Citrus Sinensis ID: 003882
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 789 | 2.2.26 [Sep-21-2011] | |||||||
| Q6DN12 | 878 | Multiple C2 and transmemb | yes | no | 0.813 | 0.731 | 0.227 | 1e-19 | |
| Q5RJH2 | 878 | Multiple C2 and transmemb | no | no | 0.814 | 0.732 | 0.219 | 2e-18 | |
| Q6DN14 | 999 | Multiple C2 and transmemb | no | no | 0.470 | 0.371 | 0.219 | 3e-17 | |
| A0JJX5 | 569 | Synaptotagmin-4 OS=Arabid | no | no | 0.344 | 0.478 | 0.273 | 4e-10 | |
| C9J798 | 803 | Putative Ras GTPase-activ | no | no | 0.300 | 0.295 | 0.233 | 2e-09 | |
| O43374 | 803 | Ras GTPase-activating pro | no | no | 0.300 | 0.295 | 0.233 | 2e-09 | |
| Q9ZVT9 | 1020 | C2 and GRAM domain-contai | no | no | 0.143 | 0.110 | 0.310 | 5e-09 | |
| O43581 | 403 | Synaptotagmin-7 OS=Homo s | no | no | 0.271 | 0.531 | 0.238 | 5e-09 | |
| Q9R0N7 | 403 | Synaptotagmin-7 OS=Mus mu | no | no | 0.271 | 0.531 | 0.238 | 1e-08 | |
| Q6PFQ7 | 802 | Ras GTPase-activating pro | no | no | 0.297 | 0.293 | 0.236 | 3e-07 |
| >sp|Q6DN12|MCTP2_HUMAN Multiple C2 and transmembrane domain-containing protein 2 OS=Homo sapiens GN=MCTP2 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 170/747 (22%), Positives = 312/747 (41%), Gaps = 105/747 (14%)
Query: 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKL-GNYKGKTRHFEKKSNPEWKQVFAFSKEKI 112
+ L + +++ R+L G+ DPYV+ KL G K++ K NP W ++ + +
Sbjct: 194 YLLTIHLKEGRNLVVRDRCGTSDPYVKFKLNGKTLYKSKVIYKNLNPVWDEIVVLPIQSL 253
Query: 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGE 172
L V V DR++ D++G ++++ + L +LED G
Sbjct: 254 DQK-LRVKVYDRDLTT-SDFMGSAFVILSDLELNRTTEHIL-----KLEDPNSLEDDMGV 306
Query: 173 VMLAVWIGTQADEAFPEAWHSDA--ATVEGEGVFNIR-SKVYVSPKLW--YLRVNVIEAQ 227
++L + + + + W + + + + N+R S+ +LW + + ++E +
Sbjct: 307 IVLNLNLVVKQGDFKRHRWSNRKRLSASKSSLIRNLRLSESLKKNQLWNGIISITLLEGK 366
Query: 228 DVEPLDKSQLPQAFVEAQVGNQVLKTK-LCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVE 286
+V + + FV+ ++G+Q K+K LC ++ NP W E F L + V
Sbjct: 367 NVS---GGSMTEMFVQLKLGDQRYKSKTLC--KSANPQWQEQFDFHYFSDRMGILDIEVW 421
Query: 287 NKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIH 346
K +E LG ++ ++ L + + L+ L L S
Sbjct: 422 GKDNKKHEERLGTCKVDISA----LPLKQANCLELPLDSCLGALLMLVTLTPCAGVSVSD 477
Query: 347 LRVCLEGAYHVMDESTMYISDQRPTARQLWK--QPIGILEVGILSAQGLLPMKTRDGRGT 404
L VC + D S QR + K + +GIL+V +L A LL D G
Sbjct: 478 LCVC-----PLADLSERKQITQRYCLQNSLKDVKDVGILQVKVLKAADLL---AADFSGK 529
Query: 405 TDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGTKPD 464
+D +C+ + G ++T T+ N NP+WN+ +T+ + D V+ + VFD G KP
Sbjct: 530 SDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDE-----DGDKPP 584
Query: 465 SRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTCLSLASMIYLYAHP 524
+GKV I L ++ + + V K +L+ A + +IYL
Sbjct: 585 DFLGKVAIPLLSIRDGQPNCY-----------VLKNKDLEQAFK-------GVIYL---- 622
Query: 525 LLPKMHYLHPFTVNQLDSLRYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSK 584
+M ++ N V + R P K VE DS S +
Sbjct: 623 ---EMDLIY---------------NPVKASI-RTFTPREKRFVE-----DSRKLSKKILS 658
Query: 585 ANFFRIVSLFSGAISMSKWLGEVRYWKNPVTTILVHVLFLILICYPELILPTIFLYMFLI 644
+ R+ + + ++L W++ + + + +FLI + EL + I L + LI
Sbjct: 659 RDVDRVKRITMAIWNTMQFLKSCFQWESTLRSTIAFAVFLITVWNFELYM--IPLALLLI 716
Query: 645 GIWNYRFRPRHPPHMDTKL-SWADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGR 703
++N+ RP + K+ S D+ ++D+E D ++ + R ++ +
Sbjct: 717 FVYNF-IRP-----VKGKVSSIQDSQESTDIDDEEDEDDKESEKKGLIERIYMVQDIVST 770
Query: 704 IQTVVGDMATQGERFQALLSWRDPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRH 763
+Q V+ ++A+ GER + +W P +SL + A ++LY P + I L+ G+
Sbjct: 771 VQNVLEEIASFGERIKNTFNWTVPFLSSLACLILAAATIILYFIPLRYIILIWGI----- 825
Query: 764 PRFRSKLP---SIPSN----FFRRLPS 783
+F KL SI +N F R+PS
Sbjct: 826 NKFTKKLRNPYSIDNNELLDFLSRVPS 852
|
Homo sapiens (taxid: 9606) |
| >sp|Q5RJH2|MCTP2_MOUSE Multiple C2 and transmembrane domain-containing protein 2 OS=Mus musculus GN=Mctp2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 164/746 (21%), Positives = 300/746 (40%), Gaps = 103/746 (13%)
Query: 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKL-GNYKGKTRHFEKKSNPEWKQVFAFSKEKI 112
+ L + +++ R+L G+ DPYV+ KL G K++ K NP W ++ + +
Sbjct: 194 YLLTIHLKEGRNLVVRDRCGTSDPYVKFKLNGKTLYKSKVIYKNLNPIWDEIVVLPIQSL 253
Query: 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGE 172
L V V DR++ + D++G + ++ + L +LED G
Sbjct: 254 DQK-LRVKVYDRDLT-KSDFMGSAFVVLRDLELNRTTEHIL-----KLEDPNSLEDDMGV 306
Query: 173 VMLAVWIGTQADEAFPEAWHSDA--ATVEGEGVFNIR-SKVYVSPKLW--YLRVNVIEAQ 227
++L + + + + W + + + + N+R S+ +LW + + ++E +
Sbjct: 307 IVLNLNLVVKQGDFKRHRWSNRKRLSASKSSLIRNLRLSESLRKNQLWNGIISITLLEGK 366
Query: 228 DVEPLDKSQLPQAFVEAQVGNQVLKTK-LCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVE 286
+V + + FV+ ++G Q K+K LC ++ NP W E F L + V
Sbjct: 367 NVS---GGNMTEMFVQLKLGEQRYKSKTLC--KSANPQWQEQFDFHYFSDRMGILDIEVW 421
Query: 287 NKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIH 346
K + +E LG ++ ++ + + D+ LE L L S
Sbjct: 422 GKDSKKHEERLGTCKVDISALPLKQDN----CLELPLESCQGALLMLITLTPCTGVSISD 477
Query: 347 LRVCLEGAYHVMDESTMYISDQRPTARQLWK--QPIGILEVGILSAQGLLPMKTRDGRGT 404
L VC D S QR + K + +GIL+V +L A LL D G
Sbjct: 478 LCVC-----PFEDPSERQQISQRYAFQNSLKDVKDVGILQVKVLKASDLLAA---DFSGK 529
Query: 405 TDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGTKPD 464
+D +C+ + G ++T T+ N NP+WN+ +T+ + D V+ + VFD G K
Sbjct: 530 SDPFCLLELGNDRLQTHTIYKNLNPEWNKVFTFPIKDIHDVLEVTVFDE-----DGDKAP 584
Query: 465 SRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTCLSLASMIYLYAHP 524
+GKV I L ++ + + V K +L+ A + +IYL
Sbjct: 585 DFLGKVAIPLLSIRDGQPNCY-----------VLKNKDLEQAFK-------GLIYL---- 622
Query: 525 LLPKMHYLHPFTVNQLDSLRYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSK 584
+LD + N V + R P K VE DS S +
Sbjct: 623 --------------ELDLI----YNPVKASI-RTFTPREKRFVE-----DSRKLSKKILS 658
Query: 585 ANFFRIVSLFSGAISMSKWLGEVRYWKNPVTTILVHVLFLILICYPELILPTIFLYMFLI 644
+ R+ L + ++ W++ + + + V+FL+ + E LYM +
Sbjct: 659 RDVDRVKRLTLAIWNTVQFFKSCFQWESTLRSTIAFVVFLVTVWNFE-------LYMIPL 711
Query: 645 GIWNYRFRPRHPPHMDTKLSWADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRI 704
+ P S D+ +++EE ++ + R ++ + +
Sbjct: 712 ALLLLFLYNFLRPMKGKASSTQDSQESTDVEEEGKEEEKESEKKGIIERIYMVQDIVSTV 771
Query: 705 QTVVGDMATQGERFQALLSWRDPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHP 764
Q ++ ++A+ GER + + +W P + L + I V+LY P + I L+ G+
Sbjct: 772 QNILEEVASFGERIKNVFNWTVPFLSLLACLILAITTVILYFIPLRYIILLWGI-----N 826
Query: 765 RFRSKLP---SIPSN----FFRRLPS 783
+F KL SI +N F R+PS
Sbjct: 827 KFTKKLRNPYSIDNNELLDFLSRVPS 852
|
Mus musculus (taxid: 10090) |
| >sp|Q6DN14|MCTP1_HUMAN Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens GN=MCTP1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 91.3 bits (225), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 102/464 (21%), Positives = 194/464 (41%), Gaps = 93/464 (20%)
Query: 53 MFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFSK 109
M+ L + + + + L G+ DPYV+ K+G ++ K H K NP W++
Sbjct: 260 MYQLDITLRRGQSLAARDRGGTSDPYVKFKIGGKEVFRSKIIH--KNLNPVWEEKACILV 317
Query: 110 EKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKV 169
+ ++ L + V D + +DD++G D+ ++ P D L L+D
Sbjct: 318 DHLREP-LYIKVFDYDFGLQDDFMGSAFLDLTQLELNRPTDVTLT-----LKDPHYPDHD 371
Query: 170 KGEVMLAVWIGTQADEA------FPEAW-HSDAATVEGEGV---FNIRSKVYVS------ 213
G ++L+V + + E+ ++W S E E V F+++S + +
Sbjct: 372 LGIILLSVILTPKEGESRDVTMLMRKSWKRSSKELSENEVVGSYFSVKSLFWRTCGRPAL 431
Query: 214 PKLWYLR-----------------------------------VNVIEAQDVEPLDKSQLP 238
P L + R + +IE +D++ +D + L
Sbjct: 432 PVLGFCRAELQNPYCKNVQFQTQSLRLSDLHRKSHLWRGIVSITLIEGRDLKAMDSNGLS 491
Query: 239 QAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLG 298
+V+ ++G+Q K+K+ P +T NP W E F E + +T +K +D+ +G
Sbjct: 492 DPYVKFRLGHQKYKSKIMP-KTLNPQWREQFDFHLYEERGGVIDITAWDKDAGKRDDFIG 550
Query: 299 RLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVM 358
R ++ L+ + R H+ LE+ G G L L + + +
Sbjct: 551 RCQVDLSALSREQTHK----LELQLEE-GEGHLVL------------LVTLTASATVSIS 593
Query: 359 DESTMYISDQRPTARQLWK----------QPIGILEVGILSAQGLLPMKTRDGRGTTDAY 408
D S + DQ+ L + + +G L+V ++ A+GL+ D G +D +
Sbjct: 594 DLSVNSLEDQKEREEILKRYSPLRIFHNLKDVGFLQVKVIRAEGLMAA---DVTGKSDPF 650
Query: 409 CVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFD 452
CV + + T T+ N NP+WN+ +T+ + D +V+ + V+D
Sbjct: 651 CVVELNNDRLLTHTVYKNLNPEWNKVFTFNIKDIHSVLEVTVYD 694
|
Homo sapiens (taxid: 9606) |
| >sp|A0JJX5|SYT4_ARATH Synaptotagmin-4 OS=Arabidopsis thaliana GN=SYT4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 136/322 (42%), Gaps = 50/322 (15%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEV---KLGNYKGKTRHFEKKSNPEWKQVFAFSKEKI 112
L V+V +A+DL + G DPY V L + KT+ NP W + F F E +
Sbjct: 266 LDVKVVQAKDLANKDMIGKSDPYAIVFIRPLPDRTKKTKTISNSLNPIWNEHFEFIVEDV 325
Query: 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNE-VPTRVPPDSPLAPQWYR----LEDRRDDR 167
+ L V V D E VG IG +NE VP +V W + LE +RD +
Sbjct: 326 STQHLTVRVFDDEGVGSSQLIGAAQVPLNELVPGKV------KDIWLKLVKDLEIQRDTK 379
Query: 168 KVKGEVMLAVWIGTQADEAF-------------------PEAWHSDAATVEGEGVFNIRS 208
+G+V L + E PE+ SDA ++ + V + +
Sbjct: 380 N-RGQVQLELLYCPLGKEGGLKNPFNPDYSLTILEKVLKPESEDSDATDMK-KLVTSKKK 437
Query: 209 KVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVL--KTKLCPTRTTNPLWN 266
V V L V V+ A+D+ +D AFV + KT++ P + NP+WN
Sbjct: 438 DVIVRG---VLSVTVVAAEDLPAVDFMGKADAFVVITLKKSETKSKTRVVPD-SLNPVWN 493
Query: 267 EDLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKF 326
+ FV + + L L V + KD+ +GR+ ++L R+ +WF L+
Sbjct: 494 QTFDFVVEDALHDLLTLEVWDHDKFGKDK-IGRVIMTLT----RVMLEGEFQEWFELDGA 548
Query: 327 GFGALELDKRHELKFSSRIHLR 348
G L + LK++ R+ LR
Sbjct: 549 KSGKLCV----HLKWTPRLKLR 566
|
May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|C9J798|RAS4B_HUMAN Putative Ras GTPase-activating protein 4B OS=Homo sapiens GN=RASA4B PE=5 SV=2 | Back alignment and function description |
|---|
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 124/295 (42%), Gaps = 58/295 (19%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSS 115
LY+R+ + ++LP ++GS DPY VK+ N ++ WK + F E+ Q
Sbjct: 7 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEP------IIRTATVWKTLCPFWGEEYQVH 60
Query: 116 V------LEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKV 169
+ + +V D + + RDD IGKV + + + S W L + D +V
Sbjct: 61 LPPTFHAVAFYVMDEDALSRDDVIGKVCLTRDTIASHPKGFS----GWAHLTEVDPDEEV 116
Query: 170 KGEVM--LAVWIGTQADEAFPEAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQ 227
+GE+ L VW G +A LR +V+EA+
Sbjct: 117 QGEIHLRLEVWPGARA---------------------------------CRLRCSVLEAR 143
Query: 228 DVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVEN 287
D+ P D++ FV + + +T + ++ P WNE F E E L + +
Sbjct: 144 DLAPKDRNGTSDPFVRVRYKGRTRETSIV-KKSCYPRWNETFEFELQEGAMEALCVEAWD 202
Query: 288 KVTPAKDEPLGRLRLS---LNVIERR---LDHRPVHSKWFNLEKFGFGALELDKR 336
++++ LG++ + L V+++ +P SK ++ G+L+L+ R
Sbjct: 203 WDLVSRNDFLGKVVIDVQRLRVVQQEEGWFRLQPDQSKSRRHDEGNLGSLQLEVR 257
|
Ca(2+)-dependent Ras GTPase-activating protein, that may play a role in the Ras-MAPK pathway. Homo sapiens (taxid: 9606) |
| >sp|O43374|RASL2_HUMAN Ras GTPase-activating protein 4 OS=Homo sapiens GN=RASA4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 124/295 (42%), Gaps = 58/295 (19%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSS 115
LY+R+ + ++LP ++GS DPY VK+ N ++ WK + F E+ Q
Sbjct: 7 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEP------IIRTATVWKTLCPFWGEEYQVH 60
Query: 116 V------LEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKV 169
+ + +V D + + RDD IGKV + + + S W L + D +V
Sbjct: 61 LPPTFHAVAFYVMDEDALSRDDVIGKVCLTRDTIASHPKGFS----GWAHLTEVDPDEEV 116
Query: 170 KGEVM--LAVWIGTQADEAFPEAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQ 227
+GE+ L VW G +A LR +V+EA+
Sbjct: 117 QGEIHLRLEVWPGARA---------------------------------CRLRCSVLEAR 143
Query: 228 DVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVEN 287
D+ P D++ FV + + +T + ++ P WNE F E E L + +
Sbjct: 144 DLAPKDRNGTSDPFVRVRYKGRTRETSIV-KKSCYPRWNETFEFELQEGAMEALCVEAWD 202
Query: 288 KVTPAKDEPLGRLRLS---LNVIERR---LDHRPVHSKWFNLEKFGFGALELDKR 336
++++ LG++ + L V+++ +P SK ++ G+L+L+ R
Sbjct: 203 WDLVSRNDFLGKVVIDVQRLRVVQQEEGWFRLQPDQSKSRRHDEGNLGSLQLEVR 257
|
Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis. Homo sapiens (taxid: 9606) |
| >sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 16/129 (12%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSS 115
L VRV +AR+LP ++G DPYV ++LG + +T+ +K NP+W + F+F + +
Sbjct: 3 LQVRVVEARNLPAMDLNGFSDPYVRLQLGKQRSRTKVVKKNLNPKWTEDFSFGVDDLNDE 62
Query: 116 VLEVFVRDREIVGRDDYIGKV------VFDMNEVPTRVPPDSPLAPQWYRLE-DRRDDRK 168
++ V V D + DD++G+V VFD + L WY L ++ +K
Sbjct: 63 LV-VSVLDEDKYFNDDFVGQVRVSVSLVFDAE--------NQSLGTVWYPLNPKKKGSKK 113
Query: 169 VKGEVMLAV 177
GE++L +
Sbjct: 114 DCGEILLKI 122
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O43581|SYT7_HUMAN Synaptotagmin-7 OS=Homo sapiens GN=SYT7 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 118/264 (44%), Gaps = 50/264 (18%)
Query: 52 QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKL---GNYKGKTRHFEKKSNPEWKQVFAFS 108
Q L V++ KA++LP SG+ DP+V++ L +K +T+ K NP W + F F
Sbjct: 148 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFE 207
Query: 109 K---EKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165
EK+ +L + V D + R+D IG+V +N+V + + W L+ D
Sbjct: 208 GFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL-----TQMQTFWKDLKPCSD 262
Query: 166 DRKVKGEVMLAVWIGTQADEAFPEAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIE 225
+GE++L++ A+ VN+I+
Sbjct: 263 GSGSRGELLLSLCYNPSANSII---------------------------------VNIIK 289
Query: 226 AQDVEPLDKSQLPQAFVEAQV---GNQVLKTK-LCPTRTTNPLWNEDLIF-VAAEPFEE- 279
A++++ +D +V+ + +V K K + R NP++NE F + E E
Sbjct: 290 ARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTMKRNLNPIFNESFAFDIPTEKLRET 349
Query: 280 QLVLTVENKVTPAKDEPLGRLRLS 303
+++TV +K ++++ +G++ LS
Sbjct: 350 TIIITVMDKDKLSRNDVIGKIYLS 373
|
May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. Homo sapiens (taxid: 9606) |
| >sp|Q9R0N7|SYT7_MOUSE Synaptotagmin-7 OS=Mus musculus GN=Syt7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 115/264 (43%), Gaps = 50/264 (18%)
Query: 52 QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKL---GNYKGKTRHFEKKSNPEWKQVFAFS 108
Q L V+V KA++LP SG+ DP+V++ L +K +T+ K NP W + F F
Sbjct: 148 QESTLTVKVMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFE 207
Query: 109 K---EKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165
EK+ VL + V D + R+D IG+V +N+V + + W L+ D
Sbjct: 208 GFPYEKVVQRVLYLQVLDYDRFSRNDPIGEVSIPLNKVDL-----TQMQTFWKDLKPCSD 262
Query: 166 DRKVKGEVMLAVWIGTQADEAFPEAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIE 225
+GE++L++ A+ VN+I+
Sbjct: 263 GSGSRGELLLSLCYNPSANSII---------------------------------VNIIK 289
Query: 226 AQDVEPLDKSQLPQAFVEA----QVGNQVLKTKLCPTRTTNPLWNEDLIF-VAAEPFEE- 279
A++++ +D +V+ + K + R NP++NE F + E E
Sbjct: 290 ARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRET 349
Query: 280 QLVLTVENKVTPAKDEPLGRLRLS 303
+++TV +K ++++ +G++ LS
Sbjct: 350 TIIITVMDKDKLSRNDVIGKIYLS 373
|
May be involved in Ca(2+)-dependent exocytosis of secretory vesicles through Ca(2+) and phospholipid binding to the C2 domain or may serve as Ca(2+) sensors in the process of vesicular trafficking and exocytosis. Mus musculus (taxid: 10090) |
| >sp|Q6PFQ7|RASL2_MOUSE Ras GTPase-activating protein 4 OS=Mus musculus GN=Rasa4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 122/296 (41%), Gaps = 61/296 (20%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSS 115
L +R+ + ++LP ++GS DPY VK+ N ++ WK + F E Q
Sbjct: 7 LSIRIVEGKNLPAKDITGSSDPYCIVKVDNEP------IIRTATVWKTLCPFWGEDYQVH 60
Query: 116 V------LEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKV 169
+ + +V D + + RDD IGKV + + + S W L + + +V
Sbjct: 61 LPPTFHTVAFYVMDEDALSRDDVIGKVCLTRDALASHPKGFSG----WTHLVEVDPNEEV 116
Query: 170 KGEVMLAVWIGTQADEAFPEAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDV 229
+GE+ L + E P GV R LR V+EA+D+
Sbjct: 117 QGEIHLRL-------EVVP-------------GVHASR-----------LRCAVLEARDL 145
Query: 230 EPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKV 289
P D++ FV + +T + ++ P WNE F + E L++ +
Sbjct: 146 APKDRNGASDPFVRVHYNGRTQETSVV-KKSCYPRWNETFDFELEKGASEALLVEAWDWD 204
Query: 290 TPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLE---------KFGFGALELDKR 336
++++ LG ++++NV +RL WF L+ K G+L+L+ R
Sbjct: 205 LVSRNDFLG--KVAVNV--QRLCSAQQEEGWFRLQPDQSKSRQGKGNLGSLQLEVR 256
|
Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis. Isoform 2 activates the Ras pathway and promotes RANKL shedding by modulating the expression of MMP14. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 789 | ||||||
| 224120240 | 796 | predicted protein [Populus trichocarpa] | 1.0 | 0.991 | 0.873 | 0.0 | |
| 255583260 | 793 | synaptotagmin, putative [Ricinus communi | 0.994 | 0.989 | 0.880 | 0.0 | |
| 359481882 | 794 | PREDICTED: multiple C2 and transmembrane | 0.989 | 0.983 | 0.873 | 0.0 | |
| 147832870 | 794 | hypothetical protein VITISV_010815 [Viti | 0.989 | 0.983 | 0.873 | 0.0 | |
| 395146499 | 793 | putative synaptotagmin protein [Linum us | 1.0 | 0.994 | 0.853 | 0.0 | |
| 297810797 | 794 | hypothetical protein ARALYDRAFT_908616 [ | 0.988 | 0.982 | 0.829 | 0.0 | |
| 334187474 | 794 | C2 calcium/lipid-binding and phosphoribo | 0.988 | 0.982 | 0.829 | 0.0 | |
| 356498472 | 796 | PREDICTED: uncharacterized protein LOC10 | 0.988 | 0.979 | 0.833 | 0.0 | |
| 449464886 | 789 | PREDICTED: multiple C2 and transmembrane | 0.998 | 0.998 | 0.834 | 0.0 | |
| 356537329 | 797 | PREDICTED: multiple C2 and transmembrane | 0.988 | 0.978 | 0.828 | 0.0 |
| >gi|224120240|ref|XP_002330999.1| predicted protein [Populus trichocarpa] gi|222872929|gb|EEF10060.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1448 bits (3748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 695/796 (87%), Positives = 747/796 (93%), Gaps = 7/796 (0%)
Query: 1 MNPLSAPYYQEDYKLKDTKPQLGERWPHGGIRGAGGWISSERATSTYDLVEQMFYLYVRV 60
MNPL+AP +++D+KLKDTKPQLGERWPHGG RG GGWISSERATSTYDLVEQMFYLYVRV
Sbjct: 1 MNPLAAPDHKDDFKLKDTKPQLGERWPHGGPRGGGGWISSERATSTYDLVEQMFYLYVRV 60
Query: 61 EKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVF 120
KA+DLPTNPV+GSCDPY+EVK+GNYKG+T+HFEKK+NPEWKQVFAFSKE+IQSSV+EV
Sbjct: 61 VKAKDLPTNPVTGSCDPYIEVKVGNYKGETQHFEKKTNPEWKQVFAFSKERIQSSVVEVI 120
Query: 121 VRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180
+RDRE V RDD++GKVVFDM+EVPTRVPPDSPLAPQWYRLE D KVKGEVMLAVW+G
Sbjct: 121 LRDRERVKRDDHVGKVVFDMHEVPTRVPPDSPLAPQWYRLEALHGDNKVKGEVMLAVWMG 180
Query: 181 TQADEAFPEAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQA 240
TQADEAFPEAWHSDAA+V EGV NIRSKVYVSPKLWYLRVNVIEAQDVEPLD+SQLPQ
Sbjct: 181 TQADEAFPEAWHSDAASVHREGVLNIRSKVYVSPKLWYLRVNVIEAQDVEPLDRSQLPQV 240
Query: 241 FVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRL 300
FV+AQVGNQ+LKTKLCPTRTTNP+WNEDLIFVAAEPFEEQL+LTVENK +PAKDE +GR+
Sbjct: 241 FVKAQVGNQILKTKLCPTRTTNPMWNEDLIFVAAEPFEEQLILTVENKASPAKDEVVGRV 300
Query: 301 RLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDE 360
L L + ERRLD+RPVHSKWFNLE+FGFGALE DK HELKFS R+HLRVCLEGAYHV+DE
Sbjct: 301 DLPLQIFERRLDYRPVHSKWFNLERFGFGALEGDKGHELKFSVRLHLRVCLEGAYHVLDE 360
Query: 361 STMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRT 420
STMYISDQRPTA QLWKQPIGILEVG+LSAQGLLPMKT++GRGTTDAYCVAKYGLKWVRT
Sbjct: 361 STMYISDQRPTAWQLWKQPIGILEVGVLSAQGLLPMKTKEGRGTTDAYCVAKYGLKWVRT 420
Query: 421 RTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLG-------GSGTKPDSRIGKVRIR 473
RT+++NFNPKWNEQYTWEVYDP TVIT GVFDNCHLG G G + DSRIGKVRIR
Sbjct: 421 RTIIENFNPKWNEQYTWEVYDPSTVITFGVFDNCHLGGGEKPATGGGARIDSRIGKVRIR 480
Query: 474 LSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTCLSLASMIYLYAHPLLPKMHYLH 533
LSTLE DRIYT+SYPLLVL PSG+KKMGELQLAVRFTCLSLA+MIYLY HP+LPKMHYLH
Sbjct: 481 LSTLETDRIYTNSYPLLVLQPSGLKKMGELQLAVRFTCLSLANMIYLYGHPMLPKMHYLH 540
Query: 534 PFTVNQLDSLRYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSL 593
PFTVNQLDSLRYQAMNIVAVRLGRAEPPLRKE+VEYMLDVDSHMWSMRRSKANFFRIVSL
Sbjct: 541 PFTVNQLDSLRYQAMNIVAVRLGRAEPPLRKEIVEYMLDVDSHMWSMRRSKANFFRIVSL 600
Query: 594 FSGAISMSKWLGEVRYWKNPVTTILVHVLFLILICYPELILPTIFLYMFLIGIWNYRFRP 653
FSG IS+SKWLGEV WKNPVTT+LVHVLF IL+CYPELILPTIFLYMFLIGIWNYR RP
Sbjct: 601 FSGVISISKWLGEVCKWKNPVTTVLVHVLFFILVCYPELILPTIFLYMFLIGIWNYRLRP 660
Query: 654 RHPPHMDTKLSWADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMAT 713
RHPPHMDTKLSWA+AVHPDELDEEFDTFPTSKQQDV RMRYDRLRSVAGRIQTV+GDMAT
Sbjct: 661 RHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKQQDVARMRYDRLRSVAGRIQTVMGDMAT 720
Query: 714 QGERFQALLSWRDPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFRSKLPSI 773
QGERFQALLSWRDPRATSLFVIFCLIAAVVLYVTPFKIITLV GLFWLRHPRFRSK PS+
Sbjct: 721 QGERFQALLSWRDPRATSLFVIFCLIAAVVLYVTPFKIITLVTGLFWLRHPRFRSKQPSV 780
Query: 774 PSNFFRRLPSRADTML 789
PSNFFRRLPSRAD+ML
Sbjct: 781 PSNFFRRLPSRADSML 796
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255583260|ref|XP_002532394.1| synaptotagmin, putative [Ricinus communis] gi|223527890|gb|EEF29979.1| synaptotagmin, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1437 bits (3720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 702/797 (88%), Positives = 746/797 (93%), Gaps = 12/797 (1%)
Query: 1 MNPLSAPYYQEDYKLKDTKPQLGERWPHGGIRGAGGWISSERATSTYDLVEQMFYLYVRV 60
MNPL A +ED+KLKDTKPQLGERWPHGG RG GGWISS+RATSTYDLVEQMFYLYVRV
Sbjct: 1 MNPLDA---KEDFKLKDTKPQLGERWPHGGARGGGGWISSDRATSTYDLVEQMFYLYVRV 57
Query: 61 EKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVF 120
KA+DLPTNPV+G+ DPY+EVKLGNY+GKT+HFEKK NPEW QVFAFSK+KIQSSVLEVF
Sbjct: 58 VKAKDLPTNPVTGNIDPYIEVKLGNYRGKTKHFEKKINPEWNQVFAFSKDKIQSSVLEVF 117
Query: 121 VRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180
VRDRE+VGRDDYIGKVVFDM+EVPTRVPPDSPLAP WYRLEDR D KVKGEVMLAVW+G
Sbjct: 118 VRDREMVGRDDYIGKVVFDMHEVPTRVPPDSPLAPLWYRLEDRHKDSKVKGEVMLAVWMG 177
Query: 181 TQADEAFPEAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQA 240
TQADEAFPEAWHSDAATV+GEGV+N+RSKVYVSPKLWYLRVNVIEAQDVEP D+SQ+PQ
Sbjct: 178 TQADEAFPEAWHSDAATVQGEGVYNVRSKVYVSPKLWYLRVNVIEAQDVEPHDRSQMPQV 237
Query: 241 FVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRL 300
FV+AQVGNQVLKTKLCP RT NP WNEDLIFVAAEPFEEQLVLTVENK T AKDE +GRL
Sbjct: 238 FVKAQVGNQVLKTKLCPIRTFNPTWNEDLIFVAAEPFEEQLVLTVENKATSAKDEVMGRL 297
Query: 301 RLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDE 360
L L++ ERRLDHRPVHSKW+NLE+FGFGALE DKRHELKFSSR+HLRVCLEGAYHV+DE
Sbjct: 298 MLPLHIFERRLDHRPVHSKWYNLERFGFGALEGDKRHELKFSSRVHLRVCLEGAYHVLDE 357
Query: 361 STMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRT 420
STMYISDQRPTARQLWK PIGILEVGILSAQGLLPMK ++GRGTTDAYCVAKYGLKWVRT
Sbjct: 358 STMYISDQRPTARQLWKNPIGILEVGILSAQGLLPMKPKEGRGTTDAYCVAKYGLKWVRT 417
Query: 421 RTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGTKP--------DSRIGKVRI 472
RT++++FNPKWNEQYTWEVYDPCTVIT+GVFDNCHLGG+ KP DSRIGKVRI
Sbjct: 418 RTILESFNPKWNEQYTWEVYDPCTVITIGVFDNCHLGGT-EKPASGGGGRGDSRIGKVRI 476
Query: 473 RLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTCLSLASMIYLYAHPLLPKMHYL 532
RLSTLE DRIYTHSYPLLVL PSG+KKMGELQLAVRFTCLSLA+MIYLY HPLLPKMHYL
Sbjct: 477 RLSTLETDRIYTHSYPLLVLQPSGLKKMGELQLAVRFTCLSLANMIYLYGHPLLPKMHYL 536
Query: 533 HPFTVNQLDSLRYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVS 592
HPFTVNQLDSLRYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVS
Sbjct: 537 HPFTVNQLDSLRYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVS 596
Query: 593 LFSGAISMSKWLGEVRYWKNPVTTILVHVLFLILICYPELILPTIFLYMFLIGIWNYRFR 652
LFSG ISMSKWL EV WKNPV+T+LVHVLF ILICYPELILPT+FLYMFLIGIWNYRFR
Sbjct: 597 LFSGVISMSKWLSEVCTWKNPVSTLLVHVLFFILICYPELILPTMFLYMFLIGIWNYRFR 656
Query: 653 PRHPPHMDTKLSWADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMA 712
PRHPPHMDTKLS A+ VHPDELDEEFDTFPTSKQQDV RMRYDRLRSVAGRIQTVVGDMA
Sbjct: 657 PRHPPHMDTKLSCAEVVHPDELDEEFDTFPTSKQQDVARMRYDRLRSVAGRIQTVVGDMA 716
Query: 713 TQGERFQALLSWRDPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFRSKLPS 772
TQGERFQALLSWRDPRATSL+VIFC IAAVVLY+TPFKII LVAGLFWLRHPRFRSKLPS
Sbjct: 717 TQGERFQALLSWRDPRATSLYVIFCFIAAVVLYITPFKIIALVAGLFWLRHPRFRSKLPS 776
Query: 773 IPSNFFRRLPSRADTML 789
+PSNFFRRLPSRAD+ML
Sbjct: 777 VPSNFFRRLPSRADSML 793
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359481882|ref|XP_002277970.2| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1428 bits (3697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/788 (87%), Positives = 737/788 (93%), Gaps = 7/788 (0%)
Query: 9 YQEDYKLKDTKPQLGERWPHGGIRGAGGWISSERATSTYDLVEQMFYLYVRVEKARDLPT 68
+QEDYKLKDT PQLGERWPHGG+RG GGWISS+R TSTYDLVEQM+YLYVRV KA+DLPT
Sbjct: 7 HQEDYKLKDTHPQLGERWPHGGVRGGGGWISSDRVTSTYDLVEQMYYLYVRVVKAKDLPT 66
Query: 69 NPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVG 128
N V+G CDPYVEVKLGNYKGKT HFEKK+NPEW QVFAFSK+KIQSSVLEV+VR+R++V
Sbjct: 67 NAVTGGCDPYVEVKLGNYKGKTMHFEKKTNPEWHQVFAFSKDKIQSSVLEVYVRERDMVS 126
Query: 129 RDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFP 188
RDDY+GKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR D KVKGEVMLAVW+GTQADEAFP
Sbjct: 127 RDDYLGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRGDSKVKGEVMLAVWMGTQADEAFP 186
Query: 189 EAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGN 248
EAWHSDAATV GEGVFNIRSKVYVSPKLWYLRVNVIEAQDVE DK QLPQ FV+AQVGN
Sbjct: 187 EAWHSDAATVHGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVESQDKGQLPQVFVKAQVGN 246
Query: 249 QVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIE 308
QVLKTK CPTRTT+P WNEDL+FVAAEPFEE LV+T+ENK+ P+KDE +GR+ L LN+ E
Sbjct: 247 QVLKTKTCPTRTTSPFWNEDLLFVAAEPFEEMLVMTIENKMGPSKDEVMGRISLPLNIFE 306
Query: 309 RRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQ 368
RR+DHRPVHS+WFNLEKFGFGALE DKRHELKFSSR+HLRVCLEGAYHV+DESTMYISDQ
Sbjct: 307 RRMDHRPVHSRWFNLEKFGFGALEGDKRHELKFSSRVHLRVCLEGAYHVLDESTMYISDQ 366
Query: 369 RPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFN 428
RPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG KWVRTRT++++
Sbjct: 367 RPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGQKWVRTRTILESST 426
Query: 429 PKWNEQYTWEVYDPCTVITLGVFDNCHL-------GGSGTKPDSRIGKVRIRLSTLEADR 481
PKWNEQYTWEVYDPCTVITLGVFDNCHL GG G DSRIGKVRIRLSTLE DR
Sbjct: 427 PKWNEQYTWEVYDPCTVITLGVFDNCHLGGNEKPGGGGGAGKDSRIGKVRIRLSTLETDR 486
Query: 482 IYTHSYPLLVLNPSGVKKMGELQLAVRFTCLSLASMIYLYAHPLLPKMHYLHPFTVNQLD 541
IYTH+YPLLVL+PSGVKKMGELQLAVRFTCLSLA+MIYLY HPLLPKMHYLHPFTVNQLD
Sbjct: 487 IYTHAYPLLVLHPSGVKKMGELQLAVRFTCLSLANMIYLYGHPLLPKMHYLHPFTVNQLD 546
Query: 542 SLRYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSLFSGAISMS 601
SLRYQAM+IVA RLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSLFSG ISMS
Sbjct: 547 SLRYQAMSIVAARLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSLFSGMISMS 606
Query: 602 KWLGEVRYWKNPVTTILVHVLFLILICYPELILPTIFLYMFLIGIWNYRFRPRHPPHMDT 661
+WLGEV WKNPVT++LVHVLF ILICYPELILPTIFLYMFLIGIWNYRFRPRHPPHMDT
Sbjct: 607 RWLGEVCQWKNPVTSVLVHVLFFILICYPELILPTIFLYMFLIGIWNYRFRPRHPPHMDT 666
Query: 662 KLSWADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMATQGERFQAL 721
KLSWA+AVH DELDEEFDTFPTSK QDVV MRYDRLRSVAGRIQTVVGDMATQGERFQ+L
Sbjct: 667 KLSWAEAVHRDELDEEFDTFPTSKPQDVVMMRYDRLRSVAGRIQTVVGDMATQGERFQSL 726
Query: 722 LSWRDPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFRSKLPSIPSNFFRRL 781
LSWRDPRATSL+++FCLIAAVVLYVTPFKI+ LVAGLFWLRHPRFRSK+PS PSNFFRRL
Sbjct: 727 LSWRDPRATSLYIVFCLIAAVVLYVTPFKILALVAGLFWLRHPRFRSKMPSAPSNFFRRL 786
Query: 782 PSRADTML 789
P+R+D+ML
Sbjct: 787 PARSDSML 794
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147832870|emb|CAN75086.1| hypothetical protein VITISV_010815 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1428 bits (3696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 688/788 (87%), Positives = 737/788 (93%), Gaps = 7/788 (0%)
Query: 9 YQEDYKLKDTKPQLGERWPHGGIRGAGGWISSERATSTYDLVEQMFYLYVRVEKARDLPT 68
+QEDYKLKDT PQLGERWPHGG+RG GGWISS+R TSTYDLVEQM+YLYVRV KA+DLPT
Sbjct: 7 HQEDYKLKDTHPQLGERWPHGGVRGGGGWISSDRVTSTYDLVEQMYYLYVRVVKAKDLPT 66
Query: 69 NPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVG 128
N V+G CDPYVEVKLGNYKGKT HFEKK+NPEW QVFAFSK+KIQSSVLEV+VR+R++V
Sbjct: 67 NAVTGGCDPYVEVKLGNYKGKTMHFEKKTNPEWHQVFAFSKDKIQSSVLEVYVRERDMVS 126
Query: 129 RDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFP 188
RDDY+GKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR D KVKGEVMLAVW+GTQADEAFP
Sbjct: 127 RDDYLGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRGDSKVKGEVMLAVWMGTQADEAFP 186
Query: 189 EAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGN 248
EAWHSDAATV GEGVFNIRSKVYVSPKLWYLRVNVIEAQDVE DK QLPQ FV+AQVGN
Sbjct: 187 EAWHSDAATVHGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVESQDKGQLPQVFVKAQVGN 246
Query: 249 QVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIE 308
QVLKTK CPTRTT+P WNEDL+FVAAEPFEE LV+T+ENK+ P+KDE +GR+ L LN+ E
Sbjct: 247 QVLKTKTCPTRTTSPFWNEDLLFVAAEPFEEMLVMTIENKMGPSKDEVMGRISLPLNIFE 306
Query: 309 RRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQ 368
RR+DHRPVHS+WFNLEKFGFGALE DKRHELKFSSR+HLRVCLEGAYHV+DESTMYISDQ
Sbjct: 307 RRMDHRPVHSRWFNLEKFGFGALEGDKRHELKFSSRVHLRVCLEGAYHVLDESTMYISDQ 366
Query: 369 RPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFN 428
RPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG KWVRTRT++++
Sbjct: 367 RPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGQKWVRTRTILESST 426
Query: 429 PKWNEQYTWEVYDPCTVITLGVFDNCHL-------GGSGTKPDSRIGKVRIRLSTLEADR 481
PKWNEQYTWEVYDPCTVITLGVFDNCHL GG G DSRIGKVRIRLSTLE DR
Sbjct: 427 PKWNEQYTWEVYDPCTVITLGVFDNCHLGGNEKPGGGGGAGKDSRIGKVRIRLSTLETDR 486
Query: 482 IYTHSYPLLVLNPSGVKKMGELQLAVRFTCLSLASMIYLYAHPLLPKMHYLHPFTVNQLD 541
IYTH+YPLLVL+PSGVKKMGELQLAVRFTCLSLA+MIYLY HPLLPKMHYLHPFTVNQLD
Sbjct: 487 IYTHAYPLLVLHPSGVKKMGELQLAVRFTCLSLANMIYLYGHPLLPKMHYLHPFTVNQLD 546
Query: 542 SLRYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSLFSGAISMS 601
SLRYQAM+IVA RLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSLFSG ISMS
Sbjct: 547 SLRYQAMSIVAARLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSLFSGMISMS 606
Query: 602 KWLGEVRYWKNPVTTILVHVLFLILICYPELILPTIFLYMFLIGIWNYRFRPRHPPHMDT 661
+WLGEV WKNPVT++LVHVLF ILICYPELILPTIFLYMFLIGIWNYRFRPRHPPHMDT
Sbjct: 607 RWLGEVCQWKNPVTSVLVHVLFFILICYPELILPTIFLYMFLIGIWNYRFRPRHPPHMDT 666
Query: 662 KLSWADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMATQGERFQAL 721
KLSWA+AVH DELDEEFDTFPTSK QDVV MRYDRLRSVAGRIQTVVGDMATQGERFQ+L
Sbjct: 667 KLSWAEAVHRDELDEEFDTFPTSKPQDVVXMRYDRLRSVAGRIQTVVGDMATQGERFQSL 726
Query: 722 LSWRDPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFRSKLPSIPSNFFRRL 781
LSWRDPRATSL+++FCLIAAVVLYVTPFKI+ LVAGLFWLRHPRFRSK+PS PSNFFRRL
Sbjct: 727 LSWRDPRATSLYIVFCLIAAVVLYVTPFKILALVAGLFWLRHPRFRSKMPSAPSNFFRRL 786
Query: 782 PSRADTML 789
P+R+D+ML
Sbjct: 787 PARSDSML 794
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|395146499|gb|AFN53655.1| putative synaptotagmin protein [Linum usitatissimum] | Back alignment and taxonomy information |
|---|
Score = 1402 bits (3629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 677/793 (85%), Positives = 735/793 (92%), Gaps = 4/793 (0%)
Query: 1 MNPLSAPYYQEDYKLKDTKPQLGERWPHGGIRGAGGWISSERATSTYDLVEQMFYLYVRV 60
M P + +ED+KLKDTKPQLGERWPHGG RG GGWISSERATSTYDLVEQMFYLYVRV
Sbjct: 1 MKPGAPDTQKEDFKLKDTKPQLGERWPHGGSRGGGGWISSERATSTYDLVEQMFYLYVRV 60
Query: 61 EKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVF 120
KARDLP NPVSGSCDPYVEVKLGNYKGKT+HFEKK+NPEW QVFAFSKEK+QSSVLEV+
Sbjct: 61 VKARDLPPNPVSGSCDPYVEVKLGNYKGKTQHFEKKTNPEWNQVFAFSKEKLQSSVLEVY 120
Query: 121 VRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180
VRDRE+VGRDDY GKV+FDM+EVPTRVPPDSPLAPQWYRLEDRR + KVKGEVMLAVW+G
Sbjct: 121 VRDREMVGRDDYAGKVIFDMHEVPTRVPPDSPLAPQWYRLEDRRGETKVKGEVMLAVWMG 180
Query: 181 TQADEAFPEAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQA 240
TQADEAFP++WHSDAA+V GEGVF++RSKVYVSPKLWY+RVN+IEAQDVEP DK+Q PQ
Sbjct: 181 TQADEAFPDSWHSDAASVHGEGVFSVRSKVYVSPKLWYIRVNIIEAQDVEPHDKTQQPQV 240
Query: 241 FVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRL 300
FV+AQVG+QVLKTKLCPT+T NP+WNEDLIFVAAEPFEEQLVLT+EN+V P+KDE +GR+
Sbjct: 241 FVKAQVGHQVLKTKLCPTKTPNPVWNEDLIFVAAEPFEEQLVLTLENRVAPSKDEIVGRI 300
Query: 301 RLSLNVIERRLDH-RPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMD 359
L L++ ERRLDH R +HSKWFN+EKFGFG LE DKRHE KFSSRIHLRVCLEG YHV+D
Sbjct: 301 VLPLHIFERRLDHHRSIHSKWFNMEKFGFGVLEADKRHEHKFSSRIHLRVCLEGGYHVLD 360
Query: 360 ESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVR 419
ESTMYISDQRPT+RQLWKQPIG+LEVGILSAQGL PMK D G+TDAYCVAKYGLKWVR
Sbjct: 361 ESTMYISDQRPTSRQLWKQPIGLLEVGILSAQGLQPMKKNDRGGSTDAYCVAKYGLKWVR 420
Query: 420 TRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSG---TKPDSRIGKVRIRLST 476
TRT+V++FNPKWNEQYTWEVYDPCTVITLGVFDNCHLGG G +K D++IGKVRIRLST
Sbjct: 421 TRTIVESFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGGDGGSKNDTKIGKVRIRLST 480
Query: 477 LEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTCLSLASMIYLYAHPLLPKMHYLHPFT 536
LE DRIYT+SYPLLVL PSG+KKMGELQLAVRFTCLSLA MIYLY HPLLPKMHYLHPFT
Sbjct: 481 LETDRIYTNSYPLLVLQPSGLKKMGELQLAVRFTCLSLAHMIYLYGHPLLPKMHYLHPFT 540
Query: 537 VNQLDSLRYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSLFSG 596
VNQLDSLRYQAM IVA RLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSLFSG
Sbjct: 541 VNQLDSLRYQAMRIVATRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSLFSG 600
Query: 597 AISMSKWLGEVRYWKNPVTTILVHVLFLILICYPELILPTIFLYMFLIGIWNYRFRPRHP 656
IS+SKWLGEV WKNPVTTILVHVL ILICYPELILPTIFLYMFLIG+WN+RFRPRHP
Sbjct: 601 VISISKWLGEVCQWKNPVTTILVHVLLFILICYPELILPTIFLYMFLIGLWNFRFRPRHP 660
Query: 657 PHMDTKLSWADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMATQGE 716
PHMDTKLSWA+ V+PDELDEEFDTFPTSK QDVVRMRYDRLRSVAGRIQTVVGD+ATQGE
Sbjct: 661 PHMDTKLSWAEGVNPDELDEEFDTFPTSKAQDVVRMRYDRLRSVAGRIQTVVGDIATQGE 720
Query: 717 RFQALLSWRDPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFRSKLPSIPSN 776
RF ALLSWRDPRATSLFV+FC + AV LYVTPFKI+ LVAGLFWLRHP+FRSKLPS+PSN
Sbjct: 721 RFHALLSWRDPRATSLFVMFCFVTAVALYVTPFKIVALVAGLFWLRHPKFRSKLPSVPSN 780
Query: 777 FFRRLPSRADTML 789
FFRRLPSRAD++L
Sbjct: 781 FFRRLPSRADSLL 793
|
Source: Linum usitatissimum Species: Linum usitatissimum Genus: Linum Family: Linaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297810797|ref|XP_002873282.1| hypothetical protein ARALYDRAFT_908616 [Arabidopsis lyrata subsp. lyrata] gi|297319119|gb|EFH49541.1| hypothetical protein ARALYDRAFT_908616 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1395 bits (3611), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 651/785 (82%), Positives = 718/785 (91%), Gaps = 5/785 (0%)
Query: 10 QEDYKLKDTKPQLGERWPHGGIRGAGGWISSERATSTYDLVEQMFYLYVRVEKARDLPTN 69
QEDYKLKD KP+LGERWPHGG RG GWI SERA STYDLVEQMFYLYVRV KA+DLP N
Sbjct: 10 QEDYKLKDMKPELGERWPHGGQRGGTGWIGSERAASTYDLVEQMFYLYVRVVKAKDLPPN 69
Query: 70 PVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGR 129
PV+ +CDPYVEVK+GNYKGKT+HFEK++NPEW QVFAFSK+K+QSS +EVFVRD+E+V R
Sbjct: 70 PVTSNCDPYVEVKIGNYKGKTKHFEKRTNPEWNQVFAFSKDKVQSSTVEVFVRDKEMVTR 129
Query: 130 DDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFPE 189
D+YIGKVVFDM EVPTRVPPDSPLAPQWYRLEDRR + K +GEVM+AVW+GTQADEAFP+
Sbjct: 130 DEYIGKVVFDMREVPTRVPPDSPLAPQWYRLEDRRGESKKRGEVMVAVWLGTQADEAFPD 189
Query: 190 AWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQ 249
AWHSDA++V+GEGV ++RSKVYVSPKLWYLRVNVIEAQDVEP D+SQ PQAFV+ QVGNQ
Sbjct: 190 AWHSDASSVQGEGVQSVRSKVYVSPKLWYLRVNVIEAQDVEPSDRSQPPQAFVKVQVGNQ 249
Query: 250 VLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIER 309
+LKTKLCP +TTNP+WNEDL+FVAAEPFEEQ LTVENKVTPAKDE +GRL L+V E+
Sbjct: 250 ILKTKLCPNKTTNPMWNEDLVFVAAEPFEEQFFLTVENKVTPAKDEVMGRLISPLSVFEK 309
Query: 310 RLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQR 369
RLDHR VHSKW+NLEKFGFGALE DKRHELKFSSRIHLRVCLEG YHVMDEST+YISD +
Sbjct: 310 RLDHRAVHSKWYNLEKFGFGALEGDKRHELKFSSRIHLRVCLEGGYHVMDESTLYISDVK 369
Query: 370 PTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNP 429
PTARQLWKQPIGILEVGILSAQGL PMKT+DG+ TTD YCVAKYG KWVRTRT+++++NP
Sbjct: 370 PTARQLWKQPIGILEVGILSAQGLSPMKTKDGKATTDPYCVAKYGQKWVRTRTIIESYNP 429
Query: 430 KWNEQYTWEVYDPCTVITLGVFDNCHLGG-----SGTKPDSRIGKVRIRLSTLEADRIYT 484
KWNEQYTWEVYDPCTVITLGVFDNCHLGG SG K DSRIGKVRIRLSTLEADRIYT
Sbjct: 430 KWNEQYTWEVYDPCTVITLGVFDNCHLGGSEKSNSGAKVDSRIGKVRIRLSTLEADRIYT 489
Query: 485 HSYPLLVLNPSGVKKMGELQLAVRFTCLSLASMIYLYAHPLLPKMHYLHPFTVNQLDSLR 544
HSYPLLVL G+KKMGE+QLAVRFTCLSLA MIYLY HPLLPKMHYLHPFTVNQLDSLR
Sbjct: 490 HSYPLLVLQAKGLKKMGEVQLAVRFTCLSLAHMIYLYGHPLLPKMHYLHPFTVNQLDSLR 549
Query: 545 YQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSLFSGAISMSKWL 604
YQAM+IV+ RL RAEPPLRKE+VEYMLDVDSHMWSMRRSKANFFRIVS+FSG I+MSKWL
Sbjct: 550 YQAMSIVSARLARAEPPLRKEIVEYMLDVDSHMWSMRRSKANFFRIVSVFSGLIAMSKWL 609
Query: 605 GEVRYWKNPVTTILVHVLFLILICYPELILPTIFLYMFLIGIWNYRFRPRHPPHMDTKLS 664
G+V YWKNP+T+IL HVLF ILICYPELILPT FLYMFLIG+WN+RFR RHP HMD KLS
Sbjct: 610 GDVCYWKNPLTSILFHVLFFILICYPELILPTTFLYMFLIGLWNFRFRTRHPAHMDIKLS 669
Query: 665 WADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMATQGERFQALLSW 724
WA+A PDELDEEFDTFPTSK QDVV+MRYDRLRSVAGRIQ VVGD+ATQGERFQALLSW
Sbjct: 670 WAEAASPDELDEEFDTFPTSKGQDVVKMRYDRLRSVAGRIQMVVGDIATQGERFQALLSW 729
Query: 725 RDPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFRSKLPSIPSNFFRRLPSR 784
RDPRAT LFVIFCL+AA++LYVTPFKII L AG+FW+RHP+FRSK+PS PSNFFR+LPS+
Sbjct: 730 RDPRATCLFVIFCLVAAMILYVTPFKIIALAAGMFWMRHPKFRSKMPSAPSNFFRKLPSK 789
Query: 785 ADTML 789
AD ML
Sbjct: 790 ADCML 794
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334187474|ref|NP_568175.2| C2 calcium/lipid-binding and phosphoribosyltransferase C-terminal domain-containing protein [Arabidopsis thaliana] gi|9759541|dbj|BAB11143.1| anthranilate phosphoribosyltransferase-like protein [Arabidopsis thaliana] gi|332003692|gb|AED91075.1| C2 calcium/lipid-binding and phosphoribosyltransferase C-terminal domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1392 bits (3602), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 651/785 (82%), Positives = 716/785 (91%), Gaps = 5/785 (0%)
Query: 10 QEDYKLKDTKPQLGERWPHGGIRGAGGWISSERATSTYDLVEQMFYLYVRVEKARDLPTN 69
QEDYKLKD KP+LGERWPHGG RG GWI SERA STYDLVEQMFYLYVRV KA+DLP N
Sbjct: 10 QEDYKLKDMKPELGERWPHGGQRGGTGWIGSERAASTYDLVEQMFYLYVRVVKAKDLPPN 69
Query: 70 PVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGR 129
PV+ +CDPYVEVK+GNYKGKT+HFEK++NPEW QVFAFSK+K+QSS +EVFVRD+E+V R
Sbjct: 70 PVTSNCDPYVEVKIGNYKGKTKHFEKRTNPEWNQVFAFSKDKVQSSTVEVFVRDKEMVTR 129
Query: 130 DDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFPE 189
D+YIGKVVFDM EVPTRVPPDSPLAPQWYRLEDRR + K +GEVM+AVW+GTQADEAFP+
Sbjct: 130 DEYIGKVVFDMREVPTRVPPDSPLAPQWYRLEDRRGESKKRGEVMVAVWLGTQADEAFPD 189
Query: 190 AWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQ 249
AWHSDA++V+GEGV ++RSKVYVSPKLWYLRVNVIEAQDVEP D+SQ PQAFV+ QVGNQ
Sbjct: 190 AWHSDASSVQGEGVQSVRSKVYVSPKLWYLRVNVIEAQDVEPSDRSQPPQAFVKVQVGNQ 249
Query: 250 VLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIER 309
+LKTKLCP +TTNP+WNEDL+FVAAEPFEEQ LTVENKVTPAKDE +GRL L+V E+
Sbjct: 250 ILKTKLCPNKTTNPMWNEDLVFVAAEPFEEQFFLTVENKVTPAKDEVMGRLISPLSVFEK 309
Query: 310 RLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQR 369
RLDHR VHSKW+NLEKFGFGALE DKRHELKFSSRIHLRVCLEG YHVMDEST+YISD +
Sbjct: 310 RLDHRAVHSKWYNLEKFGFGALEGDKRHELKFSSRIHLRVCLEGGYHVMDESTLYISDVK 369
Query: 370 PTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNP 429
PTARQLWK PIGILEVGILSAQGL PMKT+DG+ TTD YCVAKYG KWVRTRT++D+ +P
Sbjct: 370 PTARQLWKSPIGILEVGILSAQGLSPMKTKDGKATTDPYCVAKYGQKWVRTRTIIDSSSP 429
Query: 430 KWNEQYTWEVYDPCTVITLGVFDNCHLGG-----SGTKPDSRIGKVRIRLSTLEADRIYT 484
KWNEQYTWEVYDPCTVITLGVFDNCHLGG SG K DSRIGKVRIRLSTLEADRIYT
Sbjct: 430 KWNEQYTWEVYDPCTVITLGVFDNCHLGGSEKSNSGAKVDSRIGKVRIRLSTLEADRIYT 489
Query: 485 HSYPLLVLNPSGVKKMGELQLAVRFTCLSLASMIYLYAHPLLPKMHYLHPFTVNQLDSLR 544
HSYPLLVL G+KKMGE+QLAVRFTCLSLA MIYLY HPLLPKMHYLHPFTVNQLDSLR
Sbjct: 490 HSYPLLVLQTKGLKKMGEVQLAVRFTCLSLAHMIYLYGHPLLPKMHYLHPFTVNQLDSLR 549
Query: 545 YQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSLFSGAISMSKWL 604
YQAM+IVA RL RAEPPLRKE VEYMLDVDSHMWSMRRSKANFFRIVS+F+G I+MSKWL
Sbjct: 550 YQAMSIVAARLSRAEPPLRKENVEYMLDVDSHMWSMRRSKANFFRIVSVFAGLIAMSKWL 609
Query: 605 GEVRYWKNPVTTILVHVLFLILICYPELILPTIFLYMFLIGIWNYRFRPRHPPHMDTKLS 664
G+V YWKNP+TTIL HVLF ILICYPELILPT FLYMFLIG+WN+RFRPRHP HMDTK+S
Sbjct: 610 GDVCYWKNPLTTILFHVLFFILICYPELILPTTFLYMFLIGLWNFRFRPRHPAHMDTKVS 669
Query: 665 WADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMATQGERFQALLSW 724
WA+A PDELDEEFDTFPTSK QDVV+MRYDRLRSVAGRIQ VVGD+ATQGERFQALLSW
Sbjct: 670 WAEAASPDELDEEFDTFPTSKGQDVVKMRYDRLRSVAGRIQMVVGDIATQGERFQALLSW 729
Query: 725 RDPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFRSKLPSIPSNFFRRLPSR 784
RDPRAT LFVIFCL+AA++LYVTPFKII L G+FW+RHP+FRSK+PS PSNFFR+LPS+
Sbjct: 730 RDPRATCLFVIFCLVAAMILYVTPFKIIALAGGMFWMRHPKFRSKMPSAPSNFFRKLPSK 789
Query: 785 ADTML 789
AD ML
Sbjct: 790 ADCML 794
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356498472|ref|XP_003518076.1| PREDICTED: uncharacterized protein LOC100814611 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1387 bits (3590), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 654/785 (83%), Positives = 716/785 (91%), Gaps = 5/785 (0%)
Query: 10 QEDYKLKDTKPQLGERWPHGGIRGAGGWISSERATSTYDLVEQMFYLYVRVEKARDLPTN 69
QEDYKLKDTKP+LGE+WPHGG RG GWI +ERATSTYDLVEQMFYLYVRV KA+DLP N
Sbjct: 12 QEDYKLKDTKPELGEKWPHGGQRGGSGWIYNERATSTYDLVEQMFYLYVRVVKAKDLPPN 71
Query: 70 PVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGR 129
PV+ + DPYVEVK+GNYKGKTRHFEKK++PEWKQVFAFSKEKIQSSV+EVFVRD+E+V R
Sbjct: 72 PVTSNVDPYVEVKVGNYKGKTRHFEKKTSPEWKQVFAFSKEKIQSSVVEVFVRDKEMVAR 131
Query: 130 DDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFPE 189
DDYIGKV FD++EVPTRVPPDSPLAPQWYRLE+ R + + +GE+MLAVW+GTQADEAFPE
Sbjct: 132 DDYIGKVEFDIHEVPTRVPPDSPLAPQWYRLENLRGEARSRGEIMLAVWMGTQADEAFPE 191
Query: 190 AWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQ 249
AWHSD+A+V+G+GV+NIRSKVYV+PKLWYLRVNVIEAQDVEP DKSQ PQ FV+ QVG Q
Sbjct: 192 AWHSDSASVKGDGVYNIRSKVYVNPKLWYLRVNVIEAQDVEPNDKSQPPQVFVKGQVGQQ 251
Query: 250 VLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIER 309
VLKTKLCPT+T NP+WNEDL+FVAAEPFEE+LVLTVENK +P KDE R+ L LN E
Sbjct: 252 VLKTKLCPTKTPNPMWNEDLVFVAAEPFEEKLVLTVENKASPGKDEVAARISLPLNKFEI 311
Query: 310 RLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQR 369
LDHR VHS W+NLE+FGFG LE DKR+E KFSSRIHLRVCLEGAYHV+DESTMYISD R
Sbjct: 312 LLDHRAVHSHWYNLERFGFGVLEGDKRNESKFSSRIHLRVCLEGAYHVLDESTMYISDTR 371
Query: 370 PTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNP 429
PTARQLWKQPIGILEVGILSAQGL MKT +G+G+TDAYCVAKYG KWVRTRT+ ++FNP
Sbjct: 372 PTARQLWKQPIGILEVGILSAQGLQSMKTNNGKGSTDAYCVAKYGQKWVRTRTITESFNP 431
Query: 430 KWNEQYTWEVYDPCTVITLGVFDNCHLGGSG-----TKPDSRIGKVRIRLSTLEADRIYT 484
KWNEQYTWEVYDPCTVIT GVFDNCHLGG G K DS+IGKVRIRLSTLE DRIYT
Sbjct: 432 KWNEQYTWEVYDPCTVITFGVFDNCHLGGGGGQTQVAKVDSKIGKVRIRLSTLEMDRIYT 491
Query: 485 HSYPLLVLNPSGVKKMGELQLAVRFTCLSLASMIYLYAHPLLPKMHYLHPFTVNQLDSLR 544
+SYPLLVL SG+KKMGELQLA+RFTCLS+A +IYLY HPLLPKMHYLHPFTVNQLDSLR
Sbjct: 492 NSYPLLVLKTSGLKKMGELQLAIRFTCLSMAHIIYLYGHPLLPKMHYLHPFTVNQLDSLR 551
Query: 545 YQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSLFSGAISMSKWL 604
YQAMNIV VRLGRAEPPLRKEVVEYMLDVDSH+WSMRRSKANFFRIVSLFSGAISMSKWL
Sbjct: 552 YQAMNIVVVRLGRAEPPLRKEVVEYMLDVDSHIWSMRRSKANFFRIVSLFSGAISMSKWL 611
Query: 605 GEVRYWKNPVTTILVHVLFLILICYPELILPTIFLYMFLIGIWNYRFRPRHPPHMDTKLS 664
GEV+ WKNPVTTILVHVLF ILICYPELILPT+FLYMFLIGIWN+RFRPRHPPHMDTKLS
Sbjct: 612 GEVQQWKNPVTTILVHVLFFILICYPELILPTMFLYMFLIGIWNFRFRPRHPPHMDTKLS 671
Query: 665 WADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMATQGERFQALLSW 724
WA+A HPDELDEEFDTFPTSK QDV+RMRYDRLRSVAGRIQTVVGD+ATQGERF ALLSW
Sbjct: 672 WAEAAHPDELDEEFDTFPTSKAQDVIRMRYDRLRSVAGRIQTVVGDIATQGERFHALLSW 731
Query: 725 RDPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFRSKLPSIPSNFFRRLPSR 784
RDPRATSLFVIFCL+ AV LYVTPFK++ VAG+FWLRHPRFRSKLPS+PSNFF+RLPS
Sbjct: 732 RDPRATSLFVIFCLVVAVALYVTPFKVVASVAGIFWLRHPRFRSKLPSMPSNFFKRLPSC 791
Query: 785 ADTML 789
D ML
Sbjct: 792 VDGML 796
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449464886|ref|XP_004150160.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like [Cucumis sativus] gi|449476358|ref|XP_004154715.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1385 bits (3584), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 659/790 (83%), Positives = 727/790 (92%), Gaps = 2/790 (0%)
Query: 1 MNPLSAPYYQEDYKLKDTKPQLGERWPHGGIRGAGGWISSERATSTYDLVEQMFYLYVRV 60
M+ +A + DYKLKDTKP LGERWPHGGIRG GGWI+SERATSTYDLVEQMFYLYVRV
Sbjct: 1 MSSPAAGDKEADYKLKDTKPNLGERWPHGGIRGGGGWITSERATSTYDLVEQMFYLYVRV 60
Query: 61 EKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWK-QVFAFSKEKIQSSVLEV 119
KA+DLP +PV+GSCDPYVEVKLGNYKG+T+HFEKK+NPEW QVFAFSK+KIQS+VLEV
Sbjct: 61 VKAKDLPPDPVTGSCDPYVEVKLGNYKGRTQHFEKKTNPEWNNQVFAFSKDKIQSTVLEV 120
Query: 120 FVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179
FVRD+E+V RD Y+GKVVFD+NEVPTRVPPDSPLAPQWY+LEDR+ D KVKGE+MLAVW+
Sbjct: 121 FVRDKEMVPRDQYVGKVVFDLNEVPTRVPPDSPLAPQWYKLEDRKGDTKVKGEIMLAVWM 180
Query: 180 GTQADEAFPEAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQ 239
GTQADEAFP+AWHSDAA+V GEG++NIRSKVYVSPKLWYLRVNVIEAQDVEP DKSQ PQ
Sbjct: 181 GTQADEAFPDAWHSDAASVHGEGIYNIRSKVYVSPKLWYLRVNVIEAQDVEPQDKSQPPQ 240
Query: 240 AFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLGR 299
AF + QVG Q+LKTKLC T+TTNP+WNEDLIFV AEPFEEQLVLTVENKV+ AKDE +GR
Sbjct: 241 AFAKIQVGKQILKTKLCSTKTTNPVWNEDLIFVVAEPFEEQLVLTVENKVSSAKDEVVGR 300
Query: 300 LRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMD 359
L LN ERRLDHR VHS+WFNLEKFGFG LE DKRHELKFSSR+HLRVCLEGAYHVMD
Sbjct: 301 LITQLNGFERRLDHRVVHSRWFNLEKFGFGTLEGDKRHELKFSSRVHLRVCLEGAYHVMD 360
Query: 360 ESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVR 419
ESTMYISD RPTARQLWKQPIGI EVGILSAQGL PMK DG+G+TDAYCVAKYG KWVR
Sbjct: 361 ESTMYISDVRPTARQLWKQPIGIFEVGILSAQGLQPMKKNDGKGSTDAYCVAKYGQKWVR 420
Query: 420 TRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEA 479
TRT+ D+FNPKWNEQYTWEVYDPCTVIT+GVFDNCHLGG+ K DSRIGKVRIRLSTLE
Sbjct: 421 TRTVTDSFNPKWNEQYTWEVYDPCTVITIGVFDNCHLGGND-KNDSRIGKVRIRLSTLEM 479
Query: 480 DRIYTHSYPLLVLNPSGVKKMGELQLAVRFTCLSLASMIYLYAHPLLPKMHYLHPFTVNQ 539
DRIYTHSYPLLVL PSG+KKMGELQLAVRFTCLSLA +IYLY HPLLPKMHYLHPFTVNQ
Sbjct: 480 DRIYTHSYPLLVLQPSGLKKMGELQLAVRFTCLSLAHIIYLYGHPLLPKMHYLHPFTVNQ 539
Query: 540 LDSLRYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSLFSGAIS 599
LDSLR+QAM+IVA RL RAEP LRKEVVEYMLDVDSHMWSMRRSKANFFRIV+LFSG IS
Sbjct: 540 LDSLRFQAMSIVATRLARAEPSLRKEVVEYMLDVDSHMWSMRRSKANFFRIVALFSGIIS 599
Query: 600 MSKWLGEVRYWKNPVTTILVHVLFLILICYPELILPTIFLYMFLIGIWNYRFRPRHPPHM 659
M++WLGEV WKNP+T++LVH+L+ ILIC+PELILPT FLYMFLIGIWN+RFRPRHPPHM
Sbjct: 600 MNRWLGEVCQWKNPITSVLVHILYFILICFPELILPTTFLYMFLIGIWNFRFRPRHPPHM 659
Query: 660 DTKLSWADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMATQGERFQ 719
D KLSWA+AVH DELDEEFDTFPTSK QDV RMRYDRLRSVAGRIQTVVGD+ATQGERF+
Sbjct: 660 DIKLSWAEAVHADELDEEFDTFPTSKTQDVARMRYDRLRSVAGRIQTVVGDIATQGERFK 719
Query: 720 ALLSWRDPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFRSKLPSIPSNFFR 779
ALLSWRDPRATSL+V+FCL+ A+ LY+TPFKI+ LVAG++WLRHP+FRSK+PS+PSNFFR
Sbjct: 720 ALLSWRDPRATSLYVVFCLLVAIALYITPFKIVALVAGVYWLRHPKFRSKMPSVPSNFFR 779
Query: 780 RLPSRADTML 789
RLPSRAD++L
Sbjct: 780 RLPSRADSLL 789
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356537329|ref|XP_003537180.1| PREDICTED: multiple C2 and transmembrane domain-containing protein 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1384 bits (3583), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 651/786 (82%), Positives = 714/786 (90%), Gaps = 6/786 (0%)
Query: 10 QEDYKLKDTKPQLGERWPHGGIRGAGGWISSERATSTYDLVEQMFYLYVRVEKARDLPTN 69
QEDYKLKDTKP+LGE+WPHGG RG GWI SERATSTYD+VEQMFYLYVRV KA+DLP N
Sbjct: 12 QEDYKLKDTKPELGEKWPHGGQRGGSGWIYSERATSTYDMVEQMFYLYVRVVKAKDLPPN 71
Query: 70 PVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGR 129
PV+ + DPYVEVK+GNYKGKTRHFEKK++PEWKQVFAFSKEKIQSSV+EVFVRD+E+V R
Sbjct: 72 PVTSNVDPYVEVKVGNYKGKTRHFEKKTSPEWKQVFAFSKEKIQSSVVEVFVRDKEMVAR 131
Query: 130 DDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFPE 189
DDYIGKV FDM+EVPTRVPPDSPLAPQWYRLE+ R + + +GE+MLAVW+GTQADEAFPE
Sbjct: 132 DDYIGKVEFDMHEVPTRVPPDSPLAPQWYRLENSRGEARSRGEIMLAVWMGTQADEAFPE 191
Query: 190 AWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQ 249
AWHSD+A+V+GEGV+NIRSKVYV+PKLWYLRVNVIEAQDVEP DKSQ PQ FV+ QVG Q
Sbjct: 192 AWHSDSASVKGEGVYNIRSKVYVNPKLWYLRVNVIEAQDVEPNDKSQPPQVFVKGQVGQQ 251
Query: 250 VLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIER 309
VLKTKLCPT+T NP+WNEDL+FVAAEPFEE+LV+TVENK +P KDE + R+ L LN E
Sbjct: 252 VLKTKLCPTKTPNPMWNEDLVFVAAEPFEEKLVITVENKASPGKDEVVARISLPLNKFEI 311
Query: 310 RLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQR 369
RLDHR VHS W+NLE+FGFG LE DKR+E KFSSRIHLRVCLEGAYHV+DESTMYISD R
Sbjct: 312 RLDHRAVHSHWYNLERFGFGVLEGDKRNETKFSSRIHLRVCLEGAYHVLDESTMYISDTR 371
Query: 370 PTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNP 429
PTARQLWKQPIGILEVGILSAQGL MK + +G+TDAYCVAKYG KWVRTRT+ ++FNP
Sbjct: 372 PTARQLWKQPIGILEVGILSAQGLQSMKKNNAKGSTDAYCVAKYGQKWVRTRTITESFNP 431
Query: 430 KWNEQYTWEVYDPCTVITLGVFDNCHL------GGSGTKPDSRIGKVRIRLSTLEADRIY 483
KWNEQYTWEVYDPCTVIT GVFDNCHL G K DS+IGKVRIRLSTLE DRIY
Sbjct: 432 KWNEQYTWEVYDPCTVITFGVFDNCHLGGGGGGQNQGAKVDSKIGKVRIRLSTLEMDRIY 491
Query: 484 THSYPLLVLNPSGVKKMGELQLAVRFTCLSLASMIYLYAHPLLPKMHYLHPFTVNQLDSL 543
T+SYPLLVL SG+KKMGELQLA+RFTCLS+A +IYLY HPLLPKMHYLHPFTVNQLDSL
Sbjct: 492 TNSYPLLVLKTSGLKKMGELQLAIRFTCLSMAHIIYLYGHPLLPKMHYLHPFTVNQLDSL 551
Query: 544 RYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSLFSGAISMSKW 603
RYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSH+WSMRRSKANFFRIVSLFSGAISMS+W
Sbjct: 552 RYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHIWSMRRSKANFFRIVSLFSGAISMSRW 611
Query: 604 LGEVRYWKNPVTTILVHVLFLILICYPELILPTIFLYMFLIGIWNYRFRPRHPPHMDTKL 663
LGEV+ WKNPVTTILVHVLF ILICYPELILPT FLYMFLIGIWN+RFRPRHPPHMDTKL
Sbjct: 612 LGEVQQWKNPVTTILVHVLFFILICYPELILPTFFLYMFLIGIWNFRFRPRHPPHMDTKL 671
Query: 664 SWADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMATQGERFQALLS 723
SWA+A HPDELDEEFDTFPTSK QDV+RMRYDRLRSVAGRIQTVVGD+ATQGERF ALLS
Sbjct: 672 SWAEAAHPDELDEEFDTFPTSKAQDVIRMRYDRLRSVAGRIQTVVGDIATQGERFHALLS 731
Query: 724 WRDPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFRSKLPSIPSNFFRRLPS 783
WRDPRATSLF+ FCLI AV LYVTPFK++ +AG+FWLRHPRFRSKLPS+PSNFF+RLPS
Sbjct: 732 WRDPRATSLFMFFCLIVAVALYVTPFKVVASIAGIFWLRHPRFRSKLPSVPSNFFKRLPS 791
Query: 784 RADTML 789
AD ML
Sbjct: 792 HADGML 797
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 789 | ||||||
| TAIR|locus:2162712 | 1036 | AT5G48060 "AT5G48060" [Arabido | 0.977 | 0.744 | 0.730 | 0.0 | |
| TAIR|locus:2095853 | 773 | AT3G57880 "AT3G57880" [Arabido | 0.965 | 0.985 | 0.709 | 9.90000001115e-316 | |
| TAIR|locus:2182305 | 769 | AT5G12970 "AT5G12970" [Arabido | 0.949 | 0.973 | 0.713 | 8.3e-312 | |
| TAIR|locus:2017627 | 776 | AT1G51570 [Arabidopsis thalian | 0.968 | 0.984 | 0.692 | 4.6e-311 | |
| TAIR|locus:2139727 | 1011 | AT4G11610 "AT4G11610" [Arabido | 0.972 | 0.758 | 0.656 | 6.7e-294 | |
| TAIR|locus:2009492 | 1029 | AT1G22610 "AT1G22610" [Arabido | 0.989 | 0.758 | 0.607 | 3.5e-272 | |
| TAIR|locus:2127103 | 1006 | AT4G00700 "AT4G00700" [Arabido | 0.974 | 0.764 | 0.579 | 6e-254 | |
| TAIR|locus:2020280 | 1012 | AT1G04150 "AT1G04150" [Arabido | 0.956 | 0.746 | 0.569 | 3.5e-242 | |
| TAIR|locus:2119742 | 774 | AT4G20080 [Arabidopsis thalian | 0.941 | 0.959 | 0.561 | 1.1e-236 | |
| TAIR|locus:2098846 | 972 | AT3G61300 "AT3G61300" [Arabido | 0.923 | 0.75 | 0.559 | 4.4e-235 |
| TAIR|locus:2162712 AT5G48060 "AT5G48060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3111 (1100.2 bits), Expect = 0., P = 0.
Identities = 574/786 (73%), Positives = 678/786 (86%)
Query: 11 EDYKLKDTKPQLGERWPHGGIRGAGGWISSERATSTYDLVEQMFYLYVRVEKARDLPTNP 70
+D+K+KD LGERWP+ AG ER T TYDLVEQMFYLYVRV KA++LP
Sbjct: 259 DDFKVKDMNLDLGERWPNPN---AG-----ERFTGTYDLVEQMFYLYVRVVKAKELPPGS 310
Query: 71 VSGSCDPYVEVKLGNYKGKTRHFEKKSN-PEWKQVFAFSKEKIQSSVLEVFVRDREIVGR 129
++G CDPYVEVKLGNYKG+T+ F++K+ PEW QVFAF+KE+IQSSVLEVFV+D+E +GR
Sbjct: 311 ITGGCDPYVEVKLGNYKGRTKIFDRKTTIPEWNQVFAFTKERIQSSVLEVFVKDKETLGR 370
Query: 130 DDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKV-KGEVMLAVWIGTQADEAFP 188
DD +GKVVFD+NE+PTRVPP+SPLAPQWYRLED R + KV +GE+MLAVW+GTQADEAFP
Sbjct: 371 DDILGKVVFDLNEIPTRVPPNSPLAPQWYRLEDWRGEGKVVRGEIMLAVWMGTQADEAFP 430
Query: 189 EAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGN 248
EAWH+D+A+V GEGVFNIRSKVYVSPKLWYLRVNVIEAQD+ P D+++LP FV+A VG
Sbjct: 431 EAWHADSASVHGEGVFNIRSKVYVSPKLWYLRVNVIEAQDMIPSDRNRLPDVFVKASVGM 490
Query: 249 QVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIE 308
Q LKT +C +TTNPLW EDL+FV AEPFEEQLV++VE++V +KDE +G++ L +NV E
Sbjct: 491 QTLKTSICSIKTTNPLWKEDLVFVVAEPFEEQLVISVEDRVHTSKDEVIGKITLPMNVFE 550
Query: 309 RRLDHRPVHSKWFNLEKFGFGALELD-KRHELKFSSRIHLRVCLEGAYHVMDESTMYISD 367
+RLDHRPVHS+WFNL+K+G G LE D +R E KFSSRIHLR+CLEG YHVMDESTMYISD
Sbjct: 551 KRLDHRPVHSRWFNLDKYGTGVLEPDARRKEHKFSSRIHLRICLEGGYHVMDESTMYISD 610
Query: 368 QRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNF 427
RPTARQLWKQP+G+LE+GIL A GL+PMK +DGRG+T+AYCVAKYG KWVRTRT++D
Sbjct: 611 TRPTARQLWKQPVGMLEIGILGANGLVPMKLKDGRGSTNAYCVAKYGQKWVRTRTILDTL 670
Query: 428 NPKWNEQYTWEVYDPCTVITLGVFDNCHLGG--SGTKP--DSRIGKVRIRLSTLEADRIY 483
+P+WNEQYTWEVYDPCTVITLGVFDN HLG SGT D+RIGKVRIRLSTLEA +IY
Sbjct: 671 SPRWNEQYTWEVYDPCTVITLGVFDNSHLGSAQSGTADSRDARIGKVRIRLSTLEAHKIY 730
Query: 484 THSYPLLVLNPSGVKKMGELQLAVRFTCLSLASMIYLYAHPLLPKMHYLHPFTVNQLDSL 543
THS+PLLVL P G+KK G+LQ++VRFT LSLA++IY Y HPLLPKMHYL PFTVNQ+D L
Sbjct: 731 THSFPLLVLQPHGLKKTGDLQISVRFTTLSLANIIYNYGHPLLPKMHYLFPFTVNQVDGL 790
Query: 544 RYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSLFSGAISMSKW 603
RYQAMNIV+ RLGRAEPPLRKEVVEYMLDVDSH+WSMRRSKANFFRI+SL SG + KW
Sbjct: 791 RYQAMNIVSTRLGRAEPPLRKEVVEYMLDVDSHLWSMRRSKANFFRIMSLLSGYFLVGKW 850
Query: 604 LGEVRYWKNPVTTILVHVLFLILICYPELILPTIFLYMFLIGIWNYRFRPRHPPHMDTKL 663
L +V W+ PVT++LV+VLF IL+ YPELILPT+FLYMF IG+WN+R RPRHPPHMD KL
Sbjct: 851 LEDVCNWRYPVTSVLVNVLFFILVMYPELILPTMFLYMFFIGLWNFRSRPRHPPHMDMKL 910
Query: 664 SWADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMATQGERFQALLS 723
SWA+AV PDELDEEFDTFPTS+ Q++VR+RYDRLRSVAGRIQTVVGD+A QGER Q+LLS
Sbjct: 911 SWAEAVGPDELDEEFDTFPTSRSQELVRLRYDRLRSVAGRIQTVVGDIAAQGERIQSLLS 970
Query: 724 WRDPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFRSKLPSIPSNFFRRLPS 783
WRDPRATSLF++FCL A+VVLY PFK I L +GL++LRHP+FRSKLPS+PSNFF+RLPS
Sbjct: 971 WRDPRATSLFILFCLAASVVLYAMPFKAIALASGLYYLRHPKFRSKLPSLPSNFFKRLPS 1030
Query: 784 RADTML 789
D++L
Sbjct: 1031 STDSLL 1036
|
|
| TAIR|locus:2095853 AT3G57880 "AT3G57880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3028 (1071.0 bits), Expect = 9.9e-316, P = 9.9e-316
Identities = 556/784 (70%), Positives = 669/784 (85%)
Query: 11 EDYKLKDTKPQLGERWPHGGIRGAGGWISSERATSTYDLVEQMFYLYVRVEKARDLPTNP 70
ED+ LK+T+P LG GG +S ++ TSTYDLVEQM YLYVRV KA++LP
Sbjct: 7 EDFSLKETRPHLG-----------GGKLSGDKLTSTYDLVEQMQYLYVRVVKAKELPGKD 55
Query: 71 VSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRD 130
++GSCDPYVEVKLGNYKG TRHFEKKSNPEW QVFAFSK++IQ+S LE V+D++ V +D
Sbjct: 56 MTGSCDPYVEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASFLEATVKDKDFV-KD 114
Query: 131 DYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFPEA 190
D IG+VVFD+NEVP RVPPDSPLAPQWYRLEDR+ D KVKGE+MLAVW GTQADEAFPEA
Sbjct: 115 DLIGRVVFDLNEVPKRVPPDSPLAPQWYRLEDRKGD-KVKGELMLAVWFGTQADEAFPEA 173
Query: 191 WHSDAATVEG-EGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQ 249
WHSDAATV G + + NIRSKVY+SPKLWYLRVNVIEAQD+ P DK + P+ +V+A VGNQ
Sbjct: 174 WHSDAATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPTDKQRYPEVYVKAIVGNQ 233
Query: 250 VLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIER 309
L+T++ +RT NP+WNEDL+FVAAEPFEE L+L+VE++V P KDE LGR + L ++R
Sbjct: 234 ALRTRVSQSRTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIPLQYLDR 293
Query: 310 RLDHRPVHSKWFNLEKFGFGALELD-KRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQ 368
R DH+PV+S+W+NLEK + +D ++ E KF+SRIH+R+CLEG YHV+DEST Y SD
Sbjct: 294 RFDHKPVNSRWYNLEKH----IMVDGEKKETKFASRIHMRICLEGGYHVLDESTHYSSDL 349
Query: 369 RPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFN 428
RPTA+QLWK IG+LE+GIL+A GL+PMKT+DGRGTTDAYCVAKYG KW+RTRT++D+F
Sbjct: 350 RPTAKQLWKPNIGVLELGILNATGLMPMKTKDGRGTTDAYCVAKYGQKWIRTRTIIDSFT 409
Query: 429 PKWNEQYTWEVYDPCTVITLGVFDNCHL-GGS--GTKPDSRIGKVRIRLSTLEADRIYTH 485
P+WNEQYTWEV+DPCTV+T+GVFDNCHL GG G DSRIGKVRIRLSTLE DR+YTH
Sbjct: 410 PRWNEQYTWEVFDPCTVVTVGVFDNCHLHGGEKIGGAKDSRIGKVRIRLSTLETDRVYTH 469
Query: 486 SYPLLVLNPSGVKKMGELQLAVRFTCLSLASMIYLYAHPLLPKMHYLHPFTVNQLDSLRY 545
SYPLLVL+P+GVKKMGE+ LAVRFTC SL +M+Y+Y+ PLLPKMHY+HP TV+QLD+LR+
Sbjct: 470 SYPLLVLHPNGVKKMGEIHLAVRFTCSSLLNMMYMYSQPLLPKMHYIHPLTVSQLDNLRH 529
Query: 546 QAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSLFSGAISMSKWLG 605
QA IV++RL RAEPPLRKEVVEYMLDV SHMWSMRRSKANFFRI+ + SG I++ KW
Sbjct: 530 QATQIVSMRLTRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFE 589
Query: 606 EVRYWKNPVTTILVHVLFLILICYPELILPTIFLYMFLIGIWNYRFRPRHPPHMDTKLSW 665
++ WKNP+TT+L+H+LF+IL+ YPELILPTIFLY+FLIGIW YR+RPRHPPHMDT+LS
Sbjct: 590 QICNWKNPITTVLIHLLFIILVLYPELILPTIFLYLFLIGIWYYRWRPRHPPHMDTRLSH 649
Query: 666 ADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMATQGERFQALLSWR 725
AD+ HPDELDEEFDTFPTS+ D+VRMRYDRLRS+AGRIQTVVGD+ATQGER Q+LLSWR
Sbjct: 650 ADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWR 709
Query: 726 DPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFRSKLPSIPSNFFRRLPSRA 785
DPRAT+LFV+FCLIAAV+LYVTPF+++ L G++ LRHPRFR KLPS+P NFFRRLP+R
Sbjct: 710 DPRATALFVLFCLIAAVILYVTPFQVVALCIGIYALRHPRFRYKLPSVPLNFFRRLPART 769
Query: 786 DTML 789
D ML
Sbjct: 770 DCML 773
|
|
| TAIR|locus:2182305 AT5G12970 "AT5G12970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2991 (1057.9 bits), Expect = 8.3e-312, P = 8.3e-312
Identities = 541/758 (71%), Positives = 663/758 (87%)
Query: 33 GAGGWISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRH 92
GAG ++ ++ STYDLVEQM YLYVRV KA++LP V+GSCDPYVEVKLGNY+G T+H
Sbjct: 20 GAGS-VTGDKLCSTYDLVEQMHYLYVRVVKAKELPGKDVTGSCDPYVEVKLGNYRGMTKH 78
Query: 93 FEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSP 152
FEK+SNPEWKQVFAFSKE+IQ+S+LEV V+D+++V DD IG+++FD+NE+P RVPPDSP
Sbjct: 79 FEKRSNPEWKQVFAFSKERIQASILEVVVKDKDVV-LDDLIGRIMFDLNEIPKRVPPDSP 137
Query: 153 LAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFPEAWHSDAATVEGEGVFNIRSKVYV 212
LAPQWYRLEDR RKVKGE+MLAVW+GTQADEAF +AWHSDAATV EGV +IRSKVY+
Sbjct: 138 LAPQWYRLEDRHG-RKVKGELMLAVWMGTQADEAFSDAWHSDAATVGPEGVTHIRSKVYL 196
Query: 213 SPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFV 272
SPKLWY+RVNVIEAQD+ P DK++ P+ +V+A +GNQ L+T++ T+T NP+WNEDL+FV
Sbjct: 197 SPKLWYVRVNVIEAQDLIPHDKTKFPEVYVKAMLGNQTLRTRISQTKTLNPMWNEDLMFV 256
Query: 273 AAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALE 332
AEPFEE L+L VE++V P KDE LGR + L ++RRLDHRP++S+WFNLEK +E
Sbjct: 257 VAEPFEEALILAVEDRVAPNKDETLGRCAIPLQNVQRRLDHRPLNSRWFNLEKHIM--VE 314
Query: 333 LDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQG 392
+++ E+KF+SRIHLR+ LEG YHV+DEST Y SD RPTA+QLWK IG+LEVGI+SA G
Sbjct: 315 GEQK-EIKFASRIHLRIFLEGGYHVLDESTHYSSDLRPTAKQLWKPSIGLLEVGIISAHG 373
Query: 393 LLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFD 452
L+PMK++DG+GTTDAYCVAKYG KW+RTRT+VD+F PKWNEQYTWEV+D CTVIT G FD
Sbjct: 374 LMPMKSKDGKGTTDAYCVAKYGQKWIRTRTIVDSFTPKWNEQYTWEVFDTCTVITFGAFD 433
Query: 453 NCHL-GGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTC 511
N H+ GGSG D RIGKVRIRLSTLEADRIYTHSYPLLV +PSG+KK GE+QLAVRFTC
Sbjct: 434 NGHIPGGSGK--DLRIGKVRIRLSTLEADRIYTHSYPLLVFHPSGIKKTGEIQLAVRFTC 491
Query: 512 LSLASMIYLYAHPLLPKMHYLHPFTVNQLDSLRYQAMNIVAVRLGRAEPPLRKEVVEYML 571
LSL +M+++Y+ PLLPKMHY+HP +V QLDSLR+QAMNIV+ RL RAEPPLRKE+VEYML
Sbjct: 492 LSLINMLHMYSQPLLPKMHYIHPLSVLQLDSLRHQAMNIVSARLNRAEPPLRKEIVEYML 551
Query: 572 DVDSHMWSMRRSKANFFRIVSLFSGAISMSKWLGEVRYWKNPVTTILVHVLFLILICYPE 631
DVDSHMWSMRRSKANFFRI+++ SG I++ KW ++ W+NP+TTIL+HVLF+IL+ YPE
Sbjct: 552 DVDSHMWSMRRSKANFFRIMNVLSGLIAVGKWFDQICNWRNPITTILIHVLFIILVLYPE 611
Query: 632 LILPTIFLYMFLIGIWNYRFRPRHPPHMDTKLSWADAVHPDELDEEFDTFPTSKQQDVVR 691
LILPT+FLY+FLIGIWN+R+RPRHPPHMDT+LS ADAVHPDELDEEFDTFPTS+ ++VR
Sbjct: 612 LILPTVFLYLFLIGIWNFRWRPRHPPHMDTRLSHADAVHPDELDEEFDTFPTSRSSEIVR 671
Query: 692 MRYDRLRSVAGRIQTVVGDMATQGERFQALLSWRDPRATSLFVIFCLIAAVVLYVTPFKI 751
MRYDRLRS+ GR+QTV+GD+ATQGERF +LLSWRDPRAT+LFV+FCLIAA+VLYVTPF++
Sbjct: 672 MRYDRLRSIGGRVQTVIGDLATQGERFLSLLSWRDPRATTLFVLFCLIAAIVLYVTPFQV 731
Query: 752 ITLVAGLFWLRHPRFRSKLPSIPSNFFRRLPSRADTML 789
+ L+AG++ LRHPRFR KLPS+P N FRRLP+R+D++L
Sbjct: 732 VALLAGIYVLRHPRFRHKLPSVPLNLFRRLPARSDSLL 769
|
|
| TAIR|locus:2017627 AT1G51570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2984 (1055.5 bits), Expect = 4.6e-311, P = 4.6e-311
Identities = 544/785 (69%), Positives = 666/785 (84%)
Query: 11 EDYKLKDTKPQLGERWPHGGIRGAGGWISSERATSTYDLVEQMFYLYVRVEKARDLPTNP 70
ED+ LK+TKP LG GG ++ ++ T+TYDLVEQM YLYVRV KA++LP
Sbjct: 7 EDFSLKETKPHLG-----------GGKVTGDKLTTTYDLVEQMQYLYVRVVKAKELPGKD 55
Query: 71 VSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRD 130
++GSCDPYVEVKLGNY+G TRHFEKKSNPEW QVFAFSK+++Q+S LE V+D+++V +D
Sbjct: 56 LTGSCDPYVEVKLGNYRGTTRHFEKKSNPEWNQVFAFSKDRVQASYLEATVKDKDLV-KD 114
Query: 131 DYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFPEA 190
D IG+VVFD+NE+P RVPPDSPLAPQWYRLED + +KVKGE+MLAVW GTQADEAFPEA
Sbjct: 115 DLIGRVVFDLNEIPKRVPPDSPLAPQWYRLEDGKG-QKVKGELMLAVWFGTQADEAFPEA 173
Query: 191 WHSDAATVEG-EGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQ 249
WHSDAATV G + + NIRSKVY+SPKLWYLRVNVIEAQD+ P DK + P+ FV+ +GNQ
Sbjct: 174 WHSDAATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPSDKGRYPEVFVKVIMGNQ 233
Query: 250 VLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIER 309
L+T++ +R+ NP+WNEDL+FV AEPFEE L+L+VE++V P KDE LGR + L +++
Sbjct: 234 ALRTRVSQSRSINPMWNEDLMFVVAEPFEEPLILSVEDRVAPNKDEVLGRCAVPLQYLDK 293
Query: 310 RLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQR 369
R D+RPV+S+WFNLEK +E ++ E+KF+S+IH+R+CLEG YHV+DEST Y SD R
Sbjct: 294 RFDYRPVNSRWFNLEKHVI--MEGGEKKEIKFASKIHMRICLEGGYHVLDESTHYSSDLR 351
Query: 370 PTARQLWKQPIGILEVGILSAQGLLPMKTRDG-RGTTDAYCVAKYGLKWVRTRTLVDNFN 428
PTA+QLWK IG+LE+G+L+A GL+PMK ++G RGTTDAYCVAKYG KW+RTRT++D+F
Sbjct: 352 PTAKQLWKPNIGVLELGVLNATGLMPMKAKEGGRGTTDAYCVAKYGQKWIRTRTIIDSFT 411
Query: 429 PKWNEQYTWEVYDPCTVITLGVFDNCHL-GG---SGTKPDSRIGKVRIRLSTLEADRIYT 484
P+WNEQYTWEV+DPCTV+T+GVFDNCHL GG +G DSRIGKVRIRLSTLEADR+YT
Sbjct: 412 PRWNEQYTWEVFDPCTVVTVGVFDNCHLHGGDKNNGGGKDSRIGKVRIRLSTLEADRVYT 471
Query: 485 HSYPLLVLNPSGVKKMGELQLAVRFTCLSLASMIYLYAHPLLPKMHYLHPFTVNQLDSLR 544
HSYPLLVL+PSGVKKMGE+ LAVRFTC SL +M+Y+Y+ PLLPKMHYLHP TV+QLD+LR
Sbjct: 472 HSYPLLVLHPSGVKKMGEIHLAVRFTCSSLLNMMYMYSMPLLPKMHYLHPLTVSQLDNLR 531
Query: 545 YQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSLFSGAISMSKWL 604
+QA IV+ RL RAEPPLRKEVVEYMLDV SHMWSMRRSKANFFRI+ + SG I++ KW
Sbjct: 532 HQATQIVSTRLTRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIAVGKWF 591
Query: 605 GEVRYWKNPVTTILVHVLFLILICYPELILPTIFLYMFLIGIWNYRFRPRHPPHMDTKLS 664
++ WKNP+TT+L+H+LF+IL+ YPELILPTIFLY+FLIG+W YR+RPRHPPHMDT+LS
Sbjct: 592 EQICVWKNPITTVLIHILFIILVIYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLS 651
Query: 665 WADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMATQGERFQALLSW 724
AD+ HPDELDEEFDTFPTS+ D+VRMRYDRLRS+AGRIQTVVGD+ATQGERFQ+LLSW
Sbjct: 652 HADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERFQSLLSW 711
Query: 725 RDPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFRSKLPSIPSNFFRRLPSR 784
RDPRAT+LFV+FCLIAAV+LY+TPF+++ GL+ LRHPR R KLPS+P NFFRRLP+R
Sbjct: 712 RDPRATALFVLFCLIAAVILYITPFQVVAFAIGLYVLRHPRLRYKLPSVPLNFFRRLPAR 771
Query: 785 ADTML 789
D ML
Sbjct: 772 TDCML 776
|
|
| TAIR|locus:2139727 AT4G11610 "AT4G11610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2822 (998.5 bits), Expect = 6.7e-294, P = 6.7e-294
Identities = 514/783 (65%), Positives = 651/783 (83%)
Query: 12 DYKLKDTKPQLGERWPHGGIRGAGGWI--SSERATSTYDLVEQMFYLYVRVEKARDLPTN 69
D+ LK+T P LG GG R GG + + ATSTYDLVE+M++LYVRV KAR+LP
Sbjct: 240 DFALKETSPHLG-----GG-RVVGGRVIHKDKTATSTYDLVERMYFLYVRVVKARELPIM 293
Query: 70 PVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGR 129
++GS DP+VEV++GNYKG TRHFEK+ +PEW QVFAF+KE++Q+SVLEV V+D++++ +
Sbjct: 294 DITGSVDPFVEVRVGNYKGITRHFEKRQHPEWNQVFAFAKERMQASVLEVVVKDKDLL-K 352
Query: 130 DDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFPE 189
DDY+G V FD+N+VP RVPPDSPLAPQWYRLED++ + K+KGE+MLAVWIGTQADEAF +
Sbjct: 353 DDYVGFVRFDINDVPLRVPPDSPLAPQWYRLEDKKGE-KIKGELMLAVWIGTQADEAFSD 411
Query: 190 AWHSDAAT-VEGEGVFN--IRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQV 246
AWHSDAA V+ + +RSKVY +P+LWY+RVNVIEAQD+ P DK++ P +V+AQ+
Sbjct: 412 AWHSDAAMPVDCSPAISAVLRSKVYHAPRLWYVRVNVIEAQDLIPTDKTRFPDVYVKAQL 471
Query: 247 GNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNV 306
GNQV+KT+ C RT +WNED +FV AEPFE+ LVLTVE++V P KDE +GR + LN
Sbjct: 472 GNQVMKTRPCQARTLGAVWNEDFLFVVAEPFEDHLVLTVEDRVAPGKDEIVGRTYIPLNT 531
Query: 307 IERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYIS 366
+E+R D +H++W+NLE+ +++D+ KFS RIHLRVCLEG YHV+DEST Y S
Sbjct: 532 VEKRADDHMIHARWYNLERPVI--VDVDQLKREKFSMRIHLRVCLEGGYHVLDESTHYSS 589
Query: 367 DQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDN 426
D RP+AR LW+QPIG+LE+GIL+A GL PMKTR+GRGT+D +CV KYG KWVRTRT+VDN
Sbjct: 590 DLRPSARPLWRQPIGVLELGILNAVGLHPMKTREGRGTSDTFCVGKYGQKWVRTRTMVDN 649
Query: 427 FNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHS 486
PK+NEQYTWEV+DP TV+T+GVFDN LG G + D +IGK+RIRLSTLE RIYTHS
Sbjct: 650 LCPKYNEQYTWEVFDPATVLTVGVFDNGQLGEKGNR-DVKIGKIRIRLSTLETGRIYTHS 708
Query: 487 YPLLVLNPSGVKKMGELQLAVRFTCLSLASMIYLYAHPLLPKMHYLHPFTVNQLDSLRYQ 546
YPLLVL+P+GVKKMGEL +AVRFTC+S A+M+Y Y+ PLLPKMHY+ PF+V Q D LR+Q
Sbjct: 709 YPLLVLHPTGVKKMGELHMAVRFTCISFANMLYQYSKPLLPKMHYVRPFSVMQQDMLRHQ 768
Query: 547 AMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSLFSGAISMSKWLGE 606
A+NIVA RLGRAEPPLRKE++E+M D DSH+WSMR+SKANFFR++++FSG I++ KW +
Sbjct: 769 AVNIVAARLGRAEPPLRKEIIEFMSDTDSHLWSMRKSKANFFRMMTVFSGVIAVGKWFSD 828
Query: 607 VRYWKNPVTTILVHVLFLILICYPELILPTIFLYMFLIGIWNYRFRPRHPPHMDTKLSWA 666
+ W+NP+TT+LVHVLFL+L+C PELILPT+FLYMFLIG+WNYRFRPR+PPHM+TK+S A
Sbjct: 829 ICSWRNPITTVLVHVLFLMLVCLPELILPTMFLYMFLIGLWNYRFRPRYPPHMNTKISQA 888
Query: 667 DAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMATQGERFQALLSWRD 726
+AVHPDELDEEFDTFPT++ D+VR+RYDRLRSVAGRIQTV+GD+ATQGERFQALLSWRD
Sbjct: 889 EAVHPDELDEEFDTFPTTRNPDMVRLRYDRLRSVAGRIQTVIGDLATQGERFQALLSWRD 948
Query: 727 PRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFRSKLPSIPSNFFRRLPSRAD 786
PRAT++FVI C IAA+V ++TP +I+ +AG F +RHPRFR +LPS+P NFFRRLP+R D
Sbjct: 949 PRATAIFVILCFIAAIVFFITPIQIVVALAGFFTMRHPRFRHRLPSVPVNFFRRLPARTD 1008
Query: 787 TML 789
+ML
Sbjct: 1009 SML 1011
|
|
| TAIR|locus:2009492 AT1G22610 "AT1G22610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2617 (926.3 bits), Expect = 3.5e-272, P = 3.5e-272
Identities = 479/788 (60%), Positives = 614/788 (77%)
Query: 4 LSAPYYQE-DYKLKDTKPQLGERWPHGGIRGAGGWISSERATSTYDLVEQMFYLYVRVEK 62
+ P Q +++L +T P L R + G ++ +STYDLVEQM YLYV V K
Sbjct: 247 MQPPRQQNPEFQLIETSPPLAARMRQSYYYRSSG----DKTSSTYDLVEQMHYLYVSVVK 302
Query: 63 ARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVR 122
ARDLP VSGS DPYVEVKLGNYKG T+H EK SNP WKQ+FAFSKE++QS++LEV V+
Sbjct: 303 ARDLPVMDVSGSLDPYVEVKLGNYKGLTKHLEKNSNPIWKQIFAFSKERLQSNLLEVTVK 362
Query: 123 DREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQ 182
D++++ +DD++G+V D+ EVP RVPPDSPLAPQWYRLED++ + +GE+MLAVW+GTQ
Sbjct: 363 DKDLLTKDDFVGRVHIDLTEVPLRVPPDSPLAPQWYRLEDKKGMKTNRGEIMLAVWMGTQ 422
Query: 183 ADEAFPEAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFV 242
ADE+FP+AWHSDA V + N RSKVY SPKL+YLR++V+EAQD+ P DK ++P A V
Sbjct: 423 ADESFPDAWHSDAHRVSHSNLSNTRSKVYFSPKLYYLRIHVMEAQDLVPSDKGRVPDAIV 482
Query: 243 EAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRLRL 302
+ Q GNQ+ T+ RT NP W+E+L+FV +EPFE+ ++++V++++ P KDE LGR+ +
Sbjct: 483 KIQAGNQMRATRTPQMRTMNPQWHEELMFVVSEPFEDMVIVSVDDRIGPGKDEILGRVFI 542
Query: 303 SLNVIERRLD-HRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDES 361
+ + R + + +WFNL++ E +++ + KFSS+I LRVC+E YHV+DES
Sbjct: 543 PVRDVPVRQEVGKMPDPRWFNLQRHSMSMEEENEKRKEKFSSKILLRVCIEAGYHVLDES 602
Query: 362 TMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTR 421
T + SD +P+++ L K IGILE+GILSA+ L+PMK +DGR TD YCVAKYG KWVRTR
Sbjct: 603 THFSSDLQPSSKHLRKPSIGILELGILSARNLMPMKGKDGR-MTDPYCVAKYGNKWVRTR 661
Query: 422 TLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADR 481
TL+D PKWNEQYTWEV+DPCTVIT+GVFDN H+ G D RIGKVR+RLSTLE DR
Sbjct: 662 TLLDALAPKWNEQYTWEVHDPCTVITIGVFDNSHVNDGGDFKDQRIGKVRVRLSTLETDR 721
Query: 482 IYTHSYPLLVLNPSGVKKMGELQLAVRFTCLSLASMIYLYAHPLLPKMHYLHPFTVNQLD 541
+YTH YPLLVL P G+KK GELQLA+R+TC +M+ Y PLLPKMHY+ P V +D
Sbjct: 722 VYTHFYPLLVLTPGGLKKNGELQLALRYTCTGFVNMMAQYGRPLLPKMHYIQPIPVRHID 781
Query: 542 SLRYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSLFSGAISMS 601
LR+QAM IVA RL R+EPPLR+EVVEYMLDVD HM+S+RRSKANF RI+SL S +
Sbjct: 782 LLRHQAMQIVATRLSRSEPPLRREVVEYMLDVDYHMFSLRRSKANFSRIMSLLSSVTLVC 841
Query: 602 KWLGEVRYWKNPVTTILVHVLFLILICYPELILPTIFLYMFLIGIWNYRFRPRHPPHMDT 661
KW ++ W+NP+TT LVHVLFLIL+CYPELILPT+FLY+F+IG+WNYR+RPRHPPHMD
Sbjct: 842 KWFNDICTWRNPITTCLVHVLFLILVCYPELILPTVFLYLFVIGMWNYRYRPRHPPHMDA 901
Query: 662 KLSWADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMATQGERFQAL 721
++S AD HPDELDEEFDTFPTS+ D+VRMRYDRLRSV GR+QTVVGD+ATQGER QAL
Sbjct: 902 RVSQADNAHPDELDEEFDTFPTSRPADIVRMRYDRLRSVGGRVQTVVGDLATQGERIQAL 961
Query: 722 LSWRDPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFRSKLPSIPSNFFRRL 781
LSWRDPRAT+LF++F LI AV +YVTPF++I ++ GLF LRHPRFRS++PS+P+NFF+RL
Sbjct: 962 LSWRDPRATALFIVFALIWAVFIYVTPFQVIAIIIGLFMLRHPRFRSRMPSVPANFFKRL 1021
Query: 782 PSRADTML 789
P+++D +L
Sbjct: 1022 PAKSDMLL 1029
|
|
| TAIR|locus:2127103 AT4G00700 "AT4G00700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2445 (865.7 bits), Expect = 6.0e-254, P = 6.0e-254
Identities = 456/787 (57%), Positives = 606/787 (77%)
Query: 12 DYKLKDTKPQLGERWPHGGIRGAGGWI--SSERATS-TYDLVEQMFYLYVRVEKARDLPT 68
D+ +K+T P LG GG R GG + +ER TS TYDLVE+M +LYVRV KARDLP
Sbjct: 229 DFSVKETSPLLG-----GG-RIVGGRVVRGTERPTSGTYDLVEEMKFLYVRVVKARDLPN 282
Query: 69 NPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVG 128
++GS DPYV VK+GN+KG T HF K ++PEW QVFAF+K+ +QS+ LEV V+D++I+
Sbjct: 283 KDLTGSLDPYVVVKIGNFKGVTTHFNKNTDPEWNQVFAFAKDNLQSNFLEVMVKDKDIL- 341
Query: 129 RDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFP 188
DD++G V FD+ EV +RVPPDSPLAPQWYRLE++R ++K E+MLAVW GTQADEAF
Sbjct: 342 LDDFVGIVKFDLREVQSRVPPDSPLAPQWYRLENKRGEKK-NYEIMLAVWSGTQADEAFG 400
Query: 189 EAWHSDAAT-VEGEGVF--NIRSKVYVSPKLWYLRVNVIEAQDVEPL-DKSQLPQAFVEA 244
+A SD+ + + N+RSKVY SP+LWYLRV ++EAQDV + DKS++P+ FV
Sbjct: 401 DATFSDSLVDSDSSNIISANLRSKVYHSPRLWYLRVQILEAQDVIIVSDKSRVPEVFVRV 460
Query: 245 QVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSL 304
+VGNQ+L+TK P R+ NP W ++ FV AEPFE+ LVL+VE+ P +DEP+G+ + +
Sbjct: 461 KVGNQMLRTKF-PQRSNNPKWGDEFTFVVAEPFEDNLVLSVEDHTAPNRDEPVGKAVILM 519
Query: 305 NVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMY 364
N IE+R+D +P H +W +LE A+++DK ++KF++R+ + L+G YHV DES
Sbjct: 520 NDIEKRIDDKPFHDRWVHLEDSISDAMDVDKAKKVKFATRLRYKAVLDGGYHVFDESMYN 579
Query: 365 ISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLV 424
SD RP++R+LWK IG+LE+GIL+A MKTR+G+GT+D Y VAKYG KWVR+RT++
Sbjct: 580 SSDLRPSSRKLWKPAIGVLELGILNANVFHSMKTREGKGTSDTYVVAKYGHKWVRSRTVI 639
Query: 425 DNFNPKWNEQYTWEVYDPCTVITLGVFDNCHL--GGSGTKPDSRIGKVRIRLSTLEADRI 482
++ NPK+NEQYTWEV+DP TV+T+ VFDN H G G K D IGKVRIRLSTL+ R+
Sbjct: 640 NSMNPKYNEQYTWEVFDPATVLTICVFDNAHFAAGDGGNKRDQPIGKVRIRLSTLQTGRV 699
Query: 483 YTHSYPLLVLNPSGVKKMGELQLAVRFTCLSLASMIYLYAHPLLPKMHYLHPFTVNQLDS 542
YTH+YPLLVL P+G+KK GEL LAVRFTC S++SM+ Y PLLPKMHY+ P + NQ ++
Sbjct: 700 YTHAYPLLVLQPTGLKKRGELHLAVRFTCTSVSSMLMKYTKPLLPKMHYILPLSTNQQEA 759
Query: 543 LRYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSLFSGAISMSK 602
L+ QA+NI+ VRLGR+EPPLR+EVV+Y+ D S ++SMRRSKANF R ++FSGA+S+ K
Sbjct: 760 LKMQAINIIIVRLGRSEPPLRREVVDYLTDWKSQLFSMRRSKANFNRFTTVFSGALSVWK 819
Query: 603 WLGEVRYWKNPVTTILVHVLFLILICYPELILPTIFLYMFLIGIWNYRFRPRHPPHMDTK 662
W+ +V WK PVTT LVHVL+ +L+ +PE+ILPT+FLYM +IG+WNYRF+PR PPHMD K
Sbjct: 820 WMEQVCTWKTPVTTALVHVLYTMLVTFPEMILPTVFLYMAVIGMWNYRFKPRFPPHMDAK 879
Query: 663 LSWADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMATQGERFQALL 722
LS+AD V+ DELDEEFDTFPT + D+V+MRYDRLRSVAG++Q+V GD+A QGER QALL
Sbjct: 880 LSYADNVNSDELDEEFDTFPTVRAPDIVKMRYDRLRSVAGKVQSVAGDIAAQGERVQALL 939
Query: 723 SWRDPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFRSKLPSIPSNFFRRLP 782
SWRDPRAT++FV FC I A+ LY+TPFK++ L++G +++RHP+ R ++PS P NFFRRLP
Sbjct: 940 SWRDPRATAIFVTFCFIIAMALYITPFKLVALLSGYYFMRHPKLRHRIPSAPVNFFRRLP 999
Query: 783 SRADTML 789
+ D+ML
Sbjct: 1000 AMTDSML 1006
|
|
| TAIR|locus:2020280 AT1G04150 "AT1G04150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2334 (826.7 bits), Expect = 3.5e-242, P = 3.5e-242
Identities = 453/795 (56%), Positives = 590/795 (74%)
Query: 12 DYKLKDTKPQLGERWPHGGIRGAGGWIS-SERATSTYDLVEQMFYLYVRVEKARDLPTNP 70
++ LK+TKP LG G G GG S ++ +STYDLVEQM YLYV + KA+DL
Sbjct: 241 EFSLKETKPCLG-----GTSNGLGGLSSHKDKTSSTYDLVEQMQYLYVNIVKAKDLS--- 292
Query: 71 VSGSCDPYVEVKLGNYKGKTRHFEKKS-NPEWKQVFAFSKEKIQSSVLEVFVRDREIVGR 129
V G + EVKLGNY+G T+ S NPEW QVF FSKE+IQSSV+E+FV++ +
Sbjct: 293 VLG--EVVSEVKLGNYRGVTKKVSSNSSNPEWNQVFVFSKERIQSSVVELFVKEGN---K 347
Query: 130 DDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFPE 189
D+Y G+V+FD++E+PTRVPPDSPLAPQWY++E+R R GE+M++VW GTQADEAF E
Sbjct: 348 DEYTGRVLFDLSEIPTRVPPDSPLAPQWYKIENRNGGRG-NGELMVSVWFGTQADEAFAE 406
Query: 190 AWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKS----QLPQAFVEAQ 245
AWHS A V E + +I+SKVY+SPKLWYLR++VIEAQDV +DK + P+ + Q
Sbjct: 407 AWHSKAGNVHIEELSSIKSKVYLSPKLWYLRISVIEAQDVAIMDKGSSLMRFPELSAKLQ 466
Query: 246 VGNQVLKTKLC---PTRT-TNPLWNEDLIFVAAEPFEEQLVLTVENKVTPA-----KDEP 296
VG+Q+L+T + PT++ +NP WNEDL+FV AEPFE+ + + VE+++ D
Sbjct: 467 VGSQILRTAIASAIPTKSFSNPYWNEDLMFVVAEPFEDCVTVVVEDRLNGGAIGGQNDVA 526
Query: 297 LGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYH 356
+GR+++ ++ +ERR V S+WF+L+ G + +F SRIHLR+ L+G YH
Sbjct: 527 VGRVQIPISAVERRTGDTLVGSRWFSLDN-G--------NNNNRFGSRIHLRLSLDGGYH 577
Query: 357 VMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGR--GTTDAYCVAKYG 414
V+DE+TMY SD RPTA++LWK +G+LE+GILSA GL+PMK RDG+ G D+YCVAKYG
Sbjct: 578 VLDEATMYNSDVRPTAKELWKPQVGLLEIGILSATGLMPMKVRDGKCGGIADSYCVAKYG 637
Query: 415 LKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRL 474
KWVRTRT+VD+ PKWNEQYTWEVYDPCTV+T+GVFDN + + D RIGKVRIRL
Sbjct: 638 PKWVRTRTVVDSLCPKWNEQYTWEVYDPCTVVTVGVFDNARVNENNNSRDVRIGKVRIRL 697
Query: 475 STLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTCLSLASMIYLYAHPLLPKMHYLHP 534
STLE R+YTHSYPL+VL+PSGVKK GEL LAVR +C + +M+++YA PLLPKMHY P
Sbjct: 698 STLETGRVYTHSYPLIVLHPSGVKKTGELHLAVRLSCGNAVNMLHMYALPLLPKMHYTQP 757
Query: 535 FTVNQLDSLRYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIVSLF 594
V+ L+ LRYQ +N VA RL RAEPPL +EVVEYMLD D H+WSMRRSKANFFR+V++
Sbjct: 758 LGVHMLERLRYQTLNAVAARLSRAEPPLGREVVEYMLDHDFHVWSMRRSKANFFRLVNVI 817
Query: 595 SGAISMSKWLGEVRYWKNPVTTILVHVLFLILICYPELILPTIFLYMFLIGIWNYRFRPR 654
SG ++++K + +R W PV + + + FL ++ +PEL+LP + LY +G+W +R R R
Sbjct: 818 SGLVAVAKLVEVMRSWSKPVYSTVFVLAFLFMVLFPELLLPCLLLYTAAVGVWRFRRRSR 877
Query: 655 HPPHMDTKLSWADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMATQ 714
+PPHMD ++S A+ V PDELDEEFDTFPTS+ DVVRMRYDR+RS+AGR+QTVVGDMA+Q
Sbjct: 878 YPPHMDARISHAETVFPDELDEEFDTFPTSRGFDVVRMRYDRVRSIAGRVQTVVGDMASQ 937
Query: 715 GERFQALLSWRDPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFRSKLPSIP 774
GER QALLSWRDPRAT LF++FCL+AAV Y P K+ ++GL++LR PRFR KLPS
Sbjct: 938 GERVQALLSWRDPRATFLFLMFCLLAAVGFYTVPVKLTVAISGLYYLRPPRFRRKLPSRG 997
Query: 775 SNFFRRLPSRADTML 789
+FFRRLPSRAD++L
Sbjct: 998 LSFFRRLPSRADSLL 1012
|
|
| TAIR|locus:2119742 AT4G20080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2282 (808.4 bits), Expect = 1.1e-236, P = 1.1e-236
Identities = 429/764 (56%), Positives = 568/764 (74%)
Query: 33 GAGGWISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRH 92
G GG E+ TS++DLVE M +LY R+ +AR LP N D +V VK+G+YKG+T+
Sbjct: 25 GNGGVNGGEKLTSSFDLVEAMHFLYARIVRARALPVN------DSFVAVKIGSYKGRTKQ 78
Query: 93 F-EKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDS 151
NPE+ + FAF+K ++Q +LEV VR+R+ DD +GK FD+ E+PTRVPPDS
Sbjct: 79 ILNSNPNPEFHETFAFTKTRLQGDILEVVVRNRDNPNEDDIVGKCKFDVAEIPTRVPPDS 138
Query: 152 PLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFPEAWHSDAATVEGEGVFNIRSKVY 211
PLAPQWYRLEDR + K+ GE+M++VWIGTQADE F EAWHSD+A+V GE V N RSKVY
Sbjct: 139 PLAPQWYRLEDR-NGVKIGGEIMVSVWIGTQADEVFSEAWHSDSASVTGENVVNTRSKVY 197
Query: 212 VSPKLWYLRVNVIEAQDVEPLDKSQL-PQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLI 270
+SP+LWYLRVNVIEAQD+ L +++ P+ ++ +GN V+++++ T++ +P+WNED++
Sbjct: 198 LSPRLWYLRVNVIEAQDLVLLHPNRINPEILIKGFLGNVVVRSRISQTKSVSPVWNEDMM 257
Query: 271 FVAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGA 330
FVA EPF++ L+L+VE+KV P ++E LGR + L+ +ERR+ PV S W+N+E G
Sbjct: 258 FVAVEPFDDSLILSVEDKVGP-REECLGRCEIKLSQVERRVLPGPVPSLWYNVEHIG--- 313
Query: 331 LELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSA 390
E + +F+ RIHLRV L+G YHV+DES Y SD R +A+ LW PIG+LE+G+L+A
Sbjct: 314 -ETGEGR--RFAGRIHLRVSLDGGYHVLDESIQYSSDYRASAKLLWTPPIGVLELGVLNA 370
Query: 391 QGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGV 450
GL+PMK+R GRGTTDAYCVAKYG KWVRTRT+VD F+PKWNEQYTWEVYDP TVIT+GV
Sbjct: 371 TGLMPMKSRGGRGTTDAYCVAKYGTKWVRTRTIVDTFDPKWNEQYTWEVYDPYTVITIGV 430
Query: 451 FDNCHLGGSGTKP----DSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLA 506
FDN L G+G + DSRIGK+RIRLSTL +IYTHSYPL+VL P GVKKMGE+QLA
Sbjct: 431 FDNLKLFGAGNENRLINDSRIGKIRIRLSTLVTSKIYTHSYPLMVLKPDGVKKMGEIQLA 490
Query: 507 VRFTCLSLASMIYLYAHPLLPKMHYLHPFTVNQLDSLRYQAMNIVAVRLGRAEPPLRKEV 566
VRFT S+ M+ Y PLLP+MHY+ P ++ QLDSLR+QA +I+ + LGR EP L ++V
Sbjct: 491 VRFTATSMMDMLQKYTEPLLPEMHYISPLSIYQLDSLRHQATHILCINLGRNEPALGRDV 550
Query: 567 VEYMLDVDSHMWSMRRSKANFFRIVSLFSGAISMSKWLGEVRYWKNPVTTILVHVLFLIL 626
VEYMLDV S++WS+RR +ANF R+VS F G I KW E+ WK+PVT++LVH++ L +
Sbjct: 551 VEYMLDVGSNIWSLRRGRANFERLVSFFDGWIDAWKWFDEICKWKSPVTSVLVHIVCLFV 610
Query: 627 ICYPELILPTIFLYMFLIGIWNYRFRPRHPPHMDTKLSWADAVHPDELDEEFDTFPTSKQ 686
+ P+ + ++ LY F+ G++ + RPRHPPHMD KLS AD+ PDELDEEFD FP+SK
Sbjct: 611 VFLPKYCVFSMLLYCFVFGLYRFGLRPRHPPHMDIKLSKADSALPDELDEEFDVFPSSKS 670
Query: 687 QDVVRMRYDRLRSVAGRIQTVVGDMATQGERFQALLSWRDPRATSLFVIFCLIAAVVLYV 746
DV++ RYDRLR +AGR+ V+GD+ATQGER ++LLSWRDPRATSLF+ FC ++ V+
Sbjct: 671 GDVLKRRYDRLRGIAGRMMIVLGDLATQGERVKSLLSWRDPRATSLFLTFCFVSCGVICF 730
Query: 747 TPFKIITLVAGLFWLRHPRFRS-KLPSIPSNFFRRLPSRADTML 789
K++ + +RHPR R +PSIP NFFRRLPSRAD++L
Sbjct: 731 VSMKLLLTFLAFYVMRHPRVRVFDIPSIPQNFFRRLPSRADSIL 774
|
|
| TAIR|locus:2098846 AT3G61300 "AT3G61300" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2267 (803.1 bits), Expect = 4.4e-235, P = 4.4e-235
Identities = 424/758 (55%), Positives = 575/758 (75%)
Query: 41 ERATST-YDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNP 99
+RA S+ +DLVE M +L++++ KAR+LP+ ++GS DPY+EVKLGNY GKT+HFEK NP
Sbjct: 235 KRARSSDHDLVEPMEFLFIKIVKARNLPSMDLTGSLDPYIEVKLGNYTGKTKHFEKNQNP 294
Query: 100 EWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYR 159
W +VFAFSK QS+VLEV V D+++V +DD++G + FD+N++PTRV PDSPLAP+WYR
Sbjct: 295 VWNEVFAFSKSNQQSNVLEVIVMDKDMV-KDDFVGLIRFDLNQIPTRVAPDSPLAPEWYR 353
Query: 160 LEDRRDDRKVKGEVMLAVWIGTQADEAFPEAWHSDAATVEGEGVFNIRSKVYVSPKLWYL 219
+ + + GE+MLAVW GTQADEAF +A +SDA + ++RSKVY SP+LWYL
Sbjct: 354 VNNEKG-----GEIMLAVWFGTQADEAFSDATYSDALNAVNKS--SLRSKVYHSPRLWYL 406
Query: 220 RVNVIEAQDVEPL-DKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFE 278
RVNVIEAQD+ + D+++LP +V+ ++ NQV++TK P+ + NP WNE+ VAAEPFE
Sbjct: 407 RVNVIEAQDLVIVPDRTRLPNPYVKIRLNNQVVRTK--PSHSLNPRWNEEFTLVAAEPFE 464
Query: 279 EQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLD-HRPVHSKWFNLEKFGFGALELDKRH 337
+ L++++E++V P ++E LG + + + I++R+D +R V ++WF+L+ + +
Sbjct: 465 D-LIISIEDRVAPNREETLGEVHIPIGTIDKRIDDNRTVPNRWFSLKT--------ENQR 515
Query: 338 ELKFSS-RIHLRVCLEGAYHVMDESTMYISDQRPTARQLW--KQP-IGILEVGILSAQGL 393
++F++ R+HL VCLEG YHV+DEST Y SD RP+ ++L KQP G+LE+GIL +GL
Sbjct: 516 RVRFATTRLHLNVCLEGGYHVLDESTYYSSDFRPSMKELLSHKQPSFGVLELGILRIEGL 575
Query: 394 LPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDN 453
+ + T DAYCVAKYG KWVRTRT+ + NP++NEQYTWEVY+P TVIT+GVFDN
Sbjct: 576 -NLSQEGKKETVDAYCVAKYGTKWVRTRTVTNCLNPRFNEQYTWEVYEPATVITIGVFDN 634
Query: 454 CHLG-GSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTCL 512
+ G+G K D +IGK+R+R+STLEA RIY+HSYPLLVL PSG+KKMGEL LA+RF+C
Sbjct: 635 NQINSGNGNKGDGKIGKIRVRISTLEAGRIYSHSYPLLVLRPSGLKKMGELHLAIRFSCS 694
Query: 513 SLASMIYLYAHPLLPKMHYLHPFTVNQLDSLRYQAMNIVAVRLGRAEPPLRKEVVEYMLD 572
S+ M+ Y PLLPKMHY P V Q + LR A+N+VA RL RAEPPLRKEVVEY+ D
Sbjct: 695 SMFQMLMQYWKPLLPKMHYARPLKVVQQEILRQHAVNLVAARLSRAEPPLRKEVVEYISD 754
Query: 573 VDSHMWSMRRSKANFFRIVSLFSGAISMSKWLGEVRYWKNPVTTILVHVLFLILICYPEL 632
+SH+WSMR+S+AN FR+ S+FSG + +W ++ WK PV T +H++FL+L+C PE+
Sbjct: 755 SNSHLWSMRKSRANLFRLSSVFSGLLGTGEWFQDICRWKKPVETTAIHIIFLVLVCSPEM 814
Query: 633 ILPTIFLYMFLIGIWNYRFRPRHPPHMDTKLSWADAVHPDELDEEFDTFPTSKQQD-VVR 691
ILP + L +F++G+WNYR RPR PPHMDT+LS+AD +HP+EL+EEFDTFP S Q +V+
Sbjct: 815 ILPVMSLCLFMLGVWNYRLRPRQPPHMDTRLSFADNIHPEELNEEFDTFPFSSQDPGIVK 874
Query: 692 MRYDRLRSVAGRIQTVVGDMATQGERFQALLSWRDPRATSLFVIFCLIAAVVLYVTPFKI 751
MRY+RLRS+A R QTVVGD+A QGER QALLSWRDPRATS+F++ CL++ VVLYV PFK+
Sbjct: 875 MRYERLRSIASRAQTVVGDIAGQGERVQALLSWRDPRATSIFMVLCLVSTVVLYVVPFKV 934
Query: 752 ITLVAGLFWLRHPRFRSKLPSIPSNFFRRLPSRADTML 789
L+AGL+ +R PRFR K P P NFFRRLP++ D ML
Sbjct: 935 FVLLAGLYIMRPPRFRGKTPPGPINFFRRLPAKTDCML 972
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 789 | |||
| pfam08372 | 156 | pfam08372, PRT_C, Plant phosphoribosyltransferase | 1e-110 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 3e-75 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 1e-67 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 3e-62 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 4e-21 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 1e-19 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 3e-19 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 4e-18 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 2e-16 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 2e-16 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 1e-14 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 6e-14 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 8e-14 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 1e-13 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 2e-13 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 5e-13 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 8e-13 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 2e-12 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 2e-12 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 8e-12 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 2e-11 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 2e-11 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 4e-11 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 5e-11 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 4e-10 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 7e-10 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 1e-09 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 3e-09 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 7e-09 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 7e-09 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 1e-08 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 1e-08 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 1e-08 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 1e-08 | |
| cd08388 | 128 | cd08388, C2A_Synaptotagmin-4-11, C2A domain first | 2e-08 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 3e-08 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 3e-08 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 3e-08 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 3e-08 | |
| cd08404 | 136 | cd08404, C2B_Synaptotagmin-4, C2 domain second rep | 5e-08 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 5e-08 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 8e-08 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 1e-07 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 2e-07 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 2e-07 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 2e-07 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 2e-07 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 2e-07 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 3e-07 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 3e-07 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 4e-07 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 4e-07 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 6e-07 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 7e-07 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 7e-07 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 7e-07 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 8e-07 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 1e-06 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 1e-06 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 2e-06 | |
| cd08390 | 123 | cd08390, C2A_Synaptotagmin-15-17, C2A domain first | 3e-06 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 3e-06 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 4e-06 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 6e-06 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 6e-06 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 6e-06 | |
| cd04020 | 162 | cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat | 6e-06 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 8e-06 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 8e-06 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 1e-05 | |
| cd04010 | 148 | cd04010, C2B_RasA3, C2 domain second repeat presen | 1e-05 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 2e-05 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 2e-05 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 2e-05 | |
| cd08383 | 117 | cd08383, C2A_RasGAP, C2 domain (first repeat) of R | 2e-05 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 5e-05 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 5e-05 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 6e-05 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 8e-05 | |
| cd08521 | 123 | cd08521, C2A_SLP, C2 domain first repeat present i | 8e-05 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 9e-05 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 1e-04 | |
| cd04032 | 127 | cd04032, C2_Perforin, C2 domain of Perforin | 1e-04 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 2e-04 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 2e-04 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 3e-04 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 4e-04 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 6e-04 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 8e-04 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 9e-04 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 0.001 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 0.001 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 0.001 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 0.002 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 0.002 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 0.002 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 0.003 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 0.003 | |
| cd08400 | 126 | cd08400, C2_Ras_p21A1, C2 domain present in RAS p2 | 0.003 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 0.004 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 0.004 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 0.004 |
| >gnl|CDD|192017 pfam08372, PRT_C, Plant phosphoribosyltransferase C-terminal | Back alignment and domain information |
|---|
Score = 333 bits (855), Expect = e-110
Identities = 126/156 (80%), Positives = 146/156 (93%)
Query: 634 LPTIFLYMFLIGIWNYRFRPRHPPHMDTKLSWADAVHPDELDEEFDTFPTSKQQDVVRMR 693
LPTIFLY+F+IG+WNYRFRPRHPPHMDT+LS ADA HPDELDEEFDTFPTS+ DVVRMR
Sbjct: 1 LPTIFLYLFVIGLWNYRFRPRHPPHMDTRLSHADAAHPDELDEEFDTFPTSRPPDVVRMR 60
Query: 694 YDRLRSVAGRIQTVVGDMATQGERFQALLSWRDPRATSLFVIFCLIAAVVLYVTPFKIIT 753
YDRLRSVAGR+QTVVGD+ATQGER QALLSWRDPRAT++FV+FCL+AAVVLYV PFK++
Sbjct: 61 YDRLRSVAGRVQTVVGDIATQGERLQALLSWRDPRATAIFVLFCLVAAVVLYVVPFKVVA 120
Query: 754 LVAGLFWLRHPRFRSKLPSIPSNFFRRLPSRADTML 789
L+AG ++LRHPRFRS++PS+P NFFRRLPSR D+ML
Sbjct: 121 LLAGFYYLRHPRFRSRMPSVPLNFFRRLPSRTDSML 156
|
This domain is found at the C-terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (pfam00168). Length = 156 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 240 bits (614), Expect = 3e-75
Identities = 94/153 (61%), Positives = 120/153 (78%), Gaps = 3/153 (1%)
Query: 218 YLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPF 277
YLRV VIEAQD+ P DK+++P+ FV+AQ+GNQVL+T+ TR NP WNE+L+FVAAEPF
Sbjct: 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF 60
Query: 278 EEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRH 337
E+ L+L+VE++V P KDEPLGR + LN IERR+D RPV S+WF+LE+ G + KR
Sbjct: 61 EDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKR- 119
Query: 338 ELKFSSRIHLRVCLEGAYHVMDESTMYISDQRP 370
KF+SRIHLR+CL+G YHV+DEST Y SD RP
Sbjct: 120 --KFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 218 bits (558), Expect = 1e-67
Identities = 91/126 (72%), Positives = 103/126 (81%), Gaps = 1/126 (0%)
Query: 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYD 441
ILEVGIL AQGL ++ +DGRG+TDAYCVAKYG KWVRTRT+ D+ NP+WNEQYTW VYD
Sbjct: 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYD 60
Query: 442 PCTVITLGVFDNCH-LGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKM 500
PCTV+T+GVFDN +PD IGKVRIRLSTLE DR+Y HSYPLL LNPSGVKKM
Sbjct: 61 PCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKM 120
Query: 501 GELQLA 506
GEL+ A
Sbjct: 121 GELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 204 bits (520), Expect = 3e-62
Identities = 84/127 (66%), Positives = 98/127 (77%), Gaps = 6/127 (4%)
Query: 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQS 114
YLYVRV KAR LP N S DP VEVKLGNYKG T+ E+ SNPEW QVFAFSK+++Q
Sbjct: 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQG 56
Query: 115 SVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVM 174
S LEV V D++ DD++G V FD++EVPTRVPPDSPLAPQWYRLED++ R V GE+M
Sbjct: 57 STLEVSVWDKDKAK-DDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGR-VGGELM 114
Query: 175 LAVWIGT 181
LAVW GT
Sbjct: 115 LAVWFGT 121
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 4e-21
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQS 114
L V V +AR+LP ++G DPYV+V LG K KT+ + NP W + F F +S
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60
Query: 115 SVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160
L V V D++ +DD++G+V ++E + W L
Sbjct: 61 DTLTVEVWDKDRFSKDDFLGEVEIPLSE----LLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 1e-19
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY---KGKTRHFEKKSNPEWKQVFAFSKEK 111
L V++ AR+LP G DPYV+V L K KT+ + NP W + F F
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPD 150
+ + LE+ V D++ GRDD+IG+V ++++ +
Sbjct: 61 PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHE 99
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 3e-19
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKG---KTRHFEKKSNPEWKQVFAFSKEKI 112
L V V A++LP ++G DPYV+V LG K KT+ + NP W + F F
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 113 QSSVLEVFVRDREIVGRDDYIGKVV 137
+ + L + V D + G+DD+IG+V
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 4e-18
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQS 114
+L V+V +A L + G DP+ ++L N + +T K NPEW ++F F + I
Sbjct: 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIH- 60
Query: 115 SVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVM 174
VLEV V D + + +++GKV + + +WY L+D++ + KG ++
Sbjct: 61 DVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE-------RKWYALKDKKLRTRAKGSIL 113
Query: 175 L 175
L
Sbjct: 114 L 114
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 2e-16
Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG---LKWVRTRTLVDNFNPKWNEQYTWEV 439
L V ++SA+ L P D G +D Y G +T+ + + NP WNE +T+EV
Sbjct: 1 LRVTVISAKNLPPK---DLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEV 57
Query: 440 YDP-CTVITLGVFDNCHLGGSGTKPDSRIGKVR 471
P + + V+D G D IG+V
Sbjct: 58 TLPELAELRIEVYDYDRFG-----KDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-16
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQ---VLKTKLCPTRTTNPLWNEDLIFVAAE 275
LRV VI A+++ P D + +V+ +G Q KTK+ T NP+WNE F
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVK-NTLNPVWNETFTFEVTL 59
Query: 276 PFEEQLVLTVENKVTPAKDEPLGRLR 301
P +L + V + KD+ +G +
Sbjct: 60 PELAELRIEVYDYDRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 1e-14
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG-LKWVRTRTLVDNFNPKWNEQYTWEVYD 441
L V ++ A+ L D G +D Y G + +T+ + + NP WNE + + V D
Sbjct: 1 LRVTVIEARNLPAK---DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLD 57
Query: 442 P-CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRI-YTHSYPL 489
P +T+ V+D D +G+V I LS L PL
Sbjct: 58 PESDTLTVEVWDKDRFS-----KDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 6e-14
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGN-QVLKTKLCPTRTTNPLWNEDLIFVAAEPF 277
LRV VIEA+++ D + +V+ +G Q KTK+ T NP+WNE F +P
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVK-NTLNPVWNETFEFPVLDPE 59
Query: 278 EEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNL 323
+ L + V +K +KD+ LG + + L+ + LD W L
Sbjct: 60 SDTLTVEVWDKDRFSKDDFLGEVEIPLSEL---LDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 8e-14
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG---LKWVRTRTLVDNFNPKWNEQYTWE 438
L V I+SA+ L P D G +D Y + +T+ + + NP WNE + +E
Sbjct: 1 TLTVKIISARNLPPK---DKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFE 57
Query: 439 VYDPCT-VITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTL 477
V P + + V+D G D IG+V I LS L
Sbjct: 58 VPPPELAELEIEVYDKDRFGR-----DDFIGQVTIPLSDL 92
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-13
Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 56 LYVRVEKARDLPT-NPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQ---VFAFSKEK 111
L VRV ARDLP + S D +VEVK G+ KT +K NP W F E+
Sbjct: 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE 60
Query: 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMN 141
+Q L++ V D + +D IGKV D+N
Sbjct: 61 LQDEPLQIRVMDHDTYSANDAIGKVYIDLN 90
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 2e-13
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 62 KARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFV 121
+ ++LP +G DPYV+ +LGN K K++ K NP+W + F QS +LE+ V
Sbjct: 8 EGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEV 67
Query: 122 RDREIVGRDDYIGKVVFDMNEVP 144
D++ +D++IG+ D++ +P
Sbjct: 68 WDKDTGKKDEFIGRCEIDLSALP 90
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 5e-13
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 218 YLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQ---VLKTKLCPTRTTNPLWNEDLIFVAA 274
L V +I A+++ P DK +V+ + KTK+ T NP+WNE F
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVK-NTLNPVWNETFEFEVP 59
Query: 275 EPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRP 315
P +L + V +K +D+ +G++ + L+ + H
Sbjct: 60 PPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEK 100
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 8e-13
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL---GN--YKGKTRHFEKKSNPEWKQVFAF--S 108
L V V KAR+LP + G DPYV+V L G K KT + NP + + F+F
Sbjct: 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVF 138
E+++ L + V D++ VGR++ IG+VV
Sbjct: 76 AEQLEEVSLVITVVDKDSVGRNEVIGQVVL 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-12
Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 18/116 (15%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL-----GNYKGKTRHFEKKSNPEWKQVFAFS-- 108
L V V +ARDLP +PYV+V L K +T+ +K NPEW Q F +S
Sbjct: 18 LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNV 77
Query: 109 -KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPL--APQWYRLE 161
+E ++ LEV V D + G +D++G+VV D+ D+ L P WY L+
Sbjct: 78 RRETLKERTLEVTVWDYDRDGENDFLGEVVIDLA--------DALLDDEPHWYPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-12
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSS 115
L V +ARDL +G+ DP+V V +T +K P W +VF F + S
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADS 61
Query: 116 VLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE-DRRDDRKVKG 171
L V V D ++V ++D++GKVVF + + + W+RL D R + + G
Sbjct: 62 PLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEG-----WFRLLPDPRAEEESGG 113
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 8e-12
Identities = 43/128 (33%), Positives = 59/128 (46%), Gaps = 8/128 (6%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFS---KEKI 112
L V V A+DL GS YVE+ K +TR K NP W + F+ ++
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRL 61
Query: 113 QSSVLEVFV-RDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKG 171
+ VLEV+V DR R ++G+V T P S Q Y LE R +V+G
Sbjct: 62 SNLVLEVYVYNDRRSGRRRSFLGRVRISG----TSFVPPSEAVVQRYPLEKRGLFSRVRG 117
Query: 172 EVMLAVWI 179
E+ L V+I
Sbjct: 118 EIGLKVYI 125
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-11
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 56 LYVRVEKARDLPTNPVSGS--CDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQ 113
L V V +A+DL SG DPY + +G + KT+ NP+W F Q
Sbjct: 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ 62
Query: 114 SSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD--DRKVKG 171
+ +L++ + D++ DY+G+ + EV +W L+ R V G
Sbjct: 63 NQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQS--DKWITLKSTRPGKTSVVSG 120
Query: 172 EVML 175
E+ L
