEEecc--ccccEEEEeccCCeEEEe
Confidence 45677777888887632 234688888865433 22332211 123456777678888776
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-cccc-eeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
... ...|.++++++.. ...+.. +... ..-.+.|.+..+|+... +....+|+++++++..
T Consensus 97 d~~----~~~I~~~~~dg~~--------------~~~l~~~~l~~p~~l~vdp~~g~ly~t~~-~~~~~~I~r~~~dG~~ 157 (263)
T d1npea_ 97 DSQ----LDRIEVAKMDGTQ--------------RRVLFDTGLVNPRGIVTDPVRGNLYWTDW-NRDNPKIETSHMDGTN 157 (263)
T ss_dssp ETT----TTEEEEEETTSCS--------------CEEEECSSCSSEEEEEEETTTTEEEEEEC-CSSSCEEEEEETTSCC
T ss_pred ccC----CCEEEEEecCCce--------------EEEEecccccCCcEEEEecccCcEEEeec-CCCCcEEEEecCCCCC
Confidence 422 4578888887631 112222 1111 12236777788887543 3345689999998865
Q ss_pred CeEEeccCCCCceeeeEEEec-CCEEEEEEEeCCeEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCC
Q 003878 396 DWFEVIPEAERDVLESATAVN-LNQMIVSYLSDVKYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLI 474 (789)
Q Consensus 396 ~~~~l~~~~~~~~i~~v~~~~-~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~ 474 (789)
.+.++... -....++++.. +++||+.-. +...|...+++ |...+.+......-.+++. +++.++++=. .
T Consensus 158 -~~~i~~~~-~~~P~glaiD~~~~~lYw~d~--~~~~I~~~~~~-g~~~~~v~~~~~~P~~lav--~~~~lYwtd~---~ 227 (263)
T d1npea_ 158 -RRILAQDN-LGLPNGLTFDAFSSQLCWVDA--GTHRAECLNPA-QPGRRKVLEGLQYPFAVTS--YGKNLYYTDW---K 227 (263)
T ss_dssp -CEEEECTT-CSCEEEEEEETTTTEEEEEET--TTTEEEEEETT-EEEEEEEEECCCSEEEEEE--ETTEEEEEET---T
T ss_pred -ceeeeeec-ccccceEEEeecCcEEEEEeC--CCCEEEEEECC-CCCeEEEECCCCCcEEEEE--ECCEEEEEEC---C
Confidence 34554433 23345777764 367776543 34589999997 5433333222111123443 3566776532 3
Q ss_pred CcEEEEEECCCCC
Q 003878 475 PGIVYQCNLKTET 487 (789)
Q Consensus 475 P~~ly~~dl~tg~ 487 (789)
-.++++.|..+++
T Consensus 228 ~~~I~~~~~~~g~ 240 (263)
T d1npea_ 228 TNSVIAMDLAISK 240 (263)
T ss_dssp TTEEEEEETTTTE
T ss_pred CCEEEEEECCCCc
Confidence 5689999988774
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.07 E-value=0.96 Score=42.94 Aligned_cols=109 Identities=9% Similarity=0.039 Sum_probs=57.6
Q ss_pred EEEEecCCcEEEEEEEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeecccccee-EEEecCCCEEEEEECCCCC
Q 003878 304 SGHVTEDGQYLVMCIEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLIDGFDAQY-EVIANDDTVFTFLTNKDAP 382 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dG~~l~~~tn~~~~ 382 (789)
+++++++|+ +++... . ...|+.++.++.. ............. ..+.++|. ||+. +. .
T Consensus 144 ~i~~~~~g~-~~v~~~-~---~~~i~~~d~~~~~-------------~~~~~~~~~~~p~gi~~d~~g~-l~vs-d~--~ 201 (260)
T d1rwia_ 144 GVAVDNSGN-VYVTDT-D---NNRVVKLEAESNN-------------QVVLPFTDITAPWGIAVDEAGT-VYVT-EH--N 201 (260)
T ss_dssp EEEECTTCC-EEEEEG-G---GTEEEEECTTTCC-------------EEECCCSSCCSEEEEEECTTCC-EEEE-ET--T
T ss_pred eeeecCCCC-Eeeecc-c---cccccccccccce-------------eeeeeccccCCCccceeeeeee-eeee-ec--C
Confidence 578899998 443332 1 4568888876521 0111111121111 23567765 5554 33 3
Q ss_pred CceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECC
Q 003878 383 KYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLK 438 (789)
Q Consensus 383 ~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~ 438 (789)
+.+|++++..+.. ..++....-..-.++++.+++.|+++-..+ .+|+.++..
