Citrus Sinensis ID: 003886
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 789 | 2.2.26 [Sep-21-2011] | |||||||
| Q8R146 | 732 | Acylamino-acid-releasing | yes | no | 0.788 | 0.849 | 0.340 | 6e-91 | |
| P13676 | 732 | Acylamino-acid-releasing | yes | no | 0.784 | 0.845 | 0.330 | 7e-88 | |
| P19205 | 732 | Acylamino-acid-releasing | yes | no | 0.782 | 0.842 | 0.326 | 8e-86 | |
| P13798 | 732 | Acylamino-acid-releasing | yes | no | 0.784 | 0.845 | 0.317 | 7e-84 | |
| P80227 | 730 | Acylamino-acid-releasing | yes | no | 0.782 | 0.845 | 0.327 | 2e-83 | |
| P39839 | 657 | Uncharacterized peptidase | yes | no | 0.228 | 0.273 | 0.319 | 7e-24 | |
| P34422 | 740 | Dipeptidyl peptidase fami | no | no | 0.237 | 0.252 | 0.302 | 5e-16 | |
| Q9YBQ2 | 582 | Acylamino-acid-releasing | no | no | 0.223 | 0.302 | 0.268 | 5e-12 | |
| B2RJX3 | 732 | Prolyl tripeptidyl peptid | no | no | 0.300 | 0.323 | 0.235 | 2e-10 | |
| Q7MUW6 | 732 | Prolyl tripeptidyl peptid | no | no | 0.300 | 0.323 | 0.235 | 7e-10 |
| >sp|Q8R146|APEH_MOUSE Acylamino-acid-releasing enzyme OS=Mus musculus GN=Apeh PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 335 bits (860), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 233/685 (34%), Positives = 347/685 (50%), Gaps = 63/685 (9%)
Query: 116 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP- 174
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLDRMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 175 ---ENESPIQFELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230
E E+W +++ K F++ HG VY D F +SW+ ET + YVAE+
Sbjct: 111 GAVSGEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKKR 170
Query: 231 PSKPTF--------SLGSTKGGSSDKDCNSWKG-QGDWEEDWGETYAGKRQPSLFVININ 281
P +F S + K + KG Q + EDWGET K P L V++I
Sbjct: 171 PKAESFFQTKALDVSASDEEMARPKKPDQAIKGDQFVFYEDWGETMVSKSIPVLCVLDIE 230
Query: 282 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 341
SG + ++G+P+++S GQ WAP + G+ VFVGW E +LGI+YC NR ALY V
Sbjct: 231 SGNISVLEGVPENVSPGQAFWAPGDTGV----VFVGWWHEPFRLGIRYCTNRRSALYYVD 286
Query: 342 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401
+S K E S E L V + PR SPD +V+L S H
Sbjct: 287 LSGGKCELL-------SDESLAVCS----------PRLSPDQCRVVYLQYPSL---APHH 326
Query: 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 461
L DW T +SL +VD++P G+ F G+Y S + W +D ++
Sbjct: 327 QCSQLFLYDWYTK--VTSL--VVDIVPR---QLGESFSGIYCSLLPLGCWSADSQRVVFD 379
Query: 462 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521
S+ S Q + +V+ +G + +T S SW LLT+D D ++A S+P P +K G+
Sbjct: 380 SVQRSRQDLFAVDTQTGSVTSLTAGGSAGSWKLLTIDRDLMVAQFSTPNLPPSLKVGFLP 439
Query: 522 DKANKGTWSWLNV--SSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAI 579
+ + SW+++ + PI ++ ++ P + A FEAI
Sbjct: 440 PAGKEQSVSWVSLEEAEPIPDIHWGIR---------VLHPPPDQENVQY---ADLDFEAI 487
Query: 580 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 639
+ S+ D S P++V+ HGGPHS ++++ A L +G+++L+VNYRGS GFG+++
Sbjct: 488 LLQPSNSPDKSQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDS 547
Query: 640 LQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 699
+ SLPG VG QDV DV A+ V+ + +V ++GGSHGGFL+ HLIGQ P+ + A
Sbjct: 548 ILSLPGNVGHQDVKDVQFAVQQVLQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSAC 607
Query: 700 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK 759
ARNP+ N+ M+GTTDIPDWC VE+ D P + L KSPI +I +VK
Sbjct: 608 IARNPVINIVSMMGTTDIPDWCMVETGFPYSNDYL---PDLNVLEEMLDKSPIKYIPQVK 664
Query: 760 TPTIFLLGAQDLRVPVSNGLQVIYH 784
TP + +LG +D RVP GL+ YH
Sbjct: 665 TPVLLMLGQEDRRVPFKQGLE-YYH 688
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Mus musculus (taxid: 10090) EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1 |
| >sp|P13676|ACPH_RAT Acylamino-acid-releasing enzyme OS=Rattus norvegicus GN=Apeh PE=1 SV=1 | Back alignment and function description |
|---|
Score = 325 bits (834), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 225/681 (33%), Positives = 344/681 (50%), Gaps = 62/681 (9%)
Query: 116 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP- 174
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLERMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 175 ---ENESPIQFELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230
E E+W +++ K F++ HG VY D F +SW+ ET + YVAE+
Sbjct: 111 GTVSGEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKKR 170
Query: 231 PSKPTF--------SLGSTKGGSSDKDCNSWKG-QGDWEEDWGETYAGKRQPSLFVININ 281
P +F S + K + KG Q + EDWGET K P L V++I+
Sbjct: 171 PKAESFFQTKALDISASDDEMARPKKPDQAIKGDQFVFYEDWGETMVSKSIPVLCVLDID 230
Query: 282 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 341
SG + ++G+P+++S GQ WAP + G+ VFVGW E +LGI+YC NR ALY V
Sbjct: 231 SGNISVLEGVPENVSPGQAFWAPGDTGV----VFVGWWHEPFRLGIRYCTNRRSALYYVD 286
Query: 342 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401
+S K E L++ + PR SPD +V+L H
Sbjct: 287 LSGGKCEL-----------------LSDGSLAICSPRLSPDQCRIVYLQYPCL---APHH 326
Query: 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 461
L DW T +VD++P G+ F G+Y S + W +D ++
Sbjct: 327 QCSQLCLYDWYTKVT----SVVVDIVPR---QLGESFSGIYCSLLPLGCWSADSQRVVFD 379
Query: 462 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521
S S Q + +V+ +G + +T A S SW LLT+D D ++A S+P P +K G+
Sbjct: 380 SAQRSRQDLFAVDTQTGSITSLTAAGSAGSWKLLTIDKDLMVAQFSTPSLPPSLKVGFLP 439
Query: 522 DKANKGTWSWLNV--SSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAI 579
+ + SW+++ + PI V+ ++ P + A FEAI
Sbjct: 440 PPGKEQSVSWVSLEEAEPIPGIHWGVR---------VLHPPPDQENVQY---ADLDFEAI 487
Query: 580 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 639
+ S+ D + P++V+ HGGPHS ++++ A L +G+++L+VNYRGS GFG+++
Sbjct: 488 LLQPSNPPDKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDS 547
Query: 640 LQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 699
+ SLPG VG QDV DV A++ V+ + +V ++GGSHGGFL+ HLIGQ P+ + A
Sbjct: 548 ILSLPGNVGHQDVKDVQFAVEQVLQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSAC 607
Query: 700 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK 759
ARNP+ N+A M+G+TDIPDWC VE+ G +S P + KSPI +I +VK
Sbjct: 608 IARNPVINIASMMGSTDIPDWCMVET-GFPYSNSCL--PDLNVWEEMLDKSPIKYIPQVK 664
Query: 760 TPTIFLLGAQDLRVPVSNGLQ 780
TP + +LG +D RVP G++
Sbjct: 665 TPVLLMLGQEDRRVPFKQGME 685
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P19205|ACPH_PIG Acylamino-acid-releasing enzyme OS=Sus scrofa GN=APEH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 318 bits (816), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 223/683 (32%), Positives = 340/683 (49%), Gaps = 66/683 (9%)
Query: 116 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 175
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLERMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 176 N----ESPIQFELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230
E E+W +++ K F++ HG VY D F +SW+ ET + YVA++
Sbjct: 111 GTGTAEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVADKKR 170
Query: 231 PSKPTFSLGSTKG----GSSDKDCNSWKG----QGD---WEEDWGETYAGKRQPSLFVIN 279
P +F TK GS D+ + K +GD + EDWGE K P L V++
Sbjct: 171 PKAESFF--QTKALDVTGSDDEMARTKKPDQAIKGDQFLFYEDWGENMVSKSTPVLCVLD 228
Query: 280 INSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339
I SG + ++G+P+S+S GQ WAP + G+ VFVGW E +LGI++C NR ALY
Sbjct: 229 IESGNISVLEGVPESVSPGQAFWAPGDTGV----VFVGWWHEPFRLGIRFCTNRRSALYY 284
Query: 340 VRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 399
V ++ K E S E + V + PR SPD +V+L S V
Sbjct: 285 VDLTGGKCELL-------SDESVAVTS----------PRLSPDQCRIVYLRFPSLV---P 324
Query: 400 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 459
H L DW T +VD++P G+ F G+Y S + W +D ++
Sbjct: 325 HQQCGQLCLYDWYTRVT----SVVVDIVPR---QLGEDFSGIYCSLLPLGCWSADSQRVV 377
Query: 460 LSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 519
S S Q + +V+ G + +T S SW LLT+D D ++ S+P P +K G+
Sbjct: 378 FDSPQRSRQDLFAVDTQMGSVTSLTAGGSGGSWKLLTIDRDLMVVQFSTPSVPPSLKVGF 437
Query: 520 FVDKANKGTWSWLNV--SSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFE 577
+ SW+++ + P ++ L Q + A FE
Sbjct: 438 LPPAGKEQAVSWVSLEEAEPFPDISWSIRVLQPPPQ------------QEHVQYAGLDFE 485
Query: 578 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE 637
AI + S+ + + P++V+ HGGPHS ++++ A L +G+++L+VNYRGS GFG+
Sbjct: 486 AILLQPSNSPEKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQ 545
Query: 638 EALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFV 697
+++ SLPG VG QDV DV A++ V+ + +V ++GGSHGGFL+ HLIGQ P+ +
Sbjct: 546 DSILSLPGNVGHQDVKDVQFAVEQVLQEEHFDAGRVALMGGSHGGFLSCHLIGQYPETYS 605
Query: 698 AAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK 757
A RNP+ N+A M+G+TDIPDWC VE+ S D P + KSPI + +
Sbjct: 606 ACVVRNPVINIASMMGSTDIPDWCMVEAGFSYSSDCL---PDLSVWAAMLDKSPIKYAPQ 662
Query: 758 VKTPTIFLLGAQDLRVPVSNGLQ 780
VKTP + +LG +D RVP G++
Sbjct: 663 VKTPLLLMLGQEDRRVPFKQGME 685
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Sus scrofa (taxid: 9823) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P13798|ACPH_HUMAN Acylamino-acid-releasing enzyme OS=Homo sapiens GN=APEH PE=1 SV=4 | Back alignment and function description |
|---|
Score = 312 bits (799), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 216/681 (31%), Positives = 336/681 (49%), Gaps = 62/681 (9%)
Query: 116 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 175
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLERMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 176 NESPIQ----FELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230
P + E+W +++ K F++ HG VY D F +SW+ ET + YVAE+
Sbjct: 111 GTGPGEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKKR 170
Query: 231 PSKPTF-SLGSTKGGSSDKDCNSWKG-----QGD---WEEDWGETYAGKRQPSLFVININ 281
P +F + +SD + K +GD + EDWGE K P L V+++
Sbjct: 171 PKAESFFQTKALDVSASDDEIARLKKPDQAIKGDQFVFYEDWGENMVSKSIPVLCVLDVE 230
Query: 282 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 341
SG + ++G+P+++S GQ WAP + G+ VFVGW E +LGI++C NR ALY V
Sbjct: 231 SGNISVLEGVPENVSPGQAFWAPGDAGV----VFVGWWHEPFRLGIRFCTNRRSALYYVD 286
Query: 342 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401
+ K E L++ + PR SPD +V+L S + H
Sbjct: 287 LIGGKCEL-----------------LSDDSLAVSSPRLSPDQCRIVYLQYPSLI---PHH 326
Query: 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 461
L DW T ++ + + G+ F G+Y S + W +D ++
Sbjct: 327 QCSQLCLYDWYTKVTSVVVDVVPRQL-------GENFSGIYCSLLPLGCWSADSQRVVFD 379
Query: 462 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF- 520
S S Q + +V+ G + +T S SW LLT+D D ++A S+P P +K G+
Sbjct: 380 SAQRSRQDLFAVDTQVGTVTSLTAGGSGGSWKLLTIDQDLMVAQFSTPSLPPTLKVGFLP 439
Query: 521 -VDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAI 579
K W L + PI ++ +++ P + + A FEAI
Sbjct: 440 SAGKEQSVLWVSLEEAEPIPDIHWGIR---------VLQPPPEQENVQY---AGLDFEAI 487
Query: 580 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 639
+ D + P++V+ HGGPHS ++++ A L +G+++L+VNYRGS GFG+++
Sbjct: 488 LLQPGSPPDKTQVPMVVMPHGGPHSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDS 547
Query: 640 LQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 699
+ SLPG VG QDV DV A++ V+ + S V ++GGSHGGF++ HLIGQ P+ + A
Sbjct: 548 ILSLPGNVGHQDVKDVQFAVEQVLQEEHFDASHVALMGGSHGGFISCHLIGQYPETYRAC 607
Query: 700 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK 759
ARNP+ N+A M+G+TDIPDWC VE+ D P + KSPI +I +VK
Sbjct: 608 VARNPVINIASMLGSTDIPDWCVVEAGFPFSSDCL---PDLSVWAEMLDKSPIRYIPQVK 664
Query: 760 TPTIFLLGAQDLRVPVSNGLQ 780
TP + +LG +D RVP G++
Sbjct: 665 TPLLLMLGQEDRRVPFKQGME 685
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P80227|ACPH_BOVIN Acylamino-acid-releasing enzyme OS=Bos taurus GN=APEH PE=1 SV=2 | Back alignment and function description |
|---|
Score = 310 bits (795), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 223/681 (32%), Positives = 340/681 (49%), Gaps = 64/681 (9%)
Query: 116 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP- 174
+Q +L + +F ++ + ++ V A VE G SPSG+ V+R
Sbjct: 51 TQRDLERMENIRFCRQYLVFHDGDSVVFAGPAGNSVETRGELLSRESPSGTMKAVLRKAG 110
Query: 175 -ENESPIQFELWSQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232
E E+W +++ K F++ HG VY D F +SW+ ET + YVAE+ P
Sbjct: 111 STGEEKQFLEVWEKNRKLKSFNLSALEKHGPVYEDDCFGCLSWSHSETHLLYVAEKKRPK 170
Query: 233 KPTFSLGSTKG----GSSDKDCNSWKG----QGD---WEEDWGETYAGKRQPSLFVININ 281
+F TK GS D+ K +GD + EDWGE K P L V++I
Sbjct: 171 AESFF--QTKALDISGSDDEMARPKKPDQAIKGDQFLFYEDWGENMVSKGSPVLCVLDIE 228
Query: 282 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 341
SG + ++G+P+S+S GQ WAP + G+ VF GW E +LGI++C NR ALY V
Sbjct: 229 SGNISVLEGVPESVSPGQAFWAPGDTGV----VFAGWWHEPFRLGIRFCTNRRSALYYVD 284
Query: 342 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401
++ EL S + L V + PR SPD +V+L S V H
Sbjct: 285 LT-----GGNCELL--SDDSLAVTS----------PRLSPDQCRIVYLQFPSLV---PHQ 324
Query: 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 461
L DW T ++ + + G+ F G+Y S + W +D ++
Sbjct: 325 QCGQLCLYDWYTRVTVVVVDVVPRQL-------GENFSGIYCSLLPLGCWSADSQRVVFD 377
Query: 462 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF- 520
+ S Q + +V+ G + +T S SW LLT+D D ++A S+P P +K G+
Sbjct: 378 TAQRSRQDLFAVDTQMGTVTPLTAGGSGGSWKLLTIDRDLMVAQFSTPNLPPCLKVGFLP 437
Query: 521 -VDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAI 579
+ W L + PI ++ +++ P + A FEAI
Sbjct: 438 PAGMEQEVVWVSLEEAEPIPDISWSIR---------VLQPPPEQEHAQYVG---LDFEAI 485
Query: 580 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 639
+ S+ D + P++V+ HGGPHS ++S+ A L +G++ L+VNYRGS GFG+++
Sbjct: 486 LIQPSNPPDKTQVPMVVMPHGGPHSSFVTSWMLLPAMLCKMGFAALLVNYRGSTGFGQDS 545
Query: 640 LQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAA 699
+ SLPG VGSQDV DV A++ V+ + +V ++GGSHGGFL+ HLIGQ P+ + A
Sbjct: 546 ILSLPGNVGSQDVKDVQFAVEQVLQEEHFDAGRVALLGGSHGGFLSCHLIGQYPETYGAC 605