Sbjct: 121 EIHL 124
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-11
Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 27/128 (21%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFE----KKSN-PEWKQVFAF--- 107
L VRV + RDL +G+CDP+ V L NY KT KK+N P + + F F
Sbjct: 1 LSVRVLECRDLALK-SNGTCDPFARVTL-NYSSKTDTKRTKVKKKTNNPRFDEAFYFELT 58
Query: 108 ---SKEKIQSSVLEVFVRDREI---------VGRDDYIGKVVFDMNEVPTRVPPDSPLAP 155
S EK V E + E+ V DD++G+V + + +
Sbjct: 59 IGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQA---- 114
Query: 156 QWYRLEDR 163
WY L+ R
Sbjct: 115 -WYFLQPR 121
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 4e-11
Identities = 41/134 (30%), Positives = 55/134 (41%), Gaps = 16/134 (11%)
Query: 380 IGILEVGILSAQGLLPMKTRD-GRGTTDAYCVAKYGLKWV--RTRTLVDNFNPKWNEQYT 436
IG+L V I SA+GL K D GT D Y + RT+ D NP WNE
Sbjct: 1 IGVLAVTIKSARGL---KGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKY 57
Query: 437 WEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTH-SYPLLVLNPS 495
V + L V+D + + D IG LS+L + + + LL
Sbjct: 58 ILVNSLTEPLNLTVYDF-----NDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLL----R 108
Query: 496 GVKKMGELQLAVRF 509
K +GEL +RF
Sbjct: 109 NGKPVGELNYDLRF 122
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 5e-11
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL---GNYKGKTRHFEKKSNPEWKQVFAF---SK 109
L +++ KA +LP SG+ DP+V++ L +K +T+ K NP W + F F
Sbjct: 18 LTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 77
Query: 110 EKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEV 143
EK+Q VL + V D + R+D IG+V +N+V
Sbjct: 78 EKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKV 111
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 4e-10
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP 442
L V ++ AQ L+P +DG+G++ AY + + RTRT + NP WNE+ + V DP
Sbjct: 2 LVVEVVDAQDLMP---KDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDP 58
Query: 443 CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTL--EADRIYTHSYPL 489
+ L + + + S +G+VRI ++ ++ + YPL
Sbjct: 59 SRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQR-YPL 106
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 7e-10
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 58 VRVE--KARDLPTNPVSGSCDPYVEVKLG--NYKGKTRHFEKKSNPEWKQVFAFSKEKIQ 113
VRV +AR+L +G DPY+++KLG + + NP + ++F
Sbjct: 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPG 61
Query: 114 SSVLEVFVRDREIVGRDDYIGKVVFDM 140
+S+L++ V D +++G DD IG+ V D+
Sbjct: 62 NSILKISVMDYDLLGSDDLIGETVIDL 88
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 1e-09
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL---GNYKGKTRHFEKKSNPEWKQVFAFSKEKI 112
L VRV +A ++ + + D YVE+ L + K +T+ + NP W + F F +
Sbjct: 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ 61
Query: 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVP 144
+VLE+ V D + V DD++G V+FD++++
Sbjct: 62 VKNVLELTVMDEDYV-MDDHLGTVLFDVSKLK 92
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 3e-09
Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 20/125 (16%)
Query: 219 LRVNVIEAQDVEPLDKSQLP------QAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFV 272
LR++VIEAQD+ DK +V +VG Q K+K+ NP WNE ++
Sbjct: 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVI-KENLNPKWNE--VYE 59
Query: 273 AAEPFEEQLVLTVE--NKVTPAKDEPLGRLRLSLNVIE--RRLDHRPVHSKWFNLEKFGF 328
A L +E ++ P KD+ LGRL + L +E +D +W LE
Sbjct: 60 AVVDEVPGQELEIELFDE-DPDKDDFLGRLSIDLGSVEKKGFID------EWLPLEDVKS 112
Query: 329 GALEL 333
G L L
Sbjct: 113 GRLHL 117
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 7e-09
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 22/123 (17%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKS--------NPEWKQVFAF 107
+ V + KAR+L ++G+ DPYV+V L YK K EKK NP + + F F
Sbjct: 17 ITVNIIKARNLKAMDINGTSDPYVKVWL-MYKDK--RVEKKKTVIKKRTLNPVFNESFIF 73
Query: 108 S--KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVP--------PDSPLAPQW 157
+ E+++ + L + V D++ + R+D IGK+ + P P+A QW
Sbjct: 74 NIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQPVA-QW 132
Query: 158 YRL 160
+RL
Sbjct: 133 HRL 135
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 7e-09
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 14/126 (11%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFSKEKI 112
L + +++ R+L G+ DPYV+ K G YK KT + K NP W + F E +
Sbjct: 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIY--KNLNPVWDEKFTLPIEDV 59
Query: 113 -QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKG 171
Q ++VF D + DD++G D++ + P + L +LED D + G
Sbjct: 60 TQPLYIKVF--DYDRGLTDDFMGSAFVDLSTLELNKPTEVKL-----KLEDPNSDEDL-G 111
Query: 172 EVMLAV 177
+ L V
Sbjct: 112 YISLVV 117
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-08
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 399 RDGRGTTDAYCVAKYGLKWV-RTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLG 457
RD GT+D Y KYG K V +++T+ N NP W+E++T + D + + VFD G
Sbjct: 15 RDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDY-DRG 73
Query: 458 GSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFT 510
+ D +G + LSTLE ++ L +P+ + +G + L V T
Sbjct: 74 LT----DDFMGSAFVDLSTLELNKPTEVKLKL--EDPNSDEDLGYISLVVTLT 120
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-08
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEV 439
+G+L+V ++ L RD ++D Y V G + V+TR + N NP WNE+ T V
Sbjct: 1 LGLLKVRVVRGTNLA---VRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSV 56
Query: 440 YDPCTVITLGVFD 452
+P + L VFD
Sbjct: 57 PNPMAPLKLEVFD 69
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-08
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 9/126 (7%)
Query: 58 VRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAF-----SKEKI 112
V V +AR L SG+ D YV ++LG K T EK ++P WK+ +F
Sbjct: 3 VTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNG 62
Query: 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR-DDRKVKG 171
+ L++ V R ++G D ++G+V +N++ +W++LE + D K +G
Sbjct: 63 NRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDED---KGRRRTRWFKLESKPGKDDKERG 119
Query: 172 EVMLAV 177
E+ + +
Sbjct: 120 EIEVDI 125
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 1e-08
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 29/138 (21%)
Query: 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAF------- 107
Y+Y +ARDL SG DP+ V N +T ++ +P W Q F
Sbjct: 6 YIY----QARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYG 61
Query: 108 SKEKIQSS----VLEVFVRDREIVGRDDYIGKVVFD----MNEVPTRVPPDSPLAPQWYR 159
S E+I + V+E+F D++ VG+D+++G+ V ++ P QW+
Sbjct: 62 SPEEIAQNPPLVVVELF--DQDSVGKDEFLGRSVAKPLVKLDLEEDFPPK-----LQWFP 114
Query: 160 LEDRRDDRKVKGEVMLAV 177
+ + GE++ A
Sbjct: 115 I---YKGGQSAGELLAAF 129
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-08
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 56 LYVRVEKARDLP-TNPVSGSCDPYVEVKL---GNYKGKTRHFEKKSNPEWKQVFAF---S 108
L V + + RDLP + SG+ DPYV+++L +K KTR K NP + + F F
Sbjct: 18 LLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIP 77
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPT 145
++Q L V + RDD IG+VV +
Sbjct: 78 YNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADL 114
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-08
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKS-NPEWKQVFAFSKEKIQ 113
YL V V +A+DL + + + +V+ +LGN +TR + ++ NP W + F +
Sbjct: 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF 60
Query: 114 SSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEV 173
L + V DR +D+ +G+ V +N++ RV D P+ +W+ LE + K +
Sbjct: 61 EDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRV-DDRPVPSRWFSLERPGGAMEQKKKR 119
Query: 174 MLA 176
A
Sbjct: 120 KFA 122
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-08
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGK---TRHFEKKSNPEWKQVFAFS--KE 110
L V + +A DLP + G+ DPYV+V L K K T+ K NP + + F F
Sbjct: 18 LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYS 77
Query: 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEV 143
++ + L V D + + D IG+V + V
Sbjct: 78 ELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTV 110
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 3e-08
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAF----SKEK 111
+ + V A+ L +G+ DPYV V++G K +T+ + NP W + F F S ++
Sbjct: 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDR 62
Query: 112 IQSSV------LEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165
I+ V ++ ++ + DD++G+ + ++ + S WY LE R D
Sbjct: 63 IKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTL-------SGEMDVWYNLEKRTD 115
Query: 166 DRKVKGEVMLAV 177
V G + L +
Sbjct: 116 KSAVSGAIRLHI 127
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-08
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL-------GNYKGKTRHFEKKSNPEWKQVFAFS 108
L V + AR+L +GS DP+V+V+L KT+ +K P + + F F+
Sbjct: 18 LRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN 77
Query: 109 KEKIQSSV---LEVF-VRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQ 156
Q SV L +F V+D +++G +D+ G+ +N++P S
Sbjct: 78 VPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGVEDTSSAQGFG 129
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 5e-08
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKS-------NPEWKQVFAFS 108
L V V KAR LP VSG DPYV+V L Y GK R +KK+ NP + + F F
Sbjct: 17 LTVVVLKARHLPKMDVSGLADPYVKVNL--YYGKKRISKKKTHVKKCTLNPVFNESFVFD 74
Query: 109 --KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPT 145
E+++ +E V D + V +++ IG++V +
Sbjct: 75 IPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKASGS 113
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 5e-08
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 14/127 (11%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYK-GKTRHFEKKSNPEWKQVFAFSKEKIQS 114
LY+R+ + ++LP ++GS DPY VK+ N +T K NP W + +
Sbjct: 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFH 61
Query: 115 SVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQ----WYRLEDRRDDRKVK 170
+V +V D + + RDD IGKV + P+ W L + D +V+
Sbjct: 62 TV-SFYVLDEDTLSRDDVIGKVSLTREVISAH--------PRGIDGWMNLTEVDPDEEVQ 112
Query: 171 GEVMLAV 177
GE+ L +
Sbjct: 113 GEIHLEL 119
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 8e-08
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFE 278
L V ++E +D++P + + + E +G+Q KTK+ T NP WN + F + +
Sbjct: 17 LMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSD-TLNPKWNSSMQFFVKDLEQ 75
Query: 279 EQLVLTVENKVTPAKDEPLGRLRLSLNVI--ERRLDHRPVHSK 319
+ L +TV ++ + D+ LGR + + I E + P+ +
Sbjct: 76 DVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKR 118
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-07
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 15/120 (12%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNE--DLIFVAAEP 276
+ + ++E +++ P+D + L +V+ ++GN+ K+K+C +T NP W E DL
Sbjct: 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCS-KTLNPQWLEQFDL-----HL 55
Query: 277 FEEQ---LVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALEL 333
F++Q L + V +K T KDE +GR + L L HS LE L L
Sbjct: 56 FDDQSQILEIEVWDKDTGKKDEFIGRCEIDL----SALPREQTHSLELELEDGEGSLLLL 111
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVY 440
G L+V ++ A GL D G +D +CV + ++T T+ NP+WN+ +T+ +
Sbjct: 1 GFLQVKVIRASGLA---AADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIK 57
Query: 441 DPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRL 474
D V+ + V+D KP+ +GKV I L
Sbjct: 58 DIHDVLEVTVYDE----DKDKKPEF-LGKVAIPL 86
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-07
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFE 278
L V V++AQD+ P D A+VE Q +T+ P + NP+WNE L+F ++P
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKP-KDLNPVWNEKLVFNVSDPSR 60
Query: 279 EQ---LVLTVENKVTPAKDEP-LGRLRLSLNVIERRLDHRPVHSKWFNLEK 325
L + V N + LGR+R+S + + LEK
Sbjct: 61 LSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQ---RYPLEK 108
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-07
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKS-------NPEWKQVFAF- 107
L V V K R+LP S DPYV + L K++ +K+ NP + + F F
Sbjct: 18 LIVTVHKCRNLPPCDSSDIPDPYVRLYL--LPDKSKSTRRKTSVKKDNLNPVFDETFEFP 75
Query: 108 -SKEKIQSSVLEVFVRDRE--IVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161
S E+++ L+V V++ + + +G+V+ D++++ S QWY L
Sbjct: 76 VSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDL-----DLSKGFTQWYDLT 127
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-07
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 17/132 (12%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKG-------KTRHFEKKSNPEWKQVFAF- 107
L V+V DL + G+ DPYV++ L + G +T+ +K NP+W + F F
Sbjct: 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61
Query: 108 ---SKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVP-PDSPLAPQWYRLEDR 163
+ ++ + EVF +R + RDD++G+V +N +PT P + + Y L R
Sbjct: 62 VNPREHRL---LFEVFDENR--LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR 116
Query: 164 RDDRKVKGEVML 175
+VKG + L
Sbjct: 117 SSKSRVKGHLRL 128
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 2e-07
Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSS 115
L+V ++ A++LP + PYVE+ +G K++ E+ +NP W++ F F ++
Sbjct: 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQ 61
Query: 116 VLEVFVRDRE 125
LE+ V+D +
Sbjct: 62 ELEIEVKDDK 71
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-07
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQ--VGNQVLKTK--LCPTRTTNPLWNEDLIF-VA 273
L V V++A+++ P D L +V+ G + LK K T NP++NE F V
Sbjct: 16 LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75
Query: 274 AEPFEE-QLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDH 313
AE EE LV+TV +K + ++E +G++ L + L+H
Sbjct: 76 AEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEH 116
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-07
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFS-KEKIQS 114
L VRV + +L + S DPYV + LGN K KTR +K NP W + S +
Sbjct: 4 LKVRVVRGTNLAVRDFTSS-DPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAP 62
Query: 115 SVLEVFVRDREIVGRDDYIGKVVFDM 140
LEVF D++ +DD +G+ D+
Sbjct: 63 LKLEVF--DKDTFSKDDSMGEAEIDL 86
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-07
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 665 WADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMATQ 714
W +AV PD L + ++ + D V L S+ +G++
Sbjct: 77 WKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-07
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 16/113 (14%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL-----GNYKGKTRHFEKKSNPEWKQVFAF--- 107
L V V +A++L +G DPYV++KL K KT+ +K NP W + F F
Sbjct: 15 LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74
Query: 108 SKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160
+K + +EV+ DR R+D++G + F ++E+ ++P D WY+L
Sbjct: 75 PADKDRRLSIEVWDWDR--TTRNDFMGSLSFGVSEL-IKMPVDG-----WYKL 119
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-07
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSS 115
L V + + RDL +G DPY EV +G+ + KT+ NP+W F + ++
Sbjct: 17 LMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQD 76
Query: 116 VLEVFVRDREIVGRDDYIGK 135
VL + V DR+ DD++G+
Sbjct: 77 VLCITVFDRDFFSPDDFLGR 96
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 7e-07
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP 442
+ + ++ AQGL+ +D GT+D Y + G RT+T+ N NP WNE++ +E ++
Sbjct: 3 ISITVVCAQGLI---AKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS 59
Query: 443 CTVITLGVFD 452
I + V+D
Sbjct: 60 SDRIKVRVWD 69
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 7e-07
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 52 QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAF---- 107
Q F + VRV +AR L + DP V+V++G K T + + P + + F F
Sbjct: 2 QDFQVRVRVIEARQLVGG----NIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHE 57
Query: 108 SKEKIQSSVLEVFVRDREIVGRDDYIGKVVFD 139
S +++ ++++ V D + D IG D
Sbjct: 58 SPDELFDKIIKISVYDSRSLRSDTLIGSFKLD 89
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 7e-07
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN---YKGKTRHFEKKS-NPEWKQVFAFSKEK 111
L V V A +LP+ +G DP+V+ L +K KT KK+ NP W + F
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKT---IKKTLNPVWNESFEVPVPS 57
Query: 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEV 143
+VL+V V D + G+DD +G D++++
Sbjct: 58 RVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDL 89
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 8e-07
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 71 VSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAF--SKEKIQSSVLEVFVRDREIVG 128
V G DPYV V++G K++ ++ NP+W +V+ + Q +E+F D
Sbjct: 24 VKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDED---PD 80
Query: 129 RDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLED 162
+DD++G++ D+ V +W LED
Sbjct: 81 KDDFLGRLSIDLGSV-----EKKGFIDEWLPLED 109
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 55 YLY-VRVEKARDLPTNPVSGSCDPYVEVKLGNYK---GKTRHFEKKSNPEWKQVFAFSKE 110
+L+ +R+ +A +L + +G DPYV + N K KTR NP W + F
Sbjct: 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVP 60
Query: 111 KIQSSVLEVFVRDREIVGRDDYIGKVVF 138
+ + V DR VG+ D G+
Sbjct: 61 AGEPLWISATVWDRSFVGKHDLCGRASL 88
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 30/128 (23%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKS-------NPEWKQVFAF- 107
L V + +A++L V G DPYV++ L + R +KK+ NP + + F+F
Sbjct: 17 LTVVILEAKNLKKMDVGGLSDPYVKIHL--MQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74
Query: 108 -SKEKIQSSVLEVFVRDREIVGRDDYIGKVVF-------------DMNEVPTRVPPDSPL 153
E+IQ L V V D + +G++D IGKVV DM P R P+
Sbjct: 75 VPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLASPRR-----PI 129
Query: 154 APQWYRLE 161
A QW+ L+
Sbjct: 130 A-QWHTLQ 136
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 381 GILEVGILSAQGLLPMKTRD------GRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQ 434
G+L + ++ AQ L +D +G +D Y + + G + +++ + +N NPKWNE
Sbjct: 1 GVLRIHVIEAQDL---VAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEV 57
Query: 435 YTWEVYD-PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489
Y V + P + + +FD D +G++ I L ++E PL
Sbjct: 58 YEAVVDEVPGQELEIELFDE------DPDKDDFLGRLSIDLGSVEKKGFIDEWLPL 107
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 47 YDLVEQMFYLYVRVEKARDLPT-NPVSGSCDPYVEVKL----GNYKGKTRHFEKKSNPEW 101
YDL E+ L V + KAR+LP CDP+V+V L +++ K NP +
Sbjct: 9 YDLEEE--QLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSL-QSKVKRKTQNPNF 65
Query: 102 KQVFAF--SKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEV 143
+ F F S +++Q L + V D + R IG V+F + ++
Sbjct: 66 DETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDL 109
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 14/124 (11%)
Query: 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTR-HFEKKSNPEWKQ--VFAFSKEK 111
L V V KAR+LP DPY +++G KT+ F +PEW + F +++K
Sbjct: 2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDK 61
Query: 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKG 171
+ VF D+ + D IG D++ D WY L + G
Sbjct: 62 KPILKVAVFDDDKR---KPDLIGDTEVDLSPALKEGEFD-----DWYELT---LKGRYAG 110
Query: 172 EVML 175
EV L
Sbjct: 111 EVYL 114
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-06
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
Query: 219 LRVNVIEAQDVEPLDK-SQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWN-EDLIFVAAEP 276
L+V V+ A+D+ +D+ S L AFVE + G+ KT + ++ NP+WN E F +
Sbjct: 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVV-KKSLNPVWNSEWFRFEVDDE 59
Query: 277 --FEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVH--SKWF 321
+E L + V + T + ++ +G++ + LN + L V S WF
Sbjct: 60 ELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPL---LLKDSVSQISGWF 105
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 6e-06
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
Query: 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVY- 440
++ + ++ + L PM D G +D Y + G + +++ NP+W EQ+ ++
Sbjct: 1 VVTIVLVEGKNLPPM---DDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFD 57
Query: 441 DPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489
D ++ + V+D K D IG+ I LS L ++ ++ L
Sbjct: 58 DQSQILEIEVWDK-----DTGKKDEFIGRCEIDLSALPREQTHSLELEL 101
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-06
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVY 440
G+L V ++ A+ L K R G+G +D Y + G + +T+T+ + NPKWN + ++
Sbjct: 1 GVLRVHVVEAKDLAA-KDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIF 59
Query: 441 DP-CTVITLGVFD 452
++ L ++D
Sbjct: 60 SAQNQLLKLILWD 72
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-06
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL---GNYKGKTRHFEKKSNPEWKQVFAF--SKE 110
L V++ +AR+L SG+ DPY +V+L + +++ +K NPE+ + F F +
Sbjct: 18 LNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQ 77
Query: 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEV 143
++ LEV + D + RD+ IG V + EV
Sbjct: 78 ELPKRTLEVLLYDFDQFSRDECIGVVELPLAEV 110
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 6e-06
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL-----GNYKGKTRHFEKKSNPEWKQVF---AF 107
L+V V++A++LP G+ D +V+ L K KT +K NP W F
Sbjct: 29 LHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGV 88
Query: 108 SKEKIQSSVLEVFVRDREIVGRDDYIGKV 136
S E + + LE+ V D + + +D++G V
Sbjct: 89 SPEDLSQACLELTVWDHDKLSSNDFLGGV 117
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 8e-06
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 44 TSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKL--GNYKG-----KTRHFEKK 96
T YD L+ + +A+ L +G DPYV++ L G K KT H K
Sbjct: 7 TLLYD--PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVH--KT 62
Query: 97 SNPEWKQVFAF---SKEKIQSSVLEVFVRDREIVGRDDYIGKV 136
NPE+ + + ++E IQ L + V D + G +D++G+
Sbjct: 63 RNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFG-NDFLGET 104
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 8e-06
Identities = 35/129 (27%), Positives = 48/129 (37%), Gaps = 26/129 (20%)
Query: 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAK-YGLKWVRTRTLVDNF---NPKWNEQYTW 437
LE+ I+SA+ L K + G Y V T VD NP WNE +
Sbjct: 1 TLEITIISAEDL---KNVNLFGKMKVYAVVWIDPSHKQSTP--VDRDGGTNPTWNETLRF 55
Query: 438 -----EVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTL-----EADRIYTHSY 487
+ +T+ V+ C G K IG+VR+ L L A + SY
Sbjct: 56 PLDERLLQQGRLALTIEVY--CERPSLGDKL---IGEVRVPLKDLLDGASPAGELRFLSY 110
Query: 488 PLLVLNPSG 496
+ PSG
Sbjct: 111 Q--LRRPSG 117
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-05
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 8/115 (6%)
Query: 63 ARDLPTNPVSGSCDPYVEVKL-GNYKGKTR-HFEKKSNPEWKQVFAFS-KEKI---QSSV 116
A DL + G Y V + ++K T + +NP W + F E++
Sbjct: 9 AEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLA 68
Query: 117 LEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKG 171
L + V D IG+V + ++ P L Y+L RR K +G
Sbjct: 69 LTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQL--RRPSGKPQG 121
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|175977 cd04010, C2B_RasA3, C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 28/129 (21%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGK-----TRHFEKKSNPEWKQVFAF--- 107
L VRV + DL +G+CDPY V L K T+ +K +NP++ + F F
Sbjct: 2 LSVRVIECSDLALK--NGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVT 59
Query: 108 ---SKEKIQSSVLEVFVRDREIV---------GRDDYIGKVVFDMNEVPTRVPPDSPLAP 155
S EK Q + E E+ G D ++G+V +P R +
Sbjct: 60 IDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEV-----RIPLRGLDLQAGSH 114
Query: 156 Q-WYRLEDR 163
Q WY L+ R
Sbjct: 115 QAWYFLQPR 123
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 148 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 241 FVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLG 298
+V +GNQ +KT++ + NP+WNE+L P L L V +K T +KD+ +G
Sbjct: 25 YVVLTLGNQKVKTRVI-KKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDDSMG 80
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 48 DLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKG-KTRHFEKKSNPEWKQVFA 106
++VE YL + + +LP++ +G DP+V++ L KT+ +K NP W + F
Sbjct: 1034 EMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFT 1093
Query: 107 FSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVP 148
VL + V D + ++D +G D++++
Sbjct: 1094 IEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGT 1135
|
Length = 1227 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 76 DPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFS--------KEKIQSSVLEVFVRDREIV 127
DPYVEV K KT + NPEW + F + KIQ +RD + V
Sbjct: 36 DPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ-------IRDWDRV 88
Query: 128 GRDDYIGKVVFDMNEV 143
G DD IG D++++
Sbjct: 89 GNDDVIGTHFIDLSKI 104
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYK-GKTRHFEKKSNPEWKQVFAFS--KEKI 112
L +R+ +A++LP+ G+ DPY V L + +T+ EK NP W + F F +
Sbjct: 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEKL-NPFWGEEFVFDDPPPDV 57
Query: 113 QSSVLEVFVRDREIVGRDDYIGKV 136
L + +D+ RD IGKV
Sbjct: 58 TFFTLSFYNKDKRSKDRDIVIGKV 81
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-05
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 371 TARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPK 430
AR IG L V I+ + L K + G +D YC G + +T+ + D NPK
Sbjct: 5 LARSQRASGIGRLMVVIVEGRDL---KPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPK 61
Query: 431 WNEQYTWEVYD-PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADR 481
WN + V D V+ + VFD PD +G+ IR++ + +
Sbjct: 62 WNSSMQFFVKDLEQDVLCITVFDRDFF-----SPDDFLGRTEIRVADILKET 108
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-05
Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 7/120 (5%)
Query: 58 VRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVL 117
V V A L G DPYV +K ++ + +PE+ F ++K +S +
Sbjct: 7 VHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIK 66
Query: 118 EVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAV 177
+ V + ++ D+++G+ + ++ PL + R +V G + + V
Sbjct: 67 -IQVWNSNLL-CDEFLGQATLSADPNDSQTLRTLPLRKR-----GRDAAGEVPGTISVKV 119
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 6e-05
Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 14/86 (16%)
Query: 58 VRVEKARDLPTNPVS--GSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFS----KE 110
+ + KA DL + G DPYV V + KG+T NP W +V +
Sbjct: 5 LHIRKANDLK--NLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQ 62
Query: 111 KIQSSVLEVFVRDREIVGRDDYIGKV 136
KI LEV D E VG+D +G V
Sbjct: 63 KI---TLEVM--DYEKVGKDRSLGSV 83
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 8e-05
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 385 VGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQ 434
V + SA+GL +D G D Y + K + VR+ D +P+++ Q
Sbjct: 7 VHVHSAEGL---SKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQ 53
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 8e-05
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 56 LYVRVEKARDL-PTNPVSGSCDPYVEV-----KLGNYKGKTRHFEKKSNPEWKQVFAF-- 107
L V +++ R+L + +PYV+V K K KT + +NP + + +
Sbjct: 16 LEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHI 75
Query: 108 SKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160
SK ++++ L++ V + GR+ ++G+V ++ DS +WY L
Sbjct: 76 SKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDL----DSQ-QSEWYPL 123
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 9e-05
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFE 278
LR +V+EA+D+ P D++ FV Q L+T + ++ P WNE F E +
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVV-KKSCYPRWNEVFEFELMEGAD 60
Query: 279 EQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHE 338
L + V + +K++ LG++ S+ L WF L ++
Sbjct: 61 SPLSVEVWDWDLVSKNDFLGKVVFSIQ----TLQQAKQEEGWFRLLPDP----RAEEESG 112
Query: 339 LKFSS-RIHLR 348
S R+ +R
Sbjct: 113 GNLGSLRLKVR 123
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 60 VEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKI--QSSVL 117
V ++LP G D +V K KTR E + NP W + F + L
Sbjct: 2 VVSLKNLPGLK--GKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESL 59
Query: 118 EVFVRDREIVGRDDYIGKVVFDMNEV 143
E+ V+D E VGR+ IG + ++
Sbjct: 60 EIVVKDYEKVGRNRLIGSATVSLQDL 85
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 17/72 (23%)
Query: 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNE--------- 433
L V +L A GL D +TD Y +G + RT + +N NP+WN
Sbjct: 30 LTVTVLRATGLWG----DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVEL 85
Query: 434 ----QYTWEVYD 441
+ +EV+D
Sbjct: 86 SPGGKLRFEVWD 97
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 220 RVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIF-----VAA 274
+V V++A+ + KS A+V Q+G + T + +TT+P+W E+ F ++
Sbjct: 2 QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSV-KEKTTSPVWKEECSFELPGLLSG 60
Query: 275 EPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLE 324
L LTV ++ D+ LG++ + LN ++ R +WF LE
Sbjct: 61 NGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRT--RWFKLE 108
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLV--DNFNPKWNEQYTWE 438
G LEV ++SA+GL + D G D Y + + + R + D NP+WNE++ +
Sbjct: 1 GTLEVLLISAKGL---QDTDFLGKIDPYVIIQCRTQ-ERKSKVAKGDGRNPEWNEKFKFT 56
Query: 439 VYDPC----TVITLGVFD 452
V P T + L + D
Sbjct: 57 VEYPGWGGDTKLILRIMD 74
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 3e-04
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 231 PLDKSQL-PQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKV 289
PL KS P +VE VG K+K+ RT NP+W E F+ P ++L + V++
Sbjct: 13 PLAKSTKEPSPYVELTVGKTTQKSKVK-ERTNNPVWEEGFTFLVRNPENQELEIEVKDDK 71
Query: 290 TPAKDEPLGRLRLSL 304
T + LG L L L
Sbjct: 72 T---GKSLGSLTLPL 83
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 4e-04
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 377 KQPIGILEVGILSAQGLLPMKTRDG--RGTTDAYCVAKYGLKWV-RTRTLVDNFNPKWNE 433
IG++EV I SA+GL K D GT D Y + + + +TR + NP WNE
Sbjct: 432 GTAIGVVEVKIKSAEGL---KKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNE 488
Query: 434 QYTWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEAD 480
+ + + L ++D + K D +G ++ L+ L +
Sbjct: 489 TFYILLNSFTDPLNLSLYDF-----NSFKSDKVVGSTQLDLALLHQN 530
|
Length = 1227 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 63 ARDLPTNPVSGSCDPYVEVKLGNYKGKTRHF----EKKSNPEWKQVFAFSKEKIQSSV-- 116
A+ L G DPYV + + + R NPEW + F F+ E
Sbjct: 10 AKGLQDTDFLGKIDPYVII---QCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDT 66
Query: 117 -LEVFVRDREIVGRDDYIGKVVFDMNEV 143
L + + D++ DD+IG+ + +
Sbjct: 67 KLILRIMDKDNFSDDDFIGEATIHLKGL 94
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 8e-04
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 382 ILEVGILSAQGLLPMKTRDGRGTTDAY-CVAKYGLKWV-----RTRTLVDN-FNPKWNEQ 434
L + I+S Q L P D D Y V +GL +T+ + +N FNP WNE
Sbjct: 3 TLTIKIISGQQL-PKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNET 61
Query: 435 YTWEVYDP 442
+ ++V P
Sbjct: 62 FEFDVTVP 69
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 9e-04
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL-----GNYKGKTRHFEKKSNPEWKQVFAF--S 108
L V + + +L +G DP+V++ L K KT+ +K NPE+ + F +
Sbjct: 15 LIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIK 74
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIGKV 136
+ LE+ V D++I +DYIG +
Sbjct: 75 HSDLAKKTLEITVWDKDIGKSNDYIGGL 102
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 218 YLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPF 277
YL V V++A+ + P + + VE ++GN TK RT+NP WN+ F
Sbjct: 1 YLYVRVVKARGL-PANSNDP---VVEVKLGNYKGSTK-AIERTSNPEWNQVFAFSKDRLQ 55
Query: 278 EEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRL--DHRPVHSKWFNLE 324
L ++V +K KD+ LG + L+ + R+ D P+ +W+ LE
Sbjct: 56 GSTLEVSVWDKDKA-KDDFLGGVCFDLSEVPTRVPPD-SPLAPQWYRLE 102
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.001
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 17/117 (14%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIF------- 271
+ + V+ AQ + DK+ +V QVG +TK P + NP+WNE F
Sbjct: 3 ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIP-QNLNPVWNEKFHFECHNSSD 61
Query: 272 ---VAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEK 325
V ++ + ++ K T D+ LG+ + + + +D W+NLEK
Sbjct: 62 RIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGEMD------VWYNLEK 112
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.001
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 24/124 (19%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL---GNYKGKTRHFEKKS--NPEWKQ--VFAFS 108
L + + KAR+L ++G DPYV+V L G K + KK+ NP + + VF
Sbjct: 16 LTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVP 75
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPP----------DSPLAP--Q 156
E + + L + V D + VG ++ IG + V +P P Q
Sbjct: 76 PENVDNVSLIIAVVDYDRVGHNELIG-----VCRVGPNADGQGREHWNEMLANPRKPIAQ 130
Query: 157 WYRL 160
W++L
Sbjct: 131 WHQL 134
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 22/125 (17%)
Query: 215 KLWY------LRVNVIEAQDVEPLDKSQLPQAFV------EAQVGNQVLKTKLCPTRTTN 262
+LWY L V V++A+D+ P D L +V + ++ +TK +T N
Sbjct: 8 QLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKR-RTKTVK-KTLN 65
Query: 263 PLWNEDLIF--VAAEPFEE-QLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSK 319
P WN+ + V E +E L +TV + +++ LG + + L + LD P
Sbjct: 66 PEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLA--DALLDDEPH--- 120
Query: 320 WFNLE 324
W+ L+
Sbjct: 121 WYPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQV-GNQVLKTKLCPTRTTNPLWNEDLIFV--AAE 275
L + +I A+D++ ++ + + + + T + TNP WNE L F
Sbjct: 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERL 61
Query: 276 PFEEQLVLTVE--NKVTPAKDEPLGRLRLSLN 305
+ +L LT+E + D+ +G +R+ L
Sbjct: 62 LQQGRLALTIEVYCERPSLGDKLIGEVRVPLK 93
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 69/404 (17%), Positives = 123/404 (30%), Gaps = 68/404 (16%)
Query: 56 LYVRVEKARDLP--TNPVSGSCDPYVEVKL-GNYKGKTRHFEKKSNPEWKQVFAFSKEKI 112
+ V+++ A L + ++G+ DPY+ V GKTR + NP W + F
Sbjct: 438 VEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF 497
Query: 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGE 172
+ L + + D D +G D+ + + L E R+ K G
Sbjct: 498 -TDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELY------EFLRNT-KNVGR 549
Query: 173 VMLAVWIGTQADEAFPEAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPL 232
+ + + +E + + L+V + E + ++
Sbjct: 550 L------------TYDLRFFP---VIEDKKELKGSVEPLEDSNTGILKVTLREVKALDE- 593
Query: 233 DKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPA 292
S+ E + + + T +P WN ++ +++
Sbjct: 594 LSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQY----NVLVTDRKNSSIKVVTFDV 649
Query: 293 KDE-PLGRLRLSLN-VIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVC 350
+ + +L +I+R LD L R+ RI +
Sbjct: 650 QSGKVIATEGSTLPDLIDRTLD----------------TFLVFPLRNP---KGRIFITNY 690
Query: 351 LEGAYHVMD-ESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYC 409
+ Y+ S PIG + V + A L + G +D Y
Sbjct: 691 WKPIYNAGGSSSKTVYD-----------TPIGAIRVSVRKANDL---RNEIPGGKSDPYA 736
Query: 410 -VAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFD 452
V L RT NP WNE V +TL D
Sbjct: 737 TVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQRLTLECMD 780
|
Length = 1227 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.003
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 14/100 (14%)
Query: 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVD-NFNPKWNEQYTW---E 438
L V ++ AQ L+P D + + A+ G + +RTR N NP WNE+ + E
Sbjct: 2 LRVTVIEAQDLVPS---DKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAE 58
Query: 439 VYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLE 478
++ +++ V D +G+ I L+ +E
Sbjct: 59 PFEDHLILS--VEDRVGPNKDEP-----LGRAVIPLNDIE 91
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 10/113 (8%)
Query: 379 PIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWV-RTRTLVDNFNPKWNEQYTW 437
G L + + S + L + D G +D + K V +T+ + NP WNE++T
Sbjct: 1038 NSGYLTIMLRSGENL---PSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTI 1094
Query: 438 EVYDPCT-VITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489
EV + V+T+ V D SG K D +G I LS LE + PL
Sbjct: 1095 EVLNRVKDVLTINVNDW----DSGEKNDL-LGTAEIDLSKLEPGGTTNSNIPL 1142
|
Length = 1227 |
| >gnl|CDD|176045 cd08400, C2_Ras_p21A1, C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.003
Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRT---TNPLWNEDLIFVAAE 275
L++NV+EA L +P + + N+V K+ T+ NP+W+E+ +F
Sbjct: 6 LQLNVLEAHK---LPVKHVPHPYCVISL-NEV---KVARTKVREGPNPVWSEEFVFDDLP 58
Query: 276 PFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNL 323
P +++ NK +KD + + + L+ +L + +W+ L
Sbjct: 59 PDVNSFTISLSNKAKRSKDSEIAEVTVQLS----KLQNGQETDEWYPL 102
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 126 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.004
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 60 VEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEV 119
V +A+D GS D Y K G +TR E SNP W + + + +VL V
Sbjct: 14 VLRAKDGR-----GSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTV 67
Query: 120 FVRD------REIVGRDDYIGKV 136
V D +E V D IGKV
Sbjct: 68 GVFDNSQSHWKEAVQPDVLIGKV 90
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.004
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 20/110 (18%)
Query: 383 LEVGILSAQGLLPMKTRDGRGTTDAYC------VAKYGLKWVRTRTLVDNFNPKWNEQYT 436
L I+ A+GL M D G +D Y A +RT+T+ NP++NE T
Sbjct: 17 LHCTIIRAKGLKAM---DANGLSDPYVKLNLLPGASKA-TKLRTKTVHKTRNPEFNETLT 72
Query: 437 WEVYDPCTV----ITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRI 482
+ + + L V D G + +G+ RI L L+ ++
Sbjct: 73 YYGITEEDIQRKTLRLLVLDEDRFG------NDFLGETRIPLKKLKPNQT 116
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.004
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Query: 233 DKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPA 292
K+ L + E + +++ T +T NP WN F+ + + ++ + V++
Sbjct: 8 SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDD-RDR 66
Query: 293 KDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFG 329
D LG + +SLN + +D V +WF L G G
Sbjct: 67 HDPVLGSVSISLNDL---IDATSVGQQWFPLSGNGQG 100
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 789 | |||
| PF08372 | 156 | PRT_C: Plant phosphoribosyltransferase C-terminal; | 100.0 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.97 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.96 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.94 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.91 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.9 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.88 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.87 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.87 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.87 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.86 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.85 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.85 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.85 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.84 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.84 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.84 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.83 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.83 | |
| PF11696 | 642 | DUF3292: Protein of unknown function (DUF3292); In | 99.83 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.83 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.83 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.83 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.83 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.83 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.82 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.82 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.82 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.82 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.81 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.81 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.81 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.81 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.81 | |
| PF04842 | 683 | DUF639: Plant protein of unknown function (DUF639) | 99.8 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.8 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.8 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.8 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.8 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.8 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.79 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.79 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.79 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.79 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.79 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.79 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.79 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.79 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.79 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.79 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.78 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.78 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.78 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.78 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.78 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.78 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.78 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.78 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.78 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.77 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.77 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.77 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.77 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.77 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.77 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.77 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.77 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.77 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.77 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.76 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.76 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.76 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.76 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.76 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.76 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.76 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.75 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.75 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.75 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.75 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.74 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.74 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.74 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.74 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.74 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.74 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.74 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.74 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.74 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.74 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.74 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.74 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.73 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.73 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.73 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.72 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.72 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.72 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.72 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.72 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.72 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.72 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.71 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.71 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.71 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.71 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.71 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.71 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.71 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.71 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.71 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.7 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.7 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.7 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.7 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.7 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.7 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.7 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.69 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.69 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.69 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.69 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.69 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.69 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.68 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.68 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.68 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.68 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.68 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.68 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.68 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.68 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.68 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.68 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.68 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.68 | |
| PLN03008 | 868 | Phospholipase D delta | 99.67 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.67 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.67 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.67 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.67 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.67 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.67 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.67 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.67 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.66 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.66 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.66 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.66 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.66 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.65 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.65 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.65 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.65 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.65 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.65 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.65 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.65 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.64 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.64 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.64 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.64 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.64 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.63 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.62 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.62 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.61 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.61 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.61 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.6 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.6 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.6 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.6 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.6 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.59 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.59 | |
| PLN03008 | 868 | Phospholipase D delta | 99.59 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.58 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.58 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.58 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.57 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.57 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.56 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.56 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.56 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.56 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.55 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.54 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.54 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.54 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.54 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.53 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.53 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.53 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.52 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.52 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.51 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.5 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.48 | |
| PF06398 | 359 | Pex24p: Integral peroxisomal membrane peroxin; Int | 99.47 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.44 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.43 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.38 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.38 | |
| PLN02270 | 808 | phospholipase D alpha | 99.35 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.28 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.27 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.24 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.24 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.21 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.21 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.18 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 99.15 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.14 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.14 | |
| PLN02270 | 808 | phospholipase D alpha | 99.13 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 99.11 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.07 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 99.04 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 99.02 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 99.0 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.99 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.99 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.96 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.95 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.92 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.91 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.9 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.89 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.89 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.88 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.85 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.84 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.84 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.81 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.73 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.66 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.64 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 98.61 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.56 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 98.3 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.25 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 97.96 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.92 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.9 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.88 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.76 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.68 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.48 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.45 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 97.41 | |
| PF08372 | 156 | PRT_C: Plant phosphoribosyltransferase C-terminal; | 97.27 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 96.94 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 96.75 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 96.45 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 96.0 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.52 | |
| PF02453 | 169 | Reticulon: Reticulon; InterPro: IPR003388 Eukaryot | 95.31 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 95.16 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 95.15 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 94.91 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 94.73 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 94.68 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 94.04 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 93.93 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 93.73 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 93.68 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 93.04 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 92.98 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 92.87 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 92.17 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 91.94 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 91.42 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 89.76 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 89.74 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 89.63 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 89.43 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 87.95 | |
| KOG1329 | 887 | consensus Phospholipase D1 [Lipid transport and me | 86.96 | |
| PF08151 | 72 | FerI: FerI (NUC094) domain; InterPro: IPR012968 Th | 86.61 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 86.2 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 86.18 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 86.08 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 84.01 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 83.24 | |
| PF11618 | 107 | DUF3250: Protein of unknown function (DUF3250); In | 83.05 | |
| KOG1329 | 887 | consensus Phospholipase D1 [Lipid transport and me | 82.63 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 82.16 | |
| PF11618 | 107 | DUF3250: Protein of unknown function (DUF3250); In | 81.45 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 80.53 |
| >PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=305.49 Aligned_cols=156 Identities=77% Similarity=1.363 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhh
Q 003882 634 LPTIFLYMFLIGIWNYRFRPRHPPHMDTKLSWADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMAT 713 (789)
Q Consensus 634 ~p~~~l~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vq~~l~~~a~ 713 (789)
+|+++++++++++|+|++||+.|+|+|.++|+.+++++||+|||+|.+|++++++.++++|+++++++++|||.+|++|+
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At 80 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVAT 80 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhccccCCchhhHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhccCCcccCCCCCchhhhhhcCCCCcCCCC
Q 003882 714 QGERFQALLSWRDPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFRSKLPSIPSNFFRRLPSRADTML 789 (789)
Q Consensus 714 ~~e~~~~l~~w~~p~~t~~~~~~l~~~~~~~~~iP~r~i~l~~g~~~~~~P~~r~~~p~~~~~~~~rlPs~~~~~~ 789 (789)
++||++|+++|+||.+|++++++|+++++++|++|+|+++++||+|++|||++|.++|+.+.|||+||||++|+||
T Consensus 81 ~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~P~~~~nff~RlPs~~d~~l 156 (156)
T PF08372_consen 81 QGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPLPSPPLNFFRRLPSRSDSML 156 (156)
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCCCcHHHHHHHHCCCchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986
|
It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=279.64 Aligned_cols=228 Identities=31% Similarity=0.433 Sum_probs=198.8
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe---eeeeccccCCCCCeeccEEEEEc--cCC
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY---KGKTRHFEKKSNPEWKQVFAFSK--EKI 112 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~T~~~~~t~nP~wne~f~f~~--~~~ 112 (789)
.|..++++.|+... ..|.|+|++|++|+..+..|.+||||++++.+. +.+|++.++|+||+|||+|.|.+ .++
T Consensus 153 ~G~l~fsl~Yd~~~--~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l 230 (421)
T KOG1028|consen 153 VGNLQFSLQYDFEL--NLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEEL 230 (421)
T ss_pred eeeEEEEEEecccC--CEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHh
Confidence 67889999999987 999999999999999997788999999999974 57999999999999999999996 345
Q ss_pred CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCC-ccceEEEEEEEEeecCCCcCCccC
Q 003882 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDR-KVKGEVMLAVWIGTQADEAFPEAW 191 (789)
Q Consensus 113 ~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~~~~~d~~~~~~~ 191 (789)
....|.+.|||+|+++++++||++.++|..+....... .|.+|....... ...|+|.+++.|.
T Consensus 231 ~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~-----~w~~l~~~~~~~~~~~gel~~sL~Y~----------- 294 (421)
T KOG1028|consen 231 SNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTL-----FWKDLQPSSTDSEELAGELLLSLCYL----------- 294 (421)
T ss_pred ccCEEEEEEEecCCcccccEEEEEEecCccccccccce-----eeeccccccCCcccccceEEEEEEee-----------
Confidence 68999999999999999999999999999998876544 899998864322 2338999999997
Q ss_pred CCCCcccCCCccccccccccccCccEEEEEEEEEeecCCCCCCCCCCCeEEEEEECC-----eEEeeecccCCCCCCccC
Q 003882 192 HSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGN-----QVLKTKLCPTRTTNPLWN 266 (789)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~wn 266 (789)
|..+.|+|.|++|++|..++.++.+||||++.+.. .+++|.+.++ +.||+||
T Consensus 295 ----------------------p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~n 351 (421)
T KOG1028|consen 295 ----------------------PTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVFN 351 (421)
T ss_pred ----------------------cCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCccc
Confidence 34467999999999999999999999999999853 4677888876 9999999
Q ss_pred ceeEEEeeC--CCCCeEEEEEEEccCCCCCCceEEEEEeccc
Q 003882 267 EDLIFVAAE--PFEEQLVLTVENKVTPAKDEPLGRLRLSLNV 306 (789)
Q Consensus 267 e~f~f~~~~--~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~ 306 (789)
|+|.|.+.. .....+.|+|||++.++.+++||.+.+....
T Consensus 352 esf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 352 ETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred ccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 999998753 3445799999999999999999999888764
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=266.60 Aligned_cols=399 Identities=19% Similarity=0.239 Sum_probs=305.9
Q ss_pred ccCceeEEEEEEEEeeCCCCCC--CCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCC
Q 003882 49 LVEQMFYLYVRVEKARDLPTNP--VSGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDRE 125 (789)
Q Consensus 49 ~~~~~~~L~V~v~~a~~L~~~~--~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~ 125 (789)
....+|+|.|+|.+|++|...+ .++..|||+++.+.+. ..||++++++.||+|||+|+..+... ++.|.++|||.+
T Consensus 431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n 509 (1227)
T COG5038 431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFN 509 (1227)
T ss_pred cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc-CCceeEEEEecc
Confidence 4457899999999999999888 6889999999998764 56999999999999999999999887 699999999998
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeecCCCcCCccCCCCCcccCCCcccc
Q 003882 126 IVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFPEAWHSDAATVEGEGVFN 205 (789)
Q Consensus 126 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 205 (789)
.+.+|+.+|.+.++|..|..+..... .-+.+.. .....|+|...+.|.+.........-.. .
T Consensus 510 ~~~sd~vvG~~~l~L~~L~~~~~~~n----e~~e~~~---~~k~vGrL~yDl~ffp~~e~k~~~~~s~--e--------- 571 (1227)
T COG5038 510 SFKSDKVVGSTQLDLALLHQNPVKKN----ELYEFLR---NTKNVGRLTYDLRFFPVIEDKKELKGSV--E--------- 571 (1227)
T ss_pred ccCCcceeeeEEechHHhhhcccccc----ceeeeec---cCccceEEEEeeeeecccCCcccccccc--C---------
Confidence 88999999999999999998755431 2333322 2256899999999886553321110000 0
Q ss_pred ccccccccCccEEEEEEEEEeecCCCCCCCCCCCeEEEEEECCe-EEeeecccCCCCCCccCceeEEEeeCCCCCeEEEE
Q 003882 206 IRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQ-VLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLT 284 (789)
Q Consensus 206 ~~~~~~~~~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~~-~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~ 284 (789)
-......|.+.+++.++++|..... ....-++++++..+ .+.|+..+. +.+|.||+++.-.+.+.....+.+.
T Consensus 572 ----~~ed~n~GI~k~tl~~~~~l~~~~~-~~~~~~a~l~~~~keV~st~~~k~-t~~~~wn~~~~~~v~~~~ns~~~~~ 645 (1227)
T COG5038 572 ----PLEDSNTGILKVTLREVKALDELSS-KKDNKSAELYTNAKEVYSTGKLKF-TNHPSWNLQYNVLVTDRKNSSIKVV 645 (1227)
T ss_pred ----CcccCCcceeEEEeeccccccCccc-cccceeEEEEecceEEeccceeee-ccCCceeeecceEeccCcceeEEEE
Confidence 0011235789999999999986542 22333488888875 556677776 9999999999999988888889999
Q ss_pred EEEccCCCCCCceEEEEEeccccccccCCCCCcceeEEccccCcccchhcccccccccceEEEEEEEcCcccccCCcccc
Q 003882 285 VENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMY 364 (789)
Q Consensus 285 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~ 364 (789)
++|.. ..+.+|+...+|.++..+ ......||++..+ +|+|.+..++.+.+-..
T Consensus 646 ~~d~~---~g~~i~~~~~~l~~li~~---t~dt~~~f~~~~~---------------kg~I~~t~~W~Pi~~~~------ 698 (1227)
T COG5038 646 TFDVQ---SGKVIATEGSTLPDLIDR---TLDTFLVFPLRNP---------------KGRIFITNYWKPIYNAG------ 698 (1227)
T ss_pred ecccc---cCceeccccccchHhhhc---cccceEEEEcCCC---------------cceEEEEeccceeeccc------
Confidence 98874 567889988888887643 4456789999865 69999988776544111
Q ss_pred cCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCC
Q 003882 365 ISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYDPC 443 (789)
Q Consensus 365 ~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~ 443 (789)
..++...+..++|.++|.|..|.+|... ...+.+|||++|.+++. ++||-....++||.||+....++..+.
T Consensus 699 ----~~~s~~~~~~pIg~irv~v~~andl~n~---i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk~ 771 (1227)
T COG5038 699 ----GSSSKTVYDTPIGAIRVSVRKANDLRNE---IPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKN 771 (1227)
T ss_pred ----cccceeeecCccceEEEEeehhhccccc---ccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCCc
Confidence 1123334567899999999999999854 45689999999999774 599999999999999999999999999
Q ss_pred ceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCc---eEe-------eeEeeeecCCCCCccceEEEEEEEEeecC
Q 003882 444 TVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADR---IYT-------HSYPLLVLNPSGVKKMGELQLAVRFTCLS 513 (789)
Q Consensus 444 ~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~---~~~-------~~~~L~~~~~~g~~~~G~i~l~~~f~~~~ 513 (789)
+.+.+.++|....+ .|..||.+.|+++++.... .+. ..-+|. ..|.+.+|++.+..+|.|..
T Consensus 772 ~r~~l~~~~~~~sg-----ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~---~~~~~~~~tit~~~~f~p~~ 843 (1227)
T COG5038 772 QRLTLECMDYEESG-----DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLS---LTGKKVKGTITYKCRFYPAV 843 (1227)
T ss_pred cEEeeeeecchhcc-----ccceeceeeeeeeeeeecCCCcceEEeecCcccccccc---cccCCcceeEEEEEEEEeec
Confidence 99999999999886 8999999999999988621 111 111111 12345579999998888765
Q ss_pred h
Q 003882 514 L 514 (789)
Q Consensus 514 ~ 514 (789)
.
T Consensus 844 i 844 (1227)
T COG5038 844 I 844 (1227)
T ss_pred c
Confidence 4
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=243.55 Aligned_cols=215 Identities=23% Similarity=0.347 Sum_probs=178.3
Q ss_pred cEEEEEEEEEeecCCCCCCCCCCCeEEEEEECC---eEEeeecccCCCCCCccCceeEEEeeC--CCCCeEEEEEEEccC
Q 003882 216 LWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGN---QVLKTKLCPTRTTNPLWNEDLIFVAAE--PFEEQLVLTVENKVT 290 (789)
Q Consensus 216 ~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~---~~~kT~~~~~~t~nP~wne~f~f~~~~--~~~~~l~i~V~d~d~ 290 (789)
...|.|+|++|++|+.++..+.+||||++++.. .+.+|++.++ ++||.|||+|.|.+.. .....|.++|||.|.
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR 244 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence 346999999999999999777899999999984 5788999987 9999999999999643 356789999999999
Q ss_pred CCCCCceEEEEEeccccccccCCCCCcceeEEccccCcccchhcccccccccceEEEEEEEcCcccccCCcccccCCCCc
Q 003882 291 PAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQRP 370 (789)
Q Consensus 291 ~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~ 370 (789)
++++++||++.++|..+.. ......|.++.... ....+..|+|.+.+++.
T Consensus 245 fsr~~~iGev~~~l~~~~~----~~~~~~w~~l~~~~--------~~~~~~~gel~~sL~Y~------------------ 294 (421)
T KOG1028|consen 245 FSRHDFIGEVILPLGEVDL----LSTTLFWKDLQPSS--------TDSEELAGELLLSLCYL------------------ 294 (421)
T ss_pred cccccEEEEEEecCccccc----cccceeeecccccc--------CCcccccceEEEEEEee------------------
Confidence 9999999999999887752 22256799998863 11112238999999853
Q ss_pred ccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE--CC---EEEeeccccCCCCCccccEEEEEEeC---C
Q 003882 371 TARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY--GL---KWVRTRTLVDNFNPKWNEQYTWEVYD---P 442 (789)
Q Consensus 371 ~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~---~~~~T~~~~~t~~P~wne~~~f~v~~---~ 442 (789)
|..|.|+|.|++|++|..++ ..+.+||||++.+ ++ .+.+|.++++++||+|||.|.|.|.. .
T Consensus 295 -------p~~g~ltv~v~kar~L~~~~---~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~ 364 (421)
T KOG1028|consen 295 -------PTAGRLTVVVIKARNLKSMD---VGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLA 364 (421)
T ss_pred -------cCCCeEEEEEEEecCCCccc---CCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhh
Confidence 34589999999999999884 4588999999987 33 34899999999999999999998874 2
Q ss_pred CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcc
Q 003882 443 CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLST 476 (789)
Q Consensus 443 ~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~ 476 (789)
...|.|+|||+|.++ .+++||.+.+....
T Consensus 365 ~~~l~l~V~d~d~~~-----~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 365 EVSLELTVWDHDTLG-----SNDLIGRCILGSDS 393 (421)
T ss_pred eeEEEEEEEEccccc-----ccceeeEEEecCCC
Confidence 458999999999987 77799999998775
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-22 Score=227.63 Aligned_cols=408 Identities=19% Similarity=0.193 Sum_probs=275.2
Q ss_pred ccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCC
Q 003882 49 LVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIV 127 (789)
Q Consensus 49 ~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~ 127 (789)
...++|.++|+|..|++|.....++.+|||++|.+++ .++||-....|.||+|||..+.++..+ .+.+.+++.|+...
T Consensus 706 ~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~sk-~~r~~l~~~~~~~s 784 (1227)
T COG5038 706 YDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSK-NQRLTLECMDYEES 784 (1227)
T ss_pred ecCccceEEEEeehhhcccccccCcccccceEEEecceeEEEEecccCccccceeeeEEEEecCC-ccEEeeeeecchhc
Confidence 4447799999999999999888899999999999998 478999999999999999999999877 47799999999999
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCC------CeeEEcccCCCCCccceEEEEEEEEeecCCCcCC-------------
Q 003882 128 GRDDYIGKVVFDMNEVPTRVPPDSPLA------PQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFP------------- 188 (789)
Q Consensus 128 ~~d~~lG~~~i~l~~l~~~~~~~~~~~------~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~------------- 188 (789)
+.|..+|++.++++++....... .+. ..--+|... .....|.+.+.+.|.+..-....
T Consensus 785 gddr~lg~~~i~vsn~~~k~~~s-~~~~~i~g~~~t~~l~~~--~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~ 861 (1227)
T COG5038 785 GDDRNLGEVNINVSNVSKKDEDS-ALMETIDGAEETGKLSLT--GKKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEK 861 (1227)
T ss_pred cccceeceeeeeeeeeeecCCCc-ceEEeecCcccccccccc--cCCcceeEEEEEEEEeecccCChHHhcchhhhhhHH
Confidence 99999999999999998743221 000 001111111 12467999999988653211000
Q ss_pred -------------ccCCCCCcccCCCcc--ccc------cccccc----cCccEEEEEEEEEeecCCCCCCCCCCCeEEE
Q 003882 189 -------------EAWHSDAATVEGEGV--FNI------RSKVYV----SPKLWYLRVNVIEAQDVEPLDKSQLPQAFVE 243 (789)
Q Consensus 189 -------------~~~~~~~~~~~~~~~--~~~------~~~~~~----~~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~ 243 (789)
..|..|......+.. ... +.+... .-..+.+.++++.++=.. +.-|+.
T Consensus 862 ~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~-------~~~~l~ 934 (1227)
T COG5038 862 RKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPD-------PGQYLQ 934 (1227)
T ss_pred HHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCC-------cceEEE
Confidence 011111110000000 000 001000 112244677777765222 245666
Q ss_pred EEECC--eEEeeecccCCCCCCccCceeEEEeeCCCCCeEEEEEEEccCCCCCCceEEEEEeccccccccCCCCCcceeE
Q 003882 244 AQVGN--QVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWF 321 (789)
Q Consensus 244 v~l~~--~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~ 321 (789)
+.+.+ ...-+..... +..+.|.+.-...+.+..-....+.|.+. ....++.++..+++--++..+ ....+.|+
T Consensus 935 ~f~Dd~~~~~i~s~~~~-t~~~~~~~~g~~~ireL~~s~~tfrv~K~-a~~~dk~v~e~t~~t~~lvs~---~~~kp~~l 1009 (1227)
T COG5038 935 IFFDDASHPQIVSSKAP-TRGERNGESGDTFIRELEYSETTFRVTKN-AKKSDKVVCEVTLPTLDLVSN---AYEKPSSL 1009 (1227)
T ss_pred EEecCCCCceeeccCCc-ccccccchhhhhhhhhhccceEEEEeccC-CcccCceeeecccchhHHHHH---hhCCCcEE
Confidence 66654 1122222212 56677776655566666666788888765 335678888888876666543 23345577
Q ss_pred EccccCcccchhcccccccccceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCC
Q 003882 322 NLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDG 401 (789)
Q Consensus 322 ~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~ 401 (789)
.+.+. ..+.+++.+.+.. ...+ +.+ + -.+.|.|.|.+..|.||+.. |.
T Consensus 1010 n~~g~----------------~~~~v~~~~tPv~----~~l~------~~e--m-v~nsG~l~I~~~~~~nl~~~---d~ 1057 (1227)
T COG5038 1010 NFPGS----------------AKVLVQVSYTPVP----VKLP------PVE--M-VENSGYLTIMLRSGENLPSS---DE 1057 (1227)
T ss_pred ecCCC----------------ceEEEEEEEeecc----cccC------cce--e-ecccCcEEEEEeccCCCccc---cc
Confidence 66542 3555666554331 1111 000 0 23459999999999999987 55
Q ss_pred CCCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCCCCCCCCCCCccEEEEEECccccc
Q 003882 402 RGTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYD-PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEA 479 (789)
Q Consensus 402 ~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~ 479 (789)
+|.+||||++.++++ .++|+++++|+||+|||++..+|.. ..+.+++.|+|||.-. +++.||++.|+|+.+..
T Consensus 1058 ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~-----knd~lg~~~idL~~l~~ 1132 (1227)
T COG5038 1058 NGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGE-----KNDLLGTAEIDLSKLEP 1132 (1227)
T ss_pred CCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCC-----CccccccccccHhhcCc
Confidence 689999999999877 7999999999999999999999985 5789999999999854 89999999999999999
Q ss_pred CceEeeeEeeeecCCCCCccceEEEEEEEEee
Q 003882 480 DRIYTHSYPLLVLNPSGVKKMGELQLAVRFTC 511 (789)
Q Consensus 480 ~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 511 (789)
++.+....+|.+.. .+ ...|.++....|.+
T Consensus 1133 ~~~~n~~i~ldgk~-~~-~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1133 GGTTNSNIPLDGKT-FI-VLDGTLHPGFNFRS 1162 (1227)
T ss_pred CCccceeeeccCcc-eE-ecccEeecceecch
Confidence 99988888886442 11 23466666554443
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-23 Score=222.69 Aligned_cols=251 Identities=24% Similarity=0.328 Sum_probs=204.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
..|.|+|.+|+||++.+..|.+||||.|.++.+ .+||.++.+++.|.|.|+|+|.+... -..|.|.|||.| +++|+.
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc-eeeEEEEEeccc-cccccc
Confidence 569999999999999999999999999999985 68999999999999999999998654 489999999999 899999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeecCCCcCCccCCCCCcccCCCccccccccccc
Q 003882 133 IGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFPEAWHSDAATVEGEGVFNIRSKVYV 212 (789)
Q Consensus 133 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (789)
||.+.|.=.+|......+ .|+.|+.-...+++.|+|++++.+.....
T Consensus 83 IGKvai~re~l~~~~~~d-----~W~~L~~VD~dsEVQG~v~l~l~~~e~~~---------------------------- 129 (800)
T KOG2059|consen 83 IGKVAIKREDLHMYPGKD-----TWFSLQPVDPDSEVQGKVHLELALTEAIQ---------------------------- 129 (800)
T ss_pred cceeeeeHHHHhhCCCCc-----cceeccccCCChhhceeEEEEEEeccccC----------------------------
Confidence 999999999999877666 99999998887889999999998753211
Q ss_pred cCccEEEEEEEEEeecCCCCCCCCCCCeEEEEEECCe----EEeeecccCCCCCCccCceeEEEeeCC------------
Q 003882 213 SPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQ----VLKTKLCPTRTTNPLWNEDLIFVAAEP------------ 276 (789)
Q Consensus 213 ~~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~~----~~kT~~~~~~t~nP~wne~f~f~~~~~------------ 276 (789)
...+...+++++++.+.. ++.+|||+++...+. ..+|++.++ |.+|.|+|.|.|.+...
T Consensus 130 ---~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~ 204 (800)
T KOG2059|consen 130 ---SSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPE 204 (800)
T ss_pred ---CCcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCcc
Confidence 112456666777777665 455999999998753 458999987 99999999999987543
Q ss_pred ---CCCeEEEEEEE-ccCCCCCCceEEEEEeccccccccCCCCCcceeEEccccCcccchhcccccccccceEEEEEEEc
Q 003882 277 ---FEEQLVLTVEN-KVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLE 352 (789)
Q Consensus 277 ---~~~~l~i~V~d-~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~ 352 (789)
....|.+.+|+ .+....+.|+|++.+++..+.. ......||-|.+.+ .|++...+...|.+.+.+++.
T Consensus 205 ~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~----~s~p~~W~~Lqp~~----~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 205 EEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQ----KSSPAAWYYLQPRP----NGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred cCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhh----ccCccceEEEecCC----CcccCCCCCCccceeeeEEee
Confidence 23357778888 4556669999999999988752 22367899998873 455445566688888888764
|
|
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=175.48 Aligned_cols=118 Identities=18% Similarity=0.264 Sum_probs=103.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccC-CCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEK-KSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~-t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
|.|.|+|++|++++..+ .|++||||++.+++++.+|+++.+ +.||+|||+|.|.+.+. ...|.|+|||+|.+++|++
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~~~dd~ 79 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAFTMDER 79 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCCcCCce
Confidence 78999999999998777 789999999999999999999876 79999999999999764 4689999999999999999
Q ss_pred eEEEEEEcc-ccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 133 IGKVVFDMN-EVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 133 lG~~~i~l~-~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
||++.+++. .+..+...+ .||+|.+..+. ...|+|+++++|
T Consensus 80 iG~~~i~l~~~~~~g~~~~-----~W~~L~~~~~~-~~~g~i~l~l~y 121 (121)
T cd04016 80 IAWTHITIPESVFNGETLD-----DWYSLSGKQGE-DKEGMINLVFSY 121 (121)
T ss_pred EEEEEEECchhccCCCCcc-----ccEeCcCccCC-CCceEEEEEEeC
Confidence 999999996 566665444 99999987654 567999999875
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=175.77 Aligned_cols=119 Identities=22% Similarity=0.353 Sum_probs=104.1
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccC-CCCCccccEEEEEEeCCCceEEEEEEeCCCCCC
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVD-NFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGG 458 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~ 458 (789)
.|.|+|+|++|++|+.. + .|++||||+|.+|++++||+++++ +.||+|||.|.|.+.+....|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~---~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~- 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNY---G-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT- 75 (121)
T ss_pred CcEEEEEEEEccCCCcC---C-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc-
Confidence 38999999999998754 2 479999999999999999999876 89999999999999876678999999999986
Q ss_pred CCCCCCCccEEEEEECc-ccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 459 SGTKPDSRIGKVRIRLS-TLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 459 ~~~~~d~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
+|++||.+.|++. .+..++..+.||+|... .|.++.|+|+|.++|
T Consensus 76 ----~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~--~~~~~~g~i~l~l~y 121 (121)
T cd04016 76 ----MDERIAWTHITIPESVFNGETLDDWYSLSGK--QGEDKEGMINLVFSY 121 (121)
T ss_pred ----CCceEEEEEEECchhccCCCCccccEeCcCc--cCCCCceEEEEEEeC
Confidence 8999999999996 57788888999999754 344567999999875
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=176.71 Aligned_cols=121 Identities=74% Similarity=1.236 Sum_probs=106.0
Q ss_pred EEEEEEEEccC---CCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCC-
Q 003882 382 ILEVGILSAQG---LLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLG- 457 (789)
Q Consensus 382 ~l~v~v~~a~~---L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~- 457 (789)
.|+|+|++|+| |+.+ +..|.+||||+|++|+++.||+++++++||+|||+|.|.+.++...|.|+|||++..+
T Consensus 1 ~L~v~v~~A~~~~~l~~~---d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~ 77 (126)
T cd08379 1 ILEVGILGAQGLDVLRAK---DGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHW 77 (126)
T ss_pred CeEEEEEEeECCcccccc---ccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccc
Confidence 48999999999 6655 5678999999999999999999999999999999999999988889999999998751
Q ss_pred CCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEE
Q 003882 458 GSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQL 505 (789)
Q Consensus 458 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l 505 (789)
++...+|++||++.|+|+++..+.....||+|...++.+.++.|+|++
T Consensus 78 ~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 78 KEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 011137899999999999999999999999999887777778899975
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-21 Score=181.88 Aligned_cols=149 Identities=62% Similarity=1.049 Sum_probs=127.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCeEEEEEECCeEEeeecccCCCCCCccCceeEEEeeCCCCCeEEEEEEEccCCCCCCceE
Q 003882 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLG 298 (789)
Q Consensus 219 L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~~iG 298 (789)
|+|+|++|++|+..+.+|.+||||++.++++.++|+++.+++.||.|||.|.|.+.++..+.+.|+|+|++..+++++||
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG 81 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG 81 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence 78999999999999999999999999999999999998754699999999999998777789999999999888899999
Q ss_pred EEEEeccccccccCCCCCcceeEEccccCcccchhcccccccccceEEEEEEEcCcccccCCcccccCCCCc
Q 003882 299 RLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQRP 370 (789)
Q Consensus 299 ~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~ 370 (789)
++.++|+++....+.+....+||+|.+.+.. .+ .++..+..|+|++++++.+.+++++++.+|++|++|
T Consensus 82 ~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~-~~--~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 82 RAVIPLNDIERRVDDRPVPSRWFSLERPGGA-ME--QKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred EEEEEHHHCcccCCCCccCCceEECcCCCCc-cc--ccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 9999999987543345567899999986310 00 123345689999999999999999999999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-21 Score=207.83 Aligned_cols=249 Identities=19% Similarity=0.319 Sum_probs=195.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCeEEEEEECC-eEEeeecccCCCCCCccCceeEEEeeCCCCCeEEEEEEEccCCCCCCc
Q 003882 218 YLRVNVIEAQDVEPLDKSQLPQAFVEAQVGN-QVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEP 296 (789)
Q Consensus 218 ~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~-~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~~ 296 (789)
.|.|.|.+|+||+..+..|..||||.|.+.+ ...||.++.+ ++.|.|.|+|.|.+... -..|.|-|||.| +++|+.
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~-F~~l~fYv~D~d-~~~D~~ 82 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRT-FRYLSFYVWDRD-LKRDDI 82 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcc-eeeEEEEEeccc-cccccc
Confidence 4899999999999999999999999999987 5899999998 99999999999999664 347999999999 999999
Q ss_pred eEEEEEeccccccccCCCCCcceeEEccccCcccchhcccccccccceEEEEEEEcCcccccCCcccccCCCCccccccc
Q 003882 297 LGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLW 376 (789)
Q Consensus 297 iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~ 376 (789)
||.+.|.-.+|.. .+..+.|+.|.+-+ .+.+..|+|++.+.+.+... .
T Consensus 83 IGKvai~re~l~~----~~~~d~W~~L~~VD---------~dsEVQG~v~l~l~~~e~~~---~---------------- 130 (800)
T KOG2059|consen 83 IGKVAIKREDLHM----YPGKDTWFSLQPVD---------PDSEVQGKVHLELALTEAIQ---S---------------- 130 (800)
T ss_pred cceeeeeHHHHhh----CCCCccceeccccC---------CChhhceeEEEEEEeccccC---C----------------
Confidence 9999999888863 23578899999873 56778999999998754321 0
Q ss_pred CCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEE----EeeccccCCCCCccccEEEEEEeCC----------
Q 003882 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKW----VRTRTLVDNFNPKWNEQYTWEVYDP---------- 442 (789)
Q Consensus 377 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~----~~T~~~~~t~~P~wne~~~f~v~~~---------- 442 (789)
.-+...++.++++.+.+ ++.+||||++...+.. .+|+++++|.+|.|+|.|.|.+...
T Consensus 131 ----~~~~c~~L~~r~~~P~~----~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~ 202 (800)
T KOG2059|consen 131 ----SGLVCHVLKTRQGLPII----NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFM 202 (800)
T ss_pred ----CcchhhhhhhcccCcee----CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcC
Confidence 02223334445555432 3569999999986554 5999999999999999999988643
Q ss_pred ------CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCC----ccceEEEEEEEEeec
Q 003882 443 ------CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGV----KKMGELQLAVRFTCL 512 (789)
Q Consensus 443 ------~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~----~~~G~i~l~~~f~~~ 512 (789)
...|.+.+|++.... ..++|+|.+.+++..+........||-|....++.. ..-|.+.+.+.|...
T Consensus 203 ~~~e~~~l~irv~lW~~~~~~----~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D 278 (800)
T KOG2059|consen 203 PEEEDDMLEIRVDLWNDLNLV----INDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTED 278 (800)
T ss_pred cccCCceeeEEEeeccchhhh----hhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeec
Confidence 237888999844332 258999999999999987777899999975532111 125889999888755
Q ss_pred C
Q 003882 513 S 513 (789)
Q Consensus 513 ~ 513 (789)
.
T Consensus 279 ~ 279 (800)
T KOG2059|consen 279 H 279 (800)
T ss_pred e
Confidence 3
|
|
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-21 Score=168.88 Aligned_cols=111 Identities=16% Similarity=0.298 Sum_probs=97.1
Q ss_pred cccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC----eeeeeccccCCCCCeeccEEEEEcc--CCC
Q 003882 40 SERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN----YKGKTRHFEKKSNPEWKQVFAFSKE--KIQ 113 (789)
Q Consensus 40 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~----~~~~T~~~~~t~nP~wne~f~f~~~--~~~ 113 (789)
...+++.|+... +.|.|+|++|+||+ . .|.+||||+|++.+ .+++|+++++|+||+|||+|.|++. +..
T Consensus 2 ~l~fsL~Y~~~~--~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~ 76 (118)
T cd08677 2 KLHYSLSYDKQK--AELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESL 76 (118)
T ss_pred eEEEEEEEcCcC--CEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhC
Confidence 467999999988 99999999999999 3 46699999999975 4679999999999999999999984 456
Q ss_pred CceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEc
Q 003882 114 SSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160 (789)
Q Consensus 114 ~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 160 (789)
...|.|+|||+|+++++++||++.+++.++......+ +|..|
T Consensus 77 ~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~-----~W~~~ 118 (118)
T cd08677 77 DGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAA-----QWVDL 118 (118)
T ss_pred CcEEEEEEEeCCCCCCCceEEEEEEccccccCCcccc-----chhcC
Confidence 7899999999999999999999999999987665544 77654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=173.28 Aligned_cols=119 Identities=29% Similarity=0.501 Sum_probs=102.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccC-----CCCceEEEEEEeCCCCCCC
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEK-----IQSSVLEVFVRDREIVGRD 130 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~-----~~~~~l~v~V~d~~~~~~d 130 (789)
++|+|++|+||+..+..|.+||||+|.+++++++|+++++|.||+|||+|.|.+.. .....|.|+|||++.+++|
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d 80 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD 80 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence 47999999999999989999999999999999999999999999999999999866 3568999999999999899
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCC-CccceEEEEEE
Q 003882 131 DYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDD-RKVKGEVMLAV 177 (789)
Q Consensus 131 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~ 177 (789)
++||++.|+|.++...... ....||+|.+..+. .+..|+|++++
T Consensus 81 ~~iG~~~i~l~~l~~~~~~---~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 81 KFLGQVSIPLNDLDEDKGR---RRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred ceeEEEEEEHHHhhccCCC---cccEEEECcCCCCCCccccceEEEEe
Confidence 9999999999998732211 13399999876542 34689999876
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=170.61 Aligned_cols=120 Identities=68% Similarity=1.189 Sum_probs=106.9
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeE
Q 003882 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIG 134 (789)
Q Consensus 55 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG 134 (789)
.|.|+|++|+||+.. .+||||++.+++++.+|+++++|.||+|||+|.|.+..+....|.++|||++.. ++++||
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG 75 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLG 75 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceee
Confidence 389999999999887 789999999999999999999999999999999998876678999999999987 799999
Q ss_pred EEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 135 KVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 135 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
++.++++++......++...+.||+|++..+ .+..|+|++++||+
T Consensus 76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~~ 120 (121)
T cd08378 76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWFG 120 (121)
T ss_pred eEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEec
Confidence 9999999998765444445669999998876 47889999999986
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=171.06 Aligned_cols=112 Identities=26% Similarity=0.481 Sum_probs=99.9
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEc---c
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSK---E 110 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~---~ 110 (789)
|..+++++|+ . +.|.|+|++|+||+..+ .+.+||||+|++.+ .++||++++++.||+|||+|.|.+ .
T Consensus 2 G~l~~~l~y~--~--~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~ 76 (122)
T cd08381 2 GQVKLSISYK--N--GTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVE 76 (122)
T ss_pred CeEEEEEEEe--C--CEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChH
Confidence 3678999999 3 78999999999999999 89999999999974 367999999999999999999986 3
Q ss_pred CCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEc
Q 003882 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160 (789)
Q Consensus 111 ~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 160 (789)
++....|+|+|||++.++++++||++.|+|+++..+...+ .||+|
T Consensus 77 ~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~-----~W~~L 121 (122)
T cd08381 77 DLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETE-----KWYPL 121 (122)
T ss_pred HhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCcc-----ceEEC
Confidence 4457899999999999999999999999999999775444 89987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-20 Score=171.93 Aligned_cols=117 Identities=28% Similarity=0.424 Sum_probs=101.4
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeC------CCceEEEEEEeCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYD------PCTVITLGVFDNCHL 456 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~------~~~~l~v~v~d~~~~ 456 (789)
++|+|++|+||+.++ ..|.+||||+|+++++++||+++++++||+|||.|.|.+.. ....|.|+|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d---~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCKG---KSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCCC---CCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 579999999999874 45789999999999999999999999999999999999976 367999999999987
Q ss_pred CCCCCCCCCccEEEEEECcccc--cCceEeeeEeeeecCCCCCccceEEEEEE
Q 003882 457 GGSGTKPDSRIGKVRIRLSTLE--ADRIYTHSYPLLVLNPSGVKKMGELQLAV 507 (789)
Q Consensus 457 ~~~~~~~d~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 507 (789)
+ +|++||++.|+|+++. .+.....||+|........+..|+|+|++
T Consensus 78 ~-----~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 78 G-----LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred C-----CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEe
Confidence 5 7899999999999988 56677899999865433344579999976
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-20 Score=169.95 Aligned_cols=121 Identities=32% Similarity=0.465 Sum_probs=105.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCC---CCceEEEEEEeCCCCC-CCc
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKI---QSSVLEVFVRDREIVG-RDD 131 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~---~~~~l~v~V~d~~~~~-~d~ 131 (789)
|.|+|++|++|+..+..|.+||||+|.+++++++|++++++.||+|||+|.|.+... ....|.|+|||++.++ +++
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~ 81 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRS 81 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCC
Confidence 899999999999999889999999999999999999999999999999999998653 2468999999999886 899
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 132 YIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 132 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
+||++.++++++.... .....||+|+.+...++..|+|.+++++.
T Consensus 82 ~lG~v~i~l~~l~~~~----~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 82 FLGRVRISGTSFVPPS----EAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred eeeEEEEcHHHcCCCC----CccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 9999999999998321 12349999997654446799999999874
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-20 Score=170.61 Aligned_cols=120 Identities=23% Similarity=0.248 Sum_probs=103.4
Q ss_pred CccccccceeeecccCceeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEc
Q 003882 36 GWISSERATSTYDLVEQMFYLYVRVEKARDLPTNP-VSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSK 109 (789)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~ 109 (789)
...|..++++.|+ . +.|.|+|++|+||+..+ ..|.+||||++++.+ .++||+++++|+||+|||+|.|.+
T Consensus 15 ~~~G~l~lsl~y~--~--~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v 90 (146)
T cd04028 15 PSMGDIQLGLYDK--K--GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDV 90 (146)
T ss_pred CCcceEEEEEEeC--C--CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEE
Confidence 3467789999994 3 78999999999999864 568899999999965 267999999999999999999999
Q ss_pred cCCCCceEEEEEE-eCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC
Q 003882 110 EKIQSSVLEVFVR-DREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165 (789)
Q Consensus 110 ~~~~~~~l~v~V~-d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 165 (789)
. +....|.|+|| |++.++++++||++.|+|.++..+.... .||+|.+...
T Consensus 91 ~-l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~-----~Wy~L~~~~~ 141 (146)
T cd04028 91 S-PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVI-----GWYKLFPTSS 141 (146)
T ss_pred c-CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCce-----eEEecCCccc
Confidence 8 56789999999 6888889999999999999997765444 8999997653
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-20 Score=169.31 Aligned_cols=116 Identities=28% Similarity=0.399 Sum_probs=102.7
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEcc--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVS-GSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKE-- 110 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~-- 110 (789)
|..++++.|+... +.|.|+|++|+||+.++.. |.+||||+|++.+ .++||+++++|.||+|||+|.|.+.
T Consensus 2 G~i~~sl~y~~~~--~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~ 79 (125)
T cd08393 2 GSVQFALDYDPKL--RELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVERE 79 (125)
T ss_pred cEEEEEEEEECCC--CEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHH
Confidence 4679999999987 8999999999999999875 8999999999964 3579999999999999999999985
Q ss_pred CCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcc
Q 003882 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161 (789)
Q Consensus 111 ~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 161 (789)
+.....|.|+|||++.++++++||++.|+|.++..+.... .||+|+
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~-----~W~~L~ 125 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQP-----TWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCc-----ceEECc
Confidence 3456799999999999999999999999999998775444 899985
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-20 Score=202.49 Aligned_cols=216 Identities=21% Similarity=0.350 Sum_probs=162.7
Q ss_pred hccCCCccccchhhHHHHHHH-HHHHHhHHHHHHHhcccccccCchhhHHHHHHHHHHHHhcchhHHHHHHHHHHHHh--
Q 003882 570 MLDVDSHMWSMRRSKANFFRI-VSLFSGAISMSKWLGEVRYWKNPVTTILVHVLFLILICYPELILPTIFLYMFLIGI-- 646 (789)
Q Consensus 570 ~~~~~~~~~s~~~~~~n~~rl-~~~~~~~~~~~~~i~~l~~W~~p~~t~~~~~~~~~~~~~~~l~~p~~~l~l~~~~~-- 646 (789)
|.-+++++||..+|++|++|| ..++-.+.++.++|.+|++|++|++|++++++|++ +|+.++++|+++..++.+++
T Consensus 80 Ln~a~~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~-aW~~dll~p~~~~~L~~li~~P 158 (642)
T PF11696_consen 80 LNIAEDEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFI-AWLLDLLVPAFFAFLIALILSP 158 (642)
T ss_pred ccccccccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCc
Confidence 444789999999999999999 55888999999999999999999999996665554 99999999999987776666
Q ss_pred --hccccCCCCCCCCCccc------------CCCCC-------------------------------------CCCCCC-
Q 003882 647 --WNYRFRPRHPPHMDTKL------------SWADA-------------------------------------VHPDEL- 674 (789)
Q Consensus 647 --~~~~~~~~~~~~~~~~~------------s~~~~-------------------------------------~~~~~~- 674 (789)
+.++|+|.+++.+|... |.++. ..+++.
T Consensus 159 ~~r~~lFPpap~alvd~~tgg~qkP~aGvLgs~dS~TGAPE~~KGEAvEqEAsNfV~siasvav~saaGK~~q~~p~~~~ 238 (642)
T PF11696_consen 159 PARSILFPPAPPALVDSKTGGVQKPKAGVLGSDDSVTGAPENHKGEAVEQEASNFVNSIASVAVSSAAGKHPQGDPDDDP 238 (642)
T ss_pred ccccccCCCCCcccccCCCCCccccccccccccccccCCCccccchHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccCC
Confidence 78889998887666422 11110 001111
Q ss_pred CCCCCCCC--------------------CCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccccCCch------
Q 003882 675 DEEFDTFP--------------------TSKQQDVVRMRYDRLRSVAGRIQTVVGDMATQGERFQALLSWRDPR------ 728 (789)
Q Consensus 675 ~~e~~~~~--------------------~~~~~~~~~~~~~~l~~~~~~vq~~l~~~a~~~e~~~~l~~w~~p~------ 728 (789)
+++..+++ ..+++++..|+ .++++.+..+|++|++++|++||+-|+|+.+.||
T Consensus 239 ~~~~~pd~~~v~~~~adak~~a~g~~~~~~~DkTk~Pm~-~~v~~~~~p~mh~l~di~Dt~ERfaNaLSPTpPFp~~~~R 317 (642)
T PF11696_consen 239 EEDSEPDPTDVATKAADAKDKAAGEKPKPSHDKTKQPMK-EAVWKKMRPIMHMLGDITDTWERFANALSPTPPFPRHTPR 317 (642)
T ss_pred ccCCCCChhhhhHhhhhhhhhccCCCCCCccchhhchHH-HHHHHhhhhHHHHHhhHHHHHHHHhhccCCCCCCCCccHH
Confidence 11111111 12234555555 6788899999999999999999999999999999
Q ss_pred --hhHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhccCCccc-------CCCCCchh------hhhhcCCCCcCC
Q 003882 729 --ATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFR-------SKLPSIPS------NFFRRLPSRADT 787 (789)
Q Consensus 729 --~t~~~~~~l~~~~~~~~~iP~r~i~l~~g~~~~~~P~~r-------~~~p~~~~------~~~~rlPs~~~~ 787 (789)
+..+++.+++++.++..++-.|.+.|++|+.||+.|.++ +++|+--. ..|+.|||++.+
T Consensus 318 lRLa~~l~p~~l~Sl~~ssy~~~K~~tF~~Gf~FFGdPiI~r~~~~Lnr~~P~W~k~leLrntlLkGVPTNAQL 391 (642)
T PF11696_consen 318 LRLAAILAPLLLASLFVSSYMFVKGTTFGFGFGFFGDPIITRGIDYLNRKYPNWQKLLELRNTLLKGVPTNAQL 391 (642)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHhccCCchHHH
Confidence 456777778888888888999999999999999999865 33444322 357888988764
|
|
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.8e-20 Score=166.39 Aligned_cols=119 Identities=27% Similarity=0.449 Sum_probs=107.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCcee
Q 003882 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYI 133 (789)
Q Consensus 55 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~l 133 (789)
+|+|+|++|++|+..+..|.+||||++.+++ ..++|+++.+|.||+|||+|.|.+.+. ...|.|+|||++..+++++|
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~~~~i 79 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLTDDFM 79 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCCCcce
Confidence 5899999999999999889999999999988 578999999999999999999998765 47899999999999999999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 134 GKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 134 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
|.+.+++.++..+...+ .|++|.+..+. +..|+|.+.+.+.