T Consensus 202 ~~~i~~~~~~~~~--~~~~~~~~~~~P~~i~~d~~g~l~vad~~~--~rI~~i~~~ 253 (260)
T d1rwia_ 202 TNQVVKLLAGSTT--STVLPFTGLNTPLAVAVDSDRTVYVADRGN--DRVVKLTSL 253 (260)
T ss_dssp TTEEEEECTTCSC--CEECCCCSCCCEEEEEECTTCCEEEEEGGG--TEEEEECCC
T ss_pred CCEEEEEeCCCCe--EEEEccCCCCCeEEEEEeCCCCEEEEECCC--CEEEEEeCC
Confidence 5689999876554 334433322334577777756676653333 367766653
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.37 E-value=3.5 Score=39.20 Aligned_cols=94 Identities=10% Similarity=0.103 Sum_probs=53.8
Q ss_pred EecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeee
Q 003878 366 IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQ 445 (789)
Q Consensus 366 ~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~ 445 (789)
+.++| .+|+.... +.+|++++.++.. ...+-.........++++.+++.+++.-..+ ..+|.+++.+ |+.++.
T Consensus 164 ~d~~g-~i~v~d~~---~~~V~~~d~~G~~-~~~~g~~g~~~~P~giavD~~G~i~Vad~~~-~~~v~~f~~~-G~~~~~ 236 (279)
T d1q7fa_ 164 VNDKQ-EIFISDNR---AHCVKVFNYEGQY-LRQIGGEGITNYPIGVGINSNGEILIADNHN-NFNLTIFTQD-GQLISA 236 (279)
T ss_dssp ECSSS-EEEEEEGG---GTEEEEEETTCCE-EEEESCTTTSCSEEEEEECTTCCEEEEECSS-SCEEEEECTT-SCEEEE
T ss_pred eccce-eEEeeecc---ccceeeeecCCce-eeeecccccccCCcccccccCCeEEEEECCC-CcEEEEECCC-CCEEEE
Confidence 45555 56665433 4688888876532 3333222222345678887767777754332 2368888876 876555
Q ss_pred cccC--CeeEEEeecccCCcEEEE
Q 003878 446 LPIE--IGSVNAISARREDSVVFI 467 (789)
Q Consensus 446 l~~~--~~~v~~~s~s~d~~~l~~ 467 (789)
+..+ ......++.++|+. +++
T Consensus 237 ~~~~~~~~~p~~vav~~dG~-l~V 259 (279)
T d1q7fa_ 237 LESKVKHAQCFDVALMDDGS-VVL 259 (279)
T ss_dssp EEESSCCSCEEEEEEETTTE-EEE
T ss_pred EeCCCCCCCEeEEEEeCCCc-EEE
Confidence 5432 22345667777775 444
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=93.02 E-value=2.1 Score=43.65 Aligned_cols=18 Identities=6% Similarity=0.112 Sum_probs=14.9
Q ss_pred EEEEecCCcEEEEEEEcC
Q 003878 304 SGHVTEDGQYLVMCIEEN 321 (789)
Q Consensus 304 ~~~~SpDG~~l~~~~~~~ 321 (789)
.+.+|+||+|+++++.+.