Query: 700 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK 759
RNP+ N+A M+G+TDIPDWC VE+ D + P+V + +KSPI + +VK
Sbjct: 606 VVRNPVINIASMMGSTDIPDWCVVEAGYLYSSDCLPD-PNV--WSEMLNKSPIKYTPQVK 662
Query: 760 TPTIFLLGAQDLRVPVSNGLQ 780
TP + +LG +D RVP G++
Sbjct: 663 TPVLLMLGQEDRRVPFKQGME 683
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. It preferentially cleaves off Ac-Ala, Ac-Met and Ac-Ser. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|P39839|YUXL_BACSU Uncharacterized peptidase YuxL OS=Bacillus subtilis (strain 168) GN=yuxL PE=3 SV=3 | Back alignment and function description |
|---|
Score = 113 bits (282), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 102/191 (53%), Gaps = 11/191 (5%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
PLI+ +HGGPH + +Y L++ GY+++ +N RGS G+G+E + ++ G G +D
Sbjct: 431 PLILNIHGGPHMMYGHTYFHEFQVLAAKGYAVVYINPRGSHGYGQEFVNAVRGDYGGKDY 490
Query: 653 NDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
+DV+ A+D I +P ++ V GGS+GGF+T ++GQ ++F AA + + N
Sbjct: 491 DDVMQAVDEAIKRDPHIDPKRLGVTGGSYGGFMTNWIVGQT-NRFKAAVTQRSISNWISF 549
Query: 712 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 771
G +DI G D E ED + +SP+ + + V+TP + L G +D
Sbjct: 550 HGVSDI---------GYFFTDWQLEHDMFEDTEKLWDRSPLKYAANVETPLLILHGERDD 600
Query: 772 RVPVSNGLQVI 782
R P+ Q+
Sbjct: 601 RCPIEQAEQLF 611
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P34422|DPF6_CAEEL Dipeptidyl peptidase family member 6 OS=Caenorhabditis elegans GN=dpf-6 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 98/205 (47%), Gaps = 18/205 (8%)
Query: 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653
+IV++HGGP + +S A+L++ GYS+L VN+RGS GFG+ + G+ G +
Sbjct: 431 MIVLVHGGPKARDHYGFSPMNAWLTNRGYSVLQVNFRGSTGFGKRLTNAGNGEWGRKMHF 490
Query: 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 713
D+L A++ + G+AN S+V V+GGS+GG+ T + P F NL +V
Sbjct: 491 DILDAVEFAVSKGIANRSEVAVMGGSYGGYETLVALTFTPQTFACGVDIVGPSNLISLVQ 550
Query: 714 TTDIPDWC-----YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 768
P W ++ G+ D E S+SP+ +V P + + GA
Sbjct: 551 AIP-PYWLGFRKDLIKMVGADISDE-------EGRQSLQSRSPLFFADRVTKPIMIIQGA 602
Query: 769 QDLRVPVSNGLQVI-----YHIPFS 788
D RV + Q + HIP +
Sbjct: 603 NDPRVKQAESDQFVAALEKKHIPVT 627
|
Removes N-terminal dipeptides sequentially from polypeptides (By similarity). Essential for control of distal tip cell migration. Caenorhabditis elegans (taxid: 6239) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: - |
| >sp|Q9YBQ2|APEH_AERPE Acylamino-acid-releasing enzyme OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_1547.1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 73.9 bits (180), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 14/190 (7%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P +V++HGGP + S+ A L++ G+ +++ NYRGS G+GEE + G ++
Sbjct: 361 PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGEL 420
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
DV A + GLA S++ ++G S+GG++T + P F A A
Sbjct: 421 EDVSAAARWARESGLA--SELYIMGYSYGGYMTLCALTMKPGLFKAGVA----------- 467
Query: 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 772
+ DW + +F E + S+SPI+H+ ++K P + D R
Sbjct: 468 -GASVVDWEEMYELSDAAFRNFIEQLTGGSREIMRSRSPINHVDRIKEPLALIHPQNDSR 526
Query: 773 VPVSNGLQVI 782
P+ L+++
Sbjct: 527 TPLKPLLRLM 536
|
This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N-acetylated amino acid and a peptide with a free N-terminus. Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 9 EC: . EC: 1 |
| >sp|B2RJX3|PTP_PORG3 Prolyl tripeptidyl peptidase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=ptpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 115/276 (41%), Gaps = 39/276 (14%)
Query: 473 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWL 532
+++ G+ +TP ES + L+ DG II + SP +V V KG+++ L
Sbjct: 413 IDIKGGKTKDLTP-ESGMHRTQLSPDGSAIIDIFQSPTVPRKVT----VTNIGKGSYTLL 467
Query: 533 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCD 592
++ P+ ++ R +IM Q P H
Sbjct: 468 E-----AKNPDTGYAMPEIRTGTIM-----------AADGQTPLYYKLTMPLHFDPAKKY 511
Query: 593 PLIVVLHGGPHSVSLSSYSKSLA-----FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647
P+IV ++GGPH+ ++ +S +++ GY++ V+ RGS G Q + ++
Sbjct: 512 PVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRL 571
Query: 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707
G ++ D + +D + + ++ V G S+GGF+TT+L+ D F A P+
Sbjct: 572 GQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVI- 630
Query: 708 LALMVGTTDIPDWCYVE-SYGSKGKDSFTESPSVED 742
DW E YG + D+ E+P D
Sbjct: 631 -----------DWNRYEIMYGERYFDAPQENPEGYD 655
|
Serine proteinase. Releases tripeptides from the free amino terminus of proteins. Has a requirement for Pro in the P1 position, but is inactivated by Pro in the P1' position. Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) (taxid: 431947) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 2 |
| >sp|Q7MUW6|PTP_PORGI Prolyl tripeptidyl peptidase OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) GN=ptpA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 66.6 bits (161), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 114/276 (41%), Gaps = 39/276 (14%)
Query: 473 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWL 532
+++ G+ +TP ES + L+ DG II + SP +V V KG+ + L
Sbjct: 413 IDIKGGKTKDLTP-ESGMHRTQLSPDGSAIIDIFQSPTVPRKVT----VTNIGKGSHTLL 467
Query: 533 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCD 592
++ P+ ++ R +IM Q P H
Sbjct: 468 E-----AKNPDTGYAMPEIRTGTIM-----------AADGQTPLYYKLTMPLHFDPAKKY 511
Query: 593 PLIVVLHGGPHSVSLSSYSKSLA-----FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647
P+IV ++GGPH+ ++ +S +++ GY++ V+ RGS G Q + ++
Sbjct: 512 PVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRL 571
Query: 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707
G ++ D + +D + + ++ V G S+GGF+TT+L+ D F A P+
Sbjct: 572 GQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVI- 630
Query: 708 LALMVGTTDIPDWCYVE-SYGSKGKDSFTESPSVED 742
DW E YG + D+ E+P D
Sbjct: 631 -----------DWNRYEIMYGERYFDAPQENPEGYD 655
|
Serine proteinase. Releases tripeptides from the free amino terminus of proteins. Has a requirement for Pro in the P1 position, but is inactivated by Pro in the P1' position. Porphyromonas gingivalis (strain ATCC BAA-308 / W83) (taxid: 242619) EC: 3 EC: . EC: 4 EC: . EC: 1 EC: 4 EC: . EC: 1 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 789 | ||||||
| 359477374 | 822 | PREDICTED: acylamino-acid-releasing enzy | 0.968 | 0.929 | 0.727 | 0.0 | |
| 356536605 | 766 | PREDICTED: acylamino-acid-releasing enzy | 0.894 | 0.921 | 0.727 | 0.0 | |
| 255551973 | 771 | acylamino-acid-releasing enzyme, putativ | 0.915 | 0.936 | 0.732 | 0.0 | |
| 356534785 | 758 | PREDICTED: acylamino-acid-releasing enzy | 0.898 | 0.935 | 0.695 | 0.0 | |
| 357487227 | 832 | Acylamino-acid-releasing enzyme [Medicag | 0.896 | 0.849 | 0.722 | 0.0 | |
| 357487225 | 768 | Acylamino-acid-releasing enzyme [Medicag | 0.896 | 0.920 | 0.722 | 0.0 | |
| 357487229 | 810 | Acylamino-acid-releasing enzyme [Medicag | 0.894 | 0.871 | 0.641 | 0.0 | |
| 297804842 | 763 | hypothetical protein ARALYDRAFT_915409 [ | 0.904 | 0.935 | 0.656 | 0.0 | |
| 42566792 | 764 | acylaminoacyl-peptidase [Arabidopsis tha | 0.906 | 0.935 | 0.649 | 0.0 | |
| 78708638 | 839 | prolyl oligopeptidase family protein, ex | 0.906 | 0.852 | 0.615 | 0.0 |
| >gi|359477374|ref|XP_002284013.2| PREDICTED: acylamino-acid-releasing enzyme-like isoform 1 [Vitis vinifera] gi|297737147|emb|CBI26348.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1118 bits (2892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/772 (72%), Positives = 643/772 (83%), Gaps = 8/772 (1%)
Query: 12 TSDWCANQLLPRISPSFLSRHRHTRFTVAKPAYFSYKRLSVFLAMDASKAAPAKQVSSVL 71
TS+W + LL R PSF +R R T +P S + LS L M + ++ K+V +
Sbjct: 10 TSEWRVSSLLARFPPSFSAR----RSTPLRPFSVSARSLSTSLVMASCGSSSMKEVPLGI 65
Query: 72 DATAEEEYASLSKLLQDFTNISSIDKAWTF-NSGNGNGTQAMFSISQPNLLANKRKKFML 130
D EE YAS SKLL++FT+I+SIDKAWTF G G+QAMFSISQ NLLANKR+K +L
Sbjct: 66 DPAMEETYASQSKLLKEFTSIASIDKAWTFKRDSGGKGSQAMFSISQTNLLANKRRKQIL 125
Query: 131 STVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL 190
S ISKE+++SV FQWAPFP+EM G S +VPSPSGSKLLVVRNPENESP QFE+W SQL
Sbjct: 126 SAHISKESDHSVNFQWAPFPIEMMGVSTMVPSPSGSKLLVVRNPENESPTQFEIWGPSQL 185
Query: 191 EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS-LGSTKGGSSDKD 249
EKEF+VPQ+VHGSVY DGWFEGISWNSDETLIAYVAEEPSPSKPTF G KG S+DK+
Sbjct: 186 EKEFNVPQSVHGSVYTDGWFEGISWNSDETLIAYVAEEPSPSKPTFGGSGYKKGDSADKE 245
Query: 250 CNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 309
SWKG G+WEE WGETYAGKRQP+LFVINI SGEV AV+GI KSLS+GQV+WAPL EG
Sbjct: 246 SGSWKGLGEWEEHWGETYAGKRQPALFVINIESGEVHAVEGISKSLSIGQVIWAPLAEGF 305
Query: 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 369
QYLVFVGWSSETRKLGIKYCYNRPCALYAVR +S+A+EL+ K + +ED VVNLT+
Sbjct: 306 SQYLVFVGWSSETRKLGIKYCYNRPCALYAVRAPFCESKANELQSKSNVNEDSTVVNLTQ 365
Query: 370 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429
SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI WPT+G IVDVIPV
Sbjct: 366 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIAWPTDGKPCPSANIVDVIPV 425
Query: 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESN 489
+ CAE FPGLY SSILSNPWLSDGCTM+LSS W S+QVI+SV+V SG + ++P +S
Sbjct: 426 MMCAEDGYFPGLYCSSILSNPWLSDGCTMILSSAWHSTQVILSVDVLSGNVSHVSPNDSG 485
Query: 490 FSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKG-TWSWLNVSSPISRCPEKVKSL 548
FSW++LTLDGDNI+AV SSP+D+P++KYG+ +K +WSWL+VS+PI RC EK++SL
Sbjct: 486 FSWNVLTLDGDNIVAVCSSPIDIPEMKYGWLAEKTTASDSWSWLDVSNPIPRCSEKIRSL 545
Query: 549 LSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS 608
LSS QFSIMKIPVK VS LTKG+ KPFEAIFVSS+ K D +CDPLIVVLHGGPHSVS S
Sbjct: 546 LSSLQFSIMKIPVKDVSDCLTKGSCKPFEAIFVSSNKKND-TCDPLIVVLHGGPHSVSSS 604
Query: 609 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668
S+SK+LAFLSS+GYSLLIVNYRGSLGFGEEALQSLPGK+GSQDVNDVLTAIDHVIDMGL
Sbjct: 605 SFSKNLAFLSSLGYSLLIVNYRGSLGFGEEALQSLPGKIGSQDVNDVLTAIDHVIDMGLC 664
Query: 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728
+PSK+ VVGGSHGGFLT+HLIGQAPDKF AA RNP+CNLALMVGTTDIPDWC+VE+YGS
Sbjct: 665 DPSKIAVVGGSHGGFLTSHLIGQAPDKFAVAAVRNPVCNLALMVGTTDIPDWCFVEAYGS 724
Query: 729 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780
+GK+SFTE+PS E LT HSKSP+SHI KVKTPT+FLLGAQDLRVPVSNGL
Sbjct: 725 QGKNSFTEAPSAEQLTLLHSKSPVSHIHKVKTPTLFLLGAQDLRVPVSNGLH 776
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356536605|ref|XP_003536827.1| PREDICTED: acylamino-acid-releasing enzyme-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1071 bits (2770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/716 (72%), Positives = 616/716 (86%), Gaps = 10/716 (1%)
Query: 73 ATAEEEYASLSKLLQDFTNISSIDKAWTFNS----GNGNGTQAMFSISQPNLLANKRKKF 128
A AE+EYA S LLQ+FT IS+IDKAW F S + + + AMF +SQPNLL NKRKK
Sbjct: 7 AAAEQEYALHSTLLQEFTAISAIDKAWLFKSHTHTASASSSHAMFCVSQPNLLVNKRKKS 66
Query: 129 MLS-TVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ 187
++S T++++ + +SVTFQWAPFP++++G SA+VPSPSGSKLL+VRNPE++ P +FE+WS
Sbjct: 67 IVSATILTQNDASSVTFQWAPFPIQVSGVSAMVPSPSGSKLLIVRNPESDGPCRFEIWSS 126
Query: 188 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL--GSTKGGS 245
SQL+KEFH+P + HGSVY DGWFEGISWNSDET IAYVAEEP+P+KPTF+ G K GS
Sbjct: 127 SQLQKEFHIPPSKHGSVYTDGWFEGISWNSDETCIAYVAEEPAPTKPTFNDLGGYKKAGS 186
Query: 246 SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 305
S+KDC +WKGQG+WEEDWGETYAGKRQP+ FVININSGEVQAVKGI KSLSVGQVVWAP
Sbjct: 187 SEKDCGTWKGQGEWEEDWGETYAGKRQPAPFVININSGEVQAVKGIDKSLSVGQVVWAPS 246
Query: 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV 365
EG Q+LVFVGW+ ETRKLGIKYCYNRPCALY V+ ++S+A+E E+ S+ED+ V
Sbjct: 247 TEGSAQHLVFVGWTFETRKLGIKYCYNRPCALYVVKAPHHESKANETEIH--STEDVQAV 304
Query: 366 NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 425
NLT++ISSAFFPRFSPDGKFLVF+SA+SSVDSG HSATDSLHRIDWP + KI +
Sbjct: 305 NLTQTISSAFFPRFSPDGKFLVFVSARSSVDSGVHSATDSLHRIDWPEDSKLYKSAKIHE 364
Query: 426 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 485
VIPVV AE FPGLY S+ILS+PWLSDG T++++SIW SSQV++S+NV SGELLRITP
Sbjct: 365 VIPVVLFAEDGGFPGLYCSTILSDPWLSDGYTLVIASIWHSSQVLLSINVLSGELLRITP 424
Query: 486 AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA-NKGTWSWLNVSSPISRCPEK 544
A+SNFSWSLL LDG+NI+AVSSSPVDVPQ+KYG V KA N WSW +V++PI +C +K
Sbjct: 425 ADSNFSWSLLALDGNNILAVSSSPVDVPQIKYGAIVKKAANNKEWSWSDVANPIFKCSDK 484
Query: 545 VKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS 604
V+SL+SS FSIMKI VK +SA+LTKGA +P+EAIFVSS KK + DPLIVVLHGGPH+
Sbjct: 485 VRSLISSLTFSIMKISVKDISASLTKGASQPYEAIFVSSKTKKSDALDPLIVVLHGGPHT 544
Query: 605 VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 664
VSLSS+SK LA+LSS+GYSLLIVNYRGSLGFGEEALQSLPGK GSQDVNDVLTAIDHVI+
Sbjct: 545 VSLSSFSKPLAYLSSLGYSLLIVNYRGSLGFGEEALQSLPGKAGSQDVNDVLTAIDHVIN 604
Query: 665 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 724
+GLA+PSK+ V+GGSHGGFLTTHLIGQAP+KFVAAAARNP+CNLALMVGTTDIPDWCYVE
Sbjct: 605 LGLASPSKIAVLGGSHGGFLTTHLIGQAPEKFVAAAARNPVCNLALMVGTTDIPDWCYVE 664
Query: 725 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780
+YG+KG+D FTE+PS EDLT F+SKSPI+H+SKVKTPTIFLLGAQDLRVP+S GLQ
Sbjct: 665 TYGTKGRDKFTEAPSAEDLTLFYSKSPIAHLSKVKTPTIFLLGAQDLRVPISTGLQ 720
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255551973|ref|XP_002517031.1| acylamino-acid-releasing enzyme, putative [Ricinus communis] gi|223543666|gb|EEF45194.1| acylamino-acid-releasing enzyme, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1064 bits (2752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 533/728 (73%), Positives = 610/728 (83%), Gaps = 6/728 (0%)