T Consensus 80 G~~~~~l~~l~~~~~~~-----~~~~L~~~~~~-~~~G~l~l~~~~~ 120 (121)
T cd04042 80 GSAFVDLSTLELNKPTE-----VKLKLEDPNSD-EDLGYISLVVTLT 120 (121)
T ss_pred EEEEEEHHHcCCCCCeE-----EEEECCCCCCc-cCceEEEEEEEEC
Confidence 99999999999877666 89999887653 5789999999874
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.1e-20 Score=165.72 Aligned_cols=114 Identities=28% Similarity=0.305 Sum_probs=100.4
Q ss_pred EEEEEEEeeC---CCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCC----
Q 003882 56 LYVRVEKARD---LPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVG---- 128 (789)
Q Consensus 56 L~V~v~~a~~---L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~---- 128 (789)
|.|+|++|+| |..+|..|++||||++++++++.||+++++++||+|||+|.|.+.+.. ..|.|+|||++.++
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~-~~l~v~V~d~d~~~~~~~ 80 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPC-TVLTVGVFDNSQSHWKEA 80 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCC-CEEEEEEEECCCcccccc
Confidence 8899999999 888999999999999999999999999999999999999999997764 68999999999873
Q ss_pred --CCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCC-CccceEEEE
Q 003882 129 --RDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDD-RKVKGEVML 175 (789)
Q Consensus 129 --~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l 175 (789)
+|++||++.++|+.+..+...+ .||+|+..++. .+..|+|..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~~~~-----~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 81 VQPDVLIGKVRIRLSTLEDDRVYA-----HSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCCCceEEEEEEEHHHccCCCEEe-----eEEEeEeCCCCCccCCcEEEe
Confidence 8999999999999999876555 89999976533 245677754
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.7e-20 Score=173.36 Aligned_cols=123 Identities=25% Similarity=0.328 Sum_probs=108.4
Q ss_pred cEEEEEEEEccCCCCCccC---------------------------CCCCCcCcEEEEEECCEE-EeeccccCCCCCccc
Q 003882 381 GILEVGILSAQGLLPMKTR---------------------------DGRGTTDAYCVAKYGLKW-VRTRTLVDNFNPKWN 432 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~---------------------------~~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wn 432 (789)
|.|.|+|++|++|++||.. ...|.+||||+|.+++.. .||++++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 8999999999999998731 246779999999998755 799999999999999
Q ss_pred cEEEEEEeCCCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 433 EQYTWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 433 e~~~f~v~~~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
|.|.|.+.++.+.|.|+|+|+|.+ .+++||++.|+++++..+...+.||+|.....++.+..|+|+|+++|
T Consensus 87 E~F~~~~~~~~~~l~~~V~d~d~~------~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 87 ESFHIYCAHYASHVEFTVKDNDVV------GAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred eEEEEEccCCCCEEEEEEEeCCCc------CCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence 999999988888999999999986 46899999999999999888899999987655556667999999987
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-20 Score=169.87 Aligned_cols=116 Identities=29% Similarity=0.505 Sum_probs=97.7
Q ss_pred CccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCC
Q 003882 379 PIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGG 458 (789)
Q Consensus 379 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~ 458 (789)
..|.|+|.|++|.||...|. .+++||||++.+|+++.||+++++++||+|||.|+|.|.+++..|+++|||+|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~---~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs- 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDF---LGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS- 79 (168)
T ss_pred cceEEEEEEEeecCeeeecc---ccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC-
Confidence 36999999999999998754 47999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEE
Q 003882 459 SGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLA 506 (789)
Q Consensus 459 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~ 506 (789)
.||+||.+.|+|..+...+ ..++ |......|... |++.++
T Consensus 80 ----~dD~mG~A~I~l~p~~~~~--~~~~-l~~~~~~gt~~-~~v~~s 119 (168)
T KOG1030|consen 80 ----SDDFMGEATIPLKPLLEAQ--KMDY-LKLELLTGTAI-GKVLLS 119 (168)
T ss_pred ----cccccceeeeccHHHHHHh--hhhc-cccccCCCcEe-eEEEec
Confidence 9999999999999998766 3344 43333333332 545443
|
|
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.3e-20 Score=167.37 Aligned_cols=119 Identities=22% Similarity=0.336 Sum_probs=103.3
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC-
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVS-GSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK- 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~- 111 (789)
|..++++.|+... +.|.|+|++|+||+.++.. |.+||||++++.+ .++||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sl~Y~~~~--~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~ 79 (128)
T cd08392 2 GEIEFALHYNFRT--SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEAD 79 (128)
T ss_pred cEEEEEEEEeCCC--CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHH
Confidence 5689999999988 9999999999999999864 8999999999975 36799999999999999999999844
Q ss_pred -CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcc
Q 003882 112 -IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161 (789)
Q Consensus 112 -~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 161 (789)
+....|.|.|||++.++++++||++.|+|+++...... ...+.||+|.
T Consensus 80 ~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~--~~~~~W~~l~ 128 (128)
T cd08392 80 LLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTD--SQRFLWYPLN 128 (128)
T ss_pred HhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCC--ccccceEECc
Confidence 34679999999999999999999999999999776432 2345899984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-19 Score=164.54 Aligned_cols=120 Identities=28% Similarity=0.393 Sum_probs=106.1
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-KWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSG 460 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 460 (789)
.|+|+|++|+||+..+ ..|.+||||++.+++ +.++|++++++.||.|||.|.|.+.++...|.|+|||++..+
T Consensus 1 ~L~v~v~~a~~L~~~d---~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~--- 74 (121)
T cd04042 1 QLDIHLKEGRNLAARD---RGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL--- 74 (121)
T ss_pred CeEEEEEEeeCCCCcC---CCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC---
Confidence 3789999999999874 357899999999987 579999999999999999999999887889999999999976
Q ss_pred CCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEee
Q 003882 461 TKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTC 511 (789)
Q Consensus 461 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 511 (789)
+|++||++.++++++..+...+.|++|.+.. +.+..|+|+|.+.|.|
T Consensus 75 --~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 --TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN--SDEDLGYISLVVTLTP 121 (121)
T ss_pred --CCcceEEEEEEHHHcCCCCCeEEEEECCCCC--CccCceEEEEEEEECC
Confidence 8899999999999999888889999997542 3456799999998864
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-19 Score=168.56 Aligned_cols=126 Identities=28% Similarity=0.480 Sum_probs=108.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccC-CCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCcee
Q 003882 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEK-KSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYI 133 (789)
Q Consensus 55 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~-t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~l 133 (789)
.|.|+|++|+||+..+..|.+||||+|+++++..+|+++.+ |.||+|||+|.|.+.++....|.|+|+|++..++|++|
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l 80 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL 80 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence 38999999999999999999999999999999999999977 69999999999999776667999999999998899999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeeEEcccCCC------CCccceEEEEEEEEee
Q 003882 134 GKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD------DRKVKGEVMLAVWIGT 181 (789)
Q Consensus 134 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~------~~~~~G~l~l~~~~~~ 181 (789)
|++.++|.++..+.. ......+||+|++..+ ..+..|+|++.+.+..
T Consensus 81 G~v~i~L~~l~~~~~-~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 81 GRAVIPLNDIERRVD-DRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred EEEEEEHHHCcccCC-CCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 999999999876421 1233459999998764 1256799999999864
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.6e-20 Score=166.01 Aligned_cols=116 Identities=21% Similarity=0.321 Sum_probs=102.4
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCC-CCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC-
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPV-SGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK- 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~-~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~- 111 (789)
|..++++.|+... +.|.|+|++|+||+..+. .|.+||||+|++.+ .++||++++++.||+|||+|.|.+..
T Consensus 2 G~i~~sl~y~~~~--~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 79 (125)
T cd04029 2 GEILFSLSYDYKT--QSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHS 79 (125)
T ss_pred cEEEEEEEEECCC--CeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHH
Confidence 5679999998877 999999999999998865 47899999999964 35799999999999999999999854
Q ss_pred -CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcc
Q 003882 112 -IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161 (789)
Q Consensus 112 -~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 161 (789)
+....|.|+|||++.++++++||++.++|.++......+ .||+|+
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~-----~w~~l~ 125 (125)
T cd04029 80 QLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHE-----ECLPLH 125 (125)
T ss_pred HhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcc-----cEEECc
Confidence 346789999999999999999999999999999886655 999984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=164.13 Aligned_cols=117 Identities=29% Similarity=0.434 Sum_probs=102.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccC-CCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEK-KSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~-t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
|.|.|+|++|+||+..+..+.+||||+|.+++++++|+++.+ +.||+|||+|.|.+.....+.|.|+|||++..+ +++
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~ 79 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL 79 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence 579999999999999998999999999999999999998765 789999999999997765689999999999875 999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 133 IGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 133 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
||++.+++.++..+...+ .||+|.... +..|+|.++++|
T Consensus 80 iG~~~~~l~~~~~~~~~~-----~w~~L~~~~---~~~G~i~l~l~f 118 (118)
T cd08681 80 IGDTEVDLSPALKEGEFD-----DWYELTLKG---RYAGEVYLELTF 118 (118)
T ss_pred eEEEEEecHHHhhcCCCC-----CcEEeccCC---cEeeEEEEEEEC
Confidence 999999999987764444 999998643 468999999865
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.7e-20 Score=166.66 Aligned_cols=96 Identities=32% Similarity=0.534 Sum_probs=90.9
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCc
Q 003882 52 QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDD 131 (789)
Q Consensus 52 ~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~ 131 (789)
..|.|+|+|++|.||..+|..+++||||.+.+++|+.||+++.+++||+|||.|.|.+.++ ...|.++|||+|.+++||
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D~fs~dD 82 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKDTFSSDD 82 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCCCCCccc
Confidence 3489999999999999999879999999999999999999999999999999999999998 589999999999999999
Q ss_pred eeEEEEEEccccCCCCC
Q 003882 132 YIGKVVFDMNEVPTRVP 148 (789)
Q Consensus 132 ~lG~~~i~l~~l~~~~~ 148 (789)
|||.|+|+|..+.....
T Consensus 83 ~mG~A~I~l~p~~~~~~ 99 (168)
T KOG1030|consen 83 FMGEATIPLKPLLEAQK 99 (168)
T ss_pred ccceeeeccHHHHHHhh
Confidence 99999999999988754
|
|
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-19 Score=164.43 Aligned_cols=123 Identities=24% Similarity=0.432 Sum_probs=105.3
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCc
Q 003882 52 QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDD 131 (789)
Q Consensus 52 ~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~ 131 (789)
.+|.|.|+|++|++|+..+..|.+||||++.++.+.++|+++++|.||.|||+|.|.+.+.....|.|+|||++.+++|+
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~d~ 92 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSPDD 92 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCCCC
Confidence 45899999999999999998999999999999999999999999999999999999998776789999999999999999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 132 YIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 132 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
+||++.+++.++.............|..+.. ...|+|++++.+
T Consensus 93 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~-----~~~g~i~l~~~~ 135 (136)
T cd08375 93 FLGRTEIRVADILKETKESKGPITKRLLLHE-----VPTGEVVVKLDL 135 (136)
T ss_pred eeEEEEEEHHHhccccccCCCcEEEEecccc-----ccceeEEEEEEe
Confidence 9999999999998743322223335566532 357999999876
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.4e-19 Score=159.71 Aligned_cols=115 Identities=29% Similarity=0.504 Sum_probs=103.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeE
Q 003882 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIG 134 (789)
Q Consensus 55 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG 134 (789)
.|+|+|++|+||+..+..+.+||||++++++++++|+++++|.||.|||+|.|.+.+.....|.|+|||++.++++++||
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG 80 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG 80 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence 37899999999999998899999999999999999999999999999999999997766789999999999998999999
Q ss_pred EEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 135 KVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 135 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
++.++|.++..+...+ .|++|++. .|+|.+.+.|.
T Consensus 81 ~~~~~l~~l~~~~~~~-----~w~~L~~~------~G~~~~~~~~~ 115 (116)
T cd08376 81 RCEIDLSALPREQTHS-----LELELEDG------EGSLLLLLTLT 115 (116)
T ss_pred EEEEeHHHCCCCCceE-----EEEEccCC------CcEEEEEEEec
Confidence 9999999999876555 99999864 48888887653
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-19 Score=160.01 Aligned_cols=117 Identities=26% Similarity=0.453 Sum_probs=102.2
Q ss_pred EEEEEEEeeCCCCCC-CCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCcee
Q 003882 56 LYVRVEKARDLPTNP-VSGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYI 133 (789)
Q Consensus 56 L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~l 133 (789)
|.|+|++|+||+..+ ..|.+||||+|.++++ .++|+++++|.||+|||+|.|.+.+. ...|.|.|||++.++++++|
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~~~~~i 80 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLRRDSVI 80 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCCCCceE
Confidence 789999999999874 4578999999999875 57999999999999999999999764 47999999999999999999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEE
Q 003882 134 GKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVW 178 (789)
Q Consensus 134 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 178 (789)
|.+.++++++..+...+ .||+|+.....++..|+|++++.
T Consensus 81 G~~~i~l~~l~~~~~~~-----~w~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd08401 81 GKVAIKKEDLHKYYGKD-----TWFPLQPVDADSEVQGKVHLELR 120 (121)
T ss_pred EEEEEEHHHccCCCCcE-----eeEEEEccCCCCcccEEEEEEEE
Confidence 99999999999765544 89999976544457899999875
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-19 Score=160.24 Aligned_cols=119 Identities=24% Similarity=0.383 Sum_probs=102.6
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGT 461 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~ 461 (789)
|.|.|++|+||++++. ..|.+||||.|.++++ .++|+++++|+||+|||+|.|.+.+....|.|.|||++.++
T Consensus 2 l~v~v~~a~~L~~~~~--~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~---- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSG--PNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR---- 75 (121)
T ss_pred eEEEEEEccCCCCCCC--CCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC----
Confidence 6799999999998743 2568999999999775 68999999999999999999999876689999999999876
Q ss_pred CCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 462 KPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 462 ~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
+|++||++.++++++..++..+.||+|......+. ..|+|+|+++|
T Consensus 76 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~ 121 (121)
T cd08401 76 -RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE-VQGKVHLELRL 121 (121)
T ss_pred -CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCc-ccEEEEEEEEC
Confidence 88999999999999998888899999975433232 47999999864
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-19 Score=195.56 Aligned_cols=181 Identities=24% Similarity=0.333 Sum_probs=156.1
Q ss_pred ccchhhHHHHHHHHHHHHhHHHHHHHhcccccccCchhhHHHHHHHHHHHHhcch--hHHHHHHHHHHHHhhcccc-CCC
Q 003882 578 WSMRRSKANFFRIVSLFSGAISMSKWLGEVRYWKNPVTTILVHVLFLILICYPEL--ILPTIFLYMFLIGIWNYRF-RPR 654 (789)
Q Consensus 578 ~s~~~~~~n~~rl~~~~~~~~~~~~~i~~l~~W~~p~~t~~~~~~~~~~~~~~~l--~~p~~~l~l~~~~~~~~~~-~~~ 654 (789)
....-+-+|+..|++++.|+..++.+++.|.+|++|.+|+.+++++++++|..|+ ++|+++++++++|++.+.. +.
T Consensus 480 vkveGI~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~- 558 (683)
T PF04842_consen 480 VKVEGIDTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRL- 558 (683)
T ss_pred HhhcCCccHHHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-
Confidence 3444556899999999999999999999999999999999999999999999886 8999999999999986654 22
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccccCCchhhHHHH
Q 003882 655 HPPHMDTKLSWADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMATQGERFQALLSWRDPRATSLFV 734 (789)
Q Consensus 655 ~~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vq~~l~~~a~~~e~~~~l~~w~~p~~t~~~~ 734 (789)
+..-++... ..+|+.+..+++.++|+.+.+++++|++++.++.|+|.++.|..|++|..++
T Consensus 559 -----------------g~~~~~v~V--~~pP~~nTvEqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va 619 (683)
T PF04842_consen 559 -----------------GKSFGEVTV--RDPPPKNTVEQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVA 619 (683)
T ss_pred -----------------CCccceEEe--cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHH
Confidence 222223222 3445677799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhHHHHhhhhhh-hccCCcccCCCCCchhhhhhcC
Q 003882 735 IFCLIAAVVLYVTPFKIITLVAGLF-WLRHPRFRSKLPSIPSNFFRRL 781 (789)
Q Consensus 735 ~~l~~~~~~~~~iP~r~i~l~~g~~-~~~~P~~r~~~p~~~~~~~~rl 781 (789)
++++++++++.++|+||++++..+. |+|+..+|+. +.++|.|||
T Consensus 620 ~~Ll~~A~~LavvP~kyil~~v~l~~FTre~~~Rr~---s~er~~RRl 664 (683)
T PF04842_consen 620 LALLGLAAVLAVVPFKYILLFVFLEVFTRESPFRRE---SSERFNRRL 664 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchh---hHHHHHHHH
Confidence 9999999999999999999998888 8999889986 666666654
|
|
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.80 E-value=5e-19 Score=161.89 Aligned_cols=116 Identities=28% Similarity=0.448 Sum_probs=103.3
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEccC--CC
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFSKEK--IQ 113 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~~~~--~~ 113 (789)
|..++++.|+... +.|.|+|++|+||+..+..|.+||||+|++.+ ..++|++++++.||+|||+|.|.+.. ..
T Consensus 3 G~l~~sl~y~~~~--~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~ 80 (124)
T cd08387 3 GELHFSLEYDKDM--GILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELP 80 (124)
T ss_pred CEEEEEEEECCCC--CEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhC
Confidence 4678999999876 99999999999999999899999999999953 46899999999999999999999754 33
Q ss_pred CceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcc
Q 003882 114 SSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161 (789)
Q Consensus 114 ~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 161 (789)
...|.|+|||++.++++++||++.++++++..+...+ .||+|+
T Consensus 81 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~-----~W~~l~ 123 (124)
T cd08387 81 KRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLD-----LWRKIQ 123 (124)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcc-----eEEECc
Confidence 5789999999999999999999999999999776555 899986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.6e-19 Score=161.63 Aligned_cols=116 Identities=28% Similarity=0.394 Sum_probs=103.2
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEccC--CC
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFSKEK--IQ 113 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~~~~--~~ 113 (789)
|..+++++|+... +.|.|+|++|+||+..+..+.+||||++++.+ ..++|++++++.||+|||+|.|.+.. ..
T Consensus 3 G~l~~~l~y~~~~--~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~ 80 (124)
T cd08385 3 GKLQFSLDYDFQS--NQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELG 80 (124)
T ss_pred cEEEEEEEEeCCC--CEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhC
Confidence 5678999999988 89999999999999999889999999999965 35799999999999999999999854 34
Q ss_pred CceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcc
Q 003882 114 SSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161 (789)
Q Consensus 114 ~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 161 (789)
...|.|+|||++.++++++||++.+++.++..+...+ +|++|+
T Consensus 81 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~-----~W~~l~ 123 (124)
T cd08385 81 NKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTE-----EWRDLE 123 (124)
T ss_pred CCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcc-----eEEEcc
Confidence 5789999999999999999999999999998765544 999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-19 Score=160.22 Aligned_cols=114 Identities=21% Similarity=0.349 Sum_probs=100.4
Q ss_pred ccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eeeeeccccCCCCCeeccEEEEEcc--CC
Q 003882 41 ERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN------YKGKTRHFEKKSNPEWKQVFAFSKE--KI 112 (789)
Q Consensus 41 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~------~~~~T~~~~~t~nP~wne~f~f~~~--~~ 112 (789)
+++++.|+... +.|.|+|++|+||+..+..|.+||||++++.+ .++||++++++.||+|||+|.|++. ++
T Consensus 3 i~~sL~Y~~~~--~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L 80 (124)
T cd08680 3 VQIGLRYDSGD--SSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKL 80 (124)
T ss_pred EEEEEEECCCC--CEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHh
Confidence 57899999987 99999999999999998888999999999974 2579999999999999999999984 34
Q ss_pred CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEc
Q 003882 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160 (789)
Q Consensus 113 ~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 160 (789)
....|.|.|||++.++++++||++.|+|+++..... ....||+|
T Consensus 81 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~----~~~~Wy~l 124 (124)
T cd08680 81 YQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEE----MSTKWYNL 124 (124)
T ss_pred hcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCc----cccccccC
Confidence 678999999999999999999999999999976642 13489976
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-19 Score=160.00 Aligned_cols=116 Identities=27% Similarity=0.461 Sum_probs=100.8
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccC-CCCCccccEEEEEEeCC-CceEEEEEEeCCCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVD-NFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGG 458 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~ 458 (789)
|.|+|+|++|+||+..+ ..+.+||||+|+++++..+|+++++ +.||.|||.|.|.+..+ ...|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~~---~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKR---KLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCCC---cCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC--
Confidence 68999999999999874 4578999999999999999999865 79999999999999874 67899999998874
Q ss_pred CCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 459 SGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 459 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
.|++||++.++++++..+.....|++|... | +..|+|+|++.|
T Consensus 76 ----~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~---~-~~~G~i~l~l~f 118 (118)
T cd08681 76 ----KPDLIGDTEVDLSPALKEGEFDDWYELTLK---G-RYAGEVYLELTF 118 (118)
T ss_pred ----CCcceEEEEEecHHHhhcCCCCCcEEeccC---C-cEeeEEEEEEEC
Confidence 488999999999999877778999999732 3 357999999875
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=161.87 Aligned_cols=123 Identities=30% Similarity=0.471 Sum_probs=106.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-------eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCC
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-------KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVG 128 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-------~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~ 128 (789)
|+|+|++|+||+..+..|.+||||+|++.+. ..+|+++++|.||.|||+|.|.+... ...|.|+|||++.++
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~~ 80 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRLT 80 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCCC
Confidence 8999999999999998889999999999764 46999999999999999999998654 478999999999999
Q ss_pred CCceeEEEEEEccccCCCCCCC-CCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 129 RDDYIGKVVFDMNEVPTRVPPD-SPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 129 ~d~~lG~~~i~l~~l~~~~~~~-~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
++++||++.+++.++..+.+.+ ......||+|++..+.++..|+|++++.|
T Consensus 81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~ 132 (133)
T cd04033 81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence 9999999999999999764432 23456999999776555789999999876
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-18 Score=156.78 Aligned_cols=118 Identities=30% Similarity=0.571 Sum_probs=106.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCcee
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYI 133 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~l 133 (789)
|.|.|+|++|+||+..+..+.+||||++++++..++|+++++|.||.|||+|.|.+.+. ...|.|+|||++..+++++|
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~~~~~~i 79 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKDKKPEFL 79 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCCCCCcee
Confidence 57999999999999999889999999999999889999999999999999999998765 47999999999998899999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 134 GKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 134 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
|++.+++.++..+. . .||+|.+........|+|.+++.+
T Consensus 80 G~~~~~l~~~~~~~--~-----~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 80 GKVAIPLLSIKNGE--R-----KWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred eEEEEEHHHCCCCC--c-----eEEECcccCCCCceeeEEEEEEEe
Confidence 99999999987543 2 899999876655689999999865
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.3e-19 Score=160.50 Aligned_cols=116 Identities=24% Similarity=0.336 Sum_probs=102.5
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEE-cc--CC
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFS-KE--KI 112 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~-~~--~~ 112 (789)
|..++++.|+... ..|.|+|++|+||+..+.+|.+||||++.+.+ +++||+++++ .||+|||+|.|+ +. ++
T Consensus 3 G~l~~sl~Y~~~~--~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l 79 (124)
T cd08389 3 GDLDVAFEYDPSA--RKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEEL 79 (124)
T ss_pred EEEEEEEEECCCC--CEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHh
Confidence 5689999999988 99999999999999999889999999988864 4679999887 999999999998 53 34
Q ss_pred CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEccc
Q 003882 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLED 162 (789)
Q Consensus 113 ~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 162 (789)
....|.|+|||++.++++++||++.|+|+++..+.... .||+|++
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~-----~w~~L~p 124 (124)
T cd08389 80 NNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETT-----VWLTLEP 124 (124)
T ss_pred ccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCce-----EEEeCCC
Confidence 57899999999999999999999999999998765544 9999974
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.1e-19 Score=157.80 Aligned_cols=102 Identities=25% Similarity=0.384 Sum_probs=89.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------eeeeeccccCCCCCeeccEEEEEccC---CCCceEEEEEEeCC
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN-------YKGKTRHFEKKSNPEWKQVFAFSKEK---IQSSVLEVFVRDRE 125 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-------~~~~T~~~~~t~nP~wne~f~f~~~~---~~~~~l~v~V~d~~ 125 (789)
|+|+|++|+||+..+ .|.+||||+|++.+ ++++|+++.+|+||+|||+|.|.+.. +....|.|.|||++
T Consensus 2 L~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 899999999999888 58999999999832 35689999999999999999999853 34578999999999
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccC
Q 003882 126 IVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR 163 (789)
Q Consensus 126 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 163 (789)
..+++++||++.+++.++..+...+ .|++|+..
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~~~~~~-----~w~~L~~~ 113 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQAGSCA-----CWLPLGRR 113 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcCCCcEE-----EEEECcCc
Confidence 8888999999999999999876554 89999765
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-18 Score=159.93 Aligned_cols=120 Identities=28% Similarity=0.480 Sum_probs=102.7
Q ss_pred CCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCC
Q 003882 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCH 455 (789)
Q Consensus 377 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~ 455 (789)
...+|.|+|+|++|+||+.++ ..|.+||||++.++++.++|++++++.||.|||.|.|.+.++ ...|.|+|||++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d---~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~ 87 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCN---SNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDF 87 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCC---CCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCC
Confidence 456799999999999999874 457899999999999999999999999999999999999875 5689999999998
Q ss_pred CCCCCCCCCCccEEEEEECccccc-----CceEeeeEeeeecCCCCCccceEEEEEEEEe
Q 003882 456 LGGSGTKPDSRIGKVRIRLSTLEA-----DRIYTHSYPLLVLNPSGVKKMGELQLAVRFT 510 (789)
Q Consensus 456 ~~~~~~~~d~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 510 (789)
++ +|++||++.++++++.. ......|.++. + +..|+|+|++.|+
T Consensus 88 ~~-----~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~-~~~g~i~l~~~~~ 136 (136)
T cd08375 88 FS-----PDDFLGRTEIRVADILKETKESKGPITKRLLLH-----E-VPTGEVVVKLDLQ 136 (136)
T ss_pred CC-----CCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----c-ccceeEEEEEEeC
Confidence 75 78999999999999886 33445666663 2 2459999998763
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=158.00 Aligned_cols=119 Identities=24% Similarity=0.427 Sum_probs=101.5
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCC-ceEEEEEEeCCCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYDPC-TVITLGVFDNCHLGG 458 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~-~~l~v~v~d~~~~~~ 458 (789)
..|+|+|++|+||+.. +.+||||+|.+++. ..||++ +++.||.|||.|.|.+..+. ..++|.|||++..+
T Consensus 4 ~~L~V~Vi~A~~L~~~------~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~- 75 (126)
T cd08400 4 RSLQLNVLEAHKLPVK------HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRS- 75 (126)
T ss_pred eEEEEEEEEeeCCCCC------CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCC-
Confidence 4799999999999863 47899999999875 478987 46899999999999876553 58999999999876
Q ss_pred CCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEee
Q 003882 459 SGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTC 511 (789)
Q Consensus 459 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 511 (789)
+|++||++.|+|+++..+...+.||+|......+.+..|+|+|+++|.+
T Consensus 76 ----~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 76 ----KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred ----CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 8999999999999999998889999998654434556799999999875
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=159.96 Aligned_cols=123 Identities=26% Similarity=0.430 Sum_probs=105.9
Q ss_pred eEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCc
Q 003882 54 FYLYVRVEKARDLPTNPV--SGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDD 131 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~--~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~ 131 (789)
|.|.|+|++|+||+..+. .+.+||||+|.+++++++|+++++|.||+|||+|.|.+.......|.|+|||++..++++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~ 80 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD 80 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence 579999999999999887 789999999999999999999999999999999999998766789999999999988999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCC--CccceEEEEEEE
Q 003882 132 YIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDD--RKVKGEVMLAVW 178 (789)
Q Consensus 132 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~--~~~~G~l~l~~~ 178 (789)
+||++.+++.++..... ......||+|++.... ....|+|++++.
T Consensus 81 ~lG~~~i~l~~~~~~~~--~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 81 YLGEFDIALEEVFADGK--TGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred cceEEEEEHHHhhcccc--cCccceeEEccCcccCccccccceEEEEEE
Confidence 99999999999985311 1123499999977432 347899999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-18 Score=156.61 Aligned_cols=119 Identities=18% Similarity=0.350 Sum_probs=101.0
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCc
Q 003882 53 MFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDD 131 (789)
Q Consensus 53 ~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~ 131 (789)
...|.|+|++|+||+.. +.+||||+|.+++. ..+|+++ ++.||.|||+|.|.+.......+.|.|||++..++|+
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~ 78 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS 78 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence 35799999999999874 47899999999885 4688874 6899999999999875554468999999999999999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC-CCccceEEEEEEEEe
Q 003882 132 YIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD-DRKVKGEVMLAVWIG 180 (789)
Q Consensus 132 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~~ 180 (789)
+||++.++|.++..+...+ .||+|++... .....|+|+++++|.
T Consensus 79 ~iG~v~i~l~~l~~~~~~~-----~W~~L~~~~~~~~~~~G~i~l~l~~~ 123 (126)
T cd08400 79 EIAEVTVQLSKLQNGQETD-----EWYPLSSASPLKGGEWGSLRIRARYS 123 (126)
T ss_pred eEEEEEEEHhHccCCCccc-----EeEEcccCCCCCCCcCcEEEEEEEEE
Confidence 9999999999998876555 9999998753 235689999999986
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-18 Score=156.89 Aligned_cols=118 Identities=31% Similarity=0.498 Sum_probs=103.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeE
Q 003882 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIG 134 (789)
Q Consensus 55 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG 134 (789)
.|.|+|++|++|...+..+.+||||+|++++...+|+++++|.||+|||+|.|.+.......|.|+|||++.++++++||
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG 80 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence 38999999999999998889999999999999999999999999999999999997766688999999999999999999
Q ss_pred EEEEEccccCCCCCCCCCCCCeeEEcccCCCC----CccceEEEEEE
Q 003882 135 KVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDD----RKVKGEVMLAV 177 (789)
Q Consensus 135 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~----~~~~G~l~l~~ 177 (789)
++.+++.++......+ .||.|.+.... ....|.|.+.+
T Consensus 81 ~~~~~l~~l~~~~~~~-----~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 81 KVVFSIQTLQQAKQEE-----GWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEHHHcccCCCCC-----CEEECCCCCCCCccccCceEEEEEEe
Confidence 9999999998765444 89999864322 24678888765
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-18 Score=160.02 Aligned_cols=119 Identities=27% Similarity=0.334 Sum_probs=100.7
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEE-cc--C
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVS-GSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFS-KE--K 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~-~~--~ 111 (789)
|..++++.|+... +.|.|+|++|+||+..+.. +.+||||+|.+.+ +++||+++++|.||+|||+|.|. +. +
T Consensus 3 G~l~~~l~y~~~~--~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~ 80 (128)
T cd08388 3 GTLFFSLRYNSEK--KALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQ 80 (128)
T ss_pred eEEEEEEEEECCC--CEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHH
Confidence 4678999999987 9999999999999998875 8999999999964 46799999999999999999994 42 3
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEccc
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLED 162 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 162 (789)
.....|.++|||++.++++++||++.++|+++......+ ...|.+|++
T Consensus 81 ~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~---~~~~~~~~~ 128 (128)
T cd08388 81 LQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGE---LLVSREIQP 128 (128)
T ss_pred hCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCce---EEEEEeccC
Confidence 345689999999999999999999999999998763221 338888763
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=159.91 Aligned_cols=116 Identities=27% Similarity=0.411 Sum_probs=102.2
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK-- 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~-- 111 (789)
|..++++.|+... +.|.|+|++|+||+..+..+.+||||+|++.+ .+++|++++++.||+|||+|.|.+..
T Consensus 3 G~l~~~l~y~~~~--~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 3 GRIQLTIRYSSQR--QKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred eEEEEEEEEeCCC--CEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 4678999999977 99999999999999999889999999999963 56899999999999999999999843
Q ss_pred CCCceEEEEEEeCCCC--CCCceeEEEEEEccccCCCCCCCCCCCCeeEEcc
Q 003882 112 IQSSVLEVFVRDREIV--GRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~--~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 161 (789)
+....|.|.|||++.+ +++++||++.++|.++..+.... .||+|+
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~-----~W~~L~ 127 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFT-----QWYDLT 127 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCcc-----ceEECc
Confidence 3457999999999875 68999999999999997765544 999985
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-18 Score=159.18 Aligned_cols=115 Identities=36% Similarity=0.578 Sum_probs=99.8
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK-- 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~-- 111 (789)
|..++++.|+... ++|.|+|++|+||+..+..+.+||||+|++.+ .+++|+++++|.||+|||+|.|.+..
T Consensus 3 G~l~~~l~~~~~~--~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 80 (125)
T cd04031 3 GRIQIQLWYDKVT--SQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRE 80 (125)
T ss_pred EEEEEEEEEeCCC--CEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHH
Confidence 5678999999988 99999999999999998888999999999975 46799999999999999999998633
Q ss_pred -CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcc
Q 003882 112 -IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161 (789)
Q Consensus 112 -~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 161 (789)
.....|.|+|||++.++++++||++.++|.+...+. . +.||+|+
T Consensus 81 ~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~~-~-----~~W~~L~ 125 (125)
T cd04031 81 TLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLDD-E-----PHWYPLQ 125 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeeEEEEecccccccC-C-----cceEECc
Confidence 245789999999999989999999999999943322 2 2899985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-18 Score=156.53 Aligned_cols=113 Identities=28% Similarity=0.435 Sum_probs=99.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
|.|+|++|++|+..+..+.+||||++++++ ++++|+++++|.||+|||+|.|.+.......|.|+|||++.+ ++++
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~ 80 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH 80 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence 789999999999998888999999999974 578999999999999999999998766567899999999998 8999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 133 IGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 133 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
||++.+++.++..+...+ .|++|.+. ..|+|.+++.+
T Consensus 81 iG~~~~~l~~l~~g~~~~-----~~~~L~~~-----~~g~l~~~~~~ 117 (119)
T cd04036 81 LGTVLFDVSKLKLGEKVR-----VTFSLNPQ-----GKEELEVEFLL 117 (119)
T ss_pred cEEEEEEHHHCCCCCcEE-----EEEECCCC-----CCceEEEEEEe
Confidence 999999999998876555 89999875 26888888765
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-19 Score=198.80 Aligned_cols=405 Identities=17% Similarity=0.174 Sum_probs=257.3
Q ss_pred cceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccC---------C
Q 003882 42 RATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEK---------I 112 (789)
Q Consensus 42 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~---------~ 112 (789)
.+|-.++.+ ..+.+++.|.+|++|.+.+..+.+|||+.|.+-++.+.|-++.+|+||.||++..|.-.+ .
T Consensus 195 ~~Sc~~~e~-~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~ 273 (1105)
T KOG1326|consen 195 EFSCYLSEV-IHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLK 273 (1105)
T ss_pred ceEEecchh-hhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhc
Confidence 455555544 357899999999999999999999999999999999999999999999999999997211 1
Q ss_pred CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeecCCCcCCccCC
Q 003882 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFPEAWH 192 (789)
Q Consensus 113 ~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~~~~~ 192 (789)
....+.++|||.++.+.++|+|+......-... .+. -.|+++.... ...|++.++..+...+. +-.|-
T Consensus 274 ~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~-----lkw~p~~rg~---~l~gd~l~a~eliq~~~---~i~~p 341 (1105)
T KOG1326|consen 274 NPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPA-----LKWVPTMRGA---FLDGDVLIAAELIQIGK---PIPQP 341 (1105)
T ss_pred CCCeEEEEeehhhhhchHHhhcccccceEEEec-CCc-----cceEEeeccc---ccccchhHHHHHHhhcC---CCCCC
Confidence 246789999999999999999998875443333 122 2799988764 34677766653332221 01111
Q ss_pred CCCcccCCCccccccccccccCccEEEEEEEEEeecCCCCCCCCCCCeEEEEEECCeEEeeecccCCCCCCccCceeEEE
Q 003882 193 SDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFV 272 (789)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~ 272 (789)
..... ......-.+.....+.+.+.|-...-|++..........|-+.+.+|++..++..+.+.-.||.++..+.+.
T Consensus 342 ~~~~~---~~~~~vp~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npnf~s~~~~~ 418 (1105)
T KOG1326|consen 342 PPQRE---IIFSLVPKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPNFPSRVLGR 418 (1105)
T ss_pred Ccccc---cceeccccCCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhCCCCceeEEEE
Confidence 11000 000000011111233334444444456665555556678999999999999998887767899998776554
Q ss_pred e-e----CCCCCeEEEEEEEccCCCCCCceEEEEEec-cccccc----------c--C-------C-----CCCcceeEE
Q 003882 273 A-A----EPFEEQLVLTVENKVTPAKDEPLGRLRLSL-NVIERR----------L--D-------H-----RPVHSKWFN 322 (789)
Q Consensus 273 ~-~----~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l-~~l~~~----------~--~-------~-----~~~~~~w~~ 322 (789)
. . +.....+.++|.|.+.++....+|+|.+.- ....-+ . + . ....+.|++
T Consensus 419 ~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~~~~~~l~ 498 (1105)
T KOG1326|consen 419 LVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRHCNSSTLP 498 (1105)
T ss_pred EEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhhccccCCC
Confidence 3 1 224558999999999999999999997752 211100 0 0 0 000111222
Q ss_pred ccccCc--------------ccchhcc------c-------------ccccccc----eEEEEEEEcCcc----------
Q 003882 323 LEKFGF--------------GALELDK------R-------------HELKFSS----RIHLRVCLEGAY---------- 355 (789)
Q Consensus 323 L~~~~~--------------~~~~g~~------~-------------~~~~~~G----~i~l~i~~~~~~---------- 355 (789)
..+... ++.+.++ + ...++.| -+...++ .|..
T Consensus 499 ~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~D~~~~f~l~-rG~~~~e~~e~~Iv 577 (1105)
T KOG1326|consen 499 ASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQDWAVTFKLY-RGKEGLECLEQQIV 577 (1105)
T ss_pred CCccccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhhhccceeEee-eccccCCCcccchh
Confidence 211110 0000000 0 0000111 0011111 1110
Q ss_pred ----------cccCCcccc-----cCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEE--E
Q 003882 356 ----------HVMDESTMY-----ISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKW--V 418 (789)
Q Consensus 356 ----------~~~d~~~~~-----~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~--~ 418 (789)
++..++... ..+++.. .|-.-.++|.|++|.+|.+. |++|.+|||+.+.+|++. -
T Consensus 578 g~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~-----~pi~~LvrVyvv~A~~L~p~---D~ng~adpYv~l~lGk~~~~d 649 (1105)
T KOG1326|consen 578 GEFKGLFRIYPVPRNPSSPAPPRHFLDLPKE-----EPIKCLVRVYVVEAFSLQPS---DGNGDADPYVKLLLGKKRTLD 649 (1105)
T ss_pred hhhhcceeeecCCCccCCCCChhhhhccccc-----CcceeeEEEEEEEeeecccc---CCCCCcCceeeeeeccchhhh
Confidence 000000000 0011111 12335889999999999987 678999999999999987 5
Q ss_pred eeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcc
Q 003882 419 RTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLST 476 (789)
Q Consensus 419 ~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~ 476 (789)
++..+.+|+||+|++.|.+....| ...++++|||+|..+ .|+.||...|+|..
T Consensus 650 ~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~-----~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 650 RAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA-----QDEKIGETTIDLEN 703 (1105)
T ss_pred hhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc-----ccchhhceehhhhh
Confidence 666788999999999999998887 568999999999986 89999999999876
|
|
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-18 Score=156.98 Aligned_cols=120 Identities=21% Similarity=0.338 Sum_probs=102.9
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEEC--CEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG--LKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSG 460 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 460 (789)
|.|+|++|+||+. ..|.+||||++.++ .+.+||+++++|+||.|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~--- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS--- 72 (126)
T ss_pred CEEEEEEecCCCC-----CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC---
Confidence 5799999999986 24789999999997 4679999999999999999999999766778999999999875
Q ss_pred CCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEeec
Q 003882 461 TKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTCL 512 (789)
Q Consensus 461 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 512 (789)
+|++||++.+++.++..+.....|++|......+.+..|+|++++.|.+.
T Consensus 73 --~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 73 --DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred --CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 79999999999999998877789999975433334557999999998754
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-18 Score=156.25 Aligned_cols=118 Identities=23% Similarity=0.359 Sum_probs=103.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC--eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCcee
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN--YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYI 133 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~--~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~l 133 (789)
|.|+|++|+||+. ..|.+||||+++++. ++++|+++.+|.||+|||+|.|.+... ...|.|+|||++..+++++|
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~~~~~~l 77 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPN-SKELLFEVYDNGKKSDSKFL 77 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCC-CCEEEEEEEECCCCCCCceE
Confidence 6799999999987 578999999999984 578999999999999999999998643 57899999999999899999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeeEEcccCCCC-CccceEEEEEEEEee
Q 003882 134 GKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDD-RKVKGEVMLAVWIGT 181 (789)
Q Consensus 134 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~~~ 181 (789)
|++.+++.++....... .|++|+...+. ....|+|.+++.|..
T Consensus 78 G~~~i~l~~l~~~~~~~-----~~~~L~~~~~~~~~~~G~l~l~~~~~~ 121 (126)
T cd08678 78 GLAIVPFDELRKNPSGR-----QIFPLQGRPYEGDSVSGSITVEFLFME 121 (126)
T ss_pred EEEEEeHHHhccCCcee-----EEEEecCCCCCCCCcceEEEEEEEEec
Confidence 99999999999876554 89999976432 357899999999864
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-18 Score=154.50 Aligned_cols=113 Identities=23% Similarity=0.441 Sum_probs=101.4
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCCCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGGSG 460 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~~~ 460 (789)
.++|.|++|+||+.++. .+.+||||+++++++..+|+++++|.||.|||.|.|.+.++ ...|.|+|||++..+
T Consensus 1 ~~~V~v~~a~~L~~~~~---~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~--- 74 (116)
T cd08376 1 VVTIVLVEGKNLPPMDD---NGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK--- 74 (116)
T ss_pred CEEEEEEEEECCCCCCC---CCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC---
Confidence 37899999999998743 47899999999999999999999999999999999999875 689999999999875
Q ss_pred CCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 461 TKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 461 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
+|++||++.++|+++..+.....|++|.. ..|+|++.+.|
T Consensus 75 --~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~~~~ 114 (116)
T cd08376 75 --KDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLLLTL 114 (116)
T ss_pred --CCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEEEEe
Confidence 88999999999999999888999999962 14999998765
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-18 Score=160.98 Aligned_cols=103 Identities=28% Similarity=0.488 Sum_probs=89.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEcc---------------CCCCc
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKE---------------KIQSS 115 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~---------------~~~~~ 115 (789)
|.|+|++|+||+. .+|.+||||+|++.+ ++++|+++++|.||+|||+|.|.+. +....
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL 79 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence 8999999999998 478999999999987 5679999999999999999999984 22346
Q ss_pred eEEEEEEeCCCCCCCceeEEEEEEccccCCC-CCCCCCCCCeeEEcccCCC
Q 003882 116 VLEVFVRDREIVGRDDYIGKVVFDMNEVPTR-VPPDSPLAPQWYRLEDRRD 165 (789)
Q Consensus 116 ~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~~~w~~L~~~~~ 165 (789)
.|.|.|||++.+++|+|||++.|++..+..+ ... ..||+|++...
T Consensus 80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~-----~~W~~L~~~~~ 125 (148)
T cd04010 80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSH-----QAWYFLQPREE 125 (148)
T ss_pred EEEEEEEcCCCCCCCceeEEEEEecccccccCCcC-----cceeecCCccc
Confidence 8999999999988999999999999999986 333 38999987753
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-18 Score=158.08 Aligned_cols=117 Identities=32% Similarity=0.480 Sum_probs=102.8
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeeeeeccccCCCCCeeccEEEEEcc---CC
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLG---NYKGKTRHFEKKSNPEWKQVFAFSKE---KI 112 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~~~---~~ 112 (789)
|..++++.|+... +.|.|+|++|+||+..+..+.+||||+|.+. .+..+|+++++|.||+|||+|.|.+. ..
T Consensus 3 G~l~~~l~y~~~~--~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l 80 (125)
T cd08386 3 GRIQFSVSYDFQE--STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKL 80 (125)
T ss_pred cEEEEEEEECCCC--CEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHh
Confidence 5688999999877 8999999999999999988999999999994 35789999999999999999999742 23
Q ss_pred CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEccc
Q 003882 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLED 162 (789)
Q Consensus 113 ~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 162 (789)
....|.++|||++.++++++||++.+++.++..+...+ .|+.|.+
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~-----~W~~l~~ 125 (125)
T cd08386 81 QQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQT-----FWKDLKP 125 (125)
T ss_pred CCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcc-----eEEecCC
Confidence 45689999999999999999999999999999766555 9999863
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-18 Score=156.38 Aligned_cols=111 Identities=22% Similarity=0.387 Sum_probs=92.9
Q ss_pred cccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccCC-C
Q 003882 40 SERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEKI-Q 113 (789)
Q Consensus 40 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~-~ 113 (789)
..++++.| .. +.|.|+|++|+||+..+ .|.+||||+|++.+ .++||+++++|.||+|||+|.|.+... .
T Consensus 2 ~l~l~~~~--~~--~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~ 76 (119)
T cd08685 2 QLKLSIEG--QN--RKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDY 76 (119)
T ss_pred EEEEEEEE--cC--CEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHh
Confidence 45566666 34 78999999999999998 78999999999976 356999999999999999999998432 2
Q ss_pred CceEEEEEEeCCCCC-CCceeEEEEEEccccCCCCCCCCCCCCeeEEc
Q 003882 114 SSVLEVFVRDREIVG-RDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160 (789)
Q Consensus 114 ~~~l~v~V~d~~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 160 (789)
...|.|+|||++..+ ++++||++.|++.++..+...+ .||.|
T Consensus 77 ~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~-----~Wy~l 119 (119)
T cd08685 77 QKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEIS-----GWYYL 119 (119)
T ss_pred CCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCcccc-----ceEeC
Confidence 357999999999875 4789999999999998665444 99986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.8e-18 Score=153.82 Aligned_cols=118 Identities=25% Similarity=0.447 Sum_probs=102.4
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSG 460 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 460 (789)
|.|+|+|++|+||+.++ ..+.+||||+|.+++..++|++++++.||.|||.|.|.+.+....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~---~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~--- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAAD---IGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK--- 74 (119)
T ss_pred CEEEEEEEeeeCCCCCC---CCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC---
Confidence 78999999999999874 347899999999999999999999999999999999999877789999999998865
Q ss_pred CCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 461 TKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 461 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
++++||++.+++.++..+. ..||+|..... ..+..|+|.++++|
T Consensus 75 --~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~-~~~~~G~i~l~~~~ 118 (119)
T cd08377 75 --KPEFLGKVAIPLLSIKNGE--RKWYALKDKKL-RTRAKGSILLEMDV 118 (119)
T ss_pred --CCceeeEEEEEHHHCCCCC--ceEEECcccCC-CCceeeEEEEEEEe
Confidence 7899999999999998665 68999975432 22357999999876
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-18 Score=157.22 Aligned_cols=115 Identities=22% Similarity=0.394 Sum_probs=100.7
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC-
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNP-VSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK- 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~- 111 (789)
|..++++.|+... +.|.|+|++|+||+..+ ..+.+||||+|++.+ .+++|++++++.||+|||+|.|.+..
T Consensus 1 G~i~~~l~y~~~~--~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~ 78 (123)
T cd08521 1 GEIEFSLSYNYKT--GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKS 78 (123)
T ss_pred CeEEEEEEEeCCC--CEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHH
Confidence 3578999999877 99999999999999988 678999999999853 35799999999999999999999854
Q ss_pred -CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEc
Q 003882 112 -IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160 (789)
Q Consensus 112 -~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 160 (789)
.....|.|+|||++.++++++||++.++|.++..+...+ .||+|
T Consensus 79 ~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~-----~w~~l 123 (123)
T cd08521 79 QLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQS-----EWYPL 123 (123)
T ss_pred HhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCc-----cEEEC
Confidence 235789999999999999999999999999997665444 89987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.2e-18 Score=156.33 Aligned_cols=123 Identities=25% Similarity=0.453 Sum_probs=101.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCC---------CCceEEEEEEeC
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKI---------QSSVLEVFVRDR 124 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~---------~~~~l~v~V~d~ 124 (789)
++|+|+|++|++|+..+..|.+||||+|.+++++++|+++++|.||+|||+|.|.+..+ ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 57999999999999999999999999999999999999999999999999999985322 125799999999
Q ss_pred CCCCCCceeEEEEE-EccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEee
Q 003882 125 EIVGRDDYIGKVVF-DMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGT 181 (789)
Q Consensus 125 ~~~~~d~~lG~~~i-~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 181 (789)
+..++|++||++.+ ++..+.... .....++|++|.... ...|+|++++.+..
T Consensus 81 d~~~~d~~iG~~~i~~~~~~~~~~--~~~~~~~W~~L~~~~---~~~Geil~~~~~~~ 133 (135)
T cd04017 81 DSVGKDEFLGRSVAKPLVKLDLEE--DFPPKLQWFPIYKGG---QSAGELLAAFELIE 133 (135)
T ss_pred cCCCCCccceEEEeeeeeecccCC--CCCCCceEEEeecCC---CchhheeEEeEEEE
Confidence 99999999999997 444444321 233455999997543 36899999998763
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.5e-18 Score=153.43 Aligned_cols=118 Identities=29% Similarity=0.496 Sum_probs=101.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeE
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIG 134 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG 134 (789)
|.|+|++|++|+..+..|.+||||++.+++. ..+|+++.+|.||+|||.|.|.+... ...|.|+|||++.+++|++||
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~d~~iG 80 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSRDDVIG 80 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCCCCEEE
Confidence 8899999999999999999999999999886 46999999999999999999998654 479999999999999999999
Q ss_pred EEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEE
Q 003882 135 KVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVW 178 (789)
Q Consensus 135 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 178 (789)
++.+++..+..... ....|++|++..+.....|+|++.+.
T Consensus 81 ~~~~~~~~~~~~~~----~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 81 KVSLTREVISAHPR----GIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred EEEEcHHHhccCCC----CCCcEEECeeeCCCCccccEEEEEEE
Confidence 99999988875321 12389999876544467899988864
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-18 Score=156.80 Aligned_cols=123 Identities=23% Similarity=0.437 Sum_probs=103.4
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYD-PCTVITLGVFDNCHLGGS 459 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~~~~~ 459 (789)
|.|+|.|++|+||+..+. ++.+.+||||+|.++++.++|++++++.||.|||.|.|.+.+ ....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~-~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~-- 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDR-SGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA-- 77 (128)
T ss_pred CEEEEEEEEeeCCCcccC-CCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC--
Confidence 789999999999998743 125789999999999999999999999999999999999997 4789999999999875
Q ss_pred CCCCCCccEEEEEECccccc---CceEeeeEeeeecCC-CCCccceEEEEEEEE
Q 003882 460 GTKPDSRIGKVRIRLSTLEA---DRIYTHSYPLLVLNP-SGVKKMGELQLAVRF 509 (789)
Q Consensus 460 ~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~~~~-~g~~~~G~i~l~~~f 509 (789)
.+++||++.|++.++.. ......||+|..... ......|+|+|++.|
T Consensus 78 ---~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 ---GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred ---CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 78999999999999873 344689999976532 123357999998753
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.1e-18 Score=156.41 Aligned_cols=120 Identities=31% Similarity=0.496 Sum_probs=100.9
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC----CceEEEEEEeCCCCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP----CTVITLGVFDNCHLG 457 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~----~~~l~v~v~d~~~~~ 457 (789)
.|+|+|++|+||++.+ ..|.+||||+|.++++..||++++++.||.|||.|.|.+.++ ...|.|+|||++.++
T Consensus 1 ~L~V~vi~A~~L~~~d---~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~ 77 (127)
T cd04022 1 KLVVEVVDAQDLMPKD---GQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG 77 (127)
T ss_pred CeEEEEEEeeCCCCCC---CCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc
Confidence 3789999999999874 457899999999999999999999999999999999999864 358999999988762
Q ss_pred CCCCCCCCccEEEEEECcccc-cCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 458 GSGTKPDSRIGKVRIRLSTLE-ADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 458 ~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
..+++||++.|+++++. .+.....||+|..... ..+.+|+|+|++.|
T Consensus 78 ----~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~ 125 (127)
T cd04022 78 ----RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGL-FSRVRGEIGLKVYI 125 (127)
T ss_pred ----CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCC-CCCccEEEEEEEEE
Confidence 25889999999999998 4666789999975432 22357999998865
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.1e-18 Score=154.23 Aligned_cols=114 Identities=28% Similarity=0.504 Sum_probs=100.2
Q ss_pred eEEEEEEEEeeCCCCCCC------CCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCC
Q 003882 54 FYLYVRVEKARDLPTNPV------SGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIV 127 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~------~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~ 127 (789)
|.|.|+|++|+||+..+. .|.+||||+|+++++.++|+++++|.||+|||+|.|.+.+.....|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 579999999999998874 36899999999999999999999999999999999999776678999999999987
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEE
Q 003882 128 GRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVW 178 (789)
Q Consensus 128 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 178 (789)
++++||.+.+++.++..+...+ .||+|++. ..|+|++.+.
T Consensus 81 -~~~~iG~~~i~l~~l~~~~~~~-----~w~~L~~~-----~~G~~~~~~~ 120 (121)
T cd08391 81 -KDDFLGRLSIDLGSVEKKGFID-----EWLPLEDV-----KSGRLHLKLE 120 (121)
T ss_pred -CCCcEEEEEEEHHHhcccCccc-----eEEECcCC-----CCceEEEEEe
Confidence 8999999999999998765444 99999864 3688888764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-18 Score=151.06 Aligned_cols=102 Identities=24% Similarity=0.375 Sum_probs=89.2
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 53 MFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 53 ~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
|+.|.|+|++|++|+..+ ..||||++.+++++.+|+++++ .||+|||+|.|.+.+.. ..|.|+|||++.+ +|++
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~-~~L~v~V~dkd~~-~DD~ 74 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLD-LGLVIELWNKGLI-WDTL 74 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCC-CEEEEEEEeCCCc-CCCc
Confidence 578999999999997643 5699999999999999999988 59999999999998764 4599999999975 8999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeeEEcccC
Q 003882 133 IGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR 163 (789)
Q Consensus 133 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 163 (789)
||++.|+|.++..+. .++.++||+|+..
T Consensus 75 lG~v~i~L~~v~~~~---~~~~~~Wy~L~~~ 102 (127)
T cd08394 75 VGTVWIPLSTIRQSN---EEGPGEWLTLDSE 102 (127)
T ss_pred eEEEEEEhHHcccCC---CCCCCccEecChH
Confidence 999999999999774 3556799999854
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.4e-18 Score=154.57 Aligned_cols=117 Identities=27% Similarity=0.525 Sum_probs=101.6
Q ss_pred cEEEEEEEEccCCCCCccCC---CCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRD---GRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYD-PCTVITLGVFDNCHL 456 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~---~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~~ 456 (789)
|.|+|+|++|+||+.++... ..|.+||||+|+++++.++|++++++.||.|||.|.|.+.+ +...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~ 80 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD 80 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence 68999999999999875421 13689999999999999999999999999999999999986 478999999999874
Q ss_pred CCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 457 GGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 457 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
++++||++.++++++..+.....||+|... ..|+|+++++|
T Consensus 81 ------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 81 ------KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred ------CCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 688999999999999988778999999632 45999998764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.3e-18 Score=153.82 Aligned_cols=100 Identities=23% Similarity=0.312 Sum_probs=89.1
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeC----CCceEEEEEE
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG-----LKWVRTRTLVDNFNPKWNEQYTWEVYD----PCTVITLGVF 451 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~v~ 451 (789)
|.|.|.|++|+||++++ .+.+||||+|++. ..+.||++++++.||.|||+|.|++.. ....|.|+||
T Consensus 13 ~~L~V~Vi~A~~L~~~~----~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~ 88 (122)
T cd08381 13 GTLFVMVMHAKNLPLLD----GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVW 88 (122)
T ss_pred CEEEEEEEEeeCCCCCC----CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEE
Confidence 59999999999999874 4789999999995 346899999999999999999999832 3579999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEee
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 489 (789)
|++.++ ++++||++.|+|+++..++....||+|
T Consensus 89 d~d~~~-----~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 89 SHDSLV-----ENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred eCCCCc-----CCcEEEEEEEeccccccCCCccceEEC
Confidence 999875 789999999999999988878999987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.7e-18 Score=150.26 Aligned_cols=102 Identities=25% Similarity=0.468 Sum_probs=91.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeEE
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGK 135 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG~ 135 (789)
|.|+|++|+||+..+..+.+||||+|+++++.++|+++++|.||+|||+|.|.+.++..+.|.|+|+|++. +++||+
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG~ 78 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLGS 78 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccEE
Confidence 89999999999999888999999999999999999999999999999999999988767899999999986 889999
Q ss_pred EEEEccccCCCCCCCCCCCCeeEEcccC
Q 003882 136 VVFDMNEVPTRVPPDSPLAPQWYRLEDR 163 (789)
Q Consensus 136 ~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 163 (789)
+.++|.++..+. ....+.||+|++.
T Consensus 79 ~~i~l~~l~~~~---~~~~~~w~~L~~~ 103 (105)
T cd04050 79 LTLPLSELLKEP---DLTLDQPFPLDNS 103 (105)
T ss_pred EEEEHHHhhccc---cceeeeeEecCCC
Confidence 999999998763 1234599999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=157.96 Aligned_cols=119 Identities=24% Similarity=0.441 Sum_probs=102.8
Q ss_pred eEEEEEEEEeeCCCCCC------------------------------CCCCCCcEEEEEECCee-eeeccccCCCCCeec
Q 003882 54 FYLYVRVEKARDLPTNP------------------------------VSGSCDPYVEVKLGNYK-GKTRHFEKKSNPEWK 102 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~------------------------------~~g~~dpyv~v~~~~~~-~~T~~~~~t~nP~wn 102 (789)
|.|.|+|.+|++|+++| ..|.+||||+|.+++.+ .||++++++.||+||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~Wn 86 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWN 86 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCccc
Confidence 89999999999999987 35678999999999854 699999999999999
Q ss_pred cEEEEEccCCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCC-ccceEEEEEEEE
Q 003882 103 QVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDR-KVKGEVMLAVWI 179 (789)
Q Consensus 103 e~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 179 (789)
|+|.|.+... .+.|.|.|||++.++ +++||++.++++++..+...+ .||+|.+..+.. ...|.|++++.|
T Consensus 87 E~F~~~~~~~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~-----~w~~L~~~~~~~~~~~~~l~v~~~f 157 (158)
T cd04015 87 ESFHIYCAHY-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVE-----GWLPILDSNGKPPKPGAKIRVSLQF 157 (158)
T ss_pred eEEEEEccCC-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcc-----eEEECcCCCCCCCCCCCEEEEEEEE
Confidence 9999998765 478999999999874 689999999999998766555 999998875543 446899999877
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.9e-18 Score=153.06 Aligned_cols=103 Identities=18% Similarity=0.268 Sum_probs=90.3
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeC---CCceEEEEEE
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG-----LKWVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLGVF 451 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~ 451 (789)
.|.|.|.|++|+||++.+. ..+.+||||+|.+. ..+.||++++++.||.|||.|.|.+.. ....|.|+||
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~--~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~ 91 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDE--AKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW 91 (125)
T ss_pred CCeEEEEEEEecCCCccCC--CCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence 4799999999999998742 25789999999883 235899999999999999999999875 3568999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEee
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 489 (789)
|++.++ ++++||.+.|+|.++...+..+.||||
T Consensus 92 d~~~~~-----~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 92 HYDRFG-----RNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred ECCCCC-----CCcEEEEEEEeCCcccccCCcccEEEC
Confidence 999876 889999999999999998889999998
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.2e-18 Score=154.13 Aligned_cols=117 Identities=29% Similarity=0.391 Sum_probs=103.2
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEccCC--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNP-VSGSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFSKEKI-- 112 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~~~~~-- 112 (789)
|...+++.|+... +.|.|+|++|+||+..+ ..+.+||||+|++.+ ..++|++++++.||+|||+|.|.+...
T Consensus 1 G~l~~~l~y~~~~--~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l 78 (123)
T cd08390 1 GRLWFSVQYDLEE--EQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKEL 78 (123)
T ss_pred CEEEEEEEECCCC--CEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHh
Confidence 4578999999988 89999999999999988 678899999999853 467999999999999999999998543
Q ss_pred CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEccc
Q 003882 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLED 162 (789)
Q Consensus 113 ~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 162 (789)
....|.|+|||++..+++++||++.++|.++......+ .|++|++
T Consensus 79 ~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~-----~w~~L~~ 123 (123)
T cd08390 79 QRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGV-----VWRDLEP 123 (123)
T ss_pred cccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCce-----EEEeCCC
Confidence 34689999999999888999999999999999877655 9999874
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.3e-18 Score=151.19 Aligned_cols=106 Identities=27% Similarity=0.403 Sum_probs=93.5
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCC----CCceEEEEEEeCCCC
Q 003882 52 QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKI----QSSVLEVFVRDREIV 127 (789)
Q Consensus 52 ~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~----~~~~l~v~V~d~~~~ 127 (789)
+.+.|.|+|++|++|+ +|.+||||++++++++++|++++++.||.|||+|.|.+... ....|.|+|||++.+
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 4589999999999998 57899999999999999999999999999999999997543 246899999999999
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccC
Q 003882 128 GRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR 163 (789)
Q Consensus 128 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 163 (789)
+++++||++.++|+++..+.. +.+...|++|.++
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~--~~~~~~w~~L~~~ 111 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPD--HAFLRKWLLLTDP 111 (111)
T ss_pred ccCCccEEEEECCccccCCCC--CcceEEEEEeeCc
Confidence 899999999999999987633 4567799999863
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=154.18 Aligned_cols=105 Identities=20% Similarity=0.323 Sum_probs=90.9
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE--CC---EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEE-eCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY--GL---KWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVF-DNC 454 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~---~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~-d~~ 454 (789)
|.|.|.|++|+||++++ +..|.+||||++++ ++ .+.||+++++|+||+|||.|.|.+......|.|+|| |++
T Consensus 29 ~~L~V~Vi~ArnL~~~~--~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~ 106 (146)
T cd04028 29 GQLEVEVIRARGLVQKP--GSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYG 106 (146)
T ss_pred CEEEEEEEEeeCCCccc--CCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence 69999999999998764 23578999999999 33 368999999999999999999999866779999999 566
Q ss_pred CCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeec
Q 003882 455 HLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVL 492 (789)
Q Consensus 455 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 492 (789)
.++ ++++||.+.|+|+++..+.....||+|...
T Consensus 107 ~~~-----~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 107 RMD-----KKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCC-----CCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 654 789999999999999888888999999743
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.5e-18 Score=152.99 Aligned_cols=113 Identities=26% Similarity=0.330 Sum_probs=97.6
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCCCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGGSG 460 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~~~ 460 (789)
.|.|+|++|+||+.+ .+||||++.++++..||++++++.||+|||.|.|.+.++ ...|.|+|||++..
T Consensus 1 ~L~V~Vi~a~~L~~~-------~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~---- 69 (121)
T cd08378 1 YLYVRVVKARGLPAN-------SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA---- 69 (121)
T ss_pred CEEEEEEEecCCCcc-------cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC----
Confidence 488999999999864 689999999999999999999999999999999998874 67899999999875
Q ss_pred CCCCCccEEEEEECcccccCc-----eEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 461 TKPDSRIGKVRIRLSTLEADR-----IYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 461 ~~~d~~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
.+++||++.++++++..++ ....||+|..... .+..|+|+|.+.|
T Consensus 70 --~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~--~~~~G~i~l~~~~ 119 (121)
T cd08378 70 --KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG--GRVGGELMLAVWF 119 (121)
T ss_pred --cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC--CccceEEEEEEEe
Confidence 6889999999999987532 3569999976532 4457999999977
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=152.56 Aligned_cols=115 Identities=29% Similarity=0.551 Sum_probs=100.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCC-------
Q 003882 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIV------- 127 (789)
Q Consensus 55 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~------- 127 (789)
.|.|+|++|++|+..+..|.+||||+|+++++.++|+++.+|.||.|||+|.|.+... ...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~~~~~~~ 80 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDIKSRLKQ 80 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCcccccce
Confidence 5899999999999999889999999999998899999999999999999999998655 47899999999852
Q ss_pred ----CCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEE
Q 003882 128 ----GRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAV 177 (789)
Q Consensus 128 ----~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~ 177 (789)
+++++||++.+++.++... . +.||.|++..+.....|+|.+++
T Consensus 81 ~~~~~~~~~iG~~~i~l~~~~~~--~-----~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 81 KFTRESDDFLGQTIIEVRTLSGE--M-----DVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred eccccCCCcceEEEEEhHHccCC--C-----CeEEECccCCCCCcEeEEEEEEC
Confidence 4799999999999987533 2 29999998776667899998864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-18 Score=149.07 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=87.1
Q ss_pred CCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC----EEEeeccccCCCCCccccEEEEEEeC---CCceEEEE
Q 003882 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL----KWVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLG 449 (789)
Q Consensus 377 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~----~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~ 449 (789)
.+..|.|+|+|++|+||+ . .|.+||||++++.. .+.+|+++++|+||+|||.|.|.|.. +...|.|+
T Consensus 10 ~~~~~~L~V~vikA~~L~-~-----~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~ 83 (118)
T cd08677 10 DKQKAELHVNILEAENIS-V-----DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLT 83 (118)
T ss_pred cCcCCEEEEEEEEecCCC-C-----CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEE
Confidence 445589999999999998 2 24599999999943 57899999999999999999999874 36789999
Q ss_pred EEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEee
Q 003882 450 VFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489 (789)
Q Consensus 450 v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 489 (789)
|||+|+++ ++++||++.+++.++..+.+.++|..|
T Consensus 84 V~d~Drfs-----~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 84 LRCCDRFS-----RHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EEeCCCCC-----CCceEEEEEEccccccCCccccchhcC
Confidence 99999997 899999999999998666666777654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.7e-18 Score=153.33 Aligned_cols=102 Identities=25% Similarity=0.370 Sum_probs=89.0
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEe
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG-----LKWVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLGVFD 452 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~d 452 (789)
+.|.|+|++|+||++++. ..|.+||||+|.+. ..+.||+++++++||.|||.|.|++.. ....|.|+|||
T Consensus 15 ~~L~V~vi~a~~L~~~d~--~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d 92 (125)
T cd08393 15 RELHVHVIQCQDLAAADP--KKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWH 92 (125)
T ss_pred CEEEEEEEEeCCCCCcCC--CCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEe
Confidence 699999999999998742 13789999999983 235899999999999999999999874 25689999999
Q ss_pred CCCCCCCCCCCCCccEEEEEECcccccCceEeeeEee
Q 003882 453 NCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489 (789)
Q Consensus 453 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 489 (789)
++.++ ++++||.+.|+|.++..++....||+|
T Consensus 93 ~~~~~-----~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 93 RDSLG-----RNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred CCCCC-----CCcEeEEEEEecCccccCCCCcceEEC
Confidence 99875 889999999999999887777899987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-17 Score=152.23 Aligned_cols=118 Identities=24% Similarity=0.387 Sum_probs=100.8
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCCCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGGSG 460 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~~~ 460 (789)
+|+|+|++|++|+.++ ..+.+||||+|+++++.++|++++++.||.|||.|.|.+.+. ...|.|+|||++..+
T Consensus 1 ~L~v~vi~a~~L~~~d---~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~--- 74 (123)
T cd04025 1 RLRCHVLEARDLAPKD---RNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS--- 74 (123)
T ss_pred CEEEEEEEeeCCCCCC---CCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC---
Confidence 4899999999999874 346899999999999999999999999999999999999875 578999999999875
Q ss_pred CCCCCccEEEEEECcccccCceEeeeEeeeecCCC---CCccceEEEEEE
Q 003882 461 TKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPS---GVKKMGELQLAV 507 (789)
Q Consensus 461 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~---g~~~~G~i~l~~ 507 (789)
.+++||.+.++|+++..+.....||.|...... ..+..|.|++.|
T Consensus 75 --~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 75 --KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred --CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 789999999999999877667899999754322 223479998876
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=152.45 Aligned_cols=121 Identities=32% Similarity=0.369 Sum_probs=101.4
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC--EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCC
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL--KWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLG 457 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~--~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~ 457 (789)
+|.|+|+|++|+||+..+. ..+.+||||++++++ +..+|+++.++.||.|||.|.|.+......|.|+|||++..+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~--~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~ 78 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDI--IGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKR 78 (124)
T ss_pred CeEEEEEEEcccCCCcccc--cCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCC
Confidence 4899999999999986532 245789999999987 789999999999999999999999866889999999998865
Q ss_pred CCCCCCCCccEEEEEECcccccCceEe-eeEeeeecCCCCCccceEEEEEEEEee
Q 003882 458 GSGTKPDSRIGKVRIRLSTLEADRIYT-HSYPLLVLNPSGVKKMGELQLAVRFTC 511 (789)
Q Consensus 458 ~~~~~~d~~lG~~~i~l~~l~~~~~~~-~~~~L~~~~~~g~~~~G~i~l~~~f~~ 511 (789)
.|++||++.++|.++..+.... .++++. .+.+..|+|+++++|.|
T Consensus 79 -----~d~~iG~~~~~l~~l~~~~~~~~~~~~~~----~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 79 -----KDKLIGTAEFDLSSLLQNPEQENLTKNLL----RNGKPVGELNYDLRFFP 124 (124)
T ss_pred -----CCceeEEEEEEHHHhccCccccCcchhhh----cCCccceEEEEEEEeCC
Confidence 7899999999999999876654 344553 23345799999999864
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-18 Score=157.00 Aligned_cols=117 Identities=24% Similarity=0.277 Sum_probs=98.4
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-----eeeeccccCCCCCeeccEEEEEccC--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-----KGKTRHFEKKSNPEWKQVFAFSKEK-- 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-----~~~T~~~~~t~nP~wne~f~f~~~~-- 111 (789)
|.+++++.|+... ..|.|+|++|+||+..+..|.+||||+|++.+. ++||+++++|.||+|||+|.|.+..
T Consensus 2 G~i~~sL~Y~~~~--~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~ 79 (136)
T cd08406 2 GEILLSLSYLPTA--ERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIV 79 (136)
T ss_pred cEEEEEEEEcCCC--CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHH
Confidence 5678999999887 899999999999999998899999999999642 5689999999999999999999853
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
+....|.|+|||++.++++++||++.|.... .+...+ +|..+....
T Consensus 80 l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~-----hW~~ml~~~ 125 (136)
T cd08406 80 LQDLSLRVTVAESTEDGKTPNVGHVIIGPAA--SGMGLS-----HWNQMLASL 125 (136)
T ss_pred hCCcEEEEEEEeCCCCCCCCeeEEEEECCCC--CChhHH-----HHHHHHHCC
Confidence 4578999999999999999999999996653 222223 677666544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=159.10 Aligned_cols=120 Identities=23% Similarity=0.370 Sum_probs=101.5
Q ss_pred ccccceeeecccC----------ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeecc
Q 003882 39 SSERATSTYDLVE----------QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQ 103 (789)
Q Consensus 39 ~~~~~~~~~~~~~----------~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne 103 (789)
|...+++.|.... ..+.|.|+|++|+||+..+..+.+||||+|++.+ +++||+++++|.||+|||
T Consensus 2 G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE 81 (162)
T cd04020 2 GELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNH 81 (162)
T ss_pred ceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCC
Confidence 4567888888833 4589999999999999999889999999999842 578999999999999999
Q ss_pred EEEEEcc---CCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccC
Q 003882 104 VFAFSKE---KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR 163 (789)
Q Consensus 104 ~f~f~~~---~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 163 (789)
+|.|.+. +.....|.|+|||++.++++++||++.+++.++......+ .|+.|...
T Consensus 82 ~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~-----~w~~~~~~ 139 (162)
T cd04020 82 TFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAV-----DWMDSTGE 139 (162)
T ss_pred EEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCcc-----ccccCChH
Confidence 9999852 3345689999999999989999999999999988765544 89888654
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.5e-17 Score=148.48 Aligned_cols=119 Identities=19% Similarity=0.307 Sum_probs=102.0
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 53 MFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 53 ~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
...|+|+|++|++|...+..|.+||||++.++++..+|+++++|.||+|||.|.|.+.+. ...|.|+|||++.+ +|++
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~~~-~d~~ 79 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSNLL-CDEF 79 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECCCC-CCCc
Confidence 368999999999999999889999999999999999999999999999999999988765 58999999999987 5899
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeeEEcccCC--CCCccceEEEEEEEEe
Q 003882 133 IGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR--DDRKVKGEVMLAVWIG 180 (789)
Q Consensus 133 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~--~~~~~~G~l~l~~~~~ 180 (789)
||++.+++..+... . ..|++|+... ..+...|+|.+++.+.
T Consensus 80 lG~~~~~l~~~~~~--~-----~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 80 LGQATLSADPNDSQ--T-----LRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred eEEEEEecccCCCc--C-----ceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 99999999875432 2 2789997433 2346789999998764
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-17 Score=153.19 Aligned_cols=119 Identities=27% Similarity=0.407 Sum_probs=100.2
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE-------EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-------WVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNC 454 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-------~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~ 454 (789)
.|+|+|++|+||+.++ ..+.+||||+|.+++. ..+|+++++|.||.|||.|.|.+......|.|+|||++
T Consensus 1 ~L~v~Vi~a~~L~~~d---~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~ 77 (133)
T cd04033 1 ILRVKVLAGIDLAKKD---IFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDEN 77 (133)
T ss_pred CEEEEEEEeECCCccc---CCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECC
Confidence 3789999999999874 4578999999999654 57999999999999999999999776778999999999
Q ss_pred CCCCCCCCCCCccEEEEEECcccccCce------EeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 455 HLGGSGTKPDSRIGKVRIRLSTLEADRI------YTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 455 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
.++ .+++||++.++++++..+.. ...||+|......+ +..|+|++++.|
T Consensus 78 ~~~-----~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~ 132 (133)
T cd04033 78 RLT-----RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAY 132 (133)
T ss_pred CCC-----CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEee
Confidence 875 78999999999999886542 46999998543333 346999999887
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-17 Score=149.14 Aligned_cols=117 Identities=27% Similarity=0.451 Sum_probs=99.3
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGT 461 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~ 461 (789)
|.|+|++|+||+.++. .|.+||||++.++++ ..||++++++.||.|||.|.|.+.+....|.|+|||++.++
T Consensus 2 l~v~vi~a~~L~~~d~---~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~---- 74 (121)
T cd04054 2 LYIRIVEGKNLPAKDI---TGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS---- 74 (121)
T ss_pred EEEEEEEeeCCcCCCC---CCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC----
Confidence 7899999999998853 578999999999876 47999999999999999999999876789999999999876
Q ss_pred CCCCccEEEEEECcccccC-ceEeeeEeeeecCCCCCccceEEEEEEE
Q 003882 462 KPDSRIGKVRIRLSTLEAD-RIYTHSYPLLVLNPSGVKKMGELQLAVR 508 (789)
Q Consensus 462 ~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 508 (789)
.|++||++.+++.++..+ ...+.|++|...+..+ ...|+|+++++
T Consensus 75 -~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~-~~~G~i~l~~~ 120 (121)
T cd04054 75 -RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE-EVQGEIHLELS 120 (121)
T ss_pred -CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCC-ccccEEEEEEE
Confidence 899999999999988754 3468999997654332 24699998864
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-17 Score=149.75 Aligned_cols=113 Identities=24% Similarity=0.328 Sum_probs=97.8
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEEC---CEEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG---LKWVRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGG 458 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~ 458 (789)
|+|+|++|+||+..+ ..+.+||||++.++ .+..||++++++.||+|||.|.|.+..+ ...|.|+|||++..
T Consensus 2 L~V~vi~a~~L~~~~---~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-- 76 (119)
T cd04036 2 LTVRVLRATNITKGD---LLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-- 76 (119)
T ss_pred eEEEEEEeeCCCccC---CCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC--
Confidence 789999999999874 35789999999985 3679999999999999999999998764 56799999999875
Q ss_pred CCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEe
Q 003882 459 SGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFT 510 (789)
Q Consensus 459 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 510 (789)
+|++||++.++++++..+.....|++|... ..|++++++.++
T Consensus 77 ----~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~------~~g~l~~~~~~~ 118 (119)
T cd04036 77 ----MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQ------GKEELEVEFLLE 118 (119)
T ss_pred ----CCcccEEEEEEHHHCCCCCcEEEEEECCCC------CCceEEEEEEee
Confidence 688999999999999999999999999632 359999988664
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-17 Score=148.33 Aligned_cols=105 Identities=35% Similarity=0.520 Sum_probs=91.5
Q ss_pred EEEEEEEeeCCCCCCC-CCCCCcEEEEEECCeeeeeccccCCCCCee-ccEEEEEccCC--CCceEEEEEEeCCCCCCCc
Q 003882 56 LYVRVEKARDLPTNPV-SGSCDPYVEVKLGNYKGKTRHFEKKSNPEW-KQVFAFSKEKI--QSSVLEVFVRDREIVGRDD 131 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~-~g~~dpyv~v~~~~~~~~T~~~~~t~nP~w-ne~f~f~~~~~--~~~~l~v~V~d~~~~~~d~ 131 (789)
|.|+|++|+||+.++. .|.+||||+++++++++||++++++.||.| ||+|.|.+... ....|.|+|||++.+++++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~ 80 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND 80 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence 6799999999998874 688999999999999999999999999999 99999998653 3578999999999999999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeeEEccc
Q 003882 132 YIGKVVFDMNEVPTRVPPDSPLAPQWYRLED 162 (789)
Q Consensus 132 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 162 (789)
+||++.+++.++..... ......||+|.+
T Consensus 81 ~iG~~~~~l~~l~~~~~--~~~~~~w~~l~~ 109 (110)
T cd08688 81 AIGKVYIDLNPLLLKDS--VSQISGWFPIYD 109 (110)
T ss_pred ceEEEEEeHHHhcccCC--ccccCCeEEccc
Confidence 99999999999998421 122448999976
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.6e-17 Score=148.42 Aligned_cols=120 Identities=20% Similarity=0.288 Sum_probs=99.9
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGS 459 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~ 459 (789)
.+.++|+|++|++|+..+ ..|.+||||++.++++.++|++++++.||+|||.|.|.+.++...|.|+|||++..
T Consensus 2 ~~~~~V~v~~A~~L~~~d---~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~--- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQD---SGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL--- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCC---CCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC---
Confidence 468999999999999764 45789999999999999999999999999999999999988888999999999875
Q ss_pred CCCCCCccEEEEEECcccccCceEeeeEeeeecC-CCCCccceEEEEEEEEe
Q 003882 460 GTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLN-PSGVKKMGELQLAVRFT 510 (789)
Q Consensus 460 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~-~~g~~~~G~i~l~~~f~ 510 (789)
.|++||.+.+++.++..+ ...+++|.... ....+..|+|.+++.+.
T Consensus 76 ---~d~~lG~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~~~G~i~~~~~~~ 122 (126)
T cd04046 76 ---CDEFLGQATLSADPNDSQ--TLRTLPLRKRGRDAAGEVPGTISVKVTSS 122 (126)
T ss_pred ---CCCceEEEEEecccCCCc--CceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence 589999999999986533 35788885221 12234579999988654
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-17 Score=149.50 Aligned_cols=116 Identities=19% Similarity=0.317 Sum_probs=99.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC-CeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCC--Cce
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLG-NYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGR--DDY 132 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~-~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~--d~~ 132 (789)
|+|+|++|++|+..+..+.+||||+++++ .+.++|+++++|.||.|||+|.|.+.. ...|.|+|||++.+++ +++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~~~d~~ 79 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKKKDQGF 79 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCCCCCce
Confidence 78999999999999988999999999997 578899999999999999999999965 5899999999998875 579
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeeEEcccCCC--CCccceEEEEEE
Q 003882 133 IGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD--DRKVKGEVMLAV 177 (789)
Q Consensus 133 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~--~~~~~G~l~l~~ 177 (789)
||++.+++.++...... ...||+|+.... .....|+|.+++
T Consensus 80 lG~~~i~l~~l~~~~~~----~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 80 LGCVRIRANAVLPLKDT----GYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred EeEEEEEHHHccccCCC----ccceeEeecCCCCCCceEeeEEEEEe
Confidence 99999999999865422 237999977654 335689998765
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-17 Score=146.28 Aligned_cols=97 Identities=19% Similarity=0.290 Sum_probs=85.5
Q ss_pred eEEEEEEEEeeCCCCCCC----CCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCC-CCceEEEEEEeCCCCC
Q 003882 54 FYLYVRVEKARDLPTNPV----SGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKI-QSSVLEVFVRDREIVG 128 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~----~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~-~~~~l~v~V~d~~~~~ 128 (789)
|.|.|+|++|++|+..+. ++.+||||+|+++++.+||+++++|.||+|||+|.|.+... ....|.|+|||++.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 579999999999998763 23589999999999999999999999999999999998543 3458999999999999
Q ss_pred CCceeEEEEEEccccCCCCCCC
Q 003882 129 RDDYIGKVVFDMNEVPTRVPPD 150 (789)
Q Consensus 129 ~d~~lG~~~i~l~~l~~~~~~~ 150 (789)
+|++||++.++|++|..+....
T Consensus 81 ~dd~IG~~~l~L~~l~~~~~~~ 102 (108)
T cd04039 81 FNDYVATGSLSVQELLNAAPQP 102 (108)
T ss_pred CCcceEEEEEEHHHHHhhCCCC
Confidence 9999999999999999876543
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-17 Score=149.46 Aligned_cols=116 Identities=25% Similarity=0.375 Sum_probs=101.8
Q ss_pred EEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCC--CCceEEEEEEeCCCCCCCceeEEEE
Q 003882 60 VEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKI--QSSVLEVFVRDREIVGRDDYIGKVV 137 (789)
Q Consensus 60 v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~--~~~~l~v~V~d~~~~~~d~~lG~~~ 137 (789)
|++|+||+. ..|.+||||+|++++.+++|++++++.||+|||+|.|.+... ....|.|+|||++..+++++||++.
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~ 79 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT 79 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence 689999998 578999999999999999999999999999999999998653 4689999999999998999999999
Q ss_pred EEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeecC
Q 003882 138 FDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQA 183 (789)
Q Consensus 138 i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~ 183 (789)
+++.++..+.... .|++|.+..+. ...|+|+++++|.+..
T Consensus 80 ~~l~~l~~~~~~~-----~~~~L~~~~~~-~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 80 VSLQDLVSEGLLE-----VTEPLLDSNGR-PTGATISLEVSYQPPD 119 (127)
T ss_pred EEhhHcccCCceE-----EEEeCcCCCCC-cccEEEEEEEEEeCCC
Confidence 9999999765544 89999877654 4579999999997543
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-17 Score=148.62 Aligned_cols=101 Identities=27% Similarity=0.420 Sum_probs=88.6
Q ss_pred eEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEccCC---CCceEEEEEEeCCC
Q 003882 54 FYLYVRVEKARDLPTNPVS-GSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFSKEKI---QSSVLEVFVRDREI 126 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~~~~~---~~~~l~v~V~d~~~ 126 (789)
|.|.|+|++|++|+..+.. +.+||||+|++.+ ..++|+++++|.||+|||+|.|.+... ....|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 5799999999999999887 8999999999964 357999999999999999999987543 35789999999999
Q ss_pred CCCCceeEEEEEEccccCCCCCCCCCCCCeeEEccc
Q 003882 127 VGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLED 162 (789)
Q Consensus 127 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 162 (789)
+++|++||++.+++.++.... .|+++..
T Consensus 81 ~~~dd~lG~~~i~l~~l~~~~--------~~~~~~~ 108 (111)
T cd04041 81 FTADDRLGRVEIDLKELIEDR--------NWMGRRE 108 (111)
T ss_pred CCCCCcceEEEEEHHHHhcCC--------CCCcccc
Confidence 999999999999999998432 7888754
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-17 Score=147.05 Aligned_cols=100 Identities=19% Similarity=0.291 Sum_probs=86.9
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEE-C----C--EEEeeccccCCCCCccccEEEEEEeCC----CceEEEEE
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-G----L--KWVRTRTLVDNFNPKWNEQYTWEVYDP----CTVITLGV 450 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-~----~--~~~~T~~~~~t~~P~wne~~~f~v~~~----~~~l~v~v 450 (789)
.|+|+|++|+||+..+ .|.+||||+|++ | . ++++|+++.+|+||+|||.|.|.+... ...|.|.|
T Consensus 1 kL~V~Vi~A~~L~~~d----~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V 76 (120)
T cd08395 1 KVTVKVVAANDLKWQT----TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICV 76 (120)
T ss_pred CEEEEEEECcCCCccc----CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEE
Confidence 3899999999998763 378999999997 3 2 357899999999999999999999742 35799999
Q ss_pred EeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 451 FDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 451 ~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
||+|..+ ++++||++.++++++..++....|++|.
T Consensus 77 ~D~d~~~-----~dd~IG~~~l~l~~~~~~~~~~~w~~L~ 111 (120)
T cd08395 77 KDYCFAR-----DDRLVGVTVLQLRDIAQAGSCACWLPLG 111 (120)
T ss_pred EEecccC-----CCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence 9998764 7899999999999999999889999995
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.9e-18 Score=154.25 Aligned_cols=102 Identities=23% Similarity=0.316 Sum_probs=90.2
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECCe-----eeeeccccCCCCCeeccEEEEEccC
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPV--SGSCDPYVEVKLGNY-----KGKTRHFEKKSNPEWKQVFAFSKEK 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~--~g~~dpyv~v~~~~~-----~~~T~~~~~t~nP~wne~f~f~~~~ 111 (789)
|...+++.|.... +.|.|+|++|+||...+. .+.+||||+|++.++ ++||+++++|.||+|||+|.|.+..
T Consensus 2 Gel~~sL~Y~~~~--~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~ 79 (138)
T cd08407 2 GEVLLSISYLPAA--NRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPS 79 (138)
T ss_pred CEEEEEEEEeCCC--CeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCH
Confidence 4678999999877 899999999999999873 355999999999763 5699999999999999999999853
Q ss_pred --CCCceEEEEEEeCCCCCCCceeEEEEEEccc
Q 003882 112 --IQSSVLEVFVRDREIVGRDDYIGKVVFDMNE 142 (789)
Q Consensus 112 --~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~ 142 (789)
+....|.|+|||++.++++++||++.+.+..
T Consensus 80 ~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 80 ELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred HHhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 4568899999999999999999999999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-17 Score=145.00 Aligned_cols=98 Identities=17% Similarity=0.166 Sum_probs=87.1
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSG 460 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 460 (789)
|.|.|.|++|++|+.+ +..||||+|++|+++.+|++++++ ||.|||.|.|.+.++...|.|+|||++.+
T Consensus 2 ~~L~V~Vv~Ar~L~~~------~~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~---- 70 (127)
T cd08394 2 SLLCVLVKKAKLDGAP------DKFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI---- 70 (127)
T ss_pred ceEEEEEEEeeCCCCC------CCCCCeEEEEECCEEeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc----
Confidence 6899999999999743 356999999999999999999884 99999999999988777899999999865
Q ss_pred CCCCCccEEEEEECcccccCceE--eeeEeeee
Q 003882 461 TKPDSRIGKVRIRLSTLEADRIY--THSYPLLV 491 (789)
Q Consensus 461 ~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~ 491 (789)
.|++||++.|+|+++..+... ..||+|..
T Consensus 71 --~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 71 --WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred --CCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 799999999999999876554 89999963
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=147.50 Aligned_cols=114 Identities=24% Similarity=0.406 Sum_probs=99.1
Q ss_pred eEEEEEEEEeeCCCCCCCC----------CCCCcEEEEEECCee-eeeccccCCCCCeeccEEEEEccCCCCceEEEEEE
Q 003882 54 FYLYVRVEKARDLPTNPVS----------GSCDPYVEVKLGNYK-GKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVR 122 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~----------g~~dpyv~v~~~~~~-~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~ 122 (789)
|.|+|+|++|++|...+.. +.+||||++.++++. .+|+++.+|.||.|||+|.|.+.+ ...|.|.||
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~l~~~v~ 81 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN--GRNLELTVF 81 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC--CCEEEEEEE
Confidence 7899999999999988752 679999999999865 699999999999999999999973 578999999
Q ss_pred eCCCCCCCceeEEEEEEccccCCC--CCCCCCCCCeeEEcccCCCCCccceEEEEEEEEee
Q 003882 123 DREIVGRDDYIGKVVFDMNEVPTR--VPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGT 181 (789)
Q Consensus 123 d~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 181 (789)
|++.++++++||++.++|.++..+ ... ..|++|+. .|.|++.+.+..
T Consensus 82 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~-----~~w~~L~~-------~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIGPDDFVANCTISFEDLIQRGSGSF-----DLWVDLEP-------QGKLHVKIELKG 130 (132)
T ss_pred eCCCCCCCceEEEEEEEhHHhcccCCCcc-----cEEEEccC-------CcEEEEEEEEec
Confidence 999988999999999999999973 333 39999972 589999988764
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.4e-17 Score=147.94 Aligned_cols=104 Identities=22% Similarity=0.382 Sum_probs=91.3
Q ss_pred CccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC---CEEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEe
Q 003882 379 PIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG---LKWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVFD 452 (789)
Q Consensus 379 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d 452 (789)
..|.|.|+|++|+||+.++ ..|.+||||++.+. .+..||++++++.||.|||.|.|.+... ...|.|+|||
T Consensus 14 ~~~~L~V~v~~a~~L~~~d---~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d 90 (124)
T cd08387 14 DMGILNVKLIQARNLQPRD---FSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYD 90 (124)
T ss_pred CCCEEEEEEEEeeCCCCCC---CCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEE
Confidence 3479999999999999874 45789999999983 4569999999999999999999998753 5689999999
Q ss_pred CCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 453 NCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 453 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
++.++ ++++||++.|+|+++..++..+.||+|.
T Consensus 91 ~~~~~-----~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 91 FDQFS-----RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CCCCC-----CCceeEEEEEecccccCCCCcceEEECc
Confidence 99875 7899999999999999888889999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.5e-18 Score=157.09 Aligned_cols=95 Identities=26% Similarity=0.394 Sum_probs=83.1
Q ss_pred EEEEEEEEccCCCCCccCC-----------CCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC--CceEEE
Q 003882 382 ILEVGILSAQGLLPMKTRD-----------GRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP--CTVITL 448 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~-----------~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~--~~~l~v 448 (789)
.|.|+|++|++|+.+|... ..+.+||||+|.++++..||++++++.||+|||.|.|++..+ ...|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~ 80 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI 80 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence 3789999999999987431 235789999999999999999999999999999999998654 569999
Q ss_pred EEEeCCCCCCCCCCCCCccEEEEEECcccccCc
Q 003882 449 GVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADR 481 (789)
Q Consensus 449 ~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 481 (789)
+|||+|..+ +|++||++.|+++++...+
T Consensus 81 ~v~D~d~~~-----~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 81 QIRDWDRVG-----NDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEECCCCC-----CCCEEEEEEEeHHHhccCC
Confidence 999999876 8999999999999987643
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.2e-17 Score=149.42 Aligned_cols=119 Identities=21% Similarity=0.253 Sum_probs=102.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eeeeecccc-CCCCCeeccEEEEEccCCC----CceEEEEEEeCCCCC
Q 003882 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-YKGKTRHFE-KKSNPEWKQVFAFSKEKIQ----SSVLEVFVRDREIVG 128 (789)
Q Consensus 55 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~T~~~~-~t~nP~wne~f~f~~~~~~----~~~l~v~V~d~~~~~ 128 (789)
.|.|+|++|++|+..+..+.+||||+|++++ ++++|+++. ++.||.|||+|.|.+.... ...|.|+|||++.++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~ 80 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL 80 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence 3889999999999998889999999999998 788999975 5899999999999987653 689999999999988
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEE
Q 003882 129 RDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVML 175 (789)
Q Consensus 129 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l 175 (789)
++++||++.+++.++......+......||+|..+.| +..|.|++
T Consensus 81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g--~~~G~~~~ 125 (125)
T cd04051 81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSG--KPQGVLNF 125 (125)
T ss_pred CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCC--CcCeEEeC
Confidence 9999999999999999876543234458999998764 57888864
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.2e-17 Score=143.56 Aligned_cols=96 Identities=22% Similarity=0.322 Sum_probs=84.1
Q ss_pred cEEEEEEEEccCCCCCccCC-CCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC--CceEEEEEEeCCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRD-GRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP--CTVITLGVFDNCHLG 457 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~-~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~--~~~l~v~v~d~~~~~ 457 (789)
|.|.|+|++|+||++.+... .++.+||||+|+++++.+||+++++++||+|||.|.|.+.+. ...|.|+|||++..+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 78999999999999876421 224689999999999999999999999999999999998753 458999999999876
Q ss_pred CCCCCCCCccEEEEEECcccccCc
Q 003882 458 GSGTKPDSRIGKVRIRLSTLEADR 481 (789)
Q Consensus 458 ~~~~~~d~~lG~~~i~l~~l~~~~ 481 (789)
.|++||++.++|++|..+.
T Consensus 81 -----~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 -----FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred -----CCcceEEEEEEHHHHHhhC
Confidence 8999999999999998654
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=147.86 Aligned_cols=118 Identities=25% Similarity=0.353 Sum_probs=101.0
Q ss_pred ccEEEEEEEEccCCCCCccCC-------CCCCcCcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCCceEEEEEE
Q 003882 380 IGILEVGILSAQGLLPMKTRD-------GRGTTDAYCVAKYGLKW-VRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVF 451 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~-------~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~ 451 (789)
.|.|+|+|++|+||...+... +.+.+||||++.++++. .+|++++++.||.|||.|.|.+. ....|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence 389999999999999875410 13689999999998865 79999999999999999999997 4678999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECccccc--CceEeeeEeeeecCCCCCccceEEEEEEEEee
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEA--DRIYTHSYPLLVLNPSGVKKMGELQLAVRFTC 511 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 511 (789)
|++..+ .+++||++.++|+++.. +...+.|++|. +.|+|+|++.|..
T Consensus 82 d~~~~~-----~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIG-----PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred eCCCCC-----CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 998765 78999999999999987 56679999995 3599999998764
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=146.78 Aligned_cols=120 Identities=23% Similarity=0.304 Sum_probs=100.3
Q ss_pred eeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC--eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCC
Q 003882 53 MFYLYVRVEKARDLPTNP-VSGSCDPYVEVKLGN--YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGR 129 (789)
Q Consensus 53 ~~~L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~--~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~ 129 (789)
+|.|.|+|++|+||+..+ ..+.+||||++++++ ..++|+++.++.||.|||.|.|.+.. ..+.|.|+|||++..++
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~-~~~~l~~~v~d~~~~~~ 79 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS-LTEPLNLTVYDFNDKRK 79 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC-CCCEEEEEEEecCCCCC
Confidence 478999999999999655 356799999999998 68899999999999999999999874 36899999999999889
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 130 DDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 130 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
+++||++.+++.++......+ ..|+.+.. . ++..|+|.+++.|.
T Consensus 80 d~~iG~~~~~l~~l~~~~~~~----~~~~~~~~-~--~k~~G~i~~~l~~~ 123 (124)
T cd04044 80 DKLIGTAEFDLSSLLQNPEQE----NLTKNLLR-N--GKPVGELNYDLRFF 123 (124)
T ss_pred CceeEEEEEEHHHhccCcccc----Ccchhhhc-C--CccceEEEEEEEeC
Confidence 999999999999999765432 13444542 2 24689999999875
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-17 Score=153.72 Aligned_cols=118 Identities=28% Similarity=0.375 Sum_probs=100.0
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK-- 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~-- 111 (789)
|.+.++++|+... ..|.|+|++|+||+..+..|.+||||++++.+ .+++|+++++|.||+|||+|.|.+..
T Consensus 2 G~l~~~l~y~~~~--~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~ 79 (136)
T cd08404 2 GELLLSLCYQPTT--NRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEE 79 (136)
T ss_pred CeEEEEEEEeCCC--CeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHH
Confidence 4678999998876 89999999999999999899999999999854 25689999999999999999999853
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 165 (789)
.....|.|+|||++.++++++||++.+++.. . ..... .|+.|....+
T Consensus 80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~-~-~~~~~-----~w~~l~~~~~ 126 (136)
T cd08404 80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKA-S-GSGGH-----HWKEVCNPPR 126 (136)
T ss_pred hCCCEEEEEEEECCCCCCCccEEEEEECCcC-C-CchHH-----HHHHHHhCCC
Confidence 3456899999999999999999999999988 2 22222 8998876544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=145.56 Aligned_cols=120 Identities=23% Similarity=0.411 Sum_probs=100.2
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCC
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRD 130 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d 130 (789)
+.|+|+|++|++|+..+..+.+||||++.+.+ ..++|++++++.||.|||+|.|.+.......|.|+|||++..+++
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~ 80 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH 80 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence 36899999999999999889999999999875 357999999999999999999999775568999999999998899
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeec
Q 003882 131 DYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQ 182 (789)
Q Consensus 131 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 182 (789)
++||++.++|..+..... ......|++|.. .|.|.+.+.+...
T Consensus 81 ~~iG~~~i~l~~~~~~~~--~~~~~~w~~l~~-------~g~i~l~~~~~~~ 123 (126)
T cd04043 81 DLCGRASLKLDPKRFGDD--GLPREIWLDLDT-------QGRLLLRVSMEGE 123 (126)
T ss_pred ceEEEEEEecCHHHcCCC--CCCceEEEEcCC-------CCeEEEEEEEeee
Confidence 999999999998754320 112238999964 4788888877643
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.6e-17 Score=145.72 Aligned_cols=101 Identities=19% Similarity=0.326 Sum_probs=86.9
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCC--CceEEEEEEeC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVYDP--CTVITLGVFDN 453 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~--~~~l~v~v~d~ 453 (789)
+.|.|+|++|+||++++ .|.+||||++.+.. .+.||++++++.||.|||.|.|.+... ...|.|+|||.
T Consensus 12 ~~L~V~Vi~ar~L~~~~----~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~ 87 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN----SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNK 87 (119)
T ss_pred CEEEEEEEEEECCCCCC----CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECC
Confidence 59999999999999874 46899999999943 367999999999999999999998752 45789999998
Q ss_pred CCCCCCCCCCCCccEEEEEECcccccCceEeeeEee
Q 003882 454 CHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489 (789)
Q Consensus 454 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 489 (789)
+..+ ..+++||.+.|+|.++..+.....||.|
T Consensus 88 ~~~~----~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 88 LSKS----RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCc----CCCEEEEEEEecHHHhccCccccceEeC
Confidence 8753 2468999999999999888878999986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=146.04 Aligned_cols=103 Identities=27% Similarity=0.357 Sum_probs=90.4
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC---CEEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeC
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG---LKWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVFDN 453 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~ 453 (789)
.|.|.|+|++|+||+.++ ..+.+||||++.+. .+.+||++++++.||.|||.|.|.+... ...|.|+|||+
T Consensus 15 ~~~L~V~v~~a~~L~~~d---~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~ 91 (124)
T cd08385 15 SNQLTVGIIQAADLPAMD---MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDF 91 (124)
T ss_pred CCEEEEEEEEeeCCCCcc---CCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeC
Confidence 369999999999999874 35789999999984 3568999999999999999999998752 46899999999
Q ss_pred CCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 454 CHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 454 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
+.++ ++++||++.++|+++..+...+.|++|.
T Consensus 92 d~~~-----~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 92 DRFS-----KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCC-----CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 9875 7899999999999998888889999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-17 Score=152.25 Aligned_cols=116 Identities=25% Similarity=0.366 Sum_probs=98.3
Q ss_pred ccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccCC--C
Q 003882 41 ERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEKI--Q 113 (789)
Q Consensus 41 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~--~ 113 (789)
+++++.|+... +.|.|+|++|+||+..+..|.+||||+|++.+ .+++|+++++|.||+|||+|.|.+... .
T Consensus 2 i~~~l~y~~~~--~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~ 79 (133)
T cd08384 2 ILVSLMYNTQR--RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLA 79 (133)
T ss_pred EEEEEEEcCCC--CEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhC
Confidence 46889999977 99999999999999999889999999999964 357999999999999999999998543 4
Q ss_pred CceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC
Q 003882 114 SSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165 (789)
Q Consensus 114 ~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 165 (789)
...|.|+|||++..+++++||++.+++... +...+ +|+++....+
T Consensus 80 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~--~~~~~-----~W~~~l~~~~ 124 (133)
T cd08384 80 KKTLEITVWDKDIGKSNDYIGGLQLGINAK--GERLR-----HWLDCLKNPD 124 (133)
T ss_pred CCEEEEEEEeCCCCCCccEEEEEEEecCCC--CchHH-----HHHHHHhCCC
Confidence 578999999999988999999999999752 22222 8988866543
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=145.94 Aligned_cols=123 Identities=20% Similarity=0.371 Sum_probs=102.6
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKW-VRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGS 459 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~ 459 (789)
-.|.|.|++|+||+++ .||||.|.++++. .||+++.++.||.|||.|.|....+...|+|.||+.+... +
T Consensus 11 ~sL~v~V~EAk~Lp~~--------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~-~ 81 (146)
T cd04013 11 NSLKLWIIEAKGLPPK--------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKK-K 81 (146)
T ss_pred EEEEEEEEEccCCCCc--------CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcc-c
Confidence 4899999999999874 2799999999987 6999999999999999999988777789999998655321 1
Q ss_pred CCCCCCccEEEEEECcccccCceEeeeEeeeecCCCC-------CccceEEEEEEEEeec
Q 003882 460 GTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSG-------VKKMGELQLAVRFTCL 512 (789)
Q Consensus 460 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g-------~~~~G~i~l~~~f~~~ 512 (789)
...++.+||++.||+.++..+...+.||||...+... ....++|+++++|.+.
T Consensus 82 ~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 82 KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred cccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence 1126789999999999999999999999998765443 2345899999999875
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=149.24 Aligned_cols=110 Identities=26% Similarity=0.437 Sum_probs=93.4
Q ss_pred EEEEEEEeeCCCCCCCCC--------------CCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCC-CCceEEEE
Q 003882 56 LYVRVEKARDLPTNPVSG--------------SCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKI-QSSVLEVF 120 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g--------------~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~-~~~~l~v~ 120 (789)
|.|+|++|++|+.+|.++ .+||||+|.+++++.+|++++++.||+|||+|.|.+..+ ..+.|.|+
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~ 81 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ 81 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence 789999999999988543 689999999999999999999999999999999997432 35799999
Q ss_pred EEeCCCCCCCceeEEEEEEccccCCCCCCC--CCCCCeeEEcccCCC
Q 003882 121 VRDREIVGRDDYIGKVVFDMNEVPTRVPPD--SPLAPQWYRLEDRRD 165 (789)
Q Consensus 121 V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~--~~~~~~w~~L~~~~~ 165 (789)
|||++..++|++||.+.+++.++....... -...+.|+.|.....
T Consensus 82 v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~ 128 (151)
T cd04018 82 IRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPR 128 (151)
T ss_pred EEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcc
Confidence 999999999999999999999988754211 124569999987753
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-16 Score=145.09 Aligned_cols=120 Identities=27% Similarity=0.440 Sum_probs=97.6
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC--
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGS-- 459 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~-- 459 (789)
.|+|+|++|++|+..+ ..|.+||||+|.++++..+|++++++.||.|||.|.|.+..+...|.|+|||+|.....
T Consensus 2 ~L~V~vi~a~~L~~~d---~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~ 78 (127)
T cd04027 2 KISITVVCAQGLIAKD---KTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRL 78 (127)
T ss_pred eEEEEEEECcCCcCCC---CCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccc
Confidence 6899999999999874 45789999999999999999999999999999999999977777999999999852100
Q ss_pred ----CCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEE
Q 003882 460 ----GTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAV 507 (789)
Q Consensus 460 ----~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~ 507 (789)
....+++||.+.+++.++... ...||+|......+ +.+|+|.|++
T Consensus 79 ~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 79 KQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred ceeccccCCCcceEEEEEhHHccCC--CCeEEECccCCCCC-cEeEEEEEEC
Confidence 013689999999999998643 47899998554322 3479998863
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.1e-17 Score=150.36 Aligned_cols=102 Identities=24% Similarity=0.306 Sum_probs=87.3
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEe---------------C
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVY---------------D 441 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~---------------~ 441 (789)
.|.|+|++|+||+. ..|.+||||+|.+.+ +..+|+++++|+||+|||.|.|.+. +
T Consensus 1 kL~V~Vi~ArnL~~-----~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~ 75 (148)
T cd04010 1 KLSVRVIECSDLAL-----KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEED 75 (148)
T ss_pred CEEEEEEeCcCCCC-----CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCccc
Confidence 37899999999986 247899999999965 6789999999999999999999995 1
Q ss_pred -CCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccC-ceEeeeEeeeecC
Q 003882 442 -PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEAD-RIYTHSYPLLVLN 493 (789)
Q Consensus 442 -~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~ 493 (789)
....|.|.|||++..+ .|++||++.|++.++..+ .....||+|....
T Consensus 76 ~~~~~L~i~V~d~~~~~-----~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 76 AEKLELRVDLWHASMGG-----GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred ccEEEEEEEEEcCCCCC-----CCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 1357999999998865 889999999999999987 5679999996443
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.6e-17 Score=144.67 Aligned_cols=102 Identities=27% Similarity=0.428 Sum_probs=90.0
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCcc-ccEEEEEEeCC---CceEEEEEEeCCCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKW-NEQYTWEVYDP---CTVITLGVFDNCHLGG 458 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~w-ne~~~f~v~~~---~~~l~v~v~d~~~~~~ 458 (789)
|.|+|++|+||+.++. ..+.+||||++.++++.+||+++++++||.| ||.|.|.+... ...|.|+|||++.++
T Consensus 1 l~V~v~~a~~L~~~d~--~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~- 77 (110)
T cd08688 1 LKVRVVAARDLPVMDR--SSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS- 77 (110)
T ss_pred CEEEEEEEECCCcccc--CCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC-
Confidence 5799999999998753 2478999999999999999999999999999 99999999763 468999999999875
Q ss_pred CCCCCCCccEEEEEECccccc---CceEeeeEeeee
Q 003882 459 SGTKPDSRIGKVRIRLSTLEA---DRIYTHSYPLLV 491 (789)
Q Consensus 459 ~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~ 491 (789)
++++||++.+++.++.. +.....||+|.+
T Consensus 78 ----~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 78 ----ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred ----CCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 78999999999999987 456799999863
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=145.48 Aligned_cols=101 Identities=25% Similarity=0.351 Sum_probs=85.4
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeC----CCceEEEEEE
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVYD----PCTVITLGVF 451 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~v~ 451 (789)
|.|.|+|++|+||+.++ ..+.+||||+|.+.+ ...||++++++.||+|||.|.|.+.. ....|.|+||
T Consensus 16 ~~L~V~vi~a~~L~~~~---~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~ 92 (125)
T cd04031 16 SQLIVTVLQARDLPPRD---DGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVW 92 (125)
T ss_pred CEEEEEEEEecCCCCcC---CCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEE
Confidence 69999999999999874 347899999999854 57899999999999999999998754 2568999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
|++..+ .+++||++.++|++... .....||+|.
T Consensus 93 d~~~~~-----~~~~iG~~~i~l~~~~~-~~~~~W~~L~ 125 (125)
T cd04031 93 DYDRDG-----ENDFLGEVVIDLADALL-DDEPHWYPLQ 125 (125)
T ss_pred eCCCCC-----CCcEeeEEEEecccccc-cCCcceEECc
Confidence 999875 78999999999999432 2336899983
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-17 Score=152.00 Aligned_cols=119 Identities=21% Similarity=0.333 Sum_probs=99.4
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eeeeeccccCCCCCeeccEEEEEcc--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN------YKGKTRHFEKKSNPEWKQVFAFSKE-- 110 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~------~~~~T~~~~~t~nP~wne~f~f~~~-- 110 (789)
+...+++.|+... +.|.|+|++|+||+..+..|.+||||++++.+ .++||++++++.||+|||+|.|.+.
T Consensus 2 ~ei~~sL~Y~~~~--~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~ 79 (138)
T cd08408 2 PELLLGLEYNALT--GRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALF 79 (138)
T ss_pred CeEEEEeEEcCCC--CeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHH
Confidence 3568899999987 99999999999999999889999999999964 2469999999999999999999985
Q ss_pred CCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC
Q 003882 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165 (789)
Q Consensus 111 ~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 165 (789)
++....|.|.|||++.++++++||++.+++...-.+. .+ +|+.+....+
T Consensus 80 ~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~-~~-----hW~~~l~~~~ 128 (138)
T cd08408 80 QLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEE-EE-----HWNEMKESKG 128 (138)
T ss_pred HhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCchH-HH-----HHHHHHhCCC
Confidence 3456899999999999999999999999887543221 12 6887765443
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-16 Score=144.65 Aligned_cols=115 Identities=23% Similarity=0.373 Sum_probs=100.2
Q ss_pred EEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCC
Q 003882 387 ILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVFDNCHLGGSGTKP 463 (789)
Q Consensus 387 v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~~~~~~ 463 (789)
|++|+||+. ..+.+||||+|.+++..++|++++++.||+|||.|.|.+..+ ...|.|+|||++..+ +
T Consensus 2 vi~a~~L~~-----~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~-----~ 71 (127)
T cd08373 2 VVSLKNLPG-----LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG-----R 71 (127)
T ss_pred eEEeeCCcc-----cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC-----C
Confidence 689999986 247899999999999999999999999999999999999753 679999999999875 7
Q ss_pred CCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEeecC
Q 003882 464 DSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTCLS 513 (789)
Q Consensus 464 d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~ 513 (789)
|++||++.++++++..+.....|++|...+ +....|+|++++.|.|..
T Consensus 72 d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~--~~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 72 NRLIGSATVSLQDLVSEGLLEVTEPLLDSN--GRPTGATISLEVSYQPPD 119 (127)
T ss_pred CceEEEEEEEhhHcccCCceEEEEeCcCCC--CCcccEEEEEEEEEeCCC
Confidence 899999999999999888889999997543 333359999999998763
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=147.66 Aligned_cols=106 Identities=26% Similarity=0.400 Sum_probs=94.4
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------eeeeeccccCCCCCeeccEEEEEccC
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-------YKGKTRHFEKKSNPEWKQVFAFSKEK 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-------~~~~T~~~~~t~nP~wne~f~f~~~~ 111 (789)
|...++++|+... ..|.|+|++|++|+..+..+.+||||+|++.+ ..++|+++++|.||+|||+|.|.+..
T Consensus 3 G~l~~~l~y~~~~--~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~ 80 (133)
T cd04009 3 GVLTVKAYYRASE--QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPP 80 (133)
T ss_pred eEEEEEEEEcCCC--CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEech
Confidence 4678889998876 89999999999999998889999999999963 46799999999999999999999854
Q ss_pred C----CCceEEEEEEeCCCCCCCceeEEEEEEccccCCC
Q 003882 112 I----QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTR 146 (789)
Q Consensus 112 ~----~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~ 146 (789)
. ....|.|+|||++.++++++||++.++|.++..-
T Consensus 81 ~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 81 EQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred hhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 2 3578999999999998899999999999999854
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-17 Score=151.33 Aligned_cols=118 Identities=25% Similarity=0.392 Sum_probs=98.7
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEcc--C
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKE--K 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~--~ 111 (789)
|...+++.|+..+ +.|.|+|++|+||+..+..|.+||||+|++.+ .+++|++++++.||+|||+|.|.+. .
T Consensus 2 G~l~~sl~y~~~~--~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~ 79 (136)
T cd08405 2 GELLLSLCYNPTA--NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLER 79 (136)
T ss_pred cEEEEEEEEcCCC--CeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHH
Confidence 4678999999987 99999999999999988889999999999842 3569999999999999999999974 3
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 165 (789)
.....|.|+|||++.++++++||++.+++... +...+ .|+++....+
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~-----~w~~~~~~~~ 126 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELK-----HWKDMLSKPR 126 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHH-----HHHHHHhCCC
Confidence 34568999999999999999999999999876 22122 6776655443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=143.24 Aligned_cols=106 Identities=21% Similarity=0.262 Sum_probs=89.1
Q ss_pred EEEEEEEEEeecCCCCCCC-CCCCeEEEEEECC-----eEEeeecccCCCCCCccCceeEEEeeCC--CCCeEEEEEEEc
Q 003882 217 WYLRVNVIEAQDVEPLDKS-QLPQAFVEAQVGN-----QVLKTKLCPTRTTNPLWNEDLIFVAAEP--FEEQLVLTVENK 288 (789)
Q Consensus 217 ~~L~V~v~~ar~L~~~~~~-~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~l~i~V~d~ 288 (789)
+.|.|+|++|+||+..+.. +.+||||++++.. .++||+++++ +.||+|||+|.|.+... ....|.+.|||.
T Consensus 15 ~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 15 SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKG-TVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccC-CCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 4699999999999998875 8999999999962 3678999986 99999999999998543 456899999999
Q ss_pred cCCCCCCceEEEEEeccccccccCCCCCcceeEEcc
Q 003882 289 VTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLE 324 (789)
Q Consensus 289 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~ 324 (789)
+..+++++||++.|+|+++.-. +......+||+|.