T Consensus 197 ~~~~s~dGK~af~TsyNS 214 (459)
T d1fwxa2 197 NCDADYEGKWAFSTSYNS 214 (459)
T ss_dssp CEEECSSSSEEEEEESCT
T ss_pred ccccCCCCCEEEEEeccc
Confidence 578999999999988543
|
| >d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Human 'protective protein', HPP species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.54 E-value=0.45 Score=49.67 Aligned_cols=138 Identities=12% Similarity=0.081 Sum_probs=80.1
Q ss_pred EecCCCceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCC----------------HHHHHHHHcCCeEEEEEee
Q 003878 513 VPSKDGSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFS----------------VSRTILMRHLGAVFCIANI 576 (789)
Q Consensus 513 ~~s~dg~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~----------------~~~~~~l~~~G~~v~~~~~ 576 (789)
++..++ ..+-.|++..++ + ....|+++++-||||.+...... ..-.+|.. =..++.+|.
T Consensus 26 l~~~~~-~~lffw~~~s~~-~-~~~~Pl~~wlnGGPG~SS~~g~~~e~GP~~v~~~~~~~~~N~~SW~~--~anllfIDq 100 (452)
T d1ivya_ 26 LKSSGS-KHLHYWFVESQK-D-PENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNL--IANVLYLES 100 (452)
T ss_dssp EECSTT-EEEEEEEECCSS-C-GGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCGGG--SSEEEEECC
T ss_pred eecCCC-ceEEEEEEEcCC-C-CCCCCEEEEECCCCcHHHHHHHHHccCCcEEcCCCCeeccCCcchhc--ccCEEEEec
Confidence 445567 788777664443 2 25689999999999876531100 00122332 245677786
Q ss_pred cCCCCCChhHHhcccccCCcchHHHHHHHH-HHHHHcCCCCCCcEEEEeeChHHHHHHHHHHh---CCC-ceeEEEecCC
Q 003878 577 RGGGEYGEEWHKGGALAKKQNCFDDFISAS-EYLISAGYTQSRKLCIEGGSNGGLLVGACINQ---RPD-LFGCALAHVG 651 (789)
Q Consensus 577 RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~-~~L~~~~~~d~~~i~i~G~S~GG~l~~~~~~~---~pd-~f~a~v~~~p 651 (789)
.=|.+|...-. ..........-.|+.+++ +++....-...+++.|.|-|+||..+-.++.. .+. .++++++..|
T Consensus 101 PvGtGfS~~~~-~~~~~~~~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia~~i~~~~~i~l~Gi~igng 179 (452)
T d1ivya_ 101 PAGVGFSYSDD-KFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNG 179 (452)
T ss_dssp STTSTTCEESS-CCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESC
T ss_pred CCCcccccCCC-CCCCCCcHHHHHHHHHHHHHHHHhchhhcCCceEEeeccccchhhHHHHHHHHhcCcccccceEcCCC
Confidence 65555543210 000111112245665555 44444433455689999999999877666542 232 4899999999
Q ss_pred ccccc
Q 003878 652 VMDML 656 (789)
Q Consensus 652 ~~d~~ 656 (789)
++|..
T Consensus 180 ~~d~~ 184 (452)
T d1ivya_ 180 LSSYE 184 (452)
T ss_dssp CSBHH
T ss_pred ccCch
Confidence 88753
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.25 E-value=4.9 Score=38.03 Aligned_cols=163 Identities=8% Similarity=0.006 Sum_probs=97.7
Q ss_pred ceEEEEeCCcEEEEEEccCCCCCCCCCCCccccCCcccEEEEEECCCCCCCcEEEEecCCCCeeEEEEEEecCCcEEEEE
Q 003878 238 SSIAWTHDSKGFFYSRYPAPKEGKDMDAGTETDSNLYHEFYYHFLGTKQSEDILCWKDPEHPKYIFSGHVTEDGQYLVMC 317 (789)
Q Consensus 238 ~~~~wspDg~~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~SpDG~~l~~~ 317 (789)
.+++.-+-++.||++.. ...+|.+.++..... ..++...... ..+++..|...+|++.