Query: 56 MDASKAAPAKQVSSVLDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSI 115
MDASKA +++ +DA+ EEEYAS SKLLQ+FT+IS IDKAWTFNS +QA+FSI
Sbjct: 1 MDASKAVSSRESPLGIDASTEEEYASQSKLLQEFTSISRIDKAWTFNSNTDMCSQAIFSI 60
Query: 116 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 175
SQ NLL NKR+KFMLS ISK+ SV FQWAPFP+EMTG S +VPSPSGSKLLV+RNPE
Sbjct: 61 SQANLLVNKRRKFMLSASISKQVSGSVNFQWAPFPIEMTGVSTMVPSPSGSKLLVIRNPE 120
Query: 176 NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235
NESP FE+WSQ Q+EKEFHVPQ+VHGSVY DGWFEGISWNSDETL+A+VAEEPSP KP
Sbjct: 121 NESPTHFEIWSQGQMEKEFHVPQSVHGSVYTDGWFEGISWNSDETLVAFVAEEPSPPKPV 180
Query: 236 FS-LGSTKG-GSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK 293
FS LG G + DKD NSWKGQG+WEE WGETYAGKRQ +LFVI+ +SGEV+ VKGI K
Sbjct: 181 FSGLGYKTGEANKDKDYNSWKGQGEWEEGWGETYAGKRQSALFVISTSSGEVKPVKGIAK 240
Query: 294 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 353
SLSVGQVVWAP + +Q LVFVGWS++ RKLGIKYCYNRPCALYAV+ +Y+SE SE E
Sbjct: 241 SLSVGQVVWAPSTKDSYQCLVFVGWSADPRKLGIKYCYNRPCALYAVQAPVYRSE-SEFE 299
Query: 354 LKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413
LK++ E P +NLT+SISSAF P FSP G+ LVFLSAKSSVDSGAH T SLHRIDWP
Sbjct: 300 LKDNPIEGSPALNLTQSISSAFLPLFSPVGRLLVFLSAKSSVDSGAHMGTGSLHRIDWPV 359
Query: 414 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473
NG SSL KIVDV+PVVQCAE CFPGLY S LSNPWLSDGCTM+LSS+W S +V++S+
Sbjct: 360 NG--SSLPKIVDVVPVVQCAEDGCFPGLYCSGFLSNPWLSDGCTMILSSVWHSCEVLLSI 417
Query: 474 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANK-GTWSWL 532
NV SG++ RI+P +S FSW++L LDGDNIIAVSSSPVD+P ++YG V K + TW+WL
Sbjct: 418 NVLSGDVKRISPIDSKFSWNVLALDGDNIIAVSSSPVDMPGIRYGSLVSKTTENATWNWL 477
Query: 533 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCD 592
+ SSPI RC E+V+SLLSSR F I+KIPVK VS TK A KPFEAI VSS KK+ + D
Sbjct: 478 DASSPIFRCSEEVRSLLSSRHFDILKIPVKDVSGCPTKSASKPFEAIIVSSYSKKNGASD 537
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
PLIV+LHGGPHSVS SS+SKSLAFLSS+GYSLLIVNYRGS+GFGEEALQSLPGKVGSQDV
Sbjct: 538 PLIVMLHGGPHSVSSSSFSKSLAFLSSLGYSLLIVNYRGSIGFGEEALQSLPGKVGSQDV 597
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
NDVLTAIDHVID G+A+PS + V+GGSHGGFLTTHLIGQ+P KFVAAAARNP+CNLA MV
Sbjct: 598 NDVLTAIDHVIDTGIASPSSIAVLGGSHGGFLTTHLIGQSPHKFVAAAARNPVCNLASMV 657
Query: 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 772
GTTDIPDWCYVE+YG+ GK FTE+PS +DL FHSKSPISHISKVK PTIFL+GAQDLR
Sbjct: 658 GTTDIPDWCYVEAYGTGGKSKFTEAPSADDLALFHSKSPISHISKVKAPTIFLIGAQDLR 717
Query: 773 VPVSNGLQ 780
VP+SNGLQ
Sbjct: 718 VPMSNGLQ 725
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534785|ref|XP_003535932.1| PREDICTED: acylamino-acid-releasing enzyme-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1018 bits (2633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/713 (69%), Positives = 585/713 (82%), Gaps = 4/713 (0%)
Query: 71 LDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFML 130
+ E++YA LS LLQDFT I +IDKAW F+S G+ Q MF +SQP+LL NKR+ ++
Sbjct: 1 MHKETEDDYAYLSNLLQDFTIIPNIDKAWLFSSP-GSQLQGMFVVSQPDLLTNKRRTSIM 59
Query: 131 STVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL 190
S I K++++SV F WAPFP+EM+G S +VPSPSGSKLLV+RNPENE+P FE+WS S++
Sbjct: 60 SCNILKQSDSSVKFLWAPFPIEMSGVSMIVPSPSGSKLLVIRNPENEAPCCFEIWSSSRM 119
Query: 191 EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL--GSTKGGSSDK 248
EKEFH+PQ++HGSVY DGWFEG+SWN DET IAYVAEE SP+KPTF+ G KGG +DK
Sbjct: 120 EKEFHIPQSLHGSVYNDGWFEGVSWNLDETCIAYVAEESSPAKPTFNDLGGYKKGGCADK 179
Query: 249 DCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308
D WKGQGDWEEDWGETYAG+R+P+LFVININS +VQ VKGI KSLS+GQVVWAP EG
Sbjct: 180 DLGYWKGQGDWEEDWGETYAGRRRPALFVININSRDVQEVKGIDKSLSIGQVVWAPFTEG 239
Query: 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT 368
QYLVFVGWSS+ RKLGIKYC NRPCALY VRV E+ E S+E+ +NLT
Sbjct: 240 SEQYLVFVGWSSKPRKLGIKYCSNRPCALYTVRVRALHHESKPNEPVVQSTEEFHALNLT 299
Query: 369 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 428
++ISSAFFPRFSPDGKFLVFLSA+S+VDSG H+AT+SLHRIDWPT+G KI D+IP
Sbjct: 300 QTISSAFFPRFSPDGKFLVFLSARSAVDSGVHNATNSLHRIDWPTDGKLFQSSKIYDIIP 359
Query: 429 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 488
VV CAE CFPGLY ++I +NPWLSD CTM++SSIW SS+V++SVNV SGE+L I+PA+S
Sbjct: 360 VVMCAEDGCFPGLYCTTIHNNPWLSDNCTMIISSIWHSSEVLLSVNVLSGEILHISPADS 419
Query: 489 NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKG-TWSWLNVSSPISRCPEKVKS 547
NFSW+LLTLD +NI+A+SSSPVDVPQ+KYG ++KA TWSW N+SSPI RC +KV S
Sbjct: 420 NFSWNLLTLDRNNIVAISSSPVDVPQIKYGMAIEKATSNTTWSWSNISSPIFRCSDKVVS 479
Query: 548 LLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL 607
LLSS Q SI+ I VK V TKGA K FEAIFV+S K DPLIV+LHGGPH VSL
Sbjct: 480 LLSSLQCSILSISVKDVHDGQTKGATKHFEAIFVTSKTKNKDVFDPLIVILHGGPHDVSL 539
Query: 608 SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667
S +SK LAF SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL+AIDHVI++GL
Sbjct: 540 SHFSKYLAFQSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLSAIDHVINLGL 599
Query: 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 727
A+PSK+TV+G SHGGFLTTHLIGQAPDKFVAAAA NP+CNLALM+GTTDIPDWCYVE+ G
Sbjct: 600 ASPSKITVMGISHGGFLTTHLIGQAPDKFVAAAAINPVCNLALMIGTTDIPDWCYVEACG 659
Query: 728 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780
+ K+ FTE PS +DLT F SKSPISH+SKVK PT+FLLGAQD+RVP+ +GLQ
Sbjct: 660 TIAKNCFTEPPSADDLTLFQSKSPISHVSKVKAPTLFLLGAQDIRVPIFDGLQ 712
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357487227|ref|XP_003613901.1| Acylamino-acid-releasing enzyme [Medicago truncatula] gi|355515236|gb|AES96859.1| Acylamino-acid-releasing enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1012 bits (2616), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/713 (72%), Positives = 601/713 (84%), Gaps = 6/713 (0%)
Query: 71 LDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAM-FSISQPNLLANKRKKFM 129
+D E++Y+ S LLQ FT+ISSIDK+W FNS + +Q M FS+SQPNLLANK++KF+
Sbjct: 77 IDEETEQQYSLHSNLLQQFTSISSIDKSWIFNSNTDSSSQGMMFSVSQPNLLANKKRKFI 136
Query: 130 LSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ 189
LS+ ++K ++ SV WAPFPVEMTG S +VPSPSGSKLL+VRNPE + +FE+WS S
Sbjct: 137 LSSTVNKRSDGSVGLDWAPFPVEMTGVSVMVPSPSGSKLLIVRNPEGDGGCKFEIWSNSC 196
Query: 190 LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS-LGSTKGGSSDK 248
LE EF VPQ+ HGSVYADGWFEGISWNSDET IAYVAEEPSP+KPTF+ G GS DK
Sbjct: 197 LENEFSVPQSKHGSVYADGWFEGISWNSDETRIAYVAEEPSPAKPTFNDQGYKVSGSDDK 256
Query: 249 DCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308
D +SWKGQGDWEEDWGETYAGKRQP+LFVINI SGEVQAVKGI KSLSVGQVVWAP +EG
Sbjct: 257 DSSSWKGQGDWEEDWGETYAGKRQPALFVINITSGEVQAVKGIDKSLSVGQVVWAPSSEG 316
Query: 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT 368
QYLVFVGWS ETRKLGIKYCYNR CALYAV+ ++S+ +E E++ ++ED+ + LT
Sbjct: 317 SAQYLVFVGWSYETRKLGIKYCYNRACALYAVKAP-HESKPNENEIQ--ATEDVQALKLT 373
Query: 369 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 428
++ISSAF PRFSPDG FLVFLSA+SSVDSGAHSAT+SLHRIDWP + K+ DVIP
Sbjct: 374 QTISSAFLPRFSPDGNFLVFLSARSSVDSGAHSATNSLHRIDWPKDVKLYQSAKVHDVIP 433
Query: 429 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 488
VV CA+ D FPGLY SSILS+PWLSDG T+++ S+W SSQV++SVNV SG++ RITPA+S
Sbjct: 434 VVLCADDDGFPGLYFSSILSDPWLSDGHTLIIPSVWHSSQVLLSVNVFSGQIKRITPADS 493
Query: 489 NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK-ANKGTWSWLNVSSPISRCPEKVKS 547
NFSWSLLTL G+NI AVSSSPVDVPQVKYG FV+K W W +VS+PI +C +KV+S
Sbjct: 494 NFSWSLLTLHGNNIFAVSSSPVDVPQVKYGTFVEKEGGNSEWRWSDVSNPIYKCSDKVRS 553
Query: 548 LLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL 607
LLSS FSIMKI VK S N TKG+ KP+E+IFVSS KK +CDPLIVVLHGGPHSVSL
Sbjct: 554 LLSSLTFSIMKISVKEASENPTKGSCKPYESIFVSSKTKKSDACDPLIVVLHGGPHSVSL 613
Query: 608 SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667
SS+SKS AFLSS+GYSLLIVNYRGSLGFGEEALQSLPG +GSQDVNDVL+AIDHVID+GL
Sbjct: 614 SSFSKSQAFLSSLGYSLLIVNYRGSLGFGEEALQSLPGNIGSQDVNDVLSAIDHVIDLGL 673
Query: 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 727
A+PSK+ V+GGSHGGFLTTHLIGQAP+KFVAAAARNP+CNL LMVGTTDIPDWC+VESYG
Sbjct: 674 ASPSKIAVLGGSHGGFLTTHLIGQAPEKFVAAAARNPVCNLELMVGTTDIPDWCFVESYG 733
Query: 728 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780
+ G+D TE+PS EDLT F+SKSPI+H+SKVKTPT+FLLGAQDLRVP+S GLQ
Sbjct: 734 TNGRDRITEAPSAEDLTLFYSKSPIAHLSKVKTPTVFLLGAQDLRVPISTGLQ 786
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357487225|ref|XP_003613900.1| Acylamino-acid-releasing enzyme [Medicago truncatula] gi|355515235|gb|AES96858.1| Acylamino-acid-releasing enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1011 bits (2615), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/713 (72%), Positives = 601/713 (84%), Gaps = 6/713 (0%)
Query: 71 LDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAM-FSISQPNLLANKRKKFM 129
+D E++Y+ S LLQ FT+ISSIDK+W FNS + +Q M FS+SQPNLLANK++KF+
Sbjct: 13 IDEETEQQYSLHSNLLQQFTSISSIDKSWIFNSNTDSSSQGMMFSVSQPNLLANKKRKFI 72
Query: 130 LSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ 189
LS+ ++K ++ SV WAPFPVEMTG S +VPSPSGSKLL+VRNPE + +FE+WS S
Sbjct: 73 LSSTVNKRSDGSVGLDWAPFPVEMTGVSVMVPSPSGSKLLIVRNPEGDGGCKFEIWSNSC 132
Query: 190 LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS-LGSTKGGSSDK 248
LE EF VPQ+ HGSVYADGWFEGISWNSDET IAYVAEEPSP+KPTF+ G GS DK
Sbjct: 133 LENEFSVPQSKHGSVYADGWFEGISWNSDETRIAYVAEEPSPAKPTFNDQGYKVSGSDDK 192
Query: 249 DCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308
D +SWKGQGDWEEDWGETYAGKRQP+LFVINI SGEVQAVKGI KSLSVGQVVWAP +EG
Sbjct: 193 DSSSWKGQGDWEEDWGETYAGKRQPALFVINITSGEVQAVKGIDKSLSVGQVVWAPSSEG 252
Query: 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT 368
QYLVFVGWS ETRKLGIKYCYNR CALYAV+ ++S+ +E E++ ++ED+ + LT
Sbjct: 253 SAQYLVFVGWSYETRKLGIKYCYNRACALYAVKAP-HESKPNENEIQ--ATEDVQALKLT 309
Query: 369 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 428
++ISSAF PRFSPDG FLVFLSA+SSVDSGAHSAT+SLHRIDWP + K+ DVIP
Sbjct: 310 QTISSAFLPRFSPDGNFLVFLSARSSVDSGAHSATNSLHRIDWPKDVKLYQSAKVHDVIP 369
Query: 429 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 488
VV CA+ D FPGLY SSILS+PWLSDG T+++ S+W SSQV++SVNV SG++ RITPA+S
Sbjct: 370 VVLCADDDGFPGLYFSSILSDPWLSDGHTLIIPSVWHSSQVLLSVNVFSGQIKRITPADS 429
Query: 489 NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK-ANKGTWSWLNVSSPISRCPEKVKS 547
NFSWSLLTL G+NI AVSSSPVDVPQVKYG FV+K W W +VS+PI +C +KV+S
Sbjct: 430 NFSWSLLTLHGNNIFAVSSSPVDVPQVKYGTFVEKEGGNSEWRWSDVSNPIYKCSDKVRS 489
Query: 548 LLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL 607
LLSS FSIMKI VK S N TKG+ KP+E+IFVSS KK +CDPLIVVLHGGPHSVSL
Sbjct: 490 LLSSLTFSIMKISVKEASENPTKGSCKPYESIFVSSKTKKSDACDPLIVVLHGGPHSVSL 549
Query: 608 SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667
SS+SKS AFLSS+GYSLLIVNYRGSLGFGEEALQSLPG +GSQDVNDVL+AIDHVID+GL
Sbjct: 550 SSFSKSQAFLSSLGYSLLIVNYRGSLGFGEEALQSLPGNIGSQDVNDVLSAIDHVIDLGL 609
Query: 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 727
A+PSK+ V+GGSHGGFLTTHLIGQAP+KFVAAAARNP+CNL LMVGTTDIPDWC+VESYG
Sbjct: 610 ASPSKIAVLGGSHGGFLTTHLIGQAPEKFVAAAARNPVCNLELMVGTTDIPDWCFVESYG 669
Query: 728 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780
+ G+D TE+PS EDLT F+SKSPI+H+SKVKTPT+FLLGAQDLRVP+S GLQ
Sbjct: 670 TNGRDRITEAPSAEDLTLFYSKSPIAHLSKVKTPTVFLLGAQDLRVPISTGLQ 722
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357487229|ref|XP_003613902.1| Acylamino-acid-releasing enzyme [Medicago truncatula] gi|355515237|gb|AES96860.1| Acylamino-acid-releasing enzyme [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 933 bits (2412), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/761 (64%), Positives = 579/761 (76%), Gaps = 55/761 (7%)
Query: 72 DATAEEE-YASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFML 130
DAT E+E YASLS LL FT I +I KAW FNS N TQ MFSI+QP++L NK K +L
Sbjct: 7 DATTEKENYASLSNLLPHFTTIPNIHKAWLFNSHTTN-TQGMFSITQPDVLTNKNKTLIL 65
Query: 131 ST--VISKENENSVTFQWAPFPVEMTG-ASAVVPSPSGSKLLVVRNPENES--PIQFELW 185
S V K + + V F WAPFP+EM G S +VPSPSGSKLLV+RN ++E FE+W
Sbjct: 66 SCNFVKQKSDGSVVEFLWAPFPIEMRGDVSMIVPSPSGSKLLVIRNSDSEGGGSCCFEIW 125
Query: 186 SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS-LGSTKGG 244
S S LEKEF +PQ++HGSVY DGWFEG+SWN DETLIAYVAE PSP+KP F+ G KGG
Sbjct: 126 SSSCLEKEFSIPQSMHGSVYNDGWFEGVSWNLDETLIAYVAEAPSPTKPVFNNTGYKKGG 185
Query: 245 SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 304
++ D WKGQG+WEEDWGETYA KRQP+LFVININSGEVQAVKGI KSLS GQVVWAP
Sbjct: 186 CAENDFGIWKGQGEWEEDWGETYAAKRQPTLFVININSGEVQAVKGIDKSLSAGQVVWAP 245
Query: 305 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV 364
EG QYLVFVGWSS TRKLG+KYC NRPCALYAVR ++S++ E E SS+E+L
Sbjct: 246 FTEGSEQYLVFVGWSSGTRKLGMKYCSNRPCALYAVRAPHHESQSEEPE-HHSSTEELHA 304
Query: 365 VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 424
+NLT +ISSA FPRFSP+GKFLVFLSAKS+V+SG H+AT+SLHRIDWPT+G I
Sbjct: 305 LNLTPTISSALFPRFSPNGKFLVFLSAKSAVNSGVHNATNSLHRIDWPTDGKLYQSANIY 364
Query: 425 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484
D+IPVV CAE CFPGLY +++ +NPWLSD CTM+LSSIW S +V++SVNV SG++LRI+
Sbjct: 365 DIIPVVMCAEDGCFPGLYCTTVHNNPWLSDNCTMILSSIWHSCEVLLSVNVLSGKILRIS 424
Query: 485 PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGT--WSWLNVSSPISRCP 542
PA+SNFSW+LLTLD DNI+A+SS+PV+VPQ+ YG ++K KG WSW +SSPI +C
Sbjct: 425 PADSNFSWNLLTLDEDNILAISSNPVNVPQIMYGMAIEKT-KGNSIWSWSKISSPILKCS 483
Query: 543 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 602
+KV+SLLSS Q SI+KIPV S+N TKGA KPFEAIFVSS K DPLIV+LHGGP
Sbjct: 484 DKVRSLLSSIQCSILKIPVTDGSSNTTKGAAKPFEAIFVSSKTKNKDVFDPLIVILHGGP 543
Query: 603 HSVSLSSYSKSLAFLSSVGYSL-------------------------------LIVNY-- 629
VS S +S S AFLSSVGYSL +I+++
Sbjct: 544 QDVSSSHFSNSWAFLSSVGYSLDLVGTCILQHQNHSIKACLEKKRKTKNTAPCIIISFKD 603
Query: 630 ----------RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGS 679