T Consensus 94 ~~~~~~~~lG~~~i~L~~~~~~-~~~~~~~~W~~l~ 128 (128)
T cd08392 94 RTLKRRVFLGEVLIPLADWDFE-DTDSQRFLWYPLN 128 (128)
T ss_pred CCCcCcceEEEEEEEcCCcccC-CCCccccceEECc
Confidence 9889999999999999988421 2244578999973
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-16 Score=144.61 Aligned_cols=104 Identities=22% Similarity=0.288 Sum_probs=89.7
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEE
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG-----LKWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVF 451 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~ 451 (789)
.+.|+|+|++|+||+..+ ..+.+||||+|.+. ...+||++++++.||+|||.|.|.+... ...|.|.||
T Consensus 15 ~~~L~V~vi~a~~L~~~~---~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~ 91 (127)
T cd04030 15 RQKLIVTVHKCRNLPPCD---SSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVK 91 (127)
T ss_pred CCEEEEEEEEEECCCCcc---CCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence 369999999999999874 35789999999984 4679999999999999999999998642 468999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEee
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 489 (789)
|.+.+. ...+++||.+.|+|.++..++....||+|
T Consensus 92 ~~~~~~---~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 92 NSKSFL---SREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred ECCccc---CCCCceEEEEEEecccccccCCccceEEC
Confidence 988741 12789999999999999888888999997
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-16 Score=142.63 Aligned_cols=102 Identities=24% Similarity=0.255 Sum_probs=85.7
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC---CEEEeeccccCCCCCccccEEEEE-EeC---CCceEEEEEEeC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG---LKWVRTRTLVDNFNPKWNEQYTWE-VYD---PCTVITLGVFDN 453 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~f~-v~~---~~~~l~v~v~d~ 453 (789)
+.|+|+|++|+||+..+. ..+.+||||+|.+. .++.||++++++.||.|||.|.|. +.. ....|.|+|||+
T Consensus 16 ~~L~V~Vi~a~~L~~~~~--~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~ 93 (128)
T cd08388 16 KALLVNIIECRDLPAMDE--QSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF 93 (128)
T ss_pred CEEEEEEEEeECCCCCCC--CCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence 699999999999998742 13789999999884 456899999999999999999994 432 245799999999
Q ss_pred CCCCCCCCCCCCccEEEEEECcccccC--ceEeeeEee
Q 003882 454 CHLGGSGTKPDSRIGKVRIRLSTLEAD--RIYTHSYPL 489 (789)
Q Consensus 454 ~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L 489 (789)
|.++ +|++||++.|+|+++... +....|.+|
T Consensus 94 d~~~-----~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 94 DRYS-----RDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred CCCC-----CCceeEEEEEeccccCCCCCceEEEEEec
Confidence 9875 899999999999998654 678888886
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.7e-17 Score=150.32 Aligned_cols=118 Identities=20% Similarity=0.272 Sum_probs=98.6
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEcc--C
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKE--K 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~--~ 111 (789)
|..++++.|+... +.|.|+|++|+||+..+ .+.+||||+|.+.+ .+++|++++++.||+|||+|.|.+. +
T Consensus 2 G~i~~sl~y~~~~--~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~ 78 (137)
T cd08409 2 GDIQISLTYNPTL--NRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQ 78 (137)
T ss_pred cEEEEEEEECCCC--CeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHH
Confidence 4678999999977 89999999999999988 78899999999875 3569999999999999999999984 3
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
+....|.|+|||++..+++++||++.+.......+...+ +|..+....
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~-----hW~~~~~~p 126 (137)
T cd08409 79 LDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELE-----HWNDMLSKP 126 (137)
T ss_pred hCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHH-----HHHHHHhCC
Confidence 455799999999999899999999999866555443333 676665543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.6e-16 Score=172.19 Aligned_cols=444 Identities=16% Similarity=0.177 Sum_probs=252.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccC-CCCCeeccEEEEEc-----cCCCCceEEEEEEeCCCC
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEK-KSNPEWKQVFAFSK-----EKIQSSVLEVFVRDREIV 127 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~-t~nP~wne~f~f~~-----~~~~~~~l~v~V~d~~~~ 127 (789)
+.+.|--..-+|...........|-+.+.++++..++..|.+ -.||.++..|.+-+ .+.-...+.++|.|.+.+
T Consensus 363 ~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y~ppl~akvvd~~~f 442 (1105)
T KOG1326|consen 363 GKAELLMWGLRNPKKSGMASTFSPALLVEFGGERVSSFSIFNRKKNPNFPSRVLGRLVILPDEELYMPPLNAKVVDLRQF 442 (1105)
T ss_pred eeeehhhhhhcccccccccccCCcceeEeeCCceEeeeeehhhhhCCCCceeEEEEEEeccchHhhCccceeEEEecccc
Confidence 444444445566655555566789999999998877766655 45999997776653 122357899999999999
Q ss_pred CCCceeEEEEEE-ccccCCCCCCCCCCCC-----------------------eeEEc-----------------ccCCCC
Q 003882 128 GRDDYIGKVVFD-MNEVPTRVPPDSPLAP-----------------------QWYRL-----------------EDRRDD 166 (789)
Q Consensus 128 ~~d~~lG~~~i~-l~~l~~~~~~~~~~~~-----------------------~w~~L-----------------~~~~~~ 166 (789)
+....+|.|.+. +.....+......+.+ .|++. ....+.
T Consensus 443 g~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~ 522 (1105)
T KOG1326|consen 443 GRMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRHCNSSTLPASPHEDEEEREVDWWGKFYPSAEE 522 (1105)
T ss_pred cceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhhccccCCCCCccccccceehhhhhhccccccc
Confidence 999999999985 4444332111100000 01111 110000
Q ss_pred C------ccceEEEEEEEEeecCCCc---C--CccCCCCCcc-------cC---------------------CCcccccc
Q 003882 167 R------KVKGEVMLAVWIGTQADEA---F--PEAWHSDAAT-------VE---------------------GEGVFNIR 207 (789)
Q Consensus 167 ~------~~~G~l~l~~~~~~~~d~~---~--~~~~~~~~~~-------~~---------------------~~~~~~~~ 207 (789)
+ ..++...+.++ ...++. + .+.|..+... .. +......+
T Consensus 523 ~~k~~~~~~K~~~~LKiy--n~ele~v~ef~~l~D~~~~f~l~rG~~~~e~~e~~Ivg~fKgl~rIyp~~~~~~~p~~pr 600 (1105)
T KOG1326|consen 523 NAKWEVYEHKINVTLKIY--NMELEMVAEFRGLQDWAVTFKLYRGKEGLECLEQQIVGEFKGLFRIYPVPRNPSSPAPPR 600 (1105)
T ss_pred cccccccccccceEEEEe--hhhhhhHHHHhhhhhccceeEeeeccccCCCcccchhhhhhcceeeecCCCccCCCCChh
Confidence 0 00111111111 111110 0 0111111000 00 00000111
Q ss_pred cc---ccccCccEEEEEEEEEeecCCCCCCCCCCCeEEEEEECCeE--EeeecccCCCCCCccCceeEEEeeCCCCCeEE
Q 003882 208 SK---VYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQV--LKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLV 282 (789)
Q Consensus 208 ~~---~~~~~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~~~--~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~ 282 (789)
.. ....|....++|.|++|-+|.+.|.+|.+||||.+.+|++. -+...+.+ |.||+|++.|.+....+....++
T Consensus 601 ~~~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~-tlnPVfgkmfel~~~lp~ek~l~ 679 (1105)
T KOG1326|consen 601 HFLDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPN-TLNPVFGKMFELECLLPFEKDLI 679 (1105)
T ss_pred hhhcccccCcceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcC-CCCcHHHHHHHhhcccchhhcce
Confidence 00 01136666799999999999999999999999999999876 55667776 99999999999999888899999
Q ss_pred EEEEEccCCCCCCceEEEEEeccc-cccccCCCCC---------cceeEEccccCcccc-----hhcccccccccceEEE
Q 003882 283 LTVENKVTPAKDEPLGRLRLSLNV-IERRLDHRPV---------HSKWFNLEKFGFGAL-----ELDKRHELKFSSRIHL 347 (789)
Q Consensus 283 i~V~d~d~~~~d~~iG~~~i~l~~-l~~~~~~~~~---------~~~w~~L~~~~~~~~-----~g~~~~~~~~~G~i~l 347 (789)
++|||+|..+.|+.||+..++|.+ +.+..+.+.. ...|..-.++++-.. .+.. .-.+.+.. .
T Consensus 680 v~vyd~D~~~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~--~P~~~~e~-~ 756 (1105)
T KOG1326|consen 680 VEVYDHDLEAQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIP--RPYYSYEV-S 756 (1105)
T ss_pred eEEEEeecccccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCC--CCeecCCc-c
Confidence 999999999999999999999875 3333222221 334554443321000 0000 00000000 1
Q ss_pred EEEEcCcccc-------------------------------cCCcc----cccCCC---Ccccccc--------------
Q 003882 348 RVCLEGAYHV-------------------------------MDEST----MYISDQ---RPTARQL-------------- 375 (789)
Q Consensus 348 ~i~~~~~~~~-------------------------------~d~~~----~~~~d~---~~~~~~~-------------- 375 (789)
.+.+.|.... .-+.. ....+. .....++
T Consensus 757 ~i~~~g~~~~~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl 836 (1105)
T KOG1326|consen 757 AIKWKGESDIYDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPL 836 (1105)
T ss_pred eEEecChhhhhcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCC
Confidence 1111110000 00000 000000 0000011
Q ss_pred ----cCCCccEEEEEEEEccCCCCCccC-CCCCCcCcEEEEEEC-C--EEEeeccccCCC----CCccccEEEEEEe---
Q 003882 376 ----WKQPIGILEVGILSAQGLLPMKTR-DGRGTTDAYCVAKYG-L--KWVRTRTLVDNF----NPKWNEQYTWEVY--- 440 (789)
Q Consensus 376 ----~~~~~g~l~v~v~~a~~L~~~~~~-~~~~~~dpyv~v~~~-~--~~~~T~~~~~t~----~P~wne~~~f~v~--- 440 (789)
..+..-.++|.|-.-.+....+.. .+...+|-||.=.+- . .+.+|.+.++++ |-.|.-.|-|.-.
T Consensus 837 ~itpr~~~~~~lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gdee~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae 916 (1105)
T KOG1326|consen 837 NITPRKPKKYELRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDEEEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAE 916 (1105)
T ss_pred CCCCCChhheeEEEEEeeccceeecCccceeeeccceEEecccccchhhhcccceeeeeccCCcccceeeecccccchHh
Confidence 122345788888777776654432 124468999998763 3 457888877654 5666443333110
Q ss_pred ---------------C----CCceEEEEEEeCCCCCCCCCCCCCccEEEEEECccccc----------------------
Q 003882 441 ---------------D----PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEA---------------------- 479 (789)
Q Consensus 441 ---------------~----~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~---------------------- 479 (789)
+ .-..|.|+|||.|.++ +|++||...++|+++..
T Consensus 917 ~~~vi~kke~~ws~dete~k~p~rl~iqiWD~d~fs-----~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe 991 (1105)
T KOG1326|consen 917 QLCVIAKKEYSWSLDETEFKIPARLIIQIWDNDKFS-----KDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFE 991 (1105)
T ss_pred hHhhhhhhhhccccccccccCchheEEEecccCccC-----hhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhh
Confidence 0 1246999999999997 99999999999998652
Q ss_pred CceEeeeEeeeecCCCCCccceEEEEEEE
Q 003882 480 DRIYTHSYPLLVLNPSGVKKMGELQLAVR 508 (789)
Q Consensus 480 ~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 508 (789)
.+.+..|||+.........-+|++++++.
T Consensus 992 ~k~v~GWwP~~a~~~~~~~l~Gkvem~le 1020 (1105)
T KOG1326|consen 992 QKTVKGWWPCQAEEGDAKVLAGKVEMSLE 1020 (1105)
T ss_pred cccccccceeeecCCCcceecceeeeehh
Confidence 23567999998764322233799888764
|
|
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.2e-17 Score=149.42 Aligned_cols=119 Identities=19% Similarity=0.331 Sum_probs=97.1
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK-- 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~-- 111 (789)
|...+++.|.... +.|.|+|++|+||+..+..|.+||||+|++.+ .+++|+++++|.||+|||+|.|.+..
T Consensus 1 G~i~~~l~y~~~~--~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~ 78 (135)
T cd08410 1 GELLLSLNYLPSA--GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEE 78 (135)
T ss_pred CcEEEEEEECCCC--CeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHH
Confidence 3568899999877 99999999999999999889999999999843 35799999999999999999999843
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 165 (789)
.....|.|+|||++..+++++||++.|.......+. ..+|+.|....+
T Consensus 79 l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~~------~~~W~~l~~~~~ 126 (135)
T cd08410 79 LENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSE------TNHWRRMLNSQR 126 (135)
T ss_pred hCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCchH------HHHHHHHHhCCC
Confidence 334579999999999999999999986643332211 127888877654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.7e-16 Score=143.59 Aligned_cols=118 Identities=19% Similarity=0.336 Sum_probs=96.7
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC----------CceEEEEEE
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP----------CTVITLGVF 451 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~----------~~~l~v~v~ 451 (789)
.|+|+|++|++|+.++ ..|.+||||+|.++++..||+++++|+||.|||.|.|.+... ...|.|+||
T Consensus 2 ~l~v~V~~a~~L~~~d---~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAAD---KSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCCC---CCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 6899999999999874 457899999999999999999999999999999999986431 257999999
Q ss_pred eCCCCCCCCCCCCCccEEEEE-ECccccc---CceEeeeEeeeecCCCCCccceEEEEEEEEee
Q 003882 452 DNCHLGGSGTKPDSRIGKVRI-RLSTLEA---DRIYTHSYPLLVLNPSGVKKMGELQLAVRFTC 511 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i-~l~~l~~---~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 511 (789)
|++..+ +|++||++.+ ++..+.. +.....|++|... | ...|+|.|++.+.+
T Consensus 79 d~d~~~-----~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~---~-~~~Geil~~~~~~~ 133 (135)
T cd04017 79 DQDSVG-----KDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG---G-QSAGELLAAFELIE 133 (135)
T ss_pred eCcCCC-----CCccceEEEeeeeeecccCCCCCCCceEEEeecC---C-CchhheeEEeEEEE
Confidence 999875 7899999987 4444442 3566899999632 2 25699999988764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.68 E-value=7e-16 Score=141.71 Aligned_cols=118 Identities=24% Similarity=0.369 Sum_probs=98.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------------eeeeeccccCCCCCee-ccEEEEEccCCCCceEEEE
Q 003882 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-------------YKGKTRHFEKKSNPEW-KQVFAFSKEKIQSSVLEVF 120 (789)
Q Consensus 55 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-------------~~~~T~~~~~t~nP~w-ne~f~f~~~~~~~~~l~v~ 120 (789)
...|++++|+||+ ++..|++||||++.+.+ ++++|+++++|.||+| ||+|.|.+.. .+.|.|+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~ 78 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIE 78 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEE
Confidence 3679999999998 67789999999999963 3689999999999999 9999999853 4789999
Q ss_pred EEeCCCCCC---CceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEE
Q 003882 121 VRDREIVGR---DDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAV 177 (789)
Q Consensus 121 V~d~~~~~~---d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~ 177 (789)
|||++..++ +++||++.+++.++....... ....||+|+.....+...|+|.+.+
T Consensus 79 V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~--~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 79 VKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIG--DQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEecCCCCCccCCceEEEEEEEHHHhcccccCC--ceEEEEECCcCCCCCcEEEEEEEEe
Confidence 999876443 799999999999998764322 2448999998876678899998865
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-16 Score=147.00 Aligned_cols=100 Identities=28% Similarity=0.529 Sum_probs=88.2
Q ss_pred CceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-----------------------------eeeeccccCCCCCee
Q 003882 51 EQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-----------------------------KGKTRHFEKKSNPEW 101 (789)
Q Consensus 51 ~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-----------------------------~~~T~~~~~t~nP~w 101 (789)
.+.+.|.|+|++|+||...|..|.+||||+|.+.+. .++|+++.+|.||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 356899999999999999999999999999999642 368999999999999
Q ss_pred ccEEEEEccCCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEc
Q 003882 102 KQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160 (789)
Q Consensus 102 ne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 160 (789)
||+|.|.+..+....|.|+|||++ +++||++.+++.++... ..+ .||+|
T Consensus 105 nE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~-~~d-----~W~~L 153 (153)
T cd08676 105 NETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSC-GLD-----SWFKL 153 (153)
T ss_pred ccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCC-CCC-----CeEeC
Confidence 999999997766789999999997 88999999999999843 233 99987
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.2e-16 Score=141.04 Aligned_cols=94 Identities=26% Similarity=0.279 Sum_probs=83.7
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccC-CCCceEEEEEEeCCCCCCC
Q 003882 52 QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEK-IQSSVLEVFVRDREIVGRD 130 (789)
Q Consensus 52 ~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~-~~~~~l~v~V~d~~~~~~d 130 (789)
.++.|.|+|++|++|+. +..+.+||||+|+++++++||++++++.||+|||+|.|.... .....|.|+|||++.+++|
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~d 104 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDD 104 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCC
Confidence 45899999999999984 567889999999999999999999999999999999997533 3468999999999999999
Q ss_pred ceeEEEEEEccccCCC
Q 003882 131 DYIGKVVFDMNEVPTR 146 (789)
Q Consensus 131 ~~lG~~~i~l~~l~~~ 146 (789)
++||++.++|.....+
T Consensus 105 d~IG~~~i~l~~~~~~ 120 (127)
T cd04032 105 DLLGTCSVVPEAGVHE 120 (127)
T ss_pred CeeEEEEEEecCCcee
Confidence 9999999999976643
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-16 Score=146.15 Aligned_cols=103 Identities=30% Similarity=0.532 Sum_probs=91.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEC----CeeeeeccccCCCCCeeccEEEEEccCC---------------CCce
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLG----NYKGKTRHFEKKSNPEWKQVFAFSKEKI---------------QSSV 116 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~----~~~~~T~~~~~t~nP~wne~f~f~~~~~---------------~~~~ 116 (789)
|.|+|++|+||+.+ ..|.+||||+|+++ .+.++|+++.++.||.|||+|.|.+... ....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 78899999999998 6788999999999999999999998654 4678
Q ss_pred EEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 117 LEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 117 l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
|.|+|||++..++++|||++.+++.++....... .||+|++..
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~-----~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQ-----AWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCccc-----ceEecCCcC
Confidence 9999999999889999999999999998654444 999999875
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.8e-16 Score=142.46 Aligned_cols=103 Identities=25% Similarity=0.339 Sum_probs=89.5
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE---CCEEEeeccccCCCCCccccEEEEEEeC----CCceEEEEEEe
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY---GLKWVRTRTLVDNFNPKWNEQYTWEVYD----PCTVITLGVFD 452 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---~~~~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~v~d 452 (789)
.+.|.|+|++|+||+.++ ..+.+||||++.+ +++..+|++++++.||.|||.|.|.+.. ....|.|+|||
T Consensus 15 ~~~L~v~v~~a~~L~~~d---~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d 91 (125)
T cd08386 15 ESTLTLKILKAVELPAKD---FSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLD 91 (125)
T ss_pred CCEEEEEEEEecCCCCcc---CCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEe
Confidence 369999999999999874 3578999999998 4567999999999999999999998542 24579999999
Q ss_pred CCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 453 NCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 453 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
++..+ ++++||++.++++++..+.....|++|.
T Consensus 92 ~d~~~-----~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 92 YDRFS-----RNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCCCc-----CCcEeeEEEEecccccCCCCcceEEecC
Confidence 99875 7899999999999999888889999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-16 Score=142.78 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=89.5
Q ss_pred CCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE--C----CEEEeeccccCCCCCccccEEEEEEeC---CCceEE
Q 003882 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY--G----LKWVRTRTLVDNFNPKWNEQYTWEVYD---PCTVIT 447 (789)
Q Consensus 377 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~----~~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~ 447 (789)
.+..+.|.|.|++|+||++++ ..+.+||||++.+ + ..+.||+++++++||+|||.|.|++.. ....|.
T Consensus 10 ~~~~~~L~V~V~~arnL~~~~---~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~ 86 (124)
T cd08680 10 DSGDSSLVISVEQLRNLSALS---IPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQ 86 (124)
T ss_pred CCCCCEEEEEEeEecCCcccc---cCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEE
Confidence 444579999999999999874 4578999999998 2 247999999999999999999999875 367999
Q ss_pred EEEEeCCCCCCCCCCCCCccEEEEEECcccccC-ceEeeeEee
Q 003882 448 LGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEAD-RIYTHSYPL 489 (789)
Q Consensus 448 v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L 489 (789)
|+|||.+..+ ++++||.+.|+|+++... ....+||+|
T Consensus 87 ~~V~~~~~~~-----~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 87 VDVCSVGPDQ-----QEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEEeCCCCC-----ceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999999875 789999999999999654 357889875
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.1e-17 Score=149.72 Aligned_cols=117 Identities=29% Similarity=0.355 Sum_probs=98.2
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK-- 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~-- 111 (789)
|...+++.|.... +.|.|+|++|++|+..+..|.+||||+|++.+ .+++|++++++.||+|||+|.|.+..
T Consensus 2 G~l~~~l~y~~~~--~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 79 (136)
T cd08402 2 GDICFSLRYVPTA--GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQ 79 (136)
T ss_pred cEEEEEeEEcCCC--CeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHH
Confidence 4678899999987 99999999999999999899999999999953 35689999999999999999999753
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
.....|.|+|||++.++++++||++.+++.... ... ..|+++....
T Consensus 80 l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~--~~~-----~~W~~~~~~~ 125 (136)
T cd08402 80 IQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATG--AEL-----RHWSDMLASP 125 (136)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEECCccCC--hHH-----HHHHHHHhCC
Confidence 234589999999999999999999999997642 222 2777776554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-16 Score=142.94 Aligned_cols=106 Identities=23% Similarity=0.319 Sum_probs=94.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccC-CCCCeeccEEEEEccCC---CCceEEEEEEeCCCCCC
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEK-KSNPEWKQVFAFSKEKI---QSSVLEVFVRDREIVGR 129 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~-t~nP~wne~f~f~~~~~---~~~~l~v~V~d~~~~~~ 129 (789)
|.|.|+|++|++|+..+..+.+||||+|+++++.++|+++.+ +.||+|||+|.|.+... ....|.|+|||++.+++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~ 80 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD 80 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence 579999999999999888889999999999998889998875 89999999999999765 35789999999999989
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 130 DDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 130 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
+++||++.+++.++..+...+ .|+.|.+..
T Consensus 81 d~~iG~~~i~l~~l~~~~~~~-----~~~~l~p~~ 110 (124)
T cd04049 81 DDFIGEATIHLKGLFEEGVEP-----GTAELVPAK 110 (124)
T ss_pred CCeEEEEEEEhHHhhhCCCCc-----CceEeeccc
Confidence 999999999999998865554 899998754
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.9e-16 Score=141.55 Aligned_cols=118 Identities=24% Similarity=0.337 Sum_probs=95.4
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEEC-CEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG-LKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGT 461 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~ 461 (789)
|+|+|++|+||+.++ ..+.+||||++.++ .+.+||+++++++||.|||.|.|.+.. ...|.|+|||++.++ .
T Consensus 2 l~v~v~~A~~L~~~~---~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~---~ 74 (123)
T cd08382 2 VRLTVLCADGLAKRD---LFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFK---K 74 (123)
T ss_pred eEEEEEEecCCCccC---CCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCC---C
Confidence 789999999999874 35789999999996 678999999999999999999999975 789999999998864 1
Q ss_pred CCCCccEEEEEECcccccCc-eEeeeEeeeecCCC-CCccceEEEEEE
Q 003882 462 KPDSRIGKVRIRLSTLEADR-IYTHSYPLLVLNPS-GVKKMGELQLAV 507 (789)
Q Consensus 462 ~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~-g~~~~G~i~l~~ 507 (789)
..|++||++.++++++.... ....|++|...... +....|+|.+++
T Consensus 75 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 75 KDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 12689999999999987544 33679999655432 222368888764
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.8e-16 Score=141.53 Aligned_cols=103 Identities=22% Similarity=0.348 Sum_probs=89.0
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC--C---EEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEE
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG--L---KWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVF 451 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~ 451 (789)
.|.|.|+|++|+||+.++. ..+.+||||+|.+. + ...+|++++++.||+|||.|.|.+... ...|.|+||
T Consensus 13 ~~~L~V~v~~a~~L~~~~~--~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~ 90 (123)
T cd08521 13 TGSLEVHIKECRNLAYADE--KKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW 90 (123)
T ss_pred CCEEEEEEEEecCCCCcCC--CCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence 4799999999999998751 35789999999883 1 468999999999999999999998752 568999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEee
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 489 (789)
|++..+ ++++||.+.++|+++..+.....||+|
T Consensus 91 d~~~~~-----~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 91 HHDRFG-----RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred eCCCCc-----CCceeeEEEEecccccccCCCccEEEC
Confidence 999875 789999999999999877778999986
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-16 Score=144.21 Aligned_cols=116 Identities=29% Similarity=0.485 Sum_probs=100.8
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccCC-
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEKI- 112 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~- 112 (789)
|.+.++++|+. +.|.|+|++|+||+..+..+.+||||+|.+.+ ..++|+++.++.||.|||+|.|.+...
T Consensus 2 g~~~~~~~~~~----~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~ 77 (131)
T cd04026 2 GRIYLKISVKD----NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD 77 (131)
T ss_pred cEEEEEEEECC----CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh
Confidence 45677888877 67999999999999988888999999999974 578999999999999999999998653
Q ss_pred CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 113 ~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
....|.|+|||++..+++++||++.++++++... ..+ .||+|.+..
T Consensus 78 ~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~-----~w~~L~~~~ 123 (131)
T cd04026 78 KDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVD-----GWYKLLNQE 123 (131)
T ss_pred cCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccC-----ceEECcCcc
Confidence 3578999999999988999999999999999865 333 899998764
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-16 Score=177.26 Aligned_cols=127 Identities=23% Similarity=0.353 Sum_probs=109.6
Q ss_pred cEEEEEEEEccCCCCCccC------------------------------CC---------CCCcCcEEEEEECCE-EEee
Q 003882 381 GILEVGILSAQGLLPMKTR------------------------------DG---------RGTTDAYCVAKYGLK-WVRT 420 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~------------------------------~~---------~~~~dpyv~v~~~~~-~~~T 420 (789)
|.|.++|++|++|++||.. .+ .+++||||+|.++++ ..||
T Consensus 14 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~RT 93 (868)
T PLN03008 14 GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLART 93 (868)
T ss_pred cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceeeE
Confidence 7899999999999874431 01 357899999999876 5799
Q ss_pred ccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccc
Q 003882 421 RTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKM 500 (789)
Q Consensus 421 ~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~ 500 (789)
++++++.||+|||.|.|.+.++...|+|+|+|+|.++ +++||.+.|||.++..|...+.|++|.....+..+..
T Consensus 94 rVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g------aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~ 167 (868)
T PLN03008 94 RVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG------AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAE 167 (868)
T ss_pred EeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC------CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCC
Confidence 9999999999999999999998889999999999984 5899999999999999999999999987765555567
Q ss_pred eEEEEEEEEeecC
Q 003882 501 GELQLAVRFTCLS 513 (789)
Q Consensus 501 G~i~l~~~f~~~~ 513 (789)
|+|+|+++|.|..
T Consensus 168 ~kl~v~lqf~pv~ 180 (868)
T PLN03008 168 TAIFIDMKFTPFD 180 (868)
T ss_pred cEEEEEEEEEEcc
Confidence 8999999998763
|
|
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-16 Score=148.86 Aligned_cols=119 Identities=29% Similarity=0.374 Sum_probs=102.3
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-----eeeeccccCCCCCeeccEEEEEccCC-
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-----KGKTRHFEKKSNPEWKQVFAFSKEKI- 112 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-----~~~T~~~~~t~nP~wne~f~f~~~~~- 112 (789)
|..++++.|+... +.|.|+|++|+||+..+..+.+||||++++.+. .++|+++.++.||.|||+|.|.+...
T Consensus 1 G~i~~~l~y~~~~--~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~ 78 (134)
T cd00276 1 GELLLSLSYLPTA--ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQ 78 (134)
T ss_pred CeEEEEEEeeCCC--CEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHH
Confidence 3578999999887 899999999999999888889999999999753 56999999999999999999998654
Q ss_pred -CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCC
Q 003882 113 -QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDD 166 (789)
Q Consensus 113 -~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 166 (789)
....|.|+|||++..+++++||++.+++.+ .+...+ .|++|....++
T Consensus 79 l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~-----~W~~l~~~~~~ 126 (134)
T cd00276 79 LEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELE-----HWNEMLASPRK 126 (134)
T ss_pred hCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHH-----HHHHHHhCCCC
Confidence 357899999999998899999999999999 333333 89999887543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.1e-16 Score=140.43 Aligned_cols=101 Identities=19% Similarity=0.201 Sum_probs=87.9
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE---CCEEEeeccccCCCCCccccEEEEE-EeC---CCceEEEEEEeC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY---GLKWVRTRTLVDNFNPKWNEQYTWE-VYD---PCTVITLGVFDN 453 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---~~~~~~T~~~~~t~~P~wne~~~f~-v~~---~~~~l~v~v~d~ 453 (789)
+.|.|+|++|+||++.+ ..+.+||||++.+ ..++.||+++++ .||+|||.|.|+ +.. ....|.|+|||+
T Consensus 16 ~~L~V~Vi~a~nL~~~~---~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~ 91 (124)
T cd08389 16 RKLTVTVIRAQDIPTKD---RGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGV 91 (124)
T ss_pred CEEEEEEEEecCCCchh---cCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEEC
Confidence 69999999999999874 3578999999876 245789999888 999999999998 543 356899999999
Q ss_pred CCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 454 CHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 454 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
+.++ ++++||.+.|+|+++..+.....||+|.
T Consensus 92 ~~~~-----~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 92 ERMR-----KERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred CCcc-----cCceEEEEEEeccccCCCCCceEEEeCC
Confidence 9876 8899999999999999888889999984
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=142.11 Aligned_cols=119 Identities=18% Similarity=0.300 Sum_probs=97.0
Q ss_pred EEEEEEEeeC--CCCCCCCCCCCcEEEEEE--C---CeeeeeccccCCCCCeeccEEEEEccCC--------CCceEEEE
Q 003882 56 LYVRVEKARD--LPTNPVSGSCDPYVEVKL--G---NYKGKTRHFEKKSNPEWKQVFAFSKEKI--------QSSVLEVF 120 (789)
Q Consensus 56 L~V~v~~a~~--L~~~~~~g~~dpyv~v~~--~---~~~~~T~~~~~t~nP~wne~f~f~~~~~--------~~~~l~v~ 120 (789)
..++|..|++ |+..+..+.+||||++++ . .++.||+++++|+||+|||+|.|.+... ....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4556666666 777777889999999997 2 3688999999999999999999998543 25679999
Q ss_pred EEeCCCC-CCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEee
Q 003882 121 VRDREIV-GRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGT 181 (789)
Q Consensus 121 V~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 181 (789)
|||++.+ .+|++||++.++|+.+....... .|++|.+.. ....|.|.+.+.+..
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~-----~~~~L~~~~--k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIH-----ESVDLMDGR--KATGGKLEVKVRLRE 138 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcce-----EEEEhhhCC--CCcCCEEEEEEEecC
Confidence 9999986 57999999999999998775544 799998533 356899999998864
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.1e-16 Score=144.88 Aligned_cols=92 Identities=32% Similarity=0.474 Sum_probs=86.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCcee
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYI 133 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~l 133 (789)
|.|.|+|++|+||+..+. +.+||||+++++++.++|++++++.||+|||+|.|.+.++ ...|.|+|||++.+++|++|
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~~~dd~i 79 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTFSKDDSM 79 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCCCCCCEE
Confidence 789999999999999887 8899999999999999999999999999999999999877 68999999999999999999
Q ss_pred EEEEEEccccCCCC
Q 003882 134 GKVVFDMNEVPTRV 147 (789)
Q Consensus 134 G~~~i~l~~l~~~~ 147 (789)
|++.+++.++....
T Consensus 80 G~a~i~l~~l~~~~ 93 (145)
T cd04038 80 GEAEIDLEPLVEAA 93 (145)
T ss_pred EEEEEEHHHhhhhh
Confidence 99999999998764
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.2e-16 Score=137.22 Aligned_cols=102 Identities=26% Similarity=0.443 Sum_probs=91.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCeEEEEEECCeEEeeecccCCCCCCccCceeEEEeeCCCCCeEEEEEEEccCCCCCCceE
Q 003882 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLG 298 (789)
Q Consensus 219 L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~~iG 298 (789)
|.|+|++|++|+..+..+.+||||+++++++.++|+++++ +.||.|||.|.|.+..+..+.|.|+|+|++. +++||
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG 77 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKER-TNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG 77 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccC-CCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence 7899999999999988899999999999999999999986 9999999999999988777899999999875 88999
Q ss_pred EEEEeccccccccCCCCCcceeEEcccc
Q 003882 299 RLRLSLNVIERRLDHRPVHSKWFNLEKF 326 (789)
Q Consensus 299 ~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 326 (789)
++.++|.++... .....+.||+|.+.
T Consensus 78 ~~~i~l~~l~~~--~~~~~~~w~~L~~~ 103 (105)
T cd04050 78 SLTLPLSELLKE--PDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEHHHhhcc--ccceeeeeEecCCC
Confidence 999999998753 23457899999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.1e-16 Score=139.89 Aligned_cols=104 Identities=28% Similarity=0.403 Sum_probs=93.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
|.|.|+|++|++|+..+..+.+||||+|.+++ ..++|+++.++.||+|||+|.|.+... .+.|.|+|||++..++|++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~~~d~~ 79 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKVGKDRS 79 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCCCCCCe
Confidence 57999999999999998889999999999987 468999999999999999999998765 4799999999999999999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 133 IGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 133 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
||++.+++.++... ..+ .||.|.+..
T Consensus 80 IG~~~~~l~~l~~~-~~~-----~~~~~~~~~ 105 (120)
T cd04045 80 LGSVEINVSDLIKK-NED-----GKYVEYDDE 105 (120)
T ss_pred eeEEEEeHHHhhCC-CCC-----ceEEecCCC
Confidence 99999999999987 334 899998865
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-16 Score=147.18 Aligned_cols=118 Identities=24% Similarity=0.303 Sum_probs=97.5
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK-- 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~-- 111 (789)
|...+++.|.... +.|.|+|++|++|+..+..|.+||||+|++.+ ..++|++++++.||+|||+|.|.+..
T Consensus 1 g~l~~~~~y~~~~--~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 78 (134)
T cd08403 1 GELMFSLCYLPTA--GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPEN 78 (134)
T ss_pred CeEEEEEEEcCCC--CEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHH
Confidence 3578999999887 99999999999999999899999999999853 25699999999999999999999743
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 165 (789)
.....|.|+|||++.++++++||++.+++... +...+ .|+.+....+
T Consensus 79 ~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~--~~~~~-----~w~~~~~~~~ 125 (134)
T cd08403 79 VDNVSLIIAVVDYDRVGHNELIGVCRVGPNAD--GQGRE-----HWNEMLANPR 125 (134)
T ss_pred hCCCEEEEEEEECCCCCCCceeEEEEECCCCC--CchHH-----HHHHHHHCCC
Confidence 33457999999999999999999999987632 22222 6877765543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-16 Score=140.44 Aligned_cols=99 Identities=26% Similarity=0.386 Sum_probs=85.6
Q ss_pred cEEEEEEEEccCCCCCccCCCC-CCcCcEEEEEEC---CEEEeeccccCCCCCccccEEEEEEeCC----CceEEEEEEe
Q 003882 381 GILEVGILSAQGLLPMKTRDGR-GTTDAYCVAKYG---LKWVRTRTLVDNFNPKWNEQYTWEVYDP----CTVITLGVFD 452 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~-~~~dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~f~v~~~----~~~l~v~v~d 452 (789)
|.|+|+|++|+||+.++ .. +.+||||+|.+. ....+|+++++++||+|||.|.|.+..+ ...|.|+|||
T Consensus 1 G~L~V~v~~a~~L~~~d---~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKAD---FGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCccc---CCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence 78999999999999874 34 789999999983 3568999999999999999999988653 5689999999
Q ss_pred CCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 453 NCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 453 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
+|.++ .|++||++.++++++... ..|+++.
T Consensus 78 ~d~~~-----~dd~lG~~~i~l~~l~~~---~~~~~~~ 107 (111)
T cd04041 78 SDRFT-----ADDRLGRVEIDLKELIED---RNWMGRR 107 (111)
T ss_pred CCCCC-----CCCcceEEEEEHHHHhcC---CCCCccc
Confidence 99876 789999999999999843 5788874
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-15 Score=139.67 Aligned_cols=113 Identities=24% Similarity=0.366 Sum_probs=95.9
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC---EEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL---KWVRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLG 457 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~ 457 (789)
.++|+|++|+||+.++ ..+.+||||++.+++ ...||++++++.||.|||.|.|.+... ...|.|+|||++..+
T Consensus 2 ~~~V~v~~a~~L~~~~---~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~ 78 (126)
T cd04043 2 LFTIRIVRAENLKADS---SNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVG 78 (126)
T ss_pred EEEEEEEEeECCCCCC---CCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCC
Confidence 6899999999999874 457899999998854 468999999999999999999999874 578999999999875
Q ss_pred CCCCCCCCccEEEEEECccccc---CceEeeeEeeeecCCCCCccceEEEEEEEEe
Q 003882 458 GSGTKPDSRIGKVRIRLSTLEA---DRIYTHSYPLLVLNPSGVKKMGELQLAVRFT 510 (789)
Q Consensus 458 ~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 510 (789)
++++||++.++|+++.. +.....|++|. ..|+|++++.+.
T Consensus 79 -----~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~--------~~g~i~l~~~~~ 121 (126)
T cd04043 79 -----KHDLCGRASLKLDPKRFGDDGLPREIWLDLD--------TQGRLLLRVSME 121 (126)
T ss_pred -----CCceEEEEEEecCHHHcCCCCCCceEEEEcC--------CCCeEEEEEEEe
Confidence 78999999999998643 34568999995 249999988764
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.7e-16 Score=138.51 Aligned_cols=112 Identities=28% Similarity=0.429 Sum_probs=97.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeE
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN-YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIG 134 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG 134 (789)
|.|+|++|++|+..+..+.+||||+|.+++ ..++|+++.++.||.|||+|.|.+.......+.|+|||++..+++++||
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG 80 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG 80 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence 579999999999988888999999999986 4579999999999999999999987655689999999999988999999
Q ss_pred EEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEE
Q 003882 135 KVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVM 174 (789)
Q Consensus 135 ~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~ 174 (789)
++.+++.++..+...+ .|++|.+..+ ...|.|.
T Consensus 81 ~~~~~l~~l~~~~~~~-----~~~~L~~~g~--~~~~~~~ 113 (115)
T cd04040 81 SAYIDLSDLEPEETTE-----LTLPLDGQGG--GKLGAVF 113 (115)
T ss_pred EEEEEHHHcCCCCcEE-----EEEECcCCCC--ccCceEE
Confidence 9999999998865545 8999987654 3456654
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.1e-16 Score=146.04 Aligned_cols=128 Identities=19% Similarity=0.247 Sum_probs=100.5
Q ss_pred cceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE-----CCE
Q 003882 342 SSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-----GLK 416 (789)
Q Consensus 342 ~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-----~~~ 416 (789)
+|+|.+.+.+.... .+.+ +. ....+.|.|.|+|++|+||+..+ ..+.+||||+|.+ +.+
T Consensus 1 ~G~l~~~l~y~~~~--~~~~--------~~---~~~~~~g~L~V~Vi~A~nL~~~d---~~g~~DPYVkv~l~~~~~~~~ 64 (162)
T cd04020 1 RGELKVALKYVPPE--SEGA--------LK---SKKPSTGELHVWVKEAKNLPALK---SGGTSDSFVKCYLLPDKSKKS 64 (162)
T ss_pred CceEEEEEEecCcc--cccc--------cc---ccCCCCceEEEEEEeeeCCCCCC---CCCCCCCEEEEEEEcCCCCCc
Confidence 48888888865421 0000 00 01345699999999999999874 3578999999988 335
Q ss_pred EEeeccccCCCCCccccEEEEEEeC----CCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 417 WVRTRTLVDNFNPKWNEQYTWEVYD----PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 417 ~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
..||++++++.||.|||.|.|.+.. ....|.|+|||++.++ ++++||++.+++.++........|+.+.
T Consensus 65 ~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~-----~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 65 KQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLS-----SNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred ceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCC-----CCceEEEEEEeCCccccCCCccccccCC
Confidence 7999999999999999999998643 2458999999999875 7999999999999998766678888774
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.9e-17 Score=161.47 Aligned_cols=229 Identities=17% Similarity=0.245 Sum_probs=182.8
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEc--c
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSK--E 110 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~--~ 110 (789)
.|+..+.+.|+... ..+..+|..|++|..++.++..|||++..+++ .+.+|++..++.||+|+|+..+.- .
T Consensus 79 lg~~~~~~~y~~~~--~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~ 156 (362)
T KOG1013|consen 79 LGALEFELLYDSES--RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITD 156 (362)
T ss_pred ccchhhhhhhhhhh--hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceeccccc
Confidence 56678999999988 88999999999999999999999999999986 356899999999999999877763 2
Q ss_pred -CCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC----CC-ccceEEEEEEEEeecCC
Q 003882 111 -KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD----DR-KVKGEVMLAVWIGTQAD 184 (789)
Q Consensus 111 -~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~----~~-~~~G~l~l~~~~~~~~d 184 (789)
+.....+++.|+|.+.+..+++.|+..+++..|...+... ...|+.-+.+.+ .. +.+|.|.+++.|.+.
T Consensus 157 ~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~---f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~-- 231 (362)
T KOG1013|consen 157 DDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKS---FNICLEKSLPSERADRDEDEERGAILISLAYSST-- 231 (362)
T ss_pred chhhhhhhheeeccCcccccccCcccchhhhhccChhhcch---hhhhhhccCCcccccccchhhccceeeeeccCcC--
Confidence 2235678899999999999999999999999998775432 224544333311 11 457888877765421
Q ss_pred CcCCccCCCCCcccCCCccccccccccccCccEEEEEEEEEeecCCCCCCCCCCCeEEEEEECC-----eEEeeecccCC
Q 003882 185 EAFPEAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGN-----QVLKTKLCPTR 259 (789)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~ 259 (789)
...+.|+++.|..|..+|.++.+||||+.++.. .+++|.+.++
T Consensus 232 -------------------------------~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~- 279 (362)
T KOG1013|consen 232 -------------------------------TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK- 279 (362)
T ss_pred -------------------------------CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc-
Confidence 224889999999999999999999999999863 3677888887
Q ss_pred CCCCccCceeEEEeeC--CCCCeEEEEEEEccCCCCCCceEEEEEecc
Q 003882 260 TTNPLWNEDLIFVAAE--PFEEQLVLTVENKVTPAKDEPLGRLRLSLN 305 (789)
Q Consensus 260 t~nP~wne~f~f~~~~--~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~ 305 (789)
+.+|.||+.|.|.+.. .....+.|.|||++.....+++|-+...+.
T Consensus 280 t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 280 TLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred cCCccccccccccCCccchhcceEEEeecccCCCcCccCCCccccccc
Confidence 9999999999998744 345579999999998878899998766554
|
|
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=140.77 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=93.4
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE-----CCEEEeeccccCCCCCccccEEEEEEeCC---------CceE
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-----GLKWVRTRTLVDNFNPKWNEQYTWEVYDP---------CTVI 446 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~f~v~~~---------~~~l 446 (789)
|.|.|...++.+|+.. +..+.+||||++++ +.++.||+++++|+||+|||.|.|.|... ...|
T Consensus 4 ~el~i~~~~~~~l~~~---~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 4 IELTIVRCIGIPLPSG---WNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred eEEEEEEeeccccCCC---cCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcE
Confidence 3444444444446665 34578999999986 34689999999999999999999999654 3479
Q ss_pred EEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEe
Q 003882 447 TLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFT 510 (789)
Q Consensus 447 ~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 510 (789)
.|+|||.+.+. +.|++||++.++|+.+..+.....|++|... .....|+|+++++..
T Consensus 81 ~~~V~d~~~f~----~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~---~k~~Gg~l~v~ir~r 137 (155)
T cd08690 81 KFEVYHKGGFL----RSDKLLGTAQVKLEPLETKCEIHESVDLMDG---RKATGGKLEVKVRLR 137 (155)
T ss_pred EEEEEeCCCcc----cCCCeeEEEEEEcccccccCcceEEEEhhhC---CCCcCCEEEEEEEec
Confidence 99999998763 3799999999999999887777889998732 112369999998764
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.9e-16 Score=137.28 Aligned_cols=107 Identities=23% Similarity=0.354 Sum_probs=93.1
Q ss_pred CccEEEEEEEEEeecCCCCCCCCCCCeEEEEEECCeEEeeecccCCCCCCccCceeEEEeeCCC----CCeEEEEEEEcc
Q 003882 214 PKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPF----EEQLVLTVENKV 289 (789)
Q Consensus 214 ~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~~~----~~~l~i~V~d~d 289 (789)
|+.+.|+|+|++|++|. ++.+||||++++++++++|+++++ +.||.|||+|.|.+..+. +..|.|+|||++
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence 46778999999999998 467999999999999999999886 999999999999975542 468999999999
Q ss_pred CCCCCCceEEEEEeccccccccCCCCCcceeEEcccc
Q 003882 290 TPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKF 326 (789)
Q Consensus 290 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 326 (789)
..+++++||++.++|+++... +++....+|++|.++
T Consensus 76 ~~~~~~~iG~~~i~l~~v~~~-~~~~~~~~w~~L~~~ 111 (111)
T cd04011 76 SLRSDTLIGSFKLDVGTVYDQ-PDHAFLRKWLLLTDP 111 (111)
T ss_pred ccccCCccEEEEECCccccCC-CCCcceEEEEEeeCc
Confidence 888899999999999999753 455678899999763
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-15 Score=137.80 Aligned_cols=121 Identities=26% Similarity=0.327 Sum_probs=98.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
.+|.|+|++|+ |...+..+.+||||+|+++++ .++|+++.+|.||+|||+|.|.+.. .+.|.|+|||++..+++++
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~~~~ 78 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKADVL 78 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCCCcE
Confidence 46999999999 555555788999999999987 8899999999999999999999864 4789999999999999999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeeEEcccCCC-CCccceEEEEEE
Q 003882 133 IGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD-DRKVKGEVMLAV 177 (789)
Q Consensus 133 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~ 177 (789)
||++.++|.++.............|++|..... .+...|+|.+.+
T Consensus 79 iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 79 LGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 999999999998764322222225899986552 335689988764
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-15 Score=138.45 Aligned_cols=104 Identities=18% Similarity=0.225 Sum_probs=90.3
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE---CCEEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeC
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY---GLKWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVFDN 453 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---~~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~ 453 (789)
.+.|.|.|++|+||+.++. ..+.+||||++.+ +.+..+|+++++++||+|||.|.|.+... ...|.|+|||.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~--~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 90 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTK--DVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV 90 (123)
T ss_pred CCEEEEEEEEecCCCCccC--CCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence 4699999999999998741 3568999999998 34568999999999999999999998752 46899999999
Q ss_pred CCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 454 CHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 454 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
+..+ .+++||++.++|+++........|++|.
T Consensus 91 ~~~~-----~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 91 DRFS-----RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CcCC-----CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 9865 7899999999999999888889999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.7e-16 Score=139.91 Aligned_cols=108 Identities=23% Similarity=0.388 Sum_probs=94.5
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEc-c--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSK-E-- 110 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~-~-- 110 (789)
|..++++.|+... +.|.|+|++|++|+..+..+.+||||++.+.+ ..++|+++.++.||.|||+|.|.. .
T Consensus 2 G~~~~~l~y~~~~--~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~ 79 (123)
T cd04035 2 GTLEFTLLYDPAN--SALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEE 79 (123)
T ss_pred cEEEEEEEEeCCC--CEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHH
Confidence 5678999999987 89999999999999988888999999999853 367999999999999999999963 2
Q ss_pred CCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCC
Q 003882 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPP 149 (789)
Q Consensus 111 ~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~ 149 (789)
+.....|.|+|||++.+ ++++||++.+++++|..+...
T Consensus 80 ~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~ 117 (123)
T cd04035 80 DIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTK 117 (123)
T ss_pred HhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcce
Confidence 23357899999999988 899999999999999987543
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=138.16 Aligned_cols=101 Identities=18% Similarity=0.333 Sum_probs=86.5
Q ss_pred ccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCC-CCeeccEEEEEccCC-C
Q 003882 41 ERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKS-NPEWKQVFAFSKEKI-Q 113 (789)
Q Consensus 41 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~-nP~wne~f~f~~~~~-~ 113 (789)
..+|+.|.-.. +.|.|+|++|+||++....+.+||||+|++-. .++||+++++|+ ||+|||+|.|++... .
T Consensus 3 l~~sL~Y~p~~--~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~ 80 (135)
T cd08692 3 LQLGTCFQAVN--SRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEH 80 (135)
T ss_pred EEEEeeecCcC--CeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhh
Confidence 45788888877 99999999999999876567789999999863 367999999996 699999999998543 3
Q ss_pred CceEEEEEEeCCCCCCCceeEEEEEEcccc
Q 003882 114 SSVLEVFVRDREIVGRDDYIGKVVFDMNEV 143 (789)
Q Consensus 114 ~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l 143 (789)
.-.|.|+|||++..+++++||.+.+.....
T Consensus 81 ~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 81 GIQFLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eeEEEEEEEeCCCCcCCceEEEEEECCccC
Confidence 467889999999999999999999998764
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-15 Score=136.54 Aligned_cols=113 Identities=31% Similarity=0.538 Sum_probs=91.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCC--CCceEEEEEEeCCCCCCCce
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKI--QSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~--~~~~l~v~V~d~~~~~~d~~ 132 (789)
|.|+|++|+||+.. +.+||||+++++++ .++|+++.+ .||+|||+|.|.+... ....|.|.+||.+..+++.+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~ 77 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV 77 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence 78999999999976 78999999999985 479999999 9999999999998653 24678889999887766777
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 133 IGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 133 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
+|.+.|. .+..+...+ .||+|.+..+.....|+|++.++|
T Consensus 78 ~g~v~l~--~~~~~~~~~-----~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 78 IGKVALS--KLDLGQGKD-----EWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred EEEEEec--CcCCCCcce-----eEEECccCCCCCCcCceEEEEEEC
Confidence 7776554 444444434 999999877655678999998865
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=138.35 Aligned_cols=95 Identities=24% Similarity=0.376 Sum_probs=83.5
Q ss_pred CCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeC--CCceEEEEEEeCC
Q 003882 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYD--PCTVITLGVFDNC 454 (789)
Q Consensus 377 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~--~~~~l~v~v~d~~ 454 (789)
...+|.|+|+|++|+||+. +..+.+||||+|+++++.+||++++++.||+|||.|.|.... ....|.|+|||++
T Consensus 24 ~~~~~~L~V~V~~A~~L~~----d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d 99 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG----DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRD 99 (127)
T ss_pred cCCcEEEEEEEEECCCCCc----CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCC
Confidence 4567999999999999973 345789999999999999999999999999999999997543 3779999999999
Q ss_pred CCCCCCCCCCCccEEEEEECcccccC
Q 003882 455 HLGGSGTKPDSRIGKVRIRLSTLEAD 480 (789)
Q Consensus 455 ~~~~~~~~~d~~lG~~~i~l~~l~~~ 480 (789)
.++ .|++||++.++|.....+
T Consensus 100 ~~s-----~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 100 NGW-----DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCC-----CCCeeEEEEEEecCCcee
Confidence 986 899999999999987654
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.9e-16 Score=142.33 Aligned_cols=92 Identities=32% Similarity=0.538 Sum_probs=84.7
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGS 459 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~ 459 (789)
+|.|+|+|++|+||+..+ . +.+||||+++++++.++|++++++.||+|||.|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d---~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~-- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRD---F-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS-- 74 (145)
T ss_pred CeEEEEEEEeeECCCCCC---C-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC--
Confidence 489999999999998764 3 6899999999999999999999999999999999999998889999999999886
Q ss_pred CCCCCCccEEEEEECcccccC
Q 003882 460 GTKPDSRIGKVRIRLSTLEAD 480 (789)
Q Consensus 460 ~~~~d~~lG~~~i~l~~l~~~ 480 (789)
.|++||++.+++.++...
T Consensus 75 ---~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 75 ---KDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred ---CCCEEEEEEEEHHHhhhh
Confidence 889999999999998754
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.3e-16 Score=140.50 Aligned_cols=113 Identities=27% Similarity=0.309 Sum_probs=95.3
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-EEEeecccc-CCCCCccccEEEEEEeCC-----CceEEEEEEeCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-KWVRTRTLV-DNFNPKWNEQYTWEVYDP-----CTVITLGVFDNC 454 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-~~~~T~~~~-~t~~P~wne~~~f~v~~~-----~~~l~v~v~d~~ 454 (789)
.|+|+|++|++|+..+ ..+.+||||+|++++ +..+|+++. ++.||.|||.|.|.+.++ ...|.|+|||++
T Consensus 1 ~L~V~V~sA~~L~~~~---~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~ 77 (125)
T cd04051 1 TLEITIISAEDLKNVN---LFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER 77 (125)
T ss_pred CEEEEEEEcccCCCCC---cccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC
Confidence 3789999999999774 357899999999988 889999986 589999999999999876 579999999998
Q ss_pred CCCCCCCCCCCccEEEEEECcccccCce-----EeeeEeeeecCCCCCccceEEEE
Q 003882 455 HLGGSGTKPDSRIGKVRIRLSTLEADRI-----YTHSYPLLVLNPSGVKKMGELQL 505 (789)
Q Consensus 455 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~i~l 505 (789)
.++ .|++||.+.|++.++..+.. ...||+|...+ | +..|.|++
T Consensus 78 ~~~-----~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g-~~~G~~~~ 125 (125)
T cd04051 78 PSL-----GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--G-KPQGVLNF 125 (125)
T ss_pred CCC-----CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--C-CcCeEEeC
Confidence 865 78999999999999987653 47899998543 3 34688864
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-15 Score=138.93 Aligned_cols=103 Identities=27% Similarity=0.429 Sum_probs=92.3
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccC-CCCCccccEEEEEEeCC----CceEEEEEEeCCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVD-NFNPKWNEQYTWEVYDP----CTVITLGVFDNCH 455 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~-t~~P~wne~~~f~v~~~----~~~l~v~v~d~~~ 455 (789)
|.|.|+|++|+||+.++. .+.+||||+|+++++..+|+++++ +.||.|||.|.|.+..+ ...|.|+|||.+.
T Consensus 1 g~L~V~V~~A~~L~~~~~---~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDTDF---LGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCCCC---CCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc
Confidence 689999999999998743 478999999999999999999885 89999999999999876 5789999999998
Q ss_pred CCCCCCCCCCccEEEEEECcccccCceEeeeEeeee
Q 003882 456 LGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLV 491 (789)
Q Consensus 456 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 491 (789)
++ .+++||++.++++++..++....|++|..
T Consensus 78 ~~-----~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 78 FS-----DDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CC-----CCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 75 78999999999999998877899999863
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.6e-15 Score=136.73 Aligned_cols=117 Identities=20% Similarity=0.282 Sum_probs=98.5
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCee-eeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCC-CC---
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYK-GKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREI-VG--- 128 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~-~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~-~~--- 128 (789)
..|.|.|++|++|+.++ +|||+|.++++. .||+++.++.||.|+|.|+|..... ...|.|.||+.+. .+
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~~~~~~~ 84 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESDKKKKKD 84 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccCcccccc
Confidence 57999999999999864 899999999987 5999999999999999999986554 3789999976543 22
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCC--------ccceEEEEEEEEee
Q 003882 129 RDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDR--------KVKGEVMLAVWIGT 181 (789)
Q Consensus 129 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~--------~~~G~l~l~~~~~~ 181 (789)
++++||.+.|++.++..+...+ .||+|.+..+.. ...+.|+++++|..
T Consensus 85 ~~~~IG~V~Ip~~~l~~~~~ve-----~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 85 KSQLIGTVNIPVTDVSSRQFVE-----KWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred CCcEEEEEEEEHHHhcCCCccc-----EEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence 5789999999999999876666 999999887653 44589999998864
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=139.10 Aligned_cols=92 Identities=29% Similarity=0.521 Sum_probs=83.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECCee--eeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYK--GKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 55 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~--~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
.|+|+|++|++|+..+..|.+||||+++++++. .+|+++++|.||+|||+|.|.+..+....|.|+|||++.+++|++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~ 80 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL 80 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence 378999999999999988999999999999864 578889999999999999999876667899999999999999999
Q ss_pred eEEEEEEccccCCC
Q 003882 133 IGKVVFDMNEVPTR 146 (789)
Q Consensus 133 lG~~~i~l~~l~~~ 146 (789)
||++.+++.+....
T Consensus 81 iG~~~i~l~~~~~~ 94 (124)
T cd04037 81 IGETVIDLEDRFFS 94 (124)
T ss_pred eEEEEEeecccccc
Confidence 99999999987753
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-16 Score=162.31 Aligned_cols=115 Identities=28% Similarity=0.479 Sum_probs=100.6
Q ss_pred cceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC-CCCc
Q 003882 42 RATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK-IQSS 115 (789)
Q Consensus 42 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~-~~~~ 115 (789)
.+.++..... ..|.|+|.+|+||.++|.+|.+||||++.+-+ .+++|++++.|+||+|||+|.|.+.. ..+.
T Consensus 170 rl~l~~~~~~--~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~Dkdr 247 (683)
T KOG0696|consen 170 RLYLEAHIKR--DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDR 247 (683)
T ss_pred eEEEEEEecC--ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccc
Confidence 4555555555 78999999999999999999999999999976 36799999999999999999999843 3478
Q ss_pred eEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 116 VLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 116 ~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
.|.|+|||+|+-+++||+|..++.+++|.... .+ .||+|..+.
T Consensus 248 RlsiEvWDWDrTsRNDFMGslSFgisEl~K~p-~~-----GWyKlLsqe 290 (683)
T KOG0696|consen 248 RLSIEVWDWDRTSRNDFMGSLSFGISELQKAP-VD-----GWYKLLSQE 290 (683)
T ss_pred eeEEEEecccccccccccceecccHHHHhhcc-hh-----hHHHHhhhh
Confidence 99999999999999999999999999999874 34 899998764
|
|
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-15 Score=136.71 Aligned_cols=103 Identities=30% Similarity=0.371 Sum_probs=91.5
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-KWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGS 459 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~ 459 (789)
|.|+|.|++|+||+..+ ..+.+||||+|.+++ ...+|++++++.||.|||.|.|.+..+...|.|+|||++..+
T Consensus 1 g~L~V~Vi~a~~L~~~d---~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~-- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNLE---GVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG-- 75 (120)
T ss_pred CeEEEEEEeeECCCCcc---CCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC--
Confidence 68999999999999874 357999999999977 569999999999999999999999887789999999999875
Q ss_pred CCCCCCccEEEEEECcccccCceEeeeEeeeec
Q 003882 460 GTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVL 492 (789)
Q Consensus 460 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 492 (789)
.|++||++.++++++..+ ..+.||.|.+.
T Consensus 76 ---~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 76 ---KDRSLGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred ---CCCeeeEEEEeHHHhhCC-CCCceEEecCC
Confidence 789999999999999876 55888888744
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.9e-15 Score=134.73 Aligned_cols=117 Identities=22% Similarity=0.408 Sum_probs=99.9
Q ss_pred eEEEEEEEEeeCCCCCC--CCCCCCcEEEEEEC------CeeeeeccccCCC-CCeeccEEEEEccCCCCceEEEEEEeC
Q 003882 54 FYLYVRVEKARDLPTNP--VSGSCDPYVEVKLG------NYKGKTRHFEKKS-NPEWKQVFAFSKEKIQSSVLEVFVRDR 124 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~--~~g~~dpyv~v~~~------~~~~~T~~~~~t~-nP~wne~f~f~~~~~~~~~l~v~V~d~ 124 (789)
..|+|+|++|+||+..+ ..+.+||||++++. ..+++|+++.++. ||+|||+|.|.+.......|.|+|||.
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 46999999999999887 57789999999994 3567999988876 999999999998766567899999999
Q ss_pred CCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 125 EIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 125 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
+.. ++++||++.+++.++..+. .|++|.+..+.....|.|.+.+++
T Consensus 82 ~~~-~~~~iG~~~~~l~~l~~g~--------~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG-DDDFLGQACLPLDSLRQGY--------RHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred CCC-CCcEeEEEEEEhHHhcCce--------EEEEecCCCCCCCcceeEEEEEEE
Confidence 988 8999999999999996532 789999887765567899888765
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-15 Score=136.58 Aligned_cols=92 Identities=27% Similarity=0.353 Sum_probs=77.9
Q ss_pred CccEEEEEEEEEeecCCCCCC--CCCCCeEEEEEECC-----eEEeeecccCCCCCCccCceeEEEeeCC--CCCeEEEE
Q 003882 214 PKLWYLRVNVIEAQDVEPLDK--SQLPQAFVEAQVGN-----QVLKTKLCPTRTTNPLWNEDLIFVAAEP--FEEQLVLT 284 (789)
Q Consensus 214 ~~~~~L~V~v~~ar~L~~~~~--~~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~l~i~ 284 (789)
|..+.|.|.|++|+||...+. .+.+||||++++.. .+.||+++++ +.||+|||.|.|.+... .+..|.|+
T Consensus 12 ~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L~~~~L~~~ 90 (138)
T cd08407 12 PAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELLAASSVELE 90 (138)
T ss_pred CCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHhCccEEEEE
Confidence 334569999999999999883 24589999999974 3568888886 99999999999998643 45679999
Q ss_pred EEEccCCCCCCceEEEEEeccc
Q 003882 285 VENKVTPAKDEPLGRLRLSLNV 306 (789)
Q Consensus 285 V~d~d~~~~d~~iG~~~i~l~~ 306 (789)
|+|++..+++++||++.+++..
T Consensus 91 V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 91 VLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EEeCCCCcCcceeceEEecCcC
Confidence 9999999999999999999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.1e-15 Score=139.71 Aligned_cols=100 Identities=30% Similarity=0.472 Sum_probs=86.6
Q ss_pred CCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-----------------------------EEEeeccccCCC
Q 003882 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----------------------------KWVRTRTLVDNF 427 (789)
Q Consensus 377 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----------------------------~~~~T~~~~~t~ 427 (789)
.++.+.|.|+|++|+||+++| ..|.+||||+|.++. ..++|+++++++
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d---~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tl 100 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKD---VNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTL 100 (153)
T ss_pred CCCeEEEEEEEEeccCCcccC---CCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCC
Confidence 577899999999999999884 457899999999853 237899999999
Q ss_pred CCccccEEEEEEeCC-CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEee
Q 003882 428 NPKWNEQYTWEVYDP-CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489 (789)
Q Consensus 428 ~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 489 (789)
||.|||.|.|.+.+. ...|.|+|||++ +++||++.++++++.. ...+.||+|
T Consensus 101 nP~WnE~F~f~v~~~~~~~L~i~V~D~d---------d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 101 NPVWNETFRFEVEDVSNDQLHLDIWDHD---------DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred CCccccEEEEEeccCCCCEEEEEEEecC---------CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999999999874 579999999964 5799999999999984 446999986
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.4e-15 Score=132.93 Aligned_cols=112 Identities=28% Similarity=0.460 Sum_probs=88.3
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLGVFDNCHLGG 458 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~d~~~~~~ 458 (789)
|+|+|++|+||+.. +.+||||+++++++ .++|+++++ .||.|||+|.|.+.. ....|.|.++|.+..+
T Consensus 2 L~v~vi~a~~l~~~------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~- 73 (117)
T cd08383 2 LRLRILEAKNLPSK------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD- 73 (117)
T ss_pred eEEEEEEecCCCcC------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC-
Confidence 78999999999853 68999999999885 589999999 999999999999986 3457888888877543
Q ss_pred CCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 459 SGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 459 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
.+..+|++.| ..+..+...+.||+|...+. +.+..|+|+|++.|
T Consensus 74 ----~~~~~g~v~l--~~~~~~~~~~~w~~L~~~~~-~~~~~G~l~l~~~~ 117 (117)
T cd08383 74 ----RDIVIGKVAL--SKLDLGQGKDEWFPLTPVDP-DSEVQGSVRLRARY 117 (117)
T ss_pred ----CeeEEEEEEe--cCcCCCCcceeEEECccCCC-CCCcCceEEEEEEC
Confidence 5566666554 55555777799999976543 23357999999875
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.6e-15 Score=136.10 Aligned_cols=91 Identities=22% Similarity=0.358 Sum_probs=80.1
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC-------CEEEeeccccCCCCCccccEEEEEEeCC-----CceEEE
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG-------LKWVRTRTLVDNFNPKWNEQYTWEVYDP-----CTVITL 448 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-------~~~~~T~~~~~t~~P~wne~~~f~v~~~-----~~~l~v 448 (789)
+.|.|+|++|++|+.++ ..+.+||||+|.+. ....||+++++|+||+|||.|.|++... ...|.|
T Consensus 16 ~~L~V~Vi~A~~L~~~~---~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 16 QSLRVEILNARNLLPLD---SNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CEEEEEEEEeeCCCCcC---CCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEE
Confidence 58999999999999874 35789999999984 3579999999999999999999998752 458999
Q ss_pred EEEeCCCCCCCCCCCCCccEEEEEECccccc
Q 003882 449 GVFDNCHLGGSGTKPDSRIGKVRIRLSTLEA 479 (789)
Q Consensus 449 ~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~ 479 (789)
+|||++.++ ++++||++.++|+++..
T Consensus 93 ~V~d~d~~~-----~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 93 TVKDYDLLG-----SNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEecCCCC-----CCcEeEEEEEeHHHCCc
Confidence 999999875 78999999999999874
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.2e-15 Score=132.15 Aligned_cols=111 Identities=29% Similarity=0.412 Sum_probs=94.5
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-EEEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCCCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-KWVRTRTLVDNFNPKWNEQYTWEVYD-PCTVITLGVFDNCHLGGSG 460 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~~~~~~ 460 (789)
|+|+|++|+||+..+ ..+.+||||+|.+++ +.++|+++.++.||.|||.|.|.+.+ ....+.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~~---~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~--- 74 (115)
T cd04040 1 LTVDVISAENLPSAD---RNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG--- 74 (115)
T ss_pred CEEEEEeeeCCCCCC---CCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC---
Confidence 578999999999874 357899999999965 55899999999999999999999986 4679999999999875
Q ss_pred CCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEE
Q 003882 461 TKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQ 504 (789)
Q Consensus 461 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~ 504 (789)
++++||++.+++.++..+.....|++|... |..+.|.+.
T Consensus 75 --~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~---g~~~~~~~~ 113 (115)
T cd04040 75 --KDDLLGSAYIDLSDLEPEETTELTLPLDGQ---GGGKLGAVF 113 (115)
T ss_pred --CCCceEEEEEEHHHcCCCCcEEEEEECcCC---CCccCceEE
Confidence 789999999999999988888999999643 333456664
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.60 E-value=5e-15 Score=134.47 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=86.4
Q ss_pred EEEEeeCCCCCCCCCCCCcEEEEEECCe-------eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCC----C
Q 003882 59 RVEKARDLPTNPVSGSCDPYVEVKLGNY-------KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREI----V 127 (789)
Q Consensus 59 ~v~~a~~L~~~~~~g~~dpyv~v~~~~~-------~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~----~ 127 (789)
-.++|++|+..+..|.+||||+|++.+. .++|+++++|.||+|||+|.|.+.....+.|.|+|||++. .
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~ 84 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL 84 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence 3488999999998899999999999875 3799999999999999999998654446789999999997 7
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccC
Q 003882 128 GRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR 163 (789)
Q Consensus 128 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 163 (789)
+++++||++.+++.+|....... .|++|.+.
T Consensus 85 ~~~d~iG~~~i~l~~l~~~~~~~-----~~~~l~~~ 115 (120)
T cd04048 85 SDHDFLGEAECTLGEIVSSPGQK-----LTLPLKGG 115 (120)
T ss_pred CCCcEEEEEEEEHHHHhcCCCcE-----EEEEccCC
Confidence 89999999999999999765544 78888443
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.9e-15 Score=135.50 Aligned_cols=103 Identities=25% Similarity=0.369 Sum_probs=89.4
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCC--CceEEEEEEeC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVYDP--CTVITLGVFDN 453 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~--~~~l~v~v~d~ 453 (789)
+.|+|+|++|++|+..+ ..+.+||||+|.+.+ ...+|++++++.||.|||.|.|.+... ...|.|+|||+
T Consensus 13 ~~l~v~i~~a~nL~~~~---~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~ 89 (131)
T cd04026 13 NKLTVEVREAKNLIPMD---PNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDW 89 (131)
T ss_pred CEEEEEEEEeeCCCCcC---CCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEEC
Confidence 59999999999999764 347899999999953 679999999999999999999998753 56899999999
Q ss_pred CCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeec
Q 003882 454 CHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVL 492 (789)
Q Consensus 454 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 492 (789)
+..+ .+++||++.++++++... ....||+|.+.
T Consensus 90 ~~~~-----~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 90 DRTT-----RNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCCC-----CcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 8765 789999999999999855 56899999754
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.4e-15 Score=135.16 Aligned_cols=103 Identities=21% Similarity=0.233 Sum_probs=84.3
Q ss_pred EEEEEEEEEeecCCCCCCCCCCCeEEEEEECC-----eEEeeecccCCCCCCccCceeEEEeeC--CCCCeEEEEEEEcc
Q 003882 217 WYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGN-----QVLKTKLCPTRTTNPLWNEDLIFVAAE--PFEEQLVLTVENKV 289 (789)
Q Consensus 217 ~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~wne~f~f~~~~--~~~~~l~i~V~d~d 289 (789)
..|.|+|++|++|+..+..+.+||||++++.. .+.||+++++ +.||+|||+|.|.+.. ..+..|.|+|+|++
T Consensus 15 ~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 15 ERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRD-DTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccC-CCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 46999999999999998889999999999953 2567888876 9999999999999854 35678999999999
Q ss_pred CCCCCCceEEEEEeccccccccCCCCCcceeEEcccc
Q 003882 290 TPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKF 326 (789)
Q Consensus 290 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 326 (789)
..+++++||++.++.... +....+|..+...
T Consensus 94 ~~~~~~~iG~v~lg~~~~------g~~~~hW~~ml~~ 124 (136)
T cd08406 94 EDGKTPNVGHVIIGPAAS------GMGLSHWNQMLAS 124 (136)
T ss_pred CCCCCCeeEEEEECCCCC------ChhHHHHHHHHHC
Confidence 999999999999976532 1234567666543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.8e-15 Score=138.41 Aligned_cols=101 Identities=20% Similarity=0.219 Sum_probs=86.0
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC--CE---EEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEe
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG--LK---WVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLGVFD 452 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~~---~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~d 452 (789)
+.|.|+|++|+||+.++ ..|.+||||++.+. ++ ..||+++++++||.|||.|.|.+.. ....|.|+|||
T Consensus 15 ~~L~V~vi~a~~L~~~d---~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d 91 (136)
T cd08404 15 NRLTVVVLKARHLPKMD---VSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLD 91 (136)
T ss_pred CeEEEEEEEeeCCCccc---cCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence 69999999999999874 35789999999883 32 4789999999999999999999874 35679999999
Q ss_pred CCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeee
Q 003882 453 NCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLV 491 (789)
Q Consensus 453 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 491 (789)
++.++ ++++||++.+++.. .+....+|++|..
T Consensus 92 ~d~~~-----~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 92 SDRVT-----KNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred CCCCC-----CCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 99876 88999999999999 3556688998864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.1e-15 Score=136.52 Aligned_cols=102 Identities=22% Similarity=0.304 Sum_probs=90.1
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEEC----CEEEeeccccCCCCCccccEEEEEEeCC----------------
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG----LKWVRTRTLVDNFNPKWNEQYTWEVYDP---------------- 442 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~----~~~~~T~~~~~t~~P~wne~~~f~v~~~---------------- 442 (789)
|+|.|++|+||+.+ . .+.+||||+|+++ ++..+|++++++.||.|||.|.|.+...
T Consensus 1 L~V~Vi~A~~L~~~-~---~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~ 76 (137)
T cd08675 1 LSVRVLECRDLALK-S---NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLE 76 (137)
T ss_pred CEEEEEEccCCCcc-c---CCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccc
Confidence 57899999999876 3 4689999999998 7889999999999999999999998764
Q ss_pred CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecC
Q 003882 443 CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLN 493 (789)
Q Consensus 443 ~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 493 (789)
...|.|+|||++..+ .+++||++.+++.++........||+|....
T Consensus 77 ~~~l~i~V~d~~~~~-----~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~ 122 (137)
T cd08675 77 KSELRVELWHASMVS-----GDDFLGEVRIPLQGLQQAGSHQAWYFLQPRE 122 (137)
T ss_pred ccEEEEEEEcCCcCc-----CCcEEEEEEEehhhccCCCcccceEecCCcC
Confidence 458999999999865 7899999999999998877789999997654
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=135.00 Aligned_cols=105 Identities=27% Similarity=0.303 Sum_probs=88.0
Q ss_pred CCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC--C---EEEeeccccCCCCCccccEEEEEEeCC---CceEEE
Q 003882 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG--L---KWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITL 448 (789)
Q Consensus 377 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v 448 (789)
.+..|.|.|.|++|+||+.++ ..|.+||||+|.++ + ...+|+++++++||.|||.|.|.+... ...|.|
T Consensus 11 ~~~~~~l~V~Vi~a~~L~~~d---~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~ 87 (136)
T cd08402 11 VPTAGKLTVVILEAKNLKKMD---VGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIV 87 (136)
T ss_pred cCCCCeEEEEEEEeeCCCccc---CCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 455689999999999999874 45789999999984 2 357899999999999999999998743 348999
Q ss_pred EEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeee
Q 003882 449 GVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLV 491 (789)
Q Consensus 449 ~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 491 (789)
+|||++.++ .|++||++.|++... +....+|+++..
T Consensus 88 ~v~d~~~~~-----~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 88 TVLDYDRIG-----KNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred EEEeCCCCC-----CCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 999999876 889999999999874 556688888864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=164.40 Aligned_cols=133 Identities=20% Similarity=0.359 Sum_probs=112.7
Q ss_pred cceeeecccCceeEEEEEEEEeeCCCCCCC------------------------------------------CCCCCcEE
Q 003882 42 RATSTYDLVEQMFYLYVRVEKARDLPTNPV------------------------------------------SGSCDPYV 79 (789)
Q Consensus 42 ~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~------------------------------------------~g~~dpyv 79 (789)
+.+..--+.+ |.|.|+|.+|++|+++|. .+++||||
T Consensus 4 ~~~~~~~llh--g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV 81 (868)
T PLN03008 4 KVSEDVMLLH--GDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYV 81 (868)
T ss_pred ccccceEEee--cccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceE
Confidence 4555666777 999999999999985221 24689999
Q ss_pred EEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeE
Q 003882 80 EVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWY 158 (789)
Q Consensus 80 ~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~ 158 (789)
+|.++++ ..||++++++.||+|||+|.|.+.++. ..|.|+|||+|.++ +++||++.|+|.+|..+...+ .|+
T Consensus 82 ~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~-s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd-----~Wl 154 (868)
T PLN03008 82 TVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPF-AYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERIS-----GWF 154 (868)
T ss_pred EEEECCcceeeEEeCCCCCCCCcceeEEEEecCCC-ceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceE-----EEE
Confidence 9999886 469999999999999999999998864 79999999999996 689999999999999987766 999
Q ss_pred EcccCCCCC-ccceEEEEEEEEeecC
Q 003882 159 RLEDRRDDR-KVKGEVMLAVWIGTQA 183 (789)
Q Consensus 159 ~L~~~~~~~-~~~G~l~l~~~~~~~~ 183 (789)
+|.+..++. +..|.|++++.|.+..
T Consensus 155 ~Ll~~~~kp~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 155 PVLGASGKPPKAETAIFIDMKFTPFD 180 (868)
T ss_pred EccccCCCCCCCCcEEEEEEEEEEcc
Confidence 999887653 4568999999998654
|
|
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-14 Score=133.38 Aligned_cols=106 Identities=21% Similarity=0.312 Sum_probs=84.5
Q ss_pred CCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE--CC---EEEeeccccCCCCCccccEEEEEEeCC---CceEEE
Q 003882 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY--GL---KWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITL 448 (789)
Q Consensus 377 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v 448 (789)
.+..|.|.|+|++|++|+.++. .|.+||||+|.+ ++ ++.+|+++++|.||.|||.|.|.+... ...|.|
T Consensus 10 ~~~~~~L~V~vi~a~~L~~~d~---~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~ 86 (135)
T cd08410 10 LPSAGRLNVDIIRAKQLLQTDM---SQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVF 86 (135)
T ss_pred CCCCCeEEEEEEEecCCCcccC---CCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEE
Confidence 3445899999999999998743 478999999997 32 358999999999999999999998642 347999
Q ss_pred EEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeee
Q 003882 449 GVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLV 491 (789)
Q Consensus 449 ~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 491 (789)
+|||++..+ ++++||++.|....... ....+|+.|..
T Consensus 87 ~V~d~d~~~-----~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 87 TVYGHNVKS-----SNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred EEEeCCCCC-----CCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 999999875 89999999977644432 23477887764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-14 Score=130.45 Aligned_cols=116 Identities=24% Similarity=0.312 Sum_probs=93.3
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSG 460 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 460 (789)
.|.|+|++|+ |... +..+.+||||+|+++++ ..+|++++++.||.|||.|.|.+. +...|.|+|||++..+
T Consensus 3 ~L~V~i~~a~-l~~~---~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~--- 74 (125)
T cd04021 3 QLQITVESAK-LKSN---SKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLK--- 74 (125)
T ss_pred eEEEEEEeeE-CCCC---CcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCC---
Confidence 6899999998 5443 23568999999999887 899999999999999999999986 4679999999999875
Q ss_pred CCCCCccEEEEEECcccccCce-----EeeeEeeeecCCCCCccceEEEEEE
Q 003882 461 TKPDSRIGKVRIRLSTLEADRI-----YTHSYPLLVLNPSGVKKMGELQLAV 507 (789)
Q Consensus 461 ~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~i~l~~ 507 (789)
.+++||++.++|+++..+.. ...|++|........+..|+|++++
T Consensus 75 --~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 --ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred --CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 78999999999999885321 3468888744321224569998875
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=129.77 Aligned_cols=101 Identities=24% Similarity=0.407 Sum_probs=86.2
Q ss_pred CCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCC
Q 003882 71 VSGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPP 149 (789)
Q Consensus 71 ~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~ 149 (789)
.+|.+||||+|+++++ .++|+++.++.||+|||+|.|.+.+.....|.|+|||++.+ ++++||++.++|+++.....
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~- 86 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATS- 86 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhh-
Confidence 4688999999999985 57999999999999999999999877678899999999998 89999999999999965422
Q ss_pred CCCCCCeeEEcccCCCCCccceEEEEEEEEee
Q 003882 150 DSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGT 181 (789)
Q Consensus 150 ~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 181 (789)
....||+|++. ..|+|++++.|.+
T Consensus 87 ---~~~~w~~L~~~-----~~G~i~~~~~~~p 110 (111)
T cd04052 87 ---VGQQWFPLSGN-----GQGRIRISALWKP 110 (111)
T ss_pred ---ccceeEECCCC-----CCCEEEEEEEEec
Confidence 12389999862 3699999988763
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=129.32 Aligned_cols=99 Identities=23% Similarity=0.290 Sum_probs=84.9
Q ss_pred CCCCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccc
Q 003882 401 GRGTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLE 478 (789)
Q Consensus 401 ~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~ 478 (789)
..|.+||||+|.++++ ..+|++++++.||.|||.|.|.+.++ ...|.|.|+|++.+ +|++||++.++|+++.
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~------~d~~iG~~~v~L~~l~ 82 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR------HDPVLGSVSISLNDLI 82 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC------CCCeEEEEEecHHHHH
Confidence 4678999999999875 58999999999999999999999875 57899999998875 6899999999999985
Q ss_pred c-CceEeeeEeeeecCCCCCccceEEEEEEEEee
Q 003882 479 A-DRIYTHSYPLLVLNPSGVKKMGELQLAVRFTC 511 (789)
Q Consensus 479 ~-~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 511 (789)
. +.....||+|.. .+.|+|++++.|.|
T Consensus 83 ~~~~~~~~w~~L~~------~~~G~i~~~~~~~p 110 (111)
T cd04052 83 DATSVGQQWFPLSG------NGQGRIRISALWKP 110 (111)
T ss_pred hhhhccceeEECCC------CCCCEEEEEEEEec
Confidence 4 345689999963 24699999998876
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-14 Score=128.84 Aligned_cols=93 Identities=17% Similarity=0.258 Sum_probs=76.7
Q ss_pred CccEEEEEEEEEeecCCCCCCCCCCCeEEEEEECC-----eEEeeecccCCCC-CCccCceeEEEeeCCC-CCeEEEEEE
Q 003882 214 PKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGN-----QVLKTKLCPTRTT-NPLWNEDLIFVAAEPF-EEQLVLTVE 286 (789)
Q Consensus 214 ~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~-nP~wne~f~f~~~~~~-~~~l~i~V~ 286 (789)
|..++|.|.|++|+||+.++..+.+||||+|.+.. .++||+++++ |. +|+|||+|.|++.... +-.+.|+|+
T Consensus 11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~-t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~ 89 (135)
T cd08692 11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKS-SNGQVKWGETMIFPVTQQEHGIQFLIKLY 89 (135)
T ss_pred CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEEC-CCCCceecceEEEeCCchhheeEEEEEEE
Confidence 45567999999999999886667789999998852 4688888876 74 6999999999997542 336788889
Q ss_pred EccCCCCCCceEEEEEecccc
Q 003882 287 NKVTPAKDEPLGRLRLSLNVI 307 (789)
Q Consensus 287 d~d~~~~d~~iG~~~i~l~~l 307 (789)
|++..+++++||++.++....
T Consensus 90 d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 90 SRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred eCCCCcCCceEEEEEECCccC
Confidence 998888999999999998753
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-14 Score=129.60 Aligned_cols=118 Identities=22% Similarity=0.246 Sum_probs=91.8
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC-------------CEEEeeccccCCCCCcc-ccEEEEEEeCCCceEE
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG-------------LKWVRTRTLVDNFNPKW-NEQYTWEVYDPCTVIT 447 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-------------~~~~~T~~~~~t~~P~w-ne~~~f~v~~~~~~l~ 447 (789)
...|.+++|+||+ .+ ..|.+||||++++. ++.++|+++++++||+| ||.|.|.+. +.+.|.
T Consensus 2 ~~~~~~~~A~~L~-~~---~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~ 76 (137)
T cd08691 2 SFSLSGLQARNLK-KG---MFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLE 76 (137)
T ss_pred EEEEEEEEeCCCC-Cc---cCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEE
Confidence 4689999999997 43 35799999999983 24799999999999999 999999986 467899
Q ss_pred EEEEeCCCCCCCCCCCCCccEEEEEECcccccC---ceEeeeEeeeecCCCCCccceEEEEEE
Q 003882 448 LGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEAD---RIYTHSYPLLVLNPSGVKKMGELQLAV 507 (789)
Q Consensus 448 v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~---~~~~~~~~L~~~~~~g~~~~G~i~l~~ 507 (789)
|+|||++..+ ....+++||++.|+++++..+ .....||+|......+ ..+|+|.+.+
T Consensus 77 v~V~D~~~~~--~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s-~v~G~~~l~~ 136 (137)
T cd08691 77 IEVKDKFAKS--RPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTD-HVSGQLTFRF 136 (137)
T ss_pred EEEEecCCCC--CccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCC-cEEEEEEEEe
Confidence 9999976532 001278999999999999865 2467899997443322 3369888764
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.1e-15 Score=136.61 Aligned_cols=105 Identities=18% Similarity=0.280 Sum_probs=87.7
Q ss_pred CCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCC---CceEEE
Q 003882 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITL 448 (789)
Q Consensus 377 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v 448 (789)
.+..|.|.|+|++|+||+.++. .|.+||||+|.+.+ ...+|+++++++||+|||.|.|.+..+ ...|.|
T Consensus 9 ~~~~~~L~V~Vi~a~~L~~~d~---~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~ 85 (133)
T cd08384 9 NTQRRGLIVGIIRCVNLAAMDA---NGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEI 85 (133)
T ss_pred cCCCCEEEEEEEEEcCCCCcCC---CCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEE
Confidence 3445899999999999998743 47899999999842 458999999999999999999998753 468999
Q ss_pred EEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeee
Q 003882 449 GVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLV 491 (789)
Q Consensus 449 ~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 491 (789)
+|||++..+ ++++||.+.+++.. .+....+||++..
T Consensus 86 ~V~d~d~~~-----~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 86 TVWDKDIGK-----SNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EEEeCCCCC-----CccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 999999865 78999999999986 3445578998753
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-14 Score=134.84 Aligned_cols=102 Identities=20% Similarity=0.313 Sum_probs=86.3
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeC---CCceEEEEEE
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLGVF 451 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~ 451 (789)
.+.|.|.|++|+||+.++ .+.+||||+|.+.+ .+.+|++++++.||.|||.|.|.+.. ....|.|+|+
T Consensus 14 ~~~L~V~V~~a~nL~~~~----~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~ 89 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD----HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVM 89 (137)
T ss_pred CCeEEEEEEEecCCCccc----CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEE
Confidence 369999999999999874 46799999998832 35799999999999999999999864 2468999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
|.+..+ ++++||++.|+......+...++|..+.
T Consensus 90 ~~~~~~-----~~~~lG~v~ig~~~~~~~~~~~hW~~~~ 123 (137)
T cd08409 90 QSGGVR-----KSKLLGRVVLGPFMYARGKELEHWNDML 123 (137)
T ss_pred eCCCCC-----CcceEEEEEECCcccCCChHHHHHHHHH
Confidence 999865 8899999999987777677778888875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.8e-14 Score=130.51 Aligned_cols=104 Identities=13% Similarity=0.175 Sum_probs=85.2
Q ss_pred CCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC---C---EEEeeccccCCCCCccccEEEEEEeC---CCceEEE
Q 003882 378 QPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG---L---KWVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITL 448 (789)
Q Consensus 378 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~---~---~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v 448 (789)
+..+.|.|+|++|+||+.++ ..|.+||||++.+. + .+.||++++++.||+|||.|.|.+.. ....|.|
T Consensus 12 ~~~~~L~V~VikarnL~~~~---~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 12 ALTGRLSVEVIKGSNFKNLA---MNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred CCCCeEEEEEEEecCCCccc---cCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 34579999999999999874 45789999999883 2 25799999999999999999999974 3569999
Q ss_pred EEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 449 GVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 449 ~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
+|||.+.++ ++++||.+.+++..... ...++|+.+.
T Consensus 89 ~V~~~~~~~-----~~~~iG~v~l~~~~~~~-~~~~hW~~~l 124 (138)
T cd08408 89 SVYNKRKMK-----RKEMIGWFSLGLNSSGE-EEEEHWNEMK 124 (138)
T ss_pred EEEECCCCC-----CCcEEEEEEECCcCCCc-hHHHHHHHHH
Confidence 999999875 88999999999876532 2336787775
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-14 Score=133.85 Aligned_cols=105 Identities=23% Similarity=0.308 Sum_probs=85.7
Q ss_pred CCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC--C---EEEeeccccCCCCCccccEEEEEEeCC---CceEEE
Q 003882 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG--L---KWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITL 448 (789)
Q Consensus 377 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v 448 (789)
.+..|.|+|+|++|++|+.++. .|.+||||+|.+. + ...+|+++++++||.|||.|.|.+... ...|.|
T Consensus 10 ~~~~~~L~V~v~~A~~L~~~d~---~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~ 86 (134)
T cd08403 10 LPTAGRLTLTIIKARNLKAMDI---TGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLII 86 (134)
T ss_pred cCCCCEEEEEEEEeeCCCcccc---CCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 3445899999999999998743 5789999999983 2 357999999999999999999998642 347999
Q ss_pred EEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeee
Q 003882 449 GVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLV 491 (789)
Q Consensus 449 ~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 491 (789)
+|||++.++ .+++||++.|++.. .++...+|+++..
T Consensus 87 ~v~d~~~~~-----~~~~IG~~~l~~~~--~~~~~~~w~~~~~ 122 (134)
T cd08403 87 AVVDYDRVG-----HNELIGVCRVGPNA--DGQGREHWNEMLA 122 (134)
T ss_pred EEEECCCCC-----CCceeEEEEECCCC--CCchHHHHHHHHH
Confidence 999999876 79999999999873 3445578888753
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-14 Score=134.17 Aligned_cols=103 Identities=24% Similarity=0.353 Sum_probs=88.3
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEE
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVF 451 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~ 451 (789)
.+.|.|.|++|+||+..+ ..+.+||||++.+.+ ...+|+++.++.||.|||.|.|.+... ...|.|+||
T Consensus 13 ~~~L~V~v~~a~~L~~~~---~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~ 89 (134)
T cd00276 13 AERLTVVVLKARNLPPSD---GKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVV 89 (134)
T ss_pred CCEEEEEEEEeeCCCCcc---CCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEE
Confidence 369999999999999874 357899999999843 257999999999999999999998764 578999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeec
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVL 492 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 492 (789)
|.+..+ .+++||.+.+++++ .+...+.|++|...
T Consensus 90 d~~~~~-----~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 90 DKDSVG-----RNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred ecCCCC-----CCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 998864 78999999999999 56667999999754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=121.53 Aligned_cols=93 Identities=26% Similarity=0.477 Sum_probs=73.6
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCC---
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNC--- 454 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~--- 454 (789)
|.|+|.+|+||+ +.+||||++.++. ..+||+++++|+||+|||.|.|++.. ...|.+.|||++
T Consensus 1 L~V~V~~A~~L~--------~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~ 71 (118)
T cd08686 1 LNVIVHSAQGFK--------QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSK 71 (118)
T ss_pred CEEEEEeCCCCC--------CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccc
Confidence 579999999995 4689999998842 46999999999999999999999874 779999999983
Q ss_pred ----CCCCCCCCCCCccEEEEEECcc--cccCceEeeeEee
Q 003882 455 ----HLGGSGTKPDSRIGKVRIRLST--LEADRIYTHSYPL 489 (789)
Q Consensus 455 ----~~~~~~~~~d~~lG~~~i~l~~--l~~~~~~~~~~~L 489 (789)
.. +.|+++|++.|.|.. +....+....+.|
T Consensus 72 ~~~d~~-----~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~ 107 (118)
T cd08686 72 VKLDGE-----GTDAIMGKGQIQLDPQSLQTKKWQEKVISM 107 (118)
T ss_pred cccccc-----CcccEEEEEEEEECHHHhccCCeeEEEEEe
Confidence 33 379999888777644 4444444444544
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.3e-15 Score=151.21 Aligned_cols=103 Identities=23% Similarity=0.437 Sum_probs=92.3
Q ss_pred EEEEEEEEeecCCCCCCCCCCCeEEEEEEC-----CeEEeeecccCCCCCCccCceeEEEeeCC-CCCeEEEEEEEccCC
Q 003882 218 YLRVNVIEAQDVEPLDKSQLPQAFVEAQVG-----NQVLKTKLCPTRTTNPLWNEDLIFVAAEP-FEEQLVLTVENKVTP 291 (789)
Q Consensus 218 ~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~-----~~~~kT~~~~~~t~nP~wne~f~f~~~~~-~~~~l~i~V~d~d~~ 291 (789)
.|.|+|.+|+||.++|.+|.+||||++.+- ..+++|++++. ++||+|||+|+|.+... .+..|.|+|||+|..
T Consensus 181 ~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT 259 (683)
T KOG0696|consen 181 VLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT 259 (683)
T ss_pred eEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEecccccccceeEEEEeccccc
Confidence 599999999999999999999999999995 25789999997 99999999999998554 566899999999999
Q ss_pred CCCCceEEEEEeccccccccCCCCCcceeEEcccc
Q 003882 292 AKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKF 326 (789)
Q Consensus 292 ~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 326 (789)
++++++|+.++.+++|.+ ...+.||.|..+
T Consensus 260 sRNDFMGslSFgisEl~K-----~p~~GWyKlLsq 289 (683)
T KOG0696|consen 260 SRNDFMGSLSFGISELQK-----APVDGWYKLLSQ 289 (683)
T ss_pred ccccccceecccHHHHhh-----cchhhHHHHhhh
Confidence 999999999999999974 347789998876
|
|
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-13 Score=126.49 Aligned_cols=98 Identities=26% Similarity=0.371 Sum_probs=81.7
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeCC----CceEEEEEE
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG-----LKWVRTRTLVDNFNPKWNEQYTWEVYDP----CTVITLGVF 451 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~f~v~~~----~~~l~v~v~ 451 (789)
+.|+|+|++|++|+..+ ..+.+||||++.+. ....||++++++.||.|||.|.|..... ...+.|+||
T Consensus 15 ~~L~V~v~~a~~L~~~~---~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~ 91 (123)
T cd04035 15 SALHCTIIRAKGLKAMD---ANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVL 91 (123)
T ss_pred CEEEEEEEEeeCCCCCC---CCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEE
Confidence 69999999999999774 34789999999872 2469999999999999999999964432 468999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccCceEeeeE
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSY 487 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~ 487 (789)
|++.. .+++||.+.++++++..+.....|+
T Consensus 92 d~~~~------~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 92 DEDRF------GNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred EcCCc------CCeeEEEEEEEcccCCCCcceEeec
Confidence 98874 5789999999999999877555544
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.6e-14 Score=128.01 Aligned_cols=89 Identities=27% Similarity=0.424 Sum_probs=78.7
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEE--EeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKW--VRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGG 458 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~--~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~ 458 (789)
.|+|.|++|+||+.++ ..+.+||||++.++++. .||+++++++||+|||.|.|.+..+ ...|.|+|||++.++
T Consensus 1 ~lrV~Vi~a~~L~~~d---~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~- 76 (124)
T cd04037 1 LVRVYVVRARNLQPKD---PNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLG- 76 (124)
T ss_pred CEEEEEEECcCCCCCC---CCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCC-
Confidence 3789999999999874 45799999999998876 5788899999999999999998765 578999999999876
Q ss_pred CCCCCCCccEEEEEECcccc
Q 003882 459 SGTKPDSRIGKVRIRLSTLE 478 (789)
Q Consensus 459 ~~~~~d~~lG~~~i~l~~l~ 478 (789)
.|++||++.+++.+..
T Consensus 77 ----~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 77 ----SDDLIGETVIDLEDRF 92 (124)
T ss_pred ----CCceeEEEEEeecccc
Confidence 8899999999999865
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.1e-14 Score=129.21 Aligned_cols=104 Identities=22% Similarity=0.336 Sum_probs=85.1
Q ss_pred cEEEEEEEEEeecCCCCCCCCCCCeEEEEEEC--C---eEEeeecccCCCCCCccCceeEEEeeCC--CCCeEEEEEEEc
Q 003882 216 LWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVG--N---QVLKTKLCPTRTTNPLWNEDLIFVAAEP--FEEQLVLTVENK 288 (789)
Q Consensus 216 ~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~--~---~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~l~i~V~d~ 288 (789)
.+.|.|+|++|++|+..+..+.+||||++.+. + ..++|+++++ +.||.|||.|.|.+... .+..|.|+|||+
T Consensus 14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~ 92 (136)
T cd08405 14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERLRETTLIITVMDK 92 (136)
T ss_pred CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence 34699999999999998888999999999983 2 3578999986 99999999999987532 356799999999
Q ss_pred cCCCCCCceEEEEEeccccccccCCCCCcceeEEcccc
Q 003882 289 VTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKF 326 (789)
Q Consensus 289 d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 326 (789)
+..+++++||++.+++.+.. ....+|+++...
T Consensus 93 ~~~~~~~~lG~~~i~~~~~~------~~~~~w~~~~~~ 124 (136)
T cd08405 93 DRLSRNDLIGKIYLGWKSGG------LELKHWKDMLSK 124 (136)
T ss_pred CCCCCCcEeEEEEECCccCC------chHHHHHHHHhC
Confidence 99899999999999998652 224566666544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.7e-14 Score=123.23 Aligned_cols=79 Identities=25% Similarity=0.460 Sum_probs=69.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeC------
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDR------ 124 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~------ 124 (789)
|.|+|++|+||+ +.+||||++.+++ .+++|+++++|+||+|||+|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~ 73 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVK 73 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEccccccc
Confidence 679999999996 4589999999974 35899999999999999999999974 57999999998
Q ss_pred -CCCCCCceeEEEEEEcc
Q 003882 125 -EIVGRDDYIGKVVFDMN 141 (789)
Q Consensus 125 -~~~~~d~~lG~~~i~l~ 141 (789)
|..++|+++|.+.+.|.
T Consensus 74 ~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 74 LDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred ccccCcccEEEEEEEEEC
Confidence 46678999988888765
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-14 Score=175.83 Aligned_cols=118 Identities=25% Similarity=0.453 Sum_probs=101.8
Q ss_pred CccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCC--ceEEEEEEeCCC
Q 003882 379 PIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYDPC--TVITLGVFDNCH 455 (789)
Q Consensus 379 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~--~~l~v~v~d~~~ 455 (789)
..|.|.|+|++|+||. - ..+++||||++.+|++ +.||++++++.||+|||.|+|.+.+|. ..|+|+|||+|.
T Consensus 1978 ~~G~L~V~V~~a~nl~-~----~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK-Q----SMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred CCcceEEEEeeccccc-c----ccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 4699999999999997 1 2479999999999965 789999999999999999999998864 789999999998
Q ss_pred CCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceE---EEEEEEEee
Q 003882 456 LGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGE---LQLAVRFTC 511 (789)
Q Consensus 456 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~---i~l~~~f~~ 511 (789)
++ ++.+|++.|++.++..++.++.||+|... | ++.|+ |+++++|.+
T Consensus 2053 f~------kd~~G~~~i~l~~vv~~~~~~~~~~L~~~---~-~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2053 FG------KSSLGKVTIQIDRVVMEGTYSGEYSLNPE---S-NKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred cC------CCCCceEEEEHHHHhcCceeeeeeecCcc---c-ccCCCcceEEEEEEecC
Confidence 84 55999999999999999999999999732 2 24577 888887753
|
|
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.6e-14 Score=127.09 Aligned_cols=97 Identities=20% Similarity=0.259 Sum_probs=83.0
Q ss_pred EEEEccCCCCCccCCCCCCcCcEEEEEECCE-------EEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCC--
Q 003882 386 GILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-------WVRTRTLVDNFNPKWNEQYTWEVYD-PCTVITLGVFDNCH-- 455 (789)
Q Consensus 386 ~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-------~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~-- 455 (789)
..++|++|+..+ ..|.+||||+|.+.+. ..||+++++++||+|||.|.|.+.. ....|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d---~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDKD---VLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCCC---CCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc
Confidence 348999999874 3578999999999553 4999999999999999999998753 46789999999996
Q ss_pred --CCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 456 --LGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 456 --~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
.+ ++++||.+.++++++..+.....|++|.
T Consensus 82 ~~~~-----~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 82 KDLS-----DHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCCC-----CCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 54 8899999999999999877778889984
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-13 Score=124.42 Aligned_cols=117 Identities=24% Similarity=0.356 Sum_probs=93.9
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEE------CCEEEeeccccCCC-CCccccEEEEEEeCCC-ceEEEEEEeC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY------GLKWVRTRTLVDNF-NPKWNEQYTWEVYDPC-TVITLGVFDN 453 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~------~~~~~~T~~~~~t~-~P~wne~~~f~v~~~~-~~l~v~v~d~ 453 (789)
.|+|+|++|+||+.++. +..+.+||||++++ +....||+++.++. ||.|||.|.|.+..+. ..|.|+|||+
T Consensus 3 ~l~v~vi~a~~L~~~~~-~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~ 81 (128)
T cd00275 3 TLTIKIISGQQLPKPKG-DKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE 81 (128)
T ss_pred EEEEEEEeeecCCCCCC-CCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence 78999999999998742 13568999999999 34669999988776 9999999999998754 5799999998
Q ss_pred CCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 454 CHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 454 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
+.. ++++||.+.++++++..+ ..|++|....+. ....|.|.+.+.+
T Consensus 82 ~~~------~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~-~~~~~~l~v~~~~ 127 (128)
T cd00275 82 DSG------DDDFLGQACLPLDSLRQG---YRHVPLLDSKGE-PLELSTLFVHIDI 127 (128)
T ss_pred CCC------CCcEeEEEEEEhHHhcCc---eEEEEecCCCCC-CCcceeEEEEEEE
Confidence 864 688999999999999765 367898755332 1335888888764
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-13 Score=123.76 Aligned_cols=90 Identities=21% Similarity=0.347 Sum_probs=78.1
Q ss_pred EEEEEEeeCCCCCCCCCCCCcEEEEEECCe------eeeeccccCCCCCeeccEEEEEccCCC----CceEEEEEEeCCC
Q 003882 57 YVRVEKARDLPTNPVSGSCDPYVEVKLGNY------KGKTRHFEKKSNPEWKQVFAFSKEKIQ----SSVLEVFVRDREI 126 (789)
Q Consensus 57 ~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~------~~~T~~~~~t~nP~wne~f~f~~~~~~----~~~l~v~V~d~~~ 126 (789)
.+-.++|++|+..+..|.+||||+|++.+. .++|+++++|.||+|| +|.|.+..+. ...|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 345679999999999999999999998653 4799999999999999 7888864331 5799999999999
Q ss_pred CCCCceeEEEEEEccccCCCC
Q 003882 127 VGRDDYIGKVVFDMNEVPTRV 147 (789)
Q Consensus 127 ~~~d~~lG~~~i~l~~l~~~~ 147 (789)
.++|++||++.+++.+|....
T Consensus 82 ~~~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 82 SGKHDLIGEFETTLDELLKSS 102 (110)
T ss_pred CCCCcEEEEEEEEHHHHhcCC
Confidence 999999999999999999553
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.4e-14 Score=171.35 Aligned_cols=118 Identities=19% Similarity=0.351 Sum_probs=100.1
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCC-CceEEEEEEeCCCCCC
Q 003882 52 QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQ-SSVLEVFVRDREIVGR 129 (789)
Q Consensus 52 ~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~-~~~l~v~V~d~~~~~~ 129 (789)
.+|.|.|+|++|+||. +..|.+||||+++++++ ++||++++++.||+|||+|.|.++++. .+.|+|+|||+|.++
T Consensus 1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~- 2054 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG- 2054 (2102)
T ss_pred CCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccC-
Confidence 4599999999999998 34789999999999965 789999999999999999999987764 467999999999995
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceE---EEEEEEEe
Q 003882 130 DDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGE---VMLAVWIG 180 (789)
Q Consensus 130 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~---l~l~~~~~ 180 (789)
++.||.++|++.++..+.... .||+|.+... ..|. |.+.+.+.
T Consensus 2055 kd~~G~~~i~l~~vv~~~~~~-----~~~~L~~~~~---k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2055 KSSLGKVTIQIDRVVMEGTYS-----GEYSLNPESN---KDGSSRTLEIEFQWS 2100 (2102)
T ss_pred CCCCceEEEEHHHHhcCceee-----eeeecCcccc---cCCCcceEEEEEEec
Confidence 459999999999999876655 9999996432 2455 88876553
|
|
| >PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-13 Score=145.67 Aligned_cols=180 Identities=24% Similarity=0.380 Sum_probs=127.9
Q ss_pred ccccchhhHHHHHHHHHHHHhHHHHH---HHhcccccccCchhhHHHHHHHHHHHHhcch--h-HHHHHHHHHHHHhhcc
Q 003882 576 HMWSMRRSKANFFRIVSLFSGAISMS---KWLGEVRYWKNPVTTILVHVLFLILICYPEL--I-LPTIFLYMFLIGIWNY 649 (789)
Q Consensus 576 ~~~s~~~~~~n~~rl~~~~~~~~~~~---~~i~~l~~W~~p~~t~~~~~~~~~~~~~~~l--~-~p~~~l~l~~~~~~~~ 649 (789)
+.+|+..|.+|+.||.+.+..++.++ +.+.++++|++|..|..++++|+++|++|.+ + +|++++ ++++++..|
T Consensus 1 p~lS~~ll~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~l-l~~il~~~y 79 (359)
T PF06398_consen 1 PPLSSPLLSSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLL-LFGILLPSY 79 (359)
T ss_pred CCcChHHHHhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 45789999999999999999999999 9999999999999999999999999999998 3 443333 455666666
Q ss_pred ccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh----ccccC
Q 003882 650 RFRPRHPPHMDTKLSWADAVHPDELDEEFDTFPTSKQQDVVRMRYDRLRSVAGRIQTVVGDMATQGERFQA----LLSWR 725 (789)
Q Consensus 650 ~~~~~~~~~~~~~~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~vq~~l~~~a~~~e~~~~----l~~w~ 725 (789)
..++..+.. ... . ..++.+.+.+..|+-.+ . .++.+.+|++ +||.|+.+.+.++.+.. .++|+
T Consensus 80 l~~~p~~~~-~~~-~-----~~~~~~~~~~~~ptl~~-~-s~e~~~nL~d----lQn~m~~~~~~~d~~~~~~~~~~~f~ 146 (359)
T PF06398_consen 80 LYRHPSPTS-SLP-K-----SYEDHNPEPSEGPTLDK-P-SREIVMNLRD----LQNKMEDLSDPYDFLSSFLYPYLNFS 146 (359)
T ss_pred HeecCCCcc-ccc-c-----cccccCCCcCCCCCcch-h-HHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcccccCC
Confidence 665522211 110 0 00011111111111010 1 2455555655 99999999999888874 45799
Q ss_pred CchhhHHHHHHHHHHHHHH----hhhhhHHHHhhhhhh-hccCCcccCC
Q 003882 726 DPRATSLFVIFCLIAAVVL----YVTPFKIITLVAGLF-WLRHPRFRSK 769 (789)
Q Consensus 726 ~p~~t~~~~~~l~~~~~~~----~~iP~r~i~l~~g~~-~~~~P~~r~~ 769 (789)
++..|.+++++|+++.+.+ .++|+|++++++|.. ++.||..++.
T Consensus 147 ~e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp~~~~~ 195 (359)
T PF06398_consen 147 DENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHPPWRQA 195 (359)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCCcHHHH
Confidence 9999999888887776644 458999999999944 7889988753
|
Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p []. |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.44 E-value=5e-13 Score=113.17 Aligned_cols=82 Identities=35% Similarity=0.594 Sum_probs=75.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
|.|+|++|+||...+..+.+||||++.+.+ ..++|+++.++.+|.|||+|.|.+.......|.|+|||++..++|++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~ 80 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL 80 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence 789999999999988888999999999998 67999999999999999999999766666779999999999988999
Q ss_pred eEEEE
Q 003882 133 IGKVV 137 (789)
Q Consensus 133 lG~~~ 137 (789)
||++.
T Consensus 81 iG~~~ 85 (85)
T PF00168_consen 81 IGEVK 85 (85)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-13 Score=144.47 Aligned_cols=121 Identities=28% Similarity=0.524 Sum_probs=107.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCC------
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIV------ 127 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~------ 127 (789)
..++++|+.|.+|.++|..|++||||.+.++..++||++|...+||+|||.|+|...+. ++.+.+.|||.|..
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns-tdrikvrvwded~dlksklr 373 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVWDEDNDLKSKLR 373 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC-CceeEEEEecCcccHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999876 58999999998862
Q ss_pred -----CCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeec
Q 003882 128 -----GRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQ 182 (789)
Q Consensus 128 -----~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 182 (789)
.+|+|||+..|.+..|... .+ .||.|+.+..++...|.|.+.+.+.-.
T Consensus 374 qkl~resddflgqtvievrtlsge--md-----vwynlekrtdksavsgairlhisveik 426 (1283)
T KOG1011|consen 374 QKLTRESDDFLGQTVIEVRTLSGE--MD-----VWYNLEKRTDKSAVSGAIRLHISVEIK 426 (1283)
T ss_pred HHhhhcccccccceeEEEEecccc--hh-----hhcchhhccchhhccceEEEEEEEEEc
Confidence 3789999999999988765 23 899999988777788988888776543
|
|
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-12 Score=115.48 Aligned_cols=88 Identities=20% Similarity=0.229 Sum_probs=73.2
Q ss_pred EEEEEccCCCCCccCCCCCCcCcEEEEEECC------EEEeeccccCCCCCccccEEEEEEeC-----CCceEEEEEEeC
Q 003882 385 VGILSAQGLLPMKTRDGRGTTDAYCVAKYGL------KWVRTRTLVDNFNPKWNEQYTWEVYD-----PCTVITLGVFDN 453 (789)
Q Consensus 385 v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~t~~P~wne~~~f~v~~-----~~~~l~v~v~d~ 453 (789)
+..++|++|+.++ ..+.+||||+|++.+ ..++|+++++++||+|| .|.|++.+ +...|.|+|||+
T Consensus 4 ~~~i~a~~L~~~d---~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~ 79 (110)
T cd04047 4 ELQFSGKKLDKKD---FFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDY 79 (110)
T ss_pred EEEEEeCCCCCCC---CCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEe
Confidence 4457999999874 457899999998843 25999999999999999 68887643 257999999999
Q ss_pred CCCCCCCCCCCCccEEEEEECcccccCc
Q 003882 454 CHLGGSGTKPDSRIGKVRIRLSTLEADR 481 (789)
Q Consensus 454 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 481 (789)
+..+ +|++||++.++++++...+
T Consensus 80 d~~~-----~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 80 DSSG-----KHDLIGEFETTLDELLKSS 102 (110)
T ss_pred CCCC-----CCcEEEEEEEEHHHHhcCC
Confidence 9876 8999999999999998544
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.2e-13 Score=134.58 Aligned_cols=219 Identities=20% Similarity=0.253 Sum_probs=161.2
Q ss_pred EEEEEEEEeecCCCCCCCCCCCeEEEEEECC-----eEEeeecccCCCCCCccCceeEEE--eeCC-CCCeEEEEEEEcc
Q 003882 218 YLRVNVIEAQDVEPLDKSQLPQAFVEAQVGN-----QVLKTKLCPTRTTNPLWNEDLIFV--AAEP-FEEQLVLTVENKV 289 (789)
Q Consensus 218 ~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~-----~~~kT~~~~~~t~nP~wne~f~f~--~~~~-~~~~l~i~V~d~d 289 (789)
.+..++..|++|.+++.++..|||++..++. .+.+|++..+ +.||.|+|...+. ..+. ....+.+.|.|.+
T Consensus 94 ~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~ 172 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHLKVLRKVVCDND 172 (362)
T ss_pred hcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchhhhhhhheeeccCc
Confidence 4789999999999999999999999999974 3477888876 9999999986554 3332 4456788889999
Q ss_pred CCCCCCceEEEEEeccccccccCCCCCcceeEEccccCcccchhcccccccccceEEEEEEEcCcccccCCcccccCCCC
Q 003882 290 TPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQR 369 (789)
Q Consensus 290 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~ 369 (789)
.+..++++|+..+.+..+...+. .....|+.-.-+. +.+.....+.+|.|.+++...
T Consensus 173 ~~~~~~sqGq~r~~lkKl~p~q~--k~f~~cl~~~lp~----~rad~~~~E~rg~i~isl~~~----------------- 229 (362)
T KOG1013|consen 173 KKTHNESQGQSRVSLKKLKPLQR--KSFNICLEKSLPS----ERADRDEDEERGAILISLAYS----------------- 229 (362)
T ss_pred ccccccCcccchhhhhccChhhc--chhhhhhhccCCc----ccccccchhhccceeeeeccC-----------------
Confidence 99999999999988887754332 2233444433321 000011134567776666432
Q ss_pred cccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCC--
Q 003882 370 PTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVYDP-- 442 (789)
Q Consensus 370 ~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~-- 442 (789)
....-+.|.+++|..|..+ |.+|.+||||..++.. .+.+|.+.++|.+|.||++|.|.+..-
T Consensus 230 --------s~~~~l~vt~iRc~~l~ss---Dsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdL 298 (362)
T KOG1013|consen 230 --------STTPGLIVTIIRCSHLASS---DSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDL 298 (362)
T ss_pred --------cCCCceEEEEEEeeeeecc---ccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccch
Confidence 1224788999999999988 4568999999998832 248899999999999999999988752
Q ss_pred -CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcc
Q 003882 443 -CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLST 476 (789)
Q Consensus 443 -~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~ 476 (789)
...+.|.|+|++.- ...+++|-+...+..
T Consensus 299 a~~kv~lsvgd~~~G-----~s~d~~GG~~~g~~r 328 (362)
T KOG1013|consen 299 AYKKVALSVGDYDIG-----KSNDSIGGSMLGGYR 328 (362)
T ss_pred hcceEEEeecccCCC-----cCccCCCcccccccc
Confidence 45899999998873 366788877665444
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.3e-12 Score=142.41 Aligned_cols=127 Identities=17% Similarity=0.270 Sum_probs=108.1
Q ss_pred cEEEEEEEEccCCCCCcc---------------CCCCCCcCcEEEEEECCEE-EeeccccCC-CCCccccEEEEEEeCCC
Q 003882 381 GILEVGILSAQGLLPMKT---------------RDGRGTTDAYCVAKYGLKW-VRTRTLVDN-FNPKWNEQYTWEVYDPC 443 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~---------------~~~~~~~dpyv~v~~~~~~-~~T~~~~~t-~~P~wne~~~f~v~~~~ 443 (789)
|.|.|+|++|++|++++. ..+.+.+||||.|.+++.+ .||+++.+. .||+|||.|.+++.++.