T Consensus 80 ~glAvD~~~~~lY~~d~------------------~~~~I~v~~~~g~~~-~~~~~~~~~~---P~~l~vd~~~g~ly~~ 137 (266)
T d1ijqa1 80 DGLAVDWIHSNIYWTDS------------------VLGTVSVADTKGVKR-KTLFRENGSK---PRAIVVDPVHGFMYWT 137 (266)
T ss_dssp CEEEEETTTTEEEEEET------------------TTTEEEEEETTSSSE-EEEEECTTCC---EEEEEEETTTTEEEEE
T ss_pred ceEEEeeccceEEEEec------------------CCCEEEeEecCCceE-EEEEcCCCCC---cceEEEEcccCeEEEe
Confidence 45666556888988732 234688888865432 2333333222 3467889988888876
Q ss_pred EEcCCCCceEEEEEECCCCCCCcccccccCCCCccEeeec-cccc-eeEEEecCCCEEEEEECCCCCCceEEEEECCCCC
Q 003878 318 IEENCDPVNKVYYCDLSALPEGLEGFKKRDGLLPFVKLID-GFDA-QYEVIANDDTVFTFLTNKDAPKYKIIRVDLKEPN 395 (789)
Q Consensus 318 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~l~~-~~~~-~~~~~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~ 395 (789)
... . ...|+.+++++.. ...+.. +... .--.+.+.+++||+.-. ....|..+++++..
T Consensus 138 ~~~-~--~~~I~r~~~dGs~--------------~~~l~~~~~~~p~gl~iD~~~~~lYw~d~---~~~~I~~~~~dG~~ 197 (266)
T d1ijqa1 138 DWG-T--PAKIKKGGLNGVD--------------IYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGN 197 (266)
T ss_dssp ECS-S--SCEEEEEETTSCC--------------EEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCS
T ss_pred ccC-C--CcceeEeccCCCc--------------eecccccccceeeEEEeeccccEEEEecC---CcCEEEEEECCCCC
Confidence 532 2 4579999987631 222322 1111 11236777899998643 35789999998765
Q ss_pred CeEEeccCCC-CceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeeec
Q 003878 396 DWFEVIPEAE-RDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQL 446 (789)
Q Consensus 396 ~~~~l~~~~~-~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~l 446 (789)
.+.++.... .....++++.. +++|++-..+ ..|++++..+|+..+.+
T Consensus 198 -~~~~~~~~~~~~~p~~lav~~-~~ly~td~~~--~~I~~~~~~~g~~~~~~ 245 (266)
T d1ijqa1 198 -RKTILEDEKRLAHPFSLAVFE-DKVFWTDIIN--EAIFSANRLTGSDVNLL 245 (266)
T ss_dssp -CEEEEECTTTTSSEEEEEEET-TEEEEEETTT--TEEEEEETTTCCCCEEE
T ss_pred -EEEEEeCCCcccccEEEEEEC-CEEEEEECCC--CeEEEEECCCCcceEEE
Confidence 333433221 12234678876 8888765443 47999998877653333
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.91 E-value=0.12 Score=53.07 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=18.2
Q ss_pred CcEEEEeeChHHHHHHHHHHhC
Q 003878 618 RKLCIEGGSNGGLLVGACINQR 639 (789)
Q Consensus 618 ~~i~i~G~S~GG~l~~~~~~~~ 639 (789)
++|-++|||+||+-+=.++...
T Consensus 105 ~kVnLIgHS~GGld~Ryl~~~l 126 (388)
T d1ku0a_ 105 GRVHIIAHSQGGQTARMLVSLL 126 (388)
T ss_dssp CCEEEEEETTHHHHHHHHHHHH
T ss_pred CceeEeecccccHHHHHHHHHh
Confidence 5899999999998887776543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.50 E-value=8.7 Score=36.14 Aligned_cols=110 Identities=8% Similarity=0.061 Sum_probs=61.6
Q ss_pred EecCCCEEEEEECCCCCCceEEEEECCCCCCeEEeccCCCCceeeeEEEecCCEEEEEEEeCCeEEEEEEECCCCceeee
Q 003878 366 IANDDTVFTFLTNKDAPKYKIIRVDLKEPNDWFEVIPEAERDVLESATAVNLNQMIVSYLSDVKYVLQIRDLKNGSLLHQ 445 (789)
Q Consensus 366 ~s~dG~~l~~~tn~~~~~~~L~~~dl~~~~~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~g~~~L~~~dl~tG~~~~~ 445 (789)
+.++|+ +|+... ...++..++.++.- ...+-..........+++.+++.+++.....+ .|++++.+ |+.+..