RGSLGFGEEALQSLPGKVGSQDVNDVL+AIDHVI++G A+PSK+TV+G S
Sbjct: 604 SYKFTTLLFLRGSLGFGEEALQSLPGKVGSQDVNDVLSAIDHVINLGHASPSKITVMGIS 663
Query: 680 HGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS 739
HGGFLTTHLIGQAP+KFVAAAA NP+CNLA+MVGTTDIPDWCYVE++G+ +D F+E+PS
Sbjct: 664 HGGFLTTHLIGQAPEKFVAAAAINPVCNLAMMVGTTDIPDWCYVEAFGTTARDCFSEAPS 723
Query: 740 VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780
EDLT F+SKSPISH+SKVK PT+FLLG QDLRVP +GLQ
Sbjct: 724 AEDLTLFYSKSPISHVSKVKAPTLFLLGGQDLRVPKFDGLQ 764
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297804842|ref|XP_002870305.1| hypothetical protein ARALYDRAFT_915409 [Arabidopsis lyrata subsp. lyrata] gi|297316141|gb|EFH46564.1| hypothetical protein ARALYDRAFT_915409 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 928 bits (2399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/731 (65%), Positives = 590/731 (80%), Gaps = 17/731 (2%)
Query: 56 MDASKAAPAKQVSSVLDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSI 115
MD+ AK+V LD+T EEEYA+ SKLL++F NI SIDKAW FNSG+G +QAMF++
Sbjct: 1 MDSCGTDSAKEVHVGLDSTTEEEYATQSKLLKEFINIPSIDKAWIFNSGSG--SQAMFAM 58
Query: 116 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 175
SQ NLLANKRKKFMLS ISKE+ SV F WAPFPVEMTGASA VPSPSG KLLV+RNPE
Sbjct: 59 SQANLLANKRKKFMLSGHISKESNQSVNFHWAPFPVEMTGASAFVPSPSGLKLLVIRNPE 118
Query: 176 NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235
NESP +FE+W+ S LEKEFH+PQ VHGSVY DGWFEGISWNSDET +AY+AEEPS KPT
Sbjct: 119 NESPTKFEIWNSSHLEKEFHIPQKVHGSVYVDGWFEGISWNSDETRVAYIAEEPSRPKPT 178
Query: 236 FS-LGSTKGGSS-DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK 293
F LG K G+S DKD SWKG+GDWEE+WGE YAGKRQP+LFVI+++SG+V+ +KGIP+
Sbjct: 179 FDHLGYYKKGNSLDKDIGSWKGEGDWEEEWGEAYAGKRQPALFVIDVDSGKVEPIKGIPR 238
Query: 294 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 353
S+SVGQVVW+P + QYLVF GW + RK GIKYCYNRPCA+YA++ + S+ E
Sbjct: 239 SISVGQVVWSPNSNESAQYLVFAGWLGDKRKFGIKYCYNRPCAIYAIK---FISD----E 291
Query: 354 LKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413
K+ ++E P+ NLT+SISS F PRFS DGKFLVF+SAKS+VDSGAH AT+SLHRIDWP+
Sbjct: 292 PKDDANE-FPIHNLTKSISSGFCPRFSKDGKFLVFVSAKSAVDSGAHWATESLHRIDWPS 350
Query: 414 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473
+G IVDVI VV C + CFPGLY + +L +PWLSDG +++LS+ W S +VI+SV
Sbjct: 351 DGKLPESTNIVDVIQVVNCPDDGCFPGLYVTGLLCDPWLSDGHSLILSTYWRSCRVILSV 410
Query: 474 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV-DKANKGTWSWL 532
N+ SGE+ R +P++S++SW+ LDGDNI+AVSSSPV VP++KYG V D A K +W W
Sbjct: 411 NLLSGEVSRASPSDSDYSWTAFALDGDNIVAVSSSPVSVPEIKYGKKVLDSAGKPSWKWS 470
Query: 533 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSH-KKDCSC 591
N+ +PI RC EKV S LSS QF I+K+P+ VS L +GA+KP E I+VSSS K++ C
Sbjct: 471 NIQNPI-RCSEKVMSGLSSLQFKILKVPISDVSEGLAEGAKKPIEVIYVSSSKFKENGKC 529
Query: 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
DPLI VLHGGPHS+S S+S+++A+LSS+GYS LIVNYRGSLG+GE+ALQSLPGKVGSQD
Sbjct: 530 DPLIAVLHGGPHSISPCSFSRNMAYLSSIGYSQLIVNYRGSLGYGEDALQSLPGKVGSQD 589
Query: 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
V DVL A+D+ I+MGLA+PSK+TV+GGSHGGFLTTHLIGQAP+KFVAAAARNP+CN+A M
Sbjct: 590 VKDVLAAVDYAIEMGLADPSKITVLGGSHGGFLTTHLIGQAPNKFVAAAARNPVCNIASM 649
Query: 712 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 771
VG TDIPDWC+ E+YG ++ +TE+PS EDL+RFH SPI+HISK KTPT+FLLG+QDL
Sbjct: 650 VGITDIPDWCFFEAYGD--QNHYTEAPSSEDLSRFHQISPIAHISKAKTPTLFLLGSQDL 707
Query: 772 RVPVSNGLQVI 782
RVP+SNG Q +
Sbjct: 708 RVPISNGFQYV 718
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42566792|ref|NP_193193.2| acylaminoacyl-peptidase [Arabidopsis thaliana] gi|60729672|pir||JC8016 acylaminoacyl-peptidase (EC 3.4.19.1) - Arabidopsis thaliana gi|30466066|dbj|BAC76411.1| acylamino acid-releasing enzyme [Arabidopsis thaliana] gi|332658061|gb|AEE83461.1| acylaminoacyl-peptidase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 923 bits (2386), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/731 (64%), Positives = 584/731 (79%), Gaps = 16/731 (2%)
Query: 56 MDASKAAPAKQVSSVLDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSI 115
MD+S AK++ LD T EEEYA+ SKLLQ+F NI SIDKAW FNS +G +QAMF++
Sbjct: 1 MDSSGTDSAKELHVGLDPTTEEEYATQSKLLQEFINIPSIDKAWIFNSDSG--SQAMFAL 58
Query: 116 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 175
SQ NLLANK+KKFMLS IS E+ SV F WAPFP+EMTGASA VPSPSG KLLV+RNPE
Sbjct: 59 SQANLLANKKKKFMLSGHISNESNQSVNFHWAPFPIEMTGASAFVPSPSGLKLLVIRNPE 118
Query: 176 NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235
NESP +FE+W+ SQLEKEFH+PQ VHGSVY DGWFEGISW+SDET +AYVAEEPS KPT
Sbjct: 119 NESPTKFEIWNSSQLEKEFHIPQKVHGSVYVDGWFEGISWDSDETHVAYVAEEPSRPKPT 178
Query: 236 FS-LGSTKGGSS-DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK 293
F LG K +S DK SWKG+GDWEE+WGE YAGKRQP+LFVIN++SGEV+ +KGIP+
Sbjct: 179 FDHLGYYKKENSLDKGIGSWKGEGDWEEEWGEAYAGKRQPALFVINVDSGEVEPIKGIPR 238
Query: 294 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 353
S+SVGQVVW+P + G QYLVF GW + RK GIKYCYNRPCA+YA++ + E
Sbjct: 239 SISVGQVVWSPNSNGSAQYLVFAGWLGDKRKFGIKYCYNRPCAIYAIKFT-------SDE 291
Query: 354 LKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413
K+ + + P+ NLT+SISS F PRFS DGKFLVF+SAK++VDSGAH AT+SLHRIDWP+
Sbjct: 292 PKDDDANEFPIHNLTKSISSGFCPRFSKDGKFLVFVSAKTAVDSGAHWATESLHRIDWPS 351
Query: 414 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473
+G IVDVI VV C + CFPGLY + +LS+PWLSDG +++LS+ W S +VI+SV
Sbjct: 352 DGKLPESTNIVDVIQVVNCPKDGCFPGLYVTGLLSDPWLSDGHSLMLSTYWRSCRVILSV 411
Query: 474 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY-FVDKANKGTWSWL 532
N+ SGE+ R +P++S++SW+ L LDGD+I+AVSSSPV VP++KYG +D A K +W W
Sbjct: 412 NLLSGEVSRASPSDSDYSWNALALDGDSIVAVSSSPVSVPEIKYGKKGLDSAGKPSWLWS 471
Query: 533 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSH-KKDCSC 591
N+ SPI R EKV + LSS QF I+K+P+ VS L +GA+ P EAI+VSSS K++ C
Sbjct: 472 NIQSPI-RYSEKVMAGLSSLQFKILKVPISDVSEGLAEGAKNPIEAIYVSSSKSKENGKC 530
Query: 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
DPLI VLHGGPHSVS S+S+++A+LSS+GYS LI+NYRGSLG+GE+ALQSLPGKVGSQD
Sbjct: 531 DPLIAVLHGGPHSVSPCSFSRTMAYLSSIGYSQLIINYRGSLGYGEDALQSLPGKVGSQD 590
Query: 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
V D L A+DH I+MG+A+PS++TV+GGSHGGFLTTHLIGQAPDKFVAAAARNP+CN+A M
Sbjct: 591 VKDCLLAVDHAIEMGIADPSRITVLGGSHGGFLTTHLIGQAPDKFVAAAARNPVCNMASM 650
Query: 712 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 771
VG TDIPDWC+ E+YG + +TE+PS EDL+RFH SPISHISKVKTPT+FLLG +DL
Sbjct: 651 VGITDIPDWCFFEAYGDQSH--YTEAPSAEDLSRFHQMSPISHISKVKTPTLFLLGTKDL 708
Query: 772 RVPVSNGLQVI 782
RVP+SNG Q +
Sbjct: 709 RVPISNGFQYV 719
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|78708638|gb|ABB47613.1| prolyl oligopeptidase family protein, expressed [Oryza sativa Japonica Group] gi|222612829|gb|EEE50961.1| hypothetical protein OsJ_31520 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 914 bits (2362), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/731 (61%), Positives = 558/731 (76%), Gaps = 16/731 (2%)
Query: 58 ASKAAPAKQVSSVLDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQ 117
AS+AA K + +D + +EYAS SKLLQ+F I +I AW FNS N ++A+ S+ Q
Sbjct: 70 ASEAATEKGLPLGMDVSMVDEYASQSKLLQEFVKIPTIGNAWIFNSKTENTSRAIVSVGQ 129
Query: 118 PNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE 177
+LLANK++ F+L++ ISK + NSV FQW+PFP+EM+G SAV+PSPSG KLL++RN E++
Sbjct: 130 TDLLANKKRSFLLNSHISKNSSNSVDFQWSPFPIEMSGVSAVIPSPSGRKLLLIRNSEDD 189
Query: 178 SPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 237
SP + E+W QLE E H+ Q+VHGS+Y D WFEGISWN +ETL+AYVAEEP KP F+
Sbjct: 190 SPTKLEVWGPCQLENEIHIAQSVHGSLYVDEWFEGISWNQEETLVAYVAEEPPQPKPEFN 249
Query: 238 -LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLS 296
G K GSS+KDC SWKG+GDWEE WGETY+ KR P+LFV+NI+SGEV+AVKGIP++LS
Sbjct: 250 DSGYKKAGSSEKDCKSWKGKGDWEETWGETYSKKRIPALFVVNISSGEVRAVKGIPRTLS 309
Query: 297 VGQVVWAPLNEGLHQYLVFVGWSSET------RKLGIKYCYNRPCALYAVRVSLYKSEAS 350
VGQV+WAP + LVFV WSS+ RKLGIKYC+NRPCALYAV + EA
Sbjct: 310 VGQVIWAPSSS---HSLVFVAWSSDNGYQKTPRKLGIKYCFNRPCALYAVP-DPFMEEAD 365
Query: 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 410
+ L S E P LT +SSAFFPRFSPDGK+LVF+SAKS++DSG H+AT+S+H+ID
Sbjct: 366 KPSLNVSKGETAPTTKLTSELSSAFFPRFSPDGKYLVFISAKSAIDSGTHNATNSMHKID 425
Query: 411 WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470
WP +G L + DV+P+V C + CFPGLY S IL NPWL+DG TM+LSSIWGS +VI
Sbjct: 426 WPADGKLEGLS-VADVVPIVMCPQDGCFPGLYCSGILRNPWLTDGQTMILSSIWGSKEVI 484
Query: 471 ISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANK-GTW 529
+SVNV S E+ R++P +S++SW++L LD DNI+AVSSS + VPQ+ YG V + K W
Sbjct: 485 LSVNVVSREVSRVSPQDSDYSWNVLALDKDNILAVSSSLITVPQIYYGSEVCQTGKPNQW 544
Query: 530 SWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDC 589
W +++P +K+ ++L+ +FSI+KIP+ S L GA+ PFEAIFVS KD
Sbjct: 545 EWQEIATPFPSPSDKISAILADHKFSILKIPISNSSNKLADGAKLPFEAIFVS---WKDS 601
Query: 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649
+ P IVVLHGGPH+V SSYSKSLAFL S GY+LL+VNYRGSLGFGEEALQSLPG +GS
Sbjct: 602 ATRPTIVVLHGGPHTVYPSSYSKSLAFLYSQGYNLLVVNYRGSLGFGEEALQSLPGNIGS 661
Query: 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709
QDVNDVLTA+D VI GL + SKV VVGGSHGGFLTTHLIGQAP FVAAAARNP+CNL+
Sbjct: 662 QDVNDVLTALDFVIKKGLIDASKVAVVGGSHGGFLTTHLIGQAPGTFVAAAARNPVCNLS 721
Query: 710 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 769
LMVGTTDIP+WC+VE YG +GK+ F+E PS +DL +FH KSPISHISKV TPT+FLLGAQ
Sbjct: 722 LMVGTTDIPEWCFVEIYGKEGKNCFSEYPSFDDLCQFHQKSPISHISKVSTPTLFLLGAQ 781
Query: 770 DLRVPVSNGLQ 780
DLRVPVSNGLQ
Sbjct: 782 DLRVPVSNGLQ 792
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 789 | ||||||
| TAIR|locus:2129920 | 764 | AARE "acylamino acid-releasing | 0.906 | 0.935 | 0.625 | 6.4e-250 | |
| MGI|MGI:88041 | 732 | Apeh "acylpeptide hydrolase" [ | 0.437 | 0.471 | 0.350 | 1.5e-81 | |
| UNIPROTKB|P80227 | 730 | APEH "Acylamino-acid-releasing | 0.482 | 0.521 | 0.336 | 1.7e-80 | |
| UNIPROTKB|E2R7E8 | 734 | APEH "Uncharacterized protein" | 0.433 | 0.465 | 0.343 | 1.4e-79 | |
| RGD|2125 | 732 | Apeh "N-acylaminoacyl-peptide | 0.433 | 0.467 | 0.343 | 6e-79 | |
| UNIPROTKB|P13676 | 732 | Apeh "Acylamino-acid-releasing | 0.433 | 0.467 | 0.343 | 6e-79 | |
| UNIPROTKB|I3LFX8 | 702 | I3LFX8 "Uncharacterized protei | 0.433 | 0.487 | 0.332 | 7.6e-78 | |
| ZFIN|ZDB-GENE-030131-9870 | 730 | apeh "acylpeptide hydrolase" [ | 0.429 | 0.464 | 0.365 | 1.9e-76 | |
| UNIPROTKB|I3LEU6 | 725 | I3LEU6 "Uncharacterized protei | 0.482 | 0.525 | 0.327 | 2.3e-76 | |
| UNIPROTKB|F1SPS7 | 732 | APEH "Acylamino-acid-releasing | 0.433 | 0.467 | 0.332 | 4.3e-75 |
| TAIR|locus:2129920 AARE "acylamino acid-releasing enzyme" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2407 (852.4 bits), Expect = 6.4e-250, P = 6.4e-250
Identities = 457/731 (62%), Positives = 555/731 (75%)
Query: 56 MDASKAAPAKQVSSVLDATAEEEYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSI 115
MD+S AK++ LD T EEEYA+ SKLLQ+F NI SIDKAW FNS +G+ QAMF++
Sbjct: 1 MDSSGTDSAKELHVGLDPTTEEEYATQSKLLQEFINIPSIDKAWIFNSDSGS--QAMFAL 58
Query: 116 SQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE 175
SQ NLLANK+KKFMLS IS E+ SV F WAPFP+EMTGASA VPSPSG KLLV+RNPE
Sbjct: 59 SQANLLANKKKKFMLSGHISNESNQSVNFHWAPFPIEMTGASAFVPSPSGLKLLVIRNPE 118
Query: 176 NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235
NESP +FE+W+ SQLEKEFH+PQ VHGSVY DGWFEGISW+SDET +AYVAEEPS KPT
Sbjct: 119 NESPTKFEIWNSSQLEKEFHIPQKVHGSVYVDGWFEGISWDSDETHVAYVAEEPSRPKPT 178
Query: 236 FS-LGSTKGGSS-DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK 293
F LG K +S DK SWKG+GDWEE+WGE YAGKRQP+LFVIN++SGEV+ +KGIP+
Sbjct: 179 FDHLGYYKKENSLDKGIGSWKGEGDWEEEWGEAYAGKRQPALFVINVDSGEVEPIKGIPR 238
Query: 294 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYXXXXXXXX 353
S+SVGQVVW+P + G QYLVF GW + RK GIKYCYNRPCA+YA++ +
Sbjct: 239 SISVGQVVWSPNSNGSAQYLVFAGWLGDKRKFGIKYCYNRPCAIYAIKFT-------SDE 291
Query: 354 XXXXXXXDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413
+ P+ NLT+SISS F PRFS DGKFLVF+SAK++VDSGAH AT+SLHRIDWP+
Sbjct: 292 PKDDDANEFPIHNLTKSISSGFCPRFSKDGKFLVFVSAKTAVDSGAHWATESLHRIDWPS 351
Query: 414 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXX 473
+G IVDVI VV C + CFPGLY + +LS+PWLSDG +++LS+ W
Sbjct: 352 DGKLPESTNIVDVIQVVNCPKDGCFPGLYVTGLLSDPWLSDGHSLMLSTYWRSCRVILSV 411
Query: 474 XXXXGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF-VDKANKGTWSWL 532
GE+ R +P++S++SW+ L LDGD+I+AVSSSPV VP++KYG +D A K +W W
Sbjct: 412 NLLSGEVSRASPSDSDYSWNALALDGDSIVAVSSSPVSVPEIKYGKKGLDSAGKPSWLWS 471
Query: 533 NVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCS-C 591
N+ SPI R EKV + LSS QF I+K+P+ VS L +GA+ P EAI+VSSS K+ C
Sbjct: 472 NIQSPI-RYSEKVMAGLSSLQFKILKVPISDVSEGLAEGAKNPIEAIYVSSSKSKENGKC 530
Query: 592 DPLIVVLHGGPHXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
DPLI VLHGGPH +GYS LI+NYRGSLG+GE+ALQSLPGKVGSQD
Sbjct: 531 DPLIAVLHGGPHSVSPCSFSRTMAYLSSIGYSQLIINYRGSLGYGEDALQSLPGKVGSQD 590
Query: 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
V D L A+DH I+MG+A+PS++TV+GGSHGGFLTTHLIGQAPDKFVAAAARNP+CN+A M
Sbjct: 591 VKDCLLAVDHAIEMGIADPSRITVLGGSHGGFLTTHLIGQAPDKFVAAAARNPVCNMASM 650
Query: 712 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 771
VG TDIPDWC+ E+YG + +TE+PS EDL+RFH SPISHISKVKTPT+FLLG +DL
Sbjct: 651 VGITDIPDWCFFEAYGDQSH--YTEAPSAEDLSRFHQMSPISHISKVKTPTLFLLGTKDL 708
Query: 772 RVPVSNGLQVI 782
RVP+SNG Q +
Sbjct: 709 RVPISNGFQYV 719
|
|
| MGI|MGI:88041 Apeh "acylpeptide hydrolase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 551 (199.0 bits), Expect = 1.5e-81, Sum P(2) = 1.5e-81
Identities = 127/362 (35%), Positives = 192/362 (53%)
Query: 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 482
+VD++P Q G+ F G+Y S + W +D ++ S+ G +