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~ 87 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHMA 87 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccCc
Confidence 899999999999986421 0134678999999998764 799999884 69999999999999999
Q ss_pred ceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEeecC
Q 003882 444 TVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTCLS 513 (789)
Q Consensus 444 ~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~ 513 (789)
+.++|+|.|.|.++ ..+||++.||+.++.+|..+++|+++.+.+.+..+...+|+++++|.+..
T Consensus 88 ~~v~f~vkd~~~~g------~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~ 151 (808)
T PLN02270 88 SNIIFTVKDDNPIG------ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVT 151 (808)
T ss_pred ceEEEEEecCCccC------ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence 99999999999984 66999999999999999999999999877544444456999999998753
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-11 Score=104.77 Aligned_cols=100 Identities=35% Similarity=0.613 Sum_probs=87.0
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECC-eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeE
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN-YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIG 134 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG 134 (789)
|.|+|++|++|......+.++|||.+.+.+ ..++|+++.++.||.|||.|.|.+.......|.|+|||.+..+++.++|
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig 80 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG 80 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence 579999999998866677899999999998 8899999999999999999999997745689999999999987899999
Q ss_pred EEEEEccccC-CCCCCCCCCCCeeEEc
Q 003882 135 KVVFDMNEVP-TRVPPDSPLAPQWYRL 160 (789)
Q Consensus 135 ~~~i~l~~l~-~~~~~~~~~~~~w~~L 160 (789)
.+.+++.++. ...... .|++|
T Consensus 81 ~~~~~l~~l~~~~~~~~-----~~~~l 102 (102)
T cd00030 81 EVEIPLSELLDSGKEGE-----LWLPL 102 (102)
T ss_pred EEEEeHHHhhhcCCcCc-----ceecC
Confidence 9999999998 443333 78765
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.2e-12 Score=134.66 Aligned_cols=123 Identities=27% Similarity=0.412 Sum_probs=102.0
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCC-
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGS- 459 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~- 459 (789)
..++++|+.|+||.+.| ..|++||||.+.+|..+.||+++-..+||+|||.|.|+.....+.|++.|||+|.--..
T Consensus 295 akitltvlcaqgl~akd---ktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksk 371 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKD---KTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSK 371 (1283)
T ss_pred eeeEEeeeecccceecc---cCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHH
Confidence 58999999999999884 45899999999999999999999999999999999999999899999999998852210
Q ss_pred -----CCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 460 -----GTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 460 -----~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
....|||+|+..|.+..+. +..+.||.|.....+.. .+|.|+|.|..
T Consensus 372 lrqkl~resddflgqtvievrtls--gemdvwynlekrtdksa-vsgairlhisv 423 (1283)
T KOG1011|consen 372 LRQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSA-VSGAIRLHISV 423 (1283)
T ss_pred HHHHhhhcccccccceeEEEEecc--cchhhhcchhhccchhh-ccceEEEEEEE
Confidence 2457999999999999985 45689999975544333 35877766644
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.1e-11 Score=108.45 Aligned_cols=92 Identities=25% Similarity=0.348 Sum_probs=79.3
Q ss_pred EEEEEEEeeCCCCCC--CCC--CCCcEEEEEECC---eeeeeccccCCCC--CeeccEEEEEccC---------------
Q 003882 56 LYVRVEKARDLPTNP--VSG--SCDPYVEVKLGN---YKGKTRHFEKKSN--PEWKQVFAFSKEK--------------- 111 (789)
Q Consensus 56 L~V~v~~a~~L~~~~--~~g--~~dpyv~v~~~~---~~~~T~~~~~t~n--P~wne~f~f~~~~--------------- 111 (789)
|+|.|.+|+|++..+ ..| .+||||++.+.+ .+++|.+..+++| |+||+.|.|++..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 899999999966543 355 499999999986 4689999999999 9999999998643
Q ss_pred --------CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCC
Q 003882 112 --------IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRV 147 (789)
Q Consensus 112 --------~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~ 147 (789)
.....|.++|||.|.+++|++||++.++|..+....
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 235789999999999999999999999999988764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.4e-11 Score=103.41 Aligned_cols=93 Identities=34% Similarity=0.590 Sum_probs=83.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe---eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNY---KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~---~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
|.|+|++|++|......+..+|||++++.+. .++|+++.++.||.|||+|.|.+.......|.|+|||.+..+.+.+
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ 81 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF 81 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence 7899999999998876578999999999975 7899999999999999999999977656899999999998777999
Q ss_pred eEEEEEEccccCCCCC
Q 003882 133 IGKVVFDMNEVPTRVP 148 (789)
Q Consensus 133 lG~~~i~l~~l~~~~~ 148 (789)
+|.+.+++.++..+..
T Consensus 82 ~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 82 IGQVTIPLSDLLLGGR 97 (101)
T ss_pred eEEEEEEHHHcccCcc
Confidence 9999999999887643
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=126.88 Aligned_cols=118 Identities=17% Similarity=0.195 Sum_probs=96.2
Q ss_pred eEEEEEEEEeeCCCCC-----CCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEe
Q 003882 54 FYLYVRVEKARDLPTN-----PVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRD 123 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~-----~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d 123 (789)
..|.|+|+.|.++... +....+||||+|.+.| .+++|++..++.||+|||+|.|.+..++-..|+|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 5799999999987521 2234579999999976 25678888888999999999999988877889999999
Q ss_pred CCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 124 REIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 124 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
+|..++++|+|++.+|+..|..+- ++++|.+..|..-..-.|.+.+.+
T Consensus 489 ~D~~~~ddfiGQ~~LPv~~Lr~Gy--------R~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 489 YEVSTADAFCGQTCLPVSELIEGI--------RAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred cCCCCCCcEEEEEecchHHhcCCc--------eeEeccCCCcCCCCCceEEEEEEe
Confidence 998888999999999999999874 678999888764344556665543
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.9e-11 Score=100.85 Aligned_cols=82 Identities=30% Similarity=0.505 Sum_probs=74.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCeEEEEEECC---eEEeeecccCCCCCCccCceeEEEeeCCCCCeEEEEEEEccCCCCCC
Q 003882 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGN---QVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVTPAKDE 295 (789)
Q Consensus 219 L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~---~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~~~~d~ 295 (789)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++++ +.+|.|+|+|.|.+..+..+.|.|+|||++..++++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~ 79 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDE 79 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecccccceEEEEEECCCCCCCC
Confidence 689999999999988888999999999987 6799999987 899999999999987776777999999999988899
Q ss_pred ceEEEE
Q 003882 296 PLGRLR 301 (789)
Q Consensus 296 ~iG~~~ 301 (789)
+||++.
T Consensus 80 ~iG~~~ 85 (85)
T PF00168_consen 80 LIGEVK 85 (85)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999874
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=101.05 Aligned_cols=99 Identities=28% Similarity=0.479 Sum_probs=84.7
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-EEEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCCCCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-KWVRTRTLVDNFNPKWNEQYTWEVYD-PCTVITLGVFDNCHLGGSG 460 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-~~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~~~~~~ 460 (789)
|.|.|++|++|.... ..+..||||.+.+.+ ..++|+++.++.||.|||.|.|++.. ....+.|+|||.+..+
T Consensus 1 l~v~i~~~~~l~~~~---~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~--- 74 (102)
T cd00030 1 LRVTVIEARNLPAKD---LNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS--- 74 (102)
T ss_pred CEEEEEeeeCCCCcC---CCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC---
Confidence 468999999998652 345799999999987 88999999999999999999999997 6789999999988764
Q ss_pred CCCCCccEEEEEECcccc-cCceEeeeEee
Q 003882 461 TKPDSRIGKVRIRLSTLE-ADRIYTHSYPL 489 (789)
Q Consensus 461 ~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L 489 (789)
.+.+||++.+++.++. .......|++|
T Consensus 75 --~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 --KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred --CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 6889999999999998 55556677664
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.2e-10 Score=125.79 Aligned_cols=118 Identities=19% Similarity=0.310 Sum_probs=95.4
Q ss_pred eEEEEEEEEeeCCCCC------CCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEE
Q 003882 54 FYLYVRVEKARDLPTN------PVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVR 122 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~------~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~ 122 (789)
..|.|+|+.|.+++.. +.....||||+|.+-+ .+++|+++.++.||+|||+|.|.+..++-..|+|.|+
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~ 549 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR 549 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence 5799999999987532 1123359999999976 4679999999999999999999987776678999999
Q ss_pred eCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 123 DREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 123 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
|+|..+.++|+|++.+++..|..+- +|++|.+..|..-..-.|.+.+++
T Consensus 550 D~D~~~~ddfiGq~~lPv~~Lr~Gy--------R~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 550 EYDMSEKDDFGGQTCLPVSELRPGI--------RSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred ecCCCCCCCeEEEEEcchhHhcCCc--------eeEeCcCCCCCCCCCEEEEEEEEe
Confidence 9999888999999999999999874 799999887764333445555443
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.5e-10 Score=103.32 Aligned_cols=94 Identities=21% Similarity=0.285 Sum_probs=77.7
Q ss_pred EEEEEEEccCCCCCccC-CCCCCcCcEEEEEECC---EEEeeccccCCCC--CccccEEEEEEeCC--------------
Q 003882 383 LEVGILSAQGLLPMKTR-DGRGTTDAYCVAKYGL---KWVRTRTLVDNFN--PKWNEQYTWEVYDP-------------- 442 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~-~~~~~~dpyv~v~~~~---~~~~T~~~~~t~~--P~wne~~~f~v~~~-------------- 442 (789)
|+|.|.+|+|++..+.. .+...+||||++.+.+ .+.+|.+.++++| |.||+.|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 78999999997765432 1222599999999854 5699999999999 99999999987651
Q ss_pred ----------CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCc
Q 003882 443 ----------CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADR 481 (789)
Q Consensus 443 ----------~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 481 (789)
...|.|+|||+|.++ .|++||.+.++|..+..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~s-----~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKFS-----PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccCcceEecCcEEEEEEEECcccC-----CCCcceEEEEEhhhccccc
Confidence 358999999999986 8999999999999987654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.8e-10 Score=99.31 Aligned_cols=91 Identities=32% Similarity=0.525 Sum_probs=79.1
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE---EEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK---WVRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLGG 458 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~---~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~~ 458 (789)
+.|.|++|++|..... .+..+|||++++++. ..+|+++.++.||.|||.|.|.+..+ ...|.|+|||.+..+
T Consensus 2 l~i~i~~~~~l~~~~~---~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~- 77 (101)
T smart00239 2 LTVKIISARNLPKKDK---KGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG- 77 (101)
T ss_pred eEEEEEEeeCCCCCCC---CCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc-
Confidence 6789999999987532 257899999999764 79999999999999999999999987 889999999988753
Q ss_pred CCCCCCCccEEEEEECcccccCc
Q 003882 459 SGTKPDSRIGKVRIRLSTLEADR 481 (789)
Q Consensus 459 ~~~~~d~~lG~~~i~l~~l~~~~ 481 (789)
.+.+||.+.+++.++..+.
T Consensus 78 ----~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 78 ----RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred ----CCceeEEEEEEHHHcccCc
Confidence 6899999999999987654
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.5e-10 Score=126.93 Aligned_cols=125 Identities=19% Similarity=0.322 Sum_probs=105.3
Q ss_pred ccCceeEEEEEEEEeeCCCCCC------------------CCCCCCcEEEEEECCe-eeeeccccCC-CCCeeccEEEEE
Q 003882 49 LVEQMFYLYVRVEKARDLPTNP------------------VSGSCDPYVEVKLGNY-KGKTRHFEKK-SNPEWKQVFAFS 108 (789)
Q Consensus 49 ~~~~~~~L~V~v~~a~~L~~~~------------------~~g~~dpyv~v~~~~~-~~~T~~~~~t-~nP~wne~f~f~ 108 (789)
+.+ |.|.|+|.+|++|++.+ ..+++||||.|.+++. ..||+++.+. .||.|||+|++.
T Consensus 5 llh--g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~ 82 (808)
T PLN02270 5 LLH--GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIY 82 (808)
T ss_pred eee--cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEe
Confidence 445 88999999999998631 1357899999999985 5799999885 599999999999
Q ss_pred ccCCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCc-cceEEEEEEEEeec
Q 003882 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRK-VKGEVMLAVWIGTQ 182 (789)
Q Consensus 109 ~~~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~-~~G~l~l~~~~~~~ 182 (789)
+.... ..|.|.|+|.+.++ ..+||.+.|++.+|..+...+ .||++.+..++.. ....|++++.|.+.
T Consensus 83 ~ah~~-~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~-----~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 83 CAHMA-SNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVD-----RWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred eccCc-ceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccc-----cEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 98875 89999999999986 569999999999999987766 9999999887642 33478899988764
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-11 Score=132.61 Aligned_cols=126 Identities=29% Similarity=0.558 Sum_probs=109.1
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------------e------------------eeeeccccCCCCCe
Q 003882 52 QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-------------Y------------------KGKTRHFEKKSNPE 100 (789)
Q Consensus 52 ~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-------------~------------------~~~T~~~~~t~nP~ 100 (789)
|..-|.|.+.+|+||.++|.+|-+|||+...+.+ + .+-|.++++|+||.
T Consensus 112 P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPk 191 (1103)
T KOG1328|consen 112 PSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPK 191 (1103)
T ss_pred CcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcc
Confidence 4467889999999999999999999999987743 0 12578899999999
Q ss_pred eccEEEEEccCCCCceEEEEEEeCCCC---------------------------------C---CCceeEEEEEEccccC
Q 003882 101 WKQVFAFSKEKIQSSVLEVFVRDREIV---------------------------------G---RDDYIGKVVFDMNEVP 144 (789)
Q Consensus 101 wne~f~f~~~~~~~~~l~v~V~d~~~~---------------------------------~---~d~~lG~~~i~l~~l~ 144 (789)
|+|.|.|.+++..++.+++.+||+|.- + .|||||.+.|+|+++.
T Consensus 192 W~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP 271 (1103)
T KOG1328|consen 192 WSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP 271 (1103)
T ss_pred hhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence 999999999999999999999999861 1 3899999999999999
Q ss_pred CCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeecC
Q 003882 145 TRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQA 183 (789)
Q Consensus 145 ~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~ 183 (789)
... .+ +||+|++++..+++.|.+++.+|+.+..
T Consensus 272 ~~G-ld-----~WFkLepRS~~S~VqG~~~LklwLsT~e 304 (1103)
T KOG1328|consen 272 PDG-LD-----QWFKLEPRSDKSKVQGQVKLKLWLSTKE 304 (1103)
T ss_pred cch-HH-----HHhccCcccccccccceEEEEEEEeeec
Confidence 864 34 8999999998889999999999998643
|
|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-09 Score=119.07 Aligned_cols=119 Identities=21% Similarity=0.285 Sum_probs=89.6
Q ss_pred cEEEEEEEEccCCCCC--ccCCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCCC-ceEEEEEEe
Q 003882 381 GILEVGILSAQGLLPM--KTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVYDPC-TVITLGVFD 452 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~--~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~~-~~l~v~v~d 452 (789)
..|.|+|+.+++++.. ++.+.....||||+|.+.| ...+|++..++.||.|||+|.|.+..|. ..|.|+|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~D 488 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVYD 488 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEEe
Confidence 5899999999998621 1112234689999999843 3478877778999999999999998875 589999999
Q ss_pred CCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEE
Q 003882 453 NCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVR 508 (789)
Q Consensus 453 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 508 (789)
+|..+ .|+++|+..+|++.|..|- ++++|.+.++.... .-+|-+++.
T Consensus 489 ~D~~~-----~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~-~~~Ll~~f~ 535 (537)
T PLN02223 489 YEVST-----ADAFCGQTCLPVSELIEGI---RAVPLYDERGKACS-STMLLTRFK 535 (537)
T ss_pred cCCCC-----CCcEEEEEecchHHhcCCc---eeEeccCCCcCCCC-CceEEEEEE
Confidence 99865 7899999999999999884 67899765432222 234544443
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-09 Score=121.19 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=96.6
Q ss_pred eEEEEEEEEeeCCCCC------CCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEE
Q 003882 54 FYLYVRVEKARDLPTN------PVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVR 122 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~------~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~ 122 (789)
..|.|+|+.+.+++.. +.....||||+|.+-+ .+++|++..++.||+|||+|.|.+.-++-..|+|.|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~ 548 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH 548 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence 5799999999987421 2233579999999965 3568999999999999999999987777789999999
Q ss_pred eCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 123 DREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 123 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
|+|..++|+|+|+..+|+..|..+- +.++|.+..|..-..-.|.+.+.+
T Consensus 549 d~d~~~~ddfiGQ~~lPv~~Lr~Gy--------R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 549 EHDINEKDDFGGQTCLPVSEIRQGI--------HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred ECCCCCCCCEEEEEEcchHHhhCcc--------ceEeccCCCcCCCCCCeeEEEEEe
Confidence 9999889999999999999999874 678999988764344566666654
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=99.02 E-value=3e-09 Score=118.60 Aligned_cols=118 Identities=19% Similarity=0.297 Sum_probs=95.5
Q ss_pred eEEEEEEEEeeCCC----C--CCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEE
Q 003882 54 FYLYVRVEKARDLP----T--NPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVR 122 (789)
Q Consensus 54 ~~L~V~v~~a~~L~----~--~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~ 122 (789)
..|.|+|+.|.++. . .+.....||||+|.+.+ .+++|+++.++.||+|||+|.|.+..++-..|+|.|+
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~ 531 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH 531 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence 57999999998753 1 11234579999999965 3679999999999999999999987776789999999
Q ss_pred eCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 123 DREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 123 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
|+|..+.++|+|++.+++..|..+- +.++|.+..|..-..-.|.+.+.+
T Consensus 532 d~D~~~~ddfigq~~lPv~~Lr~Gy--------R~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 532 EYDMSEKDDFGGQTCLPVWELSQGI--------RAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred ECCCCCCCcEEEEEEcchhhhhCcc--------ceEEccCCCcCCCCCeeEEEEEEe
Confidence 9998888999999999999999874 678999888764344566666543
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.4e-10 Score=127.91 Aligned_cols=115 Identities=24% Similarity=0.301 Sum_probs=99.6
Q ss_pred cccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-----eeeeccccCCCCCeeccEEEEE---ccC
Q 003882 40 SERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-----KGKTRHFEKKSNPEWKQVFAFS---KEK 111 (789)
Q Consensus 40 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-----~~~T~~~~~t~nP~wne~f~f~---~~~ 111 (789)
..+++++|.. +.|+|.|..|++|+--..+..+||||++++.+. ++||+++++|.||.|||.+.+. .+.
T Consensus 1514 qV~LsIsY~~----~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~ 1589 (1639)
T KOG0905|consen 1514 QVKLSISYNN----GTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEI 1589 (1639)
T ss_pred eEEEEEEEcC----ceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhh
Confidence 5789999984 779999999999965554678999999999873 6799999999999999999887 345
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccC
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR 163 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 163 (789)
+...+|++.||..+.+..+.+||.+.|+|.++...+... .||.|...
T Consensus 1590 l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~-----~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1590 LQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESV-----GWYNLGAC 1636 (1639)
T ss_pred hhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhc-----ceeecccc
Confidence 567899999999999999999999999999998876544 89999753
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.5e-09 Score=117.60 Aligned_cols=120 Identities=23% Similarity=0.293 Sum_probs=92.3
Q ss_pred ccEEEEEEEEccCCCCCc---cCCCCCCcCcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeCC-CceEEEEE
Q 003882 380 IGILEVGILSAQGLLPMK---TRDGRGTTDAYCVAKYG-----LKWVRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGV 450 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~---~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v 450 (789)
...|.|+|+.+++|+.-. ..+.....||||+|.+- ....+|+++.++.||.|||.|.|++..| -..+.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V 548 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV 548 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence 358999999999985321 11222345999999883 3568999999999999999999999876 46899999
Q ss_pred EeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEe
Q 003882 451 FDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFT 510 (789)
Q Consensus 451 ~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 510 (789)
+|+|..+ .++++|++.|||+.|..|- +|++|.+.. |.. -+...|-++|.
T Consensus 549 ~D~D~~~-----~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~--G~~-l~~a~Llv~f~ 597 (599)
T PLN02952 549 REYDMSE-----KDDFGGQTCLPVSELRPGI---RSVPLHDKK--GEK-LKNVRLLMRFI 597 (599)
T ss_pred EecCCCC-----CCCeEEEEEcchhHhcCCc---eeEeCcCCC--CCC-CCCEEEEEEEE
Confidence 9999865 7899999999999999885 589997553 332 24556655554
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.2e-09 Score=117.08 Aligned_cols=119 Identities=17% Similarity=0.227 Sum_probs=98.5
Q ss_pred eEEEEEEEEeeCCCC---C---CCCCCCCcEEEEEECC-----eeeeeccccCCCCCee-ccEEEEEccCCCCceEEEEE
Q 003882 54 FYLYVRVEKARDLPT---N---PVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEW-KQVFAFSKEKIQSSVLEVFV 121 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~---~---~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~w-ne~f~f~~~~~~~~~l~v~V 121 (789)
..|.|+|+.|.+|+. . +.....||||+|.+.+ .+++|+++.++.||+| ||+|.|.+..++-..|+|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V 510 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV 510 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence 469999999998731 1 1223479999999865 3579999988899999 99999998777678999999
Q ss_pred EeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 122 RDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 122 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
+|+|..+.++|+|++.+++..|..+- +.++|.+..|..-....|.+.+.+.
T Consensus 511 ~D~d~~~~d~figq~~lPv~~Lr~GY--------R~VpL~~~~G~~l~~atLfv~~~~~ 561 (567)
T PLN02228 511 QDYDNDTQNDFAGQTCLPLPELKSGV--------RAVRLHDRAGKAYKNTRLLVSFALD 561 (567)
T ss_pred EeCCCCCCCCEEEEEEcchhHhhCCe--------eEEEccCCCCCCCCCeEEEEEEEEc
Confidence 99998888999999999999998874 6789999888754567788888765
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.3e-09 Score=117.99 Aligned_cols=119 Identities=19% Similarity=0.325 Sum_probs=98.1
Q ss_pred eEEEEEEEEeeCCCCC-C---CCCCCCcEEEEEECC-----eeeeec-cccCCCCCeeccEEEEEccCCCCceEEEEEEe
Q 003882 54 FYLYVRVEKARDLPTN-P---VSGSCDPYVEVKLGN-----YKGKTR-HFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRD 123 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~-~---~~g~~dpyv~v~~~~-----~~~~T~-~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d 123 (789)
..|.|+|+.+.++... + .+..+||||.|.+-| ...+|+ +..++-||.|+|+|.|.+..++-.-|+|.|+|
T Consensus 616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d 695 (746)
T KOG0169|consen 616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHD 695 (746)
T ss_pred ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEe
Confidence 4799999999976543 2 134689999999976 256999 45556699999999999988877899999999
Q ss_pred CCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 124 REIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 124 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
+|..++|+|+|+.++|+..|..+- +.++|.+..|+.-....|.+.+.+.
T Consensus 696 ~d~~~~ddF~GQ~tlP~~~L~~Gy--------RhVpL~~~~G~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 696 YDYIGKDDFIGQTTLPVSELRQGY--------RHVPLLSREGEALSSASLFVRIAIV 744 (746)
T ss_pred cCCCCcccccceeeccHHHhhCce--------eeeeecCCCCccccceeEEEEEEEe
Confidence 999999999999999999999874 5679999887755667777777654
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.2e-09 Score=89.73 Aligned_cols=85 Identities=22% Similarity=0.400 Sum_probs=73.0
Q ss_pred EEEEEEEeeCCCCCC---CCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCc
Q 003882 56 LYVRVEKARDLPTNP---VSGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDD 131 (789)
Q Consensus 56 L~V~v~~a~~L~~~~---~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~ 131 (789)
|.|+|..|+|+.-.+ ..+.+||||.+++++. +.||++ +.||.|||+|.|++.. ..++.+.|||+.. ...-
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk--~nEiel~VyDk~~-~~~~ 74 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK--NNEEEVIVYDKGG-DQPV 74 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC--CcEEEEEEEeCCC-Ceec
Confidence 679999999998776 5788999999999986 889987 5899999999999953 6899999999976 3566
Q ss_pred eeEEEEEEccccCCC
Q 003882 132 YIGKVVFDMNEVPTR 146 (789)
Q Consensus 132 ~lG~~~i~l~~l~~~ 146 (789)
.+|..-+.+++|...
T Consensus 75 Pi~llW~~~sdi~Ee 89 (109)
T cd08689 75 PVGLLWLRLSDIAEE 89 (109)
T ss_pred ceeeehhhHHHHHHH
Confidence 889999998888754
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.2e-09 Score=111.60 Aligned_cols=120 Identities=26% Similarity=0.450 Sum_probs=101.0
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccE-EEEEEeCC---CceEEEEEEeCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQ-YTWEVYDP---CTVITLGVFDNCHL 456 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~-~~f~v~~~---~~~l~v~v~d~~~~ 456 (789)
|.|.|+|..|++|+.||+. ....|.||.|++++..++|.+-.+++||.||.. |.|+|.+. ...|.|+++|+|..
T Consensus 3 gkl~vki~a~r~lpvmdka--sd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dty 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKA--SDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTY 80 (1169)
T ss_pred CcceeEEEeccCCcccccc--cccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccc
Confidence 7899999999999999864 457899999999999999999999999999965 89999863 56999999999998
Q ss_pred CCCCCCCCCccEEEEEECcccc----------cCceEeeeEeeeecCCCCCccceEEEEEEEEe
Q 003882 457 GGSGTKPDSRIGKVRIRLSTLE----------ADRIYTHSYPLLVLNPSGVKKMGELQLAVRFT 510 (789)
Q Consensus 457 ~~~~~~~d~~lG~~~i~l~~l~----------~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 510 (789)
+ .+|-||++.|++..|. .|.....|+|..+.- .| -+|+|.+-++..
T Consensus 81 s-----andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-hg--irgeinvivkvd 136 (1169)
T KOG1031|consen 81 S-----ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-HG--IRGEINVIVKVD 136 (1169)
T ss_pred c-----cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-cc--ccceeEEEEEEe
Confidence 7 8899999999999865 234678999997542 23 358888777643
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=114.34 Aligned_cols=121 Identities=17% Similarity=0.237 Sum_probs=91.0
Q ss_pred ccEEEEEEEEccCCCCCcc---CCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCCC-ceEEEEE
Q 003882 380 IGILEVGILSAQGLLPMKT---RDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVYDPC-TVITLGV 450 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~---~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~~-~~l~v~v 450 (789)
...|.|+|+.+++++.... .+.....||||+|.+-| ...+|+++.++.||.|||+|.|++.-|. ..|.|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V 547 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV 547 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence 3589999999999753211 12233579999998832 3478998889999999999999998874 7999999
Q ss_pred EeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 451 FDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 451 ~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
+|+|..+ .|+++|+..||++.|..|- +.++|.+..+.... .-+|-+++.|
T Consensus 548 ~d~d~~~-----~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 548 HEHDINE-----KDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred EECCCCC-----CCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCC-CCeeEEEEEe
Confidence 9999865 8999999999999999873 56788765332222 2455555443
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-08 Score=112.70 Aligned_cols=121 Identities=22% Similarity=0.279 Sum_probs=90.6
Q ss_pred ccEEEEEEEEccCCCC--Cc-cCCCCCCcCcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeCCC-ceEEEEE
Q 003882 380 IGILEVGILSAQGLLP--MK-TRDGRGTTDAYCVAKYG-----LKWVRTRTLVDNFNPKWNEQYTWEVYDPC-TVITLGV 450 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~--~~-~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~f~v~~~~-~~l~v~v 450 (789)
...|+|+|+.+++++. .+ ..+.....||||+|.+. ....||+++.++.||.|||.|.|.+..|. ..|.|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V 530 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV 530 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence 3589999999998531 11 11223457999999983 34589999999999999999999998774 7999999
Q ss_pred EeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 451 FDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 451 ~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
+|+|..+ .+++||+..||++.|..|- +.++|.+..+.... .-++-+.+.|
T Consensus 531 ~d~D~~~-----~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 531 HEYDMSE-----KDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred EECCCCC-----CCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCC-CeeEEEEEEe
Confidence 9998765 7899999999999999873 56788765432222 2355554443
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.4e-09 Score=87.92 Aligned_cols=87 Identities=22% Similarity=0.292 Sum_probs=72.6
Q ss_pred EEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCC
Q 003882 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGT 461 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~ 461 (789)
|.|+|..|+|+.-.......+.+||||.|++++. ++||++. -||.|||.|.|+| +....+.|.|||...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~V-dk~nEiel~VyDk~~------ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPV-EKNNEEEVIVYDKGG------ 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEe-cCCcEEEEEEEeCCC------
Confidence 5788999999987653224578899999999886 8999984 7999999999999 568899999999754
Q ss_pred CCCCccEEEEEECccccc
Q 003882 462 KPDSRIGKVRIRLSTLEA 479 (789)
Q Consensus 462 ~~d~~lG~~~i~l~~l~~ 479 (789)
...-.||-..|.+++|..
T Consensus 71 ~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 71 DQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred CeecceeeehhhHHHHHH
Confidence 256789999999999863
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.1e-10 Score=120.43 Aligned_cols=103 Identities=24% Similarity=0.395 Sum_probs=91.1
Q ss_pred ccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-------eeeeccccCCCCCeeccEEEEEccCC-
Q 003882 41 ERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-------KGKTRHFEKKSNPEWKQVFAFSKEKI- 112 (789)
Q Consensus 41 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-------~~~T~~~~~t~nP~wne~f~f~~~~~- 112 (789)
..+...|...+ ..|.|.|+.|+++.+-|.+|.+||||+|.+++. .++|+|+.+|+||+|+|+|+|.+...
T Consensus 936 lsvr~~y~~n~--q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~ 1013 (1103)
T KOG1328|consen 936 LSVRAYYNGNA--QTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEP 1013 (1103)
T ss_pred eEEEEEeeccc--cchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccc
Confidence 34566777777 789999999999999999999999999999983 46999999999999999999998432
Q ss_pred ---CCceEEEEEEeCCCCCCCceeEEEEEEccccCC
Q 003882 113 ---QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPT 145 (789)
Q Consensus 113 ---~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~ 145 (789)
+...|.|+|.|+|-++.+||-|++.+.|.++..
T Consensus 1014 c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1014 CSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred cccccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 367899999999999999999999999988774
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-08 Score=111.52 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=94.5
Q ss_pred ccEEEEEEEEccCCCC---CccCCCCCCcCcEEEEEEC-----CEEEeeccccCCCCCcc-ccEEEEEEeCCC-ceEEEE
Q 003882 380 IGILEVGILSAQGLLP---MKTRDGRGTTDAYCVAKYG-----LKWVRTRTLVDNFNPKW-NEQYTWEVYDPC-TVITLG 449 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~---~~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~w-ne~~~f~v~~~~-~~l~v~ 449 (789)
...|+|+|+.+++|+. .+..+.....||||+|.+. ...+||+++.++.||.| ||.|.|.+..|. ..|.|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 3589999999999742 1111223347999999883 24589999999999999 999999998874 689999
Q ss_pred EEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEeec
Q 003882 450 VFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTCL 512 (789)
Q Consensus 450 v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 512 (789)
|+|+|..+ .|++||++.||++.|..|- +.++|.+..+... ...+|-+.+.+.+.
T Consensus 510 V~D~d~~~-----~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l-~~atLfv~~~~~~~ 563 (567)
T PLN02228 510 VQDYDNDT-----QNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAY-KNTRLLVSFALDPP 563 (567)
T ss_pred EEeCCCCC-----CCCEEEEEEcchhHhhCCe---eEEEccCCCCCCC-CCeEEEEEEEEcCc
Confidence 99998765 7899999999999998773 5678876543222 24678888777654
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.4e-08 Score=106.20 Aligned_cols=200 Identities=14% Similarity=0.192 Sum_probs=142.4
Q ss_pred CCCCCCCCCcEEEEEEC-------------------CeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCC--
Q 003882 68 TNPVSGSCDPYVEVKLG-------------------NYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREI-- 126 (789)
Q Consensus 68 ~~~~~g~~dpyv~v~~~-------------------~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~-- 126 (789)
..|..++.||.|.+... .+..+|.++.+.+||.|-+.|.....-...+.|++.++|.+.
T Consensus 4 ~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~ 83 (529)
T KOG1327|consen 4 AYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRT 83 (529)
T ss_pred ccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCcc
Confidence 33445566777766552 124489999999999999999988766667999999999875
Q ss_pred --CCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeecCCCcCCccCCCCCcccCCCccc
Q 003882 127 --VGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFPEAWHSDAATVEGEGVF 204 (789)
Q Consensus 127 --~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 204 (789)
+...+|+|++...+..+....... .+|..+.+.....|+|.+.+.-... +
T Consensus 84 ~~l~~~dflg~~~c~l~~ivs~~~~~-------~~l~~~~~~~~~~g~iti~aee~~~-----------~---------- 135 (529)
T KOG1327|consen 84 PDLSSADFLGTAECTLSQIVSSSGLT-------GPLLLKPGKNAGSGTITISAEEDES-----------D---------- 135 (529)
T ss_pred CCcchhcccceeeeehhhhhhhhhhh-------hhhhcccCccCCcccEEEEeecccc-----------c----------
Confidence 346789999999999998764332 2233332233446777666521100 0
Q ss_pred cccccccccCccEEEEEEEEEeecCCCCCCCCCCCeEEEEEEC--C----eEEeeecccCCCCCCccCceeEEEe----e
Q 003882 205 NIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVG--N----QVLKTKLCPTRTTNPLWNEDLIFVA----A 274 (789)
Q Consensus 205 ~~~~~~~~~~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~--~----~~~kT~~~~~~t~nP~wne~f~f~~----~ 274 (789)
.....-..+|++|..++..+++|||..++-. . ..++|.+.++ +++|.|.... ... .
T Consensus 136 ------------~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~~~-i~~~~l~~ 201 (529)
T KOG1327|consen 136 ------------NDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAPFS-ISLQSLCS 201 (529)
T ss_pred ------------CceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceecc-CCCCcccccc-cchhhhcc
Confidence 0122334458999999999999999988653 2 4688999987 9999998742 221 1
Q ss_pred CCCCCeEEEEEEEccCCCCCCceEEEEEecccccc
Q 003882 275 EPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIER 309 (789)
Q Consensus 275 ~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~ 309 (789)
......+.+.++|++..+++++||.+..++.++..
T Consensus 202 ~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 202 KDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred cCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 22356788999999998999999999999998863
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.9e-09 Score=110.50 Aligned_cols=126 Identities=28% Similarity=0.455 Sum_probs=105.4
Q ss_pred eEEEEEEEEeeCCCCCCC-CCCCCcEEEEEECCeeeeeccccCCCCCeec-cEEEEEcc--CCCCceEEEEEEeCCCCCC
Q 003882 54 FYLYVRVEKARDLPTNPV-SGSCDPYVEVKLGNYKGKTRHFEKKSNPEWK-QVFAFSKE--KIQSSVLEVFVRDREIVGR 129 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~-~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wn-e~f~f~~~--~~~~~~l~v~V~d~~~~~~ 129 (789)
|.|.|+|+.|++|+.+|. +...|.||++++++..+||.+..+++||.|| +.|.|.+. ++++..|++.+.|+|..+.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa 82 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA 82 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence 678899999999999986 4457999999999999999999999999998 56888884 5678999999999999999
Q ss_pred CceeEEEEEEccccCCCCCC-----CCCCCCeeEEcccCCCCCccceEEEEEEEEee
Q 003882 130 DDYIGKVVFDMNEVPTRVPP-----DSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGT 181 (789)
Q Consensus 130 d~~lG~~~i~l~~l~~~~~~-----~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 181 (789)
+|-||.+.|++..|...... .......|+++.+.-- ..+|+|.+-+.+.-
T Consensus 83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih--girgeinvivkvdl 137 (1169)
T KOG1031|consen 83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH--GIRGEINVIVKVDL 137 (1169)
T ss_pred ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc--cccceeEEEEEEee
Confidence 99999999999988765322 1355679999987642 36889888776643
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-08 Score=112.04 Aligned_cols=120 Identities=23% Similarity=0.379 Sum_probs=92.9
Q ss_pred EEEEEEEEccCCCCCccCC-CCCCcCcEEEEEECC-----EEEeecccc-CCCCCccccEEEEEEeCCC-ceEEEEEEeC
Q 003882 382 ILEVGILSAQGLLPMKTRD-GRGTTDAYCVAKYGL-----KWVRTRTLV-DNFNPKWNEQYTWEVYDPC-TVITLGVFDN 453 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~-~~~~~dpyv~v~~~~-----~~~~T~~~~-~t~~P~wne~~~f~v~~~~-~~l~v~v~d~ 453 (789)
.|.|+|+.++|+++..... .+..+||||.|++.| ...+|+++. ++.||.|+|+|+|++..|. +-|.|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 7999999999877643222 235689999999854 348999555 6889999999999999874 6899999999
Q ss_pred CCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEe
Q 003882 454 CHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFT 510 (789)
Q Consensus 454 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 510 (789)
|..+ +|+|+|+..||++.|..| -+.+||.+..+... ...+|-+.+.+.
T Consensus 697 d~~~-----~ddF~GQ~tlP~~~L~~G---yRhVpL~~~~G~~~-~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIG-----KDDFIGQTTLPVSELRQG---YRHVPLLSREGEAL-SSASLFVRIAIV 744 (746)
T ss_pred CCCC-----cccccceeeccHHHhhCc---eeeeeecCCCCccc-cceeEEEEEEEe
Confidence 9986 899999999999999877 35678876532211 246676766654
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-08 Score=110.64 Aligned_cols=119 Identities=17% Similarity=0.284 Sum_probs=97.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eeeeeccccCCCCCeec-cEEEEEccCCCCceEEEEEEeCCC
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN------YKGKTRHFEKKSNPEWK-QVFAFSKEKIQSSVLEVFVRDREI 126 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~------~~~~T~~~~~t~nP~wn-e~f~f~~~~~~~~~l~v~V~d~~~ 126 (789)
-.|.|.|+.|+.|+... .|.+.|+|+|.+-+ ..++|.++.+++||+|| |+|.|.+.+++-..|+|.|+|.|.
T Consensus 1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEecccc
Confidence 56999999999999554 45678999999976 24577788889999999 999999999988999999999999
Q ss_pred CCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEee
Q 003882 127 VGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGT 181 (789)
Q Consensus 127 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 181 (789)
++...|||++.+|+..+..+- .-++|.+.-.+.-....|.+.+.+.+
T Consensus 1144 fs~~~FiaqA~yPv~~ik~Gf--------RsVpLkN~ySEdlELaSLLv~i~m~~ 1190 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKSGF--------RSVPLKNGYSEDLELASLLVFIEMRP 1190 (1267)
T ss_pred cCCcceeeeeecchhhhhccc--------eeeecccCchhhhhhhhheeeeEecc
Confidence 998899999999999999874 45677776544334556666666543
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.9e-08 Score=109.92 Aligned_cols=121 Identities=21% Similarity=0.272 Sum_probs=92.8
Q ss_pred ccEEEEEEEEccCCCCCccC-C-CCCCcCcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCC-ceEEEEEEeCCC
Q 003882 380 IGILEVGILSAQGLLPMKTR-D-GRGTTDAYCVAKYGLKW-VRTRTLVDNFNPKWNEQYTWEVYDPC-TVITLGVFDNCH 455 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~-~-~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~f~v~~~~-~~l~v~v~d~~~ 455 (789)
-|.|.++|++|+-+...-.. . -+...||||.|.+++.+ .|| .+..||.|||.|.+++.++. ..++|+|.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--- 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--- 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec---
Confidence 38999999999833221000 0 01223999999998764 799 55669999999999999987 789999999
Q ss_pred CCCCCCCCCCccEEEEEECcccccCce-EeeeEeeeecCCCCCccceEEEEEEEEeecCh
Q 003882 456 LGGSGTKPDSRIGKVRIRLSTLEADRI-YTHSYPLLVLNPSGVKKMGELQLAVRFTCLSL 514 (789)
Q Consensus 456 ~~~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~~ 514 (789)
...+||++.||+.++..|.. .+.|+++.+.+.+.... .+|+++++|.+...
T Consensus 83 -------~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~ 134 (758)
T PLN02352 83 -------KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPAEL 134 (758)
T ss_pred -------CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEhhh
Confidence 24599999999999999866 89999998765433322 59999999988643
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.9e-08 Score=105.30 Aligned_cols=99 Identities=21% Similarity=0.354 Sum_probs=81.4
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC-----CEEE-eeccccCCCCCccc-cEEEEEEeCC-CceEEEEEEe
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG-----LKWV-RTRTLVDNFNPKWN-EQYTWEVYDP-CTVITLGVFD 452 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-----~~~~-~T~~~~~t~~P~wn-e~~~f~v~~~-~~~l~v~v~d 452 (789)
-.|.|.|+.|+.|+. .++|.+.|||.|++- ..++ +|.++.+.+||+|| |.|+|+|..| ...|.|.|+|
T Consensus 1065 ~~lsv~vigaRHL~k----~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK----LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYE 1140 (1267)
T ss_pred eEEEEEEeecccccc----CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEec
Confidence 489999999999984 456778899999872 3344 44455679999999 9999999998 5799999999
Q ss_pred CCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeee
Q 003882 453 NCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLV 491 (789)
Q Consensus 453 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 491 (789)
+|.++ ...|||++..|+..+..|- +.+||.+
T Consensus 1141 eDmfs-----~~~FiaqA~yPv~~ik~Gf---RsVpLkN 1171 (1267)
T KOG1264|consen 1141 EDMFS-----DPNFLAQATYPVKAIKSGF---RSVPLKN 1171 (1267)
T ss_pred ccccC-----Ccceeeeeecchhhhhccc---eeeeccc
Confidence 99997 5669999999999998773 4567753
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.4e-07 Score=99.51 Aligned_cols=181 Identities=19% Similarity=0.184 Sum_probs=126.2
Q ss_pred eEEeeecccCCCCCCccCceeEEEeeCCCCCeEEEEEEEccC----CCCCCceEEEEEeccccccccCCCCCcceeEEcc
Q 003882 249 QVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLTVENKVT----PAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLE 324 (789)
Q Consensus 249 ~~~kT~~~~~~t~nP~wne~f~f~~~~~~~~~l~i~V~d~d~----~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~ 324 (789)
+..+|.++.. ..||.|.+.|.........+.+.+.++|.+. ....+++|++...++++..... ...-+.++
T Consensus 41 e~~rte~i~~-~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~----~~~~l~~~ 115 (529)
T KOG1327|consen 41 EVGRTEVIRN-VLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSG----LTGPLLLK 115 (529)
T ss_pred cccceeeeec-cCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhh----hhhhhhcc
Confidence 3457888887 9999999999888777677899999998764 4567899999999998864321 11111122
Q ss_pred ccCcccchhcccccccccceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCC
Q 003882 325 KFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGT 404 (789)
Q Consensus 325 ~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~ 404 (789)
.. .....|.|.+.+.-... + -......++|.+|...| ..++
T Consensus 116 ~~-----------~~~~~g~iti~aee~~~----~---------------------~~~~~~~~~~~~ld~kd---~f~k 156 (529)
T KOG1327|consen 116 PG-----------KNAGSGTITISAEEDES----D---------------------NDVVQFSFRAKNLDPKD---FFSK 156 (529)
T ss_pred cC-----------ccCCcccEEEEeecccc----c---------------------CceeeeeeeeeecCccc---cccc
Confidence 11 12235666665531100 0 02223345688898774 4589
Q ss_pred cCcEEEEEE---CC---EEEeeccccCCCCCccccEEEEEEe-----CCCceEEEEEEeCCCCCCCCCCCCCccEEEEEE
Q 003882 405 TDAYCVAKY---GL---KWVRTRTLVDNFNPKWNEQYTWEVY-----DPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIR 473 (789)
Q Consensus 405 ~dpyv~v~~---~~---~~~~T~~~~~t~~P~wne~~~f~v~-----~~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~ 473 (789)
+|||..+.- ++ ..++|.+++++++|.|-+ |..+.. ++...+.+.+||++..+ ++++||++..+
T Consensus 157 sd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~-----~~~~ig~~~tt 230 (529)
T KOG1327|consen 157 SDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG-----KHDLIGKFQTT 230 (529)
T ss_pred CCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC-----CcCceeEeccc
Confidence 999999865 22 239999999999999986 444333 34578999999999865 78999999999
Q ss_pred Cccccc
Q 003882 474 LSTLEA 479 (789)
Q Consensus 474 l~~l~~ 479 (789)
++++..
T Consensus 231 ~~~~~~ 236 (529)
T KOG1327|consen 231 LSELQE 236 (529)
T ss_pred HHHhcc
Confidence 999863
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.7e-08 Score=85.00 Aligned_cols=107 Identities=25% Similarity=0.348 Sum_probs=81.8
Q ss_pred EEEEEEEccCCCCCccC------C----CCCCcCcEEEEEE----CCEEEeeccccCCCCCccccEEEEEEe--------
Q 003882 383 LEVGILSAQGLLPMKTR------D----GRGTTDAYCVAKY----GLKWVRTRTLVDNFNPKWNEQYTWEVY-------- 440 (789)
Q Consensus 383 l~v~v~~a~~L~~~~~~------~----~~~~~dpyv~v~~----~~~~~~T~~~~~t~~P~wne~~~f~v~-------- 440 (789)
+.|.|++|.||+.+-.. + ..-..++||++.+ +++..+|+++.++..|+||..++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46889999999875322 1 1224689999985 567899999999999999999999775
Q ss_pred CC--------CceEEEEEEeCCCCCCCC-----CCCCCccEEEEEECcccccC-ceEeeeEee
Q 003882 441 DP--------CTVITLGVFDNCHLGGSG-----TKPDSRIGKVRIRLSTLEAD-RIYTHSYPL 489 (789)
Q Consensus 441 ~~--------~~~l~v~v~d~~~~~~~~-----~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L 489 (789)
+. ...+.++||++..-+.++ ..+|-.||.+.||+.+|... ....+|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 11 458999999987643221 34678999999999998754 467899985
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.6e-07 Score=102.66 Aligned_cols=121 Identities=14% Similarity=0.245 Sum_probs=94.1
Q ss_pred cccCceeEEEEEEEEeeCCCCC----C-CCCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEE
Q 003882 48 DLVEQMFYLYVRVEKARDLPTN----P-VSGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFV 121 (789)
Q Consensus 48 ~~~~~~~~L~V~v~~a~~L~~~----~-~~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V 121 (789)
.+.+ |.|.++|.+|+-+... + .+...||||.|.+++. ..|| .+..||.|||+|.+.+.......|.|.|
T Consensus 6 ~~lh--g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~v 80 (758)
T PLN02352 6 KFFH--GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITL 80 (758)
T ss_pred cccc--cceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEE
Confidence 4556 8899999999844321 1 1122399999999985 4688 5666999999999999887657899999
Q ss_pred EeCCCCCCCceeEEEEEEccccCCCCC-CCCCCCCeeEEcccCCCCCccceEEEEEEEEeecC
Q 003882 122 RDREIVGRDDYIGKVVFDMNEVPTRVP-PDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQA 183 (789)
Q Consensus 122 ~d~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~ 183 (789)
+| ...+||.+.|++.+|..+.. .+ .||++.+..++......|++++.|.+..
T Consensus 81 k~-----~~~~ig~~~~p~~~~~~g~~~~~-----~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 133 (758)
T PLN02352 81 KT-----KCSILGRFHIQAHQIVTEASFIN-----GFFPLIMENGKPNPELKLRFMLWFRPAE 133 (758)
T ss_pred ec-----CCeEEEEEEEEHHHhhCCCcccc-----eEEEcccCCCCCCCCCEEEEEEEEEEhh
Confidence 99 36799999999999998754 45 9999999887643225888999987643
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00038 Score=73.45 Aligned_cols=244 Identities=18% Similarity=0.279 Sum_probs=158.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEcc-------CCCCceEEEEEEeCC-CC
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKE-------KIQSSVLEVFVRDRE-IV 127 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~-------~~~~~~l~v~V~d~~-~~ 127 (789)
+.|+|++|+|.+... ...-.+..+++++...|-.+..+..|.||..+.+.+. ..+...|++++|-.+ .-
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~ 78 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST 78 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence 689999999999763 3456888999999999999999999999999999863 234688999999988 44
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCC-CccceEEEEEEEEeecCCCcCCccC--C----CCCcc---
Q 003882 128 GRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDD-RKVKGEVMLAVWIGTQADEAFPEAW--H----SDAAT--- 197 (789)
Q Consensus 128 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~~~~~d~~~~~~~--~----~~~~~--- 197 (789)
+..+.+|.+.++|..............+.||+|...+.+ .+.+-+|.+.+.+.+.......+.. . +....
T Consensus 79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~~~~~~~ 158 (340)
T PF12416_consen 79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPPRQGHVP 158 (340)
T ss_pred CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCcccCCCc
Confidence 678899999999999822222222355699999887332 2457889999888755432111000 0 00000
Q ss_pred -----cCC----------CccccccccccccCccEEEEEEEEEeecCCCCCC----C--CCCCeEEEEEECCeEEeeecc
Q 003882 198 -----VEG----------EGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDK----S--QLPQAFVEAQVGNQVLKTKLC 256 (789)
Q Consensus 198 -----~~~----------~~~~~~~~~~~~~~~~~~L~V~v~~ar~L~~~~~----~--~~~dpyv~v~l~~~~~kT~~~ 256 (789)
..+ ++.-..... ........|.|++..|.+|...-. . +...-|....+-+....|..-
T Consensus 159 ~~~~~~~~~~l~~~l~~~eg~lQIGp~-~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~F 237 (340)
T PF12416_consen 159 PPNSLLSPATLIPVLLEDEGLLQIGPP-DLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEPF 237 (340)
T ss_pred ccccccCccceeEEEccCCceEeeCCc-hhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeeec
Confidence 000 000000000 012345568999999999876621 1 234566777777766777766
Q ss_pred cCCCCCCccC-ceeE-EEeeCC---------CCCeEEEEEEEccCCCCCCceEEEEEecccccc
Q 003882 257 PTRTTNPLWN-EDLI-FVAAEP---------FEEQLVLTVENKVTPAKDEPLGRLRLSLNVIER 309 (789)
Q Consensus 257 ~~~t~nP~wn-e~f~-f~~~~~---------~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~ 309 (789)
.. ..+|.+. |.-. +.+... ....|.|.++.. +..||.+.+++..+..
T Consensus 238 ~~-l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g-----~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 238 KS-LSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG-----NQSLGSTSVPLQPLLP 295 (340)
T ss_pred cc-cCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC-----CcEEEEEEEEhhhccC
Confidence 55 7777664 2222 443211 234566666653 6789999999999864
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.2e-06 Score=100.77 Aligned_cols=102 Identities=21% Similarity=0.265 Sum_probs=85.2
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC--C---EEEeeccccCCCCCccccEEEEEEeC----CCceEEEEEE
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG--L---KWVRTRTLVDNFNPKWNEQYTWEVYD----PCTVITLGVF 451 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~v~ 451 (789)
|.|.|.|.-|+||+-. ..+..+||||+.++- . .+.||+++++|.||.|||..++.-.. ....|.++||
T Consensus 1524 ~~LtImV~H~K~L~~L---qdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVl 1600 (1639)
T KOG0905|consen 1524 GTLTIMVMHAKGLALL---QDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVL 1600 (1639)
T ss_pred ceEEEEhhhhcccccc---cCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeee
Confidence 6999999999999654 334579999999982 2 35899999999999999988776322 1468999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
..+.+. .+.++|.+.|+|.++...++...||+|.
T Consensus 1601 s~~~~~-----en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1601 SNGGLL-----ENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred ccccee-----eeeeeeeeecchhhcchhhhhcceeecc
Confidence 998875 7889999999999998888778999984
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0039 Score=65.93 Aligned_cols=239 Identities=15% Similarity=0.188 Sum_probs=156.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCeEEEEEECCeEEeeecccCCCCCCccCceeEEEeeC-------CCCCeEEEEEEEcc-C
Q 003882 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAE-------PFEEQLVLTVENKV-T 290 (789)
Q Consensus 219 L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~~~~kT~~~~~~t~nP~wne~f~f~~~~-------~~~~~l~i~V~d~d-~ 290 (789)
+.|.|++|++.+... ...-.|..++.++...|..+.. +..|.||..+.+.+.. .....|++++|..+ .
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~ 77 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS 77 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence 678999999999763 3467899999999999998886 9999999999998743 24557999998887 4
Q ss_pred CCCCCceEEEEEecccc-ccccCCCCCcceeEEccccCcccchhcccccccccceEEEEEEEcCccccc----C-----C
Q 003882 291 PAKDEPLGRLRLSLNVI-ERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVM----D-----E 360 (789)
Q Consensus 291 ~~~d~~iG~~~i~l~~l-~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~----d-----~ 360 (789)
.+..+.||.+.++|..+ ...........+||+|.... .+-.+.+-+|.+.++++...... + +
T Consensus 78 ~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~--------~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~ 149 (340)
T PF12416_consen 78 TGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSS--------SKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKP 149 (340)
T ss_pred CCcceeccEEEEEccccccccccccccCCCeeEccccc--------cccccCCccEEEEEEEeccccccCCccccccccC
Confidence 67788999999999887 11112334678999998762 11122345677777765433210 0 0
Q ss_pred cccccC-------CCCcc--cccc------c--CC-----CccEEEEEEEEccCCCCCccC---CCCCCcCcEEEEEECC
Q 003882 361 STMYIS-------DQRPT--ARQL------W--KQ-----PIGILEVGILSAQGLLPMKTR---DGRGTTDAYCVAKYGL 415 (789)
Q Consensus 361 ~~~~~~-------d~~~~--~~~~------~--~~-----~~g~l~v~v~~a~~L~~~~~~---~~~~~~dpyv~v~~~~ 415 (789)
.+.... ...+. .+.+ + .+ ..-.|.|+|-.|++|..+... +..+....|...++=|
T Consensus 150 ~p~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllG 229 (340)
T PF12416_consen 150 APPRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLG 229 (340)
T ss_pred CCcccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecC
Confidence 011111 00010 0000 0 11 234788899999998766211 1112355666677755
Q ss_pred EEEeeccccCCCCCcc--ccEEEEEEeCC----------CceEEEEEEeCCCCCCCCCCCCCccEEEEEECccccc
Q 003882 416 KWVRTRTLVDNFNPKW--NEQYTWEVYDP----------CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEA 479 (789)
Q Consensus 416 ~~~~T~~~~~t~~P~w--ne~~~f~v~~~----------~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~ 479 (789)
....|..-+...+|.| ++...+.+... ...|.|.++. .+..||.+.|++..+..
T Consensus 230 n~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~----------g~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 230 NDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC----------GNQSLGSTSVPLQPLLP 295 (340)
T ss_pred cEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee----------CCcEEEEEEEEhhhccC
Confidence 5677777777778877 44443666532 3578888888 35579999999999864
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.6e-06 Score=84.08 Aligned_cols=114 Identities=25% Similarity=0.323 Sum_probs=92.2
Q ss_pred ecccCceeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccCCCCceEEEE
Q 003882 47 YDLVEQMFYLYVRVEKARDLPTNPVS-GSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVF 120 (789)
Q Consensus 47 ~~~~~~~~~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~ 120 (789)
.++....|.|+|.|++|++|..+... ..++|||+|++.+ .+.+|+...+|.+|-+-+...|.-..+ ...|.+.
T Consensus 262 ~~~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~-~k~Lq~t 340 (405)
T KOG2060|consen 262 IALMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPP-GKYLQGT 340 (405)
T ss_pred hhhhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCC-ccEEEEE
Confidence 34445668999999999999876432 2689999999975 256999999999999999988887555 6899999
Q ss_pred EE-eCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC
Q 003882 121 VR-DREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165 (789)
Q Consensus 121 V~-d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 165 (789)
|| |+.++..+.|+|.+.+-+.+|..... ....||+|-....
T Consensus 341 v~gdygRmd~k~fmg~aqi~l~eL~ls~~----~~igwyKlfgsss 382 (405)
T KOG2060|consen 341 VWGDYGRMDHKSFMGVAQIMLDELNLSSS----PVIGWYKLFGSSS 382 (405)
T ss_pred EeccccccchHHHhhHHHHHhhhhccccc----cceeeeeccCCcc
Confidence 99 67777788999999999999998751 2238999987653
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.7e-05 Score=69.39 Aligned_cols=101 Identities=21% Similarity=0.356 Sum_probs=75.7
Q ss_pred EEEEEEEeeCCCCCC-------------CCCCCCcEEEEEEC----CeeeeeccccCCCCCeeccEEEEEcc--------
Q 003882 56 LYVRVEKARDLPTNP-------------VSGSCDPYVEVKLG----NYKGKTRHFEKKSNPEWKQVFAFSKE-------- 110 (789)
Q Consensus 56 L~V~v~~a~~L~~~~-------------~~g~~dpyv~v~~~----~~~~~T~~~~~t~nP~wne~f~f~~~-------- 110 (789)
|.|.|++|.+|.+.- ..-.-|+||++.+. ++..+|+++.++--|+|+..+.|...
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 467888888886421 11235899999853 35789999999999999999999853
Q ss_pred -------CCCCceEEEEEEeCCCC----------CCCceeEEEEEEccccCCCCCCCCCCCCeeEEc
Q 003882 111 -------KIQSSVLEVFVRDREIV----------GRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160 (789)
Q Consensus 111 -------~~~~~~l~v~V~d~~~~----------~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 160 (789)
-++...+.++||....- .+|-.||.+.||+.+|..... -...||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rs----GitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRS----GITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhccc----CccccccC
Confidence 12467899999987652 256689999999999987632 23489975
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.88 E-value=2e-05 Score=89.61 Aligned_cols=95 Identities=14% Similarity=0.176 Sum_probs=79.4
Q ss_pred eeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEE-EEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEE
Q 003882 44 TSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYV-EVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVR 122 (789)
Q Consensus 44 ~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv-~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~ 122 (789)
.++-+.-. |...++|++|+ ++. .|||. .+++|.+.+||.+.++|.||+||+...|.+........++.||
T Consensus 46 ~~~~~~~~--~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 116 (644)
T PLN02964 46 AVSAEDFS--GIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVF 116 (644)
T ss_pred ceeccccc--CeEEEEeehhh----hcc---CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEE
Confidence 34445555 99999999997 332 58875 5667789999999999999999999999997666667899999
Q ss_pred eCCCCCCCceeEEEEEEccccCCCC
Q 003882 123 DREIVGRDDYIGKVVFDMNEVPTRV 147 (789)
Q Consensus 123 d~~~~~~d~~lG~~~i~l~~l~~~~ 147 (789)
|.+.+++++.+|.+++++.++...+
T Consensus 117 ~~~~~s~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 117 ETNRLSKNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred ecCCCCHHHhhhheeecHhhccHHH
Confidence 9999999999999999998887664
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.6e-05 Score=87.67 Aligned_cols=87 Identities=21% Similarity=0.339 Sum_probs=73.8
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEE-EECCEEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCCC
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVA-KYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCHLG 457 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v-~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~~ 457 (789)
.|.+.+++++|+ |+ ..|+|+.+ .+|.+++||.+.++|.||+||+...|.|... .....|.|||.+.++
T Consensus 53 ~~~~~~~~~~~~----~~------~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 122 (644)
T PLN02964 53 SGIALLTLVGAE----MK------FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLS 122 (644)
T ss_pred cCeEEEEeehhh----hc------cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence 489999999987 32 34888766 7799999999999999999999999988853 334699999999987
Q ss_pred CCCCCCCCccEEEEEECcccccCc
Q 003882 458 GSGTKPDSRIGKVRIRLSTLEADR 481 (789)
Q Consensus 458 ~~~~~~d~~lG~~~i~l~~l~~~~ 481 (789)
.++++|.|.++|.++...+
T Consensus 123 -----~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 123 -----KNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred -----HHHhhhheeecHhhccHHH
Confidence 8999999999999887654
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.68 E-value=5.1e-05 Score=61.45 Aligned_cols=89 Identities=19% Similarity=0.273 Sum_probs=68.2
Q ss_pred EEEEEEeeCCCCCCC-CCCCCcEEEEEE--C-CeeeeeccccCCCCCeeccEEEEEcc--CCCCceEEEEEEeCCCCCCC
Q 003882 57 YVRVEKARDLPTNPV-SGSCDPYVEVKL--G-NYKGKTRHFEKKSNPEWKQVFAFSKE--KIQSSVLEVFVRDREIVGRD 130 (789)
Q Consensus 57 ~V~v~~a~~L~~~~~-~g~~dpyv~v~~--~-~~~~~T~~~~~t~nP~wne~f~f~~~--~~~~~~l~v~V~d~~~~~~d 130 (789)
-|+|++++||.-... +..+.-|++--+ . +..+||++.++..||+|.|+|.|.+. .++.-.|.|.|+.. ..+.
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~--~~RK 79 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ--TPRK 79 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc--CCcc
Confidence 378999999976542 333445666433 3 35789999999999999999999974 55677888999984 4478
Q ss_pred ceeEEEEEEccccCCCC
Q 003882 131 DYIGKVVFDMNEVPTRV 147 (789)
Q Consensus 131 ~~lG~~~i~l~~l~~~~ 147 (789)
+.||.+.+.+.++-.++
T Consensus 80 e~iG~~sL~l~s~geeE 96 (103)
T cd08684 80 RTIGECSLSLRTLSTQE 96 (103)
T ss_pred ceeeEEEeecccCCHHH
Confidence 99999999999887664
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00014 Score=59.04 Aligned_cols=95 Identities=14% Similarity=0.298 Sum_probs=69.1
Q ss_pred EEEEEEeecCCCCC-CCCCCCeEEEEEEC---CeEEeeecccCCCCCCccCceeEEEeeC--CCCCeEEEEEEEccCCCC
Q 003882 220 RVNVIEAQDVEPLD-KSQLPQAFVEAQVG---NQVLKTKLCPTRTTNPLWNEDLIFVAAE--PFEEQLVLTVENKVTPAK 293 (789)
Q Consensus 220 ~V~v~~ar~L~~~~-~~~~~dpyv~v~l~---~~~~kT~~~~~~t~nP~wne~f~f~~~~--~~~~~l~i~V~d~d~~~~ 293 (789)
-|+++.|+++.-.. ....+..|++-.+. ....||+... +..||.|+|+|.|.+.. ..+-.|.|.|+. ...+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rr-gs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKE-GSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhc-CCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 47889999986433 34556678876654 2456777766 49999999999998754 345578888887 5678
Q ss_pred CCceEEEEEeccccccccCCCCCcceeEE
Q 003882 294 DEPLGRLRLSLNVIERRLDHRPVHSKWFN 322 (789)
Q Consensus 294 d~~iG~~~i~l~~l~~~~~~~~~~~~w~~ 322 (789)
.+.||.|.+.+.++.++ ...+|.+
T Consensus 79 Ke~iG~~sL~l~s~gee-----E~~HW~e 102 (103)
T cd08684 79 KRTIGECSLSLRTLSTQ-----ETDHWLE 102 (103)
T ss_pred cceeeEEEeecccCCHH-----Hhhhhhc
Confidence 89999999999987542 2455654
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.45 E-value=8.7e-05 Score=76.49 Aligned_cols=107 Identities=21% Similarity=0.273 Sum_probs=87.7
Q ss_pred CccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE-CC----EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEE-e
Q 003882 379 PIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-GL----KWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVF-D 452 (789)
Q Consensus 379 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-~~----~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~-d 452 (789)
..|.+.|.|++|++|..... .+..++|||+|++ ++ .+.+|+...+|++|-+.+...|.-..+...|.+.|| |
T Consensus 267 ~~g~l~vEii~ar~l~~k~~--~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gd 344 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPG--SKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGD 344 (405)
T ss_pred ccCceeEEEEecccccccCC--cccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecc
Confidence 45899999999999987632 3457999999988 22 247888899999999999898888778899999999 5
Q ss_pred CCCCCCCCCCCCCccEEEEEECcccccCc-eEeeeEeeeec
Q 003882 453 NCHLGGSGTKPDSRIGKVRIRLSTLEADR-IYTHSYPLLVL 492 (789)
Q Consensus 453 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~ 492 (789)
+.++ ..+.|+|-++|-+.+|.... ....||+|...
T Consensus 345 ygRm-----d~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 345 YGRM-----DHKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred cccc-----chHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 5554 37889999999999998765 77999999643
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00012 Score=76.11 Aligned_cols=119 Identities=21% Similarity=0.283 Sum_probs=93.9
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE---C--CEEEeeccccCCCCCccccEEEEEEeC-C-----------C
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY---G--LKWVRTRTLVDNFNPKWNEQYTWEVYD-P-----------C 443 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---~--~~~~~T~~~~~t~~P~wne~~~f~v~~-~-----------~ 443 (789)
-.|++.|+++++++.. .+....|-|+++++ + .++.+|.++++|.+|.|.|.|.+.+.. + .
T Consensus 367 ~elel~ivrg~~~pvp---~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr 443 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVP---GGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKR 443 (523)
T ss_pred hHhHHHHhhcccCCCC---CCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHh
Confidence 3677778888887653 22334688999987 2 356889999999999999999999975 2 2
Q ss_pred ceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCc-cceEEEEEEEEe
Q 003882 444 TVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVK-KMGELQLAVRFT 510 (789)
Q Consensus 444 ~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~f~ 510 (789)
..+.|++|+...+. +.|.++|.+.|.|..|++.-.....|+|.+ |.+ ..|++.++++..
T Consensus 444 ~g~kfeifhkggf~----rSdkl~gt~nikle~Len~cei~e~~~l~D----GRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 444 LGKKFEIFHKGGFN----RSDKLTGTGNIKLEILENMCEICEYLPLKD----GRKAVGGKLEVKVRIR 503 (523)
T ss_pred cCeeEEEeeccccc----cccceeceeeeeehhhhcccchhhceeccc----cccccCCeeEEEEEEe
Confidence 46899999988764 789999999999999999888888999974 333 368888887654
|
|
| >PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0012 Score=61.23 Aligned_cols=83 Identities=17% Similarity=0.230 Sum_probs=55.0
Q ss_pred HhccCCCCCcHHHHHhhcc----CCCccc--cchhhHHHHHHHHHHHHhHHHHHHHhcccccccCchhhHHHHHHHHHHH
Q 003882 554 RLGRAEPPLRKEVVEYMLD----VDSHMW--SMRRSKANFFRIVSLFSGAISMSKWLGEVRYWKNPVTTILVHVLFLILI 627 (789)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~----~~~~~~--s~~~~~~n~~rl~~~~~~~~~~~~~i~~l~~W~~p~~t~~~~~~~~~~~ 627 (789)
++..++....+|+.|+.=. .+.+.. ..++++.=..|++.+++.+.+.+.+++.+++|++|..|.++.+++++++
T Consensus 29 ~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~a 108 (156)
T PF08372_consen 29 KLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAA 108 (156)
T ss_pred cccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHH
Confidence 3444555555665554321 111122 2336777778888889999999999999999999999999777766655
Q ss_pred HhcchhHHHH
Q 003882 628 CYPELILPTI 637 (789)
Q Consensus 628 ~~~~l~~p~~ 637 (789)
.- -+++|+=
T Consensus 109 vv-ly~vP~r 117 (156)
T PF08372_consen 109 VV-LYFVPFR 117 (156)
T ss_pred HH-HHHhhHH
Confidence 43 3344443
|
It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). |
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00063 Score=70.82 Aligned_cols=121 Identities=15% Similarity=0.169 Sum_probs=93.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeeeeeccccCCCCCeeccEEEEEccCC-----------CCceE
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLG-----NYKGKTRHFEKKSNPEWKQVFAFSKEKI-----------QSSVL 117 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~~~~~-----------~~~~l 117 (789)
..|.+.|+++.+++........|-||++.+- .++.+|.++++|..|.|+|.|.+.+... ....+
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 5688888999888765433346788888763 2567999999999999999999998652 24568
Q ss_pred EEEEEeCCC-CCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEee
Q 003882 118 EVFVRDREI-VGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGT 181 (789)
Q Consensus 118 ~v~V~d~~~-~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 181 (789)
.|++|.+.. +.+|.++|.+.+.|..|...-... ..|+|.+.. ....|.|.+.+.+..
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Len~cei~-----e~~~l~DGR--K~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCEIC-----EYLPLKDGR--KAVGGKLEVKVRIRQ 504 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhhcccchh-----hceeccccc--cccCCeeEEEEEEec
Confidence 999999876 457889999999999998765444 567877654 356788888888753
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.019 Score=53.26 Aligned_cols=125 Identities=14% Similarity=0.181 Sum_probs=84.1
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcC--cEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC--------------Cce
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTD--AYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP--------------CTV 445 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~d--pyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~--------------~~~ 445 (789)
.|.++|+.++-...--. +..+..+ -.+-+.+++|+++|+.+.=+.+|.|+|.|-|++... ++.
T Consensus 10 yL~l~vlgGkAFld~l~-~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 10 YLHLRVLGGKAFLDHLQ-EPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred EEEEEEeCchhHhhhhh-ccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 56666666654321100 0002333 344456799999999999999999999999988632 457
Q ss_pred EEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceE--eeeEeeeecCCCCCccceEEEEEEEEeec
Q 003882 446 ITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIY--THSYPLLVLNPSGVKKMGELQLAVRFTCL 512 (789)
Q Consensus 446 l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 512 (789)
|.+-|..-|..+ ...++|.-.++...+...... .....|.+......-..|-|++++...|.
T Consensus 89 ihivli~~d~~~-----~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 89 IHIVLIRTDPSG-----ETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred eEEEEEEecCCC-----ceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 888888877654 448999999999997754432 44555654433222357999999887764
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.029 Score=52.07 Aligned_cols=123 Identities=12% Similarity=0.168 Sum_probs=87.4
Q ss_pred eEEEEEEEEeeCCCCCCCC--CCCC--cEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCC-------------Cce
Q 003882 54 FYLYVRVEKARDLPTNPVS--GSCD--PYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQ-------------SSV 116 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~--g~~d--pyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~-------------~~~ 116 (789)
..|.|+|..++-....-.. +..+ -++-+.+++|+++|+.+..+.+|.|+|.|.|.+.... .+.
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p 88 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP 88 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence 6789999998876543211 2333 3455667899999999999999999999999974331 456
Q ss_pred EEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEc--ccCCCC-CccceEEEEEEEEee
Q 003882 117 LEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL--EDRRDD-RKVKGEVMLAVWIGT 181 (789)
Q Consensus 117 l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L--~~~~~~-~~~~G~l~l~~~~~~ 181 (789)
|++.|.--|..+...++|.-.++-..+....... .++++ .....+ .-..|-|.+++.+.+
T Consensus 89 ihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~-----~~~~vEL~G~~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 89 IHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGS-----TSFTVELCGVGPESKVPVGILDLRLELLP 151 (156)
T ss_pred eEEEEEEecCCCceEeeeeceehHHHHhccCCCc-----cceeEEEeccCCCCccceeEEEEEEEeec
Confidence 7888887777666789999999988888765432 24444 333322 136799999887764
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.034 Score=63.65 Aligned_cols=110 Identities=17% Similarity=0.243 Sum_probs=80.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------eeeeeccccCC-CCCeecc-EEEEE-ccCCCCceEEEEEEe
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-------YKGKTRHFEKK-SNPEWKQ-VFAFS-KEKIQSSVLEVFVRD 123 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-------~~~~T~~~~~t-~nP~wne-~f~f~-~~~~~~~~l~v~V~d 123 (789)
+.+.|+|++|.-|..++ ...||.|.+-+ ..+||+++.++ .||+|+| .|.|. |--+.-..|+|-||+
T Consensus 703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye 778 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE 778 (1189)
T ss_pred eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence 67899999999998765 34899999865 25688887775 4999986 58886 223334789999999
Q ss_pred CCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 124 REIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 124 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
.+ ..|||+-.+++..|..+- +.+.|....+..-....|.+.+-+
T Consensus 779 Eg----gK~ig~RIlpvd~l~~GY--------rhv~LRse~Nqpl~lp~Lfv~i~~ 822 (1189)
T KOG1265|consen 779 EG----GKFIGQRILPVDGLNAGY--------RHVCLRSESNQPLTLPALFVYIVL 822 (1189)
T ss_pred cC----CceeeeeccchhcccCcc--------eeEEecCCCCCccccceeEEEEEe
Confidence 75 469999999999999874 556777665433333455555444
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.056 Score=61.96 Aligned_cols=94 Identities=26% Similarity=0.367 Sum_probs=70.6
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE-C------CEEEeecccc-CCCCCccccE-EEEE-EeCC-CceEEE
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-G------LKWVRTRTLV-DNFNPKWNEQ-YTWE-VYDP-CTVITL 448 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-~------~~~~~T~~~~-~t~~P~wne~-~~f~-v~~~-~~~l~v 448 (789)
.+.+.|+|+.++=|..+ +.-.||.|.+ | .+.+||+++. ++.||+|+|. |.|. |.-| -..|.|
T Consensus 702 A~t~sV~VISgqFLSdr-------kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRi 774 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDR-------KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRI 774 (1189)
T ss_pred EeeEEEEEEeeeecccc-------ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheee
Confidence 37999999999988754 2347999987 2 2458999987 5889999986 7773 2233 579999
Q ss_pred EEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeec
Q 003882 449 GVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVL 492 (789)
Q Consensus 449 ~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 492 (789)
.||++. ..+||+-.+|+..|.+|- +.+.|.+.
T Consensus 775 avyeEg---------gK~ig~RIlpvd~l~~GY---rhv~LRse 806 (1189)
T KOG1265|consen 775 AVYEEG---------GKFIGQRILPVDGLNAGY---RHVCLRSE 806 (1189)
T ss_pred eeeccC---------CceeeeeccchhcccCcc---eeEEecCC
Confidence 999964 469999999999998874 33455443
|
|
| >PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER) | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.0056 Score=58.98 Aligned_cols=61 Identities=11% Similarity=0.069 Sum_probs=18.5
Q ss_pred HHHHhhhHHHHHhccccCCchhhHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhccCCcccC
Q 003882 708 VGDMATQGERFQALLSWRDPRATSLFVIFCLIAAVVLYVTPFKIITLVAGLFWLRHPRFRS 768 (789)
Q Consensus 708 l~~~a~~~e~~~~l~~w~~p~~t~~~~~~l~~~~~~~~~iP~r~i~l~~g~~~~~~P~~r~ 768 (789)
...++..+..++.++.|+||..|..++.+|++.+.+..+++...++.+..+..+.=|.+-.
T Consensus 90 ~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~ 150 (169)
T PF02453_consen 90 AEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYE 150 (169)
T ss_dssp CCCCCHHHHHHHCCCHCT-TTGGG-------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHH
Confidence 3345566888899999999999999999999999988888888777765555555555543
|
Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A. |
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.16 Score=47.94 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=60.9
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----eeeeccccCCCCCeeccEEEEEc--cCC-CCceEEEEEEeC
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKL--GNY----KGKTRHFEKKSNPEWKQVFAFSK--EKI-QSSVLEVFVRDR 124 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~--~~~----~~~T~~~~~t~nP~wne~f~f~~--~~~-~~~~l~v~V~d~ 124 (789)
..++|+|+++.++...+ .+|-||++.+ +++ ...|+.+.. .++.|||.+.|++ .++ ....|.|.||+.
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 36889999999998643 4688888854 443 224554543 6899999999986 343 478999999997
Q ss_pred CCCC----CCceeEEEEEEccc
Q 003882 125 EIVG----RDDYIGKVVFDMNE 142 (789)
Q Consensus 125 ~~~~----~d~~lG~~~i~l~~ 142 (789)
..-. ....+|.+.++|-+
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred ecccCCCCceEEEEEEEEEEEC
Confidence 6421 22468988888777
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.14 Score=49.28 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=60.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEE--ECCe----eeeeccccCCCCCeeccEEEEEc--cCC-CCceEEEEEEeC
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVK--LGNY----KGKTRHFEKKSNPEWKQVFAFSK--EKI-QSSVLEVFVRDR 124 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~--~~~~----~~~T~~~~~t~nP~wne~f~f~~--~~~-~~~~l~v~V~d~ 124 (789)
..++|+|+.+.+|... ....+-||++. .|++ ...|+.+.-+.++.|||.+.|++ .++ ....|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 3689999999999862 23466777764 4554 33666666567899999999985 343 478999999997
Q ss_pred CCCC----------------CCceeEEEEEEccc
Q 003882 125 EIVG----------------RDDYIGKVVFDMNE 142 (789)
Q Consensus 125 ~~~~----------------~d~~lG~~~i~l~~ 142 (789)
.... ++..||.+.++|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 5421 13466776666655
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.46 Score=44.16 Aligned_cols=115 Identities=20% Similarity=0.234 Sum_probs=78.1
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEE---Eeecccc-CCCCCccccEEEEEEeC---C------CceEEE
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKW---VRTRTLV-DNFNPKWNEQYTWEVYD---P------CTVITL 448 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~---~~T~~~~-~t~~P~wne~~~f~v~~---~------~~~l~v 448 (789)
.+.|.|.+..+++. .....||+...|+.. ..|.... .+..-.|||.|.+.+.- . ...+.|
T Consensus 8 ~~~l~i~~l~~~p~-------~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 8 QFDLTIHELENLPS-------SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred EEEEEEEEeECcCC-------CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 67888899988874 133445555556553 4444333 46678999999997752 1 237888
Q ss_pred EEEeCCCCCCCCCCCCCccEEEEEECcccccC--ceEeeeEeeeecCCCCCccceEEEEEEEEeec
Q 003882 449 GVFDNCHLGGSGTKPDSRIGKVRIRLSTLEAD--RIYTHSYPLLVLNPSGVKKMGELQLAVRFTCL 512 (789)
Q Consensus 449 ~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 512 (789)
.|+....-+ ....+|++.|+|++..+. ......++|... .+....|++.|.+.+.
T Consensus 81 ~v~~~~~~~-----~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 81 SVFEVDGSG-----KKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLSEL 137 (143)
T ss_pred EEEEecCCC-----ccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEEC
Confidence 888864321 226999999999999874 566777888633 2345788888887653
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.84 Score=42.37 Aligned_cols=119 Identities=18% Similarity=0.341 Sum_probs=79.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCee---eeecccc-CCCCCeeccEEEEEcc--------CCCCceEEEEE
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYK---GKTRHFE-KKSNPEWKQVFAFSKE--------KIQSSVLEVFV 121 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~---~~T~~~~-~t~nP~wne~f~f~~~--------~~~~~~l~v~V 121 (789)
..+.|+|.+..+++. ....-||+...++.. .+|.... .+..-.|||+|.+.+. ..+...+.|.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 678999999999986 234456666666543 3443332 3446899999999851 13467889999
Q ss_pred EeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeec
Q 003882 122 RDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQ 182 (789)
Q Consensus 122 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 182 (789)
+....-++...+|.+.|+|++........ ...-++|.... .....|.+++.+...
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~~~~~~---~~~~~~l~~~~---~~~a~L~isi~~~~~ 137 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYANEDEEP---ITVRLLLKKCK---KSNATLSISISLSEL 137 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhCcCCCc---EEEEEeCccCC---CCCcEEEEEEEEEEC
Confidence 98854333469999999999998853111 11456666552 345677777776543
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.23 Score=46.86 Aligned_cols=88 Identities=20% Similarity=0.280 Sum_probs=61.6
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEE--CCEEE----eeccccCCCCCccccEEEEEEe--C-C-CceEEEEEE
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY--GLKWV----RTRTLVDNFNPKWNEQYTWEVY--D-P-CTVITLGVF 451 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~~~~----~T~~~~~t~~P~wne~~~f~v~--~-~-~~~l~v~v~ 451 (789)
.++|+|+.++++... ..+|-||.+.+ |++.. .|+.+. ..++.|||-++|++. + | .+.|.|+||
T Consensus 9 ~~~v~i~~~~~~~~~------~~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~~WnEwL~fpI~i~dLPr~ArL~iti~ 81 (158)
T cd08398 9 NLRIKILCATYVNVN------DIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLDYDIYIPDLPRSARLCLSIC 81 (158)
T ss_pred CeEEEEEeeccCCCC------CcCeEEEEEEEEECCEEccCeeEecccC-CCCCccceeEEcccchhcCChhheEEEEEE
Confidence 788999999998752 24688888855 66543 444443 367999999999876 2 3 679999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECccc
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTL 477 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l 477 (789)
+...-. +.+.....||.+.++|-+-
T Consensus 82 ~~~~~~-~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 82 SVKGRK-GAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred EEeccc-CCCCceEEEEEEEEEEECC
Confidence 965321 0111235799999998883
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.34 Score=45.83 Aligned_cols=89 Identities=17% Similarity=0.277 Sum_probs=61.6
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----eeeeccccCCCCCeeccEEEEEc--cCC-CCceEEEEEEeC
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKL--GNY----KGKTRHFEKKSNPEWKQVFAFSK--EKI-QSSVLEVFVRDR 124 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~--~~~----~~~T~~~~~t~nP~wne~f~f~~--~~~-~~~~l~v~V~d~ 124 (789)
..++|++....++...+ ....+-||++.+ +++ ...|+......++.|||.+.|++ .++ ....|.|.||+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 45788888888876522 234566777644 443 22444444447899999999985 343 478999999998
Q ss_pred CCCC--CCceeEEEEEEcccc
Q 003882 125 EIVG--RDDYIGKVVFDMNEV 143 (789)
Q Consensus 125 ~~~~--~d~~lG~~~i~l~~l 143 (789)
+..+ ++..||.+.++|-+-
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred ecCCCCcceEEEEEeEEeEcc
Confidence 7643 457999999888774
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.56 Score=44.39 Aligned_cols=94 Identities=17% Similarity=0.266 Sum_probs=66.9
Q ss_pred CCCCcEEEEEE--CCe----eeeeccccCCCCCeeccEEEEEc--cCC-CCceEEEEEEeCCCCCCCceeEEEEEEcccc
Q 003882 73 GSCDPYVEVKL--GNY----KGKTRHFEKKSNPEWKQVFAFSK--EKI-QSSVLEVFVRDREIVGRDDYIGKVVFDMNEV 143 (789)
Q Consensus 73 g~~dpyv~v~~--~~~----~~~T~~~~~t~nP~wne~f~f~~--~~~-~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l 143 (789)
..+|-||++.+ +++ ..+|+.+.-+..+.|||...|++ .++ ....|.|.|||.+..++...+|.+.++|-+-
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 45788888855 443 23666666567789999999986 343 4789999999988655677999999988774
Q ss_pred CCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeecCCCcC
Q 003882 144 PTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAF 187 (789)
Q Consensus 144 ~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~ 187 (789)
. + ++ ..|...+.+|....+|...
T Consensus 108 ~-g----------~L----------r~G~~~l~lw~~~~~d~~~ 130 (159)
T cd08397 108 D-G----------TL----------RRGRQKLRVWPDVEADGSI 130 (159)
T ss_pred C-C----------cE----------ecCCEEEEEEeCCCCCCcc
Confidence 2 1 11 2578888888776666543
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.13 Score=52.09 Aligned_cols=117 Identities=17% Similarity=0.162 Sum_probs=76.8
Q ss_pred CccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCC
Q 003882 379 PIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLG 457 (789)
Q Consensus 379 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~ 457 (789)
..|.|.+++++++||..... ..+-+-+-||+++++.+ ..||.+......-.|.|.|..++.. ...+.+-||.|+.-.
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~-~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~ 126 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQ-QKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQR 126 (442)
T ss_pred ccceEEEEEecccccccChh-ccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchh
Confidence 34899999999999986543 22345789999999765 5888887777777899999998875 557788888887532
Q ss_pred CCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 458 GSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 458 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
++.+--.-.|.+..+.. +.-.+-+.|.- .+.|++.+++.|
T Consensus 127 -----RHKLC~~g~l~~~~v~r-qspd~~~Al~l------ePrgq~~~r~~~ 166 (442)
T KOG1452|consen 127 -----RHKLCHLGLLEAFVVDR-QSPDRVVALYL------EPRGQPPLRLPL 166 (442)
T ss_pred -----hccccccchhhhhhhhh-cCCcceeeeec------ccCCCCceeccc
Confidence 33322122333333332 22233344432 245888888765
|
|
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.78 Score=38.11 Aligned_cols=63 Identities=27% Similarity=0.357 Sum_probs=48.6
Q ss_pred CCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeEEEEEEcccc
Q 003882 75 CDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEV 143 (789)
Q Consensus 75 ~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l 143 (789)
++..+.+.+++. ..+|.-.. ..+..|||.|.++++. +.+|+|.||=+|- ..+-|...+.|++.
T Consensus 9 ~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR--sRELEI~VywrD~---RslCav~~lrLEd~ 72 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER--SRELEIAVYWRDW---RSLCAVKFLKLEDE 72 (98)
T ss_pred cceEEEEEEcCeEEeeccccc-cccccccceeEEEeec--ccEEEEEEEEecc---hhhhhheeeEhhhh
Confidence 678899999884 56776554 3589999999999876 5799999997764 44667777788874
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.35 Score=45.77 Aligned_cols=69 Identities=20% Similarity=0.272 Sum_probs=51.7
Q ss_pred CcCcEEEEEE--CCEE----EeeccccCCCCCccccEEEEEEe--C-C-CceEEEEEEeCCCCCCCCCCCCCccEEEEEE
Q 003882 404 TTDAYCVAKY--GLKW----VRTRTLVDNFNPKWNEQYTWEVY--D-P-CTVITLGVFDNCHLGGSGTKPDSRIGKVRIR 473 (789)
Q Consensus 404 ~~dpyv~v~~--~~~~----~~T~~~~~t~~P~wne~~~f~v~--~-~-~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~ 473 (789)
.+|-||.+.+ |++. .+|+.+.-+..+.|||-+.|+|. + | .+.|.|+|||.+..+ ....||.+.++
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~-----~~~~vg~~~~~ 103 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTG-----KAVPFGGTTLS 103 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCC-----CceEEEEEEEe
Confidence 5677888855 6554 36655555667899999999886 2 3 679999999976532 56799999999
Q ss_pred Cccc
Q 003882 474 LSTL 477 (789)
Q Consensus 474 l~~l 477 (789)
|-+-
T Consensus 104 lFd~ 107 (159)
T cd08397 104 LFNK 107 (159)
T ss_pred eECC
Confidence 8875
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.36 Score=49.03 Aligned_cols=114 Identities=19% Similarity=0.216 Sum_probs=77.9
Q ss_pred ceeEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECCe-eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCC
Q 003882 52 QMFYLYVRVEKARDLPTNPV--SGSCDPYVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVG 128 (789)
Q Consensus 52 ~~~~L~V~v~~a~~L~~~~~--~g~~dpyv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~ 128 (789)
-.|+|.+++.++++|..... +-+-+-||++....+ +.||.+.....--.|.|+|..++.+. ..+.+-||.++.-.
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~--~vl~~lvySW~pq~ 126 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI--EVLHYLVYSWPPQR 126 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc--eeeeEEEeecCchh
Confidence 44899999999999975432 456789999999886 56888887777889999999998663 67888999888743
Q ss_pred CCc--eeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 129 RDD--YIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 129 ~d~--~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
+.. ..| -+.+..+.... ++ .-+.|.- +.+|++.+++.+.
T Consensus 127 RHKLC~~g--~l~~~~v~rqs-pd-----~~~Al~l-----ePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 127 RHKLCHLG--LLEAFVVDRQS-PD-----RVVALYL-----EPRGQPPLRLPLA 167 (442)
T ss_pred hccccccc--hhhhhhhhhcC-Cc-----ceeeeec-----ccCCCCceecccC
Confidence 333 345 33343443332 22 3334433 2357777777553
|
|
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.63 Score=44.78 Aligned_cols=86 Identities=19% Similarity=0.317 Sum_probs=58.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCeEEEEEE--CCeE----EeeecccCCCCCCccCceeEEEee---CCCCCeEEEEEEEc
Q 003882 218 YLRVNVIEAQDVEPLDKSQLPQAFVEAQV--GNQV----LKTKLCPTRTTNPLWNEDLIFVAA---EPFEEQLVLTVENK 288 (789)
Q Consensus 218 ~L~V~v~~ar~L~~~~~~~~~dpyv~v~l--~~~~----~kT~~~~~~t~nP~wne~f~f~~~---~~~~~~l~i~V~d~ 288 (789)
.++|+|+.+.++...+ ...+-||++.+ |++. ..|+...- +.++.|||.+.|++. -|.+..|.|+||+.
T Consensus 9 ~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~-~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 9 KFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSG-KNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCC-CCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 3889999999998622 34567777644 5543 34544432 577999999999763 34677999999987
Q ss_pred cCCC----------------CCCceEEEEEeccc
Q 003882 289 VTPA----------------KDEPLGRLRLSLNV 306 (789)
Q Consensus 289 d~~~----------------~d~~iG~~~i~l~~ 306 (789)
.... ....||.+.+.|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 5321 23578888777764
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.71 Score=44.41 Aligned_cols=90 Identities=18% Similarity=0.164 Sum_probs=62.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCee----eeecccc----CCCCCeeccEEEEEc--cC-CCCceEEEE
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKL--GNYK----GKTRHFE----KKSNPEWKQVFAFSK--EK-IQSSVLEVF 120 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~--~~~~----~~T~~~~----~t~nP~wne~f~f~~--~~-~~~~~l~v~ 120 (789)
..+.|+|..+.+++........|-||.+.+ +++. ..|+... -...+.|||.+.|++ .+ +....|.|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 468899999999987664445788888754 5542 2444322 123678999999986 33 347899999
Q ss_pred EEeCCCCC---------CCceeEEEEEEcccc
Q 003882 121 VRDREIVG---------RDDYIGKVVFDMNEV 143 (789)
Q Consensus 121 V~d~~~~~---------~d~~lG~~~i~l~~l 143 (789)
||+....+ .+..||.+.++|-+.
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 99976543 346788887777663
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.79 Score=43.35 Aligned_cols=87 Identities=31% Similarity=0.452 Sum_probs=58.9
Q ss_pred EEEEEEEeecCCCCCCCCCCCeEEEEEE--CCeE----EeeecccCCCCCCccCceeEEEee---CCCCCeEEEEEEEcc
Q 003882 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQV--GNQV----LKTKLCPTRTTNPLWNEDLIFVAA---EPFEEQLVLTVENKV 289 (789)
Q Consensus 219 L~V~v~~ar~L~~~~~~~~~dpyv~v~l--~~~~----~kT~~~~~~t~nP~wne~f~f~~~---~~~~~~l~i~V~d~d 289 (789)
++|.+....++...+ ....+-||++.+ |++. ..|..... ..++.|||...|++. -+.+..|.|+||+.+
T Consensus 10 ~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 10 LRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred eEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 778888888776521 223566776644 4432 23333322 368999999999853 346779999999986
Q ss_pred CCC--CCCceEEEEEecccc
Q 003882 290 TPA--KDEPLGRLRLSLNVI 307 (789)
Q Consensus 290 ~~~--~d~~iG~~~i~l~~l 307 (789)
... .+..||.++++|-+-
T Consensus 88 ~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred cCCCCcceEEEEEeEEeEcc
Confidence 543 468999999998754
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=91.42 E-value=2 Score=35.78 Aligned_cols=85 Identities=15% Similarity=0.134 Sum_probs=60.9
Q ss_pred CCcCcEEEEEECCE-EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCc
Q 003882 403 GTTDAYCVAKYGLK-WVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADR 481 (789)
Q Consensus 403 ~~~dpyv~v~~~~~-~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 481 (789)
|.++..|++++++. ..+|.... ..+..|++.|.+++.. +..|+|.||=.|. ..+-|-..+.|.+...
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD~--------RslCav~~lrLEd~~~-- 74 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-SRELEIAVYWRDW--------RSLCAVKFLKLEDERH-- 74 (98)
T ss_pred cccceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-ccEEEEEEEEecc--------hhhhhheeeEhhhhcc--
Confidence 34678999999875 57777754 3578999999998874 7789999997664 2366777888888432
Q ss_pred eEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 482 IYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 482 ~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
....+|. ++|.+..++.|
T Consensus 75 --~~~~~le--------pqg~l~~ev~f 92 (98)
T cd08687 75 --EVQLDME--------PQLCLVAELTF 92 (98)
T ss_pred --cceeccc--------cccEEEEEEEe
Confidence 2233332 56888888877
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=89.76 E-value=2.3 Score=40.87 Aligned_cols=71 Identities=13% Similarity=0.176 Sum_probs=46.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEE--ECCe---eeeeccccCCCCCeeccEEEEEc--cCC-CCceEEEEEEeCCC
Q 003882 55 YLYVRVEKARDLPTNPVSGSCDPYVEVK--LGNY---KGKTRHFEKKSNPEWKQVFAFSK--EKI-QSSVLEVFVRDREI 126 (789)
Q Consensus 55 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~--~~~~---~~~T~~~~~t~nP~wne~f~f~~--~~~-~~~~l~v~V~d~~~ 126 (789)
.++|+|..+.++.. +......-||++. .+++ ..+|+...-+.++.|||.+.|++ .++ ....|.|.||+...
T Consensus 11 ~friki~~~~~~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 11 KFRVKILGIDIPVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CEEEEEEeecccCc-CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 57788888874432 2222233455553 3443 23566666677899999999986 343 47899999999743
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=89.74 E-value=3.5 Score=38.27 Aligned_cols=75 Identities=16% Similarity=0.274 Sum_probs=50.9
Q ss_pred eeccccCC-CCCeeccEEEEEc--cCC-CCceEEEEEEeCCCCCCC----ceeEEEEEEccccCCCCCCCCCCCCeeEEc
Q 003882 89 KTRHFEKK-SNPEWKQVFAFSK--EKI-QSSVLEVFVRDREIVGRD----DYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160 (789)
Q Consensus 89 ~T~~~~~t-~nP~wne~f~f~~--~~~-~~~~l~v~V~d~~~~~~d----~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L 160 (789)
.|+...-+ .++.|||.+.|++ .++ ....|.|.||+.+..... ..||.+.++|-+....
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~~-------------- 88 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRGQ-------------- 88 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTSB--------------
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCCc--------------
Confidence 56666655 7999999999985 443 478999999998775444 6899999888775221
Q ss_pred ccCCCCCccceEEEEEEEEeecCC
Q 003882 161 EDRRDDRKVKGEVMLAVWIGTQAD 184 (789)
Q Consensus 161 ~~~~~~~~~~G~l~l~~~~~~~~d 184 (789)
-..|...+.+|-....+
T Consensus 89 -------L~~G~~~L~lW~~~~~~ 105 (142)
T PF00792_consen 89 -------LRQGPQKLSLWPDEEPD 105 (142)
T ss_dssp -------BEEEEEEEE-EET-TTS
T ss_pred -------ccCCCEEEEEEcCCCCc
Confidence 23688888887654433
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=89.63 E-value=3.7 Score=39.49 Aligned_cols=91 Identities=15% Similarity=0.176 Sum_probs=55.9
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEE--CCEE---EeeccccCCCCCccccEEEEEEe--C-C-CceEEEEEEe
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY--GLKW---VRTRTLVDNFNPKWNEQYTWEVY--D-P-CTVITLGVFD 452 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~~~---~~T~~~~~t~~P~wne~~~f~v~--~-~-~~~l~v~v~d 452 (789)
.++|+|..+..+. .+ ......-||.+.+ |++. .+|..+.-+.++.|||-+.|++. + | .+.|.|+||+
T Consensus 11 ~friki~~~~~~~-~~---~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 11 KFRVKILGIDIPV-LP---RNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYC 86 (178)
T ss_pred CEEEEEEeecccC-cC---CCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEE
Confidence 6777888876432 21 1112334555533 5554 35666555678999999999876 2 3 6799999999
Q ss_pred CCCCC-----------CCCCCCCCccEEEEEECcc
Q 003882 453 NCHLG-----------GSGTKPDSRIGKVRIRLST 476 (789)
Q Consensus 453 ~~~~~-----------~~~~~~d~~lG~~~i~l~~ 476 (789)
..... ...++.+..||.+.+.|-+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 87 GKAPALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred EecCcccccccccccccccccccceEEEEEEEEEc
Confidence 63211 0012245678888888777
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=89.43 E-value=1.8 Score=41.68 Aligned_cols=90 Identities=23% Similarity=0.331 Sum_probs=62.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCeEEEEEE--CCeE----Eeeeccc--C-CCCCCccCceeEEEee---CCCCCeEEEEE
Q 003882 218 YLRVNVIEAQDVEPLDKSQLPQAFVEAQV--GNQV----LKTKLCP--T-RTTNPLWNEDLIFVAA---EPFEEQLVLTV 285 (789)
Q Consensus 218 ~L~V~v~~ar~L~~~~~~~~~dpyv~v~l--~~~~----~kT~~~~--~-~t~nP~wne~f~f~~~---~~~~~~l~i~V 285 (789)
.+.|+|.++.+++........|-||++.+ |++. ..|+... + -...+.|||.+.|.+. -+.+..|.|+|
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl 88 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTL 88 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEE
Confidence 48899999999998765555788888755 5443 2333211 1 1235679999999763 34677999999
Q ss_pred EEccCCC---------CCCceEEEEEecccc
Q 003882 286 ENKVTPA---------KDEPLGRLRLSLNVI 307 (789)
Q Consensus 286 ~d~d~~~---------~d~~iG~~~i~l~~l 307 (789)
|+..... .+..||.+.++|-+-
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 89 YGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9876533 456899988888653
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=87.95 E-value=3.5 Score=38.23 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=39.2
Q ss_pred eeccccCC-CCCccccEEEEEEe--C-C-CceEEEEEEeCCCCCCCCCCCC----CccEEEEEECccc
Q 003882 419 RTRTLVDN-FNPKWNEQYTWEVY--D-P-CTVITLGVFDNCHLGGSGTKPD----SRIGKVRIRLSTL 477 (789)
Q Consensus 419 ~T~~~~~t-~~P~wne~~~f~v~--~-~-~~~l~v~v~d~~~~~~~~~~~d----~~lG~~~i~l~~l 477 (789)
.|+.+.-+ .++.|||.+.|++. + | .+.|.|+||+.+... .+ ..||.+.++|-+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~-----~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKK-----KSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECST-----TT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCC-----ccccceeEEEEEEEEeECC
Confidence 56655555 79999999999875 2 3 679999999866532 22 6899999999886
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.96 E-value=0.76 Score=53.81 Aligned_cols=107 Identities=17% Similarity=0.190 Sum_probs=84.2
Q ss_pred CCcCcEEEEEECCE-EEeeccccCC-CCCccccEEEEEEeCCCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccC
Q 003882 403 GTTDAYCVAKYGLK-WVRTRTLVDN-FNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEAD 480 (789)
Q Consensus 403 ~~~dpyv~v~~~~~-~~~T~~~~~t-~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~ 480 (789)
...++|+.+.+... ..+|...++. -+|.|.+.|......+...+.+.|-+.+..| ....+|.+.++...+..+
T Consensus 136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G-----~s~~w~~v~~s~~~~~~~ 210 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPG-----WSKRWGRVKISFLQYCSG 210 (887)
T ss_pred hhccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccc-----ceeEEEEeccchhhhhcc
Confidence 34799999999765 4788888877 6999999998888888889999999988764 578999999999999998
Q ss_pred ceEeeeEeeeecCCCCCccceEEEEEEEEeecCh
Q 003882 481 RIYTHSYPLLVLNPSGVKKMGELQLAVRFTCLSL 514 (789)
Q Consensus 481 ~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~~ 514 (789)
.....|+++...+..-..+.-.+.+++.|.+...
T Consensus 211 ~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~~~ 244 (887)
T KOG1329|consen 211 HRIGGWFPILDNDGKPHQKGSNESLRLGFTPMEK 244 (887)
T ss_pred ccccceeeeeccCCccccCCcccceEEeeEeech
Confidence 8889999987665433333345666677766543
|
|
| >PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain | Back alignment and domain information |
|---|
Probab=86.61 E-value=1.3 Score=35.38 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=33.2
Q ss_pred eccccccccCCCCCcceeEEccccCcccchhcccccccccceEEEEEEEcCc
Q 003882 303 SLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLEGA 354 (789)
Q Consensus 303 ~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~ 354 (789)
+++.+.. ++++.+..+|..|.++. +.+...+|++++.+++.+.
T Consensus 2 DlgtVY~-qP~H~~~~KW~~L~dP~--------D~~~G~kGYlKv~i~Vlg~ 44 (72)
T PF08151_consen 2 DLGTVYN-QPDHQFYRKWALLTDPD--------DTSAGVKGYLKVDISVLGP 44 (72)
T ss_pred ceeeeec-CCCCeeEeceEEecCCC--------CCccCCceEEEEEEEEEcC
Confidence 4455553 46788899999999884 3456779999999999876
|
They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains []. |
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=86.20 E-value=6.3 Score=38.21 Aligned_cols=40 Identities=15% Similarity=0.279 Sum_probs=32.6
Q ss_pred eeeeccccCCCCCeeccEEEEEcc--CCCCceEEEEEEeCCC
Q 003882 87 KGKTRHFEKKSNPEWKQVFAFSKE--KIQSSVLEVFVRDREI 126 (789)
Q Consensus 87 ~~~T~~~~~t~nP~wne~f~f~~~--~~~~~~l~v~V~d~~~ 126 (789)
.++|.+...+.+|.|+|++.+.+. ......|.|+.+....
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~ 95 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCST 95 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeee
Confidence 568999999999999999999873 3457889998877543
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=86.18 E-value=2.3 Score=41.40 Aligned_cols=58 Identities=12% Similarity=0.167 Sum_probs=35.3
Q ss_pred EEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcc
Q 003882 417 WVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLST 476 (789)
Q Consensus 417 ~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~ 476 (789)
.+.|.+.+++.+|.|+|+|.+.+.. +...|.|++++-..-. ....+..+|.+.+||.+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~--~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKE--SKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SS--SS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeecccc--ccCccceeEEEEEEeee
Confidence 4788889999999999999998875 3678999999966531 11112799999999998
|
|
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=86.08 E-value=4.8 Score=39.08 Aligned_cols=59 Identities=10% Similarity=0.116 Sum_probs=44.0
Q ss_pred EEEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCCCCCCCCccEEEEEECc
Q 003882 416 KWVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLS 475 (789)
Q Consensus 416 ~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~ 475 (789)
..++|.+.+++.+|.|||++.+.+.. +...|.|++++...-. .+......+|-+.+||-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~-~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNE-AKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeecccc-ccCCCCCceEEEEEeee
Confidence 45889999999999999999998873 4678999998865421 01112357999999986
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=84.01 E-value=6.6 Score=33.88 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=48.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----eeeeccccCCCCCeeccEEEEEc--cC-CCCceEEEEEEeCCC
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL--GNY----KGKTRHFEKKSNPEWKQVFAFSK--EK-IQSSVLEVFVRDREI 126 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~--~~~----~~~T~~~~~t~nP~wne~f~f~~--~~-~~~~~l~v~V~d~~~ 126 (789)
+.+.+..+.+.........++-||++.+ +++ ...|+.+.-...+.|||...|++ .+ +....|.|.||+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 6677777777766543333578888854 443 23565555556799999999986 33 347899999998643
|
Outlier of C2 family. |
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=83.24 E-value=11 Score=36.60 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=33.1
Q ss_pred eeeeeccccCCCCCeeccEEEEEc--cCCCCceEEEEEEeCC
Q 003882 86 YKGKTRHFEKKSNPEWKQVFAFSK--EKIQSSVLEVFVRDRE 125 (789)
Q Consensus 86 ~~~~T~~~~~t~nP~wne~f~f~~--~~~~~~~l~v~V~d~~ 125 (789)
..++|.+...+.+|.|+|++.+.+ +......|.|+++...
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S 94 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRS 94 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeec
Confidence 367999999999999999999987 3445789999998754
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function | Back alignment and domain information |
|---|
Probab=83.05 E-value=4.5 Score=35.34 Aligned_cols=96 Identities=7% Similarity=-0.003 Sum_probs=51.7
Q ss_pred EEEEEECCe-eeeeccccCCCCCeeccEEEEEccCC-------CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCC
Q 003882 78 YVEVKLGNY-KGKTRHFEKKSNPEWKQVFAFSKEKI-------QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPP 149 (789)
Q Consensus 78 yv~v~~~~~-~~~T~~~~~t~nP~wne~f~f~~~~~-------~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~ 149 (789)
||.+.+-.. ...|.++. ..||.+|-+-.|.+... ++..+.|+++..-. .....+|.+.+++..+..+...
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~~ 79 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNGE 79 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S-
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCCc
Confidence 566666664 45666665 88999999999987432 47889999998764 3468999999999999855331
Q ss_pred CCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 150 DSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 150 ~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
. ......|.+..++ ..|.|...+++.
T Consensus 80 ~---i~~~~~l~g~~~~--~~g~l~y~~rl~ 105 (107)
T PF11618_consen 80 R---IHGSATLVGVSGE--DFGTLEYWIRLR 105 (107)
T ss_dssp ----EEEEEEE-BSSS---TSEEEEEEEEEE
T ss_pred e---EEEEEEEeccCCC--eEEEEEEEEEec
Confidence 1 1144556555543 678888777653
|
It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A. |
| >KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.63 E-value=3.2 Score=48.85 Aligned_cols=86 Identities=15% Similarity=0.233 Sum_probs=71.5
Q ss_pred CCcEEEEEECCe-eeeeccccCC-CCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCC
Q 003882 75 CDPYVEVKLGNY-KGKTRHFEKK-SNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSP 152 (789)
Q Consensus 75 ~dpyv~v~~~~~-~~~T~~~~~t-~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~ 152 (789)
.++|+.+.+... ..+|..+.+. .+|.|.+.|........ ..+.+.|.+.+..+....+|.+.+++..+..+...+
T Consensus 138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~-g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~-- 214 (887)
T KOG1329|consen 138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKA-GYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIG-- 214 (887)
T ss_pred ccchheeeechhhhhchhhhhcccccchhhhhccccccccc-cEEEEeecCCccccceeEEEEeccchhhhhcccccc--
Confidence 488999998864 4577777777 69999999988887764 789999999998877899999999999999875555
Q ss_pred CCCeeEEcccCCCC
Q 003882 153 LAPQWYRLEDRRDD 166 (789)
Q Consensus 153 ~~~~w~~L~~~~~~ 166 (789)
.|+++.+.++.
T Consensus 215 ---~~~~Il~~d~~ 225 (887)
T KOG1329|consen 215 ---GWFPILDNDGK 225 (887)
T ss_pred ---ceeeeeccCCc
Confidence 89998877654
|
|
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=82.16 E-value=2.9 Score=40.53 Aligned_cols=57 Identities=16% Similarity=0.143 Sum_probs=42.9
Q ss_pred EEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcc
Q 003882 417 WVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLST 476 (789)
Q Consensus 417 ~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~ 476 (789)
.++|.+.+++.+|.|||++.+.+.. +...|.|++++...-. ......+|.+.+||-+
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~---k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKD---KGEKKLFGFSFVPLMR 113 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeecc---CCCCCceEEEEEeecc
Confidence 4689999999999999999998873 4678889888855421 1122678988888854
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function | Back alignment and domain information |
|---|
Probab=81.45 E-value=9.1 Score=33.48 Aligned_cols=93 Identities=17% Similarity=0.217 Sum_probs=50.7
Q ss_pred EEEEEECC-EEEeeccccCCCCCccccEEEEEEeCC--------CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccc
Q 003882 408 YCVAKYGL-KWVRTRTLVDNFNPKWNEQYTWEVYDP--------CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLE 478 (789)
Q Consensus 408 yv~v~~~~-~~~~T~~~~~t~~P~wne~~~f~v~~~--------~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~ 478 (789)
||.+.+-. +..-|+++. ..+|.+|-...|.|.-. ...+.|+++..-. .....||.+.|++.++.
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g------~d~~tla~~~i~l~~ll 74 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG------SDFETLAAGQISLRPLL 74 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S------S-EEEEEEEEE--SHHH
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc------CCeEEEEEEEeechhhh
Confidence 77777744 455666655 88999999988888743 4588898888442 24679999999999988
Q ss_pred cCc--eEeeeEeeeecCCCCCccceEEEEEEEEe
Q 003882 479 ADR--IYTHSYPLLVLNPSGVKKMGELQLAVRFT 510 (789)
Q Consensus 479 ~~~--~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 510 (789)
... .......|.+.+ |. .-|.|+..++..