T Consensus 121 vd~~G~-i~v~~~---~~~~~~~~~~~g~~-~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~--~V~~~d~~-G~~~~~ 192 (279)
T d1q7fa_ 121 VDNKGR-IIVVEC---KVMRVIIFDQNGNV-LHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH--CVKVFNYE-GQYLRQ 192 (279)
T ss_dssp ECTTSC-EEEEET---TTTEEEEECTTSCE-EEEEECTTTCSSEEEEEECSSSEEEEEEGGGT--EEEEEETT-CCEEEE
T ss_pred cccCCc-EEEEee---ccceeeEeccCCce-eecccccccccccceeeeccceeEEeeecccc--ceeeeecC-Cceeee
Confidence 556665 444332 34577777765432 22221222224456677776667777655443 78899987 776555
Q ss_pred cccC--CeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCCC
Q 003878 446 LPIE--IGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTET 487 (789)
Q Consensus 446 l~~~--~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg~ 487 (789)
+..+ .....+++.+++++ ++++ .+. .-..+..++. +|+
T Consensus 193 ~g~~g~~~~P~giavD~~G~-i~Va-d~~-~~~~v~~f~~-~G~ 232 (279)
T d1q7fa_ 193 IGGEGITNYPIGVGINSNGE-ILIA-DNH-NNFNLTIFTQ-DGQ 232 (279)
T ss_dssp ESCTTTSCSEEEEEECTTCC-EEEE-ECS-SSCEEEEECT-TSC
T ss_pred ecccccccCCcccccccCCe-EEEE-ECC-CCcEEEEECC-CCC
Confidence 5332 22345677888887 5554 222 2346777774 464
|
| >d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.41 E-value=3 Score=42.61 Aligned_cols=132 Identities=14% Similarity=0.148 Sum_probs=73.5
Q ss_pred CceEEEEEEEecCCCCCCCCccEEEEEcCCCCccCCCCCCH---------------HHHHHHHcCCeEEEEEeecCCCCC
Q 003878 518 GSTKIPMFIVSKKNIKLDGSHPCLLYGYGGFNISVTPSFSV---------------SRTILMRHLGAVFCIANIRGGGEY 582 (789)
Q Consensus 518 g~~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~---------------~~~~~l~~~G~~v~~~~~RG~g~~ 582 (789)
+ ..+-.|++...+ + ..+.|++|++-||||.+...++.. .-.+|.. =..++.+|..=|.+|
T Consensus 27 ~-~~lfyw~~~s~~-~-~~~~Pl~~WlnGGPG~SS~~g~~~e~GP~~i~~~~~~~~N~~sW~~--~anllfiD~PvGtGf 101 (421)
T d1wpxa1 27 D-KHFFFWTFESRN-D-PAKDPVILWLNGGPGCSSLTGLFFELGPSSIGPDLKPIGNPYSWNS--NATVIFLDQPVNVGF 101 (421)
T ss_dssp C-CEEEEEEECCSS-C-TTTSCEEEEECCTTTBCTHHHHHHTTSSEEECTTSCEEECTTCGGG--SSEEEEECCSTTSTT
T ss_pred C-ceEEEEEEEeCC-C-CCCCCEEEEECCCCcHHHHHHHHHhcCCcEECCCCccccCCccccc--ccCEEEEecCCCCCc
Confidence 5 577666654433 2 356799999999998765311100 0012221 235677775545555
Q ss_pred ChhHHhcccccCCcchHHHHHHHHHHHHHc-CC-C-CCCcEEEEeeChHHHHHHHHHH---hCCC---ceeEEEecCCcc
Q 003878 583 GEEWHKGGALAKKQNCFDDFISASEYLISA-GY-T-QSRKLCIEGGSNGGLLVGACIN---QRPD---LFGCALAHVGVM 653 (789)
Q Consensus 583 g~~~~~~~~~~~~~~~~~D~~~~~~~L~~~-~~-~-d~~~i~i~G~S~GG~l~~~~~~---~~pd---~f~a~v~~~p~~ 653 (789)
...- .........+-.|+.++++...+. .. . ..+.+.|.|-|+||..+-.++. .+.+ -+++++...|++
T Consensus 102 Sy~~--~~~~~~~~~~a~d~~~fl~~f~~~fp~~~~k~~~~yi~GESYgG~yvP~la~~i~~~~~~~inlkGi~iGng~~ 179 (421)
T d1wpxa1 102 SYSG--SSGVSNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLT 179 (421)
T ss_dssp CBCS--SCCCCSHHHHHHHHHHHHHHHHHHCTHHHHTCCCEEEEEETTHHHHHHHHHHHHHHCSSCSSCCCEEEEESCCC
T ss_pred eecC--CccccchHHHHHHHHHHHHHHHHhChhhhccCCCcEEeeecccccccHHHHHHHHHccCCCcceeeeEecCCcc
Confidence 4321 111111122335666555544433 21 1 2357999999999987665542 1222 478999999988
Q ss_pred ccc
Q 003878 654 DML 656 (789)
Q Consensus 654 d~~ 656 (789)
|..