Sbjct: 344 VVDIVPR-QL--GESFSGIYCSLLPLGCWSADSQRVVFDSVQRSRQDLFAVDTQTGSVTS 400
Query: 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 542
+T S SW LLT+D D ++A S+P P +K G+ + + SW+++
Sbjct: 401 LTAGGSAGSWKLLTIDRDLMVAQFSTPNLPPSLKVGFLPPAGKEQSVSWVSLEEA----- 455
Query: 543 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 602
E + + + I + N+ + A FEAI + S+ D S P++V+ HGGP
Sbjct: 456 EPIPDI----HWGIRVLHPPPDQENV-QYADLDFEAILLQPSNSPDKSQVPMVVMPHGGP 510
Query: 603 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 662
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A+ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVQQV 570
Query: 663 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 722
+ + +V ++GGSHGGFL+ HLIGQ P+ + A ARNP+ N+ M+GTTDIPDWC
Sbjct: 571 LQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSACIARNPVINIVSMMGTTDIPDWCM 630
Query: 723 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVI 782
VE+ G + + P + L KSPI +I +VKTP + +LG +D RVP GL+
Sbjct: 631 VET-GFPYSNDYL--PDLNVLEEMLDKSPIKYIPQVKTPVLLMLGQEDRRVPFKQGLEY- 686
Query: 783 YH 784
YH
Sbjct: 687 YH 688
|
|
| UNIPROTKB|P80227 APEH "Acylamino-acid-releasing enzyme" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 544 (196.6 bits), Expect = 1.7e-80, Sum P(2) = 1.7e-80
Identities = 136/404 (33%), Positives = 204/404 (50%)
Query: 377 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD 436
PR SPD +V+L S V H L DW T +VDV+P Q E
Sbjct: 303 PRLSPDQCRIVYLQFPSLVP---HQQCGQLCLYDWYTRVTVV----VVDVVPR-QLGEN- 353
Query: 437 CFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLRITPAESNFSWSLLT 496
F G+Y S + W +D ++ + G + +T S SW LLT
Sbjct: 354 -FSGIYCSLLPLGCWSADSQRVVFDTAQRSRQDLFAVDTQMGTVTPLTAGGSGGSWKLLT 412
Query: 497 LDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSI 556
+D D ++A S+P P +K G+ + W+++ E + + S +
Sbjct: 413 IDRDLMVAQFSTPNLPPCLKVGFLPPAGMEQEVVWVSLEEA-----EPIPDI--SWSIRV 465
Query: 557 MKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHXXXXXXXXXXXXX 616
++ P + A G FEAI + S+ D + P++V+ HGGPH
Sbjct: 466 LQPPPEQEHAQYV-GLD--FEAILIQPSNPPDKTQVPMVVMPHGGPHSSFVTSWMLLPAM 522
Query: 617 XXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVV 676
+G++ L+VNYRGS GFG++++ SLPG VGSQDV DV A++ V+ + +V ++
Sbjct: 523 LCKMGFAALLVNYRGSTGFGQDSILSLPGNVGSQDVKDVQFAVEQVLQEEHFDAGRVALL 582
Query: 677 GGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTE 736
GGSHGGFL+ HLIGQ P+ + A RNP+ N+A M+G+TDIPDWC VE+ D +
Sbjct: 583 GGSHGGFLSCHLIGQYPETYGACVVRNPVINIASMMGSTDIPDWCVVEAGYLYSSDCLPD 642
Query: 737 SPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780
P+V + +KSPI + +VKTP + +LG +D RVP G++
Sbjct: 643 -PNV--WSEMLNKSPIKYTPQVKTPVLLMLGQEDRRVPFKQGME 683
|
|
| UNIPROTKB|E2R7E8 APEH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 1.4e-79, Sum P(2) = 1.4e-79
Identities = 123/358 (34%), Positives = 187/358 (52%)
Query: 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 482
+VDV+P Q E F G+Y S + W +D ++ S G +
Sbjct: 346 VVDVVPR-QLGEN--FSGIYCSLLPLGCWSADSQRVVFDSAQRSRQDLFVVDTQMGSVTS 402
Query: 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 542
+T S SW LLT+D D ++A S+P P +K G+ + T W+++
Sbjct: 403 LTAGGSGGSWKLLTIDRDLMVAQFSTPSLPPSLKVGFLPPAGKEQTVLWVSLEEA----- 457
Query: 543 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 602
E + + S +++ P + + A FEAI + S+ D + P++V+ HGGP
Sbjct: 458 EPISDI--SWAIRVLQPPPEQENVQF---AGLDFEAILLQPSNPPDKTQVPMVVMPHGGP 512
Query: 603 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 662
H +G+++L+VNYRGS GFG++++ SLPGKVG QDV DV A++ V
Sbjct: 513 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGKVGHQDVKDVQFAVEQV 572
Query: 663 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 722
+ + +V ++GGSHGGFL+ HLIGQ P+ + A ARNP+ N+A M+G+TDIPDWC
Sbjct: 573 LQEEHFDADRVALMGGSHGGFLSCHLIGQYPETYRACVARNPVINIASMMGSTDIPDWCV 632
Query: 723 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780
VE+ D P + KSPI + +VKTP + +LG +D RVP G++
Sbjct: 633 VEAGFPYSSDCL---PDLSVWAEMLDKSPIKYTPQVKTPLLLMLGQEDRRVPFKQGME 687
|
|
| RGD|2125 Apeh "N-acylaminoacyl-peptide hydrolase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 536 (193.7 bits), Expect = 6.0e-79, Sum P(2) = 6.0e-79
Identities = 123/358 (34%), Positives = 191/358 (53%)
Query: 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 482
+VD++P Q G+ F G+Y S + W +D ++ S G +
Sbjct: 344 VVDIVPR-QL--GESFSGIYCSLLPLGCWSADSQRVVFDSAQRSRQDLFAVDTQTGSITS 400
Query: 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 542
+T A S SW LLT+D D ++A S+P P +K G+ + + SW+++
Sbjct: 401 LTAAGSAGSWKLLTIDKDLMVAQFSTPSLPPSLKVGFLPPPGKEQSVSWVSLEEA----- 455
Query: 543 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 602
E + + + + + N+ + A FEAI + S+ D + P++V+ HGGP
Sbjct: 456 EPIPGI----HWGVRVLHPPPDQENV-QYADLDFEAILLQPSNPPDKTQVPMVVMPHGGP 510
Query: 603 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 662
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 570
Query: 663 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 722
+ + +V ++GGSHGGFL+ HLIGQ P+ + A ARNP+ N+A M+G+TDIPDWC
Sbjct: 571 LQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSACIARNPVINIASMMGSTDIPDWCM 630
Query: 723 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780
VE+ G +S P + KSPI +I +VKTP + +LG +D RVP G++
Sbjct: 631 VET-GFPYSNSCL--PDLNVWEEMLDKSPIKYIPQVKTPVLLMLGQEDRRVPFKQGME 685
|
|
| UNIPROTKB|P13676 Apeh "Acylamino-acid-releasing enzyme" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 536 (193.7 bits), Expect = 6.0e-79, Sum P(2) = 6.0e-79
Identities = 123/358 (34%), Positives = 191/358 (53%)
Query: 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 482
+VD++P Q G+ F G+Y S + W +D ++ S G +
Sbjct: 344 VVDIVPR-QL--GESFSGIYCSLLPLGCWSADSQRVVFDSAQRSRQDLFAVDTQTGSITS 400
Query: 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 542
+T A S SW LLT+D D ++A S+P P +K G+ + + SW+++
Sbjct: 401 LTAAGSAGSWKLLTIDKDLMVAQFSTPSLPPSLKVGFLPPPGKEQSVSWVSLEEA----- 455
Query: 543 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 602
E + + + + + N+ + A FEAI + S+ D + P++V+ HGGP
Sbjct: 456 EPIPGI----HWGVRVLHPPPDQENV-QYADLDFEAILLQPSNPPDKTQVPMVVMPHGGP 510
Query: 603 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 662
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 570
Query: 663 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 722
+ + +V ++GGSHGGFL+ HLIGQ P+ + A ARNP+ N+A M+G+TDIPDWC
Sbjct: 571 LQEEHFDARRVALMGGSHGGFLSCHLIGQYPETYSACIARNPVINIASMMGSTDIPDWCM 630
Query: 723 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780
VE+ G +S P + KSPI +I +VKTP + +LG +D RVP G++
Sbjct: 631 VET-GFPYSNSCL--PDLNVWEEMLDKSPIKYIPQVKTPVLLMLGQEDRRVPFKQGME 685
|
|
| UNIPROTKB|I3LFX8 I3LFX8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 518 (187.4 bits), Expect = 7.6e-78, Sum P(2) = 7.6e-78
Identities = 119/358 (33%), Positives = 184/358 (51%)
Query: 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 482
+VD++P Q G+ F G+Y S + W +D ++ S G +
Sbjct: 314 VVDIVPR-QL--GEDFSGIYCSLLPLGCWSADSQRVVFDSPQRSRQDLFAVDTQMGSVTS 370
Query: 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 542
+T S SW LLT+D D ++ S+P P +K G+ + SW+++
Sbjct: 371 LTAGGSGGSWKLLTIDRDLMVLQFSTPSVPPSLKVGFLPPAGKEQAVSWVSLEEA----- 425
Query: 543 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 602
E + S +++ P + A FEAI + S+ + + P++V+ HGGP
Sbjct: 426 EPFPDI--SWSIRVLQPPPQQEHVQY---AGLDFEAILLQPSNSPEKTQVPMVVMPHGGP 480
Query: 603 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 662
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 481 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 540
Query: 663 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 722
+ + +V ++GGSHGGFL+ HLIGQ P+ + A RNP+ N+A M+G+TDIPDWC
Sbjct: 541 LQEEHFDAGRVALMGGSHGGFLSCHLIGQYPETYSACVVRNPVINIASMMGSTDIPDWCM 600
Query: 723 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780
VE+ S D P + KSPI + +VKTP + +LG +D RVP G++
Sbjct: 601 VEAGFSYSSDCL---PDLSVWAAMLDKSPIKYAPQVKTPLLLMLGQEDRRVPFKQGME 655
|
|
| ZFIN|ZDB-GENE-030131-9870 apeh "acylpeptide hydrolase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 532 (192.3 bits), Expect = 1.9e-76, Sum P(2) = 1.9e-76
Identities = 131/358 (36%), Positives = 184/358 (51%)
Query: 426 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLRITP 485
V+ VVQ A D G+YS + W +D +L S E+ +T
Sbjct: 342 VVDVVQRAGDDGSTGIYSFLLSPRCWSADSERVLFCSAQRSRKNLFVVDTSSREVTCLTS 401
Query: 486 AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKV 545
SW+LL + D ++ SSP P ++ G+ K ++ SW+ + +
Sbjct: 402 QSQEGSWNLLNIHRDLMVVSCSSPNSPPDLRVGFLPGKGSESKISWVTLEE------SQP 455
Query: 546 KSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCD---PLIVVLHGGP 602
+S +S + + P + N T+ F+A+ + KD D PLIV+ HGGP
Sbjct: 456 QSDISWQTLNFSPPPEQD---N-TQYPGLDFDALLLKP---KDTPADGKLPLIVMPHGGP 508
Query: 603 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 662
H +G+S+L+VNYRGSLGFG++ + SLPG G+QDV DV A+D V
Sbjct: 509 HSVLVSEWILSTAVLCKMGFSVLLVNYRGSLGFGQDNVFSLPGNCGTQDVKDVQFAVDSV 568
Query: 663 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 722
+ G + KV V+GGSHGGFL HLIGQ P + A ARNP+ NLA MV TDIPDWC
Sbjct: 569 LKQGGFDEQKVAVIGGSHGGFLACHLIGQYPGFYKACVARNPVTNLASMVCCTDIPDWCI 628
Query: 723 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780
VE+ G K P++ L + KSPI H++KVKTP + +LG D RVP G++
Sbjct: 629 VEA-GFDYKPDIQLEPAI--LEQMLIKSPIKHVAKVKTPVLLMLGEGDKRVPNKQGIE 683
|
|
| UNIPROTKB|I3LEU6 I3LEU6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 525 (189.9 bits), Expect = 2.3e-76, Sum P(2) = 2.3e-76
Identities = 135/412 (32%), Positives = 205/412 (49%)
Query: 377 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD 436
PR SPD +V+L S V H L DW T +S+ +VD++P Q G+
Sbjct: 290 PRLSPDQCRIVYLRFPSLVP---HQQCGQLCLYDWYTR--VTSV--VVDIVPR-QL--GE 339
Query: 437 CFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLRIT------PAE--S 488
F G+Y S + W +D ++ S G + +T P + S
Sbjct: 340 DFSGIYCSLLPLGCWSADSQRVVFDSPQRSRQDLFAVDTQMGSVTSLTAGLMVLPLKWGS 399
Query: 489 NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSL 548
SW LLT+D D ++ S+P P +K G+ + SW+++ E +
Sbjct: 400 GGSWKLLTIDRDLMVLQFSTPSVPPSLKVGFLPPAGKEQAVSWVSLEEA-----EPFPDI 454
Query: 549 LSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHXXXXX 608
S +++ P + A FEAI + S+ + + P++V+ HGGPH
Sbjct: 455 --SWSIRVLQPPPQQEHVQY---AGLDFEAILLQPSNSPEKTQVPMVVMPHGGPHSSFVT 509
Query: 609 XXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668
+G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V+
Sbjct: 510 AWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQVLQEEHF 569
Query: 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728
+ +V ++GGSHGGFL+ HLIGQ P+ + A RNP+ N+A M+G+TDIPDWC VE+ S
Sbjct: 570 DAGRVALMGGSHGGFLSCHLIGQYPETYSACVVRNPVINIASMMGSTDIPDWCMVEAGFS 629
Query: 729 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780
D P + KSPI + +VKTP + +LG +D RVP G++
Sbjct: 630 YSSDCL---PDLSVWAAMLDKSPIKYAPQVKTPLLLMLGQEDRRVPFKQGME 678
|
|
| UNIPROTKB|F1SPS7 APEH "Acylamino-acid-releasing enzyme" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 519 (187.8 bits), Expect = 4.3e-75, Sum P(2) = 4.3e-75
Identities = 119/358 (33%), Positives = 184/358 (51%)
Query: 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGXXXXXXXXXXXXGELLR 482
+VD++P Q G+ F G+Y S + W +D ++ S G +
Sbjct: 344 VVDIVPR-QL--GEDFSGIYCSLLPLGCWSADSQRVVFDSPQRSRQDLFAVDTQMGSVTS 400
Query: 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCP 542
+T S SW LLT+D D ++ S+P P +K G+ + SW+++
Sbjct: 401 LTAGGSGGSWKLLTIDRDLMVVQFSTPSVPPSLKVGFLPPAGKEQAVSWVSLEEA----- 455
Query: 543 EKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 602
E + S +++ P + A FEAI + S+ + + P++V+ HGGP
Sbjct: 456 EPFPDI--SWSIRVLQPPPQQEHVQY---AGLDFEAILLQPSNSPEKTQVPMVVMPHGGP 510
Query: 603 HXXXXXXXXXXXXXXXXVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHV 662
H +G+++L+VNYRGS GFG++++ SLPG VG QDV DV A++ V
Sbjct: 511 HSSFVTAWMLFPAMLCKMGFAVLLVNYRGSTGFGQDSILSLPGNVGHQDVKDVQFAVEQV 570
Query: 663 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY 722
+ + +V ++GGSHGGFL+ HLIGQ P+ + A RNP+ N+A M+G+TDIPDWC
Sbjct: 571 LQEEHFDAGRVALMGGSHGGFLSCHLIGQYPETYSACVVRNPVINIASMMGSTDIPDWCM 630
Query: 723 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780
VE+ S D P + KSPI + +VKTP + +LG +D RVP G++
Sbjct: 631 VEAGFSYSSDCL---PDLSVWAAMLDKSPIKYAPQVKTPLLLMLGQEDRRVPFKQGME 685
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 789 | |||
| COG1506 | 620 | COG1506, DAP2, Dipeptidyl aminopeptidases/acylamin | 2e-33 | |
| pfam00326 | 212 | pfam00326, Peptidase_S9, Prolyl oligopeptidase fam | 6e-23 | |
| pfam12697 | 187 | pfam12697, Abhydrolase_6, Alpha/beta hydrolase fam | 1e-08 | |
| COG1505 | 648 | COG1505, COG1505, Serine proteases of the peptidas | 4e-07 | |
| pfam12695 | 145 | pfam12695, Abhydrolase_5, Alpha/beta hydrolase fam | 4e-07 | |
| COG0596 | 282 | COG0596, MhpC, Predicted hydrolases or acyltransfe | 2e-04 | |
| PRK10115 | 686 | PRK10115, PRK10115, protease 2; Provisional | 4e-04 |
| >gnl|CDD|224423 COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 2e-33
Identities = 98/422 (23%), Positives = 160/422 (37%), Gaps = 52/422 (12%)
Query: 360 EDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 419
+ + +LT S F DGK + L +S L +G+ SS
Sbjct: 204 GNGELESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSS 263
Query: 420 LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479
+ V +GD GL + GSS + V
Sbjct: 264 GDDTRGAWAVEGGLDGD---GLLFIAT---------------DGGGSSPLF---RVDDLG 302
Query: 480 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPIS 539
+ + +DG + SSP P Y Y + K ++S +
Sbjct: 303 GGVEGLSGDDGGVPGFDVDGRKLALAYSSP-TEPPEIYLYDRGEEAK-------LTSSNN 354
Query: 540 RCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLH 599