T Consensus 75 ~~~~~~i~~~~~l~g~~--~~-~~g~l~y~~rl~ 105 (107)
T PF11618_consen 75 ESNGERIHGSATLVGVS--GE-DFGTLEYWIRLR 105 (107)
T ss_dssp H--S--EEEEEEE-BSS--S--TSEEEEEEEEEE
T ss_pred cCCCceEEEEEEEeccC--CC-eEEEEEEEEEec
Confidence 433 355556665442 22 569998887754
|
It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A. |
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=80.53 E-value=5.2 Score=38.95 Aligned_cols=56 Identities=7% Similarity=0.070 Sum_probs=32.5
Q ss_pred eeeeccccCCCCCeeccEEEEEccC--CCCceEEEEEEeCCCCCCC---ceeEEEEEEccc
Q 003882 87 KGKTRHFEKKSNPEWKQVFAFSKEK--IQSSVLEVFVRDREIVGRD---DYIGKVVFDMNE 142 (789)
Q Consensus 87 ~~~T~~~~~t~nP~wne~f~f~~~~--~~~~~l~v~V~d~~~~~~d---~~lG~~~i~l~~ 142 (789)
.+.|.+..++.+|.|+|+|.+.+.. .....|.|++++...-.+. ..+|.+.++|-+
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 4688888899999999999998733 3468899999987652211 577876666655
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 789 | ||||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 7e-09 | ||
| 3hn8_A | 296 | Crystal Structure Of Synaptotagmin Length = 296 | 4e-08 | ||
| 1dqv_A | 296 | Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt | 4e-08 | ||
| 2d8k_A | 141 | Solution Structure Of The First C2 Domain Of Synapt | 1e-06 | ||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 1e-06 | ||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 2e-04 | ||
| 1rh8_A | 142 | Three-Dimensional Structure Of The Calcium-Free Pic | 1e-06 | ||
| 3n5a_A | 138 | Synaptotagmin-7, C2b-Domain, Calcium Bound Length = | 1e-05 | ||
| 1a25_A | 149 | C2 Domain From Protein Kinase C (Beta) Length = 149 | 1e-05 | ||
| 3pfq_A | 674 | Crystal Structure And Allosteric Activation Of Prot | 2e-05 | ||
| 1dsy_A | 139 | C2 Domain From Protein Kinase C (Alpha) Complexed W | 4e-05 | ||
| 3gpe_A | 137 | Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain | 4e-05 | ||
| 2uzp_A | 144 | Crystal Structure Of The C2 Domain Of Human Protein | 1e-04 | ||
| 1w15_A | 153 | Rat Synaptotagmin 4 C2b Domain In The Presence Of C | 1e-04 | ||
| 2nsq_A | 155 | Crystal Structure Of The C2 Domain Of The Human E3 | 1e-04 | ||
| 4dnl_A | 140 | Crystal Structure Of A C2 Domain Of A Protein Kinas | 2e-04 | ||
| 3jzy_A | 510 | Crystal Structure Of Human Intersectin 2 C2 Domain | 2e-04 | ||
| 3b7y_A | 153 | Crystal Structure Of The C2 Domain Of The E3 Ubiqui | 4e-04 |
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296 | Back alignment and structure |
|
| >pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296 | Back alignment and structure |
|
| >pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141 | Back alignment and structure |
|
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
| >pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142 | Back alignment and structure |
|
| >pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound Length = 138 | Back alignment and structure |
|
| >pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149 | Back alignment and structure |
|
| >pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674 | Back alignment and structure |
|
| >pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139 | Back alignment and structure |
|
| >pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137 | Back alignment and structure |
|
| >pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144 | Back alignment and structure |
|
| >pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium Length = 153 | Back alignment and structure |
|
| >pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155 | Back alignment and structure |
|
| >pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140 | Back alignment and structure |
|
| >pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510 | Back alignment and structure |
|
| >pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 2e-44
Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 8/135 (5%)
Query: 43 ATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWK 102
++ + V+ + L V+V KA DL SG DP+ ++LGN + +T K NPEW
Sbjct: 2 SSGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWN 61
Query: 103 QVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLED 162
+VF F + I VLEV V D + D++GKV + + P Y L++
Sbjct: 62 KVFTFPIKDIH-DVLEVTVFDEDGDKPPDFLGKVAIPLLSIR-------DGQPNCYVLKN 113
Query: 163 RRDDRKVKGEVMLAV 177
+ ++ KG + L +
Sbjct: 114 KDLEQAFKGVIYLEM 128
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 2e-19
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 11/131 (8%)
Query: 379 PIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWE 438
+GIL+V +L A LL D G +D +C+ + G ++T T+ N NP+WN+ +T+
Sbjct: 11 DVGILQVKVLKAADLLAA---DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFP 67
Query: 439 VYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVK 498
+ D V+ + VFD P +GKV I L ++ + + Y L +
Sbjct: 68 IKDIHDVLEVTVFDEDGDK-----PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAF 120
Query: 499 KMGELQLAVRF 509
K G + L +
Sbjct: 121 K-GVIYLEMDL 130
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 7e-15
Identities = 31/134 (23%), Positives = 53/134 (39%), Gaps = 21/134 (15%)
Query: 218 YLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPF 277
L+V V++A D+ D S F ++GN L+T + NP WN+ F +
Sbjct: 14 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVY-KNLNPEWNKVFTFPIKDI- 71
Query: 278 EEQLVLTV--ENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDK 335
+ L +TV E+ + LG++ + L I + L+ +K
Sbjct: 72 HDVLEVTVFDEDGDK--PPDFLGKVAIPLLSIR------DGQPNCYVLK---------NK 114
Query: 336 RHELKFSSRIHLRV 349
E F I+L +
Sbjct: 115 DLEQAFKGVIYLEM 128
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 9e-36
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 8/136 (5%)
Query: 50 VEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY------KGKTRHFEKKSNPEWKQ 103
E + VRV L + G+ DPYV V L + +T+ +K NP+W +
Sbjct: 16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNE 75
Query: 104 VFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDS-PLAPQWYRLED 162
F Q L V D + RDD++G+V + +PT P P + + L
Sbjct: 76 EILFRVHPQQHR-LLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHP 134
Query: 163 RRDDRKVKGEVMLAVW 178
R +VKG + L +
Sbjct: 135 RSHKSRVKGYLRLKMT 150
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 2e-14
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 19/144 (13%)
Query: 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG------LKWVRTRTLVDNFNPK 430
++ I+ V +++ GL D G +D Y L V+T+T+ + NPK
Sbjct: 16 EENSRIVRVRVIAGIGLAKK---DILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPK 72
Query: 431 WNEQYTWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEAD---RIYTHSY 487
WNE+ + V+ + VFD L + D +G+V + L L + +++
Sbjct: 73 WNEEILFRVHPQQHRLLFEVFDENRLT----RDD-FLGQVDVPLYPLPTENPRLERPYTF 127
Query: 488 PLLVLNP--SGVKKMGELQLAVRF 509
VL+P + G L+L + +
Sbjct: 128 KDFVLHPRSHKSRVKGYLRLKMTY 151
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 9e-11
Identities = 32/153 (20%), Positives = 62/153 (40%), Gaps = 23/153 (15%)
Query: 208 SKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGN------QVLKTKLCPTRTT 261
+ +RV VI + D +V + + ++TK ++
Sbjct: 11 GLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIK-KSL 69
Query: 262 NPLWNEDLIFVAAEPFEEQLVLTV--ENKVTPAKDEPLGRLRLSLNVI--ERRLDHRPVH 317
NP WNE+++F P + +L+ V EN++T +D+ LG++ + L + E RP
Sbjct: 70 NPKWNEEILFR-VHPQQHRLLFEVFDENRLT--RDDFLGQVDVPLYPLPTENPRLERPYT 126
Query: 318 SKWFNLEKFGFGALELDKRHELKFSSRIHLRVC 350
K F L + H+ + + L++
Sbjct: 127 FKDFVLH---------PRSHKSRVKGYLRLKMT 150
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 7e-34
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFS-KEKIQS 114
+ + V A+ L +GS DPYV V++G K +T+ NP W++ F F
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78
Query: 115 SVLEVFVRDREI---------VGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165
+ V D +I DD++G+ + ++ + + WY L+ R D
Sbjct: 79 IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM-------DVWYNLDKRTD 131
Query: 166 DRKVKGEVMLAV 177
V G + L +
Sbjct: 132 KSAVSGAIRLHI 143
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 88.3 bits (219), Expect = 1e-20
Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 12/137 (8%)
Query: 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYT 436
+ + + ++ AQGL D G++D Y + G RT+T+ N NP W E +
Sbjct: 13 SKWSAKISITVVCAQGLQAK---DKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFH 69
Query: 437 WEVYDPCTVITLGVFD------NCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490
+E ++ I + V D + + D +G+ I + TL + Y L
Sbjct: 70 FECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE--MDVWYNLD 127
Query: 491 VLNPSGVKKMGELQLAV 507
G ++L +
Sbjct: 128 KRTDKSAVS-GAIRLHI 143
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 3e-18
Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 30/162 (18%)
Query: 204 FNIRSKVYVSPKLW--YLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTT 261
F ++ V W + + V+ AQ ++ DK+ +V QVG +TK
Sbjct: 2 FAVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIY-GNL 60
Query: 262 NPLWNEDLIFVAAEPFEEQLVLTV-----------ENKVTPAKDEPLGRLRLSLNVIERR 310
NP+W E+ F +++ + V + + D+ LG+ + + +
Sbjct: 61 NPVWEENFHFECHNS-SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE 119
Query: 311 LDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRIHLRVCLE 352
+D W+NL+K + + S I L + +E
Sbjct: 120 MD------VWYNLDK---------RTDKSAVSGAIRLHISVE 146
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 8e-34
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 7/125 (5%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQ-- 113
L V VE A ++P G DP V V + K KT+ + + NP W ++ F I
Sbjct: 9 LRVIVESASNIPKTK-FGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLD 67
Query: 114 -SSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGE 172
SS L + V+D E +G++ IG + ++ P + L + +
Sbjct: 68 FSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPY--KLISLLN-EKGQDTGAT 124
Query: 173 VMLAV 177
+ L +
Sbjct: 125 IDLVI 129
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 2e-18
Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 14/139 (10%)
Query: 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYT 436
G+L V + SA + K G D + + +T+ + + NP WNE
Sbjct: 3 SGSSGMLRVIVESASNIPKTKF----GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILE 58
Query: 437 WEVY----DPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL-V 491
+++ D + + + V D +G + IG + L L D+ + Y L+ +
Sbjct: 59 FDLRGIPLDFSSSLGIIVKDFETIG-----QNKLIGTATVALKDLTGDQSRSLPYKLISL 113
Query: 492 LNPSGVKKMGELQLAVRFT 510
LN G + L + +
Sbjct: 114 LNEKGQDTGATIDLVIGYD 132
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 2e-13
Identities = 31/135 (22%), Positives = 48/135 (35%), Gaps = 16/135 (11%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEP-- 276
LRV V A ++ P K P V ++ KTK NP+WNE L F
Sbjct: 9 LRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVD-NELNPVWNEILEFDLRGIPL 66
Query: 277 -FEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDK 335
F L + V++ T +++ +G ++L L S + L L
Sbjct: 67 DFSSSLGIIVKDFETIGQNKLIGTATVALK----DLTGDQSRSLPYKLIS-------LLN 115
Query: 336 RHELKFSSRIHLRVC 350
+ I L +
Sbjct: 116 EKGQDTGATIDLVIG 130
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 6e-31
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 55 YLYVRVEKARDLPTNP---VSGSCDPYVEVKLG---NYKGKTRHFEKKSNPEWKQVFAFS 108
V V +A + + + DPYVE+ + + + +TRHF NP W + F F
Sbjct: 4 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 63
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLED 162
+ Q +VLE+ + D D+ +G F ++ + + +
Sbjct: 64 LDPNQENVLEITLMDANY-VMDETLGTATFTVSSMKVGEKKE-----VPFIFNQ 111
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 2e-17
Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG---LKWVRTRTLVDNFNPKWNEQYTWEV 439
V +L A + D T D Y RTR ++ NP WNE + + +
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 440 YDPCT-VITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVK 498
V+ + + D ++ D +G +S+++ +
Sbjct: 65 DPNQENVLEITLMDANYVM------DETLGTATFTVSSMKVGEKKEVPFIF--------N 110
Query: 499 KMGELQLAVRFTCLS 513
++ E+ L + S
Sbjct: 111 QVTEMVLEMSLEVAS 125
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 2e-12
Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 12/122 (9%)
Query: 218 YLRVNVIEAQDV---EPLDKSQLPQAFVEAQVG---NQVLKTKLCPTRTTNPLWNEDLIF 271
V V+ A V D P +VE + + +T+ NP+WNE F
Sbjct: 4 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFN-NDINPVWNETFEF 62
Query: 272 VAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGAL 331
+ E L +T+ + DE LG +++ + F + L
Sbjct: 63 ILDPNQENVLEITLMDA-NYVMDETLGTATFTVS----SMKVGEKKEVPFIFNQVTEMVL 117
Query: 332 EL 333
E+
Sbjct: 118 EM 119
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 1e-30
Identities = 59/287 (20%), Positives = 110/287 (38%), Gaps = 56/287 (19%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKG---KTRHFEKKSNPEWKQVFAF--SKE 110
L V + +A +LP + G+ DPYV+V L K +T+ K NP + + F F
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80
Query: 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVK 170
++ L + V D + + D IG+ MN V +++++
Sbjct: 81 ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNT----VDFGHVTEEWRDLQSAEKEEQEKL 136
Query: 171 GEVMLAVWIGTQADEAFPEAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVE 230
G++ ++ A + L V ++EA++++
Sbjct: 137 GDICFSLRYVPTAGK---------------------------------LTVVILEAKNLK 163
Query: 231 PLDKSQLPQAFVEAQVGNQVLKTKLCPT----RTTNPLWNEDLIF-VAAEPFEE-QLVLT 284
+D L +V+ + + K T T NP +NE F V E ++ Q+V+T
Sbjct: 164 KMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVT 223
Query: 285 VENKVTPAKDEPLGRLRLSLNVIERRLDH--------RPVHSKWFNL 323
V + K++ +G++ + N L H R ++W L
Sbjct: 224 VLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTL 270
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 1e-18
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 21/137 (15%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAF--S 108
L V + +A++L V G DPYV++ L K KT + NP + + F+F
Sbjct: 152 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 211
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRV--------PPDSPLAPQWYRL 160
E+IQ + V V D + +G++D IGKV N + P P+A QW+ L
Sbjct: 212 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 270
Query: 161 EDRRDDRKVKGEVMLAV 177
+ + + MLAV
Sbjct: 271 QVEE-----EVDAMLAV 282
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 8e-14
Identities = 63/267 (23%), Positives = 104/267 (38%), Gaps = 59/267 (22%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQV---GNQVLKTKLCPTRTTNPLWNEDLIF-VAA 274
L V +I+A ++ LD +V+ + + +TK+ +T NP++NE F V
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVFNEQFTFKVPY 79
Query: 275 EPFEEQ-LVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALEL 333
+ LV+ V + +K + +G ++ +N +D V +W +L+ E
Sbjct: 80 SELAGKTLVMAVYDFDRFSKHDIIGEFKVPMN----TVDFGHVTEEWRDLQS--AEKEEQ 133
Query: 334 DKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGL 393
+K ++ FS R PTA G L V IL A+ L
Sbjct: 134 EKLGDICFSLRYV-----------------------PTA--------GKLTVVILEAKNL 162
Query: 394 LPMKTRDGRGTTDAYCVAKYG-----LKWVRTRTLVDNFNPKWNEQYTWEVYD---PCTV 445
M D G +D Y LK +T + NP +NE +++EV
Sbjct: 163 KKM---DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQ 219
Query: 446 ITLGVFDNCHLGGSGTKPDSRIGKVRI 472
+ + V D K D+ IGKV +
Sbjct: 220 VVVTVLDY----DKIGKNDA-IGKVFV 241
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 3e-08
Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 14/135 (10%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAK---YGLKWVRTRTLVDNFNPKWNEQYTW 437
L VGI+ A L + D GT+D Y K T+ NP +NEQ+T+
Sbjct: 19 NQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 75
Query: 438 EVYD---PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNP 494
+V + + V+D IG+ ++ ++T++ + L
Sbjct: 76 KVPYSELAGKTLVMAVYDFDRFSK-----HDIIGEFKVPMNTVDFGHVTEEWRDLQSAEK 130
Query: 495 SGVKKMGELQLAVRF 509
+K+G++ ++R+
Sbjct: 131 EEQEKLGDICFSLRY 145
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 1e-30
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 9/116 (7%)
Query: 53 MFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKI 112
M L V V+KA+ + YV +K+ N K T + S P W+Q F F ++
Sbjct: 4 MSLLCVGVKKAKFDGA---QEKFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRL 59
Query: 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRK 168
L V V ++ ++ D +G V + + + +W L+ +
Sbjct: 60 DLG-LTVEVWNKGLIW-DTMVGTVWIPLRTIRQS---NEEGPGEWLTLDSQAIMAD 110
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 59.2 bits (143), Expect = 1e-10
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 218 YLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPF 277
L V V +A+ +K +V +V N T R + P W +D +F
Sbjct: 6 LLCVGVKKAKFDGAQEKFN---TYVTLKVQNVKSTTIA--VRGSQPSWEQDFMFEINRL- 59
Query: 278 EEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEK 325
+ L + V NK D +G + + L I + + +W L+
Sbjct: 60 DLGLTVEVWNK-GLIWDTMVGTVWIPLRTIRQS--NEEGPGEWLTLDS 104
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 3e-04
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 13/97 (13%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVY 440
+L VG+ A+ + Y K T V P W + + +E+
Sbjct: 5 SLLCVGVKKAKFDGAQ------EKFNTYVTLKVQNVKSTTIA-VRGSQPSWEQDFMFEIN 57
Query: 441 DPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTL 477
+T+ V++ + D+ +G V I L T+
Sbjct: 58 RLDLGLTVEVWNKGLIW------DTMVGTVWIPLRTI 88
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 2e-30
Identities = 69/297 (23%), Positives = 110/297 (37%), Gaps = 58/297 (19%)
Query: 47 YDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKL---GNYKGKTRHFEKKSNPEWKQ 103
Y L VR+ +A DLP +G DPYV++ L K +T+ K NP + +
Sbjct: 15 YLYGSDQ--LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 72
Query: 104 VFAF--SKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161
F F ++ L V D + R D IG+VV D PPD PL W +
Sbjct: 73 TFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDIL 129
Query: 162 DRRDDRKVKGEVMLAVWIGTQADEAFPEAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRV 221
+ ++ GE+ + + P L V
Sbjct: 130 EGGSEKADLGELNFS---------------------------------LCYLPTAGLLTV 156
Query: 222 NVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTR----TTNPLWNEDLIF-VAAEP 276
+I+A +++ +D + +V+A + ++ + K T T NP +NE L+F VA E
Sbjct: 157 TIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPES 216
Query: 277 FEE-QLVLTVENKVTPAKDEPLGRLRLSLNVI-ERRLDH--------RPVHSKWFNL 323
E L + V + +E +G R+ +H R W L
Sbjct: 217 VENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQL 273
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 3e-18
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 17/126 (13%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAF--S 108
L V + KA +L ++G DPYV+ L + K KT + NP + + F +
Sbjct: 154 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 213
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVP---------PDSPLAPQWYR 159
E +++ L + V D + +G ++ IG P P+ W++
Sbjct: 214 PESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVE-HWHQ 272
Query: 160 LEDRRD 165
L + +
Sbjct: 273 LVEEKT 278
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 6e-14
Identities = 51/272 (18%), Positives = 96/272 (35%), Gaps = 58/272 (21%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQV---GNQVLKTKLCPTRTTNPLWNEDLIF-VAA 274
L V +++A D+ D + +V+ + + +TK+ +T NP++NE F V
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHR-KTLNPIFNETFQFSVPL 80
Query: 275 EPFEEQ-LVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALEL 333
++ L +V + ++ + +G++ L + + P W ++ +
Sbjct: 81 AELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLEL--AEQPPDRPLWRDILEG------- 131
Query: 334 DKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGL 393
E ++ +C PTA G+L V I+ A L
Sbjct: 132 --GSEKADLGELNFSLCYL-----------------PTA--------GLLTVTIIKASNL 164
Query: 394 LPMKTRDGRGTTDAYCVAKYG-----LKWVRTRTLVDNFNPKWNEQYTWEVYD---PCTV 445
M D G +D Y A LK +T + NP +NE ++V
Sbjct: 165 KAM---DLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVG 221
Query: 446 ITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTL 477
+++ V D + IG R+
Sbjct: 222 LSIAVVDY----DCIGHNEV-IGVCRVGPEAA 248
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 28/137 (20%), Positives = 43/137 (31%), Gaps = 17/137 (12%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAK---YGLKWVRTRTLVDNFNPKWNEQYTW 437
L V IL A L D G +D Y K +T+ NP +NE + +
Sbjct: 20 DQLVVRILQALDLPAK---DSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF 76
Query: 438 EVYD---PCTVITLGVFDNCHLGGSGTKPDSRIGKVRI--RLSTLEADRIYTHSYPLLVL 492
V + V+D IG+V + L E +L
Sbjct: 77 SVPLAELAQRKLHFSVYDFDRFSR-----HDLIGQVVLDNLLELAEQPPDRPLWRDILEG 131
Query: 493 NPSGVKKMGELQLAVRF 509
+GEL ++ +
Sbjct: 132 GSEKA-DLGELNFSLCY 147
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 7e-28
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 8/142 (5%)
Query: 51 EQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY------KGKTRHFEKKSNPEWKQV 104
+ + V+V L + G+ DPYV V L + +T+ +K NP+W +
Sbjct: 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEE 64
Query: 105 FAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPD-SPLAPQWYRLEDR 163
F Q + V D + RDD++G+V + +PT P P + + L R
Sbjct: 65 ILFRVLP-QRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPR 123
Query: 164 RDDRKVKGEVMLAVWIGTQADE 185
+VKG + L + +
Sbjct: 124 SHKSRVKGYLRLKMTYLPKNGS 145
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 2e-17
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 19/147 (12%)
Query: 374 QLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG------LKWVRTRTLVDNF 427
+L ++ V +++ GL D G +D Y L V+T+T+ +
Sbjct: 1 ELHNDDTRVVRVKVIAGIGLAKK---DILGASDPYVRVTLYDPMSGILTSVQTKTIKKSL 57
Query: 428 NPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRI---YT 484
NPKWNE+ + V I VFD L D +G+V + L L +
Sbjct: 58 NPKWNEEILFRVLPQRHRILFEVFDENRLT-----RDDFLGQVDVPLYPLPTENPRMERP 112
Query: 485 HSYPLLVLNPSGVKK--MGELQLAVRF 509
+++ VL+P K G L+L + +
Sbjct: 113 YTFKDFVLHPRSHKSRVKGYLRLKMTY 139
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 3e-09
Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 19/142 (13%)
Query: 218 YLRVNVIEAQDVEPLDKSQLPQAFVEAQVGN------QVLKTKLCPTRTTNPLWNEDLIF 271
+RV VI + D +V + + ++TK ++ NP WNE+++F
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIK-KSLNPKWNEEILF 67
Query: 272 VAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVI--ERRLDHRPVHSKWFNLEKFGFG 329
P +++ V ++ +D+ LG++ + L + E RP K F L
Sbjct: 68 R-VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHP---- 122
Query: 330 ALELDKRHELKFSSRIHLRVCL 351
+ H+ + + L++
Sbjct: 123 -----RSHKSRVKGYLRLKMTY 139
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-26
Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 9/118 (7%)
Query: 51 EQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKE 110
+ L V V+KA+ + YV +K+ N + T + S P W+Q F F
Sbjct: 11 GILSLLCVGVKKAKFDGA---QEKFNTYVTLKVQNVESTTIAV-RGSQPSWEQDFMFEIN 66
Query: 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRK 168
++ L V V ++ ++ D +G V + + + +W L+ +
Sbjct: 67 RLDLG-LTVEVWNKGLI-WDTMVGTVWIPLRTIRQS---NEEGPGEWLTLDSQAIMAD 119
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 3e-09
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 9/108 (8%)
Query: 218 YLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPF 277
L V V +A+ +K +V +V N T R + P W +D +F
Sbjct: 15 LLCVGVKKAKFDGAQEKFN---TYVTLKVQNVESTTIA--VRGSQPSWEQDFMFEINRL- 68
Query: 278 EEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEK 325
+ L + V NK D +G + + L I + + P +W L+
Sbjct: 69 DLGLTVEVWNK-GLIWDTMVGTVWIPLRTIRQSNEEGP--GEWLTLDS 113
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 8e-24
Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 6/142 (4%)
Query: 36 GWISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEK 95
G S + + L + V A+ PYVEV + KT
Sbjct: 18 GMSDSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNN 77
Query: 96 KSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAP 155
++P+WKQ S L V + + D +G D+ E + L
Sbjct: 78 TNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLLGTAALDIYETLK--SNNMKLEE 133
Query: 156 QWYRLEDRRDDR--KVKGEVML 175
L+ D + G++ +
Sbjct: 134 VVVTLQLGGDKEPTETIGDLSI 155
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 1e-14
Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 13/135 (9%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFE 278
L++ VI A+ E P +VE V Q KT+ C T +P W + L +
Sbjct: 38 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCN-NTNSPKWKQPLTVIVTP--V 94
Query: 279 EQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHE 338
+L V + T D LG L + + + + L+ G DK
Sbjct: 95 SKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNM-KLEEVVVTLQLGG------DKEPT 147
Query: 339 LKFSSRIHLRVCLEG 353
+ L +CL+G
Sbjct: 148 ---ETIGDLSICLDG 159
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 1e-14
Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 13/129 (10%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVY 440
L++ ++SA+ Y + +T + +PKW + T V
Sbjct: 36 SQLQITVISAKLKENK---KNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIV- 91
Query: 441 DPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSG---- 496
P + + V+ + L D +G + + ++ L G
Sbjct: 92 TPVSKLHFRVWSHQTLK-----SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEP 146
Query: 497 VKKMGELQL 505
+ +G+L +
Sbjct: 147 TETIGDLSI 155
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 1e-23
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKS-NPEWKQVFAFSKEKIQS 114
L V + A+ L + DPYV++ K+ E PEW + F F+ + +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-GT 70
Query: 115 SVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVM 174
+ L+ + D+++ DD +G+ + V + + P Y + D + KGE+
Sbjct: 71 TELKAKIFDKDVGTEDDAVGEATIPLEP----VFVEGSIPPTAYNV---VKDEEYKGEIW 123
Query: 175 LAV 177
+A+
Sbjct: 124 VAL 126
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 5e-18
Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 12/135 (8%)
Query: 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVD-NFNPKWNEQY 435
P G LEV ++SA+GL + D D Y + ++ P+WNE +
Sbjct: 6 SGPHGTLEVVLVSAKGL---EDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETF 62
Query: 436 TWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPS 495
+ V + T + +FD D +G+ I L + + + +V +
Sbjct: 63 IFTVSEGTTELKAKIFDKDVGT-----EDDAVGEATIPLEPVFVEGSIPPTAYNVVKDE- 116
Query: 496 GVKKMGELQLAVRFT 510
+ GE+ +A+ F
Sbjct: 117 --EYKGEIWVALSFK 129
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 4e-13
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 8/109 (7%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFE 278
L V ++ A+ +E D +V+ Q K+ + T P WNE IF +E
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-T 70
Query: 279 EQLVLTV--ENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEK 325
+L + ++ T +D+ +G + L + + +N+ K
Sbjct: 71 TELKAKIFDKDVGT--EDDAVGEATIPLEPV---FVEGSIPPTAYNVVK 114
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 3e-23
Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 9/147 (6%)
Query: 47 YDLVEQMFY--LYVRVEKARDLPTNP---VSGSCDPYVEVKLG---NYKGKTRHFEKKSN 98
+ +VE + V V +A + + + DPYVE+ + + + +TRHF N
Sbjct: 9 HIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDIN 68
Query: 99 PEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWY 158
P W + F F + Q +VLE+ + D V D+ +G F ++ + + P
Sbjct: 69 PVWNETFEFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFNQV 127
Query: 159 RLEDRRDDRKVKGEVMLAVWIGTQADE 185
+V L + E
Sbjct: 128 TEMVLEMSLEVCSCPDLRFSMALCDQE 154
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 60.7 bits (146), Expect = 1e-09
Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 10/116 (8%)
Query: 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG---LKWVRTRTLVDNFNPKWNE 433
Q V +L A + D T D Y RTR ++ NP WNE
Sbjct: 14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNE 73
Query: 434 QYTWEVYDP-CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYP 488
+ + + V+ + + D ++ D +G +S+++ +
Sbjct: 74 TFEFILDPNQENVLEITLMDANYVM------DETLGTATFTVSSMKVGEKKEVPFI 123
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 53.4 bits (127), Expect = 2e-07
Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 20/204 (9%)
Query: 217 WYLRVNVIEAQDV---EPLDKSQLPQAFVEAQVG---NQVLKTKLCPTRTTNPLWNEDLI 270
V V+ A V D P +VE + + +T+ NP+WNE
Sbjct: 18 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHF-NNDINPVWNETFE 76
Query: 271 FVAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGA 330
F+ E L +T+ + DE LG +++ ++
Sbjct: 77 FILDPNQENVLEITLMDA-NYVMDETLGTATFTVSSMKVGEKKEVPFIFN---------- 125
Query: 331 LELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSA 390
L+ S + L + + D+ + ++ R+ K+ +G L +
Sbjct: 126 --QVTEMVLEMSLEVCSCPDLRFSMALCDQEKTFRQQRKEHIRESMKKLLGPKNSEGLHS 183
Query: 391 QGLLPMKTRDGRGTTDAYCVAKYG 414
+P+ G G V G
Sbjct: 184 ARDVPVVAILGSGGGFRAMVGFSG 207
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 89.5 bits (222), Expect = 2e-21
Identities = 25/139 (17%), Positives = 50/139 (35%), Gaps = 26/139 (18%)
Query: 53 MF--YLYVRVEKARDLP-----------TNPVSGSCDPYVEVKLGNYK-GKTRHFEKKSN 98
+F L +++ +A L P + DPY+ + + + + G+T +K ++
Sbjct: 3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNS 62
Query: 99 PEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWY 158
P W F +E+ V +G DD++ E+ W
Sbjct: 63 PAWHDEFVTDVC--NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFED---WI 117
Query: 159 RLEDRRDDRKVKGEVMLAV 177
LE +G+V + +
Sbjct: 118 DLE-------PEGKVYVII 129
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 2e-15
Identities = 18/147 (12%), Positives = 47/147 (31%), Gaps = 31/147 (21%)
Query: 218 YLRVNVIEAQDVEPLDKSQLPQA-----------FVEAQVGNQVLKTKLCPTRTTNPLWN 266
L++ + EA ++P S ++ V + + +T +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 267 EDLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKF 326
++ + ++ L V + D+ + + + + W +LE
Sbjct: 67 DEFVTDVCNG--RKIELAVFHDAPIGYDDFVANCTIQFEELLQN--GSRHFEDWIDLEPE 122
Query: 327 GFGALELDKRHELKFSSRIHLRVCLEG 353
G ++++ + L G
Sbjct: 123 G----------------KVYVIIDLSG 133
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 3e-15
Identities = 25/143 (17%), Positives = 48/143 (33%), Gaps = 25/143 (17%)
Query: 379 PIGILEVGILSAQGLLPM--------KTRDGRGTTDAYCVAKYG-LKWVRTRTLVDNFNP 429
G+L++ I A L P R D Y + +T T +P
Sbjct: 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSP 63
Query: 430 KWNEQYTWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTL--EADRIYTHSY 487
W++++ +V + I L VF + +G D + I+ L R +
Sbjct: 64 AWHDEFVTDVCNG-RKIELAVFHDAPIG-----YDDFVANCTIQFEELLQNGSRHFEDWI 117
Query: 488 PLLVLNPSGVKKMGELQLAVRFT 510
L + G++ + + +
Sbjct: 118 DL--------EPEGKVYVIIDLS 132
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 3e-20
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 21/137 (15%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAF--S 108
L V + +A++L V G DPYV++ L K KT + NP + + F+F
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRV--------PPDSPLAPQWYRL 160
E+IQ + V V D + +G++D IGKV N + P P+A QW+ L
Sbjct: 87 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 145
Query: 161 EDRRDDRKVKGEVMLAV 177
+ + + MLAV
Sbjct: 146 QVEE-----EVDAMLAV 157
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 3e-08
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPT----RTTNPLWNEDLIF-VA 273
L V ++EA++++ +D L +V+ + + K T T NP +NE F V
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86
Query: 274 AEPFEE-QLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDH---------RPVHSKWFNL 323
E ++ Q+V+TV + K++ +G++ + N L H RP+ ++W L
Sbjct: 87 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPI-AQWHTL 145
Query: 324 E 324
+
Sbjct: 146 Q 146
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 7e-20
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 22/127 (17%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL--------------GNYKGKTRHFEKKSNPEW 101
L + + +AR+L +G DP+V+V L YK +T++ +K NPEW
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 102 KQVFAF---SKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWY 158
Q + S E++ LEV V D + +D++G+V+ D++ P+WY
Sbjct: 80 NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN-----TPRWY 134
Query: 159 RLEDRRD 165
L+++ +
Sbjct: 135 PLKEQTE 141
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 8e-08
Identities = 23/131 (17%), Positives = 56/131 (42%), Gaps = 26/131 (19%)
Query: 215 KLWY----LRVNVIEAQDVEPLDKSQLPQAFV--------------EAQVGNQVLKTKLC 256
++ Y L +++++A+++ P D + FV + +TK
Sbjct: 12 QINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYV 71
Query: 257 PTRTTNPLWNEDLIFVA---AEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDH 313
++ NP WN+ +I+ + + ++ L +TV + + ++ LG + + L+ H
Sbjct: 72 Q-KSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLS----STSH 126
Query: 314 RPVHSKWFNLE 324
+W+ L+
Sbjct: 127 LDNTPRWYPLK 137
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-06
Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 26/128 (20%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCV--------------AKYGLKWVRTRTLVDN 426
G L + IL A+ L+P D G +D + RT+ + +
Sbjct: 18 GNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS 74
Query: 427 FNPKWNEQYTWEVYDP----CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRI 482
NP+WN+ ++ + + V+D + +G+V I LS+
Sbjct: 75 LNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFS-----SNDFLGEVLIDLSSTSHLDN 129
Query: 483 YTHSYPLL 490
YPL
Sbjct: 130 TPRWYPLK 137
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 2e-19
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL---GNYKGKTRHFEKKSNPEWKQVFAF--SKE 110
L V + +A +LP + G+ DPYV+V L K +T+ K NP + + F F
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95
Query: 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161
++ L + V D + + D IG+ MN V +W L+
Sbjct: 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT----VDFGHVT-EEWRDLQ 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 4e-08
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 16/121 (13%)
Query: 215 KLWY------LRVNVIEAQDVEPLDKSQLPQAFVEAQV---GNQVLKTKLCPTRTTNPLW 265
L Y L V +I+A ++ LD +V+ + + +TK+ +T NP++
Sbjct: 26 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVF 84
Query: 266 NEDLIFV--AAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNL 323
NE F +E + LV+ V + +K + +G ++ +N ++ H W +L
Sbjct: 85 NEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD--FGHVTEE--WRDL 140
Query: 324 E 324
+
Sbjct: 141 Q 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 14/116 (12%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAK---YGLKWVRTRTLVDNFNPKWNEQYTW 437
L VGI+ A L + D GT+D Y K T+ NP +NEQ+T+
Sbjct: 34 NQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 90
Query: 438 EVYD---PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490
+V + + V+D IG+ ++ ++T++ + L
Sbjct: 91 KVPYSELGGKTLVMAVYDF-----DRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 2e-19
Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 21/134 (15%)
Query: 55 YLYVRVEKARDLP----------TNPVSGSCDPYVEVKLGNYK-GKTRHFEKKSNPEWKQ 103
YL VR+ +A L DPY+ V + + G+T +K + P + +
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89
Query: 104 VFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR 163
F + LE+ V +G D ++ E+ S W LE
Sbjct: 90 EFCANVT--DGGHLELAVFHETPLGYDHFVANCTLQFQELLRT-TGASDTFEGWVDLEP- 145
Query: 164 RDDRKVKGEVMLAV 177
+G+V + +
Sbjct: 146 ------EGKVFVVI 153
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 6e-17
Identities = 25/146 (17%), Positives = 44/146 (30%), Gaps = 28/146 (19%)
Query: 218 YLRVNVIEAQDVEPLDKSQLPQA----------FVEAQVGNQVLKTKLCPTRTTNPLWNE 267
YLRV + EA ++P S ++ V + +T P +NE
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89
Query: 268 DLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFG 327
+ + L L V ++ D + L + R W +LE G
Sbjct: 90 EFCANVTDGGH--LELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEPEG 147
Query: 328 FGALELDKRHELKFSSRIHLRVCLEG 353
++ + + L G
Sbjct: 148 ----------------KVFVVITLTG 157
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 3e-16
Identities = 32/151 (21%), Positives = 50/151 (33%), Gaps = 20/151 (13%)
Query: 369 RPTARQLWKQPIGILEVGILSAQGLLPM-------KTRDGRGTTDAYCVAKYGLKWV-RT 420
R + + G L V I A GL P + G D Y V +T
Sbjct: 17 RGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQT 76
Query: 421 RTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEAD 480
T P +NE++ V D + L VF LG D + ++ L
Sbjct: 77 STKQKTNKPTYNEEFCANVTDG-GHLELAVFHETPLG-----YDHFVANCTLQFQELLRT 130
Query: 481 RIYTHSYPLLV-LNPSGVKKMGELQLAVRFT 510
+ ++ V L P G++ + + T
Sbjct: 131 TGASDTFEGWVDLEPE-----GKVFVVITLT 156
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 3e-19
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKG---KTRHFEKKSNPEWKQVFAF--SKE 110
L V + +A +LP + G+ DPYV+V L K +T+ K NP + + F F
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103
Query: 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161
++ L + V D + + D IG+ MN V +W L+
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT----VDFGHVT-EEWRDLQ 149
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 1e-07
Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 14/116 (12%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAK---YGLKWVRTRTLVDNFNPKWNEQYTW 437
L VGI+ A L + D GT+D Y K T+ NP +NEQ+T+
Sbjct: 42 NQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 98
Query: 438 EVYD---PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490
+V + + V+D IG+ ++ ++T++ + L
Sbjct: 99 KVPYSELGGKTLVMAVYDF-----DRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-07
Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 32/129 (24%)
Query: 215 KLWY------LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTR--------- 259
L Y L V +I+A ++ LD +V K L P +
Sbjct: 34 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYV---------KVFLLPDKKKKFETKVH 84
Query: 260 --TTNPLWNEDLIFV--AAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRP 315
T NP++NE F +E + LV+ V + +K + +G ++ +N ++ H
Sbjct: 85 RKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVD--FGHVT 142
Query: 316 VHSKWFNLE 324
W +L+
Sbjct: 143 EE--WRDLQ 149
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 4e-19
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 11/114 (9%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL---GNYKGKTRHFEKKSNPEWKQVFAF---SK 109
L V++ KA++LP SG+ DP+V++ L +K +T+ K NP W + F F
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPY 87
Query: 110 EKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR 163
EK+ +L + V D + R+D IG+V +N+V + + W L+
Sbjct: 88 EKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDL-----TQMQTFWKDLKPS 136
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 3e-08
Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 33/131 (25%)
Query: 215 KLWY------LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTR--------- 259
+ Y L V +++AQ++ D S FV K L P +
Sbjct: 18 SVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFV---------KIYLLPDKKHKLETKVK 68
Query: 260 --TTNPLWNEDLIF---VAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHR 314
NP WNE +F + + L L V + ++++P+G + + LN ++D
Sbjct: 69 RKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLN----KVDLT 124
Query: 315 PVHSKWFNLEK 325
+ + W +L+
Sbjct: 125 QMQTFWKDLKP 135
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-07
Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 15/116 (12%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY---GLKWVRTRTLVDNFNPKWNEQYTW 437
L V I+ AQ L D GT+D + + T+ N NP WNE + +
Sbjct: 26 STLTVKIMKAQELPAK---DFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF 82
Query: 438 EVYDPCTVIT----LGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489
E + V+ L V D + IG+V I L+ ++ ++ T L
Sbjct: 83 EGFPYEKVVQRILYLQVLDYDRFSR-----NDPIGEVSIPLNKVDLTQMQTFWKDL 133
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 5e-19
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 16/121 (13%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAF--S 108
+ V + KAR+L + G+ DPYV+V L K KT ++ NP + + FAF
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIP 77
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVP--------PDSPLAPQWYRL 160
EK++ + + + V D++ + R+D IGK+ P V P P+A QW++L
Sbjct: 78 TEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVA-QWHQL 136
Query: 161 E 161
+
Sbjct: 137 K 137
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-08
Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 18/122 (14%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQV--GNQVL---KTKLCPTRTTNPLWNEDLIF-V 272
+ VN+I+A++++ +D +V+ + ++ + KT R NP++NE F +
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKK-RNLNPIFNESFAFDI 76
Query: 273 AAEPFEE-QLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDH---------RPVHSKWFN 322
E E +++TV +K ++++ +G++ LS + H +PV ++W
Sbjct: 77 PTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPV-AQWHQ 135
Query: 323 LE 324
L+
Sbjct: 136 LK 137
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 5e-19
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL-----GNYKGKTRHFEKKSNPEWKQVFAFS-K 109
L V V A++L +G DPYV++KL K KT+ + NPEW + F F K
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 92
Query: 110 EKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRK 168
E + L V + D ++ R+D++G + F ++E+ W++L + +
Sbjct: 93 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL------QKAGVDGWFKLLSQEEGEY 145
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-09
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 16/117 (13%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCV-----AKYGLKWVRTRTLVDNFNPKWNEQY 435
+L V + A+ L+PM D G +D Y +T+T+ + NP+WNE +
Sbjct: 31 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETF 87
Query: 436 TWEVY--DPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490
+++ D +++ ++D ++ D +G + +S L+ + + LL
Sbjct: 88 RFQLKESDKDRRLSVEIWDW----DLTSRND-FMGSLSFGISELQKAGV-DGWFKLL 138
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-08
Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 16/121 (13%)
Query: 215 KLWY----LRVNVIEAQDVEPLDKSQLPQAFVEAQV-----GNQVLKTKLCPTRTTNPLW 265
+ L V V +A+++ P+D + L +V+ ++ KTK + NP W
Sbjct: 25 QAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK-CSLNPEW 83
Query: 266 NEDLIF-VAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLE 324
NE F + + +L + + + ++++ +G L ++ L V WF L
Sbjct: 84 NETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGIS----ELQKAGVD-GWFKLL 138
Query: 325 K 325
Sbjct: 139 S 139
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 5e-19
Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 14/122 (11%)
Query: 47 YDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKL------GNYKGKTRHFEKKSNPE 100
YD + + + + +L + V + +TR +
Sbjct: 38 YDEKNKQ--FAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLV 95
Query: 101 WKQVFAF--SKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWY 158
+ +VF S + L V V + ++ +G + E V + +WY
Sbjct: 96 FNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAE----VCRSGERSTRWY 151
Query: 159 RL 160
L
Sbjct: 152 NL 153
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 1e-07
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 18/123 (14%)
Query: 215 KLWY------LRVNVIEAQDVEPLDKSQLPQAFVEAQV------GNQVLKTKLCPTRTTN 262
L Y + +I+ ++ L + Q + + V + +T+ +
Sbjct: 35 ALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLD-ASDT 93
Query: 263 PLWNEDLIF-VAAEPFEEQ-LVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKW 320
++NE ++ ++ L + V +E LG ++SL + ++W
Sbjct: 94 LVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVC---RSGERSTRW 150
Query: 321 FNL 323
+NL
Sbjct: 151 YNL 153
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 14/118 (11%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYC------VAKYGLKWVRTRTLVDNFNPKWNEQ 434
+ I+ L + + ++ RTR L + +NE
Sbjct: 43 KQFAILIIQLSNLSAL---LQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEV 99
Query: 435 YTWEV-YDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLE-ADRIYTHSYPLL 490
+ + Y TL D C S + +G +I L+ + + T Y LL
Sbjct: 100 FWVSMSYPALHQKTL-RVDVCTTDRSHL--EECLGGAQISLAEVCRSGERSTRWYNLL 154
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 9e-19
Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 16/125 (12%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAF--S 108
L V + + L +G DP+V++ L K KT+ +K NPE+ + F +
Sbjct: 39 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 98
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVP--------PDSPLAPQWYRL 160
+ L++ V D +I +DYIG ++ R+ D + +W++L
Sbjct: 99 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE-RWHQL 157
Query: 161 EDRRD 165
++
Sbjct: 158 QNENH 162
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-08
Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 22/130 (16%)
Query: 215 KLWY------LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPT----RTTNPL 264
L Y L V +I + +D + FV+ + + K T +T NP
Sbjct: 29 SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE 88
Query: 265 WNEDLIF-VAAEPFEE-QLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDH--------- 313
+NE+ + + + L ++V + ++ +G +L ++ RL H
Sbjct: 89 FNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKD 148
Query: 314 RPVHSKWFNL 323
+ + +W L
Sbjct: 149 KKIE-RWHQL 157
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 1e-18
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 16/122 (13%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAF--S 108
L V V KAR LP + VSG DPYV+V L + K KT + N + ++F F
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 91
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVP--------PDSPLAPQWYRL 160
E ++ +E V D E R++ IG++V + P +A +W+ L
Sbjct: 92 CESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIA-KWHML 150
Query: 161 ED 162
D
Sbjct: 151 CD 152
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 32/128 (25%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTR-------------TTNPLW 265
L V V++A+ + D S L +V K L + T N ++
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYV---------KVNLYHAKKRISKKKTHVKKCTPNAVF 82
Query: 266 NEDLIF-VAAEPFEE-QLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDH--------RP 315
NE +F + E EE + V + +++E +GRL L H R
Sbjct: 83 NELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRR 142
Query: 316 VHSKWFNL 323
+KW L
Sbjct: 143 QIAKWHML 150
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 5e-18
Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 16/120 (13%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL-----GNYKGKTRHFEKKSNPEWKQVFAF--- 107
L V + A+DLP+ +PYV++ K +T+ +K P+W Q F +
Sbjct: 23 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 82
Query: 108 SKEKIQSSVLEVFV--RDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165
+ + + +LE+ + + R +++G+++ ++ P WY+L+
Sbjct: 83 HRREFRERMLEITLWDQARVREEESEFLGEILIELETA------LLDDEPHWYKLQTHDS 136
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 8e-07
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 24/127 (18%)
Query: 215 KLWY------LRVNVIEAQDVEPLDKSQLPQAFVEAQV-----GNQVLKTKLCPTRTTNP 263
KLW+ L V ++ A+D+ + + +V+ +TK +T P
Sbjct: 13 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVK-KTLEP 71
Query: 264 LWNEDLIFVAAEPFEE----QLVLTV--ENKVTPAKDEPLGRLRLSLNVIERRLDHRPVH 317
WN+ I+ + E L +T+ + +V + E LG + + L LD P
Sbjct: 72 KWNQTFIY-SPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL--LDDEPH- 127
Query: 318 SKWFNLE 324
W+ L+
Sbjct: 128 --WYKLQ 132
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 6e-06
Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 16/119 (13%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVA-----KYGLKWVRTRTLVDNFNPKWNEQY 435
L V IL A+ L + + Y + RT+T+ PKWN+ +
Sbjct: 21 HQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 77
Query: 436 TWEVYDPCTVIT----LGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490
+ + ++D + + + +G++ I L T D H Y L
Sbjct: 78 IYSPVHRREFRERMLEITLWDQARV--REEESEF-LGEILIELETALLDDE-PHWYKLQ 132
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 6e-18
Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL-----GNYKGKTRHFEKKSNPEWKQVFAF--- 107
L V + A+DLP+ +PYV++ K +T+ +K P+W Q F +
Sbjct: 20 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 79
Query: 108 SKEKIQSSVLEVFV--RDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161
+ + + +LE+ + + R +++G+++ ++ P WY+L+
Sbjct: 80 HRREFRERMLEITLWDQARVREEESEFLGEILIELETA------LLDDEPHWYKLQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 3e-07
Identities = 27/136 (19%), Positives = 54/136 (39%), Gaps = 26/136 (19%)
Query: 206 IRSKVYVSPKLWY------LRVNVIEAQDVEPLDKSQLPQAFVEA-----QVGNQVLKTK 254
+ ++ + LW+ L V ++ A+D+ + + +V+ + +TK
Sbjct: 3 LSGQLSIK--LWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTK 60
Query: 255 LCPTRTTNPLWNEDLIFVAAEPFEE----QLVLTV--ENKVTPAKDEPLGRLRLSLNVIE 308
+T P WN+ I+ E L +T+ + +V + E LG + + L
Sbjct: 61 TVK-KTLEPKWNQTFIYSPV-HRREFRERMLEITLWDQARVREEESEFLGEILIELETAL 118
Query: 309 RRLDHRPVHSKWFNLE 324
LD P W+ L+
Sbjct: 119 --LDDEPH---WYKLQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 9e-06
Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 16/118 (13%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVA-----KYGLKWVRTRTLVDNFNPKWNEQY 435
L V IL A+ L + + Y + RT+T+ PKWN+ +
Sbjct: 18 HQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 74
Query: 436 TWEVYDPCT----VITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489
+ ++ + ++D + + +G++ I L T D H Y L
Sbjct: 75 IYSPVHRREFRERMLEITLWDQARVRE---EESEFLGEILIELETALLDDE-PHWYKL 128
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 79.7 bits (197), Expect = 7e-18
Identities = 21/123 (17%), Positives = 51/123 (41%), Gaps = 16/123 (13%)
Query: 47 YDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKL----GNYKGKTRHFEKKSNPEWK 102
YD + L+V +A + G CD YV+ + G+ + +T +++ + W+
Sbjct: 21 YDCQKAE--LFVTRLEAVTSNHD---GGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWE 75
Query: 103 QVFAF--SKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRL 160
+ ++E++ ++ L + +R + R G++ ++ + QW L
Sbjct: 76 EGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA-----QWGEL 130
Query: 161 EDR 163
+
Sbjct: 131 KTS 133
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 9e-07
Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 20/122 (16%)
Query: 215 KLWY------LRVNVIEAQDVEPLDKSQLPQAFVEAQV----GNQVLKTKLCPTRTTNPL 264
L Y L V +EA + +V+ V G+ +T L R +
Sbjct: 18 CLDYDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKK-RQLHTT 73
Query: 265 WNEDLIF-VAAEPFEEQ-LVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFN 322
W E L+ +A E L LT+ ++ G LRL L+ ++W
Sbjct: 74 WEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLD----GTSVPLGAAQWGE 129
Query: 323 LE 324
L+
Sbjct: 130 LK 131
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 19/116 (16%), Positives = 29/116 (25%), Gaps = 18/116 (15%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAK----YGLKWVRTRTLVDNFNPKWNEQYT 436
L V L A + G D Y G +T + W E
Sbjct: 26 AELFVTRLEAVTS------NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLV 79
Query: 437 WEVYD---PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489
+ + P +TL + S G++R+ L L
Sbjct: 80 LPLAEEELPTATLTLTLRTC-----DRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 2e-17
Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 13/114 (11%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL-----GNYKGKTRHFEKKSNPEWKQVFAF--- 107
L + +A+ L +G DPYV++ L + K +T+ NP W + +
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90
Query: 108 SKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161
++E +Q L + V D + G +++IG+ F + ++ + LE
Sbjct: 91 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKN-----FNICLE 139
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 9e-09
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 19/125 (15%)
Query: 215 KLWY------LRVNVIEAQDVEPLDKSQLPQAFVEAQV-----GNQVLKTKLCPTRTTNP 263
L Y L+ +I A+ ++P+D + L +V+ + + L+TK T NP
Sbjct: 21 SLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLR-NTRNP 79
Query: 264 LWNEDLIF--VAAEPFEEQ-LVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKW 320
+WNE L + + E + + L ++V ++ +E +G R SL +L +
Sbjct: 80 VWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLK----KLKANQRKNFN 135
Query: 321 FNLEK 325
LE+
Sbjct: 136 ICLER 140
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 17/118 (14%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVA-----KYGLKWVRTRTLVDNFNPKWNEQY 435
L+ I+ A+GL PM D G D Y +RT+TL + NP WNE
Sbjct: 29 SNLQCTIIRAKGLKPM---DSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETL 85
Query: 436 TWEVYDPC----TVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489
+ + + V D + IG+ R L L+A++ + L
Sbjct: 86 QYHGITEEDMQRKTLRISVCDE-----DKFGHNEFIGETRFSLKKLKANQRKNFNICL 138
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 9e-17
Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 19/132 (14%)
Query: 47 YDLVEQMFYLYVRVEKARDLP-------TNPVSGSCDPYVEVKL---GNYKGKTRHFEKK 96
YDL+ L VRV +ARDLP + +PYV++ L +T K
Sbjct: 21 YDLLHNH--LTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKT 78
Query: 97 SNPEWKQVFAF--SKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLA 154
P +++ + F + Q L + V D + R IGKV + EV
Sbjct: 79 QKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDL-----VKGG 133
Query: 155 PQWYRLEDRRDD 166
W L
Sbjct: 134 HWWKALIPSGPS 145
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 8e-07
Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 19/121 (15%)
Query: 381 GILEVGILSAQGLLPM----KTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKW 431
L V ++ A+ L P +R ++ Y K L +T P +
Sbjct: 26 NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYV--KICLLPDQKNSKQTGVKRKTQKPVF 83
Query: 432 NEQYTWEVYD---PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYP 488
E+YT+E+ + L V D IGKV + L ++ +
Sbjct: 84 EERYTFEIPFLEAQRRTLLLTVVDF-----DKFSRHCVIGKVSVPLCEVDLVKGGHWWKA 138
Query: 489 L 489
L
Sbjct: 139 L 139
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 23/128 (17%)
Query: 215 KLWY------LRVNVIEAQDVEPL-------DKSQLPQAFVEAQV---GNQVLKTKLCPT 258
Y L V VIEA+D+ P +V+ + +T +
Sbjct: 18 STQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVK-R 76
Query: 259 RTTNPLWNEDLIFV--AAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPV 316
+T P++ E F E L+LTV + ++ +G++ + L +D
Sbjct: 77 KTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLC----EVDLVKG 132
Query: 317 HSKWFNLE 324
W L
Sbjct: 133 GHWWKALI 140
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 1e-16
Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 13/116 (11%)
Query: 56 LYVRVEKARDLPT-NPVSGSCDPYVEVKL-----GNYKGKTRHFEKKSNPEWKQVFAF-- 107
L V V++ L + +PYV+ L K KT NP + + +
Sbjct: 25 LVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEI 84
Query: 108 SKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR 163
+ + L+ V GR+ ++G+ M+ D L L +
Sbjct: 85 PESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDS----WKLDKKL-DHCLPLHGK 135
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 25/122 (20%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAY----------CVAKYGLKWVRTRTLVDNFNPK 430
L V + L + + ++ Y K +T D NP
Sbjct: 23 QSLVVHVKECHQLAYAD--EAKKRSNPYVKTYLLPDKSRQGKR-----KTSIKRDTVNPL 75
Query: 431 WNEQYTWEVYD---PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSY 487
++E +E+ + + V+ + G ++ +G+ I++ + + D+ H
Sbjct: 76 YDETLRYEIPESLLAQRTLQFSVWHHGRFGR-----NTFLGEAEIQMDSWKLDKKLDHCL 130
Query: 488 PL 489
PL
Sbjct: 131 PL 132
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 8e-04
Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 35/132 (26%)
Query: 215 KLWY------LRVNVIEAQDVEPLD-KSQLPQAFVEAQVGNQVLKTKLCP---------- 257
L Y L V+V E + D + +V KT L P
Sbjct: 15 SLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYV---------KTYLLPDKSRQGKRKT 65
Query: 258 ---TRTTNPLWNEDLIFV--AAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLD 312
T NPL++E L + + + L +V + ++ LG + ++ + LD
Sbjct: 66 SIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWK--LD 123
Query: 313 HRPVHSKWFNLE 324
+ H L
Sbjct: 124 KKLDH--CLPLH 133
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 2e-16
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 56 LYVRVEKARDLPT-NPVSGSCDPYVEVKL---GNYKGKTRHFEKKSNPEWKQVFAF---S 108
V +++AR LP + S + DPY+++ + +K KTR K +P + + F F
Sbjct: 24 FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIP 83
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVP 144
+IQ L + + RDD IG+V+ ++ +
Sbjct: 84 YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE 119
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 22/107 (20%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Query: 215 KLWY------LRVNVIEAQDVEPLD-KSQLPQAFVEAQV---GNQVLKTKLCPTRTTNPL 264
L Y VN+ EA+ + +D +S +++ + +KT++ +T +P
Sbjct: 14 SLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLR-KTLDPA 72
Query: 265 WNEDLIFVAAEPFEEQ---LVLTVENKVTPAKDEPLGRLRLSLNVIE 308
++E F + Q L T+ + ++D+ +G + + L+ IE
Sbjct: 73 FDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE 119
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 18/110 (16%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQY 435
V I A+GL M + T+D Y K + V+TR L +P ++E +
Sbjct: 22 KAFVVNIKEARGLPAM--DEQSMTSDPYI--KMTILPEKKHKVKTRVLRKTLDPAFDETF 77
Query: 436 TWEVYDPCTV----ITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADR 481
T+ + + + D IG+V I LS +E
Sbjct: 78 TFYGIPYTQIQELALHFTILSFDRFSR-----DDIIGEVLIPLSGIELSE 122
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 5e-16
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 14/116 (12%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL-----GNYKGKTRHFEKKSNPEWKQVFAF--- 107
L++ V +DL T +PYV+ L K KT+ K NP + ++ +
Sbjct: 22 LFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGY 80
Query: 108 SKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR 163
SKE ++ L++ V E + + ++G + + + +WY+L
Sbjct: 81 SKETLRQRELQLSVLSAESLRENFFLGGITLPLKD----FNLSKET-VKWYQLTAA 131
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-05
Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 28/124 (22%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAY----------CVAKYGLKWVRTRTLVDNFNPK 430
G L + ++ + L+ DG + Y +K +T+ NP
Sbjct: 20 GTLFIMVMHIKDLVTE---DG-ADPNPYVKTYLLPDTHKTSKR-----KTKISRKTRNPT 70
Query: 431 WNEQYTWEVYDPCTVIT----LGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHS 486
+NE + Y T+ L V + + +G + + L +
Sbjct: 71 FNEMLVYSGYSKETLRQRELQLSVLSA-----ESLRENFFLGGITLPLKDFNLSKETVKW 125
Query: 487 YPLL 490
Y L
Sbjct: 126 YQLT 129
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 26/126 (20%)
Query: 215 KLWY----LRVNVIEAQDVEPLDKSQ---------LPQAFVEAQVGNQVLKTKLCPTRTT 261
+ Y L + V+ +D+ D + LP ++ KTK+ +T
Sbjct: 14 SVSYRNGTLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSK-----RKTKISR-KTR 67
Query: 262 NPLWNEDLIF--VAAEPFEEQ-LVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHS 318
NP +NE L++ + E ++ L L+V + + ++ LG + L L L V
Sbjct: 68 NPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFN--LSKETVK- 124
Query: 319 KWFNLE 324
W+ L
Sbjct: 125 -WYQLT 129
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 6e-16
Identities = 19/125 (15%), Positives = 46/125 (36%), Gaps = 9/125 (7%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL--GNYKGKTRHFEKKSNPEWKQVFAFSKEKIQ 113
+ + V A++L DP+ ++ + T + +P+W Q + K
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD 66
Query: 114 SSVLEVFVRDREIVGRDD---YIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVK 170
S + V+ + + + ++G V N + D+ + D V+
Sbjct: 67 SITISVWNHKK--IHKKQGAGFLGCVRLLSNAISR--LKDTGYQRLDLCKLNPSDTDAVR 122
Query: 171 GEVML 175
G++++
Sbjct: 123 GQIVV 127
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 1e-11
Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 10/131 (7%)
Query: 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKY--GLKWVRTRTLVDNFNPKWNEQYTWEVY 440
+ + +L A+ L D D + + T T+ + +PKWN+ Y V
Sbjct: 7 IRLTVLCAKNLAKK---DFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVG 63
Query: 441 DPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTL--EADRIYTHSYPLLVLNPSGVK 498
+ IT+ V++ H + +G VR+ + + D Y +
Sbjct: 64 KTDS-ITISVWN--HKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDA 120
Query: 499 KMGELQLAVRF 509
G++ ++++
Sbjct: 121 VRGQIVVSLQT 131
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 4e-08
Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 22/139 (15%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQV--GNQVLKTKLCPTRTTNPLWNEDLIFVAAEP 276
+R+ V+ A+++ D +LP F + V Q T T +P WN+
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVK-NTLDPKWNQHYDLY--VG 63
Query: 277 FEEQLVLTVENKVTPAKDEP---LGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALEL 333
+ + ++V N K + LG +RL N I R L+ G+ L+L
Sbjct: 64 KTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISR-------------LKDTGYQRLDL 110
Query: 334 DKRHELKFSSRIHLRVCLE 352
K + + + ++ +
Sbjct: 111 CKLNPSD-TDAVRGQIVVS 128
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 7e-16
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 12/120 (10%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL-----GNYKGKTRHFEKKSNPEWKQVFAFS-K 109
L + + + + L + G+CDPYV++ L KT+ +P + + F F +
Sbjct: 29 LLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQ 87
Query: 110 EKIQSSVLEVFVRDREIVGR-DDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRK 168
E+ L V V +R R IG + F + + T PD ++ WY L R
Sbjct: 88 EEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLT---PDKEIS-GWYYLLGEHLGRT 143
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 9e-07
Identities = 29/161 (18%), Positives = 61/161 (37%), Gaps = 21/161 (13%)
Query: 192 HSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFV-----EAQV 246
H + V+G G + + + L +++IE + + +V
Sbjct: 6 HHHSHKVQGAGQLRLS----IDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDS 60
Query: 247 GNQVLKTKLCPTRTTNPLWNEDLIF-VAAEPFEEQLVLTVENKVTPAK-DEPLGRLRLSL 304
+ KT+ P +P ++E F V E +++L++TV N+ + ++ +G + +
Sbjct: 61 RLRHQKTQTVP-DCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGV 119
Query: 305 NVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELKFSSRI 345
+ L S W+ L L + LK + R
Sbjct: 120 KSL---LTPDKEISGWYYLL-----GEHLGRTKHLKVARRR 152
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 5e-06
Identities = 23/123 (18%), Positives = 47/123 (38%), Gaps = 26/123 (21%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYC----------VAKYGLKWVRTRTLVDNFNPK 430
+L + I+ +GL+ GT D Y + +T+T+ D +P
Sbjct: 27 RVLLLHIIEGKGLISK----QPGTCDPYVKISLIPEDSRLRHQ-----KTQTVPDCRDPA 77
Query: 431 WNEQYTWEV--YDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLE-ADRIYTHSY 487
++E + + V D + + V++ + IG + + +L D+ + Y
Sbjct: 78 FHEHFFFPVQEEDDQKRLLVTVWNRASQS----RQSGLIGCMSFGVKSLLTPDKEISGWY 133
Query: 488 PLL 490
LL
Sbjct: 134 YLL 136
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 6e-15
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 15/121 (12%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL-----GNYKGKTRHFEKKSNPEWKQVFAF--S 108
L V V R+L GS DPYV + L + + KT +K NP + Q F F S
Sbjct: 26 LIVVVHACRNLIAFSEDGS-DPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVS 84
Query: 109 KEKIQSSVLEVFVRDREIVGRDD--YIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDD 166
++Q L+V V++ D +GKV+ + QWY L +
Sbjct: 85 LPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKG-----WTQWYDLTEDSGP 139
Query: 167 R 167
Sbjct: 140 S 140
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 17/119 (14%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCV------AKYGLKWVRTRTLVDNFNPKWNEQ 434
L V + + + L+ +D Y + + +T NP +++
Sbjct: 24 NKLIVVVHACRNLIAF----SEDGSDPYVRMYLLPDKRRSGRR-KTHVSKKTLNPVFDQS 78
Query: 435 YTWEVYD---PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490
+ + V + + V ++ GG +K +GKV + L++ E + +T Y L
Sbjct: 79 FDFSVSLPEVQRRTLDVAVKNS---GGFLSKDKGLLGKVLVALASEELAKGWTQWYDLT 134
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 1e-14
Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 13/117 (11%)
Query: 56 LYVRVEKARDLPTNPVS-GSCDPYVEVKL-----GNYKGKTRHFEKKSNPEWKQVFAFSK 109
L V V +AR L P S + PYV+V L K KTR K +P ++Q F
Sbjct: 32 LEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF-D 90
Query: 110 EKIQSSVLEVFV-RDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165
E Q VL+V V D + ++G + E + S + WY+L
Sbjct: 91 ESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEE----LDLSSMV-IGWYKLFPPSS 142
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 7e-08
Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 23/146 (15%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAY----------CVAKYGLKWVRTRTLVDNFNPK 430
G LEV ++ A+ L + T Y C+AK +TR +P
Sbjct: 30 GQLEVEVIRARSLTQK--PGSKSTPAPYVKVYLLENGACIAKK-----KTRIARKTLDPL 82
Query: 431 WNEQYTWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490
+ + ++ V+ + V+ + +G +I L L+ + Y L
Sbjct: 83 YQQSLVFDESPQGKVLQVIVWGDYGRMDH----KCFMGVAQILLEELDLSSMVIGWYKL- 137
Query: 491 VLNPSGVKKMGELQLAVRFTCLSLAS 516
PS + L R + SL S
Sbjct: 138 -FPPSSLVDPTLAPLTRRASQSSLES 162
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 24/120 (20%), Positives = 39/120 (32%), Gaps = 29/120 (24%)
Query: 219 LRVNVIEAQDVEPLDKS-QLPQAFVEAQVGNQVLKTKLCPTR-------------TTNPL 264
L V VI A+ + S P +V K L T +PL
Sbjct: 32 LEVEVIRARSLTQKPGSKSTPAPYV---------KVYLLENGACIAKKKTRIARKTLDPL 82
Query: 265 WNEDLIFVAAEPFEEQLVLTV-ENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNL 323
+ + L+F P + L + V + +G ++ L LD + W+ L
Sbjct: 83 YQQSLVF-DESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLE----ELDLSSMVIGWYKL 137
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 4e-10
Identities = 23/112 (20%), Positives = 36/112 (32%), Gaps = 11/112 (9%)
Query: 52 QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEK 111
+ +L V +A L + + D Y++V G + +T +NP W F
Sbjct: 392 GLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVL 450
Query: 112 I-QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLED 162
+ L V V D + DD +G P S L
Sbjct: 451 LSTGGPLRVQVWDADYGWDDDLLGSCDRS---------PHSGFHEVTCELNH 493
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 50.7 bits (120), Expect = 1e-06
Identities = 22/135 (16%), Positives = 39/135 (28%), Gaps = 11/135 (8%)
Query: 192 HSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVL 251
H + + L +L V+ A+ + + A+++ G Q
Sbjct: 369 HDSCQCECQDSKVTNQDCCPRQRGLAHLVVSNFRAEHLWGDY-TTATDAYLKVFFGGQEF 427
Query: 252 KTKLCPTRTTNPLWNEDLIF-VAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERR 310
+T + NP W + + F L + V + D+ LG S
Sbjct: 428 RTGVVW-NNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSP------ 480
Query: 311 LDHRPVHSKWFNLEK 325
H H L
Sbjct: 481 --HSGFHEVTCELNH 493
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 2e-04
Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 24/137 (17%)
Query: 378 QPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTW 437
+ + L V A+ L T TDAY +G + RT + +N NP+W ++ +
Sbjct: 391 RGLAHLVVSNFRAEHLWGDYTTA----TDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDF 446
Query: 438 EVYD--PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPS 495
E + + V+D D +G + + + L
Sbjct: 447 ENVLLSTGGPLRVQVWDA-----DYGWDDDLLGSCDRSPHS----GFHEVTCEL------ 491
Query: 496 GVKKMGELQLAVRFTCL 512
G ++ + CL
Sbjct: 492 ---NHGRVKFSYHAKCL 505
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 6e-10
Identities = 91/692 (13%), Positives = 189/692 (27%), Gaps = 199/692 (28%)
Query: 107 FSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDD 166
+ + I S + FV + + D K + E+ + ++ RL
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMP-KSILSKEEIDHIIMSKDAVS-GTLRLFWTLLS 73
Query: 167 RKVKGEVMLAVWIGTQADEAFP---EAWHSDAATVEGEGVFNI--RSKVYVSPKLWYLRV 221
K E M+ ++ + ++ I R ++Y ++ + +
Sbjct: 74 ---KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-FAKY 129
Query: 222 NVIEAQDVEPLDKS--QL-PQAFVEAQ----VGNQVLKTKLC---PTRTTNP---LWNED 268
NV Q L ++ +L P V G + +C + W
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW--- 186
Query: 269 LIFVAAEPFEEQLVLTVEN---KVTP---AKDEPLGRLRLSLNVIERR------------ 310
+ + E ++ ++ ++ P ++ + ++L ++ I+
Sbjct: 187 -LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 311 ----LDHRPVHSKWFNLEKFGFGALEL----DKRHELKFSSRIHLRVCLEGAYHVM--DE 360
L + V + F L K+ S+ + L+ + DE
Sbjct: 246 CLLVLLN--VQNAKA-WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 361 S--------TMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAK 412
D + I++ RDG T D + K
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLT-----TNPRRLSIIAE------SIRDGLATWDNW---K 348
Query: 413 YGLKWVRTRTL---VDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGK 469
+ T + ++ P + +D L VF P S
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKM----FD-----RLSVF-----------PPS---- 384
Query: 470 VRIRLSTLE---ADRIYT---------HSYPLLVLNP-SGVKKMGELQLAVRFTCLSLAS 516
I L D I + H Y L+ P + + L ++ + +
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 517 M----IYLYAHPLLPKMHYLHPFTVNQLDSLRYQAMNIVAVRLGRAEPPLRKEVVEYMLD 572
+ + Y +PK LD Y +G +
Sbjct: 445 LHRSIVDHYN---IPKTFDSDDLIPPYLDQYFYS-------HIG------------H--- 479
Query: 573 VDSHMWSMRRS-KANFFRIVSL-FSGAISMSKWLGE-VRYWKNPVTTILVHVLFLILICY 629
H+ ++ + FR+V L F ++L + +R+
Sbjct: 480 ---HLKNIEHPERMTLFRMVFLDF-------RFLEQKIRHDSTA-------------WNA 516
Query: 630 PELILPTIFLYMFLIGIWNYR--FRPRHPPHMDTKLSWADAVHPDELDEEFDTFPTSKQQ 687
IL T L + Y+ P + L F ++
Sbjct: 517 SGSILNT------LQQLKFYKPYICDNDP-------------KYERLVNAILDFLPKIEE 557
Query: 688 DVVRMRYDRLRSVA--GRIQTVVGDMATQGER 717
+++ +Y L +A + + + Q +R
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 4e-08
Identities = 38/385 (9%), Positives = 108/385 (28%), Gaps = 102/385 (26%)
Query: 12 DYKLKDTKPQLGERWPHGGIRGAGGWISSERATSTYDLVEQMFYLYVRVEKARDLPTNPV 71
YK++ I W++ + S ++E + L +++ T+
Sbjct: 173 SYKVQCKMD--------FKIF----WLNLKNCNSPETVLEMLQKLLYQIDPNW---TSRS 217
Query: 72 SGSCDPYVEVKLGNYKGKTRHFEKKSNPE--------W-KQVF-AFSKEKIQSSVLEVFV 121
S + + + + R + K + + AF+ + +L +
Sbjct: 218 DHSSNIKLRIHSIQAE-LRRLLKSKPYENCLLVLLNVQNAKAWNAFN---LSCKIL-LTT 272
Query: 122 RDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGT 181
R +++ D++ T + D L + + +L ++
Sbjct: 273 RFKQVT---DFLS------AATTTHISLDHHSMT----LTPD------EVKSLLLKYLDC 313
Query: 182 QADEAFPEAW--HSDAATVEGEGV--FNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQL 237
+ + E + ++ E + + L +IE+ + L+ ++
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT-TIIES-SLNVLEPAEY 371
Query: 238 PQAFVE-------AQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFEEQLVLT-VENKV 289
+ F A + +L +W + + +V+ +
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSL----------IWFDV------IKSDVMVVVNKLHKYS 415
Query: 290 TPAKDEPLGRLR---LSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHELK------ 340
K + + L + + + +H ++ + D +
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSI--VDHYNI-PKTFDSDDLIPPYLDQY 472
Query: 341 -FSSRIHLRVCLEGAYHVMDESTMY 364
+S H+ +H +
Sbjct: 473 FYS---HI------GHH-LKNIEHP 487
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 1e-09
Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNP-EWKQVFAFSKEK--I 112
L V ++ +L G D +V +R E + ++ + F +
Sbjct: 23 LIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSID 77
Query: 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEV 143
++ VLE+ + + V + IG + +V
Sbjct: 78 RNEVLEIQIFNYSKVFSNKLIGTFRMVLQKV 108
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 1e-04
Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 19/132 (14%)
Query: 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNP-KWNEQYTWEVYD 441
L V + + L RG D + + +R L + + ++E + W V
Sbjct: 23 LIVHLKTVSEL--------RGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVAS 74
Query: 442 PCT---VITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVK 498
V+ + +F+ + + IG R+ L + + S L ++ +
Sbjct: 75 SIDRNEVLEIQIFNYSKVF-----SNKLIGTFRMVLQKVVEENRVEVSDTL--IDDNNAI 127
Query: 499 KMGELQLAVRFT 510
L + VR+
Sbjct: 128 IKTSLSMEVRYQ 139
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 3e-06
Identities = 28/120 (23%), Positives = 54/120 (45%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSS 115
L V V +A +L +G +PY E+ +G+ TR + NP+W F + +
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQD 448
Query: 116 VLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVML 175
VL + + DR+ DD++G+ + ++ T P+ + E + V+ ++ L
Sbjct: 449 VLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQL 508
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 24/110 (21%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 205 NIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPL 264
+++ + + L V+VIEA +++ + + E +G+Q T+ T NP
Sbjct: 375 AYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQ-DTLNPK 433
Query: 265 WNEDLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHR 314
WN + F + +++ L LT+ ++ + D+ LGR + + I + +
Sbjct: 434 WNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESK 483
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 48.8 bits (115), Expect = 4e-06
Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 12/116 (10%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL-GNYKGKTRHFEK---KSNPEWKQVFAFSKEK 111
L + + +AR+LP Y E+ L +T + W + F F+
Sbjct: 13 LKLWIIEARELPP-----KKRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67
Query: 112 IQSSVLEVFVRD---REIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164
++ RD + + Y+G V + + R +
Sbjct: 68 AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGS 123
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 46.1 bits (108), Expect = 4e-05
Identities = 31/194 (15%), Positives = 56/194 (28%), Gaps = 19/194 (9%)
Query: 383 LEVGILSAQGLLPMKTRDGRGTTDAYC-VAKYGLKWVRTRTL---VDNFNPKWNEQYTWE 438
L++ I+ A+ L P K YC + + + RT + W E + +
Sbjct: 13 LKLWIIEARELPPKK--------RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFN 64
Query: 439 VYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVK 498
+ L ++ + K +G V + ++TL YP+ + SG
Sbjct: 65 NLPAVRALRLHLYRDSDKKRKKDKAGY-VGLVTVPVATLAGRHFTEQWYPVTLPTGSG-G 122
Query: 499 KMGELQLAVRFTCLSLASMIYLYAHPLLPKMHY-----LHPFTVNQLDSLRYQAMNIVAV 553
G + + K Y L + ++
Sbjct: 123 SGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMSILPMELYKEFAEYVTNHYRMLCA 182
Query: 554 RLGRAEPPLRKEVV 567
L A KE V
Sbjct: 183 VLEPALNVKGKEEV 196
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 789 | |||
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 100.0 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 100.0 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 100.0 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.97 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.85 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.83 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.83 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.83 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.83 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.83 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.83 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.82 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.82 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.81 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.81 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.81 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.81 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.81 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.81 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.8 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.8 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.8 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.8 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.8 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.8 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.79 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.79 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.79 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.79 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.78 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.78 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.78 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.78 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.78 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.77 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.77 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.77 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.77 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.76 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.76 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.76 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.76 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.75 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.75 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.74 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.74 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.74 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.74 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.74 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.73 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.73 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.72 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.72 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.72 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.72 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.71 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.71 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.71 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.7 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.7 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.7 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.7 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.7 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.69 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.69 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.69 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.69 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.68 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.68 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.67 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.66 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.65 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.64 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.64 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.63 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.61 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.6 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.57 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.56 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.56 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.55 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.5 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.48 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.45 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.41 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.37 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.25 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.23 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.23 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.19 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.13 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.07 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.06 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 98.99 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.95 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.92 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.82 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.76 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 94.07 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 89.2 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 87.2 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 84.42 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 83.5 |
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-34 Score=300.60 Aligned_cols=248 Identities=24% Similarity=0.365 Sum_probs=209.4
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEccC--C
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFSKEK--I 112 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~~~~--~ 112 (789)
.|..++++.|+... +.|.|+|++|+||+.++..|.+||||++++++ +.++|+++++|.||+|||+|.|.+.. .
T Consensus 5 ~G~l~~~l~y~~~~--~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~ 82 (284)
T 2r83_A 5 LGKLQYSLDYDFQN--NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 82 (284)
T ss_dssp CCEEEEEEEEETTT--TEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGC
T ss_pred eeEEEEEEEEECCC--CEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHh
Confidence 35789999999877 99999999999999999899999999999975 47799999999999999999999853 3
Q ss_pred CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCC-CccceEEEEEEEEeecCCCcCCccC
Q 003882 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDD-RKVKGEVMLAVWIGTQADEAFPEAW 191 (789)
Q Consensus 113 ~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~-~~~~G~l~l~~~~~~~~d~~~~~~~ 191 (789)
....|.|+|||++.++++++||++.++|.++..+...+ .|++|....+. ....|+|.+++.+.
T Consensus 83 ~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~-----~w~~L~~~~~~~~~~~G~i~l~l~~~----------- 146 (284)
T 2r83_A 83 AGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE-----EWRDLQSAEKEEQEKLGDICFSLRYV----------- 146 (284)
T ss_dssp TTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEE-----EEEECBCCSSCCCCCCCEEEEEEEEE-----------
T ss_pred CcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcce-----eEEEeeccccccccccccEEEEEEec-----------
Confidence 46899999999999999999999999999998765444 89999886542 24679999988775
Q ss_pred CCCCcccCCCccccccccccccCccEEEEEEEEEeecCCCCCCCCCCCeEEEEEEC--C---eEEeeecccCCCCCCccC
Q 003882 192 HSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVG--N---QVLKTKLCPTRTTNPLWN 266 (789)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~--~---~~~kT~~~~~~t~nP~wn 266 (789)
+..+.|.|.|++|++|+.++.++.+||||++.+. + ..++|+++++ +.||.||
T Consensus 147 ----------------------p~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wn 203 (284)
T 2r83_A 147 ----------------------PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYN 203 (284)
T ss_dssp ----------------------TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEE
T ss_pred ----------------------CcCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecC-CCCCEEc
Confidence 2334699999999999999988999999999985 2 4678999987 9999999
Q ss_pred ceeEEEeeCC--CCCeEEEEEEEccCCCCCCceEEEEEeccccccc--------cCCCCCcceeEEcccc
Q 003882 267 EDLIFVAAEP--FEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERR--------LDHRPVHSKWFNLEKF 326 (789)
Q Consensus 267 e~f~f~~~~~--~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~--------~~~~~~~~~w~~L~~~ 326 (789)
|.|.|.+... ....|.|+|||++..+++++||++.+++..+... ...+....+|++|.+.
T Consensus 204 e~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~ 273 (284)
T 2r83_A 204 ESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273 (284)
T ss_dssp EEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred eeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence 9999998654 2447999999999999999999999999764221 1123445789999876
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=297.77 Aligned_cols=250 Identities=26% Similarity=0.348 Sum_probs=205.1
Q ss_pred ccccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeeeeeccccCCCCCeeccEEEEEccC--
Q 003882 37 WISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLG---NYKGKTRHFEKKSNPEWKQVFAFSKEK-- 111 (789)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~~~~-- 111 (789)
..|...+++.|+... +.|.|+|++|++|+.+|..|.+||||++++. .+.++|+++++|+||+|||+|.|.+..
T Consensus 5 ~~G~l~~~l~y~~~~--~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 82 (296)
T 1dqv_A 5 PCGRISFALRYLYGS--DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAE 82 (296)
T ss_dssp SSCEEEEEEECCSSS--CEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGG
T ss_pred eeeEEEEEEEEeCCC--CEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHH
Confidence 356789999999977 9999999999999999999999999999993 467899999999999999999999843
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEE-ccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeecCCCcCCcc
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFD-MNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQADEAFPEA 190 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~-l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~d~~~~~~ 190 (789)
.....|+|+|||+|.++++++||++.++ +.++..... ....|++|....+.....|+|.+++.|.
T Consensus 83 l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~----~~~~w~~L~~~~~~~~~~G~i~vsl~y~---------- 148 (296)
T 1dqv_A 83 LAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPP----DRPLWRDILEGGSEKADLGELNFSLCYL---------- 148 (296)
T ss_dssp GSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCS----SCCCCEECBCCSSCCSCCCEEEEEEEEE----------
T ss_pred hcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCc----cceeeeccccccccccccceEEEEEEec----------
Confidence 3356999999999999999999999996 544443211 1237999987665545689999998875
Q ss_pred CCCCCcccCCCccccccccccccCccEEEEEEEEEeecCCCCCCCCCCCeEEEEEEC--C---eEEeeecccCCCCCCcc
Q 003882 191 WHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVG--N---QVLKTKLCPTRTTNPLW 265 (789)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~--~---~~~kT~~~~~~t~nP~w 265 (789)
+..+.|.|.|++|++|+.++..+.+||||++++. + ++++|+++++ +.||.|
T Consensus 149 -----------------------~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~w 204 (296)
T 1dqv_A 149 -----------------------PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN-TLNPTY 204 (296)
T ss_dssp -----------------------TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCS-CSSCEE
T ss_pred -----------------------cccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecC-CCCCeE
Confidence 2235799999999999999988999999999996 2 5789999987 999999
Q ss_pred CceeEEEeeCC--CCCeEEEEEEEccCCCCCCceEEEEEecccccc-----cc----CCCCCcceeEEcccc
Q 003882 266 NEDLIFVAAEP--FEEQLVLTVENKVTPAKDEPLGRLRLSLNVIER-----RL----DHRPVHSKWFNLEKF 326 (789)
Q Consensus 266 ne~f~f~~~~~--~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~-----~~----~~~~~~~~w~~L~~~ 326 (789)
||.|.|.+... ....|.|+|||++..+++++||++.+++..+.. +. ..+....+|+.|...
T Consensus 205 ne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~ 276 (296)
T 1dqv_A 205 NEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEE 276 (296)
T ss_dssp EECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred CceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence 99999988654 245799999999999999999999999987642 00 022345667777665
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=281.27 Aligned_cols=244 Identities=23% Similarity=0.299 Sum_probs=201.1
Q ss_pred cceEEEEEEEEeecCCCcCCccCCCCCcccCCCccccccccccccCccEEEEEEEEEeecCCCCCCCCCCCeEEEEEECC
Q 003882 169 VKGEVMLAVWIGTQADEAFPEAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGN 248 (789)
Q Consensus 169 ~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~~ 248 (789)
..|+|.+++.|. +..+.|.|+|++|++|+.++.++.+||||++.+++
T Consensus 4 ~~G~l~~~l~y~---------------------------------~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~ 50 (284)
T 2r83_A 4 KLGKLQYSLDYD---------------------------------FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLP 50 (284)
T ss_dssp CCCEEEEEEEEE---------------------------------TTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEET
T ss_pred ceeEEEEEEEEE---------------------------------CCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEc
Confidence 479999999886 23357999999999999999889999999999963
Q ss_pred ---eEEeeecccCCCCCCccCceeEEEeeCC--CCCeEEEEEEEccCCCCCCceEEEEEeccccccccCCCCCcceeEEc
Q 003882 249 ---QVLKTKLCPTRTTNPLWNEDLIFVAAEP--FEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNL 323 (789)
Q Consensus 249 ---~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L 323 (789)
+.++|+++++ +.||.|||+|.|.+... ....|.|+|||++.++++++||++.++|.++.. ......|++|
T Consensus 51 ~~~~~~~T~~~~~-~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~----~~~~~~w~~L 125 (284)
T 2r83_A 51 DKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF----GHVTEEWRDL 125 (284)
T ss_dssp CTTSCEECCCCCS-CSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCC----SSCEEEEEEC
T ss_pred CCCceEeCCcccC-CCCCeeCceEEEEechHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhccc----CCcceeEEEe
Confidence 5789999987 99999999999998643 457899999999998999999999999999863 2346789999
Q ss_pred cccCcccchhcccccccccceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCC
Q 003882 324 EKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRG 403 (789)
Q Consensus 324 ~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~ 403 (789)
.... .......|.|.+.+.+. +..|.|.|.|++|+||+.++ ..|
T Consensus 126 ~~~~--------~~~~~~~G~i~l~l~~~-------------------------p~~~~l~v~v~~a~~L~~~d---~~~ 169 (284)
T 2r83_A 126 QSAE--------KEEQEKLGDICFSLRYV-------------------------PTAGKLTVVILEAKNLKKMD---VGG 169 (284)
T ss_dssp BCCS--------SCCCCCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCCS---TTS
T ss_pred eccc--------cccccccccEEEEEEec-------------------------CcCCceEEEEEEeECCCCcC---CCC
Confidence 8752 11223468888777542 23479999999999999874 457
Q ss_pred CcCcEEEEEEC--C---EEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCCCCccEEEEEECc
Q 003882 404 TTDAYCVAKYG--L---KWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLS 475 (789)
Q Consensus 404 ~~dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~ 475 (789)
.+||||++.+. + .+.+|+++++|+||+|||.|.|.+..+ ...|.|+|||++.++ ++++||++.|+++
T Consensus 170 ~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~-----~~~~iG~~~i~l~ 244 (284)
T 2r83_A 170 LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG-----KNDAIGKVFVGYN 244 (284)
T ss_dssp CCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSS-----CCCEEEEEEEETT
T ss_pred CcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCC-----CCcEEEEEEECCC
Confidence 89999999983 3 468999999999999999999999754 347999999999986 8999999999998
Q ss_pred ccc------------cCceEeeeEeeee
Q 003882 476 TLE------------ADRIYTHSYPLLV 491 (789)
Q Consensus 476 ~l~------------~~~~~~~~~~L~~ 491 (789)
.+. .+.....||+|..
T Consensus 245 ~~~~~~~~w~~~~~~~~~~~~~W~~L~~ 272 (284)
T 2r83_A 245 STGAELRHWSDMLANPRRPIAQWHTLQV 272 (284)
T ss_dssp CCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred CCCcHHHHHHHHHHCCCCchheeeecCC
Confidence 632 3456788999864
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=281.82 Aligned_cols=245 Identities=21% Similarity=0.300 Sum_probs=198.7
Q ss_pred ccceEEEEEEEEeecCCCcCCccCCCCCcccCCCccccccccccccCccEEEEEEEEEeecCCCCCCCCCCCeEEEEEE-
Q 003882 168 KVKGEVMLAVWIGTQADEAFPEAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQV- 246 (789)
Q Consensus 168 ~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l- 246 (789)
...|+|.+++.|. +..+.|.|+|++|++|+.++.++.+||||++++
T Consensus 4 ~~~G~l~~~l~y~---------------------------------~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~ 50 (296)
T 1dqv_A 4 APCGRISFALRYL---------------------------------YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLL 50 (296)
T ss_dssp CSSCEEEEEEECC---------------------------------SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECT
T ss_pred CeeeEEEEEEEEe---------------------------------CCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEE
Confidence 4589999999875 233579999999999999999999999999999
Q ss_pred --CCeEEeeecccCCCCCCccCceeEEEeeCC--CCCeEEEEEEEccCCCCCCceEEEEEe-ccccccccCCCCCcceeE
Q 003882 247 --GNQVLKTKLCPTRTTNPLWNEDLIFVAAEP--FEEQLVLTVENKVTPAKDEPLGRLRLS-LNVIERRLDHRPVHSKWF 321 (789)
Q Consensus 247 --~~~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~l~i~V~d~d~~~~d~~iG~~~i~-l~~l~~~~~~~~~~~~w~ 321 (789)
+.+.++|+++++ +.||.|||+|.|.+... ....|.|+|||++.++++++||++.++ +.++.. .......|+
T Consensus 51 ~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~---~~~~~~~w~ 126 (296)
T 1dqv_A 51 PDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAE---QPPDRPLWR 126 (296)
T ss_dssp TSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGS---SCSSCCCCE
T ss_pred cCCCeeEeCCccCC-CCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCCCCCceEEEEEecccccccc---CCccceeee
Confidence 467899999987 99999999999998543 345899999999999999999999996 444432 122356799
Q ss_pred EccccCcccchhcccccccccceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCC
Q 003882 322 NLEKFGFGALELDKRHELKFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDG 401 (789)
Q Consensus 322 ~L~~~~~~~~~g~~~~~~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~ 401 (789)
+|.... ......|.|.+.++.. +..|.|.|.|++|+||+.++ .
T Consensus 127 ~L~~~~---------~~~~~~G~i~vsl~y~-------------------------~~~~~l~v~v~~a~~L~~~d---~ 169 (296)
T 1dqv_A 127 DILEGG---------SEKADLGELNFSLCYL-------------------------PTAGLLTVTIIKASNLKAMD---L 169 (296)
T ss_dssp ECBCCS---------SCCSCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCCS---S
T ss_pred cccccc---------ccccccceEEEEEEec-------------------------cccceeEEEEEEeecCCccC---C
Confidence 997652 2233478888877642 23479999999999999884 4
Q ss_pred CCCcCcEEEEEEC--C---EEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCCCCccEEEEEE
Q 003882 402 RGTTDAYCVAKYG--L---KWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVFDNCHLGGSGTKPDSRIGKVRIR 473 (789)
Q Consensus 402 ~~~~dpyv~v~~~--~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~ 473 (789)
.|.+||||++.+. + .++||+++++|+||+|||.|.|.+... ...|.|+|||++.++ .|++||.+.|+
T Consensus 170 ~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~-----~~~~iG~~~i~ 244 (296)
T 1dqv_A 170 TGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIG-----HNEVIGVCRVG 244 (296)
T ss_dssp SSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSS-----CCEEEEECCCS
T ss_pred CCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCC-----CCceEEEEEEC
Confidence 5789999999995 3 568999999999999999999998754 358999999999986 89999999999
Q ss_pred Cccccc-------------CceEeeeEeeee
Q 003882 474 LSTLEA-------------DRIYTHSYPLLV 491 (789)
Q Consensus 474 l~~l~~-------------~~~~~~~~~L~~ 491 (789)
+..+.. ++....|++|..
T Consensus 245 l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~ 275 (296)
T 1dqv_A 245 PEAADPHGREHWAEMLANPRKPVEHWHQLVE 275 (296)
T ss_dssp SCTTCHHHHHHHHTSSSSSSSCSCSCCCCBB
T ss_pred CccCCchhHHHHHHHHhCCCCceeEeeeccC
Confidence 998642 445667777753
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.7e-21 Score=175.57 Aligned_cols=126 Identities=32% Similarity=0.435 Sum_probs=111.7
Q ss_pred eeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeC
Q 003882 45 STYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDR 124 (789)
Q Consensus 45 ~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~ 124 (789)
..|.. +.+.|.|+|++|++|+..+..|.+||||++++++++++|+++++|.||+|||+|.|.+.+. ...|.|+|||+
T Consensus 6 ~~~~~--~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~-~~~l~i~V~d~ 82 (133)
T 2ep6_A 6 SGDVK--DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDE 82 (133)
T ss_dssp CCSCC--CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEE
T ss_pred ccccC--CceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCC-CCEEEEEEEEC
Confidence 34444 4499999999999999999899999999999999999999999999999999999999875 48899999999
Q ss_pred CCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 125 EIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 125 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
+.++++++||++.++|.++..+. . .||+|.+..+.....|+|++++.|.
T Consensus 83 d~~~~~~~lG~~~i~l~~l~~~~--~-----~w~~L~~~~~~~~~~G~i~l~i~~~ 131 (133)
T 2ep6_A 83 DGDKPPDFLGKVAIPLLSIRDGQ--P-----NCYVLKNKDLEQAFKGVIYLEMDLI 131 (133)
T ss_dssp ETTEEEEECCBCEEEGGGCCSSC--C-----EECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred CCCCCCCeeEEEEEEHHHccCCC--c-----eEEEeecCCCCCccceEEEEEEEEE
Confidence 99989999999999999997542 2 8999998776556789999998874
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-20 Score=173.41 Aligned_cols=125 Identities=28% Similarity=0.468 Sum_probs=110.1
Q ss_pred cCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCC
Q 003882 376 WKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCH 455 (789)
Q Consensus 376 ~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~ 455 (789)
+.++.|.|.|+|++|+||++++ ..|.+||||+++++++.++|+++++++||.|||.|.|.+.++...|.|+|||++.
T Consensus 8 ~~~~~~~L~v~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~ 84 (133)
T 2ep6_A 8 DVKDVGILQVKVLKAADLLAAD---FSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDG 84 (133)
T ss_dssp SCCCSEEEEEEEEEEESCCCSS---SSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEET
T ss_pred ccCCceEEEEEEEeeECCCCCC---CCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCC
Confidence 3566799999999999999874 4578999999999999999999999999999999999999888899999999998
Q ss_pred CCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEee
Q 003882 456 LGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTC 511 (789)
Q Consensus 456 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 511 (789)
.+ +|++||++.|+|.++..+. ..||+|......+ +..|+|+|+++|.+
T Consensus 85 ~~-----~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~-~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 85 DK-----PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYLEMDLIY 132 (133)
T ss_dssp TE-----EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEEEEEEEE
T ss_pred CC-----CCCeeEEEEEEHHHccCCC--ceEEEeecCCCCC-ccceEEEEEEEEEe
Confidence 75 7899999999999998765 6899998654333 45799999999875
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-20 Score=170.58 Aligned_cols=123 Identities=25% Similarity=0.421 Sum_probs=108.8
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCC---CCceEEEEEEeCCCCCC
Q 003882 53 MFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKI---QSSVLEVFVRDREIVGR 129 (789)
Q Consensus 53 ~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~---~~~~l~v~V~d~~~~~~ 129 (789)
.+.|.|+|++|+||+..+. |.+||||++++++++++|+++++|.||+|||+|.|.+... ....|.|+|||++.+++
T Consensus 6 ~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~ 84 (140)
T 2dmh_A 6 SGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQ 84 (140)
T ss_dssp CCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSS
T ss_pred CcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCC
Confidence 3889999999999999998 9999999999999999999999999999999999998643 46899999999999999
Q ss_pred CceeEEEEEEccccCCCCCCCCCCCCeeEE---cccCCCCCccceEEEEEEEEeec
Q 003882 130 DDYIGKVVFDMNEVPTRVPPDSPLAPQWYR---LEDRRDDRKVKGEVMLAVWIGTQ 182 (789)
Q Consensus 130 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~---L~~~~~~~~~~G~l~l~~~~~~~ 182 (789)
|++||++.|+|.++..+...+ .|++ |.+..+. ...|+|.+++.|.+.
T Consensus 85 ~~~lG~~~i~l~~l~~~~~~~-----~w~~l~~l~~~~~~-~~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 85 NKLIGTATVALKDLTGDQSRS-----LPYKLISLLNEKGQ-DTGATIDLVIGYDPP 134 (140)
T ss_dssp CCCCEEEEEEGGGTCSSSCEE-----EEEEEEEEECTTCC-EEEEEEEEEEEECCC
T ss_pred CceEEEEEEEHHHhccCCCce-----eEEeeeeccCCCCC-CCCCEEEEEEEEECC
Confidence 999999999999998775544 8988 7665543 567999999999754
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=172.09 Aligned_cols=128 Identities=27% Similarity=0.381 Sum_probs=104.5
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCC
Q 003882 52 QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN------YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDRE 125 (789)
Q Consensus 52 ~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~------~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~ 125 (789)
..+.|.|+|++|++|+..+..|.+||||++++.+ +.++|+++++|.||+|||+|.|.+... ...|.|+|||++
T Consensus 18 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~l~~~V~d~d 96 (153)
T 3b7y_A 18 NSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ-QHRLLFEVFDEN 96 (153)
T ss_dssp TCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT-TCEEEEEEEECC
T ss_pred CccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC-CCEEEEEEEECC
Confidence 4589999999999999999889999999999984 578999999999999999999999765 589999999999
Q ss_pred CCCCCceeEEEEEEccccCCCCCCC-CCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 126 IVGRDDYIGKVVFDMNEVPTRVPPD-SPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 126 ~~~~d~~lG~~~i~l~~l~~~~~~~-~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
.++++++||++.|+|.++..+.... ..+...||+|.+..+.....|+|.+++.|.
T Consensus 97 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~ 152 (153)
T 3b7y_A 97 RLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL 152 (153)
T ss_dssp SSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEEC
T ss_pred CCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEe
Confidence 9999999999999999998765321 233459999988765446789999999885
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-20 Score=174.88 Aligned_cols=118 Identities=27% Similarity=0.403 Sum_probs=105.2
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeeeeeccccCCCCCeeccEEEEEccC--C
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLG---NYKGKTRHFEKKSNPEWKQVFAFSKEK--I 112 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~~~~--~ 112 (789)
.|...+++.|+... +.|.|+|++|++|+..+..+.+||||++++. .++++|+++++|.||+|||+|.|.+.. .
T Consensus 20 ~G~l~~~l~y~~~~--~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l 97 (143)
T 3f04_A 20 LGKLQYSLDYDFQN--NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97 (143)
T ss_dssp CCEEEEEEEEETTT--TEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHH
T ss_pred eEEEEEEEEEeCCC--CEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhc
Confidence 56678999999877 9999999999999999988999999999994 357899999999999999999999853 3
Q ss_pred CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEccc
Q 003882 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLED 162 (789)
Q Consensus 113 ~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 162 (789)
....|.|+|||++.++++++||++.++|.++..+...+ .||+|+.
T Consensus 98 ~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~-----~W~~L~~ 142 (143)
T 3f04_A 98 GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE-----EWRDLQS 142 (143)
T ss_dssp TTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEE-----EEEECBC
T ss_pred CCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcc-----eEEECcC
Confidence 45899999999999999999999999999998876555 9999975
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-20 Score=173.79 Aligned_cols=119 Identities=24% Similarity=0.283 Sum_probs=102.9
Q ss_pred CCccEEEEEEEEccCCCCCccCC-------CCCCcCcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCCceEEEE
Q 003882 378 QPIGILEVGILSAQGLLPMKTRD-------GRGTTDAYCVAKYGLKW-VRTRTLVDNFNPKWNEQYTWEVYDPCTVITLG 449 (789)
Q Consensus 378 ~~~g~l~v~v~~a~~L~~~~~~~-------~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~ 449 (789)
...|.|+|+|++|+||+++|... ..|.+||||+|.++++. .||+++++|+||+|||.|.|.+.+ ...|.|+
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~ 104 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELA 104 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEE
Confidence 45699999999999999886310 13679999999998876 799999999999999999999875 5689999
Q ss_pred EEeCCCCCCCCCCCCCccEEEEEECcccccC----ceEeeeEeeeecCCCCCccceEEEEEEEEe
Q 003882 450 VFDNCHLGGSGTKPDSRIGKVRIRLSTLEAD----RIYTHSYPLLVLNPSGVKKMGELQLAVRFT 510 (789)
Q Consensus 450 v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 510 (789)
|||+|.++ .|++||++.|+|.++..+ ...+.||+|. +.|+|+|+++|.
T Consensus 105 V~D~d~~~-----~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~--------~~G~i~l~l~~~ 156 (157)
T 2fk9_A 105 VFHETPLG-----YDHFVANCTLQFQELLRTTGASDTFEGWVDLE--------PEGKVFVVITLT 156 (157)
T ss_dssp EEECCSSS-----SCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB--------SSCEEEEEEEEC
T ss_pred EEECCCCC-----CCCEEEEEEEEHHHhhcccCCCCcccEEEECC--------CCcEEEEEEEEE
Confidence 99999986 899999999999999865 6789999995 259999999874
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=170.52 Aligned_cols=119 Identities=29% Similarity=0.530 Sum_probs=107.1
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCC------
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIV------ 127 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~------ 127 (789)
+.|.|+|++|++|+..+..|.+||||+++++++.++|+++++|.||.|||+|.|.+... ...|.|+|||++..
T Consensus 17 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~d~d~~~~~~~~ 95 (148)
T 3kwu_A 17 AKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS-SDRIKVRVLDEDDDIKSRVK 95 (148)
T ss_dssp EEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECST-TCEEEEEEEECCCSHHHHHH
T ss_pred cEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCC-CCEEEEEEEECCCCcccccc
Confidence 89999999999999999999999999999999999999999999999999999999766 48999999999986
Q ss_pred -----CCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 128 -----GRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 128 -----~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
+++++||++.++|.++... .+ .||+|....+.....|+|.+++.|.
T Consensus 96 ~~~~~~~~~~lG~~~i~l~~l~~~--~~-----~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 96 QRFKRESDDFLGQTIIEVRTLSGE--MD-----VWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp TTTSSCSSEEEEEEEEEGGGCCSE--EE-----EEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred ccccCCCCccEEEEEEEHHHCcCC--CC-----EEEEcccCCCCCCCceEEEEEEEEE
Confidence 7899999999999999432 23 8999997766556789999999875
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=169.18 Aligned_cols=123 Identities=23% Similarity=0.323 Sum_probs=107.7
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeC----CCceEEEEEEeCCC
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYD----PCTVITLGVFDNCH 455 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~v~d~~~ 455 (789)
.|.|.|+|++|+||+.++ . +.+||||+++++++++||+++++++||+|||.|.|.+.. ....|.|+|||++.
T Consensus 6 ~g~L~v~v~~a~~L~~~~---~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~ 81 (140)
T 2dmh_A 6 SGMLRVIVESASNIPKTK---F-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFET 81 (140)
T ss_dssp CCEEEEEEEEEESCCCCS---S-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTC
T ss_pred CcEEEEEEEEeeCCCCCC---C-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCC
Confidence 489999999999999874 4 789999999999999999999999999999999999975 36799999999998
Q ss_pred CCCCCCCCCCccEEEEEECcccccCceEeeeEe---eeecCCCCCccceEEEEEEEEeecC
Q 003882 456 LGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYP---LLVLNPSGVKKMGELQLAVRFTCLS 513 (789)
Q Consensus 456 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~---L~~~~~~g~~~~G~i~l~~~f~~~~ 513 (789)
++ .|++||++.|+|.++..+.....|++ |... .+....|+|+|+++|.|..
T Consensus 82 ~~-----~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~--~~~~~~G~l~l~~~~~p~~ 135 (140)
T 2dmh_A 82 IG-----QNKLIGTATVALKDLTGDQSRSLPYKLISLLNE--KGQDTGATIDLVIGYDPPS 135 (140)
T ss_dssp SS-----SCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECT--TCCEEEEEEEEEEEECCCB
T ss_pred CC-----CCceEEEEEEEHHHhccCCCceeEEeeeeccCC--CCCCCCCEEEEEEEEECCC
Confidence 76 78999999999999998888889988 5432 3444579999999998753
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.2e-20 Score=169.03 Aligned_cols=123 Identities=24% Similarity=0.337 Sum_probs=108.7
Q ss_pred CCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeecccc-CCCCCccccEEEEEEeCCCceEEEEEEeCCCC
Q 003882 378 QPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLV-DNFNPKWNEQYTWEVYDPCTVITLGVFDNCHL 456 (789)
Q Consensus 378 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~-~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~ 456 (789)
.+.|.|.|+|++|+||+.++. .+.+||||+|+++++.+||++++ +++||+|||.|.|.+.+....|.|+|||++.+
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d~---~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~ 83 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDADF---LNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVG 83 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCS---SCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSC
T ss_pred CCcEEEEEEEEeccCCCCccc---CCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCC
Confidence 356899999999999998743 47899999999999999999999 89999999999999998788999999999987
Q ss_pred CCCCCCCCCccEEEEEECccc-ccCceEeeeEeeeecCCCCCccceEEEEEEEEeec
Q 003882 457 GGSGTKPDSRIGKVRIRLSTL-EADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTCL 512 (789)
Q Consensus 457 ~~~~~~~d~~lG~~~i~l~~l-~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 512 (789)
+ +|++||++.|+|.++ ..+.....||+|. . +.+..|+|+|+++|.|.
T Consensus 84 ~-----~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~---~~~~~G~i~l~l~~~p~ 131 (136)
T 1wfj_A 84 T-----EDDAVGEATIPLEPVFVEGSIPPTAYNVV-K---DEEYKGEIWVALSFKPS 131 (136)
T ss_dssp T-----TTCCSEEEEEESHHHHHHSEEEEEEEEEE-E---TTEEEEEEEEEEEEEEC
T ss_pred C-----CCceEEEEEEEHHHhccCCCCCcEEEEee-c---CCccCEEEEEEEEEEeC
Confidence 6 799999999999999 5566678999997 2 23457999999999875
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-19 Score=173.82 Aligned_cols=130 Identities=25% Similarity=0.380 Sum_probs=104.4
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCC
Q 003882 52 QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN------YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDRE 125 (789)
Q Consensus 52 ~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~------~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~ 125 (789)
..+.|.|+|++|++|+..+..|.+||||+|++++ .+++|++++++.||+|||+|.|.+... ...|.|+|||++
T Consensus 6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~L~~~V~d~d 84 (176)
T 3m7f_B 6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ-RHRILFEVFDEN 84 (176)
T ss_dssp TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT-TCEEEEEEEECC
T ss_pred CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC-CCEEEEEEEECC
Confidence 3489999999999999999899999999999986 578999999999999999999999754 479999999999
Q ss_pred CCCCCceeEEEEEEccccCCCCCC-CCCCCCeeEEcccCCCCCccceEEEEEEEEeec
Q 003882 126 IVGRDDYIGKVVFDMNEVPTRVPP-DSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQ 182 (789)
Q Consensus 126 ~~~~d~~lG~~~i~l~~l~~~~~~-~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 182 (789)
.++++++||++.|+|.++...... +......||+|....+.+...|+|.+++.|.+.
T Consensus 85 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 85 RLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp ----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred CCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 999999999999999999876432 223344899999876665678999999999865
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.2e-20 Score=169.85 Aligned_cols=123 Identities=22% Similarity=0.354 Sum_probs=108.0
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeecccc-CCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCC
Q 003882 52 QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFE-KKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRD 130 (789)
Q Consensus 52 ~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~-~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d 130 (789)
+.+.|.|+|++|++|+..+..|.+||||+|++++++++|++++ +|.||+|||+|.|.+.+ ....|.|+|||++.+++|
T Consensus 8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~l~~~V~d~~~~~~d 86 (136)
T 1wfj_A 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-GTTELKAKIFDKDVGTED 86 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEES-SCCEEEEEECCSSSCTTT
T ss_pred CcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECC-CCCEEEEEEEECCCCCCC
Confidence 4589999999999999999889999999999999999999998 89999999999999977 468999999999999999
Q ss_pred ceeEEEEEEccccCC-CCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeecC
Q 003882 131 DYIGKVVFDMNEVPT-RVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQA 183 (789)
Q Consensus 131 ~~lG~~~i~l~~l~~-~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~ 183 (789)
++||++.|+|.++.. +.... .||+|. .. ....|+|.+++.|.+..
T Consensus 87 ~~lG~~~i~l~~l~~~~~~~~-----~w~~L~-~~--~~~~G~i~l~l~~~p~~ 132 (136)
T 1wfj_A 87 DAVGEATIPLEPVFVEGSIPP-----TAYNVV-KD--EEYKGEIWVALSFKPSG 132 (136)
T ss_dssp CCSEEEEEESHHHHHHSEEEE-----EEEEEE-ET--TEEEEEEEEEEEEEECC
T ss_pred ceEEEEEEEHHHhccCCCCCc-----EEEEee-cC--CccCEEEEEEEEEEeCC
Confidence 999999999999943 32222 899998 22 35789999999998643
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.9e-20 Score=171.19 Aligned_cols=119 Identities=23% Similarity=0.374 Sum_probs=99.6
Q ss_pred ceeEEEEEEEEeeCCCCCCC----------CCCCCcEEEEEECCee-eeeccccCCCCCeeccEEEEEccCCCCceEEEE
Q 003882 52 QMFYLYVRVEKARDLPTNPV----------SGSCDPYVEVKLGNYK-GKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVF 120 (789)
Q Consensus 52 ~~~~L~V~v~~a~~L~~~~~----------~g~~dpyv~v~~~~~~-~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~ 120 (789)
..|.|.|+|++|+||+++|. .|.+||||+|.+++++ .||+++++|+||+|||+|.|.+.+ ...|.|+
T Consensus 27 ~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~--~~~L~~~ 104 (157)
T 2fk9_A 27 FNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD--GGHLELA 104 (157)
T ss_dssp EEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEEEE
T ss_pred CccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC--CCEEEEE
Confidence 34999999999999998873 3679999999999875 699999999999999999999865 3689999
Q ss_pred EEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 121 VRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 121 V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
|||++.+++|++||++.|+|.++..+.. .......||+|++ .|.|++.+.+.
T Consensus 105 V~D~d~~~~dd~iG~~~i~l~~l~~~~~-~~~~~~~W~~L~~-------~G~i~l~l~~~ 156 (157)
T 2fk9_A 105 VFHETPLGYDHFVANCTLQFQELLRTTG-ASDTFEGWVDLEP-------EGKVFVVITLT 156 (157)
T ss_dssp EEECCSSSSCEEEEEEEEEHHHHHHHHT-TCSEEEEEEECBS-------SCEEEEEEEEC
T ss_pred EEECCCCCCCCEEEEEEEEHHHhhcccC-CCCcccEEEECCC-------CcEEEEEEEEE
Confidence 9999999999999999999999985400 0111238999974 58899888763
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-19 Score=166.91 Aligned_cols=120 Identities=24% Similarity=0.390 Sum_probs=104.9
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCC---
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHL--- 456 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~--- 456 (789)
.|.|+|+|++|+||+.++. .|.+||||++.++++.++|+++++|+||.|||.|.|.+..+...|.|+|||++..
T Consensus 16 ~~~L~V~v~~a~~L~~~d~---~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~~~ 92 (148)
T 3kwu_A 16 SAKISITVVCAQGLQAKDK---TGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDIKS 92 (148)
T ss_dssp CEEEEEEEEEEESCCCCST---TSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSHHH
T ss_pred ccEEEEEEEeeeCCCCCCC---CCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCccc
Confidence 4899999999999998743 5789999999999999999999999999999999999998888999999999974
Q ss_pred --------CCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEe
Q 003882 457 --------GGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFT 510 (789)
Q Consensus 457 --------~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 510 (789)
+ .|++||++.|+|.++. .....||+|...... ....|+|+|++.|.
T Consensus 93 ~~~~~~~~~-----~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~~~-~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 93 RVKQRFKRE-----SDDFLGQTIIEVRTLS--GEMDVWYNLDKRTDK-SAVSGAIRLHISVE 146 (148)
T ss_dssp HHHTTTSSC-----SSEEEEEEEEEGGGCC--SEEEEEEECBCSSTT-CCCCCEEEEEEEEE
T ss_pred cccccccCC-----CCccEEEEEEEHHHCc--CCCCEEEEcccCCCC-CCCceEEEEEEEEE
Confidence 4 7899999999999993 456899999754322 23569999999885
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=166.10 Aligned_cols=116 Identities=20% Similarity=0.334 Sum_probs=99.4
Q ss_pred ccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeeeeeccccCCCCCeeccEEEEE-cc--CC
Q 003882 41 ERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLG-----NYKGKTRHFEKKSNPEWKQVFAFS-KE--KI 112 (789)
Q Consensus 41 ~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~-~~--~~ 112 (789)
..+.+.|+... +.|.|+|++|+||+. +.+|.+||||+|++. ..++||+++++|.||+|||+|.|. +. ++
T Consensus 9 ~~~~~~~~~~~--~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l 85 (134)
T 2b3r_A 9 GAVKLSVSYRN--GTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETL 85 (134)
T ss_dssp CEEEEEEEEET--TEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHH
T ss_pred EEEEEEEeecC--CEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHh
Confidence 45677777766 999999999999997 678899999999993 357899999999999999999999 64 33
Q ss_pred CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 113 ~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
....|.|+|||++.++++++||++.++|.++..+...+ .||+|++..
T Consensus 86 ~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~-----~W~~L~~~~ 132 (134)
T 2b3r_A 86 RQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETV-----KWYQLTAAT 132 (134)
T ss_dssp TTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEE-----EEEECBC--
T ss_pred CcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcc-----eeEECCCcc
Confidence 46899999999999999999999999999998765544 999998753
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=168.59 Aligned_cols=121 Identities=29% Similarity=0.446 Sum_probs=106.3
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEcc---C
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFSKE---K 111 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~~~---~ 111 (789)
.|...+++.|.... +.|.|+|++|++|+..+..|.+||||+|++.+ ++++|+++++|.||+|||+|.|.+. +
T Consensus 12 ~G~l~~~l~y~~~~--~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 89 (141)
T 2d8k_A 12 LGRIQFSVGYNFQE--STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEK 89 (141)
T ss_dssp CCEEEEEEEECSSS--CCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHH
T ss_pred eeEEEEEEEEeCCC--CEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHH
Confidence 56789999999866 99999999999999999899999999999953 5789999999999999999999852 2
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 165 (789)
.....|.|+|||++.++++++||++.|+|.++..+...+ .||+|++...
T Consensus 90 ~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~-----~W~~L~~~~~ 138 (141)
T 2d8k_A 90 VVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQT-----FWKDLKPSGP 138 (141)
T ss_dssp HTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEE-----EEECCEECCC
T ss_pred cccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCcc-----EEEECcCCCC
Confidence 345889999999999999999999999999998875444 8999998653
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-19 Score=165.58 Aligned_cols=115 Identities=23% Similarity=0.491 Sum_probs=97.3
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeeeeeccccCCCCCeeccEEEEEcc---
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLG-----NYKGKTRHFEKKSNPEWKQVFAFSKE--- 110 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~~~--- 110 (789)
|...+++.|+... +.|.|+|++|+||+..+..|.+||||++++. ..+++|+++++|.||+|||+|.|.+.
T Consensus 5 G~l~~~l~y~~~~--~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 82 (129)
T 2bwq_A 5 GQLSIKLWFDKVG--HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRR 82 (129)
T ss_dssp CEEEEEEEEETTT--TEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGG
T ss_pred EEEEEEEEEccCC--CEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHH
Confidence 4678999999887 9999999999999999989999999999993 46889999999999999999999952
Q ss_pred CCCCceEEEEEEeCCCCCC--CceeEEEEEEccccCCCCCCCCCCCCeeEEcc
Q 003882 111 KIQSSVLEVFVRDREIVGR--DDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161 (789)
Q Consensus 111 ~~~~~~l~v~V~d~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 161 (789)
+.....|.|+|||++.+++ +++||++.++|.++..+. .+ +||+|+
T Consensus 83 ~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~-----~W~~Lq 129 (129)
T 2bwq_A 83 EFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EP-----HWYKLQ 129 (129)
T ss_dssp GGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CE-----EEEECC
T ss_pred HhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CC-----ccEECc
Confidence 3346899999999999887 999999999999998754 33 999985
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.2e-20 Score=174.09 Aligned_cols=118 Identities=15% Similarity=0.168 Sum_probs=103.3
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---e---eeeeccccCCCCCeeccEEEEEccC
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN---Y---KGKTRHFEKKSNPEWKQVFAFSKEK 111 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~---~~~T~~~~~t~nP~wne~f~f~~~~ 111 (789)
.|..++++.|+... +.|.|+|++|+||+++|..|.+||||++++.+ . ++||+++++|+||+|||+|.|.+..
T Consensus 29 ~G~l~~sl~y~~~~--~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~ 106 (155)
T 2z0u_A 29 ATRIQIALKYDEKN--KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSY 106 (155)
T ss_dssp CEEEEEEEEEETTT--TEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCH
T ss_pred cEEEEEEEEEcCCC--CEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCH
Confidence 45789999999877 99999999999999999999999999999976 2 6899999999999999999999854
Q ss_pred --CCCceEEEEEEeCCCCCCCceeEEEEEEccccCC-CCCCCCCCCCeeEEccc
Q 003882 112 --IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPT-RVPPDSPLAPQWYRLED 162 (789)
Q Consensus 112 --~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~~~w~~L~~ 162 (789)
+....|.|+|||+|.++++++||++.|+|.++.. .... .+||+|.+
T Consensus 107 ~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~-----~~W~~L~~ 155 (155)
T 2z0u_A 107 PALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERS-----TRWYNLLS 155 (155)
T ss_dssp HHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCE-----EEEEEEBC
T ss_pred HHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCcc-----ccceEccC
Confidence 2357899999999999999999999999999964 3222 38999863
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=169.16 Aligned_cols=121 Identities=22% Similarity=0.454 Sum_probs=105.6
Q ss_pred ccccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeeeeeccccCCCCCeeccEEEEEc-c
Q 003882 37 WISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLG-----NYKGKTRHFEKKSNPEWKQVFAFSK-E 110 (789)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~~-~ 110 (789)
..|...+++.|+... +.|.|+|++|+||+..+..+.+||||++++. .++++|+++++|.||+|||+|.|.+ .