T Consensus 180 dp~ 182 (421)
T d1wpxa1 180 DPL 182 (421)
T ss_dssp CHH
T ss_pred cch
Confidence 864
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=82.41 E-value=24 Score=34.34 Aligned_cols=114 Identities=11% Similarity=0.126 Sum_probs=62.7
Q ss_pred ecCCCEEEEEECCCCCC--ceEEEEECCCCC-CeEEeccCCCCceeeeEEEecCCEEEEEEEeC---------------C
Q 003878 367 ANDDTVFTFLTNKDAPK--YKIIRVDLKEPN-DWFEVIPEAERDVLESATAVNLNQMIVSYLSD---------------V 428 (789)
Q Consensus 367 s~dG~~l~~~tn~~~~~--~~L~~~dl~~~~-~~~~l~~~~~~~~i~~v~~~~~~~lv~~~~~~---------------g 428 (789)
..||...+++.|....+ -.|+.++.++.+ .|..-+.........++.+.+++.+|++-... .
T Consensus 107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~ 186 (340)
T d1v04a_ 107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA 186 (340)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence 45677555555542233 345555544332 23333333334556778888778888763211 1
Q ss_pred eEEEEEEECCCCceeeecccCCeeEEEeecccCCcEEEEEEcCCCCCcEEEEEECCCC
Q 003878 429 KYVLQIRDLKNGSLLHQLPIEIGSVNAISARREDSVVFISFTSFLIPGIVYQCNLKTE 486 (789)
Q Consensus 429 ~~~L~~~dl~tG~~~~~l~~~~~~v~~~s~s~d~~~l~~~~ss~~~P~~ly~~dl~tg 486 (789)
...++.++. ++. +.+........+++.++|++.++++.+ ...++++|++...
T Consensus 187 ~g~v~~~~~--~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t---~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 187 WSFVTYYSP--NDV-RVVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHAN 238 (340)
T ss_dssp CEEEEEECS--SCE-EEEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTT
T ss_pred ceeEEEEcC--Cce-EEEcCCCCccceeEECCCCCEEEEEeC---CCCeEEEEEeCCC
Confidence 235555554 332 333222223457788999998888764 3567888887643
|
| >d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
Probab=81.12 E-value=3.6 Score=42.87 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=24.9
Q ss_pred CeEEEEecCCCCCCCcHHHHHHHHHHH
Q 003878 707 PSTLLLTADHDDRVVPLHSLKLLATMQ 733 (789)
Q Consensus 707 pp~Li~~g~~D~~V~~~~~~~~~~~L~ 733 (789)
-++||.+|+.|..|++.-.+.+..+|+
T Consensus 373 irVLIy~Gd~D~icn~~Gte~~i~~L~ 399 (483)
T d1ac5a_ 373 IEIVLFNGDKDLICNNKGVLDTIDNLK 399 (483)
T ss_dssp CEEEEEEETTCSTTCHHHHHHHHHHCE
T ss_pred CEEEEEECChhhcCCCHHHHHHHHhCC
Confidence 389999999999999999999999885
|