+KVK L + + + L K KK PLIV +H
Sbjct: 355 SGLKKVK-LAEPEPVTYKSNDGETIHGWLYKPPGFDPR--------KKY----PLIVYIH 401
Query: 600 GGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI 659
GGP + S++ + L+S GY++L NYRGS G+G E ++ G G D+ D++ A+
Sbjct: 402 GGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAV 461
Query: 660 DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD 719
D ++ + L +P ++ + GGS+GG++T + P F AA A + L G +
Sbjct: 462 DALVKLPLVDPERIGITGGSYGGYMTLLAATKTPR-FKAAVAVAGGVDWLLYFGESTEGL 520
Query: 720 WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGL 779
E G + D ++ +SPI + +KTP + + G +D RVP+
Sbjct: 521 RFDPEENGGGPPE---------DREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAE 571
Query: 780 QV 781
Q+
Sbjct: 572 QL 573
|
Length = 620 |
| >gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 6e-23
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 13/176 (7%)
Query: 609 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668
S+S +L L+ GY + + N RGS G+G + G +G + +D + A +++I G
Sbjct: 2 SFSWNLQLLADRGYVVAVANGRGSGGYGRAWHDAGKGDLGQNEFDDFIAAAEYLIAQGYV 61
Query: 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728
+P ++ + GGS+GG+LT + Q PD F AA A P+ + + + E Y
Sbjct: 62 DPDRLAIWGGSYGGYLTGAALNQRPDLFKAAVAVVPVVD---WLTYMSDTSP-FTERYME 117
Query: 729 KGKDSFTESPSVEDLTRFHSKSPISHISKVK--TPTIFLLGAQDLRVPVSNGLQVI 782
G ++ + SP S VK P + + G D RVP + L+++
Sbjct: 118 WG-------NPWDNEEGYRYLSPYSPYDNVKAYPPLLLIHGLHDDRVPPAEALKLV 166
|
Length = 212 |
| >gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-08
Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 30/182 (16%)
Query: 595 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 654
+V+LHG S S+ L++ GY +L + G G+ D D
Sbjct: 1 VVLLHGAGGSAE--SWRPLAEALAA-GYRVLAPDLPG---HGDSDGPPRTPYSLEDDAAD 54
Query: 655 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 714
+ +D + V +VG S GG + + P++ L L+
Sbjct: 55 LAALLDAL------GLGPVVLVGHSLGGAVALAAAARRPERVAG---------LVLISPP 99
Query: 715 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVP 774
+ + + + + DL ++++ P + + G D VP
Sbjct: 100 LRDLEE-LLAADAAALLALLRAALLDADLRE--------ALARLTVPVLVIHGEDDPLVP 150
Query: 775 VS 776
Sbjct: 151 PE 152
|
This family contains alpha/beta hydrolase enzymes of diverse specificity. Length = 187 |
| >gnl|CDD|224422 COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 4e-07
Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 16/192 (8%)
Query: 587 KDCSCDPLIVVLHG-GPHSVSLS-SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 644
K D +L+ G ++SL+ +S S G ++ N RG FG E Q+
Sbjct: 414 KGAKKDENPTLLYAYGGFNISLTPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGM 473
Query: 645 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 704
+ +D + + +I G+ +P K+ + GGS+GG L + Q P+ F AA P
Sbjct: 474 KENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVP 533
Query: 705 LCNLALMVGTTDIP-DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKT--P 761
L + M+ + ++ YG+ + P ED + SP ++ + P
Sbjct: 534 LLD---MLRYHLLTAGSSWIAEYGN------PDDP--EDRAFLLAYSPYHNLKPGQKYPP 582
Query: 762 TIFLLGAQDLRV 773
T+ D RV
Sbjct: 583 TLITTSLHDDRV 594
|
Length = 648 |
| >gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-07
Identities = 32/193 (16%), Positives = 58/193 (30%), Gaps = 62/193 (32%)
Query: 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653
L+V+LHG +Y+ L+S GY+++ V+Y G S
Sbjct: 1 LVVLLHGA--GGDPEAYAPLARALASRGYNVVAVDYPGHGA--------------SLGAP 44
Query: 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 713
D + V+ +P ++ +VG S GG + L + P A
Sbjct: 45 DA----EAVLADAPLDPERIVLVGHSLGGGVALLLAARDPRVKAAVVLAAG--------- 91
Query: 714 TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRV 773
+ ++K+ P + + G +D V
Sbjct: 92 ---------------------------------DPPDALDDLAKLTVPVLIIHGTRDGVV 118
Query: 774 PVSNGLQVIYHIP 786
P + +P
Sbjct: 119 PPEEAEALAAALP 131
|
This family contains a diverse range of alpha/beta hydrolase enzymes. Length = 145 |
| >gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.8 bits (102), Expect = 2e-04
Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 12/129 (9%)
Query: 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
P +V+LHG P S S+ + + Y ++ + RG G G S
Sbjct: 21 GPPLVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDLRG---HG---RSDPAGYSLSAY 74
Query: 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
+D+ +D + KV +VG S GG + L + PD+ P L+
Sbjct: 75 ADDLAALLDAL------GLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPPPGLL 128
Query: 712 VGTTDIPDW 720
P
Sbjct: 129 EAALRQPAG 137
|
Length = 282 |
| >gnl|CDD|182247 PRK10115, PRK10115, protease 2; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 4/129 (3%)
Query: 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
+PL+V +G + + +S S L G+ IV+ RG G++ + GK +
Sbjct: 445 NPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYED--GKFLKKK 502
Query: 652 --VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709
ND L A D ++ +G +PS +GGS GG L I Q P+ F A+ P ++
Sbjct: 503 NTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVV 562
Query: 710 LMVGTTDIP 718
+ IP
Sbjct: 563 TTMLDESIP 571
|
Length = 686 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 789 | |||
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 100.0 | |
| PRK10115 | 686 | protease 2; Provisional | 100.0 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 100.0 | |
| KOG2281 | 867 | consensus Dipeptidyl aminopeptidases/acylaminoacyl | 100.0 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.96 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 99.95 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.95 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.94 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.93 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.93 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.93 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.93 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.92 | |
| KOG2237 | 712 | consensus Predicted serine protease [Posttranslati | 99.92 | |
| COG1505 | 648 | Serine proteases of the peptidase family S9A [Amin | 99.92 | |
| PF00326 | 213 | Peptidase_S9: Prolyl oligopeptidase family This fa | 99.91 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.9 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.9 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.89 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.88 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.88 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.87 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.86 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.86 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.86 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.84 | |
| PRK13604 | 307 | luxD acyl transferase; Provisional | 99.83 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.82 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.81 | |
| PRK05077 | 414 | frsA fermentation/respiration switch protein; Revi | 99.78 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 99.77 | |
| PLN02298 | 330 | hydrolase, alpha/beta fold family protein | 99.75 | |
| PRK10566 | 249 | esterase; Provisional | 99.75 | |
| TIGR01840 | 212 | esterase_phb esterase, PHB depolymerase family. Th | 99.73 | |
| PHA02857 | 276 | monoglyceride lipase; Provisional | 99.72 | |
| PLN02385 | 349 | hydrolase; alpha/beta fold family protein | 99.72 | |
| PF05448 | 320 | AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR0 | 99.71 | |
| COG3458 | 321 | Acetyl esterase (deacetylase) [Secondary metabolit | 99.71 | |
| KOG1552 | 258 | consensus Predicted alpha/beta hydrolase [General | 99.7 | |
| PLN02442 | 283 | S-formylglutathione hydrolase | 99.69 | |
| KOG1455 | 313 | consensus Lysophospholipase [Lipid transport and m | 99.69 | |
| PF06500 | 411 | DUF1100: Alpha/beta hydrolase of unknown function | 99.62 | |
| PLN02652 | 395 | hydrolase; alpha/beta fold family protein | 99.62 | |
| PRK10749 | 330 | lysophospholipase L2; Provisional | 99.62 | |
| KOG4391 | 300 | consensus Predicted alpha/beta hydrolase BEM46 [Ge | 99.61 | |
| TIGR02821 | 275 | fghA_ester_D S-formylglutathione hydrolase. This m | 99.6 | |
| PRK10985 | 324 | putative hydrolase; Provisional | 99.59 | |
| PF02129 | 272 | Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 fam | 99.59 | |
| COG1647 | 243 | Esterase/lipase [General function prediction only] | 99.58 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.58 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.57 | |
| PLN02511 | 388 | hydrolase | 99.57 | |
| PF10503 | 220 | Esterase_phd: Esterase PHB depolymerase | 99.56 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 99.55 | |
| PRK00870 | 302 | haloalkane dehalogenase; Provisional | 99.54 | |
| COG2267 | 298 | PldB Lysophospholipase [Lipid metabolism] | 99.54 | |
| TIGR00976 | 550 | /NonD putative hydrolase, CocE/NonD family. This m | 99.53 | |
| TIGR03343 | 282 | biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-die | 99.52 | |
| COG0412 | 236 | Dienelactone hydrolase and related enzymes [Second | 99.52 | |
| TIGR03611 | 257 | RutD pyrimidine utilization protein D. This protei | 99.51 | |
| TIGR02240 | 276 | PHA_depoly_arom poly(3-hydroxyalkanoate) depolymer | 99.5 | |
| PRK05371 | 767 | x-prolyl-dipeptidyl aminopeptidase; Provisional | 99.5 | |
| PF12695 | 145 | Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3 | 99.5 | |
| PF01738 | 218 | DLH: Dienelactone hydrolase family; InterPro: IPR0 | 99.49 | |
| COG0429 | 345 | Predicted hydrolase of the alpha/beta-hydrolase fo | 99.48 | |
| PLN02965 | 255 | Probable pheophorbidase | 99.48 | |
| TIGR02427 | 251 | protocat_pcaD 3-oxoadipate enol-lactonase. Members | 99.47 | |
| PLN02824 | 294 | hydrolase, alpha/beta fold family protein | 99.46 | |
| COG4099 | 387 | Predicted peptidase [General function prediction o | 99.45 | |
| TIGR03056 | 278 | bchO_mg_che_rel putative magnesium chelatase acces | 99.45 | |
| PLN03087 | 481 | BODYGUARD 1 domain containing hydrolase; Provision | 99.44 | |
| PF12697 | 228 | Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3 | 99.44 | |
| PRK10673 | 255 | acyl-CoA esterase; Provisional | 99.43 | |
| PRK11460 | 232 | putative hydrolase; Provisional | 99.43 | |
| PRK10162 | 318 | acetyl esterase; Provisional | 99.42 | |
| TIGR01250 | 288 | pro_imino_pep_2 proline-specific peptidases, Bacil | 99.41 | |
| TIGR01607 | 332 | PST-A Plasmodium subtelomeric family (PST-A). Thes | 99.41 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.41 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.4 | |
| PRK11071 | 190 | esterase YqiA; Provisional | 99.4 | |
| TIGR03101 | 266 | hydr2_PEP hydrolase, ortholog 2, exosortase system | 99.4 | |
| PF12715 | 390 | Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8 | 99.4 | |
| PRK03592 | 295 | haloalkane dehalogenase; Provisional | 99.4 | |
| PLN00021 | 313 | chlorophyllase | 99.39 | |
| PLN02211 | 273 | methyl indole-3-acetate methyltransferase | 99.38 | |
| PRK10349 | 256 | carboxylesterase BioH; Provisional | 99.38 | |
| KOG4178 | 322 | consensus Soluble epoxide hydrolase [Lipid transpo | 99.37 | |
| TIGR01392 | 351 | homoserO_Ac_trn homoserine O-acetyltransferase. Th | 99.37 | |
| TIGR03695 | 251 | menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene | 99.37 | |
| KOG1838 | 409 | consensus Alpha/beta hydrolase [General function p | 99.36 | |
| TIGR01249 | 306 | pro_imino_pep_1 proline iminopeptidase, Neisseria- | 99.36 | |
| TIGR01738 | 245 | bioH putative pimeloyl-BioC--CoA transferase BioH. | 99.36 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.35 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.35 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.34 | |
| PLN02872 | 395 | triacylglycerol lipase | 99.33 | |
| PLN02679 | 360 | hydrolase, alpha/beta fold family protein | 99.33 | |
| COG0657 | 312 | Aes Esterase/lipase [Lipid metabolism] | 99.32 | |
| PLN02578 | 354 | hydrolase | 99.32 | |
| PRK07581 | 339 | hypothetical protein; Validated | 99.32 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 99.32 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.31 | |
| PRK03204 | 286 | haloalkane dehalogenase; Provisional | 99.31 | |
| COG2945 | 210 | Predicted hydrolase of the alpha/beta superfamily | 99.31 | |
| PRK06489 | 360 | hypothetical protein; Provisional | 99.3 | |
| PLN02894 | 402 | hydrolase, alpha/beta fold family protein | 99.3 | |
| TIGR01836 | 350 | PHA_synth_III_C poly(R)-hydroxyalkanoic acid synth | 99.3 | |
| TIGR03100 | 274 | hydr1_PEP hydrolase, ortholog 1, exosortase system | 99.29 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 99.29 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.26 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.25 | |
| PRK00175 | 379 | metX homoserine O-acetyltransferase; Provisional | 99.25 | |
| PF07859 | 211 | Abhydrolase_3: alpha/beta hydrolase fold A web pag | 99.25 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.22 | |
| KOG4409 | 365 | consensus Predicted hydrolase/acyltransferase (alp | 99.21 | |
| KOG1515 | 336 | consensus Arylacetamide deacetylase [Defense mecha | 99.2 | |
| PRK11126 | 242 | 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxyl | 99.2 | |
| KOG4667 | 269 | consensus Predicted esterase [Lipid transport and | 99.19 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.17 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.17 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.16 | |