T Consensus 6 ~~G~i~~~l~y~~~~--~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~ 83 (141)
T 1v27_A 6 SGGQLSIKLWFDKVG--HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVH 83 (141)
T ss_dssp CCCEEEEEEEEETTT--TEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCC
T ss_pred cccEEEEEEEEeCCC--CEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCC
Confidence 356789999999877 9999999999999999989999999999993 4678999999999999999999995 2
Q ss_pred --CCCCceEEEEEEeCCCCCC--CceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC
Q 003882 111 --KIQSSVLEVFVRDREIVGR--DDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165 (789)
Q Consensus 111 --~~~~~~l~v~V~d~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 165 (789)
+.....|.|+|||++.+++ +++||++.|+|.++..+. .+ .||+|.+...
T Consensus 84 ~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~-----~W~~L~~~~~ 136 (141)
T 1v27_A 84 RREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EP-----HWYKLQTHDS 136 (141)
T ss_dssp TTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EE-----EEEECBCCSS
T ss_pred HHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CC-----ceEECccccc
Confidence 3345899999999999887 999999999999987653 33 8999998754
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-19 Score=168.56 Aligned_cols=126 Identities=24% Similarity=0.355 Sum_probs=102.1
Q ss_pred CCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC------EEEeeccccCCCCCccccEEEEEEeCCCceEEEEE
Q 003882 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL------KWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGV 450 (789)
Q Consensus 377 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v 450 (789)
.+..|.|+|+|++|+||+.++ ..|.+||||++++++ +.+||+++++|+||+|||.|.|.+......|.|+|
T Consensus 16 ~~~~~~L~V~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V 92 (153)
T 3b7y_A 16 EENSRIVRVRVIAGIGLAKKD---ILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEV 92 (153)
T ss_dssp CTTCEEEEEEEEEEESCC----------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEE
T ss_pred CCCccEEEEEEEEeeCCCCCC---CCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEE
Confidence 345689999999999999874 347899999999963 57999999999999999999999988778999999
Q ss_pred EeCCCCCCCCCCCCCccEEEEEECcccccCceE------eeeEeeeecCCCCCccceEEEEEEEEee
Q 003882 451 FDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIY------THSYPLLVLNPSGVKKMGELQLAVRFTC 511 (789)
Q Consensus 451 ~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~------~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 511 (789)
||++.++ +|++||++.|+|.++..+... ..||+|......+ +..|+|+|++.|.|
T Consensus 93 ~d~d~~~-----~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 93 FDENRLT-----RDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYLP 153 (153)
T ss_dssp EECCSSS-----CCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTC-CCCSEEEEEEEECC
T ss_pred EECCCCc-----CCCeeEEEEEEHHHcccCCCcccccccccccccccccCCC-CcceEEEEEEEEeC
Confidence 9999876 889999999999999876532 5899997554322 45699999999865
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-19 Score=168.97 Aligned_cols=119 Identities=27% Similarity=0.398 Sum_probs=105.4
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeeeeeccccCCCCCeeccEEEEEccC--C
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLG---NYKGKTRHFEKKSNPEWKQVFAFSKEK--I 112 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~~~~--~ 112 (789)
.|...+++.|+... +.|.|+|++|+||+..+..+.+||||+|++. .++++|+++++|.||+|||+|.|.+.. .
T Consensus 28 ~G~l~~~l~y~~~~--~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l 105 (152)
T 1rsy_A 28 LGKLQYSLDYDFQN--NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 105 (152)
T ss_dssp CCEEEEEEEEETTT--TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHH
T ss_pred ceEEEEEEEEeCCC--CEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHc
Confidence 45678999999877 9999999999999999988999999999995 357899999999999999999998753 2
Q ss_pred CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccC
Q 003882 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR 163 (789)
Q Consensus 113 ~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 163 (789)
....|.|+|||++.++++++||++.|+|.++..+...+ .||+|.+.
T Consensus 106 ~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~-----~W~~L~~~ 151 (152)
T 1rsy_A 106 GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE-----EWRDLQSA 151 (152)
T ss_dssp TTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEE-----EEEECBCC
T ss_pred CCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcc-----eEEECCCC
Confidence 46899999999999999999999999999998765544 99999864
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.8e-19 Score=163.49 Aligned_cols=118 Identities=17% Similarity=0.313 Sum_probs=102.1
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC----eeeeeccccCCCCCeeccEEEEEccC--
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN----YKGKTRHFEKKSNPEWKQVFAFSKEK-- 111 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~----~~~~T~~~~~t~nP~wne~f~f~~~~-- 111 (789)
.|...+++.|+... +.|.|+|++|++ +|..|.+||||+|++.+ .+++|+++++|+||+|||+|.|.+..
T Consensus 12 ~G~l~~sl~y~~~~--~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~ 86 (138)
T 1wfm_A 12 APKLHYCLDYDCQK--AELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEE 86 (138)
T ss_dssp CCEEEEEEEEETTT--TEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTS
T ss_pred ceEEEEEEEEeCCC--CEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHH
Confidence 46789999999877 999999999994 57788999999999953 35799999999999999999999853
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 165 (789)
.....|.|+|||+|.+++|++||++.++|.++......+ .|++|.+...
T Consensus 87 l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~-----~W~~L~~~~~ 135 (138)
T 1wfm_A 87 LPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA-----QWGELKTSGP 135 (138)
T ss_dssp STTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCC-----EEEECCCCSC
T ss_pred cCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCccccc-----ceeeCcCCCc
Confidence 346799999999999999999999999999997654444 9999998653
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-19 Score=169.75 Aligned_cols=122 Identities=18% Similarity=0.234 Sum_probs=105.3
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNP-VSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK 111 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~ 111 (789)
.|...+++.|+... +.|.|+|++|+||+..+ ..|.+||||++++.+ .+++|+++++|.||+|||+|.|.+..
T Consensus 9 ~G~l~~sl~y~~~~--~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 86 (148)
T 3fdw_A 9 TGRIAFSLKYEQQT--QSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPE 86 (148)
T ss_dssp CCEEEEEEEEETTT--TEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCS
T ss_pred ceEEEEEEEEeCCC--CEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeCh
Confidence 35678999999877 99999999999999888 578999999999974 37899999999999999999999854
Q ss_pred C--CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCC
Q 003882 112 I--QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDD 166 (789)
Q Consensus 112 ~--~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~ 166 (789)
. ....|.|+|||++.++++++||++.++|.++..+...+ .||+|+++...
T Consensus 87 ~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~-----~W~~L~~~~~~ 138 (148)
T 3fdw_A 87 SLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLD-----HCLPLHGKISA 138 (148)
T ss_dssp TTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSE-----EEEECBCC---
T ss_pred hHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCcc-----ceEECcCcccc
Confidence 3 35689999999999999999999999999998765554 99999987644
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-19 Score=163.87 Aligned_cols=119 Identities=20% Similarity=0.288 Sum_probs=101.6
Q ss_pred ccEEEEEEEEccCCCCCccCCC--------CCCcCcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCCceEEEEE
Q 003882 380 IGILEVGILSAQGLLPMKTRDG--------RGTTDAYCVAKYGLKW-VRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGV 450 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~--------~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v 450 (789)
.|.|+|+|++|+||+++|.... .+.+||||++.++++. .+|+++++|+||+|||.|.|.+.+. ..|.|+|
T Consensus 5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~V 83 (136)
T 1gmi_A 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELAV 83 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEEE
T ss_pred ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEEEE
Confidence 3899999999999998864210 1349999999998765 7999999999999999999999875 8999999
Q ss_pred EeCCCCCCCCCCCCCccEEEEEECcccccC--ceEeeeEeeeecCCCCCccceEEEEEEEEeec
Q 003882 451 FDNCHLGGSGTKPDSRIGKVRIRLSTLEAD--RIYTHSYPLLVLNPSGVKKMGELQLAVRFTCL 512 (789)
Q Consensus 451 ~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 512 (789)
||+|.++ +|++||++.|+|.++..+ ...+.|++|. +.|+|+|+++|...
T Consensus 84 ~d~d~~~-----~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 84 FHDAPIG-----YDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PEGKVYVIIDLSGS 134 (136)
T ss_dssp EECCSSS-----SCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SSCEEEEEEEEEEE
T ss_pred EeCCCCC-----CCCEEEEEEEEHHHhcccCCCCccEEEEcC--------CCeEEEEEEEEEec
Confidence 9999876 799999999999999864 3468999985 35999999999764
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=159.89 Aligned_cols=120 Identities=15% Similarity=0.256 Sum_probs=101.7
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC--eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCC-
Q 003882 53 MFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN--YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGR- 129 (789)
Q Consensus 53 ~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~--~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~- 129 (789)
...|.|+|++|++|+..|..|.+||||++++++ +.++|+++++|+||+|||+|.|.+... ..|.|+|||++.+++
T Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~l~~~v~d~d~~~~~ 81 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT--DSITISVWNHKKIHKK 81 (132)
T ss_dssp EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT--CCEEEEEEEGGGTTSS
T ss_pred eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC--CEEEEEEEECCCCCCC
Confidence 467999999999999999999999999999985 788999999999999999999998765 359999999999876
Q ss_pred --CceeEEEEEEccccCCC-CCCCCCCCCeeEEcccCCC--CCccceEEEEEEEE
Q 003882 130 --DDYIGKVVFDMNEVPTR-VPPDSPLAPQWYRLEDRRD--DRKVKGEVMLAVWI 179 (789)
Q Consensus 130 --d~~lG~~~i~l~~l~~~-~~~~~~~~~~w~~L~~~~~--~~~~~G~l~l~~~~ 179 (789)
|++||++.+++..+... .... .|++|....+ .....|+|.+++..
T Consensus 82 ~~d~~lG~~~i~l~~l~~~~~~~~-----~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 82 QGAGFLGCVRLLSNAISRLKDTGY-----QRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp TTTTEEEEEEECHHHHHHHTTSCC-----EEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred CCCCceEEEEEeHHHhhcccccCc-----EEEeeeecCCCCCCceeEEEEEEEEc
Confidence 89999999999988332 2222 8999987632 23468999998864
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-19 Score=166.06 Aligned_cols=120 Identities=27% Similarity=0.316 Sum_probs=103.5
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC-
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK- 111 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~- 111 (789)
.|...+++.|+... +.|.|+|++|+||+.++..| +||||+|++.+ .+++|+++++|.||+|||+|.|.+..
T Consensus 10 ~G~l~~~l~y~~~~--~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 86 (142)
T 2dmg_A 10 LGQIQLTIRHSSQR--NKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLP 86 (142)
T ss_dssp SCEEEEEEEEETTT--TEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHH
T ss_pred cceEEEEEEEeCCC--CEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHH
Confidence 56788999998876 99999999999999999888 99999999954 57899999999999999999999843
Q ss_pred -CCCceEEEEEEeCCCCCC--CceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCC
Q 003882 112 -IQSSVLEVFVRDREIVGR--DDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRD 165 (789)
Q Consensus 112 -~~~~~l~v~V~d~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~ 165 (789)
+....|.|+|||++.+++ +++||++.|+|.++......+ .||+|.+..+
T Consensus 87 ~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~-----~W~~L~~~~~ 138 (142)
T 2dmg_A 87 EVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWT-----QWYDLTEDSG 138 (142)
T ss_dssp HHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBC-----CBCCCBCSCS
T ss_pred HhCcCEEEEEEEECCCccccCCcEEEEEEEeccccccccccc-----ceeeccCCCC
Confidence 234699999999998764 579999999999998765444 8999998754
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=168.37 Aligned_cols=126 Identities=24% Similarity=0.360 Sum_probs=100.6
Q ss_pred CCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC------EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEE
Q 003882 378 QPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL------KWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVF 451 (789)
Q Consensus 378 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~ 451 (789)
...|.|+|+|++|+||+.++ ..|.+||||+|.+++ +.++|+++++++||.|||.|.|.+......|.|+||
T Consensus 5 ~~~g~L~V~v~~a~~L~~~d---~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~ 81 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKKD---ILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVF 81 (176)
T ss_dssp TTCEEEEEEEEEEESCC------CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEE
T ss_pred CCcEEEEEEEEEeeCCCCcC---CCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEE
Confidence 34689999999999999874 357899999999965 679999999999999999999999977789999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccCceE-e-----eeEeeeecCCCCCccceEEEEEEEEeec
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEADRIY-T-----HSYPLLVLNPSGVKKMGELQLAVRFTCL 512 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~-~-----~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 512 (789)
|++.++ .|++||++.|+|.++..+... . .||+|......+ +..|+|+|+++|.|.
T Consensus 82 d~d~~~-----~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 82 DENRLT-----RDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYLPK 142 (176)
T ss_dssp ECC---------CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTC-CCCSEEEEEEEECC-
T ss_pred ECCCCC-----CCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCC-ccCEEEEEEEEEEeC
Confidence 999876 889999999999999876533 2 799997654333 346999999999876
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.2e-19 Score=168.74 Aligned_cols=127 Identities=18% Similarity=0.171 Sum_probs=104.8
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 53 MFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 53 ~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
.+.|.|+|++|++|+..+..+.+||||+|+++++++||+++++|+||+|||+|.|.+.. ...|.|+|||++.+++|++
T Consensus 35 ~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~--~~~L~~~V~D~d~~~~dd~ 112 (173)
T 2nq3_A 35 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVL 112 (173)
T ss_dssp CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCCEE
T ss_pred ceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC--CCEEEEEEEECCCCCCCce
Confidence 37899999999999944434559999999999999999999999999999999999854 6899999999999999999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEee
Q 003882 133 IGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGT 181 (789)
Q Consensus 133 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 181 (789)
||++.++|.++.............|++|....+.....|+|.+++.+..
T Consensus 113 lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~ 161 (173)
T 2nq3_A 113 LGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ 161 (173)
T ss_dssp EEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred EEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeee
Confidence 9999999999876432111111379999987544467899999988764
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-19 Score=167.97 Aligned_cols=117 Identities=27% Similarity=0.480 Sum_probs=102.4
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe--------------eeeeccccCCCCCeeccE
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY--------------KGKTRHFEKKSNPEWKQV 104 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~--------------~~~T~~~~~t~nP~wne~ 104 (789)
|...+++.|+ . +.|.|+|++|+||+.++..|.+||||++++.+. +++|+++++|.||+|||+
T Consensus 7 G~i~~~l~y~--~--~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~ 82 (142)
T 1rh8_A 7 GEIQLQINYD--L--GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQT 82 (142)
T ss_dssp CEEEEEEEEE--T--TEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEE
T ss_pred eEEEEEEEEc--C--CEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCE
Confidence 4678999998 3 789999999999999998999999999999873 479999999999999999
Q ss_pred EEEE-cc--CCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 105 FAFS-KE--KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 105 f~f~-~~--~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
|.|. +. ++....|.|+|||++.++++++||++.|+|.++......+ .||+|++..
T Consensus 83 f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~-----~W~~L~~~~ 140 (142)
T 1rh8_A 83 VIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTP-----RWYPLKEQT 140 (142)
T ss_dssp EEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCC-----EEEECBCCC
T ss_pred EEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCC-----eEEECCccC
Confidence 9997 43 3346899999999999999999999999999987755444 999998764
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=7.8e-19 Score=162.27 Aligned_cols=117 Identities=21% Similarity=0.356 Sum_probs=100.2
Q ss_pred eeEEEEEEEEeeCCCCCCCCCC-----------CCcEEEEEECCee-eeeccccCCCCCeeccEEEEEccCCCCceEEEE
Q 003882 53 MFYLYVRVEKARDLPTNPVSGS-----------CDPYVEVKLGNYK-GKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVF 120 (789)
Q Consensus 53 ~~~L~V~v~~a~~L~~~~~~g~-----------~dpyv~v~~~~~~-~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~ 120 (789)
.+.|.|+|++|+||++.|..+. +||||++.++++. .+|+++.+|.||+|||+|.|.+.+. ..|.|+
T Consensus 5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~--~~L~~~ 82 (136)
T 1gmi_A 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG--RKIELA 82 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE--CEEEEE
T ss_pred ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC--CEEEEE
Confidence 3889999999999998875433 9999999998865 6999999999999999999998664 799999
Q ss_pred EEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEee
Q 003882 121 VRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGT 181 (789)
Q Consensus 121 V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 181 (789)
|||++.+++|++||++.+++.++..+... ....|++|++ .|+|++++.|..
T Consensus 83 V~d~d~~~~dd~iG~~~i~l~~l~~~~~~---~~~~w~~L~~-------~G~i~l~l~~~~ 133 (136)
T 1gmi_A 83 VFHDAPIGYDDFVANCTIQFEELLQNGSR---HFEDWIDLEP-------EGKVYVIIDLSG 133 (136)
T ss_dssp EEECCSSSSCEEEEEEEEEHHHHTSTTCS---EEEEEEECBS-------SCEEEEEEEEEE
T ss_pred EEeCCCCCCCCEEEEEEEEHHHhcccCCC---CccEEEEcCC-------CeEEEEEEEEEe
Confidence 99999999999999999999999875321 1238999864 589999998864
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=9.4e-19 Score=165.22 Aligned_cols=118 Identities=25% Similarity=0.388 Sum_probs=102.8
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEc--c
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSK--E 110 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~--~ 110 (789)
.|...+++.|+... +.|.|+|++|+||+..+ .|.+||||+|++.+ .+++|+++++|.||+|||+|.|.+ .
T Consensus 13 ~G~~~lsL~y~~~~--~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 89 (153)
T 3fbk_A 13 QGAGQLRLSIDAQD--RVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEE 89 (153)
T ss_dssp CCCCEEEEEEEESS--SEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGG
T ss_pred CCEEEEEEEEECCC--CEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccH
Confidence 45779999999988 99999999999999998 68999999999943 468999999999999999999998 4
Q ss_pred CCCCceEEEEEEeCCCCCC-CceeEEEEEEccccCC-CCCCCCCCCCeeEEcccCC
Q 003882 111 KIQSSVLEVFVRDREIVGR-DDYIGKVVFDMNEVPT-RVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 111 ~~~~~~l~v~V~d~~~~~~-d~~lG~~~i~l~~l~~-~~~~~~~~~~~w~~L~~~~ 164 (789)
+.. ..|.|+|||++.+++ |++||++.++|.++.. +.... .||+|.+..
T Consensus 90 ~~~-~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~-----~W~~L~~~~ 139 (153)
T 3fbk_A 90 DDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEIS-----GWYYLLGEH 139 (153)
T ss_dssp GTT-SEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEE-----EEEECBCTT
T ss_pred HhC-CEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccc-----cEEECCChh
Confidence 443 569999999999877 9999999999999985 44333 899999865
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.77 E-value=8.5e-19 Score=163.43 Aligned_cols=119 Identities=22% Similarity=0.387 Sum_probs=104.5
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEE-ccC
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFS-KEK 111 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~-~~~ 111 (789)
.|...+++.|+... +.|.|+|++|++|+..+..|.+||||+|++.+ .+++|+++++|.||+|||+|.|. +..
T Consensus 15 ~G~l~~~l~y~~~~--~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~ 92 (142)
T 2chd_A 15 LGALEFSLLYDQDN--SNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITE 92 (142)
T ss_dssp CCEEEEEEEEEGGG--TEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCH
T ss_pred cceEEEEEEEeCCC--CEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCH
Confidence 45688999999766 99999999999999999899999999999976 67899999999999999999998 532
Q ss_pred --CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccC
Q 003882 112 --IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR 163 (789)
Q Consensus 112 --~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 163 (789)
.....|.|+|||++.++++++||++.|+|.++..+.... .|++|+.+
T Consensus 93 ~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~-----~~~~L~~p 141 (142)
T 2chd_A 93 EDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKN-----FNICLERV 141 (142)
T ss_dssp HHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEE-----EEEECBCC
T ss_pred HHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccE-----EEEecccC
Confidence 224789999999999999999999999999999876554 78888764
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=7.3e-19 Score=160.28 Aligned_cols=117 Identities=18% Similarity=0.240 Sum_probs=98.5
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC---EEEeeccccCCCCCccccEEEEEEeC-CCceEEEEEEeCCC
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL---KWVRTRTLVDNFNPKWNEQYTWEVYD-PCTVITLGVFDNCH 455 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v~d~~~ 455 (789)
.|.|.|+|++|+||+.++..+..|.+||||++++++ +.+||+++++++||+|||.|.|.+.. ....|.|+|||++.
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~ 81 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY 81 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence 379999999999999853223347899999999975 78999999999999999999999964 46799999999997
Q ss_pred CCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEE
Q 003882 456 LGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVR 508 (789)
Q Consensus 456 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 508 (789)
. +|++||++.|+|.++..+.....|++|.. ...|.|++++.
T Consensus 82 ~------~~~~iG~~~i~l~~l~~~~~~~~~~~L~~------~~~g~i~~~le 122 (126)
T 1rlw_A 82 V------MDETLGTATFTVSSMKVGEKKEVPFIFNQ------VTEMVLEMSLE 122 (126)
T ss_dssp S------CCEEEEEEEEEGGGSCTTCEEEEEEEETT------TEEEEEEEEEE
T ss_pred C------CCceeEEEEEEHHHccCCCcEEEEEEcCC------CceEEEEEEEE
Confidence 5 58899999999999999999999999962 13466666654
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=157.86 Aligned_cols=114 Identities=23% Similarity=0.393 Sum_probs=98.4
Q ss_pred eEEEEEEEEeeCCCCC---CCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCC
Q 003882 54 FYLYVRVEKARDLPTN---PVSGSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIV 127 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~---~~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~ 127 (789)
+.|.|+|++|+||+.+ +..|.+||||++++++ ++++|+++++|.||+|||+|.|.+.......|.|+|||++.+
T Consensus 3 ~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~~ 82 (126)
T 1rlw_A 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV 82 (126)
T ss_dssp EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSS
T ss_pred cEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCCC
Confidence 7899999999999984 5568999999999996 688999999999999999999999666678999999999987
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEE
Q 003882 128 GRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVW 178 (789)
Q Consensus 128 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~ 178 (789)
++++||++.++|.++..+...+ .|++|.+. ..|.|.+++.
T Consensus 83 -~~~~iG~~~i~l~~l~~~~~~~-----~~~~L~~~-----~~g~i~~~le 122 (126)
T 1rlw_A 83 -MDETLGTATFTVSSMKVGEKKE-----VPFIFNQV-----TEMVLEMSLE 122 (126)
T ss_dssp -CCEEEEEEEEEGGGSCTTCEEE-----EEEEETTT-----EEEEEEEEEE
T ss_pred -CCceeEEEEEEHHHccCCCcEE-----EEEEcCCC-----ceEEEEEEEE
Confidence 5999999999999998766555 89999762 3566666653
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=159.49 Aligned_cols=121 Identities=21% Similarity=0.290 Sum_probs=103.9
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCCC-CCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEE-ccC-
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVS-GSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFS-KEK- 111 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~-g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~-~~~- 111 (789)
.|...+++.|+... +.|.|+|++|+||+.++.. +.+||||++++.+ ++++|+++++|.||+|||+|.|. +..
T Consensus 8 ~G~l~~~l~y~~~~--~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~ 85 (138)
T 1ugk_A 8 LGTLFFSLEYNFER--KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYT 85 (138)
T ss_dssp CCEEEEEEEEEGGG--TEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCST
T ss_pred cEEEEEEEEEECCC--CEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHH
Confidence 46788999998876 9999999999999999984 8999999999974 68899999999999999999996 532
Q ss_pred -CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 112 -IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 112 -~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
.....|.|+|||++.++++++||++.|+|.++....... ..|++|+...
T Consensus 86 ~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~----~~~~~l~~~~ 135 (138)
T 1ugk_A 86 QIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKM----LMNREIISGP 135 (138)
T ss_dssp TGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCE----EEEEECBSSS
T ss_pred HhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcc----hhhhhhhcCC
Confidence 345799999999999999999999999999998764321 2679998754
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-18 Score=162.36 Aligned_cols=120 Identities=28% Similarity=0.330 Sum_probs=103.4
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCC-CC------CCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEE
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTN-PV------SGSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAF 107 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~-~~------~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f 107 (789)
.|...+++.|+... +.|.|+|++|+||+.. +. .+.+||||+|++.+ ++++|+++++|.||+|||+|.|
T Consensus 12 ~G~l~~~l~y~~~~--~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f 89 (147)
T 2enp_A 12 LGMLHFSTQYDLLH--NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTF 89 (147)
T ss_dssp CCEEEEEEEEETTT--TEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEE
T ss_pred ceEEEEEEEEcCCC--CEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEE
Confidence 56789999999877 9999999999999984 33 35899999999974 5789999999999999999999
Q ss_pred EccCC--CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 108 SKEKI--QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 108 ~~~~~--~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
.+... ....|.|+|||++.++++++||++.|+|.++....... .|++|++..
T Consensus 90 ~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~-----~w~~L~~~~ 143 (147)
T 2enp_A 90 EIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGH-----WWKALIPSG 143 (147)
T ss_dssp CCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCC-----EEECCBCCC
T ss_pred EeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCcc-----EEEEeecCC
Confidence 98532 34689999999999999999999999999998765444 899998754
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-18 Score=166.87 Aligned_cols=117 Identities=26% Similarity=0.307 Sum_probs=101.5
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCC-CCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPV-SGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK 111 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~-~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~ 111 (789)
.|...+++.|. .+.|.|+|++|+||+.+|. .|.+||||+|++.+ .+++|+++++|.||+|||+|.|.+..
T Consensus 18 ~G~l~~~l~y~----~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 93 (171)
T 2q3x_A 18 MGDIQIGMEDK----KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP 93 (171)
T ss_dssp CCEEEEEEEEE----TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC
T ss_pred ccEEEEEEEEC----CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC
Confidence 45678888883 3889999999999999985 78999999999975 27899999999999999999999854
Q ss_pred CCCceEEEEEE-eCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 112 IQSSVLEVFVR-DREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 112 ~~~~~l~v~V~-d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
. ...|.|+|| |++.++++++||++.|+|.++..+...+ .||+|+...
T Consensus 94 ~-~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~-----~W~~L~~~~ 141 (171)
T 2q3x_A 94 Q-GKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVI-----GWYKLFPPS 141 (171)
T ss_dssp T-TEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEE-----EEEECBCGG
T ss_pred C-CCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcc-----eeEECCCcc
Confidence 3 689999999 9999999999999999999998765544 999998865
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-18 Score=161.51 Aligned_cols=116 Identities=28% Similarity=0.489 Sum_probs=100.8
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccCC
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEKI 112 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~ 112 (789)
.|...+++.|. . +.|.|+|++|+||+..+..+.+||||+|++.+ .+++|+++++|.||+|||+|.|.+...
T Consensus 19 ~G~l~~~l~~~--~--~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 94 (149)
T 1a25_A 19 RGRIYIQAHID--R--EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKES 94 (149)
T ss_dssp TCEEEEEEEES--S--SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSG
T ss_pred ceEEEEEEEec--C--CEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccc
Confidence 45667777774 3 78999999999999999899999999999974 578999999999999999999998653
Q ss_pred -CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccC
Q 003882 113 -QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR 163 (789)
Q Consensus 113 -~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 163 (789)
....|.|+|||++.++++++||++.|+|.++..+. .+ .||+|.+.
T Consensus 95 ~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~-~~-----~W~~L~~~ 140 (149)
T 1a25_A 95 DKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VD-----GWFKLLSQ 140 (149)
T ss_dssp GGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTCC-EE-----EEEECBCH
T ss_pred cCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcCc-cC-----CeEEccCC
Confidence 24689999999999999999999999999998752 33 89999875
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.2e-18 Score=157.29 Aligned_cols=104 Identities=28% Similarity=0.408 Sum_probs=93.1
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccCC-
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEKI- 112 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~- 112 (789)
|...+++.|+... +.|.|+|++|+||+..+..|.+||||++++.+ .+++|+++++|.||+|||+|.|.+...
T Consensus 3 G~l~~sl~y~~~~--~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~ 80 (138)
T 3n5a_A 3 GELLLSLCYNPSA--NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEK 80 (138)
T ss_dssp CEEEEEEEEETTT--TEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGG
T ss_pred cEEEEEEEEcCCC--CeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhh
Confidence 4678899998877 99999999999999999889999999999975 478999999999999999999998543
Q ss_pred -CCceEEEEEEeCCCCCCCceeEEEEEEccccC
Q 003882 113 -QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVP 144 (789)
Q Consensus 113 -~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~ 144 (789)
....|.|+|||++.+++|++||++.|++.++.
T Consensus 81 l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 81 LRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp GGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH
T ss_pred cCceEEEEEEEECCCCCCCcEEEEEEEccccCC
Confidence 34789999999999999999999999998754
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.9e-18 Score=159.71 Aligned_cols=122 Identities=27% Similarity=0.326 Sum_probs=101.9
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccCC
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEKI 112 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~ 112 (789)
.|...+++.|.... +.|.|+|++|+||+..+..|.+||||+|++.+ .+++|+++++|.||+|||+|.|.+...
T Consensus 11 ~G~l~~~l~y~~~~--~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 88 (159)
T 1tjx_A 11 LGDICFSLRYVPTA--GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE 88 (159)
T ss_dssp CCEEEEEEEEETTT--TEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred CCeEEEEEEEcCCC--CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHH
Confidence 45788999998877 99999999999999999889999999999963 467999999999999999999998533
Q ss_pred --CCceEEEEEEeCCCCCCCceeEEEEEEcccc----------CCCCCCCCCCCCeeEEcccCC
Q 003882 113 --QSSVLEVFVRDREIVGRDDYIGKVVFDMNEV----------PTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 113 --~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l----------~~~~~~~~~~~~~w~~L~~~~ 164 (789)
....|.|+|||++.++++++||++.|++..+ .... .....+||+|....
T Consensus 89 ~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~---~~~~~~W~~L~~~~ 149 (159)
T 1tjx_A 89 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANP---RRPIAQWHTLQVEE 149 (159)
T ss_dssp GGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHST---TCCEEEEEECBCHH
T ss_pred HhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCC---CCeeeeEEECcCcc
Confidence 3568999999999999999999999999854 2111 11223899998753
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.74 E-value=9.8e-18 Score=160.60 Aligned_cols=105 Identities=24% Similarity=0.323 Sum_probs=94.4
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC-
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK- 111 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~- 111 (789)
.|...+++.|.... +.|.|+|++|+||+..+..|.+||||+|++.+ .+++|+++++|.||+|||+|.|.+..
T Consensus 23 ~G~l~~~l~y~~~~--~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 100 (166)
T 2cm5_A 23 RGKILVSLMYSTQQ--GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS 100 (166)
T ss_dssp CCEEEEEEEEETTT--TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred cceEEEEEEEECCC--CEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchH
Confidence 35678899998876 99999999999999999899999999999986 57899999999999999999999854
Q ss_pred -CCCceEEEEEEeCCCCCCCceeEEEEEEccccC
Q 003882 112 -IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVP 144 (789)
Q Consensus 112 -~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~ 144 (789)
+....|.|+|||++.++++++||++.|++..+.
T Consensus 101 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 101 DLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG 134 (166)
T ss_dssp GGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH
T ss_pred hcCCCEEEEEEEECCCCCCCcEEEeEEEecccCC
Confidence 235799999999999999999999999999753
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.74 E-value=8e-18 Score=158.95 Aligned_cols=103 Identities=31% Similarity=0.378 Sum_probs=87.2
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--Ce---eeeeccccCCCCCeeccEEEEEccCC
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLG--NY---KGKTRHFEKKSNPEWKQVFAFSKEKI 112 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~--~~---~~~T~~~~~t~nP~wne~f~f~~~~~ 112 (789)
.|...+++.|+... +.|.|+|++|+||+..+..|.+||||+|++. +. +++|+++++|.||+|||+|.|.+...
T Consensus 16 ~G~l~~~l~y~~~~--~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 93 (153)
T 1w15_A 16 RGELLVSLCYQSTT--NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCE 93 (153)
T ss_dssp CCEEEEEEEEETTT--TEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSS
T ss_pred ccEEEEEEEEcCCC--CEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHH
Confidence 46788999998877 9999999999999999988999999999994 33 67999999999999999999998543
Q ss_pred --CCceEEEEEEeCCCCCCCceeEEEEEEccc
Q 003882 113 --QSSVLEVFVRDREIVGRDDYIGKVVFDMNE 142 (789)
Q Consensus 113 --~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~ 142 (789)
....|.|+|||++.++++++||++.|++..
T Consensus 94 ~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 94 SLEEISVEFLVLDSERGSRNEVIGRLVLGATA 125 (153)
T ss_dssp SSTTEEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred HhCceEEEEEEEeCCCCCCCcEEEEEEECCCC
Confidence 357899999999999999999999999988
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=157.32 Aligned_cols=119 Identities=21% Similarity=0.292 Sum_probs=102.6
Q ss_pred cccceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE---CCE
Q 003882 340 KFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY---GLK 416 (789)
Q Consensus 340 ~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---~~~ 416 (789)
...|+|++.+.+. +..+.|.|+|++|+||+.++ ..+.+||||+|++ +.+
T Consensus 26 ~~~G~l~~~l~y~-------------------------~~~~~L~V~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~ 77 (152)
T 1rsy_A 26 EKLGKLQYSLDYD-------------------------FQNNQLLVGIIQAAELPALD---MGGTSDPYVKVFLLPDKKK 77 (152)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCCS---TTSCCCEEEEEEEETTCCS
T ss_pred CCceEEEEEEEEe-------------------------CCCCEEEEEEEEeECCCCcc---CCCCcCeEEEEEEEcCCCc
Confidence 3478988888643 23379999999999999874 4578999999999 456
Q ss_pred EEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeee
Q 003882 417 WVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLV 491 (789)
Q Consensus 417 ~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 491 (789)
.+||+++++++||+|||.|.|.+.. ....|.|+|||++.++ +|++||++.|+|.++..+.....||+|..
T Consensus 78 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~-----~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 78 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS-----KHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp CEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS-----CCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred eEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCCC-----CCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 7999999999999999999998864 3579999999999876 78999999999999998888899999963
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=159.15 Aligned_cols=124 Identities=16% Similarity=0.159 Sum_probs=102.4
Q ss_pred CccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCC
Q 003882 379 PIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGG 458 (789)
Q Consensus 379 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~ 458 (789)
..+.|+|+|++|++|+..+. .+.+||||+|+++++.+||+++++|+||+|||.|.|.+. +...|.|+|||+|.++
T Consensus 34 ~~~~L~V~V~~A~~L~~~~~---~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~~- 108 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENKKN---WFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLK- 108 (173)
T ss_dssp CCEEEEEEEEEEEECCCC-----CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSS-
T ss_pred CceEEEEEEEEeECCCCccc---CCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeC-CCCEEEEEEEECCCCC-
Confidence 45799999999999984432 234999999999999999999999999999999999985 5889999999999886
Q ss_pred CCCCCCCccEEEEEECcccccCc-----eEeeeEeeeecCCCCCccceEEEEEEEEeec
Q 003882 459 SGTKPDSRIGKVRIRLSTLEADR-----IYTHSYPLLVLNPSGVKKMGELQLAVRFTCL 512 (789)
Q Consensus 459 ~~~~~d~~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 512 (789)
.|++||++.|+|.++..+. ....|++|...+. +.+..|+|.+.+.+.+.
T Consensus 109 ----~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~-~~~~~G~L~v~l~~l~~ 162 (173)
T 2nq3_A 109 ----SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKE-PTETIGDLSICLDGLQL 162 (173)
T ss_dssp ----CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSC-TTSEEEEEEEEEESEEC
T ss_pred ----CCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCC-CCcccEEEEEEEeeeec
Confidence 8899999999999987431 2367999986532 33457999999887643
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-17 Score=152.48 Aligned_cols=120 Identities=25% Similarity=0.320 Sum_probs=102.8
Q ss_pred cccceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC---CE
Q 003882 340 KFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG---LK 416 (789)
Q Consensus 340 ~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~---~~ 416 (789)
...|+|.+.+.+. +..+.|.|+|++|+||+.++ ..+.+||||++++. .+
T Consensus 10 ~~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~ 61 (141)
T 2d8k_A 10 ENLGRIQFSVGYN-------------------------FQESTLTVKIMKAQELPAKD---FSGTSDPFVKIYLLPDKKH 61 (141)
T ss_dssp CCCCEEEEEEEEC-------------------------SSSCCEEEEEEEEESCCCCS---SSSCCCEEEEEEEESCCSS
T ss_pred ceeeEEEEEEEEe-------------------------CCCCEEEEEEEEeECCCCCC---CCCCCCcEEEEEEECCCCc
Confidence 3579998888653 23479999999999999874 35789999999993 46
Q ss_pred EEeeccccCCCCCccccEEEEEEeC----CCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeec
Q 003882 417 WVRTRTLVDNFNPKWNEQYTWEVYD----PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVL 492 (789)
Q Consensus 417 ~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 492 (789)
.+||+++++++||+|||.|.|.+.. ....|.|+|||++.++ +|++||++.|+|.++..+.....||+|...
T Consensus 62 ~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~-----~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 136 (141)
T 2d8k_A 62 KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFS-----RNDPIGEVSIPLNKVDLTQMQTFWKDLKPS 136 (141)
T ss_dssp EEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSS-----SCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred cEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCCC-----CCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence 8999999999999999999998642 3578999999999876 789999999999999988888999999754
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-17 Score=152.01 Aligned_cols=123 Identities=20% Similarity=0.252 Sum_probs=98.1
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC--EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL--KWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGG 458 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~--~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~ 458 (789)
..|+|+|++|++|+++| ..|.+||||++.+++ +.++|+++++|+||+|||.|.|.+..+. .|.|+|||++.++
T Consensus 5 ~~L~V~v~~a~~L~~~d---~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~- 79 (132)
T 3pyc_A 5 IKIRLTVLCAKNLAKKD---FFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIH- 79 (132)
T ss_dssp EEEEEEEEEEESCCCCS---TTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTT-
T ss_pred EEEEEEEEEeECCCCCC---CCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCC-
Confidence 58999999999999874 457899999999964 7899999999999999999999998754 4999999999874
Q ss_pred CCCCCCCccEEEEEECcccc-cCceEeeeEeeeecCCC-CCccceEEEEEEEE
Q 003882 459 SGTKPDSRIGKVRIRLSTLE-ADRIYTHSYPLLVLNPS-GVKKMGELQLAVRF 509 (789)
Q Consensus 459 ~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~-g~~~~G~i~l~~~f 509 (789)
....|++||.+.|++.++. .......|++|....+. ..+..|+|++++..
T Consensus 80 -~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 80 -KKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp -SSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred -CCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 0112799999999999983 23333578998764322 22347999998764
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.8e-18 Score=158.43 Aligned_cols=122 Identities=18% Similarity=0.276 Sum_probs=103.3
Q ss_pred cccceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC-----
Q 003882 340 KFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG----- 414 (789)
Q Consensus 340 ~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~----- 414 (789)
...|+|.+.+.+. +..|.|.|+|++|+||+.++. ..+.+||||++.++
T Consensus 7 ~~~G~l~~sl~y~-------------------------~~~~~L~V~v~~a~~L~~~d~--~~~~~dpyv~v~l~~~~~~ 59 (148)
T 3fdw_A 7 FVTGRIAFSLKYE-------------------------QQTQSLVVHVKECHQLAYADE--AKKRSNPYVKTYLLPDKSR 59 (148)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCSBT--TTTBCCEEEEEEEETCCSG
T ss_pred ccceEEEEEEEEe-------------------------CCCCEEEEEEEEecCCCCccc--CCCCCCeEEEEEEEcCCcc
Confidence 4579999988753 234799999999999998752 35789999999995
Q ss_pred CEEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeee
Q 003882 415 LKWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLV 491 (789)
Q Consensus 415 ~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 491 (789)
...++|+++++|+||+|||.|.|.+... ...|.|+|||+|.++ +|++||++.|+|.++..++....||+|..
T Consensus 60 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~-----~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 134 (148)
T 3fdw_A 60 QGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFG-----RNTFLGEAEIQMDSWKLDKKLDHCLPLHG 134 (148)
T ss_dssp GGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGG-----CEEEEEEEEEEHHHHHHHCCSEEEEECBC
T ss_pred cCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCc-----CCcEEEEEEEEcccccccCCccceEECcC
Confidence 3479999999999999999999998753 457999999999876 78999999999999988777789999975
Q ss_pred cC
Q 003882 492 LN 493 (789)
Q Consensus 492 ~~ 493 (789)
+.
T Consensus 135 ~~ 136 (148)
T 3fdw_A 135 KI 136 (148)
T ss_dssp C-
T ss_pred cc
Confidence 43
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=157.25 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=90.5
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC------EEEeeccccCCCCCccccEEEEEEeCC---CceEEEEE
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL------KWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGV 450 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v 450 (789)
.+.|+|.|++|+||++++ ..|.+||||++++.+ .++||+++++|+||+|||.|.|.+... ...|.|+|
T Consensus 42 ~~~L~V~Vi~a~~L~~~d---~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V 118 (155)
T 2z0u_A 42 NKQFAILIIQLSNLSALL---QQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDV 118 (155)
T ss_dssp TTEEEEEEEEEECGGGTC---CSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEE
T ss_pred CCEEEEEEEEccCcCCcc---cCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEE
Confidence 479999999999999884 468899999999954 279999999999999999999998752 56899999
Q ss_pred EeCCCCCCCCCCCCCccEEEEEECcccc-cCceEeeeEeee
Q 003882 451 FDNCHLGGSGTKPDSRIGKVRIRLSTLE-ADRIYTHSYPLL 490 (789)
Q Consensus 451 ~d~~~~~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~ 490 (789)
||+|.++ ++++||.+.|+|.++. .+....+||+|.
T Consensus 119 ~d~d~~~-----~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 119 CTTDRSH-----LEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp EEECTTS-----CEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred EECCCCC-----CCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 9999986 8899999999999996 366778999985
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-17 Score=154.05 Aligned_cols=119 Identities=21% Similarity=0.314 Sum_probs=103.0
Q ss_pred ccccceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE---CC
Q 003882 339 LKFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY---GL 415 (789)
Q Consensus 339 ~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---~~ 415 (789)
....|+|.+.+.+. +..+.|.|+|++|+||+.++. .+.+||||++.+ +.
T Consensus 17 ~~~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~d~---~g~~dpyv~v~l~~~~~ 68 (143)
T 3f04_A 17 VEKLGKLQYSLDYD-------------------------FQNNQLLVGIIQAAELPALDM---GGTSDPYVKVFLLPDKK 68 (143)
T ss_dssp CCCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEECCCCBGG---GBCCCEEEEEEEESCCS
T ss_pred ccCeEEEEEEEEEe-------------------------CCCCEEEEEEEEecCCCCCCC---CCCcCcEEEEEEECCCC
Confidence 34578998888653 234799999999999998754 478999999999 55
Q ss_pred EEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 416 KWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 416 ~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
+.++|+++++|+||+|||.|.|.+... ...|.|+|||++.++ +|++||++.|+|.++..+.....||+|.
T Consensus 69 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~-----~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 141 (143)
T 3f04_A 69 KKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS-----KHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS-----CCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred ccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCC-----CCceEEEEEEEHHHccCCCCcceEEECc
Confidence 689999999999999999999998742 479999999999976 8899999999999999988889999995
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=150.75 Aligned_cols=101 Identities=23% Similarity=0.364 Sum_probs=84.7
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE-----CCEEEeeccccCCCCCccccEEEEEEeC----CCceEEEEE
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-----GLKWVRTRTLVDNFNPKWNEQYTWEVYD----PCTVITLGV 450 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~v 450 (789)
.|.|.|+|++|+||+.++ ..|.+||||++.+ +.+..+|+++++|+||+|||.|.|.+.. ....|.|+|
T Consensus 17 ~~~L~v~v~~a~~L~~~d---~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V 93 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSRE---DGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITL 93 (129)
T ss_dssp TTEEEEEEEEEESCCCCT---TSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEE
T ss_pred CCEEEEEEEEeeCCCCCC---CCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEE
Confidence 379999999999999874 4578999999999 4678999999999999999999999642 256999999
Q ss_pred EeCCCCCCCCCCC--CCccEEEEEECcccccCceEeeeEee
Q 003882 451 FDNCHLGGSGTKP--DSRIGKVRIRLSTLEADRIYTHSYPL 489 (789)
Q Consensus 451 ~d~~~~~~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~L 489 (789)
||++..+ . +++||++.|+|.++.... ...||+|
T Consensus 94 ~d~d~~~-----~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 94 WDQARVR-----EEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp EEC------------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred EECCcCc-----CcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 9999874 4 899999999999987655 7899998
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.6e-17 Score=150.45 Aligned_cols=103 Identities=16% Similarity=0.222 Sum_probs=91.2
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE-----CCEEEeeccccCCCCCccccEEEEE-EeC---CCceEEEEE
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-----GLKWVRTRTLVDNFNPKWNEQYTWE-VYD---PCTVITLGV 450 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~f~-v~~---~~~~l~v~v 450 (789)
.|.|.|+|++|+||+. + ..|.+||||+|++ +....||+++++|+||+|||.|.|. +.. ....|.|+|
T Consensus 19 ~~~L~V~V~~a~~L~~-~---~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V 94 (134)
T 2b3r_A 19 NGTLFIMVMHIKDLVT-E---DGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSV 94 (134)
T ss_dssp TTEEEEEEEEEECCCC-T---TSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEE
T ss_pred CCEEEEEEEEeeCCCC-C---CCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEE
Confidence 3799999999999985 3 3578999999999 4567999999999999999999999 763 357999999
Q ss_pred EeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeee
Q 003882 451 FDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLV 491 (789)
Q Consensus 451 ~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 491 (789)
||++.++ ++++||++.|+|.++..++....||+|..
T Consensus 95 ~d~d~~~-----~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 130 (134)
T 2b3r_A 95 LSAESLR-----ENFFLGGITLPLKDFNLSKETVKWYQLTA 130 (134)
T ss_dssp EECCSSS-----CCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred EECCCCC-----CCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence 9999886 78999999999999998888899999974
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-17 Score=152.75 Aligned_cols=121 Identities=19% Similarity=0.326 Sum_probs=100.3
Q ss_pred cccceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE-----C
Q 003882 340 KFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-----G 414 (789)
Q Consensus 340 ~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-----~ 414 (789)
...|+|.+.+.+.. ..+.|.|+|++|+||+.++ ..+.+||||++++ +
T Consensus 5 ~~~G~i~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~ 56 (141)
T 1v27_A 5 SSGGQLSIKLWFDK-------------------------VGHQLIVTILGAKDLPSRE---DGRPRNPYVKIYFLPDRSD 56 (141)
T ss_dssp CCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCS---SSCCCCEEEECCCSSCCSS
T ss_pred CcccEEEEEEEEeC-------------------------CCCEEEEEEEEccCCCCcC---CCCCCCCEEEEEEecCCCC
Confidence 45799999987532 2379999999999999874 4578999999998 4
Q ss_pred CEEEeeccccCCCCCccccEEEEEEeC----CCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 415 LKWVRTRTLVDNFNPKWNEQYTWEVYD----PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 415 ~~~~~T~~~~~t~~P~wne~~~f~v~~----~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
.+.+||+++++|+||+|||.|.|.+.. ....|.|+|||++.++ ...+++||++.|+|.++.... ...||+|.
T Consensus 57 ~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~---~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~ 132 (141)
T 1v27_A 57 KNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVR---EEESEFLGEILIELETALLDD-EPHWYKLQ 132 (141)
T ss_dssp SSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSS---SCCBCCCEEEEEEGGGCCCSS-EEEEEECB
T ss_pred CcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCc---CCCCceEEEEEEEccccCCCC-CCceEECc
Confidence 578999999999999999999999542 2479999999999875 012899999999999987655 78999997
Q ss_pred ec
Q 003882 491 VL 492 (789)
Q Consensus 491 ~~ 492 (789)
..
T Consensus 133 ~~ 134 (141)
T 1v27_A 133 TH 134 (141)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-17 Score=152.07 Aligned_cols=121 Identities=19% Similarity=0.242 Sum_probs=99.7
Q ss_pred cccceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC----
Q 003882 340 KFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL---- 415 (789)
Q Consensus 340 ~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~---- 415 (789)
...|+|.+.+.+. +..+.|.|.|++|+||+.++. .| +||||+|++.+
T Consensus 8 ~~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~d~---~g-~dpyv~v~l~~~~~~ 58 (142)
T 2dmg_A 8 SPLGQIQLTIRHS-------------------------SQRNKLIVVVHACRNLIAFSE---DG-SDPYVRMYLLPDKRR 58 (142)
T ss_dssp CSSCEEEEEEEEE-------------------------TTTTEEEEEEEEEECCCCSST---TC-CCEEEEEEEESCCCS
T ss_pred CCcceEEEEEEEe-------------------------CCCCEEEEEEEEeECCCCCCC---CC-CCeeEEEEEEcCCCC
Confidence 4579999988753 223799999999999998854 46 99999999932
Q ss_pred -EEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeee
Q 003882 416 -KWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLV 491 (789)
Q Consensus 416 -~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 491 (789)
..++|+++++|+||+|||.|.|.+... ...|.|+|||++.++ ...|++||++.|+|.++..+.....||+|..
T Consensus 59 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~---~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~ 135 (142)
T 2dmg_A 59 SGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFL---SKDKGLLGKVLVALASEELAKGWTQWYDLTE 135 (142)
T ss_dssp SSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSS---CCSCCCCEEEEEECCCSTTTTCBCCBCCCBC
T ss_pred CCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCcc---ccCCcEEEEEEEecccccccccccceeeccC
Confidence 579999999999999999999998642 458999999999864 1125799999999999988777899999974
Q ss_pred c
Q 003882 492 L 492 (789)
Q Consensus 492 ~ 492 (789)
.
T Consensus 136 ~ 136 (142)
T 2dmg_A 136 D 136 (142)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.4e-17 Score=153.73 Aligned_cols=120 Identities=23% Similarity=0.345 Sum_probs=98.9
Q ss_pred ccccceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE-----
Q 003882 339 LKFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY----- 413 (789)
Q Consensus 339 ~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~----- 413 (789)
....|++.+++++. +..|.|.|+|++|+||+.++ .|.+||||++.+
T Consensus 10 ~~~~G~~~lsL~y~-------------------------~~~~~L~V~v~~a~~L~~~d----~g~~Dpyv~v~l~~~~~ 60 (153)
T 3fbk_A 10 HKVQGAGQLRLSID-------------------------AQDRVLLLHIIEGKGLISKQ----PGTCDPYVKISLIPEDS 60 (153)
T ss_dssp ---CCCCEEEEEEE-------------------------ESSSEEEEEEEEEESCCCCS----SSCCCEEEEEEEESCSC
T ss_pred cCCCCEEEEEEEEE-------------------------CCCCEEEEEEEEeeCCCCCC----CCCCCEEEEEEEEcCCC
Confidence 34578888888753 23379999999999999874 378999999998
Q ss_pred CCEEEeeccccCCCCCccccEEEEEEe--CCCceEEEEEEeCCCCCCCCCCC-CCccEEEEEECccccc-CceEeeeEee
Q 003882 414 GLKWVRTRTLVDNFNPKWNEQYTWEVY--DPCTVITLGVFDNCHLGGSGTKP-DSRIGKVRIRLSTLEA-DRIYTHSYPL 489 (789)
Q Consensus 414 ~~~~~~T~~~~~t~~P~wne~~~f~v~--~~~~~l~v~v~d~~~~~~~~~~~-d~~lG~~~i~l~~l~~-~~~~~~~~~L 489 (789)
..+..+|+++++|+||+|||.|.|.+. +....|.|+|||++.++ . |++||++.|+|.++.. +.....||+|
T Consensus 61 ~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~~~-----~~d~~lG~~~i~l~~l~~~~~~~~~W~~L 135 (153)
T 3fbk_A 61 RLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQS-----RQSGLIGCMSFGVKSLLTPDKEISGWYYL 135 (153)
T ss_dssp CTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECCSSG-----GGCEEEEEEEEEHHHHTC--CCEEEEEEC
T ss_pred CccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCCCCC-----CCCcEEEEEEEEHHHhcCCCCccccEEEC
Confidence 335699999999999999999999994 44567999999999875 5 8999999999999985 7788999999
Q ss_pred eec
Q 003882 490 LVL 492 (789)
Q Consensus 490 ~~~ 492 (789)
...
T Consensus 136 ~~~ 138 (153)
T 3fbk_A 136 LGE 138 (153)
T ss_dssp BCT
T ss_pred CCh
Confidence 754
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=147.70 Aligned_cols=121 Identities=20% Similarity=0.219 Sum_probs=99.0
Q ss_pred cccceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC---CE
Q 003882 340 KFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG---LK 416 (789)
Q Consensus 340 ~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~---~~ 416 (789)
...|+|.+.+.... ..+.|.|+|++|+||+.++.. .+.+||||++.+. .+
T Consensus 6 ~~~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d~~--~~~~dpyv~v~~~~~~~~ 58 (138)
T 1ugk_A 6 SGLGTLFFSLEYNF-------------------------ERKAFVVNIKEARGLPAMDEQ--SMTSDPYIKMTILPEKKH 58 (138)
T ss_dssp CCCCEEEEEEEEEG-------------------------GGTEEEEEEEEEESCCCCBTT--TTBCEEEEEEEEETTTCS
T ss_pred CccEEEEEEEEEEC-------------------------CCCEEEEEEEEeeCCCCCCCC--CCCCCCEEEEEEecCCCc
Confidence 34799998887532 236999999999999987531 3789999999995 37
Q ss_pred EEeeccccCCCCCccccEEEEE-EeC---CCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCc-eEeeeEeeee
Q 003882 417 WVRTRTLVDNFNPKWNEQYTWE-VYD---PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADR-IYTHSYPLLV 491 (789)
Q Consensus 417 ~~~T~~~~~t~~P~wne~~~f~-v~~---~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~ 491 (789)
.+||+++++|+||+|||.|.|. +.. ....|.|+|||++.++ +|++||++.|+|.++..+. ....|++|..
T Consensus 59 ~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~-----~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~ 133 (138)
T 1ugk_A 59 KVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFS-----RDDIIGEVLIPLSGIELSEGKMLMNREIIS 133 (138)
T ss_dssp EEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSC-----CCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred eEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCC-----CCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence 8999999999999999999996 653 2469999999999876 8899999999999998754 4466788864
Q ss_pred c
Q 003882 492 L 492 (789)
Q Consensus 492 ~ 492 (789)
.
T Consensus 134 ~ 134 (138)
T 1ugk_A 134 G 134 (138)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=147.57 Aligned_cols=117 Identities=15% Similarity=0.120 Sum_probs=98.1
Q ss_pred ccccceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC---C
Q 003882 339 LKFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG---L 415 (789)
Q Consensus 339 ~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~---~ 415 (789)
....|+|++.+.+.. ..+.|.|+|++|++ + +..|.+||||+|.+. +
T Consensus 9 ~~~~G~l~~sl~y~~-------------------------~~~~L~V~v~~a~~---~---d~~g~sDPyv~v~l~~~~~ 57 (138)
T 1wfm_A 9 WNQAPKLHYCLDYDC-------------------------QKAELFVTRLEAVT---S---NHDGGCDCYVQGSVANRTG 57 (138)
T ss_dssp CSSCCEEEEEEEEET-------------------------TTTEEEEEEEEEEC---C---CCSSCCCEEEEEEEEETTE
T ss_pred CCcceEEEEEEEEeC-------------------------CCCEEEEEEEEEEc---C---CCCCCcceEEEEEEEcCCC
Confidence 345799999887532 23699999999994 3 456899999999993 2
Q ss_pred -EEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeee
Q 003882 416 -KWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLV 491 (789)
Q Consensus 416 -~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 491 (789)
.+++|+++++|+||+|||.|.|.+... ...|.|+|||+|.++ +|++||++.|+|.++..+.....|++|..
T Consensus 58 ~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~-----~dd~lG~~~i~l~~l~~~~~~~~W~~L~~ 132 (138)
T 1wfm_A 58 SVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFS-----RHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp EEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSC-----TTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred cccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCCC-----CCcEEEEEEEEcccccCcccccceeeCcC
Confidence 368999999999999999999998753 568999999999986 89999999999999987677789999974
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=150.60 Aligned_cols=103 Identities=22% Similarity=0.367 Sum_probs=90.9
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC-----CEEEeeccccCCCCCccccEEEEEEeCC--CceEEEEEEeC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG-----LKWVRTRTLVDNFNPKWNEQYTWEVYDP--CTVITLGVFDN 453 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~t~~P~wne~~~f~v~~~--~~~l~v~v~d~ 453 (789)
|.|.|+|++|+||+.++ ..+.+||||+|+++ ...+||+++++++||+|||.|.|.+... ...|.|+|||+
T Consensus 31 ~~L~v~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~ 107 (149)
T 1a25_A 31 EVLIVVVRDAKNLVPMD---PNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDW 107 (149)
T ss_dssp SEEEEEEEEEESCCCCS---TTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred CEEEEEEEEeeCCCCCC---CCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEEC
Confidence 58999999999999874 45789999999996 4679999999999999999999999753 46899999999
Q ss_pred CCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeec
Q 003882 454 CHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVL 492 (789)
Q Consensus 454 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 492 (789)
+.++ +|++||.+.|+|.++..+ ....||+|...
T Consensus 108 d~~~-----~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~ 140 (149)
T 1a25_A 108 DLTS-----RNDFMGSLSFGISELQKA-GVDGWFKLLSQ 140 (149)
T ss_dssp CSSS-----CCEEEEEEEEEHHHHTTC-CEEEEEECBCH
T ss_pred CCCC-----CCCEEEEEEEEHHHhCcC-ccCCeEEccCC
Confidence 9976 789999999999999876 47899999743
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.5e-17 Score=155.97 Aligned_cols=105 Identities=19% Similarity=0.263 Sum_probs=92.2
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCCCceEEEEEE-eCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVF-DNC 454 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~-d~~ 454 (789)
|.|.|+|++|+||+.+|. ..|.+||||+|.+.+ ..+||+++++|+||+|||.|.|.+......|.|+|| |+|
T Consensus 30 ~~L~V~v~~a~~L~~~d~--~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d 107 (171)
T 2q3x_A 30 GQLEVEVIRARSLTQKPG--SKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYG 107 (171)
T ss_dssp TEEEEEEEEEESCCCCC-----CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECS
T ss_pred CEEEEEEEEeeCCCCCCc--CCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCC
Confidence 699999999999998742 247899999999843 379999999999999999999998766789999999 999
Q ss_pred CCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeec
Q 003882 455 HLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVL 492 (789)
Q Consensus 455 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 492 (789)
.++ +|++||.+.|+|.++..++....||+|...
T Consensus 108 ~~~-----~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 108 RMD-----HKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp TTC-----SSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCC-----CCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 876 789999999999999988888999999754
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-17 Score=153.96 Aligned_cols=104 Identities=24% Similarity=0.351 Sum_probs=90.7
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE--------------EEeeccccCCCCCccccEEEEE-EeC---C
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK--------------WVRTRTLVDNFNPKWNEQYTWE-VYD---P 442 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~--------------~~~T~~~~~t~~P~wne~~~f~-v~~---~ 442 (789)
|.|.|+|++|+||+.++ ..|.+||||++.+++. .+||+++++|+||+|||.|.|. +.. .
T Consensus 18 ~~L~V~v~~a~~L~~~d---~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~ 94 (142)
T 1rh8_A 18 GNLIIHILQARNLVPRD---NNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLM 94 (142)
T ss_dssp TEEEEEEEEEESCCCCS---SSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHT
T ss_pred CEEEEEEEEecCCCCCC---CCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHcc
Confidence 69999999999999874 4588999999999652 5899999999999999999997 542 3
Q ss_pred CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeec
Q 003882 443 CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVL 492 (789)
Q Consensus 443 ~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 492 (789)
...|.|+|||+|.++ +|++||.+.|+|.++..+.....||+|...
T Consensus 95 ~~~l~i~V~d~d~~~-----~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~ 139 (142)
T 1rh8_A 95 KKTLEVTVWDYDRFS-----SNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp TCEEEEEEEEECSSS-----CEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred CCEEEEEEEECCCCC-----CCceEEEEEEeccccccCCCCCeEEECCcc
Confidence 679999999999876 789999999999999877777899999743
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.69 E-value=9.2e-17 Score=149.57 Aligned_cols=119 Identities=24% Similarity=0.385 Sum_probs=100.0
Q ss_pred ccccceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC---
Q 003882 339 LKFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL--- 415 (789)
Q Consensus 339 ~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~--- 415 (789)
....|+|.+.+.+.. ..+.|.|+|++|+||+.++ ..|.+||||++++++
T Consensus 12 ~~~~G~l~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~ 63 (142)
T 2chd_A 12 ATTLGALEFSLLYDQ-------------------------DNSNLQCTIIRAKGLKPMD---SNGLADPYVKLHLLPGAS 63 (142)
T ss_dssp --CCCEEEEEEEEEG-------------------------GGTEEEEEEEEEESCCCCC---TTSCCCEEEEEEEESCCS
T ss_pred CCccceEEEEEEEeC-------------------------CCCEEEEEEEEecCCCCCC---CCCCCCCEEEEEEEcCCC
Confidence 345789988887532 2379999999999999874 457899999999965
Q ss_pred --EEEeeccccCCCCCccccEEEEE-EeCC---CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEee
Q 003882 416 --KWVRTRTLVDNFNPKWNEQYTWE-VYDP---CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489 (789)
Q Consensus 416 --~~~~T~~~~~t~~P~wne~~~f~-v~~~---~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 489 (789)
..+||+++++++||+|||.|.|. +... ...|.|+|||++.++ +|++||++.|+|.++..++....|++|
T Consensus 64 ~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~-----~d~~iG~~~i~l~~l~~~~~~~~~~~L 138 (142)
T 2chd_A 64 KSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFG-----HNEFIGETRFSLKKLKANQRKNFNICL 138 (142)
T ss_dssp GGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTS-----CEEEEEEEEEEGGGCCTTCCEEEEEEC
T ss_pred CcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCC-----CCcEEEEEEEEHHHcCCCCccEEEEec
Confidence 78999999999999999999998 5432 368999999999876 789999999999999988887888888
Q ss_pred e
Q 003882 490 L 490 (789)
Q Consensus 490 ~ 490 (789)
.
T Consensus 139 ~ 139 (142)
T 2chd_A 139 E 139 (142)
T ss_dssp B
T ss_pred c
Confidence 5
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-16 Score=150.17 Aligned_cols=119 Identities=25% Similarity=0.286 Sum_probs=98.9
Q ss_pred cccceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC--C--
Q 003882 340 KFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG--L-- 415 (789)
Q Consensus 340 ~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~--~-- 415 (789)
...|+|.+.+.+. +..|.|.|+|++|+||+.++ ..|.+||||+|+++ +
T Consensus 9 ~~~G~l~~~l~y~-------------------------~~~~~L~V~v~~a~~L~~~d---~~g~~dpyv~v~l~~~~~~ 60 (159)
T 1tjx_A 9 EKLGDICFSLRYV-------------------------PTAGKLTVVILEAKNLKKMD---VGGLSDPYVKIHLMQNGKR 60 (159)
T ss_dssp GCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCCS---TTSCCCEEEEEEEEETTEE
T ss_pred CcCCeEEEEEEEc-------------------------CCCCEEEEEEEEeeCCCCcc---CCCCCCeEEEEEEEeCCce
Confidence 4589999998753 33479999999999999874 45789999999994 2
Q ss_pred -EEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCCCCccEEEEEECccc------------cc
Q 003882 416 -KWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTL------------EA 479 (789)
Q Consensus 416 -~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l------------~~ 479 (789)
+.++|+++++|+||+|||.|.|.+... ...|.|+|||++.++ .|++||.+.|++..+ ..
T Consensus 61 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~-----~~~~iG~~~i~l~~~~~~~~~w~~l~~~~ 135 (159)
T 1tjx_A 61 LKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG-----KNDAIGKVFVGYNSTGAELRHWSDMLANP 135 (159)
T ss_dssp EEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSS-----CCEEEEEEEEETTCCHHHHHHHHHHHHST
T ss_pred eceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCC-----CCceEEEEEECCCCCCcHHHHHHHHHHCC
Confidence 468999999999999999999998753 458999999999976 899999999999953 23
Q ss_pred CceEeeeEeeee
Q 003882 480 DRIYTHSYPLLV 491 (789)
Q Consensus 480 ~~~~~~~~~L~~ 491 (789)
++....||+|..
T Consensus 136 ~~~~~~W~~L~~ 147 (159)
T 1tjx_A 136 RRPIAQWHTLQV 147 (159)
T ss_dssp TCCEEEEEECBC
T ss_pred CCeeeeEEECcC
Confidence 456788999864
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.7e-17 Score=150.36 Aligned_cols=123 Identities=18% Similarity=0.155 Sum_probs=101.3
Q ss_pred cccceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCC-ccC---CCCCCcCcEEEEEEC-
Q 003882 340 KFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPM-KTR---DGRGTTDAYCVAKYG- 414 (789)
Q Consensus 340 ~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~-~~~---~~~~~~dpyv~v~~~- 414 (789)
...|+|.+.+.+. +..|.|.|+|++|+||+.. +.. +..+.+||||+|++.
T Consensus 10 ~~~G~l~~~l~y~-------------------------~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~ 64 (147)
T 2enp_A 10 YQLGMLHFSTQYD-------------------------LLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLP 64 (147)
T ss_dssp CCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEET
T ss_pred CcceEEEEEEEEc-------------------------CCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEe
Confidence 4589999988753 2347999999999999983 321 123589999999995
Q ss_pred --CEEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEee
Q 003882 415 --LKWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489 (789)
Q Consensus 415 --~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 489 (789)
.+.+||+++++++||+|||.|.|.+... ...|.|+|||++.++ ++++||++.|+|.++..+.....|++|
T Consensus 65 ~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~-----~~~~iG~~~i~l~~l~~~~~~~~w~~L 139 (147)
T 2enp_A 65 DQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFS-----RHCVIGKVSVPLCEVDLVKGGHWWKAL 139 (147)
T ss_dssp CCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTC-----CSCCCEEEEEETTTSCTTTCCCEEECC
T ss_pred CCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCc-----CCcEEEEEEEechhcCCCCCccEEEEe
Confidence 4679999999999999999999998642 458999999999876 788999999999999877666889999
Q ss_pred eec
Q 003882 490 LVL 492 (789)
Q Consensus 490 ~~~ 492 (789)
...
T Consensus 140 ~~~ 142 (147)
T 2enp_A 140 IPS 142 (147)
T ss_dssp BCC
T ss_pred ecC
Confidence 743
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-16 Score=146.36 Aligned_cols=101 Identities=25% Similarity=0.354 Sum_probs=84.6
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-----EEEeeccccCCCCCccccEEEEEEeCCC---ceEEEEEE
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQYTWEVYDPC---TVITLGVF 451 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t~~P~wne~~~f~v~~~~---~~l~v~v~ 451 (789)
.|.|.|+|++|+||+.++. .|.+||||++++++ ...+|++++++.||+|||.|.|.+.... ..|.|+||
T Consensus 15 ~~~L~v~v~~a~~L~~~d~---~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~ 91 (138)
T 3n5a_A 15 ANSIIVNIIKARNLKAMDI---GGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVM 91 (138)
T ss_dssp TTEEEEEEEEEESCCCCBT---TTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEE
T ss_pred CCeEEEEEEEeeCCCCcCC---CCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEE
Confidence 4799999999999998743 57899999999953 4799999999999999999999987543 68999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
|++.++ +|++||++.|++.++..+ ..+|++|.
T Consensus 92 d~~~~~-----~~~~lG~~~i~l~~~~~~--~~~W~~l~ 123 (138)
T 3n5a_A 92 DKDKLS-----RNDVIGKIYLSWKSGPGE--VKHWKDMI 123 (138)
T ss_dssp ECCSSS-----CCEEEEEEEESSSSCHHH--HHHHHHHH
T ss_pred ECCCCC-----CCcEEEEEEEccccCChH--HHHHHHHH
Confidence 999876 889999999999986422 24555554
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.68 E-value=4.1e-16 Score=149.25 Aligned_cols=107 Identities=19% Similarity=0.292 Sum_probs=91.8
Q ss_pred ccccceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC---
Q 003882 339 LKFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL--- 415 (789)
Q Consensus 339 ~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~--- 415 (789)
....|+|.+.+.+. +..|.|.|.|++|+||+.++ ..|.+||||+|++++
T Consensus 20 ~~~~G~l~~~l~y~-------------------------~~~~~L~V~v~~a~~L~~~d---~~g~~DPyv~v~l~~~~~ 71 (166)
T 2cm5_A 20 IEERGKILVSLMYS-------------------------TQQGGLIVGIIRCVHLAAMD---ANGYSDPFVKLWLKPDMG 71 (166)
T ss_dssp CCCCCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCCCCS---TTSCCCEEEEEEEETC--
T ss_pred cCccceEEEEEEEE-------------------------CCCCEEEEEEEEeECCCCcc---CCCCCCcEEEEEEECCCC
Confidence 45679999988753 23479999999999999874 357899999999965
Q ss_pred --EEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccc
Q 003882 416 --KWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLE 478 (789)
Q Consensus 416 --~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~ 478 (789)
..++|+++++|+||+|||.|.|.+... ...|.|+|||++.++ +|++||.+.|++.++.
T Consensus 72 ~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~-----~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 72 KKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGK-----SNDYIGGCQLGISAKG 134 (166)
T ss_dssp -CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSS-----CCEEEEEEEEETTCCH
T ss_pred ccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCCCC-----CCcEEEeEEEecccCC
Confidence 679999999999999999999999752 459999999999876 7899999999999864
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-16 Score=140.65 Aligned_cols=118 Identities=17% Similarity=0.220 Sum_probs=103.3
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeecccc-CCCCCeeccEEEEEccCC--CCceEEEEEEeCCCCCCC
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFE-KKSNPEWKQVFAFSKEKI--QSSVLEVFVRDREIVGRD 130 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~-~t~nP~wne~f~f~~~~~--~~~~l~v~V~d~~~~~~d 130 (789)
-.|+|+|.+|.+|+ |++|||+++.+.+.+++|++++ ++.||+|||.|.|++..+ .+..|.|.|+|++.++++
T Consensus 21 msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~n 95 (144)
T 3l9b_A 21 MALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSN 95 (144)
T ss_dssp EEEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCC
T ss_pred EEEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCC
Confidence 35999999999998 4789999999999999999998 699999999999998543 478999999999999999
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeec
Q 003882 131 DYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQ 182 (789)
Q Consensus 131 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 182 (789)
++||++.++|+++....... .+-+|.+.+.. ...++|.+++.|.+.
T Consensus 96 rlIG~~~i~Lq~lv~~~~l~-----l~~~LvD~n~~-~~~a~I~l~l~Y~pp 141 (144)
T 3l9b_A 96 KLIGTFRMVLQKVVEENRVE-----VSDTLIDDNNA-IIKTSLSMEVRYQAA 141 (144)
T ss_dssp EEEEEEEEESHHHHHHSEEE-----EEEEEECTTSC-EEEEEEEEEEEEEET
T ss_pred CEEEEEEEEhHHhccCCeEE-----EeecccCCCCC-ccccEEEEEEEecCC
Confidence 99999999999999876443 56788887765 456899999999864
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-16 Score=144.83 Aligned_cols=88 Identities=25% Similarity=0.343 Sum_probs=74.7
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeecccc-CCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCc
Q 003882 53 MFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFE-KKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDD 131 (789)
Q Consensus 53 ~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~-~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~ 131 (789)
++.|.|+|++|++|+. .|.+||||+++ .+..+|+++. +|.||+|||+|.|.+... ...|.|+|||+| +++|+
T Consensus 4 ~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~~~dd 76 (131)
T 2cjt_A 4 MSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-LIWDT 76 (131)
T ss_dssp CEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCC-SSEEEEEEEECC-SSCEE
T ss_pred ceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCC-CCeEEEEEEECC-CCCCC
Confidence 5899999999999853 67899999999 3344555554 799999999999999765 468999999999 88999
Q ss_pred eeEEEEEEccccCCCC
Q 003882 132 YIGKVVFDMNEVPTRV 147 (789)
Q Consensus 132 ~lG~~~i~l~~l~~~~ 147 (789)
+||++.|+|.++....
T Consensus 77 ~iG~~~i~l~~l~~~~ 92 (131)
T 2cjt_A 77 MVGTVWIPLRTIRQSN 92 (131)
T ss_dssp EEEEEEEEGGGSCBCS
T ss_pred eEEEEEEEHHHhhhcC
Confidence 9999999999987653
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=144.08 Aligned_cols=117 Identities=16% Similarity=0.159 Sum_probs=90.9
Q ss_pred cccceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE--CCE-
Q 003882 340 KFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY--GLK- 416 (789)
Q Consensus 340 ~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~~- 416 (789)
...|+|.+.+.+. +..+.|.|+|++|+||+.++ ..|.+||||+|.+ ++.
T Consensus 14 ~~~G~l~~~l~y~-------------------------~~~~~L~v~v~~a~~L~~~d---~~g~~dpyv~v~~~~~~~~ 65 (153)
T 1w15_A 14 SGRGELLVSLCYQ-------------------------STTNTLTVVVLKARHLPKSD---VSGLSDPYVKVNLYHAKKR 65 (153)
T ss_dssp --CCEEEEEEEEE-------------------------TTTTEEEEEEEEEESCC---------CCCEEEEEEEEETTEE
T ss_pred ccccEEEEEEEEc-------------------------CCCCEEEEEEEEeECCCCcC---CCCCCCeEEEEEEEeCCeE
Confidence 4578998888653 23479999999999999874 3578999999999 443
Q ss_pred --EEeeccccCCCCCccccEEEEEEeCC---CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeee
Q 003882 417 --WVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLV 491 (789)
Q Consensus 417 --~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 491 (789)
.+||+++++|+||+|||.|.|.+... ...|.|+|||++.++ .|++||++.|++++. +.....|++|..
T Consensus 66 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~-----~~~~lG~~~i~l~~~--~~~~~~W~~l~~ 138 (153)
T 1w15_A 66 ISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGS-----RNEVIGRLVLGATAE--GSGGGHWKEICD 138 (153)
T ss_dssp EEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTS-----CCEEEEEEEESTTCC--SHHHHHHHHHHH
T ss_pred eceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCCCC-----CCcEEEEEEECCCCC--chHHHHHHHHHh
Confidence 68999999999999999999998764 368999999999876 789999999999983 344466666653
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=7.1e-16 Score=146.60 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=88.6
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeecccc-CCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCc
Q 003882 53 MFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFE-KKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDD 131 (789)
Q Consensus 53 ~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~-~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~ 131 (789)
++.|.|+|++|++|+ ..|.+||||+|+ .+..+|+++. +|.||+|||+|.|.+.+. ...|.|+|||+| +++|+
T Consensus 13 ~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~-~~~L~~~V~D~d-~~~dd 85 (167)
T 2cjs_A 13 LSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRL-DLGLTVEVWNKG-LIWDT 85 (167)
T ss_dssp CCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCT-TSEEEEEEEECC-SSCCE
T ss_pred eEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCC-CCEEEEEEEECC-CCCCc
Confidence 588999999999885 267899999999 4445666665 699999999999999875 468999999999 88999
Q ss_pred eeEEEEEEccccCCCCCCCC--CCCCeeEEcccCCCCC-----ccceEEEEEEEEe
Q 003882 132 YIGKVVFDMNEVPTRVPPDS--PLAPQWYRLEDRRDDR-----KVKGEVMLAVWIG 180 (789)
Q Consensus 132 ~lG~~~i~l~~l~~~~~~~~--~~~~~w~~L~~~~~~~-----~~~G~l~l~~~~~ 180 (789)
+||++.|+|.++..... +. ...+.||.+....+.. ...+.+.+.+++.
T Consensus 86 ~iG~~~i~L~~l~~~~~-~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e 140 (167)
T 2cjs_A 86 MVGTVWIPLRTIRQSNE-EGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE 140 (167)
T ss_dssp EEEEEEEEGGGSCBCSS-CCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEE
T ss_pred eEEEEEEEHHHhcccCc-CCcccceeeeeeeEcCCCCCCceEccccceEEEEEEee
Confidence 99999999999876531 11 1222445544333320 1235566777664
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=5.8e-16 Score=141.34 Aligned_cols=117 Identities=21% Similarity=0.328 Sum_probs=85.0
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeecccc-CCCCCccccEEEEEEeCCCceEEEEEEeCCCCCC
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLV-DNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGG 458 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~-~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~ 458 (789)
.|.|.|+|++|++|.. .|.+||||+|+ ++..+|++++ +++||.|||.|.|.+.++...|.|+|||+| ++
T Consensus 4 ~~~L~V~V~~A~~l~~------~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~- 73 (131)
T 2cjt_A 4 MSLLCVGVKKAKFDGA------QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LI- 73 (131)
T ss_dssp CEEEEEEEEEEECSSC------GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SS-
T ss_pred ceEEEEEEEEeECCCC------CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CC-
Confidence 4799999999998852 36899999999 3445676665 699999999999999987789999999999 65
Q ss_pred CCCCCCCccEEEEEECcccccCc------eEeeeEeeeecC--CCCC--ccceEEEEEEEEe
Q 003882 459 SGTKPDSRIGKVRIRLSTLEADR------IYTHSYPLLVLN--PSGV--KKMGELQLAVRFT 510 (789)
Q Consensus 459 ~~~~~d~~lG~~~i~l~~l~~~~------~~~~~~~L~~~~--~~g~--~~~G~i~l~~~f~ 510 (789)
.|++||++.|+|+++.... +...||++...+ ..|. ...+.+.+.++|+
T Consensus 74 ----~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~~ 131 (131)
T 2cjt_A 74 ----WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE 131 (131)
T ss_dssp ----CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEEC
T ss_pred ----CCCeEEEEEEEHHHhhhcCCCCccccEEcccccccCCCcCcceECCCccEEEEEEEeC
Confidence 8999999999999986432 334444443221 1121 1245577777663
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-15 Score=134.21 Aligned_cols=117 Identities=19% Similarity=0.254 Sum_probs=103.8
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeecccc-CCCCCccccEEEEEEeC---CCceEEEEEEeCCCCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLV-DNFNPKWNEQYTWEVYD---PCTVITLGVFDNCHLG 457 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~-~t~~P~wne~~~f~v~~---~~~~l~v~v~d~~~~~ 457 (789)
.|+|.|.+|.||+ |++|||+++.+.+.+++|++++ .+.||+|||.|+|++.. ....|.|.|+|++.++
T Consensus 22 sL~V~l~~a~~Lp--------g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~ 93 (144)
T 3l9b_A 22 ALIVHLKTVSELR--------GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVF 93 (144)
T ss_dssp EEEEEEEEEESCC--------SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTS
T ss_pred EEEEEEEEecCCC--------CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcccc
Confidence 7899999999997 5899999999999999999998 59999999999999985 3779999999999997
Q ss_pred CCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEeecC
Q 003882 458 GSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTCLS 513 (789)
Q Consensus 458 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~ 513 (789)
++.+||++.|+|.++..++....+-+|.+.+. ....++|.++++|+|..
T Consensus 94 -----~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~--~~~~a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 94 -----SNKLIGTFRMVLQKVVEENRVEVSDTLIDDNN--AIIKTSLSMEVRYQAAD 142 (144)
T ss_dssp -----CCEEEEEEEEESHHHHHHSEEEEEEEEECTTS--CEEEEEEEEEEEEEETT
T ss_pred -----CCCEEEEEEEEhHHhccCCeEEEeecccCCCC--CccccEEEEEEEecCCC
Confidence 89999999999999998887788888886643 33358999999999864
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-15 Score=141.77 Aligned_cols=120 Identities=20% Similarity=0.305 Sum_probs=92.3
Q ss_pred CccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeecccc-CCCCCccccEEEEEEeCCCceEEEEEEeCCCCC
Q 003882 379 PIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLV-DNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLG 457 (789)
Q Consensus 379 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~-~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~ 457 (789)
..|.|.|+|++|++|.. .+.+||||+|+ .+..+|++++ ++.||+|||.|.|.+.++...|.|+|||+| ++
T Consensus 12 ~~~~L~V~V~~A~~l~~------~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~ 82 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDGA------QEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LI 82 (167)
T ss_dssp CCCEEEEEEEEEECSSC------GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SS
T ss_pred ceEEEEEEEEEEECCCC------CCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CC
Confidence 35799999999998842 36899999999 3446777776 699999999999999988889999999999 65
Q ss_pred CCCCCCCCccEEEEEECcccccCc------eEeeeEeeeecCCC--CC--ccceEEEEEEEEeec
Q 003882 458 GSGTKPDSRIGKVRIRLSTLEADR------IYTHSYPLLVLNPS--GV--KKMGELQLAVRFTCL 512 (789)
Q Consensus 458 ~~~~~~d~~lG~~~i~l~~l~~~~------~~~~~~~L~~~~~~--g~--~~~G~i~l~~~f~~~ 512 (789)
+|++||++.|+|.++.... +...||.+...+.. |. ...|.+.++++|...
T Consensus 83 -----~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e~~ 142 (167)
T 2cjs_A 83 -----WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFELP 142 (167)
T ss_dssp -----CCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEECC
T ss_pred -----CCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEeecC
Confidence 8999999999999986432 44566665433211 11 225678888888643
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.60 E-value=3.8e-15 Score=169.58 Aligned_cols=123 Identities=23% Similarity=0.365 Sum_probs=106.0
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCc
Q 003882 52 QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDD 131 (789)
Q Consensus 52 ~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~ 131 (789)
..+.|.|+|++|++|+..|..|.+||||+|++++++++|+++++|.||+|||+|.|.+.......|.|+|||+|.+++|+
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d 464 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDD 464 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCC
T ss_pred CCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCC
Confidence 45799999999999999999999999999999999999999999999999999999998777788999999999999999
Q ss_pred eeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 132 YIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 132 ~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
+||++.++|.++..+..... ....|++|... ..|+|.+++.+.
T Consensus 465 ~lG~~~~~l~~l~~~~~~~~-~~~~~~~l~~~-----~~G~i~l~~~l~ 507 (510)
T 3jzy_A 465 FLGRTEIPVAKIRTEQESKG-PMTRRLLLHEV-----PTGEVWVRFDLQ 507 (510)
T ss_dssp EEEEEEEEHHHHHHHHHHHC-SCCEEEECBSS-----SSCEEEEEEEEE
T ss_pred ceEEEEEEHHHhccccCCCC-ceeeeecCCCC-----CCceEEEEEEEE
Confidence 99999999999986532111 12389999864 368888887653
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.7e-15 Score=163.42 Aligned_cols=112 Identities=21% Similarity=0.212 Sum_probs=96.0
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccC-CCCceEEEEEEeCCCCCCC
Q 003882 52 QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEK-IQSSVLEVFVRDREIVGRD 130 (789)
Q Consensus 52 ~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~-~~~~~l~v~V~d~~~~~~d 130 (789)
.++.|.|+|++|++|+. |..|.+||||+|+++++++||+++++|+||+|||+|.|.+.. .....|+|+|||+|.+++|
T Consensus 392 ~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~d 470 (540)
T 3nsj_A 392 GLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDD 470 (540)
T ss_dssp TEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCC
T ss_pred cccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence 47899999999999998 889999999999999999999999999999999999998643 3468999999999999999
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEee
Q 003882 131 DYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGT 181 (789)
Q Consensus 131 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 181 (789)
|+||++.++|.. + ..+ .|++|. .|+|.+++.+..
T Consensus 471 D~LG~~~~~L~~---g-~~~-----~~~~l~--------~G~l~~~~~~~c 504 (540)
T 3nsj_A 471 DLLGSCDRSPHS---G-FHE-----VTCELN--------HGRVKFSYHAKC 504 (540)
T ss_dssp EEEEEEEECCCS---E-EEE-----EEEECS--------SSEEEEEEEEEE
T ss_pred CEEEEEEEEeeC---C-cEE-----EEEEcC--------CeEEEEEEEEEE
Confidence 999999999872 2 122 688753 378888877543
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-14 Score=165.97 Aligned_cols=119 Identities=28% Similarity=0.471 Sum_probs=103.1
Q ss_pred CCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCC
Q 003882 378 QPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCHL 456 (789)
Q Consensus 378 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~ 456 (789)
...|.|.|+|++|+||+++| ..|.+||||++.++++.++|+++++|+||.|||.|.|.+..+ ...|.|+|||+|.+
T Consensus 384 ~~~~~l~v~v~~a~~L~~~d---~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~ 460 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKACK---PNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQF 460 (510)
T ss_dssp --CEEEEEEEEEEESCCCCS---TTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSS
T ss_pred CCCceEEEEeceeecCCCCC---CCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC
Confidence 35689999999999999874 458999999999999999999999999999999999999875 46899999999998
Q ss_pred CCCCCCCCCccEEEEEECcccccCce----EeeeEeeeecCCCCCccceEEEEEEEEe
Q 003882 457 GGSGTKPDSRIGKVRIRLSTLEADRI----YTHSYPLLVLNPSGVKKMGELQLAVRFT 510 (789)
Q Consensus 457 ~~~~~~~d~~lG~~~i~l~~l~~~~~----~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 510 (789)
+ +|++||++.++|.++..+.. ...|++|... ..|+|++++.+.
T Consensus 461 ~-----~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~------~~G~i~l~~~l~ 507 (510)
T 3jzy_A 461 S-----PDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV------PTGEVWVRFDLQ 507 (510)
T ss_dssp S-----SCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS------SSCEEEEEEEEE
T ss_pred C-----CCCceEEEEEEHHHhccccCCCCceeeeecCCCC------CCceEEEEEEEE
Confidence 6 89999999999999987543 6789998632 459999988765
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=164.09 Aligned_cols=121 Identities=20% Similarity=0.325 Sum_probs=105.4
Q ss_pred ceeEEEEEEEEeeCCCCCCC--CCCCCcEEEEEECC-----eeeeeccccCC-CCCeeccEEEEEccCCCCceEEEEEEe
Q 003882 52 QMFYLYVRVEKARDLPTNPV--SGSCDPYVEVKLGN-----YKGKTRHFEKK-SNPEWKQVFAFSKEKIQSSVLEVFVRD 123 (789)
Q Consensus 52 ~~~~L~V~v~~a~~L~~~~~--~g~~dpyv~v~~~~-----~~~~T~~~~~t-~nP~wne~f~f~~~~~~~~~l~v~V~d 123 (789)
..+.|.|+|++|++|+..+. .+.+||||+|.+.+ .++||++++++ .||+|||+|.|.+..+....|+|+|||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D 574 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED 574 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence 34889999999999998873 68899999999955 57899999998 999999999999977656799999999
Q ss_pred CCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 124 REIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 124 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
+|.++++++||++.++|..|..+. .|++|.+..|..-..+.|.+.+.+.
T Consensus 575 ~D~~~~dd~iG~~~ipl~~L~~G~--------r~v~L~d~~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 575 YDSSSKNDFIGQSTIPWNSLKQGY--------RHVHLLSKNGDQHPSATLFVKISIQ 623 (624)
T ss_dssp CCSSSCCEEEEEEEEEGGGBCCEE--------EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred cCCCCCCceeEEEEEEHHHcCCCc--------EEEeCCCCCcCCCCceEEEEEEEEE
Confidence 999999999999999999997652 7999999887644568888888764
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-14 Score=159.59 Aligned_cols=112 Identities=21% Similarity=0.261 Sum_probs=95.9
Q ss_pred CCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeC--CCceEEEEEEeCCC
Q 003882 378 QPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYD--PCTVITLGVFDNCH 455 (789)
Q Consensus 378 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~--~~~~l~v~v~d~~~ 455 (789)
...|.|+|+|++|+||+. |. .|.+||||+|+++++.+||+++++++||+|||.|.|.+.+ ....|.|+|||+|.
T Consensus 391 ~~~~~L~V~V~~A~~L~~-D~---~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~ 466 (540)
T 3nsj_A 391 RGLAHLVVSNFRAEHLWG-DY---TTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADY 466 (540)
T ss_dssp TTEEEEEEEEEEEESCCC-SS---CSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCS
T ss_pred CcccEEEEEEEEccCCCc-cc---CCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCC
Confidence 346899999999999987 43 5789999999999999999999999999999999998753 57899999999999
Q ss_pred CCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEee
Q 003882 456 LGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTC 511 (789)
Q Consensus 456 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 511 (789)
.+ .||+||++.++|.. +....|.+|. .|.|++.+....
T Consensus 467 ~~-----~dD~LG~~~~~L~~----g~~~~~~~l~---------~G~l~~~~~~~c 504 (540)
T 3nsj_A 467 GW-----DDDLLGSCDRSPHS----GFHEVTCELN---------HGRVKFSYHAKC 504 (540)
T ss_dssp SS-----CCEEEEEEEECCCS----EEEEEEEECS---------SSEEEEEEEEEE
T ss_pred CC-----CCCEEEEEEEEeeC----CcEEEEEEcC---------CeEEEEEEEEEE
Confidence 75 78999999999983 3457888863 489988877654
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-14 Score=164.92 Aligned_cols=106 Identities=25% Similarity=0.417 Sum_probs=95.9
Q ss_pred ceeEEEEEEEEeeCCCC---CCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCC
Q 003882 52 QMFYLYVRVEKARDLPT---NPVSGSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDRE 125 (789)
Q Consensus 52 ~~~~L~V~v~~a~~L~~---~~~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~ 125 (789)
+.+.|.|+|++|++|+. +|..|.+||||+|++++ .++||+++++|+||+|||+|.|.+.......|+|+|||+|
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D 95 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN 95 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECC
T ss_pred CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECC
Confidence 45899999999999998 77788999999999995 5789999999999999999999998766789999999999
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccC
Q 003882 126 IVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR 163 (789)
Q Consensus 126 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 163 (789)
.++ |++||++.|+|.++..+...+ .|++|.+.
T Consensus 96 ~~~-ddfIG~v~I~L~~L~~g~~~~-----~w~~L~~~ 127 (749)
T 1cjy_A 96 YVM-DETLGTATFTVSSMKVGEKKE-----VPFIFNQV 127 (749)
T ss_dssp SSS-CEEEEEECCBSTTSCTTCCCC-----EEEEETTT
T ss_pred CCC-CceeEEEEEEHHHcCCCCceE-----EEEecCCC
Confidence 998 999999999999998776555 99999764
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=156.58 Aligned_cols=121 Identities=22% Similarity=0.314 Sum_probs=100.7
Q ss_pred CccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-----EEEeeccccCC-CCCccccEEEEEEeCC-CceEEEEEE
Q 003882 379 PIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDN-FNPKWNEQYTWEVYDP-CTVITLGVF 451 (789)
Q Consensus 379 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~t-~~P~wne~~~f~v~~~-~~~l~v~v~ 451 (789)
..+.|+|+|++|++|+.++. ...+.+||||+|.+.+ .+.||++++++ +||+|||.|.|.+..+ ...|.|+||
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~-~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~ 573 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNK-NKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVE 573 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSS-CSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccc-cccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEE
Confidence 45899999999999998752 1257899999999943 68999999997 9999999999999876 368999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCc-cceEEEEEEEEe
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVK-KMGELQLAVRFT 510 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~f~ 510 (789)
|+|.++ +|++||++.|+|..|..|. +|++|.+.. |.. ..|+|.+.+.|.
T Consensus 574 D~D~~~-----~dd~iG~~~ipl~~L~~G~---r~v~L~d~~--g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 574 DYDSSS-----KNDFIGQSTIPWNSLKQGY---RHVHLLSKN--GDQHPSATLFVKISIQ 623 (624)
T ss_dssp ECCSSS-----CCEEEEEEEEEGGGBCCEE---EEEEEECTT--SCEEEEEEEEEEEEEE
T ss_pred EcCCCC-----CCceeEEEEEEHHHcCCCc---EEEeCCCCC--cCCCCceEEEEEEEEE
Confidence 999886 8999999999999998753 699998653 332 358888887763
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.9e-15 Score=165.09 Aligned_cols=121 Identities=19% Similarity=0.329 Sum_probs=21.5
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE-EEeeccccCC---CCCccccEEEEEEeCCCceEEEEEEeC-C
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-WVRTRTLVDN---FNPKWNEQYTWEVYDPCTVITLGVFDN-C 454 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~~~T~~~~~t---~~P~wne~~~f~v~~~~~~l~v~v~d~-~ 454 (789)
.|.|+|+|++|+||++++ ||||++.++++ +.||+++++| +||+|||.|.|.+......|.|+|||+ |
T Consensus 10 ~~~L~V~VieAk~L~~~d--------dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d 81 (483)
T 3bxj_A 10 DNVLKLWIIEARELPPKK--------RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSD 81 (483)
T ss_dssp EECC-----------------------------------------------------CCEECC-----------------
T ss_pred ccEEEEEEEEcCCcCCCC--------CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCC
Confidence 378999999999998752 99999999876 6899999999 999999999999766578999999994 4
Q ss_pred C---CCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCC---------------------CCCccceEEEEEEEEe
Q 003882 455 H---LGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNP---------------------SGVKKMGELQLAVRFT 510 (789)
Q Consensus 455 ~---~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~---------------------~g~~~~G~i~l~~~f~ 510 (789)
. .+ +|++||++.|++.++..++..+.||+|..... +|.+..|.|+|+++|.
T Consensus 82 ~~~~~~-----~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~ 156 (483)
T 3bxj_A 82 KKRKKD-----KAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQ 156 (483)
T ss_dssp ------------------------------CCEECC--------------------------------------CEEEEE
T ss_pred ccccCC-----CCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEee
Confidence 2 33 78999999999999998888899999965432 1223469999999998
Q ss_pred ecC
Q 003882 511 CLS 513 (789)
Q Consensus 511 ~~~ 513 (789)
+..
T Consensus 157 ~~~ 159 (483)
T 3bxj_A 157 TMS 159 (483)
T ss_dssp ECC
T ss_pred eee
Confidence 653
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.2e-13 Score=155.67 Aligned_cols=104 Identities=19% Similarity=0.263 Sum_probs=93.3
Q ss_pred CCccEEEEEEEEccCCCC---CccCCCCCCcCcEEEEEEC---CEEEeeccccCCCCCccccEEEEEEeC-CCceEEEEE
Q 003882 378 QPIGILEVGILSAQGLLP---MKTRDGRGTTDAYCVAKYG---LKWVRTRTLVDNFNPKWNEQYTWEVYD-PCTVITLGV 450 (789)
Q Consensus 378 ~~~g~l~v~v~~a~~L~~---~~~~~~~~~~dpyv~v~~~---~~~~~T~~~~~t~~P~wne~~~f~v~~-~~~~l~v~v 450 (789)
++.|.|+|+|++|+||+. +|. .|.+||||+|+++ .+++||+++++++||+|||.|.|.+.. ....|.|+|
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~D~---~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V 91 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFGDM---LDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITL 91 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHHHH---HCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEE
T ss_pred CCccEEEEEEEEEECCCCccccCC---CCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEE
Confidence 456899999999999998 643 4789999999997 468999999999999999999999987 467999999
Q ss_pred EeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 451 FDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 451 ~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
||+|.+ .|++||++.|+|.++..+.....|++|.
T Consensus 92 ~D~D~~------~ddfIG~v~I~L~~L~~g~~~~~w~~L~ 125 (749)
T 1cjy_A 92 MDANYV------MDETLGTATFTVSSMKVGEKKEVPFIFN 125 (749)
T ss_dssp EECCSS------SCEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred EECCCC------CCceeEEEEEEHHHcCCCCceEEEEecC
Confidence 999986 3889999999999999888889999995
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.2e-14 Score=158.16 Aligned_cols=100 Identities=20% Similarity=0.350 Sum_probs=12.7
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-eeeeccccCC---CCCeeccEEEEEccCCCCceEEEEEEeC-C---
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-KGKTRHFEKK---SNPEWKQVFAFSKEKIQSSVLEVFVRDR-E--- 125 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-~~~T~~~~~t---~nP~wne~f~f~~~~~~~~~l~v~V~d~-~--- 125 (789)
+.|.|+|++|++|+++| ||||+++++++ ..||+++++| .||+|||+|.|.+... ...|.|+|||. +
T Consensus 11 ~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~~~L~v~V~d~~d~~~ 84 (483)
T 3bxj_A 11 NVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA-VRALRLHLYRDSDKKR 84 (483)
T ss_dssp ECC--------------------------------------------------CCEECC---------------------
T ss_pred cEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCC-ccEEEEEEEecCCccc
Confidence 67999999999999876 99999999986 5799999999 9999999999997543 48999999994 4
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 126 IVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 126 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
..++|++||++.|++.++..+...+ .||+|.+..
T Consensus 85 ~~~~d~~lG~v~i~l~~l~~~~~~~-----~W~~L~~~~ 118 (483)
T 3bxj_A 85 KKDKAGYVGLVTVPVATLAGRHFTE-----QWYPVTLPT 118 (483)
T ss_dssp ----------------------CCE-----ECC------
T ss_pred cCCCCceEEEEEEEHHHhcCCCCCC-----eEEECCCCC
Confidence 3678999999999999998765555 999996554
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1e-11 Score=145.53 Aligned_cols=105 Identities=30% Similarity=0.563 Sum_probs=93.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeeeeeccccCCCCCeeccEEEEEccCC-CCceEEEEEEeCCCC
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLG-----NYKGKTRHFEKKSNPEWKQVFAFSKEKI-QSSVLEVFVRDREIV 127 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~~~~~-~~~~l~v~V~d~~~~ 127 (789)
+.|.|+|++|++|..+|..|.+||||++++. ..+++|+++++|+||+|||+|.|.+... ....|.|+|||+|.+
T Consensus 172 ~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~~ 251 (674)
T 3pfq_A 172 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT 251 (674)
T ss_dssp SEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCSS
T ss_pred ceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeecccc
Confidence 7899999999999999999999999999993 3578999999999999999999998543 346799999999999
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 128 GRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 128 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
++|++||++.+++.++..... + .|++|....
T Consensus 252 ~~dd~iG~~~i~l~~l~~~~~-~-----~w~~Lls~~ 282 (674)
T 3pfq_A 252 SRNDFMGSLSFGISELQKAGV-D-----GWFKLLSQE 282 (674)
T ss_dssp SCCEECCBCCCBTTHHHHCCE-E-----EEEECBCTT
T ss_pred cccccccccccchhhhccCCc-c-----cceeecccc
Confidence 999999999999999987642 3 899998754
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.23 E-value=5.7e-11 Score=138.46 Aligned_cols=112 Identities=18% Similarity=0.261 Sum_probs=95.8
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-------eeeeeccccC-CCCCeeccE-EEEE-ccCCCCceEEEEEEe
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-------YKGKTRHFEK-KSNPEWKQV-FAFS-KEKIQSSVLEVFVRD 123 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-------~~~~T~~~~~-t~nP~wne~-f~f~-~~~~~~~~l~v~V~d 123 (789)
+.|.|+|++|++|+.. .+||||+|.+.+ .++||+++.+ +.||+|||+ |.|. +..+.-..|+|+|||
T Consensus 650 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D 725 (816)
T 3qr0_A 650 GTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE 725 (816)
T ss_dssp EEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred eEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEe
Confidence 6899999999999853 689999999975 4679999986 599999998 9998 765555799999999
Q ss_pred CCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEee
Q 003882 124 REIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGT 181 (789)
Q Consensus 124 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 181 (789)
++ +++||++.++|..|..+. ++++|.+..|..-..+.|.+.+.+..
T Consensus 726 ~d----ddfiG~~~ipL~~L~~Gy--------R~vpL~~~~g~~~~~atLfv~i~~~~ 771 (816)
T 3qr0_A 726 EN----GKFIGHRVMPLDGIKPGY--------RHVPLRNESNRPLGLASVFAHIVAKD 771 (816)
T ss_dssp TT----SCEEEEEEEESTTCCCEE--------EEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred cC----CCeeeEEEEEHHHcCCcc--------eEEEEeCCCCCCCCceEEEEEEEEEe
Confidence 84 799999999999998763 78999998887556689999988864
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.7e-11 Score=140.73 Aligned_cols=112 Identities=17% Similarity=0.247 Sum_probs=95.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eeeeeccccC-CCCCeecc-EEEEE-ccCCCCceEEEEEEeC
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN------YKGKTRHFEK-KSNPEWKQ-VFAFS-KEKIQSSVLEVFVRDR 124 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~------~~~~T~~~~~-t~nP~wne-~f~f~-~~~~~~~~l~v~V~d~ 124 (789)
..|.|+|++|++|+.. .+||||+|.+.+ .++||+++.+ +.||+||| +|.|. +..+....|+|+|||+
T Consensus 725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~ 800 (885)
T 3ohm_B 725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEE 800 (885)
T ss_dssp EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEET
T ss_pred eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcC
Confidence 5799999999999853 689999999975 2579999986 59999999 69998 6555557899999998
Q ss_pred CCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEee
Q 003882 125 EIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGT 181 (789)
Q Consensus 125 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 181 (789)
+ ++|||++.++|..|..+. ++++|.+..|..-..|.|.+.+.+..
T Consensus 801 d----ddfiG~~~lpL~~L~~Gy--------R~vpL~~~~g~~l~~atLfv~i~~~~ 845 (885)
T 3ohm_B 801 G----GKFVGHRILPVSAIRSGY--------HYVCLRNEANQPLCLPALLIYTEASD 845 (885)
T ss_dssp T----TEEEEEEEEETTTCCCEE--------EEEEEECTTSCEEEEEEEEEEEEEEE
T ss_pred C----ccEEeeEEEEHHHcCCCc--------eEEEecCCCCCccCceEEEEEEEEEe
Confidence 7 799999999999998763 78999999887557899999998874
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.19 E-value=8.3e-11 Score=138.06 Aligned_cols=112 Identities=20% Similarity=0.264 Sum_probs=92.0
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eeeeec-cccC-CCCCeecc-EEEE-EccCCCCceEEEEEE
Q 003882 53 MFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN------YKGKTR-HFEK-KSNPEWKQ-VFAF-SKEKIQSSVLEVFVR 122 (789)
Q Consensus 53 ~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~------~~~~T~-~~~~-t~nP~wne-~f~f-~~~~~~~~~l~v~V~ 122 (789)
.+.|.|+|++|++|+. +.+||||+|.+.+ +++||+ ++++ +.||+||| +|.| .+..+.-..|+|.||
T Consensus 677 ~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~ 752 (799)
T 2zkm_X 677 ATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVM 752 (799)
T ss_dssp CEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEE
T ss_pred eeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEE
Confidence 4789999999999985 4689999999953 357999 7765 68999999 7999 776555568999999
Q ss_pred eCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 123 DREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 123 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
|++ +++||++.|+|..|..+. .|++|.+..|..-..+.|.+.+.+.
T Consensus 753 D~d----~d~iG~~~ipl~~L~~G~--------r~v~L~~~~g~~~~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 753 EEG----NKFLGHRIIPINALNSGY--------HHLCLHSESNMPLTMPALFIFLEMK 798 (799)
T ss_dssp ETT----TEEEEEEEEEGGGBCCEE--------EEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred EeC----CCccceEeeehhhcCCCc--------EEEeccCCCCCCCCceEEEEEEEEE
Confidence 986 799999999999998652 7899998877644567787777653
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-10 Score=135.81 Aligned_cols=103 Identities=22% Similarity=0.403 Sum_probs=90.7
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE-----CCEEEeeccccCCCCCccccEEEEEEeC--CCceEEEEEEeC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-----GLKWVRTRTLVDNFNPKWNEQYTWEVYD--PCTVITLGVFDN 453 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~f~v~~--~~~~l~v~v~d~ 453 (789)
+.|.|.|++|++|.++| ..|.+||||++.+ +..+.+|+++++|+||.|||.|.|.+.. ....|.|+|||+
T Consensus 172 ~~L~V~v~~a~~L~~~d---~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~ 248 (674)
T 3pfq_A 172 EVLIVVVRDAKNLVPMD---PNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDW 248 (674)
T ss_dssp SEEEEEEEEEESCCCCS---TTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEEC
T ss_pred ceeeeeeecccccCCCC---cccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeec
Confidence 68999999999999985 4589999999998 4467999999999999999999999875 356799999999
Q ss_pred CCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeec
Q 003882 454 CHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVL 492 (789)
Q Consensus 454 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 492 (789)
|..+ .|++||.+.++++++...+ ...|++|...
T Consensus 249 d~~~-----~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~ 281 (674)
T 3pfq_A 249 DLTS-----RNDFMGSLSFGISELQKAG-VDGWFKLLSQ 281 (674)
T ss_dssp CSSS-----CCEECCBCCCBTTHHHHCC-EEEEEECBCT
T ss_pred cccc-----ccccccccccchhhhccCC-cccceeeccc
Confidence 9986 8999999999999998765 4899999754
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.07 E-value=6e-10 Score=129.88 Aligned_cols=110 Identities=19% Similarity=0.265 Sum_probs=89.0
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC-------EEEeeccccC-CCCCccccE-EEEE-EeCC-CceEEE
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-------KWVRTRTLVD-NFNPKWNEQ-YTWE-VYDP-CTVITL 448 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~-------~~~~T~~~~~-t~~P~wne~-~~f~-v~~~-~~~l~v 448 (789)
.+.|+|+|++|++|+. ..+||||+|.+.+ +++||+++++ ++||+|||. |.|. |..| -..|.|
T Consensus 649 ~~~L~V~Visaq~L~~-------~~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf 721 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSD-------KQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRI 721 (816)
T ss_dssp CEEEEEEEEEEECCCS-------SCCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEE
T ss_pred ceEEEEEEEEcccCCC-------CCCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEE
Confidence 3789999999999974 2689999999854 6789999986 699999998 9998 7655 468999
Q ss_pred EEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCcc-ceEEEEEEEEe
Q 003882 449 GVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKK-MGELQLAVRFT 510 (789)
Q Consensus 449 ~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~-~G~i~l~~~f~ 510 (789)
.|||++ +++||++.|||+.|..| -+++||.+.. |... .++|.+.+...
T Consensus 722 ~V~D~d---------ddfiG~~~ipL~~L~~G---yR~vpL~~~~--g~~~~~atLfv~i~~~ 770 (816)
T 3qr0_A 722 IVSEEN---------GKFIGHRVMPLDGIKPG---YRHVPLRNES--NRPLGLASVFAHIVAK 770 (816)
T ss_dssp EEEETT---------SCEEEEEEEESTTCCCE---EEEEEEECTT--SCEEEEEEEEEEEEEE
T ss_pred EEEecC---------CCeeeEEEEEHHHcCCc---ceEEEEeCCC--CCCCCceEEEEEEEEE
Confidence 999963 57999999999999876 3579998653 3322 37888887765
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=4e-10 Score=132.00 Aligned_cols=109 Identities=21% Similarity=0.275 Sum_probs=88.3
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC------EEEeeccccC-CCCCcccc-EEEEE-EeCC-CceEEEEE
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL------KWVRTRTLVD-NFNPKWNE-QYTWE-VYDP-CTVITLGV 450 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~-t~~P~wne-~~~f~-v~~~-~~~l~v~v 450 (789)
..|.|+|++|++|+. ..+||||+|.+.+ .++||+++++ ++||+||| .|.|. |..+ ...|.|+|
T Consensus 725 ~~L~V~Visaq~L~~-------~~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V 797 (885)
T 3ohm_B 725 NALRVKVISGQFLSD-------RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAA 797 (885)
T ss_dssp EEEEEEEEEEESCCS-------SCCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEE
T ss_pred eEEEEEEEEeccCcc-------cCCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEE
Confidence 489999999999974 2689999999854 3589999986 59999999 59998 6554 46899999
Q ss_pred EeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCc-cceEEEEEEEEe
Q 003882 451 FDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVK-KMGELQLAVRFT 510 (789)
Q Consensus 451 ~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~i~l~~~f~ 510 (789)
||+| +++||++.|||+.|..| -+++||.+.. |.. ..|+|.|.+.+.
T Consensus 798 ~D~d---------ddfiG~~~lpL~~L~~G---yR~vpL~~~~--g~~l~~atLfv~i~~~ 844 (885)
T 3ohm_B 798 FEEG---------GKFVGHRILPVSAIRSG---YHYVCLRNEA--NQPLCLPALLIYTEAS 844 (885)
T ss_dssp EETT---------TEEEEEEEEETTTCCCE---EEEEEEECTT--SCEEEEEEEEEEEEEE
T ss_pred EcCC---------ccEEeeEEEEHHHcCCC---ceEEEecCCC--CCccCceEEEEEEEEE
Confidence 9964 57999999999999876 3468998653 332 358999988876
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-09 Score=127.50 Aligned_cols=111 Identities=18% Similarity=0.283 Sum_probs=87.1
Q ss_pred CccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC------EEEeec-cccC-CCCCcccc-EEEE-EEeCC-CceEE
Q 003882 379 PIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL------KWVRTR-TLVD-NFNPKWNE-QYTW-EVYDP-CTVIT 447 (789)
Q Consensus 379 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~------~~~~T~-~~~~-t~~P~wne-~~~f-~v~~~-~~~l~ 447 (789)
..|.|.|+|++|++|+. +.+||||+|.+.+ +++||+ ++++ ++||+||| .|.| .|..+ -..|.
T Consensus 676 ~~~~L~V~Visa~~L~~-------~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr 748 (799)
T 2zkm_X 676 VATTLSITVISGQFLSE-------RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLR 748 (799)
T ss_dssp TCEEEEEEEEEEESCCS-------SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEE
T ss_pred eeeeEEEEEEeccccCc-------cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEE
Confidence 45799999999999984 3689999999832 368999 8875 69999999 6999 78655 35899
Q ss_pred EEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 448 LGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 448 v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
|.|||+| +++||++.|||+.|..| -+|++|.+..+.. -..+.|.+.+.+
T Consensus 749 ~~V~D~d---------~d~iG~~~ipl~~L~~G---~r~v~L~~~~g~~-~~~~~Lfv~i~~ 797 (799)
T 2zkm_X 749 VAVMEEG---------NKFLGHRIIPINALNSG---YHHLCLHSESNMP-LTMPALFIFLEM 797 (799)
T ss_dssp EEEEETT---------TEEEEEEEEEGGGBCCE---EEEEEEECTTCCE-EEEEEEEEEEEE
T ss_pred EEEEEeC---------CCccceEeeehhhcCCC---cEEEeccCCCCCC-CCceEEEEEEEE
Confidence 9999964 57999999999999865 3589997653211 124777777765
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1e-08 Score=88.71 Aligned_cols=107 Identities=15% Similarity=0.285 Sum_probs=84.2
Q ss_pred cEEEEEEEEccC--CCCCccCCCCCCcCcEEEEEECCEE----Eee-ccccCCCCCccccEEEEEEeCCCceEEEEEEeC
Q 003882 381 GILEVGILSAQG--LLPMKTRDGRGTTDAYCVAKYGLKW----VRT-RTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDN 453 (789)
Q Consensus 381 g~l~v~v~~a~~--L~~~~~~~~~~~~dpyv~v~~~~~~----~~T-~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~ 453 (789)
+.|+|.+.++.- |++ .....||||.|.+.... .+| .++++|..|.|||.|.-.|.+ ...|.|.||+.
T Consensus 6 ~flRi~~~~~~~~~~~~-----~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~ 79 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQA-----EDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRA 79 (126)
T ss_dssp CEEEEEEEEEECSSCCC-----SSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEE
T ss_pred ccEEeeeccccccccCC-----ccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcC
Confidence 478888766553 332 12368999999986543 265 777789999999999999885 88999999973
Q ss_pred CCCCCCCCCCCCccEEEEEECcccc-----cCceEeeeEeeeecCCCCCccceEEEEEEEEe
Q 003882 454 CHLGGSGTKPDSRIGKVRIRLSTLE-----ADRIYTHSYPLLVLNPSGVKKMGELQLAVRFT 510 (789)
Q Consensus 454 ~~~~~~~~~~d~~lG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 510 (789)
. .++++.|.|++.+|. .+...+.|+.|. +.|+|++.++|-
T Consensus 80 a---------~~fvAn~tV~~edL~~~c~~~~g~~e~WvdLe--------P~Gkl~~~i~~~ 124 (126)
T 1yrk_A 80 A---------EEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ--------PQAKVLMSVQYF 124 (126)
T ss_dssp T---------TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--------SSCEEEEEEEEE
T ss_pred C---------CCeeeEEEEEHHHHHhhhccCCCceEEEEecc--------cCcEEEEEEEEe
Confidence 2 379999999999998 456789999996 579999998863
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=8.4e-09 Score=90.37 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=85.2
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE-E---Eee-ccccCCCCCccccEEEEEEeCCCceEEEEEEeCCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-W---VRT-RTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCH 455 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-~---~~T-~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~ 455 (789)
+.|+|.+.++.-.+-+. -.....||||.|.+... . .+| .++++|..|.|||.|.-.|.+ ...|.|.||+..