| PLN03084 | 383 | alpha/beta hydrolase fold protein; Provisional | 99.16 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.16 | |
| PF02230 | 216 | Abhydrolase_2: Phospholipase/Carboxylesterase; Int | 99.15 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.14 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.13 | |
| TIGR01838 | 532 | PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, | 99.12 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.12 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.12 | |
| PRK08775 | 343 | homoserine O-acetyltransferase; Provisional | 99.12 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 99.11 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.1 | |
| COG3509 | 312 | LpqC Poly(3-hydroxybutyrate) depolymerase [Seconda | 99.09 | |
| PF12740 | 259 | Chlorophyllase2: Chlorophyllase enzyme; InterPro: | 99.06 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.05 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 99.04 | |
| COG2936 | 563 | Predicted acyl esterases [General function predict | 99.03 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.03 | |
| COG2272 | 491 | PnbA Carboxylesterase type B [Lipid metabolism] | 99.03 | |
| cd00312 | 493 | Esterase_lipase Esterases and lipases (includes fu | 99.02 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.02 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.01 | |
| PLN02980 | 1655 | 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi | 99.01 | |
| COG0400 | 207 | Predicted esterase [General function prediction on | 99.01 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.01 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.0 | |
| KOG1454 | 326 | consensus Predicted hydrolase/acyltransferase (alp | 98.99 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.97 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.96 | |
| PRK06765 | 389 | homoserine O-acetyltransferase; Provisional | 98.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 98.95 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.95 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.95 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 98.91 | |
| PF00135 | 535 | COesterase: Carboxylesterase family The prints ent | 98.9 | |
| PF00561 | 230 | Abhydrolase_1: alpha/beta hydrolase fold A web pag | 98.89 | |
| PF06342 | 297 | DUF1057: Alpha/beta hydrolase of unknown function | 98.89 | |
| PTZ00421 | 493 | coronin; Provisional | 98.88 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.87 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 98.87 | |
| PTZ00421 | 493 | coronin; Provisional | 98.86 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.84 | |
| KOG4627 | 270 | consensus Kynurenine formamidase [Amino acid trans | 98.84 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.84 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 98.84 | |
| KOG3101 | 283 | consensus Esterase D [General function prediction | 98.83 | |
| PF05728 | 187 | UPF0227: Uncharacterised protein family (UPF0227); | 98.81 | |
| PF00756 | 251 | Esterase: Putative esterase; InterPro: IPR000801 T | 98.81 | |
| KOG2624 | 403 | consensus Triglyceride lipase-cholesterol esterase | 98.8 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 98.79 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 98.79 | |
| KOG3043 | 242 | consensus Predicted hydrolase related to dienelact | 98.78 | |
| PF07224 | 307 | Chlorophyllase: Chlorophyllase; InterPro: IPR01082 | 98.77 | |
| PF08538 | 303 | DUF1749: Protein of unknown function (DUF1749); In | 98.76 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 98.75 | |
| PRK07868 | 994 | acyl-CoA synthetase; Validated | 98.75 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.75 | |
| PF03403 | 379 | PAF-AH_p_II: Platelet-activating factor acetylhydr | 98.75 | |
| COG4188 | 365 | Predicted dienelactone hydrolase [General function | 98.74 | |
| KOG2984 | 277 | consensus Predicted hydrolase [General function pr | 98.74 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.73 | |
| PRK10439 | 411 | enterobactin/ferric enterobactin esterase; Provisi | 98.73 | |
| PF08840 | 213 | BAAT_C: BAAT / Acyl-CoA thioester hydrolase C term | 98.73 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 98.73 | |
| PTZ00420 | 568 | coronin; Provisional | 98.73 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.72 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.72 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.71 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.71 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 98.71 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 98.71 | |
| cd00707 | 275 | Pancreat_lipase_like Pancreatic lipase-like enzyme | 98.7 | |
| KOG2564 | 343 | consensus Predicted acetyltransferases and hydrola | 98.68 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.68 | |
| COG4757 | 281 | Predicted alpha/beta hydrolase [General function p | 98.67 | |
| TIGR01839 | 560 | PHA_synth_II poly(R)-hydroxyalkanoic acid synthase | 98.66 | |
| TIGR03230 | 442 | lipo_lipase lipoprotein lipase. Members of this pr | 98.66 | |
| PTZ00420 | 568 | coronin; Provisional | 98.65 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 98.65 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 98.63 | |
| PF03583 | 290 | LIP: Secretory lipase ; InterPro: IPR005152 This e | 98.6 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 98.58 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.57 | |
| COG3571 | 213 | Predicted hydrolase of the alpha/beta-hydrolase fo | 98.57 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.56 | |
| KOG1553 | 517 | consensus Predicted alpha/beta hydrolase BAT5 [Gen | 98.55 | |
| COG2021 | 368 | MET2 Homoserine acetyltransferase [Amino acid tran | 98.54 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.52 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 98.51 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.5 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.49 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 98.49 | |
| PRK10115 | 686 | protease 2; Provisional | 98.48 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 98.47 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 98.46 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.44 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 98.43 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.4 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.39 | |
| COG0596 | 282 | MhpC Predicted hydrolases or acyltransferases (alp | 98.39 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.36 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.36 | |
| PF06821 | 171 | Ser_hydrolase: Serine hydrolase; InterPro: IPR0106 | 98.35 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.35 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 98.35 | |
| PF02273 | 294 | Acyl_transf_2: Acyl transferase; InterPro: IPR0031 | 98.32 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 98.31 | |
| KOG3847 | 399 | consensus Phospholipase A2 (platelet-activating fa | 98.3 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 98.29 | |
| TIGR03502 | 792 | lipase_Pla1_cef extracellular lipase, Pla-1/cef fa | 98.28 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 98.28 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 98.26 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.26 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 98.24 | |
| KOG1516 | 545 | consensus Carboxylesterase and related proteins [G | 98.23 | |
| PF03959 | 212 | FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 | 98.21 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 98.19 | |
| COG2819 | 264 | Predicted hydrolase of the alpha/beta superfamily | 98.18 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 98.18 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.17 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.16 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.16 | |
| PF09752 | 348 | DUF2048: Uncharacterized conserved protein (DUF204 | 98.15 | |
| PF12146 | 79 | Hydrolase_4: Putative lysophospholipase; InterPro: | 98.15 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 98.13 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.13 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 98.12 | |
| PF10340 | 374 | DUF2424: Protein of unknown function (DUF2424); In | 98.11 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 98.09 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.08 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 98.01 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 97.99 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.98 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 97.97 | |
| KOG2112 | 206 | consensus Lysophospholipase [Lipid transport and m | 97.95 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 97.95 | |
| COG3243 | 445 | PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid me | 97.94 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 97.94 | |
| COG3208 | 244 | GrsT Predicted thioesterase involved in non-riboso | 97.93 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 97.92 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.92 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 97.89 | |
| KOG2551 | 230 | consensus Phospholipase/carboxyhydrolase [Amino ac | 97.88 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.88 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.87 | |
| COG0627 | 316 | Predicted esterase [General function prediction on | 97.86 | |
| KOG2382 | 315 | consensus Predicted alpha/beta hydrolase [General | 97.86 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 97.85 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.84 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.83 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.82 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 97.81 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 97.77 | |
| PF05677 | 365 | DUF818: Chlamydia CHLPS protein (DUF818); InterPro | 97.77 | |
| PF11339 | 581 | DUF3141: Protein of unknown function (DUF3141); In | 97.76 | |
| PF05577 | 434 | Peptidase_S28: Serine carboxypeptidase S28; InterP | 97.75 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 97.75 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 97.75 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.71 | |
| PF11144 | 403 | DUF2920: Protein of unknown function (DUF2920); In | 97.71 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 97.7 | |
| COG3545 | 181 | Predicted esterase of the alpha/beta hydrolase fol | 97.69 | |
| PF10230 | 266 | DUF2305: Uncharacterised conserved protein (DUF230 | 97.68 | |
| PF07819 | 225 | PGAP1: PGAP1-like protein; InterPro: IPR012908 The | 97.68 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 97.66 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.66 | |
| PTZ00472 | 462 | serine carboxypeptidase (CBP1); Provisional | 97.66 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 97.65 | |
| TIGR01849 | 406 | PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, | 97.65 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 97.63 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 97.63 | |
| PF00151 | 331 | Lipase: Lipase; InterPro: IPR013818 Triglyceride l | 97.63 | |
| COG2382 | 299 | Fes Enterochelin esterase and related enzymes [Ino | 97.63 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 97.58 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 97.57 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.57 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 97.57 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 97.54 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 97.5 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 97.5 | |
| COG1073 | 299 | Hydrolases of the alpha/beta superfamily [General | 97.49 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 97.48 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.48 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.47 | |
| PF06057 | 192 | VirJ: Bacterial virulence protein (VirJ); InterPro | 97.47 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.44 | |
| PRK04940 | 180 | hypothetical protein; Provisional | 97.44 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 97.44 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 97.42 | |
| PF03096 | 283 | Ndr: Ndr family; InterPro: IPR004142 This family c | 97.4 | |
| PF01674 | 219 | Lipase_2: Lipase (class 2); InterPro: IPR002918 Li | 97.4 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 97.39 | |
| KOG2931 | 326 | consensus Differentiation-related gene 1 protein ( | 97.39 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 97.39 | |
| KOG4840 | 299 | consensus Predicted hydrolases or acyltransferases | 97.38 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 97.37 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 97.37 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 97.36 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 97.35 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 97.35 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 97.33 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 97.32 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.32 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 97.31 | |