T Consensus 10 ~flRi~l~~~~~~~~~~--~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a- 85 (138)
T 2enj_A 10 PFLRIGLSNFDCGSCQS--CQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKGKN- 85 (138)
T ss_dssp CCEEEEEEEEECCCCCC--SCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEECSS-
T ss_pred cceEEEeeccccCCCCC--cccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEcCC-
Confidence 57888886665432211 01246899999998654 2 677 677789999999999988875 889999999732
Q ss_pred CCCCCCCCCCccEEEEEECcccc-----cCceEeeeEeeeecCCCCCccceEEEEEEEEe
Q 003882 456 LGGSGTKPDSRIGKVRIRLSTLE-----ADRIYTHSYPLLVLNPSGVKKMGELQLAVRFT 510 (789)
Q Consensus 456 ~~~~~~~~d~~lG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 510 (789)
.++|+.|.|++.+|. .+...+.|+.|+ +.|+|++.++|.
T Consensus 86 --------~~fVAn~tV~~edL~~~ck~~~g~~e~WvdLe--------P~Gkl~v~i~~~ 129 (138)
T 2enj_A 86 --------VDLISETTVELYSLAERCRKNNGKTEIWLELK--------PQGRMLMNARYF 129 (138)
T ss_dssp --------CSCCEEEEEESHHHHHHHHHTTTCEEEEEECB--------SSCEEEEEEEEC
T ss_pred --------CCeeeEEEEEHHHHHhhhccCCCceEEEEecc--------cCcEEEEEEEEE
Confidence 379999999999998 456789999996 579999999874
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.82 E-value=4.6e-08 Score=84.64 Aligned_cols=114 Identities=18% Similarity=0.281 Sum_probs=84.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCee----eee-ccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCC
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYK----GKT-RHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVG 128 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~----~~T-~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~ 128 (789)
..|+|.+.++.--.-+......||||.|.+.... .+| ..+++|..|+|||+|.-.+.+ ...|.|.|++...
T Consensus 6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~-- 81 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE--GRVIQIVLMRAAE-- 81 (126)
T ss_dssp CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT--TCEEEEEEEEETT--
T ss_pred ccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC--CEEEEEEEEcCCC--
Confidence 5688888776543222234468999999998642 355 788889999999999999987 4799999996554
Q ss_pred CCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 129 RDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 129 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
+|++.|+|.+++|..+-.........|+.|++ .|.|++.+.+.
T Consensus 82 --~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP-------~Gkl~~~i~~~ 124 (126)
T 1yrk_A 82 --EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP-------QAKVLMSVQYF 124 (126)
T ss_dssp --EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-------SCEEEEEEEEE
T ss_pred --CeeeEEEEEHHHHHhhhccCCCceEEEEeccc-------CcEEEEEEEEe
Confidence 89999999999998441000112338999987 57888887664
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.4e-08 Score=84.85 Aligned_cols=114 Identities=16% Similarity=0.371 Sum_probs=85.7
Q ss_pred eEEEEEEEEeeCCCCCC-CCCCCCcEEEEEECCe----eeee-ccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCC
Q 003882 54 FYLYVRVEKARDLPTNP-VSGSCDPYVEVKLGNY----KGKT-RHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIV 127 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~-~~g~~dpyv~v~~~~~----~~~T-~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~ 127 (789)
..|+|.+.++.--+.+. .....||||.|.+... ..+| ..+++|..|+|||+|.-.+.+ ...|.|.|++...
T Consensus 10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~--Gr~l~i~Vfh~a~- 86 (138)
T 2enj_A 10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK--GRVMQIIVKGKNV- 86 (138)
T ss_dssp CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS--SCEEEEEEECSSC-
T ss_pred cceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC--CeEEEEEEEcCCC-
Confidence 56888888776544332 1346899999999863 3677 778889999999999999887 4799999996543
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 128 GRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 128 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
+|+..|+|.+.+|..+-.........|+.|++ .|.|++.+.+.
T Consensus 87 ---~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP-------~Gkl~v~i~~~ 129 (138)
T 2enj_A 87 ---DLISETTVELYSLAERCRKNNGKTEIWLELKP-------QGRMLMNARYF 129 (138)
T ss_dssp ---SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS-------SCEEEEEEEEC
T ss_pred ---CeeeEEEEEHHHHHhhhccCCCceEEEEeccc-------CcEEEEEEEEE
Confidence 89999999999999430000112338999987 58899888875
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=94.07 E-value=0.25 Score=44.72 Aligned_cols=124 Identities=12% Similarity=0.052 Sum_probs=84.8
Q ss_pred eEEEEEEEEeeCCCCC-CCCCCCCcEEEEEEC--C-eeeeeccccCCCCCeeccEEEEEccCC-------CCceEEEEEE
Q 003882 54 FYLYVRVEKARDLPTN-PVSGSCDPYVEVKLG--N-YKGKTRHFEKKSNPEWKQVFAFSKEKI-------QSSVLEVFVR 122 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~-~~~g~~dpyv~v~~~--~-~~~~T~~~~~t~nP~wne~f~f~~~~~-------~~~~l~v~V~ 122 (789)
..+.|+|.++.-=+.. ...+..+|..-+++. . +.+.|.++. ..+|.+|.+-.|.+... .+..+.++++
T Consensus 18 nlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELh 96 (156)
T 2yrb_A 18 NLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVH 96 (156)
T ss_dssp EEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEE
T ss_pred cEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEE
Confidence 8899999998632211 002235776666554 4 345555555 88999999999987432 3568899998
Q ss_pred eCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeecC
Q 003882 123 DREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQA 183 (789)
Q Consensus 123 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~~ 183 (789)
.... +....||.+.|+|.++..+... .....+|....+.....|.|.+.+++..+.
T Consensus 97 qa~g-~~~~tla~~~I~l~~lLe~~~~----i~g~~~L~g~~g~~~~~G~LeywiRL~~Pi 152 (156)
T 2yrb_A 97 QAYS-TEYETIAACQLKFHEILEKSGR----IFCTASLIGTKGDIPNFGTVEYWFRLRVSG 152 (156)
T ss_dssp EECS-SCEEEEEEEEECCSHHHHCCSC----EEEEEEECBSSSCCTTSEEEEEEEEEEECC
T ss_pred EeeC-CCceEEEEEEEEhHHhhCcCCc----eEEEEEEEcCCCCcceEEEEEEEEEEeccc
Confidence 8754 3567999999999999966431 114557777665324689999988886543
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.20 E-value=7.6 Score=37.22 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=33.1
Q ss_pred eeeeccccCCCCCeeccEEEEEc--cCCCCceEEEEEEeCCC
Q 003882 87 KGKTRHFEKKSNPEWKQVFAFSK--EKIQSSVLEVFVRDREI 126 (789)
Q Consensus 87 ~~~T~~~~~t~nP~wne~f~f~~--~~~~~~~l~v~V~d~~~ 126 (789)
.++|.|...+.+|.|+|++.+.+ .......|.|+++....
T Consensus 78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~ 119 (220)
T 3l4c_A 78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSS 119 (220)
T ss_dssp CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCC
T ss_pred eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecc
Confidence 56889999999999999999987 33457899999987654
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=87.20 E-value=2.4 Score=38.30 Aligned_cols=123 Identities=13% Similarity=0.222 Sum_probs=79.1
Q ss_pred CccEEEEEEEEccCCCCCccCCCCCCcCc--EEEEEE-CCEEEeeccccCCCCCccccEEEEEEeCC--------CceEE
Q 003882 379 PIGILEVGILSAQGLLPMKTRDGRGTTDA--YCVAKY-GLKWVRTRTLVDNFNPKWNEQYTWEVYDP--------CTVIT 447 (789)
Q Consensus 379 ~~g~l~v~v~~a~~L~~~~~~~~~~~~dp--yv~v~~-~~~~~~T~~~~~t~~P~wne~~~f~v~~~--------~~~l~ 447 (789)
..+.+.|+|.++. +.+.-. ...+..+| ||.+.+ +-+..-|.++. ..+|.+|-+..|.|.-. ...+.
T Consensus 16 gEnlfEihi~~~~-~~~~~l-~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~ 92 (156)
T 2yrb_A 16 GENLFEIHINKVT-FSSEVL-QASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTIT 92 (156)
T ss_dssp SCEEEEEEEEEEC-CCHHHH-HHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEE
T ss_pred CCcEEEEEEeEEE-EcHHHH-hhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEE
Confidence 3468899988876 322100 00122345 555555 34556666655 88999999999988532 34788
Q ss_pred EEEEeCCCCCCCCCCCCCccEEEEEECcccccCc-eEeeeEeeeecCCCCCccceEEEEEEEEee
Q 003882 448 LGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADR-IYTHSYPLLVLNPSGVKKMGELQLAVRFTC 511 (789)
Q Consensus 448 v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 511 (789)
|++..... ..-..||.++|+|.++...+ ......+|.+..+ +....|.|+..+++..
T Consensus 93 lELhqa~g------~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g-~~~~~G~LeywiRL~~ 150 (156)
T 2yrb_A 93 LEVHQAYS------TEYETIAACQLKFHEILEKSGRIFCTASLIGTKG-DIPNFGTVEYWFRLRV 150 (156)
T ss_dssp EEEEEECS------SCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSS-CCTTSEEEEEEEEEEE
T ss_pred EEEEEeeC------CCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCC-CcceEEEEEEEEEEec
Confidence 88887533 14579999999999987543 3555667765432 2234699999998864
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=84.42 E-value=3.9 Score=48.53 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=50.4
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--CCe----eeeeccccCCCCCeeccEEEEEc--cC-CCCceEEEEEEeC
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKL--GNY----KGKTRHFEKKSNPEWKQVFAFSK--EK-IQSSVLEVFVRDR 124 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~--~~~----~~~T~~~~~t~nP~wne~f~f~~--~~-~~~~~l~v~V~d~ 124 (789)
..+.|+|..+.++... ...+-||.+.+ |++ ...|+.+.-..+|.|||.+.|++ .+ +....|.|.||+.
T Consensus 217 ~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~ 293 (940)
T 2wxf_A 217 QPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAV 293 (940)
T ss_dssp SEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEE
T ss_pred CceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEe
Confidence 5799999999999754 34677877665 443 34565555577899999999985 34 3578999999996
Q ss_pred C
Q 003882 125 E 125 (789)
Q Consensus 125 ~ 125 (789)
.
T Consensus 294 ~ 294 (940)
T 2wxf_A 294 V 294 (940)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=83.50 E-value=4.1 Score=48.30 Aligned_cols=92 Identities=12% Similarity=0.223 Sum_probs=62.6
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE--CCEE----EeeccccCCCCCccccEEEEEEe--C-C-CceEEEEE
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY--GLKW----VRTRTLVDNFNPKWNEQYTWEVY--D-P-CTVITLGV 450 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~~~----~~T~~~~~t~~P~wne~~~f~v~--~-~-~~~l~v~v 450 (789)
..+.|+|..+.++... ...+-||.+.+ |++. ..|+.+.-..+|.|||.+.|++. + | .+.|.|+|
T Consensus 217 ~~f~i~i~~~~~~~~~------~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti 290 (940)
T 2wxf_A 217 QPFSIELIEGRKVNAD------ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFAL 290 (940)
T ss_dssp SEEEEEEEEEECCCC---------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEE
T ss_pred CceEEEEEEecccCCC------CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEE
Confidence 4899999999998752 34677888765 6654 45555555778999999999886 2 3 67999999
Q ss_pred EeCCCC--C-----CCCCCCCCccEEEEEECcccc
Q 003882 451 FDNCHL--G-----GSGTKPDSRIGKVRIRLSTLE 478 (789)
Q Consensus 451 ~d~~~~--~-----~~~~~~d~~lG~~~i~l~~l~ 478 (789)
|+...- + .+.+..+..||.+.++|-+-.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~ 325 (940)
T 2wxf_A 291 YAVVEKAKKARSTKKKSKKADCPIAWANLMLFDYK 325 (940)
T ss_dssp EEEC----------------CEEEEEEEEESBCTT
T ss_pred EEecCCccCccccccccccccceEEEEeeeEECCc
Confidence 995321 1 001113459999999998843
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 789 | ||||
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 1e-19 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 1e-16 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 3e-06 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 7e-19 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 8e-10 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 5e-09 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 5e-18 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 2e-07 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 5e-07 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 1e-17 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 1e-09 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 8e-06 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 3e-17 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 3e-08 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 1e-04 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 5e-17 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 6e-17 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 3e-11 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 5e-17 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 5e-13 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 4e-10 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 1e-16 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-11 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 7e-08 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 2e-16 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 1e-11 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 5e-10 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 9e-16 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 6e-10 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 2e-07 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 3e-15 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 2e-12 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 4e-08 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 4e-15 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 4e-05 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 4e-04 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 5e-14 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 2e-08 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 1e-04 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 4e-13 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 1e-04 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 2e-12 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 6e-08 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 8e-04 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 1e-11 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 4e-10 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 1e-07 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 4e-11 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 3e-04 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 1e-10 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 1e-06 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 2e-09 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 2e-08 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 3e-06 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 8e-04 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.7 bits (206), Expect = 1e-19
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 8/128 (6%)
Query: 50 VEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSK 109
V+ + L V+V KA DL SG DP+ ++LGN + +T K NPEW +VF F
Sbjct: 2 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 61
Query: 110 EKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKV 169
+ I + EV V D + D++GKV + + P Y L+++ ++
Sbjct: 62 KDIHDVL-EVTVFDEDGDKPPDFLGKVAIPLLSIRDG-------QPNCYVLKNKDLEQAF 113
Query: 170 KGEVMLAV 177
KG + L +
Sbjct: 114 KGVIYLEM 121
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.8 bits (183), Expect = 1e-16
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 11/132 (8%)
Query: 378 QPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTW 437
+ +GIL+V +L A LL D G +D +C+ + G ++T T+ N NP+WN+ +T+
Sbjct: 3 KDVGILQVKVLKAADLLAA---DFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTF 59
Query: 438 EVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGV 497
+ D V+ + VFD KP +GKV I L ++ + + Y L +
Sbjct: 60 PIKDIHDVLEVTVFDEDGD-----KPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQA 112
Query: 498 KKMGELQLAVRF 509
K G + L +
Sbjct: 113 FK-GVIYLEMDL 123
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (105), Expect = 3e-06
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 17/132 (12%)
Query: 218 YLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPF 277
L+V V++A D+ D S F ++GN L+T + NP WN+ F +
Sbjct: 7 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTH-TVYKNLNPEWNKVFTFPIKDIH 65
Query: 278 EEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRH 337
+ V TV ++ + LG++ + L I + + L+ +K
Sbjct: 66 DVLEV-TVFDEDGDKPPDFLGKVAIPLLSIRDGQPN------CYVLK---------NKDL 109
Query: 338 ELKFSSRIHLRV 349
E F I+L +
Sbjct: 110 EQAFKGVIYLEM 121
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 80.9 bits (199), Expect = 7e-19
Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 13/124 (10%)
Query: 53 MFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFS-KEK 111
M L V V+KA+ + YV +K+ N K T + S P W+Q F F
Sbjct: 1 MSLLCVGVKKAKFDGAQ---EKFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRL 56
Query: 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR--RDDRKV 169
+EV+ + D +G V + + + +W L+ + D ++
Sbjct: 57 DLGLTVEVWNKGLI---WDTMVGTVWIPLRTIRQ---SNEEGPGEWLTLDSQAIMADSEI 110
Query: 170 KGEV 173
G
Sbjct: 111 CGTK 114
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.1 bits (132), Expect = 8e-10
Identities = 29/135 (21%), Positives = 45/135 (33%), Gaps = 9/135 (6%)
Query: 218 YLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPF 277
L V V +A+ +K +V +V N T R + P W +D
Sbjct: 3 LLCVGVKKAKFDGAQEKF---NTYVTLKVQNVKSTTIAV--RGSQPSWEQD-FMFEINRL 56
Query: 278 EEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRH 337
+ L + V NK D +G + + L I R + +W L+ A
Sbjct: 57 DLGLTVEVWNK-GLIWDTMVGTVWIPLRTI--RQSNEEGPGEWLTLDSQAIMADSEICGT 113
Query: 338 ELKFSSRIHLRVCLE 352
+ RI L E
Sbjct: 114 KDPTFHRILLDAHFE 128
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.8 bits (126), Expect = 5e-09
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 18/137 (13%)
Query: 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEV 439
+ +L VG+ A+ + Y K T V P W + + +E+
Sbjct: 1 MSLLCVGVKKAKFDGAQ------EKFNTYVTLKVQNVKSTTIA-VRGSQPSWEQDFMFEI 53
Query: 440 YDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEAD--RIYTHSYPLLVLNPSGV 497
+T+ V++ G D+ +G V I L T+ L+ +
Sbjct: 54 NRLDLGLTVEVWNK------GLIWDTMVGTVWIPLRTIRQSNEEGPGEWLT---LDSQAI 104
Query: 498 KKMGELQLAVRFTCLSL 514
E+ T +
Sbjct: 105 MADSEICGTKDPTFHRI 121
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 79.2 bits (194), Expect = 5e-18
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 22/127 (17%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL--------------GNYKGKTRHFEKKSNPEW 101
L + + +AR+L +G DP+V+V L YK +T++ +K NPEW
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 102 KQVFAF---SKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWY 158
Q + S E++ LEV V D + +D++G+V+ D++ P+WY
Sbjct: 80 NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN-----TPRWY 134
Query: 159 RLEDRRD 165
L+++ +
Sbjct: 135 PLKEQTE 141
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 48.7 bits (115), Expect = 2e-07
Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 26/128 (20%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCV--------------AKYGLKWVRTRTLVDN 426
G L + IL A+ L+P D G +D + RT+ + +
Sbjct: 18 GNLIIHILQARNLVPR---DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS 74
Query: 427 FNPKWNEQYTWEVYDPCT----VITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRI 482
NP+WN+ ++ + + V+D + +G+V I LS+
Sbjct: 75 LNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFS-----SNDFLGEVLIDLSSTSHLDN 129
Query: 483 YTHSYPLL 490
YPL
Sbjct: 130 TPRWYPLK 137
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.6 bits (112), Expect = 5e-07
Identities = 22/124 (17%), Positives = 54/124 (43%), Gaps = 22/124 (17%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQV--------------GNQVLKTKLCPTRTTNPL 264
L +++++A+++ P D + FV+ + +TK ++ NP
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ-KSLNPE 78
Query: 265 WNEDLIFV---AAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWF 321
WN+ +I+ + ++ L +TV + + ++ LG + + L+ H +W+
Sbjct: 79 WNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLS----STSHLDNTPRWY 134
Query: 322 NLEK 325
L++
Sbjct: 135 PLKE 138
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 77.8 bits (191), Expect = 1e-17
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 16/122 (13%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAF--S 108
L V V KAR LP + VSG DPYV+V L + K KT + N + ++F F
Sbjct: 17 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 76
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVP--------PDSPLAPQWYRL 160
E ++ +E V D E R++ IG++V + P +A +W+ L
Sbjct: 77 CESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIA-KWHML 135
Query: 161 ED 162
D
Sbjct: 136 CD 137
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 55.1 bits (132), Expect = 1e-09
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 22/137 (16%)
Query: 207 RSKVYVSPKLWY------LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTR- 259
R ++ VS L Y L V V++A+ + D S L +V+ + + + T
Sbjct: 1 RGELLVS--LCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHV 58
Query: 260 ---TTNPLWNEDLIF--VAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDH- 313
T N ++NE +F E + V + +++E +GRL L H
Sbjct: 59 KKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHW 118
Query: 314 -------RPVHSKWFNL 323
R +KW L
Sbjct: 119 KEICDFPRRQIAKWHML 135
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.9 bits (103), Expect = 8e-06
Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 18/118 (15%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKW-----VRTRTLVDNFNPKWNEQY 435
L V +L A+ L D G +D Y +T N +NE +
Sbjct: 15 NTLTVVVLKARHLPKS---DVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELF 71
Query: 436 TWEVYDP---CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490
+++ + V D+ + IG++ + + + H +
Sbjct: 72 VFDIPCESLEEISVEFLVLDSERGS-----RNEVIGRLVLGATAEGSG--GGHWKEIC 122
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 77.2 bits (189), Expect = 3e-17
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 21/137 (15%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKG-----KTRHFEKKSNPEWKQVFAF--S 108
L V + +A++L V G DPYV++ L KT + NP + + F+F
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRV--------PPDSPLAPQWYRL 160
E+IQ + V V D + +G++D IGKV N + P P+A QW+ L
Sbjct: 87 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 145
Query: 161 EDRRDDRKVKGEVMLAV 177
+ + + MLAV
Sbjct: 146 QVEE-----EVDAMLAV 157
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.7 bits (123), Expect = 3e-08
Identities = 31/143 (21%), Positives = 59/143 (41%), Gaps = 18/143 (12%)
Query: 200 GEGVFNIRSKVYVS----PKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKL 255
G G+ + S P L V ++EA++++ +D L +V+ + + K
Sbjct: 4 GGGILEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKK 63
Query: 256 CPTR----TTNPLWNEDLIFV--AAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIER 309
T T NP +NE F + + Q+V+TV + K++ +G++ + N
Sbjct: 64 KKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGA 123
Query: 310 RLDH--------RPVHSKWFNLE 324
L H R ++W L+
Sbjct: 124 ELRHWSDMLANPRRPIAQWHTLQ 146
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.3 bits (96), Expect = 1e-04
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 12/115 (10%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL-----KWVRTRTLVDNFNPKWNEQY 435
G L V IL A+ +K D G +D Y K +T + NP +NE +
Sbjct: 25 GKLTVVILEAKN---LKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESF 81
Query: 436 TWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490
++EV V G + IGKV + ++ A+ H +L
Sbjct: 82 SFEVPFEQIQKVQVVVTVLDYDKIG--KNDAIGKVFVGYNSTGAE--LRHWSDML 132
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 75.9 bits (186), Expect = 5e-17
Identities = 29/135 (21%), Positives = 52/135 (38%), Gaps = 12/135 (8%)
Query: 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRT-LVDNFNPKWNEQY 435
P G LEV ++SA+GL D D Y + ++ P+WNE +
Sbjct: 6 SGPHGTLEVVLVSAKGLEDA---DFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETF 62
Query: 436 TWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPS 495
+ V + T + +FD D +G+ I L + + + +V +
Sbjct: 63 IFTVSEGTTELKAKIFDKDVGT-----EDDAVGEATIPLEPVFVEGSIPPTAYNVVKDE- 116
Query: 496 GVKKMGELQLAVRFT 510
+ GE+ +A+ F
Sbjct: 117 --EYKGEIWVALSFK 129
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 75.9 bits (186), Expect = 6e-17
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKS-NPEWKQVFAFSKEKIQS 114
L V + A+ L + DPYV++ K+ E PEW + F F+ + +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE-GT 70
Query: 115 SVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVM 174
+ L+ + D+++ DD +G+ + V + + P Y + D + KGE+
Sbjct: 71 TELKAKIFDKDVGTEDDAVGEATIPLEPVFV----EGSIPPTAYNV---VKDEEYKGEIW 123
Query: 175 LAV 177
+A+
Sbjct: 124 VAL 126
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 59.4 bits (143), Expect = 3e-11
Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 17/143 (11%)
Query: 208 SKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNE 267
S P L V ++ A+ +E D +V+ Q K+ + T P WNE
Sbjct: 2 SSGSSGPH-GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNE 60
Query: 268 DLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFG 327
IF +E +L + +K +D+ +G + L + + +N+ K
Sbjct: 61 TFIFTVSEG-TTELKAKIFDKDVGTEDDAVGEATIPLEPV---FVEGSIPPTAYNVVK-- 114
Query: 328 FGALELDKRHELKFSSRIHLRVC 350
+ ++ I + +
Sbjct: 115 ----------DEEYKGEIWVALS 127
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 75.9 bits (186), Expect = 5e-17
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKG-----KTRHFEKKSNPEWKQVFAFS-K 109
L V V A++L +G DPYV++KL KT+ + NPEW + F F K
Sbjct: 17 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 76
Query: 110 EKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRK 168
E + L V + D ++ R+D++G + F ++E+ W++L + +
Sbjct: 77 ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG------VDGWFKLLSQEEGEY 129
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 64.7 bits (157), Expect = 5e-13
Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-----GLKWVRTRTLVDNFNPKWNEQY 435
+L V + A+ L+PM D G +D Y K +T+T+ + NP+WNE +
Sbjct: 15 EVLIVVVRDAKNLVPM---DPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETF 71
Query: 436 TWEVYDP--CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490
+++ + +++ ++D + +G + +S L+ + + LL
Sbjct: 72 RFQLKESDKDRRLSVEIWDWDLTS-----RNDFMGSLSFGISELQKAGV-DGWFKLL 122
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 56.2 bits (135), Expect = 4e-10
Identities = 26/126 (20%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 207 RSKVYVSPKLW--YLRVNVIEAQDVEPLDKSQLPQAFVEAQV-----GNQVLKTKLCPTR 259
R ++Y+ + L V V +A+++ P+D + L +V+ ++ KTK
Sbjct: 3 RGRIYIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTK-TIKC 61
Query: 260 TTNPLWNEDLIFVAAEPFEEQ-LVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHS 318
+ NP WNE F E +++ L + + + ++++ +G L ++ +++
Sbjct: 62 SLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-----GVD 116
Query: 319 KWFNLE 324
WF L
Sbjct: 117 GWFKLL 122
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 75.2 bits (184), Expect = 1e-16
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 12/120 (10%)
Query: 47 YDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKL---GNYKGKTRHFEKKSNPEWKQ 103
YD L V + +A +LP + G+ DPYV+V L K +T+ K NP + +
Sbjct: 29 YDFQNNQ--LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 86
Query: 104 VFAF--SKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161
F F ++ L + V D + + D IG+ MN V + +W L+
Sbjct: 87 QFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF-----GHVTEEWRDLQ 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 60.2 bits (145), Expect = 2e-11
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 14/116 (12%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYC---VAKYGLKWVRTRTLVDNFNPKWNEQYTW 437
L VGI+ A L + D GT+D Y + K T+ NP +NEQ+T+
Sbjct: 34 NQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTF 90
Query: 438 EVYDPC---TVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490
+V + + V+D IG+ ++ ++T++ + L
Sbjct: 91 KVPYSELGGKTLVMAVYDFDRFS-----KHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.1 bits (119), Expect = 7e-08
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQV---GNQVLKTKLCPTRTTNPLWNEDLIF--VA 273
L V +I+A ++ LD +V+ + + +TK+ +T NP++NE F
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVFNEQFTFKVPY 94
Query: 274 AEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLE 324
+E + LV+ V + +K + +G ++ +N +D V +W +L+
Sbjct: 95 SELGGKTLVMAVYDFDRFSKHDIIGEFKVPMN----TVDFGHVTEEWRDLQ 141
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.0 bits (181), Expect = 2e-16
Identities = 26/125 (20%), Positives = 55/125 (44%), Gaps = 18/125 (14%)
Query: 47 YDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKL-----GNYKGKTRHFEKKSNPEW 101
+D V L V + A+DLP+ +PYV++ K +T+ +K P+W
Sbjct: 9 FDKVGH--QLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKW 66
Query: 102 KQVFAF---SKEKIQSSVLEVFV--RDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQ 156
Q F + + + + +LE+ + + R +++G+++ ++ P
Sbjct: 67 NQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA------LLDDEPH 120
Query: 157 WYRLE 161
WY+L+
Sbjct: 121 WYKLQ 125
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.1 bits (145), Expect = 1e-11
Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 16/118 (13%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVA-----KYGLKWVRTRTLVDNFNPKWNEQY 435
L V IL A+ L + + Y + RT+T+ PKWN+ +
Sbjct: 14 HQLIVTILGAKDLPSR---EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF 70
Query: 436 TWEVYDPCT----VITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPL 489
+ ++ + ++D + +G++ I L T D H Y L
Sbjct: 71 IYSPVHRREFRERMLEITLWDQARVREE---ESEFLGEILIELETALLDDE-PHWYKL 124
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.9 bits (134), Expect = 5e-10
Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 20/125 (16%)
Query: 215 KLWY------LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTR----TTNPL 264
KLW+ L V ++ A+D+ + + +V+ T+ T P
Sbjct: 6 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK 65
Query: 265 WNEDLIFVAAEPFEEQ---LVLTV--ENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSK 319
WN+ I+ E + L +T+ + +V + E LG + + L LD P
Sbjct: 66 WNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETAL--LDDEP---H 120
Query: 320 WFNLE 324
W+ L+
Sbjct: 121 WYKLQ 125
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.5 bits (177), Expect = 9e-16
Identities = 21/122 (17%), Positives = 41/122 (33%), Gaps = 2/122 (1%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSS 115
L + V A+ PYVEV + KT ++P+WKQ +
Sbjct: 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPVSKL 67
Query: 116 VLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVML 175
V+ + + D +G D+ E +L ++ + G++ +
Sbjct: 68 HFRVW--SHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSI 125
Query: 176 AV 177
+
Sbjct: 126 CL 127
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.9 bits (134), Expect = 6e-10
Identities = 17/131 (12%), Positives = 43/131 (32%), Gaps = 13/131 (9%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVY 440
L++ ++SA+ + + Y + +T + +PKW + T V
Sbjct: 6 SQLQITVISAKLK---ENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT 62
Query: 441 DPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTL---EADRIYTHSYPLLVLNP-SG 496
+ V+ + L D +G + + ++ L +
Sbjct: 63 PVSK-LHFRVWSHQTLK-----SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEP 116
Query: 497 VKKMGELQLAV 507
+ +G+L + +
Sbjct: 117 TETIGDLSICL 127
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (115), Expect = 2e-07
Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 13/135 (9%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWNEDLIFVAAEPFE 278
L++ VI A+ E P +VE V Q KT+ C T +P W + L + +
Sbjct: 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCN-NTNSPKWKQPLTVIVTPVSK 66
Query: 279 EQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALELDKRHE 338
+ + D LG L + + + + + L+ L DK
Sbjct: 67 LHFRVWSHQTLK--SDVLLGTAALDIYETLKSNNMK-LEEVVVTLQ------LGGDKEPT 117
Query: 339 LKFSSRIHLRVCLEG 353
+ L +CL+G
Sbjct: 118 ---ETIGDLSICLDG 129
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.5 bits (172), Expect = 3e-15
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 15/126 (11%)
Query: 56 LYVRVEKARDLP---TNPVSGSCDPYVEVKLG---NYKGKTRHFEKKSNPEWKQVFAFSK 109
V V +A + + + DPYVE+ + + + +TRHF NP W + F F
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 110 EKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKV 169
+ Q +VLE+ + D D+ +G F ++ + + + ++
Sbjct: 65 DPNQENVLEITLMDANY-VMDETLGTATFTVSSMKVGEKKE-----VPFIFNQV---TEM 115
Query: 170 KGEVML 175
E+ L
Sbjct: 116 VLEMSL 121
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.4 bits (151), Expect = 2e-12
Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 18/135 (13%)
Query: 383 LEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG---LKWVRTRTLVDNFNPKWNEQYTWEV 439
V +L A + D T D Y RTR ++ NP WNE + + +
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 440 YDPCT-VITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVK 498
V+ + + D ++ D +G +S+++ +
Sbjct: 65 DPNQENVLEITLMDANYVM------DETLGTATFTVSSMKVGEKKEVPFIF--------N 110
Query: 499 KMGELQLAVRFTCLS 513
++ E+ L + S
Sbjct: 111 QVTEMVLEMSLEVAS 125
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.5 bits (120), Expect = 4e-08
Identities = 25/120 (20%), Positives = 39/120 (32%), Gaps = 10/120 (8%)
Query: 219 LRVNVIEAQDVEPL---DKSQLPQAFVEAQVGNQVLKTKLCPT--RTTNPLWNEDLIFVA 273
V V+ A V D P +VE + K NP+WNE F+
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 274 AEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFGFGALEL 333
E L +T+ + DE LG +++ + F + LE+
Sbjct: 65 DPNQENVLEITLMDA-NYVMDETLGTATFTVS----SMKVGEKKEVPFIFNQVTEMVLEM 119
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 70.4 bits (171), Expect = 4e-15
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVE---VKLGNYKGKTRHFEKKSNPEWKQVFAF--SKE 110
L VR+ +A DLP +G DPYV+ + K +T+ K NP + + F F
Sbjct: 20 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 79
Query: 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLED 162
++ L V D + R D IG+VV D PPD PL W + +
Sbjct: 80 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDILE 128
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.9 bits (97), Expect = 4e-05
Identities = 23/114 (20%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 219 LRVNVIEAQDVEPLDKSQLPQAFVEAQV---GNQVLKTKLCPTRTTNPLWNEDLIFV--A 273
L V +++A D+ D + +V+ + + +TK+ +T NP++NE F
Sbjct: 20 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHR-KTLNPIFNETFQFSVPL 78
Query: 274 AEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKFG 327
AE + +L +V + ++ + +G++ L + P W ++ + G
Sbjct: 79 AELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQP--PDRPLWRDILEGG 130
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.2 bits (90), Expect = 4e-04
Identities = 20/118 (16%), Positives = 34/118 (28%), Gaps = 10/118 (8%)
Query: 378 QPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTW 437
L V IL A L + + K +T+ NP +NE + +
Sbjct: 15 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQF 74
Query: 438 EVYDPC---TVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIY--THSYPLL 490
V + V+D IG+V + A++ +L
Sbjct: 75 SVPLAELAQRKLHFSVYDFDRFS-----RHDLIGQVVLDNLLELAEQPPDRPLWRDIL 127
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 67.5 bits (164), Expect = 5e-14
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 16/122 (13%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAF--S 108
L V + + L +G DP+V++ L K KT+ +K NPE+ + F +
Sbjct: 17 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 76
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVP--------PDSPLAPQWYRL 160
+ L++ V D +I +DYIG ++ R+ D + +W++L
Sbjct: 77 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE-RWHQL 135
Query: 161 ED 162
++
Sbjct: 136 QN 137
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.8 bits (123), Expect = 2e-08
Identities = 26/136 (19%), Positives = 54/136 (39%), Gaps = 18/136 (13%)
Query: 207 RSKVYVS----PKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPTR--- 259
R K+ VS + L V +I + +D + FV+ + + K T+
Sbjct: 1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK 60
Query: 260 -TTNPLWNEDLIF--VAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDH--- 313
T NP +NE+ + ++ ++ L ++V + ++ +G +L ++ RL H
Sbjct: 61 KTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYE 120
Query: 314 -----RPVHSKWFNLE 324
+W L+
Sbjct: 121 CLKNKDKKIERWHQLQ 136
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.6 bits (94), Expect = 1e-04
Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 12/115 (10%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVA-----KYGLKWVRTRTLVDNFNPKWNEQY 435
G L VGI+ L M D G +D + +T+ NP++NE++
Sbjct: 15 GGLIVGIIRCVHLAAM---DANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEF 71
Query: 436 TWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490
+++ + + D K + IG ++ +S H Y L
Sbjct: 72 FYDI--KHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERL--KHWYECL 122
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 65.2 bits (158), Expect = 4e-13
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 17/125 (13%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-----KGKTRHFEKKSNPEWKQVFAF--S 108
L V + KA +L ++G DPYV+ L + K KT + NP + + F +
Sbjct: 22 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 81
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRV---------PPDSPLAPQWYR 159
E +++ L + V D + +G ++ IG P P+ W++
Sbjct: 82 PESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVE-HWHQ 140
Query: 160 LEDRR 164
L + +
Sbjct: 141 LVEEK 145
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.0 bits (95), Expect = 1e-04
Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 15/125 (12%)
Query: 214 PKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVGNQVLKTKLCPT----RTTNPLWNEDL 269
P L V +I+A +++ +D + +V+A + ++ + K T T NP +NE L
Sbjct: 17 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEAL 76
Query: 270 IF--VAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVI-ERRLDH--------RPVHS 318
+F L + V + +E +G R+ +H R
Sbjct: 77 VFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVE 136
Query: 319 KWFNL 323
W L
Sbjct: 137 HWHQL 141
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.8 bits (152), Expect = 2e-12
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 56 LYVRVEKARDLP-TNPVSGSCDPYVEVKL---GNYKGKTRHFEKKSNPEWKQVFAF---S 108
V +++AR LP + S + DPY+++ + +K KTR K +P + + F F
Sbjct: 24 FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIP 83
Query: 109 KEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVP 144
+IQ L + + RDD IG+V+ ++ +
Sbjct: 84 YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE 119
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (119), Expect = 6e-08
Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 14/122 (11%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY---GLKWVRTRTLVDNFNPKWNEQYTW 437
V I A+GL M + T+D Y V+TR L +P ++E +T+
Sbjct: 22 KAFVVNIKEARGLPAMD--EQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF 79
Query: 438 EVYDP----CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLN 493
+ + D IG+V I LS +E ++
Sbjct: 80 YGIPYTQIQELALHFTILSFDRFS-----RDDIIGEVLIPLSGIELSEGKMLMNREIISG 134
Query: 494 PS 495
PS
Sbjct: 135 PS 136
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (88), Expect = 8e-04
Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 13/113 (11%)
Query: 219 LRVNVIEAQDVEPLDK-SQLPQAFVEAQV---GNQVLKTKLCPTRTTNPLWNEDLIFV-- 272
VN+ EA+ + +D+ S +++ + +KT++ +T +P ++E F
Sbjct: 24 FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLR-KTLDPAFDETFTFYGI 82
Query: 273 -AAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLE 324
+ E L T+ + ++D+ +G + + L+ IE L + N E
Sbjct: 83 PYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE--LSEGKM---LMNRE 130
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 60.7 bits (146), Expect = 1e-11
Identities = 27/141 (19%), Positives = 52/141 (36%), Gaps = 26/141 (18%)
Query: 53 MF--YLYVRVEKARDLP-----------TNPVSGSCDPYVEVKLGNYK-GKTRHFEKKSN 98
+F L +++ +A L P + DPY+ + + + + G+T +K ++
Sbjct: 3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNS 62
Query: 99 PEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWY 158
P W F + L VF +G DD++ E+ S W
Sbjct: 63 PAWHDEFVTDVCNGRKIELAVFHDAP--IGYDDFVANCTIQFEELLQN---GSRHFEDWI 117
Query: 159 RLEDRRDDRKVKGEVMLAVWI 179
LE +G+V + + +
Sbjct: 118 DLEP-------EGKVYVIIDL 131
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 56.4 bits (135), Expect = 4e-10
Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 25/141 (17%)
Query: 381 GILEVGILSAQGLLPMKT--------RDGRGTTDAYCVAKYG-LKWVRTRTLVDNFNPKW 431
G+L++ I A L P R D Y + +T T +P W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 432 NEQYTWEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTL--EADRIYTHSYPL 489
++++ +V + I L VF + +G D + I+ L R + L
Sbjct: 66 HDEFVTDVCNGRK-IELAVFHDAPIG-----YDDFVANCTIQFEELLQNGSRHFEDWIDL 119
Query: 490 LVLNPSGVKKMGELQLAVRFT 510
+ G++ + + +
Sbjct: 120 --------EPEGKVYVIIDLS 132
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 49.1 bits (116), Expect = 1e-07
Identities = 18/147 (12%), Positives = 49/147 (33%), Gaps = 31/147 (21%)
Query: 218 YLRVNVIEAQDVEPLD-----------KSQLPQAFVEAQVGNQVLKTKLCPTRTTNPLWN 266
L++ + EA ++P ++ L ++ V + + +T +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 267 EDLIFVAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKF 326
++ + ++ L V + D+ + + + + W +LE
Sbjct: 67 DEFVTDV--CNGRKIELAVFHDAPIGYDDFVANCTIQFEELLQN--GSRHFEDWIDLEPE 122
Query: 327 GFGALELDKRHELKFSSRIHLRVCLEG 353
G ++++ + L G
Sbjct: 123 G----------------KVYVIIDLSG 133
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.6 bits (141), Expect = 4e-11
Identities = 18/123 (14%), Positives = 43/123 (34%), Gaps = 19/123 (15%)
Query: 62 KARDL-PTNPVSGSCDPYVEVKLGNY-----KGKTRHFEKKSNPEWKQVFAFSKEKIQSS 115
+ +L + P+ VK+ + PEWK F + +
Sbjct: 10 NSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGR-- 67
Query: 116 VLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVML 175
V+++ + +D + +V ++ + R ++ A W L+ + +V++
Sbjct: 68 VIQIVLMRA----AEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQPQ-------AKVLM 116
Query: 176 AVW 178
V
Sbjct: 117 CVQ 119
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.0 bits (90), Expect = 3e-04
Identities = 12/133 (9%), Positives = 36/133 (27%), Gaps = 21/133 (15%)
Query: 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-----GLKWVRTRTLVDNFNPKWNEQYT 436
L + ++ L ++ D + +C K + P+W +
Sbjct: 4 FLRISF-NSYELGSLQAEDD--ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFD 60
Query: 437 WEVYDPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSG 496
+ VI + + + +G + + + L
Sbjct: 61 AHI-YEGRVIQIVLMRA----AEDPMSEVTVGVSVLAERCKKNNGKAEFWLDL------- 108
Query: 497 VKKMGELQLAVRF 509
+ ++ + V++
Sbjct: 109 -QPQAKVLMCVQY 120
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.6 bits (138), Expect = 1e-10
Identities = 20/114 (17%), Positives = 47/114 (41%), Gaps = 14/114 (12%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKG----KTRHFEKKSNPEWKQVFAF--SK 109
L+V +A + G CD YV+ + N G +T +++ + W++ ++
Sbjct: 28 LFVTRLEAVTSNHD---GGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAE 84
Query: 110 EKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR 163
E++ ++ L + +R + R G++ ++ + QW L+
Sbjct: 85 EELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA-----QWGELKTS 133
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.4 bits (109), Expect = 1e-06
Identities = 21/122 (17%), Positives = 30/122 (24%), Gaps = 18/122 (14%)
Query: 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY----GLKWVRTRTLVDNFNPKWNEQYT 436
L V L A + G D Y G +T + W E
Sbjct: 26 AELFVTRLEAVTS------NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLV 79
Query: 437 WEVY---DPCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLN 493
+ P +TL + S G++R+ L L
Sbjct: 80 LPLAEEELPTATLTLTLRTCDRFS-----RHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134
Query: 494 PS 495
PS
Sbjct: 135 PS 136
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 54.4 bits (130), Expect = 2e-09
Identities = 24/132 (18%), Positives = 43/132 (32%), Gaps = 16/132 (12%)
Query: 56 LYVRVEKARDLPTNP--VSGSCDPYVE-----VKLGNYKGKTRHFEKKS-NPEWKQVFAF 107
L VR+ + LP + DP V V +T NP W F F
Sbjct: 6 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65
Query: 108 SKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDR 167
+++ V D + ++D+IG+ N + + L + D+
Sbjct: 66 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQG--------YRHVHLLSKNGDQ 117
Query: 168 KVKGEVMLAVWI 179
+ + + I
Sbjct: 118 HPSATLFVKISI 129
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.3 bits (122), Expect = 2e-08
Identities = 21/108 (19%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 219 LRVNVIEAQDVEPL--DKSQLPQAFVEAQV-----GNQVLKTKLCPTRTTNPLWNEDLIF 271
LRV +I Q + + +K+ + V ++ +T + NP W+ + F
Sbjct: 6 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65
Query: 272 VAAEPFEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERRLDHRPVHSK 319
P + VE+ + +K++ +G+ + N +++ H + SK
Sbjct: 66 EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLSK 113
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.1 bits (106), Expect = 3e-06
Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 13/100 (13%)
Query: 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY---GLKWVRTRTLV---DNFNPKWNEQY 435
L V I+S Q L P ++ D + + G +T V + FNP+W+ ++
Sbjct: 5 RLRVRIISGQQL-PKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEF 63
Query: 436 TWEVYDPCT-VITLGVFDNCHLGGSGTKPDSRIGKVRIRL 474
+EV P ++ V D + IG+ I
Sbjct: 64 EFEVTVPDLALVRFMVEDYDSSS-----KNDFIGQSTIPW 98
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (88), Expect = 8e-04
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 18/99 (18%)
Query: 56 LYVRVEKARDLPTNPVSGSCDPYVEVKL------GNYKGKTRHFEKKS--NPEWKQ--VF 105
L + V + L S YVEV+L + +T+ + NP WK+
Sbjct: 3 LSITVISGQFLS----ERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58
Query: 106 AFSKEKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVP 144
+ + L V V + + ++G + +N +
Sbjct: 59 FEKILMPELASLRVAVMEE----GNKFLGHRIIPINALN 93
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 789 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.87 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.87 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.83 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.81 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.81 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.81 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.8 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.79 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.79 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.79 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.79 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.78 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.77 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.77 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.77 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.76 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.76 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.75 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.75 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.74 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.73 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.73 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.73 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.72 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.72 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.72 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.7 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.69 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.67 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.67 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.67 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.65 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.64 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.64 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.6 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.56 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.54 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.51 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.47 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.28 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 93.37 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 93.18 | |
| d2yrba1 | 142 | Fantom {Human (Homo sapiens) [TaxId: 9606]} | 88.07 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2.3e-22 Score=181.01 Aligned_cols=122 Identities=32% Similarity=0.470 Sum_probs=110.2
Q ss_pred CceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCC
Q 003882 51 EQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRD 130 (789)
Q Consensus 51 ~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d 130 (789)
+++|.|.|+|++|+||+.++..|.+||||++++++++++|+++++|.||.|||+|.|.+.+. ...|.|+|||++.+++|
T Consensus 3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~-~~~L~i~V~d~~~~~~d 81 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI-HDVLEVTVFDEDGDKPP 81 (126)
T ss_dssp CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT-TCEEEEEEEEEETTEEE
T ss_pred CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEecc-CceeEEEEEEccCCcCc
Confidence 36799999999999999999999999999999999999999999999999999999999876 47899999999999899
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 131 DYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 131 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
++||++.|+|.++..+. . .|+.|......+...|+|++++.+.
T Consensus 82 ~~lG~~~i~l~~l~~~~--~-----~~~~l~~~~~~~~~~G~i~l~~~~i 124 (126)
T d2ep6a1 82 DFLGKVAIPLLSIRDGQ--P-----NCYVLKNKDLEQAFKGVIYLEMDLI 124 (126)
T ss_dssp EECCBCEEEGGGCCSSC--C-----EECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred ceEEEEEEEHHHCCCCC--c-----eEEEccccCCCCceeEEEEEEEEEE
Confidence 99999999999997653 2 8999988776666789999998764
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=3.1e-22 Score=180.16 Aligned_cols=123 Identities=28% Similarity=0.496 Sum_probs=108.1
Q ss_pred CCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCC
Q 003882 378 QPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLG 457 (789)
Q Consensus 378 ~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~ 457 (789)
+++|.|+|+|++|+||+.++ ..|.+||||++++++++++|+++++|.||.|||.|.|.+.++...|.|+|||++..+
T Consensus 3 ~~~G~L~V~v~~A~~L~~~d---~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~ 79 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAAD---FSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDK 79 (126)
T ss_dssp CCSEEEEEEEEEEESCCCSS---SSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTE
T ss_pred CccEEEEEEEEEeECCCCCC---CCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCc
Confidence 46799999999999999874 458899999999999999999999999999999999999988899999999998875
Q ss_pred CCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEee
Q 003882 458 GSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTC 511 (789)
Q Consensus 458 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 511 (789)
.|++||++.|+|+++..+. ..|+.|......+. .+|+|+|++.+.+
T Consensus 80 -----~d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~-~~G~i~l~~~~i~ 125 (126)
T d2ep6a1 80 -----PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQA-FKGVIYLEMDLIY 125 (126)
T ss_dssp -----EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSC-CSSEEEEEEEEEE
T ss_pred -----CcceEEEEEEEHHHCCCCC--ceEEEccccCCCCc-eeEEEEEEEEEEE
Confidence 7899999999999998765 57898876544433 4599999998865
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.83 E-value=2.2e-20 Score=170.46 Aligned_cols=124 Identities=23% Similarity=0.322 Sum_probs=107.3
Q ss_pred CCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeecccc-CCCCCccccEEEEEEeCCCceEEEEEEeCCC
Q 003882 377 KQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLV-DNFNPKWNEQYTWEVYDPCTVITLGVFDNCH 455 (789)
Q Consensus 377 ~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~-~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~ 455 (789)
..+.|.|+|+|++|+||+.++ ..|.+||||+++++++..+|++++ ++.||.|||.|.|.+.++...|.|+|||++.
T Consensus 6 ~~p~G~L~V~v~~a~~L~~~d---~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~ 82 (136)
T d1wfja_ 6 SGPHGTLEVVLVSAKGLEDAD---FLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDV 82 (136)
T ss_dssp CCCEEEEEEEEEEEEECSSCC---SSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSS
T ss_pred CCCcEEEEEEEEEeeCCCCCC---CCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecC
Confidence 356799999999999999874 458999999999999999999987 4899999999999999888889999999998
Q ss_pred CCCCCCCCCCccEEEEEECccccc-CceEeeeEeeeecCCCCCccceEEEEEEEEeec
Q 003882 456 LGGSGTKPDSRIGKVRIRLSTLEA-DRIYTHSYPLLVLNPSGVKKMGELQLAVRFTCL 512 (789)
Q Consensus 456 ~~~~~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~ 512 (789)
++ +|++||++.|+|.++.. +.....|+++.. +.+..|+|+|++.|.|.
T Consensus 83 ~~-----~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~----~~~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 83 GT-----EDDAVGEATIPLEPVFVEGSIPPTAYNVVK----DEEYKGEIWVALSFKPS 131 (136)
T ss_dssp CT-----TTCCSEEEEEESHHHHHHSEEEEEEEEEEE----TTEEEEEEEEEEEEEEC
T ss_pred CC-----CCCEEEEEEEEhHHhcccCCcCcEEEEecC----CCccCEEEEEEEEEEeC
Confidence 76 88999999999999754 445578999863 23457999999999874
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.81 E-value=4.9e-20 Score=169.46 Aligned_cols=118 Identities=27% Similarity=0.403 Sum_probs=104.6
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC---CeeeeeccccCCCCCeeccEEEEEccC--C
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLG---NYKGKTRHFEKKSNPEWKQVFAFSKEK--I 112 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~~~~--~ 112 (789)
.|..++++.|+..+ +.|.|+|++|+||+.++..|.+||||+|++. .+.++|+++++|.||+|||+|.|.+.. .
T Consensus 20 ~G~l~~sl~y~~~~--~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l 97 (143)
T d1rsya_ 20 LGKLQYSLDYDFQN--NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97 (143)
T ss_dssp CCEEEEEEEEETTT--TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHH
T ss_pred ceEEEEEEEEeCCC--CEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeecc
Confidence 45678999999988 8999999999999999989999999999994 356799999999999999999998743 3
Q ss_pred CCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEccc
Q 003882 113 QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLED 162 (789)
Q Consensus 113 ~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 162 (789)
....|.|+|||++.++++++||++.|+|.++..+...+ +||+|+.
T Consensus 98 ~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~-----~W~~L~s 142 (143)
T d1rsya_ 98 GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE-----EWRDLQS 142 (143)
T ss_dssp TTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEE-----EEEECBC
T ss_pred CCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCc-----cEEeCCC
Confidence 46789999999999999999999999999998765544 8999974
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.81 E-value=4.3e-20 Score=168.43 Aligned_cols=123 Identities=22% Similarity=0.353 Sum_probs=105.7
Q ss_pred ceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeecccc-CCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCC
Q 003882 52 QMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFE-KKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRD 130 (789)
Q Consensus 52 ~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~-~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d 130 (789)
+.|.|.|+|++|++|+..+..|++||||+++++++..+|++++ ++.||+|||+|.|.+.+. ...|.|+|||++.+++|
T Consensus 8 p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~-~~~L~v~V~d~d~~~~d 86 (136)
T d1wfja_ 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-TTELKAKIFDKDVGTED 86 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS-CCEEEEEECCSSSCTTT
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCc-cceEEEEEEEecCCCCC
Confidence 4599999999999999999999999999999999998999887 588999999999999875 46799999999999999
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEeec
Q 003882 131 DYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGTQ 182 (789)
Q Consensus 131 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~~ 182 (789)
++||++.|+|.++..... ....|+.|... ++..|+|++++.|.+.
T Consensus 87 ~~iG~~~i~L~~l~~~~~----~~~~~~~l~~~---~~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 87 DAVGEATIPLEPVFVEGS----IPPTAYNVVKD---EEYKGEIWVALSFKPS 131 (136)
T ss_dssp CCSEEEEEESHHHHHHSE----EEEEEEEEEET---TEEEEEEEEEEEEEEC
T ss_pred CEEEEEEEEhHHhcccCC----cCcEEEEecCC---CccCEEEEEEEEEEeC
Confidence 999999999999865422 12379998653 2568999999999754
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.81 E-value=7.2e-20 Score=165.29 Aligned_cols=120 Identities=31% Similarity=0.398 Sum_probs=101.3
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEccC--CC
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFSKEK--IQ 113 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~~~~--~~ 113 (789)
|...+++.|+... ++|.|+|++|+||+.++..|.+||||++++.+ ++++|+++++|.||+|||+|.|.+.. ..
T Consensus 5 G~l~~sl~y~~~~--~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~ 82 (130)
T d1dqva1 5 GRISFALRYLYGS--DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELA 82 (130)
T ss_dssp CEEEEEEECCSSS--CEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGS
T ss_pred EEEEEEEEEECCC--CEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcC
Confidence 4678999999987 99999999999999999999999999999954 56899999999999999999999743 34
Q ss_pred CceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccC
Q 003882 114 SSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR 163 (789)
Q Consensus 114 ~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 163 (789)
...|.|+|||++.+++|++||++.|++.....+...+ .+.||+|++.
T Consensus 83 ~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~---~~~W~~L~~~ 129 (130)
T d1dqva1 83 QRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPD---RPLWRDILEG 129 (130)
T ss_dssp SCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSS---CCCCEECBCC
T ss_pred CCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCC---CcEEEecccC
Confidence 6789999999999999999999999865444332222 2379999864
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=2.5e-20 Score=171.59 Aligned_cols=117 Identities=30% Similarity=0.548 Sum_probs=101.6
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC--------------eeeeeccccCCCCCeeccE
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN--------------YKGKTRHFEKKSNPEWKQV 104 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~--------------~~~~T~~~~~t~nP~wne~ 104 (789)
|..++++.|+. +.|.|+|++|+||+.++..|.+||||+|++.+ +++||+++++|.||.|||+
T Consensus 7 G~l~lsl~y~~----~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~ 82 (142)
T d1rh8a_ 7 GEIQLQINYDL----GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQT 82 (142)
T ss_dssp CEEEEEEEEET----TEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEE
T ss_pred eEEEEEEEEeC----CEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEE
Confidence 46789999964 78999999999999999999999999999953 2358999999999999999
Q ss_pred EEEEc---cCCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 105 FAFSK---EKIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 105 f~f~~---~~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
|.|.. .++....|.|+|||++.++++++||++.|+|.++..+.... .||+|+++.
T Consensus 83 f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~-----~W~~L~~~~ 140 (142)
T d1rh8a_ 83 VIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTP-----RWYPLKEQT 140 (142)
T ss_dssp EEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCC-----EEEECBCCC
T ss_pred EEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCce-----EEEECcCcC
Confidence 99974 23356789999999999999999999999999998776554 999999875
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.79 E-value=4.3e-19 Score=161.22 Aligned_cols=119 Identities=21% Similarity=0.310 Sum_probs=102.4
Q ss_pred cEEEEEEEEccCCCCCccC--------CCCCCcCcEEEEEECCEE-EeeccccCCCCCccccEEEEEEeCCCceEEEEEE
Q 003882 381 GILEVGILSAQGLLPMKTR--------DGRGTTDAYCVAKYGLKW-VRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVF 451 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~--------~~~~~~dpyv~v~~~~~~-~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~ 451 (789)
|.|+|+|++|+||++++.. ...+.+||||+|+++++. .+|++++++.||.|||.|.|++.+ ...|+|+||
T Consensus 6 G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-~~~l~i~V~ 84 (136)
T d1gmia_ 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-GRKIELAVF 84 (136)
T ss_dssp EEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEEE
T ss_pred EEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-CCceEEEEE
Confidence 8999999999999986421 245679999999999876 689999999999999999999975 468999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccC--ceEeeeEeeeecCCCCCccceEEEEEEEEeecC
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEAD--RIYTHSYPLLVLNPSGVKKMGELQLAVRFTCLS 513 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~~~ 513 (789)
|++.++ +|++||++.|+|+++..+ .....|++|. +.|+|++++.|.+++
T Consensus 85 d~~~~~-----~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------p~G~v~l~v~~~~~~ 135 (136)
T d1gmia_ 85 HDAPIG-----YDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PEGKVYVIIDLSGSS 135 (136)
T ss_dssp ECCSSS-----SCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SSCEEEEEEEEEEEE
T ss_pred EecCCC-----CceeEEEEEEEHHHhhhcCCcceeEEEeCC--------CCcEEEEEEEEEeCC
Confidence 999876 889999999999998654 3567899995 359999999998864
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=2.8e-19 Score=161.65 Aligned_cols=124 Identities=19% Similarity=0.191 Sum_probs=100.0
Q ss_pred eEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCcee
Q 003882 54 FYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDYI 133 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~l 133 (789)
++|.|+|++|++++..+..+.+||||++.++++.++|+++++|.||.|||.|.|.+.. .+.|.|+|||++.+++|++|
T Consensus 6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~--~~~l~~~V~d~d~~~~d~~i 83 (133)
T d2nq3a1 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP--VSKLHFRVWSHQTLKSDVLL 83 (133)
T ss_dssp EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT--TCEEEEEEEECCSSSCCEEE
T ss_pred eEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe--cceeEEEEEEccCCCCCceE
Confidence 7899999999999998888899999999999999999999999999999999999865 46899999999999999999
Q ss_pred EEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 134 GKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 134 G~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
|++.++|.++.............|+.|....+.....|+|.+.+..
T Consensus 84 G~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~ 129 (133)
T d2nq3a1 84 GTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG 129 (133)
T ss_dssp EEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred EEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEee
Confidence 9999999998653221111111345555554444677999887753
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=2.9e-19 Score=161.93 Aligned_cols=114 Identities=29% Similarity=0.508 Sum_probs=96.9
Q ss_pred cccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC-----CeeeeeccccCCCCCeeccEEEEEccCC-C
Q 003882 40 SERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLG-----NYKGKTRHFEKKSNPEWKQVFAFSKEKI-Q 113 (789)
Q Consensus 40 ~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~-----~~~~~T~~~~~t~nP~wne~f~f~~~~~-~ 113 (789)
.+.+++.|+ + +.|.|+|++|+||+.++..|.+||||+|++. ..+++|+++++|.||+|||+|.|.+... .
T Consensus 5 ~i~l~~~~~--~--~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~ 80 (132)
T d1a25a_ 5 RIYIQAHID--R--EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDK 80 (132)
T ss_dssp EEEEEEEES--S--SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGG
T ss_pred EEEEEEEec--C--CEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEcccc
Confidence 345555553 4 7899999999999999999999999999993 3578999999999999999999998654 3
Q ss_pred CceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccC
Q 003882 114 SSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDR 163 (789)
Q Consensus 114 ~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~ 163 (789)
...|.|+|||++.+++|++||.+.|+|.++..+. .+ +||+|.+.
T Consensus 81 ~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~-~~-----~W~~L~~~ 124 (132)
T d1a25a_ 81 DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VD-----GWFKLLSQ 124 (132)
T ss_dssp GCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTCC-EE-----EEEECBCH
T ss_pred CCEEeEEEEecCCCCCCcEeEEEEEeHHHcCCCC-CC-----eEEECCCC
Confidence 4689999999999999999999999999987642 23 89999774
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.8e-19 Score=162.01 Aligned_cols=119 Identities=18% Similarity=0.251 Sum_probs=101.0
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC---EEEeeccccCCCCCccccEEEEEEeCC-CceEEEEEEeCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL---KWVRTRTLVDNFNPKWNEQYTWEVYDP-CTVITLGVFDNCHL 456 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~t~~P~wne~~~f~v~~~-~~~l~v~v~d~~~~ 456 (789)
+.|+|+|++|+||+.....|..|.+||||++.+++ ++.||++++++.||.|||.|.|.+.++ ...|.|+|||++..
T Consensus 3 ~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~~ 82 (126)
T d1rlwa_ 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV 82 (126)
T ss_dssp EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSS
T ss_pred cEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCCC
Confidence 58999999999999754334457899999999965 679999999999999999999999875 46899999999875
Q ss_pred CCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEEee
Q 003882 457 GGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRFTC 511 (789)
Q Consensus 457 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~~ 511 (789)
+|++||++.|+|+++..+.....||+|... ..|.|++++++.+
T Consensus 83 ------~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~------~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 83 ------MDETLGTATFTVSSMKVGEKKEVPFIFNQV------TEMVLEMSLEVAS 125 (126)
T ss_dssp ------CCEEEEEEEEEGGGSCTTCEEEEEEEETTT------EEEEEEEEEECCC
T ss_pred ------CCCeEEEEEEEHHHccCCCeEEEEEEccCC------CeEEEEEEEEEEe
Confidence 688999999999999999999999999521 3588888876543
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2.4e-19 Score=161.12 Aligned_cols=116 Identities=22% Similarity=0.397 Sum_probs=100.1
Q ss_pred eEEEEEEEEeeCCCCC---CCCCCCCcEEEEEECC---eeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCC
Q 003882 54 FYLYVRVEKARDLPTN---PVSGSCDPYVEVKLGN---YKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIV 127 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~---~~~g~~dpyv~v~~~~---~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~ 127 (789)
+.|+|+|++|+||+.. |..|.+||||++.+++ ++++|+++.++.||.|||+|.|.+.......|.|+|||++..
T Consensus 3 ~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~~ 82 (126)
T d1rlwa_ 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANYV 82 (126)
T ss_dssp EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCSS
T ss_pred cEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCCC
Confidence 7899999999999874 3457899999999986 578999999999999999999999887778999999999985
Q ss_pred CCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 128 GRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 128 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
+|++||++.|+|+++..+...+ .||+|.+. ..|+|.+++.+.
T Consensus 83 -~d~~lG~~~i~L~~l~~~~~~~-----~~~~L~~~-----~~g~i~~~l~~~ 124 (126)
T d1rlwa_ 83 -MDETLGTATFTVSSMKVGEKKE-----VPFIFNQV-----TEMVLEMSLEVA 124 (126)
T ss_dssp -CCEEEEEEEEEGGGSCTTCEEE-----EEEEETTT-----EEEEEEEEEECC
T ss_pred -CCCeEEEEEEEHHHccCCCeEE-----EEEEccCC-----CeEEEEEEEEEE
Confidence 6899999999999998776555 89999764 357888777653
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.5e-18 Score=158.19 Aligned_cols=117 Identities=17% Similarity=0.314 Sum_probs=102.3
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC----eeeeeccccCCCCCeeccEEEEEcc--C
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN----YKGKTRHFEKKSNPEWKQVFAFSKE--K 111 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~----~~~~T~~~~~t~nP~wne~f~f~~~--~ 111 (789)
.+..++++.|+... +.|.|+|++|+||.. .|.+||||++++.+ ..++|++++++.||+|||+|.|.+. +
T Consensus 12 ~~~l~~sl~y~~~~--~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~ 86 (138)
T d1wfma_ 12 APKLHYCLDYDCQK--AELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEE 86 (138)
T ss_dssp CCEEEEEEEEETTT--TEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTS
T ss_pred CCEEEEEEEECCCC--CEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehh
Confidence 56789999999987 999999999999964 56799999999964 3578999999999999999999984 3
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
+....|.|+|||++.++++++||++.|+|.++......+ .|++|++..
T Consensus 87 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~-----~W~~L~~~~ 134 (138)
T d1wfma_ 87 LPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA-----QWGELKTSG 134 (138)
T ss_dssp STTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCC-----EEEECCCCS
T ss_pred ccceEEEEEEeeecccccceeeeEEEEEhHHccCCCCce-----EeEeCCCCC
Confidence 457889999999999999999999999999998765555 999998864
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.77 E-value=2.1e-18 Score=155.70 Aligned_cols=119 Identities=20% Similarity=0.334 Sum_probs=97.6
Q ss_pred eEEEEEEEEeeCCCCC--CCCCCCCcEEEEEEC-----CeeeeeccccCC-CCCeeccEEEEEccCCCCceEEEEEEeCC
Q 003882 54 FYLYVRVEKARDLPTN--PVSGSCDPYVEVKLG-----NYKGKTRHFEKK-SNPEWKQVFAFSKEKIQSSVLEVFVRDRE 125 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~--~~~g~~dpyv~v~~~-----~~~~~T~~~~~t-~nP~wne~f~f~~~~~~~~~l~v~V~d~~ 125 (789)
..|.|+|++|++|+.. +.++.+||||+|++. .++++|++++++ .||.|||+|.|.+.......|.|+|||+|
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d 83 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD 83 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence 5799999999999754 457789999999994 367899987665 69999999999987766788999999999
Q ss_pred CCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 126 IVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 126 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
.+++|++||++.|+|..+..+. .|++|.+..|..-..+.|.+.+.+.
T Consensus 84 ~~~~d~~iG~~~i~l~~l~~g~--------~~~~L~~~~g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 84 SSSKNDFIGQSTIPWNSLKQGY--------RHVHLLSKNGDQHPSATLFVKISIQ 130 (131)
T ss_dssp TTTCCEEEEEEEEEGGGBCCEE--------EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred CCCCCcEEEEEEEEEeccCCCC--------EEEECCCCCcCCCCCCEEEEEEEEE
Confidence 9999999999999999997642 7999998887644567788777653
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=8.5e-19 Score=157.13 Aligned_cols=115 Identities=23% Similarity=0.490 Sum_probs=94.8
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEE-cc--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFS-KE-- 110 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~-~~-- 110 (789)
|...+++.|+... +.|.|+|++|+||+..+..+.+||||+|.+.+ .+++|+++++|.||+|||+|.|. +.
T Consensus 1 G~l~l~l~y~~~~--~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~ 78 (125)
T d2bwqa1 1 GQLSIKLWFDKVG--HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRR 78 (125)
T ss_dssp CEEEEEEEEETTT--TEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGG
T ss_pred CEEEEEEEEECCC--CEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChh
Confidence 3578899999988 99999999999999998899999999999942 46799999999999999999997 32
Q ss_pred CCCCceEEEEEEeCCCCC--CCceeEEEEEEccccCCCCCCCCCCCCeeEEcc
Q 003882 111 KIQSSVLEVFVRDREIVG--RDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLE 161 (789)
Q Consensus 111 ~~~~~~l~v~V~d~~~~~--~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~ 161 (789)
+.....|.|+|||++.++ ++++||++.|+|+++..+.. . +||+|+
T Consensus 79 ~l~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~-~-----~Wy~L~ 125 (125)
T d2bwqa1 79 EFRERMLEITLWDQARVREEESEFLGEILIELETALLDDE-P-----HWYKLQ 125 (125)
T ss_dssp GGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSSC-E-----EEEECC
T ss_pred hcCCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCCC-C-----EEEeCc
Confidence 334678999999999753 45699999999999986642 2 899985
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.76 E-value=1.6e-18 Score=156.99 Aligned_cols=103 Identities=22% Similarity=0.383 Sum_probs=90.1
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE-----CCEEEeeccccCCCCCccccEEEEEEeCC--CceEEEEEEeC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-----GLKWVRTRTLVDNFNPKWNEQYTWEVYDP--CTVITLGVFDN 453 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~f~v~~~--~~~l~v~v~d~ 453 (789)
+.|.|+|++|+||++++ ..|.+||||++.+ +..+++|+++++|.||.|||.|.|.+..+ ...|.|+|||+
T Consensus 15 ~~L~V~V~~a~~L~~~d---~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~ 91 (132)
T d1a25a_ 15 EVLIVVVRDAKNLVPMD---PNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDW 91 (132)
T ss_dssp SEEEEEEEEEESCCCCS---TTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred CEEEEEEEeeeCCCCCC---CCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEec
Confidence 59999999999999874 4578999999998 45679999999999999999999999764 45899999999
Q ss_pred CCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeec
Q 003882 454 CHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVL 492 (789)
Q Consensus 454 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 492 (789)
|.++ +|++||.+.|+|+++..+ ..+.||+|.+.
T Consensus 92 d~~~-----~d~~iG~~~i~l~~l~~~-~~~~W~~L~~~ 124 (132)
T d1a25a_ 92 DLTS-----RNDFMGSLSFGISELQKA-GVDGWFKLLSQ 124 (132)
T ss_dssp CSSS-----CCEEEEEEEEEHHHHTTC-CEEEEEECBCH
T ss_pred CCCC-----CCcEeEEEEEeHHHcCCC-CCCeEEECCCC
Confidence 9986 789999999999999765 46899999643
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.76 E-value=3e-18 Score=155.55 Aligned_cols=116 Identities=20% Similarity=0.373 Sum_probs=99.4
Q ss_pred eEEEEEEEEeeCCCCCC-----------CCCCCCcEEEEEECCee-eeeccccCCCCCeeccEEEEEccCCCCceEEEEE
Q 003882 54 FYLYVRVEKARDLPTNP-----------VSGSCDPYVEVKLGNYK-GKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFV 121 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~~~-----------~~g~~dpyv~v~~~~~~-~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V 121 (789)
|.|.|+|++|++|++.+ ..+.+||||+|+++++. .+|+++.++.||.|||+|.|.+.+ ...|.|+|
T Consensus 6 G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~--~~~l~i~V 83 (136)
T d1gmia_ 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN--GRKIELAV 83 (136)
T ss_dssp EEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE--ECEEEEEE
T ss_pred EEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec--CCceEEEE
Confidence 89999999999998743 35678999999999865 589999999999999999999965 47899999
Q ss_pred EeCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEee
Q 003882 122 RDREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIGT 181 (789)
Q Consensus 122 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~~ 181 (789)
||++.+++|++||.+.|+|+++..+... ....|++|++ .|+|++.+.+..
T Consensus 84 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~---~~~~w~~L~p-------~G~v~l~v~~~~ 133 (136)
T d1gmia_ 84 FHDAPIGYDDFVANCTIQFEELLQNGSR---HFEDWIDLEP-------EGKVYVIIDLSG 133 (136)
T ss_dssp EECCSSSSCEEEEEEEEEHHHHTSTTCS---EEEEEEECBS-------SCEEEEEEEEEE
T ss_pred EEecCCCCceeEEEEEEEHHHhhhcCCc---ceeEEEeCCC-------CcEEEEEEEEEe
Confidence 9999999999999999999999876432 1338999974 488888888764
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=6.2e-18 Score=154.04 Aligned_cols=108 Identities=24% Similarity=0.402 Sum_probs=94.4
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCCCC-CCCcEEEEEEC---CeeeeeccccCCCCCeeccEEEEEc-c--
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSG-SCDPYVEVKLG---NYKGKTRHFEKKSNPEWKQVFAFSK-E-- 110 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g-~~dpyv~v~~~---~~~~~T~~~~~t~nP~wne~f~f~~-~-- 110 (789)
.|..++++.|+... +.|.|+|++|+||+.++..+ .+||||++.+. .++++|++++++.||.|||+|.|.. .
T Consensus 8 ~G~l~~sl~Y~~~~--~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 85 (138)
T d1ugka_ 8 LGTLFFSLEYNFER--KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYT 85 (138)
T ss_dssp CCEEEEEEEEEGGG--TEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCST
T ss_pred CEEEEEEEEEeCCC--CEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHH
Confidence 57899999999987 89999999999999887655 47999999994 3578999999999999999999973 2
Q ss_pred CCCCceEEEEEEeCCCCCCCceeEEEEEEccccCCCC
Q 003882 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTRV 147 (789)
Q Consensus 111 ~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~~ 147 (789)
+.....|+|+|||++.++++++||++.|+|.++...+
T Consensus 86 ~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~ 122 (138)
T d1ugka_ 86 QIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE 122 (138)
T ss_dssp TGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTT
T ss_pred HcccceEEEEEEECCCCCCCcEEEEEEEEcccccCCC
Confidence 2345789999999999999999999999999987553
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=4.9e-18 Score=158.39 Aligned_cols=123 Identities=28% Similarity=0.348 Sum_probs=101.4
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccCC
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEKI 112 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~~ 112 (789)
.|..++++.|+... +.|.|+|++|+||+..+..+.+||||++++.+ ..++|++++++.||+|||+|.|.+...
T Consensus 11 ~G~l~~sl~Y~~~~--~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~ 88 (157)
T d1uowa_ 11 LGDICFSLRYVPTA--GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE 88 (157)
T ss_dssp CCEEEEEEEEETTT--TEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred eeEEEEEEEEcCCC--CEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHH
Confidence 77889999999988 89999999999999998889999999999854 246899999999999999999998543
Q ss_pred --CCceEEEEEEeCCCCCCCceeEEEEEEccccCCC--------CCCCCCCCCeeEEcccC
Q 003882 113 --QSSVLEVFVRDREIVGRDDYIGKVVFDMNEVPTR--------VPPDSPLAPQWYRLEDR 163 (789)
Q Consensus 113 --~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~~~--------~~~~~~~~~~w~~L~~~ 163 (789)
....|.|+|||++.++++++||++.|++...... ..+ .....+||+|+.+
T Consensus 89 ~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~-~~~v~~Wh~L~~~ 148 (157)
T d1uowa_ 89 QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANP-RRPIAQWHTLQVE 148 (157)
T ss_dssp GGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHST-TCCEEEEEECBCH
T ss_pred HcCccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCC-CCceeEeEeCCCC
Confidence 4568999999999999999999999999653211 000 1122389999864
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=5.3e-18 Score=155.65 Aligned_cols=119 Identities=21% Similarity=0.285 Sum_probs=101.7
Q ss_pred cccceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE---CCE
Q 003882 340 KFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY---GLK 416 (789)
Q Consensus 340 ~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---~~~ 416 (789)
...|+|++++.+.. ..+.|.|+|++|+||+.++ ..|.+||||+|.+ +.+
T Consensus 18 ~~~G~l~~sl~y~~-------------------------~~~~L~V~V~~a~~L~~~~---~~g~~dpyV~v~l~~~~~~ 69 (143)
T d1rsya_ 18 EKLGKLQYSLDYDF-------------------------QNNQLLVGIIQAAELPALD---MGGTSDPYVKVFLLPDKKK 69 (143)
T ss_dssp CCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCS---TTSCCCEEEEEEEETTCCS
T ss_pred hcceEEEEEEEEeC-------------------------CCCEEEEEEEEccCCCCCC---CCCCCCeEEEEEEcCCCCe
Confidence 45799998887532 2259999999999999874 4578999999998 556
Q ss_pred EEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeee
Q 003882 417 WVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLV 491 (789)
Q Consensus 417 ~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 491 (789)
..+|++++++.||.|||.|.|.+.. ....|.|+|||++.++ ++++||.+.|+|+++..++...+||+|.+
T Consensus 70 ~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~~-----~~~~iG~~~i~L~~~~~~~~~~~W~~L~s 142 (143)
T d1rsya_ 70 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS-----KHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp CEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS-----CCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred eEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCCCC-----CCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence 7999999999999999999998864 3568999999999875 78899999999999998888899999963
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.4e-17 Score=150.28 Aligned_cols=118 Identities=15% Similarity=0.181 Sum_probs=95.4
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSG 460 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 460 (789)
+.|.|+|++|++|+..+. .+.+||||++.+|++.++|++++++.||.|||.|.|++.+ .+.|+|+|||++.++
T Consensus 6 ~~L~v~v~~A~~~~~~~~---~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~--- 78 (133)
T d2nq3a1 6 SQLQITVISAKLKENKKN---WFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLK--- 78 (133)
T ss_dssp EEEEEEEEEEEECCCC-----CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSS---
T ss_pred eEEEEEEEEeECCCcCCC---CCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCC---
Confidence 689999999999987643 4689999999999999999999999999999999999874 778999999999986
Q ss_pred CCCCCccEEEEEECccccc---Cce--EeeeEeeeecCCCCCccceEEEEEEE
Q 003882 461 TKPDSRIGKVRIRLSTLEA---DRI--YTHSYPLLVLNPSGVKKMGELQLAVR 508 (789)
Q Consensus 461 ~~~d~~lG~~~i~l~~l~~---~~~--~~~~~~L~~~~~~g~~~~G~i~l~~~ 508 (789)
+|++||++.|+|+++.. +.. ...|+.|... ..+....|+|.+.+.
T Consensus 79 --~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~-~~~~~~~G~L~v~l~ 128 (133)
T d2nq3a1 79 --SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-KEPTETIGDLSICLD 128 (133)
T ss_dssp --CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEES-SCTTSEEEEEEEEEE
T ss_pred --CCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCC-CCCceEEEEEEEEEe
Confidence 88999999999999743 222 2334444432 244556799887764
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=1.1e-17 Score=148.92 Aligned_cols=117 Identities=18% Similarity=0.194 Sum_probs=93.8
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCEEEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCCCCCC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLKWVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHLGGSG 460 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~~~~~ 460 (789)
+.|.|+|.+|++|.++ +.+||||++++++++.+|.+++ +.||.|||.|.|.+.++...|.|+|||++..
T Consensus 2 ~~L~V~v~~a~~l~~~------~~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~---- 70 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQ------EKFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLDLGLTVEVWNKGLI---- 70 (128)
T ss_dssp EEEEEEEEEEECSSCG------GGCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCCSSEEEEEEEECCSS----
T ss_pred eEEEEEEEEEECCCCC------CCcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccccceEEEEEEeCCCc----
Confidence 5899999999999875 3679999999999999999886 5599999999999999989999999999875
Q ss_pred CCCCCccEEEEEECcccccC--ceEeeeEeeeecC--CCCC------ccceEEEEEEEEe
Q 003882 461 TKPDSRIGKVRIRLSTLEAD--RIYTHSYPLLVLN--PSGV------KKMGELQLAVRFT 510 (789)
Q Consensus 461 ~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~--~~g~------~~~G~i~l~~~f~ 510 (789)
+|++||++.|+|+++..+ .....||+|.... ..|. ...++|.++++|+
T Consensus 71 --~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~~ 128 (128)
T d2cjta1 71 --WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE 128 (128)
T ss_dssp --CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEEC
T ss_pred --CCcceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEcC
Confidence 688999999999998643 3457899995432 1111 1246677777663
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=2e-17 Score=149.20 Aligned_cols=119 Identities=21% Similarity=0.306 Sum_probs=92.5
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE-----CCEEEeeccccC-CCCCccccEEEEEEeCC-CceEEEEEEeC
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-----GLKWVRTRTLVD-NFNPKWNEQYTWEVYDP-CTVITLGVFDN 453 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~-t~~P~wne~~~f~v~~~-~~~l~v~v~d~ 453 (789)
..|+|+|++|++|+..+. +..+.+||||+|++ +.+..||+++++ ++||.|||.|.|.+..+ ...|.|+|||+
T Consensus 4 ~~l~V~Vi~a~~L~~~~~-~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~ 82 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNK-NKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDY 82 (131)
T ss_dssp EEEEEEEEEEESCCCCC------CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEEC
T ss_pred EEEEEEEEEeeCCCCCCC-CCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEe
Confidence 389999999999986543 45678999999998 357899999876 47999999999998764 56899999999
Q ss_pred CCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEEE
Q 003882 454 CHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVRF 509 (789)
Q Consensus 454 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f 509 (789)
|..+ .|++||++.|+|+++..| .+|++|.+..+... ..++|.+.+.+
T Consensus 83 d~~~-----~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~-~~~~L~v~i~~ 129 (131)
T d1qasa2 83 DSSS-----KNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQH-PSATLFVKISI 129 (131)
T ss_dssp CTTT-----CCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEE-EEEEEEEEEEE
T ss_pred cCCC-----CCcEEEEEEEEEeccCCC---CEEEECCCCCcCCC-CCCEEEEEEEE
Confidence 9876 789999999999999765 46899976533211 34677776654
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=3.6e-17 Score=145.51 Aligned_cols=103 Identities=25% Similarity=0.397 Sum_probs=87.4
Q ss_pred eeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCCce
Q 003882 53 MFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRDDY 132 (789)
Q Consensus 53 ~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d~~ 132 (789)
|+.|.|+|++|++|.+++ ..||||++.+++++.+|++++ +.||+|||+|.|.+.++ ...|.|+|||++.. +|++
T Consensus 1 ~~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~-~~~L~v~V~d~~~~-~d~~ 74 (128)
T d2cjta1 1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRL-DLGLTVEVWNKGLI-WDTM 74 (128)
T ss_dssp CEEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCC-SSEEEEEEEECCSS-CEEE
T ss_pred CeEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccc-cceEEEEEEeCCCc-CCcc
Confidence 578999999999999866 679999999999999999886 55999999999999887 47899999999986 6999
Q ss_pred eEEEEEEccccCCCCCCCCCCCCeeEEcccCC
Q 003882 133 IGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRR 164 (789)
Q Consensus 133 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 164 (789)
||++.|+|+++..+... ....||+|..+.
T Consensus 75 lG~~~I~L~~l~~~~~~---~~~~W~~L~~~~ 103 (128)
T d2cjta1 75 VGTVWIPLRTIRQSNEE---GPGEWLTLDSQA 103 (128)
T ss_dssp EEEEEEEGGGSCBCSSC---CCCEEEECBC--
T ss_pred eEEEEEEehhhccCCCC---CCCeeEECCccc
Confidence 99999999999754321 123899997643
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=1.3e-17 Score=152.06 Aligned_cols=103 Identities=31% Similarity=0.407 Sum_probs=85.4
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEEC--C---eeeeeccccCCCCCeeccEEEEEcc--C
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLG--N---YKGKTRHFEKKSNPEWKQVFAFSKE--K 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~--~---~~~~T~~~~~t~nP~wne~f~f~~~--~ 111 (789)
|...+++.|+... +.|.|+|++|+||+.++..+.+||||++++. + .+++|++++++.||.|||+|.|.+. +
T Consensus 2 G~l~~sl~Y~~~~--~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~ 79 (138)
T d1w15a_ 2 GELLVSLCYQSTT--NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCES 79 (138)
T ss_dssp CEEEEEEEEETTT--TEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSS
T ss_pred cEEEEEEEEcCCC--CEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHH
Confidence 4678999999987 8999999999999999988999999999983 2 3568999999999999999999974 3
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEcccc
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEV 143 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l 143 (789)
.....|.|.|||++.++++++||++.|++...
T Consensus 80 ~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 80 LEEISVEFLVLDSERGSRNEVIGRLVLGATAE 111 (138)
T ss_dssp STTEEEEEEEEECCTTSCCEEEEEEEESTTCC
T ss_pred hCccEEEEEEEeCCCCCCCCEEEEEEEcchhC
Confidence 34567999999999999999999999998754
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=2.5e-17 Score=150.18 Aligned_cols=104 Identities=24% Similarity=0.334 Sum_probs=92.5
Q ss_pred ccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECC-----eeeeeccccCCCCCeeccEEEEEccC--
Q 003882 39 SSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGN-----YKGKTRHFEKKSNPEWKQVFAFSKEK-- 111 (789)
Q Consensus 39 ~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~~~~-- 111 (789)
|...+++.|+... +.|.|+|++|+||+..+..+.+||||+|++.+ .+++|+++++|.||+|||+|.|.+..
T Consensus 2 G~l~l~l~Y~~~~--~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~ 79 (137)
T d2cm5a1 2 GKILVSLMYSTQQ--GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSD 79 (137)
T ss_dssp CEEEEEEEEETTT--TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGG
T ss_pred cEEEEEEEEECCC--CEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHH
Confidence 4678999999887 99999999999999988889999999999843 46799999999999999999999853
Q ss_pred CCCceEEEEEEeCCCCCCCceeEEEEEEccccC
Q 003882 112 IQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVP 144 (789)
Q Consensus 112 ~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~ 144 (789)
.....|.|.|||++.++++++||++.+++..+.
T Consensus 80 l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~ 112 (137)
T d2cm5a1 80 LAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG 112 (137)
T ss_dssp GGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH
T ss_pred ccccEEEEEeeeCCCCCCCCEEEEEEeCccccC
Confidence 346789999999999999999999999997643
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=4.2e-17 Score=146.83 Aligned_cols=109 Identities=18% Similarity=0.257 Sum_probs=89.8
Q ss_pred ccEEEEEEEEEeecCCCCCCCCCCCeEEEEEEC---CeEEeeecccCCCCCCccCceeEEEeeCC--CCCeEEEEEEEcc
Q 003882 215 KLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVG---NQVLKTKLCPTRTTNPLWNEDLIFVAAEP--FEEQLVLTVENKV 289 (789)
Q Consensus 215 ~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~---~~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~l~i~V~d~d 289 (789)
..+.|.|+|++|++|+..+..+.+||||++++. .+.++|+++++ +.||.|||.|.|.+... ....|.|+|||++
T Consensus 16 ~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~ 94 (130)
T d1dqva1 16 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAELAQRKLHFSVYDFD 94 (130)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcC-CCCeeeeeEEEEEEchHHcCCCeEEEEEEEcC
Confidence 345799999999999999999999999999994 46789999987 99999999999998543 4567999999999
Q ss_pred CCCCCCceEEEEEeccccccccCCCCCcceeEEcccc
Q 003882 290 TPAKDEPLGRLRLSLNVIERRLDHRPVHSKWFNLEKF 326 (789)
Q Consensus 290 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~w~~L~~~ 326 (789)
.++++++||++.|++...... .......|++|.+.
T Consensus 95 ~~~~d~~iG~~~i~~~~~l~~--~~~~~~~W~~L~~~ 129 (130)
T d1dqva1 95 RFSRHDLIGQVVLDNLLELAE--QPPDRPLWRDILEG 129 (130)
T ss_dssp SSSCCCEEEEEECCCTTGGGS--SCSSCCCCEECBCC
T ss_pred CCCCCceEEEEEECchhhhhc--CCCCCcEEEecccC
Confidence 999999999999986543322 22235579999875
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.69 E-value=5.6e-18 Score=155.57 Aligned_cols=104 Identities=24% Similarity=0.350 Sum_probs=89.3
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEECC--------------EEEeeccccCCCCCccccEEEEEEeC----C
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGL--------------KWVRTRTLVDNFNPKWNEQYTWEVYD----P 442 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~--------------~~~~T~~~~~t~~P~wne~~~f~v~~----~ 442 (789)
|.|.|+|++|+||++++ ..|.+||||+|++.+ ++.||++++++.||.|||.|.|.+.. .
T Consensus 18 ~~L~V~V~~A~~L~~~d---~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~ 94 (142)
T d1rh8a_ 18 GNLIIHILQARNLVPRD---NNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLM 94 (142)
T ss_dssp TEEEEEEEEEESCCCCS---SSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHT
T ss_pred CEEEEEEEEeECCCCcC---CCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccC
Confidence 69999999999999874 458899999999821 23689999999999999999997543 3
Q ss_pred CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeec
Q 003882 443 CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVL 492 (789)
Q Consensus 443 ~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 492 (789)
...|.|+|||++.++ +|++||.+.|+|+++..+.....||+|...
T Consensus 95 ~~~L~i~V~d~d~~~-----~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~ 139 (142)
T d1rh8a_ 95 KKTLEVTVWDYDRFS-----SNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp TCEEEEEEEEECSSS-----CEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred CCEEEEEEEEecCCC-----CCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence 568999999999876 789999999999999888888999999754
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=1.1e-17 Score=153.86 Aligned_cols=105 Identities=23% Similarity=0.311 Sum_probs=93.3
Q ss_pred cccccceeeecccCceeEEEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-----eeeeccccCCCCCeeccEEEEEcc--
Q 003882 38 ISSERATSTYDLVEQMFYLYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-----KGKTRHFEKKSNPEWKQVFAFSKE-- 110 (789)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-----~~~T~~~~~t~nP~wne~f~f~~~-- 110 (789)
.|...+++.|+... +.|.|+|++|+||+..+..+.+||||+|++.+. +++|+++++|.||+|||+|.|.+.
T Consensus 6 ~G~l~~sl~Y~~~~--~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~ 83 (145)
T d1dqva2 6 LGELNFSLCYLPTA--GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPE 83 (145)
T ss_dssp CCEEEEEEEEETTT--TEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSG
T ss_pred ceEEEEEEEEcCCC--CEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehh
Confidence 45789999999877 999999999999999888899999999999752 568999999999999999999874
Q ss_pred CCCCceEEEEEEeCCCCCCCceeEEEEEEccccC
Q 003882 111 KIQSSVLEVFVRDREIVGRDDYIGKVVFDMNEVP 144 (789)
Q Consensus 111 ~~~~~~l~v~V~d~~~~~~d~~lG~~~i~l~~l~ 144 (789)
+.....|.|.|||++.++++++||++.|++..+.
T Consensus 84 ~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~ 117 (145)
T d1dqva2 84 SVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD 117 (145)
T ss_dssp GGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTC
T ss_pred hcCCCEEEEEEEecCCCCCCcEEEEEEECchHcC
Confidence 3346789999999999999999999999997763
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.4e-16 Score=142.41 Aligned_cols=103 Identities=22% Similarity=0.364 Sum_probs=81.4
Q ss_pred cEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE-----CCEEEeeccccCCCCCccccEEEEEE-eC---CCceEEEEEE
Q 003882 381 GILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-----GLKWVRTRTLVDNFNPKWNEQYTWEV-YD---PCTVITLGVF 451 (789)
Q Consensus 381 g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~f~v-~~---~~~~l~v~v~ 451 (789)
+.|.|+|++|+||++.+ ..+.+||||+|.+ +....||++++++.||.|||.|.|.. .. ....|.|+||
T Consensus 14 ~~L~V~V~~a~~L~~~~---~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~ 90 (125)
T d2bwqa1 14 HQLIVTILGAKDLPSRE---DGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW 90 (125)
T ss_dssp TEEEEEEEEEESCCCCT---TSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred CEEEEEEEEeECCCCcC---CCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEE
Confidence 69999999999999874 4578999999998 34568999999999999999999974 32 2458999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
|.+.++ ...+++||++.|+|+++..... .+||+|.
T Consensus 91 d~~~~~---~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~ 125 (125)
T d2bwqa1 91 DQARVR---EEESEFLGEILIELETALLDDE-PHWYKLQ 125 (125)
T ss_dssp EC----------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred ECCCCC---CCCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence 998753 2246699999999999886554 6899983
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3e-16 Score=142.65 Aligned_cols=119 Identities=16% Similarity=0.127 Sum_probs=99.2
Q ss_pred ccccceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEEC----
Q 003882 339 LKFSSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYG---- 414 (789)
Q Consensus 339 ~~~~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~---- 414 (789)
.+..++|++.+.++. ..+.|.|+|++|++|+. .+.+||||++.+.
T Consensus 9 ~~~~~~l~~sl~y~~-------------------------~~~~L~V~v~~a~~L~~------~g~~dpyVkv~l~~~~~ 57 (138)
T d1wfma_ 9 WNQAPKLHYCLDYDC-------------------------QKAELFVTRLEAVTSNH------DGGCDCYVQGSVANRTG 57 (138)
T ss_dssp CSSCCEEEEEEEEET-------------------------TTTEEEEEEEEEECCCC------SSCCCEEEEEEEEETTE
T ss_pred CCcCCEEEEEEEECC-------------------------CCCEEEEEEEEcCCCCC------CCCcCcEEEEEECCCCC
Confidence 445788988887532 23699999999999953 3678999999993
Q ss_pred CEEEeeccccCCCCCccccEEEEEEeC---CCceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeee
Q 003882 415 LKWVRTRTLVDNFNPKWNEQYTWEVYD---PCTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLV 491 (789)
Q Consensus 415 ~~~~~T~~~~~t~~P~wne~~~f~v~~---~~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 491 (789)
....+|++++++.||.|||.|.|.+.. ....|.|+|||++.++ ++++||++.|+|.++..+...+.|++|..
T Consensus 58 ~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~~~-----~~~~iG~~~i~L~~l~~~~~~~~W~~L~~ 132 (138)
T d1wfma_ 58 SVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFS-----RHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp EEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSC-----TTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred ccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecccc-----cceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence 235899999999999999999999874 2568999999999876 78999999999999987777899999975
Q ss_pred cC
Q 003882 492 LN 493 (789)
Q Consensus 492 ~~ 493 (789)
..
T Consensus 133 ~~ 134 (138)
T d1wfma_ 133 SG 134 (138)
T ss_dssp CS
T ss_pred CC
Confidence 43
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1e-15 Score=139.12 Aligned_cols=117 Identities=21% Similarity=0.249 Sum_probs=93.8
Q ss_pred cceEEEEEEEcCcccccCCcccccCCCCcccccccCCCccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE---CCEEE
Q 003882 342 SSRIHLRVCLEGAYHVMDESTMYISDQRPTARQLWKQPIGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY---GLKWV 418 (789)
Q Consensus 342 ~G~i~l~i~~~~~~~~~d~~~~~~~d~~~~~~~~~~~~~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~---~~~~~ 418 (789)
.|+|.+++++... .+.|.|+|++|+||+.++.. .+.+||||++.+ +.+.+
T Consensus 8 ~G~l~~sl~Y~~~-------------------------~~~L~V~V~~a~~L~~~d~~--~~~~dpyV~v~l~~~~~~~~ 60 (138)
T d1ugka_ 8 LGTLFFSLEYNFE-------------------------RKAFVVNIKEARGLPAMDEQ--SMTSDPYIKMTILPEKKHKV 60 (138)
T ss_dssp CCEEEEEEEEEGG-------------------------GTEEEEEEEEEESCCCCBTT--TTBCEEEEEEEEETTTCSEE
T ss_pred CEEEEEEEEEeCC-------------------------CCEEEEEEEEecCCCCCCCC--CCccceEEEEEEcCCCCEeE
Confidence 7999999986432 25999999999999987532 345899999999 55679
Q ss_pred eeccccCCCCCccccEEEEEEeCC----CceEEEEEEeCCCCCCCCCCCCCccEEEEEECcccccC-ceEeeeEeee
Q 003882 419 RTRTLVDNFNPKWNEQYTWEVYDP----CTVITLGVFDNCHLGGSGTKPDSRIGKVRIRLSTLEAD-RIYTHSYPLL 490 (789)
Q Consensus 419 ~T~~~~~t~~P~wne~~~f~v~~~----~~~l~v~v~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~ 490 (789)
+|++++++.||.|||.|.|..... ...|+|+|||++.++ +|++||.+.|+|+++... .....|..+.
T Consensus 61 kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~~~-----~~~~iG~~~i~L~~~~~~~~~~~~~~~~~ 132 (138)
T d1ugka_ 61 KTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFS-----RDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp ECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSC-----CCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred eCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCCCC-----CCcEEEEEEEEcccccCCCCeEEEEeecc
Confidence 999999999999999999974332 458999999999876 789999999999998643 3445555553
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=6.5e-16 Score=140.55 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=79.8
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE--CC---EEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEE
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY--GL---KWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVF 451 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~--~~---~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~ 451 (789)
.+.|.|.|++|+||+.++ ..+.+||||++.+ ++ ...||++++++.||.|||.|.|.+... ...|.|.||
T Consensus 14 ~~~L~V~v~~a~~L~~~~---~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~ 90 (138)
T d1w15a_ 14 TNTLTVVVLKARHLPKSD---VSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVL 90 (138)
T ss_dssp TTEEEEEEEEEESCC---------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEE
T ss_pred CCEEEEEEEEeECCCCCC---CCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEE
Confidence 469999999999999874 4578999999998 33 346899999999999999999998642 347999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccc------------cCceEeeeEeee
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLE------------ADRIYTHSYPLL 490 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~------------~~~~~~~~~~L~ 490 (789)
|++.++ ++++||++.|++.... +++....||+|.
T Consensus 91 d~~~~~-----~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~Wh~L~ 136 (138)
T d1w15a_ 91 DSERGS-----RNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLC 136 (138)
T ss_dssp ECCTTS-----CCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred eCCCCC-----CCCEEEEEEEcchhCCchHHHHHHHHhCCCCeeeECeEcc
Confidence 999875 7899999999998642 234456666664
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=1.1e-15 Score=139.14 Aligned_cols=101 Identities=22% Similarity=0.325 Sum_probs=83.6
Q ss_pred ccEEEEEEEEccCCCCCccCCCCCCcCcEEEEEE-----CCEEEeeccccCCCCCccccEEEEEEeCC---CceEEEEEE
Q 003882 380 IGILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-----GLKWVRTRTLVDNFNPKWNEQYTWEVYDP---CTVITLGVF 451 (789)
Q Consensus 380 ~g~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-----~~~~~~T~~~~~t~~P~wne~~~f~v~~~---~~~l~v~v~ 451 (789)
.|.|.|.|++|+||+.++ ..+.+||||+|++ ...+.||++++++.||.|||.|.|++... ...|.|.||
T Consensus 14 ~~~L~V~v~~a~nL~~~~---~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~ 90 (137)
T d2cm5a1 14 QGGLIVGIIRCVHLAAMD---ANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVW 90 (137)
T ss_dssp TTEEEEEEEEEESCCCCS---TTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEE
T ss_pred CCEEEEEEEEEECCCCCC---CCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEee
Confidence 479999999999999774 3578999999998 23558999999999999999999998743 468999999
Q ss_pred eCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeee
Q 003882 452 DNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLL 490 (789)
Q Consensus 452 d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 490 (789)
|++.++ ++++||++.|++..+..+ ..+|++|.
T Consensus 91 ~~~~~~-----~~~~iG~~~i~l~~~~~~--~~~W~~l~ 122 (137)
T d2cm5a1 91 DYDIGK-----SNDYIGGCQLGISAKGER--LKHWYECL 122 (137)
T ss_dssp ECCSSS-----CCEEEEEEEEETTCCHHH--HHHHHHHH
T ss_pred eCCCCC-----CCCEEEEEEeCccccCcc--hhhhhhHh
Confidence 999875 889999999999875432 35677664
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=3.9e-15 Score=138.43 Aligned_cols=125 Identities=21% Similarity=0.315 Sum_probs=101.0
Q ss_pred ccceEEEEEEEEeecCCCcCCccCCCCCcccCCCccccccccccccCccEEEEEEEEEeecCCCCCCCCCCCeEEEEEEC
Q 003882 168 KVKGEVMLAVWIGTQADEAFPEAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVG 247 (789)
Q Consensus 168 ~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~ 247 (789)
+..|+|.+++.|.+ ..+.|.|+|++|++|+..+..+.+||||++++.
T Consensus 9 ~~~G~l~~sl~Y~~---------------------------------~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~ 55 (157)
T d1uowa_ 9 EKLGDICFSLRYVP---------------------------------TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLM 55 (157)
T ss_dssp GCCCEEEEEEEEET---------------------------------TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEE
T ss_pred eeeeEEEEEEEEcC---------------------------------CCCEEEEEEEEEEEcccccCCCCCCeeEEEEEe
Confidence 56899999999863 334699999999999999888999999999985
Q ss_pred C-----eEEeeecccCCCCCCccCceeEEEeeCC--CCCeEEEEEEEccCCCCCCceEEEEEeccccccc--------cC
Q 003882 248 N-----QVLKTKLCPTRTTNPLWNEDLIFVAAEP--FEEQLVLTVENKVTPAKDEPLGRLRLSLNVIERR--------LD 312 (789)
Q Consensus 248 ~-----~~~kT~~~~~~t~nP~wne~f~f~~~~~--~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~--------~~ 312 (789)
. ..++|++.++ +.||.|||+|.|.+... ....|.|+|||++.++++++||++.|++...... ..
T Consensus 56 ~~~~~~~~~kT~v~~~-t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~ 134 (157)
T d1uowa_ 56 QNGKRLKKKKTTIKKN-TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLAN 134 (157)
T ss_dssp ETTEEEEEEECCCCCS-CSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHS
T ss_pred cCCccccceecccccC-CCCcccCCeEEEEecHHHcCccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhC
Confidence 2 3467888876 99999999999998654 3558999999999999999999999999753211 01
Q ss_pred CCCCcceeEEcccc
Q 003882 313 HRPVHSKWFNLEKF 326 (789)
Q Consensus 313 ~~~~~~~w~~L~~~ 326 (789)
......+|+.|+.+
T Consensus 135 ~~~~v~~Wh~L~~~ 148 (157)
T d1uowa_ 135 PRRPIAQWHTLQVE 148 (157)
T ss_dssp TTCCEEEEEECBCH
T ss_pred CCCceeEeEeCCCC
Confidence 23345689999875
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=4.1e-15 Score=131.45 Aligned_cols=110 Identities=16% Similarity=0.275 Sum_probs=84.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEECCe-----eeeeccccCCCCCeeccEEEEEccCCCCceEEEEEEeCCCCCCC
Q 003882 56 LYVRVEKARDLPTNPVSGSCDPYVEVKLGNY-----KGKTRHFEKKSNPEWKQVFAFSKEKIQSSVLEVFVRDREIVGRD 130 (789)
Q Consensus 56 L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~~-----~~~T~~~~~t~nP~wne~f~f~~~~~~~~~l~v~V~d~~~~~~d 130 (789)
+.|.+.++..++ ..++.+||||+|++.+. .++|+++++|+||+|||+|.|.+.+. ..|.|.|||+| +
T Consensus 7 ~~~~~~~~~~~~--~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~~--~~l~i~V~d~d----d 78 (123)
T d1bdya_ 7 ISFNSYELGSLQ--AEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEG--RVIQIVLMRAA----E 78 (123)
T ss_dssp EEEEEEECCTTC--CCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCTT--CEEEEEEEEET----T
T ss_pred EEEEEeecccCC--CCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEccc--cEEEEEEEEcc----c
Confidence 444445455444 44789999999999763 45799999999999999999999763 68999999975 7
Q ss_pred ceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEEe
Q 003882 131 DYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWIG 180 (789)
Q Consensus 131 ~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 180 (789)
+++|.+.+.+.+|.............|++|+. .|.|++++.|.
T Consensus 79 ~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~-------~Gkl~l~v~~f 121 (123)
T d1bdya_ 79 DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP-------QAKVLMCVQYF 121 (123)
T ss_dssp EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-------SCEEEEEEEEE
T ss_pred cccCccEEehhheeeccccCCCcccEEEeCCC-------CEEEEEEEEEe
Confidence 89999999999886532222223348999963 58999998875
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.54 E-value=1.1e-14 Score=128.72 Aligned_cols=106 Identities=12% Similarity=0.249 Sum_probs=86.3
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEECCE-----EEeeccccCCCCCccccEEEEEEeCCCceEEEEEEeCCCC
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKYGLK-----WVRTRTLVDNFNPKWNEQYTWEVYDPCTVITLGVFDNCHL 456 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~~~~-----~~~T~~~~~t~~P~wne~~~f~v~~~~~~l~v~v~d~~~~ 456 (789)
.+.|.++++..++. ..+.+||||+|.+++. ..+|+++++|+||+|||+|.|.|.+ ...|.|.|||+|
T Consensus 6 ~~~~~~~~~~~~~~-----~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d-- 77 (123)
T d1bdya_ 6 RISFNSYELGSLQA-----EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA-- 77 (123)
T ss_dssp EEEEEEEECCTTCC-----CCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET--
T ss_pred EEEEEEeecccCCC-----CCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc--
Confidence 55566666666653 3578999999999542 3678899999999999999999976 678999999953
Q ss_pred CCCCCCCCCccEEEEEECcccc-----cCceEeeeEeeeecCCCCCccceEEEEEEEEe
Q 003882 457 GGSGTKPDSRIGKVRIRLSTLE-----ADRIYTHSYPLLVLNPSGVKKMGELQLAVRFT 510 (789)
Q Consensus 457 ~~~~~~~d~~lG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~f~ 510 (789)
++++|.+.|++.++. .+...+.|++|. ++|+|+++++|-
T Consensus 78 -------d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--------~~Gkl~l~v~~f 121 (123)
T d1bdya_ 78 -------EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--------PQAKVLMCVQYF 121 (123)
T ss_dssp -------TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--------SSCEEEEEEEEE
T ss_pred -------ccccCccEEehhheeeccccCCCcccEEEeCC--------CCEEEEEEEEEe
Confidence 579999999999985 356788999995 469999999884
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=7.1e-15 Score=134.84 Aligned_cols=106 Identities=24% Similarity=0.312 Sum_probs=91.1
Q ss_pred ccceEEEEEEEEeecCCCcCCccCCCCCcccCCCccccccccccccCccEEEEEEEEEeecCCCCCCCCCCCeEEEEEEC
Q 003882 168 KVKGEVMLAVWIGTQADEAFPEAWHSDAATVEGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVEPLDKSQLPQAFVEAQVG 247 (789)
Q Consensus 168 ~~~G~l~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~v~~ar~L~~~~~~~~~dpyv~v~l~ 247 (789)
...|+|++++.|. |..+.|.|+|++|+||+..+..+.+||||++++.
T Consensus 4 ~~~G~l~~sl~Y~---------------------------------~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~ 50 (145)
T d1dqva2 4 ADLGELNFSLCYL---------------------------------PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLI 50 (145)
T ss_dssp SCCCEEEEEEEEE---------------------------------TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCC
T ss_pred CcceEEEEEEEEc---------------------------------CCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEc
Confidence 4589999999997 3345799999999999998888999999999996
Q ss_pred C-----eEEeeecccCCCCCCccCceeEEEeeC--CCCCeEEEEEEEccCCCCCCceEEEEEecccc
Q 003882 248 N-----QVLKTKLCPTRTTNPLWNEDLIFVAAE--PFEEQLVLTVENKVTPAKDEPLGRLRLSLNVI 307 (789)
Q Consensus 248 ~-----~~~kT~~~~~~t~nP~wne~f~f~~~~--~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l 307 (789)
. .+++|+++++ +.||.|||.|.|.+.. .....|.|+|+|++..+++++||++.|++..+
T Consensus 51 ~~~~~~~~~kT~~~~~-t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~ 116 (145)
T d1dqva2 51 SEGRRLKKRKTSIKKN-TLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAA 116 (145)
T ss_dssp TTCCTTSCEECCCCCS-CSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTT
T ss_pred cCCccceeecCEEEeC-CCCceecceEEEEEehhhcCCCEEEEEEEecCCCCCCcEEEEEEECchHc
Confidence 4 3578999886 9999999999998753 24567999999999999999999999999866
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.8e-13 Score=119.21 Aligned_cols=109 Identities=20% Similarity=0.286 Sum_probs=84.0
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEECC------eeeeecc--ccCCCCCeeccE-EEE-EccCCCCceEEEEEEeC
Q 003882 55 YLYVRVEKARDLPTNPVSGSCDPYVEVKLGN------YKGKTRH--FEKKSNPEWKQV-FAF-SKEKIQSSVLEVFVRDR 124 (789)
Q Consensus 55 ~L~V~v~~a~~L~~~~~~g~~dpyv~v~~~~------~~~~T~~--~~~t~nP~wne~-f~f-~~~~~~~~~l~v~V~d~ 124 (789)
.|.|+|++|++|+.+ ++||||+|++-+ .+.+|++ ..++.||+|||+ |.| .+..+....|+|.|||+
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~ 77 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE 77 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence 589999999999864 479999999842 2334443 467899999976 444 35555557899999997
Q ss_pred CCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 125 EIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 125 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
+ |++||++.++|..+..+. +|++|.+..|..-..+.|.+.+.+
T Consensus 78 d----~~~lG~~~ipl~~l~~Gy--------R~vpL~~~~g~~l~~~~L~v~i~~ 120 (122)
T d2zkmx2 78 G----NKFLGHRIIPINALNSGY--------HHLCLHSESNMPLTMPALFIFLEM 120 (122)
T ss_dssp T----TEEEEEEEEEGGGBCCEE--------EEEEEECTTCCEEEEEEEEEEEEE
T ss_pred C----CCEEEEEEEEcccCcCCc--------eEEEccCCCcCCCCCceEEEEEEE
Confidence 5 789999999999998763 789999988765456666666654
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1.4e-11 Score=107.99 Aligned_cols=107 Identities=20% Similarity=0.362 Sum_probs=76.7
Q ss_pred EEEEEEEEccCCCCCccCCCCCCcCcEEEEEE-C-----CEEEeeccc--cCCCCCccccE-EEE-EEeCC-CceEEEEE
Q 003882 382 ILEVGILSAQGLLPMKTRDGRGTTDAYCVAKY-G-----LKWVRTRTL--VDNFNPKWNEQ-YTW-EVYDP-CTVITLGV 450 (789)
Q Consensus 382 ~l~v~v~~a~~L~~~~~~~~~~~~dpyv~v~~-~-----~~~~~T~~~--~~t~~P~wne~-~~f-~v~~~-~~~l~v~v 450 (789)
.|+|+|+.|++|+.. +.||||+|++ | .+..+|+++ .+++||.|||. |.| .+..+ ...|.|.|
T Consensus 2 tl~V~Visaq~L~~~-------~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V 74 (122)
T d2zkmx2 2 TLSITVISGQFLSER-------SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV 74 (122)
T ss_dssp EEEEEEEEEESCCSS-------CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred EEEEEEEEeeCCCCC-------CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEE
Confidence 689999999999743 5799999998 2 234555553 46899999986 444 34444 45899999
Q ss_pred EeCCCCCCCCCCCCCccEEEEEECcccccCceEeeeEeeeecCCCCCccceEEEEEEE
Q 003882 451 FDNCHLGGSGTKPDSRIGKVRIRLSTLEADRIYTHSYPLLVLNPSGVKKMGELQLAVR 508 (789)
Q Consensus 451 ~d~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~i~l~~~ 508 (789)
||++ |++||++.|||+.+..| -+++||.+..+... ..+.|-+.++
T Consensus 75 ~D~d---------~~~lG~~~ipl~~l~~G---yR~vpL~~~~g~~l-~~~~L~v~i~ 119 (122)
T d2zkmx2 75 MEEG---------NKFLGHRIIPINALNSG---YHHLCLHSESNMPL-TMPALFIFLE 119 (122)
T ss_dssp EETT---------TEEEEEEEEEGGGBCCE---EEEEEEECTTCCEE-EEEEEEEEEE
T ss_pred ECCC---------CCEEEEEEEEcccCcCC---ceEEEccCCCcCCC-CCceEEEEEE
Confidence 9953 57999999999999876 46789976533211 2345554443
|
| >d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Fantom species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.07 E-value=0.55 Score=39.53 Aligned_cols=120 Identities=10% Similarity=0.042 Sum_probs=80.8
Q ss_pred eEEEEEEEEeeCCCC----CCCCCCCCcEEEEEECCeeeeeccccCCCCCeeccEEEEEccCC-------CCceEEEEEE
Q 003882 54 FYLYVRVEKARDLPT----NPVSGSCDPYVEVKLGNYKGKTRHFEKKSNPEWKQVFAFSKEKI-------QSSVLEVFVR 122 (789)
Q Consensus 54 ~~L~V~v~~a~~L~~----~~~~g~~dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~~~~~-------~~~~l~v~V~ 122 (789)
..+.++|.++.=-+. .+ .+.+--||.+.+-+..-.|..+....+|.+|-+-.|.+... ....+.++|+
T Consensus 10 nlfEihi~~~~~s~e~l~~~~-d~~p~tF~T~~Fyd~Etq~TPv~~g~~p~ynfts~Y~V~~d~~fl~YL~~~~~~lelh 88 (142)
T d2yrba1 10 NLFEIHINKVTFSSEVLQASG-DKEPVTFCTYAFYDFELQTTPVVRGLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVH 88 (142)
T ss_dssp EEEEEEEEEECCCHHHHHHHC-SSCCEEEEEECSTTCCCEECCCEESSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEE
T ss_pred cEEEEEEeeEEEcHHHHhhcc-CCCCcEEEEEEEEeeeeecCceecCCCCcceeEEEEEEccCHHHHHHHhhCCEEEEEE
Confidence 778899988732111 11 23344577777767655555555688999999999987432 4678999999
Q ss_pred eCCCCCCCceeEEEEEEccccCCCCCCCCCCCCeeEEcccCCCCCccceEEEEEEEE
Q 003882 123 DREIVGRDDYIGKVVFDMNEVPTRVPPDSPLAPQWYRLEDRRDDRKVKGEVMLAVWI 179 (789)
Q Consensus 123 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 179 (789)
.... .....++.+.|.+.++..+... ...--.|.+..++...-|.|..-+++
T Consensus 89 qa~g-~~~~tvA~g~i~l~~lLd~~~r----~~~s~~l~g~~~~~~~~G~leyw~rl 140 (142)
T d2yrba1 89 QAYS-TEYETIAACQLKFHEILEKSGR----IFCTASLIGTKGDIPNFGTVEYWFRL 140 (142)
T ss_dssp EECS-SCEEEEEEEEECCSHHHHCCSC----EEEEEEECBSSSCCTTSEEEEEEEEE
T ss_pred eecC-CCcceeEEEEEEhhHhhCcccc----ccceeEEEccCCCcceEEEEEEEEEE
Confidence 8774 2456899999999998875321 22455677766654567888766654
|