| KOG4389 | 601 | consensus Acetylcholinesterase/Butyrylcholinestera | 97.31 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 97.3 | |
| PLN02733 | 440 | phosphatidylcholine-sterol O-acyltransferase | 97.3 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 97.28 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 97.26 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 97.24 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 97.21 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 97.18 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 97.17 | |
| PF06028 | 255 | DUF915: Alpha/beta hydrolase of unknown function ( | 97.16 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 97.14 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 97.14 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 97.12 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 97.12 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 97.1 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 97.08 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.07 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.05 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 97.04 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.01 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 97.01 | |
| KOG2183 | 492 | consensus Prolylcarboxypeptidase (angiotensinase C | 97.0 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 96.98 | |
| PF05990 | 233 | DUF900: Alpha/beta hydrolase of unknown function ( | 96.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 96.94 | |
| PF00975 | 229 | Thioesterase: Thioesterase domain; InterPro: IPR00 | 96.94 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 96.93 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 96.92 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.89 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 96.87 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 96.87 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 96.86 | |
| KOG2565 | 469 | consensus Predicted hydrolases or acyltransferases | 96.85 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 96.83 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.81 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 96.8 | |
| TIGR02171 | 912 | Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou | 96.79 | |
| KOG3967 | 297 | consensus Uncharacterized conserved protein [Funct | 96.77 | |
| PF00450 | 415 | Peptidase_S10: Serine carboxypeptidase; InterPro: | 96.73 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 96.73 | |
| COG4947 | 227 | Uncharacterized protein conserved in bacteria [Fun | 96.71 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 96.66 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 96.66 | |
| COG4814 | 288 | Uncharacterized protein with an alpha/beta hydrola | 96.65 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 96.64 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.63 | |
| COG3150 | 191 | Predicted esterase [General function prediction on | 96.61 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 96.6 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 96.58 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 96.57 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.52 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 96.49 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 96.46 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.44 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 96.43 | |
| PF07082 | 250 | DUF1350: Protein of unknown function (DUF1350); In | 96.41 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.41 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 96.36 | |
| KOG3253 | 784 | consensus Predicted alpha/beta hydrolase [General | 96.35 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 96.34 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 96.33 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 96.32 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 96.29 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 96.24 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 96.22 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 96.17 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 96.17 | |
| PLN03016 | 433 | sinapoylglucose-malate O-sinapoyltransferase | 96.16 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.11 | |
| PLN02209 | 437 | serine carboxypeptidase | 96.09 | |
| PF12048 | 310 | DUF3530: Protein of unknown function (DUF3530); In | 96.09 | |
| COG4782 | 377 | Uncharacterized protein conserved in bacteria [Fun | 96.02 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 95.94 | |
| KOG1282 | 454 | consensus Serine carboxypeptidases (lysosomal cath | 95.9 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 95.9 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 95.84 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 95.83 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 95.76 | |
| KOG2182 | 514 | consensus Hydrolytic enzymes of the alpha/beta hyd | 95.68 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 95.67 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.63 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.61 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.54 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 95.53 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 95.52 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.52 | |
| KOG3724 | 973 | consensus Negative regulator of COPII vesicle form | 95.52 | |
| COG3319 | 257 | Thioesterase domains of type I polyketide synthase | 95.46 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.45 | |
| KOG3975 | 301 | consensus Uncharacterized conserved protein [Funct | 95.43 | |
| PF11187 | 224 | DUF2974: Protein of unknown function (DUF2974); In | 95.34 | |
| PF10142 | 367 | PhoPQ_related: PhoPQ-activated pathogenicity-relat | 95.27 | |
| COG1075 | 336 | LipA Predicted acetyltransferases and hydrolases w | 95.14 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 95.01 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 94.98 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 94.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 94.92 | |
| PF05057 | 217 | DUF676: Putative serine esterase (DUF676); InterPr | 94.9 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 94.87 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 94.77 | |
| PRK10252 | 1296 | entF enterobactin synthase subunit F; Provisional | 94.7 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.58 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 94.52 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 94.47 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 94.41 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 94.29 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 94.26 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 94.18 | |
| PF02450 | 389 | LCAT: Lecithin:cholesterol acyltransferase; InterP | 94.02 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 93.89 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 93.82 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 93.71 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 93.7 | |
| PF05705 | 240 | DUF829: Eukaryotic protein of unknown function (DU | 93.62 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 93.35 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 93.33 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 93.2 | |
| COG2939 | 498 | Carboxypeptidase C (cathepsin A) [Amino acid trans | 93.03 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 92.95 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 92.88 | |
| PLN02633 | 314 | palmitoyl protein thioesterase family protein | 92.77 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 92.72 | |
| KOG2541 | 296 | consensus Palmitoyl protein thioesterase [Lipid tr | 92.7 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.67 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 92.56 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 92.55 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 92.32 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 92.28 | |
| PF07519 | 474 | Tannase: Tannase and feruloyl esterase; InterPro: | 92.25 | |
| PF03283 | 361 | PAE: Pectinacetylesterase | 92.2 | |
| KOG4388 | 880 | consensus Hormone-sensitive lipase HSL [Lipid tran | 92.18 | |
| cd00741 | 153 | Lipase Lipase. Lipases are esterases that can hydr | 92.17 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 92.17 | |
| PF01764 | 140 | Lipase_3: Lipase (class 3); InterPro: IPR002921 Tr | 91.95 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 91.85 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 91.73 | |
| PF02089 | 279 | Palm_thioest: Palmitoyl protein thioesterase; Inte | 91.58 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 91.55 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 91.45 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 91.44 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 91.43 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 91.39 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 91.38 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.28 | |
| smart00824 | 212 | PKS_TE Thioesterase. Peptide synthetases are invol | 91.1 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 91.09 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 90.72 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 90.72 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.67 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 90.65 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 90.64 | |
| PF11288 | 207 | DUF3089: Protein of unknown function (DUF3089); In | 90.62 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 90.45 | |
| PRK13614 | 573 | lipoprotein LpqB; Provisional | 90.38 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 90.35 | |
| PRK13613 | 599 | lipoprotein LpqB; Provisional | 90.32 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 90.27 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 90.27 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 89.82 | |
| cd00519 | 229 | Lipase_3 Lipase (class 3). Lipases are esterases t | 89.62 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 89.26 | |
| PLN02606 | 306 | palmitoyl-protein thioesterase | 89.2 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 89.12 | |
| TIGR03712 | 511 | acc_sec_asp2 accessory Sec system protein Asp2. Th | 89.09 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 88.81 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 88.7 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 88.51 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 87.98 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 87.9 | |
| KOG1283 | 414 | consensus Serine carboxypeptidases [Posttranslatio | 87.83 | |
| PLN02517 | 642 | phosphatidylcholine-sterol O-acyltransferase | 87.79 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 87.72 | |
| KOG2100 | 755 | consensus Dipeptidyl aminopeptidase [Posttranslati | 87.32 |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=427.24 Aligned_cols=559 Identities=21% Similarity=0.280 Sum_probs=386.5
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
..+|+|..++|..+..+...+...+.+|+.+... ...++.. ..+..+.|||||+.++|.++.+....+++
T Consensus 19 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~------~~~~~~~~spdg~~~~~~~~~~~~~~~l~ 88 (620)
T COG1506 19 RVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT----VRLLTFG------GGVSELRWSPDGSVLAFVSTDGGRVAQLY 88 (620)
T ss_pred ccCCCCceeEEeeccccccccccccceEEEeccc----ccccccC------CcccccccCCCCCEEEEEeccCCCcceEE
Confidence 3458899999998877777778888999865321 2223333 46888999999999999985554567788
Q ss_pred EEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCC
Q 003886 183 ELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 262 (789)
Q Consensus 183 ~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 262 (789)
.+..++ ........+ ....|+|+|+.+++......... .+. +......-..|...
T Consensus 89 l~~~~g---~~~~~~~~v----------~~~~~~~~g~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~~~~ 143 (620)
T COG1506 89 LVDVGG---LITKTAFGV----------SDARWSPDGDRIAFLTAEGASKR---------DGG---DHLFVDRLPVWFDG 143 (620)
T ss_pred EEecCC---ceeeeeccc----------ccceeCCCCCeEEEEeccccccc---------CCc---eeeeecccceeecC
Confidence 877444 222223333 67899999999999433221110 000 00000000111111
Q ss_pred cccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEec
Q 003886 263 WGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 342 (789)
Q Consensus 263 ~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~ 342 (789)
-| ....+++++|.++ +...+ ......+..+.|.+|++. ++........ . ..-...+....
T Consensus 144 ~g-----~~~~~l~~~d~~~-~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~-------~~~~~~~~~~~ 203 (620)
T COG1506 144 RG-----GERSDLYVVDIES-KLIKL--GLGNLDVVSFATDGDGRL----VASIRLDDDA-D-------PWVTNLYVLIE 203 (620)
T ss_pred CC-----CcccceEEEccCc-ccccc--cCCCCceeeeeeCCCCce----eEEeeecccc-C-------CceEeeEEEec
Confidence 01 2468899999887 44444 455556667777777776 5555533220 0 00112223322
Q ss_pred ccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccc
Q 003886 343 SLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 422 (789)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~ 422 (789)
.++.+..++........+.|.+||+.+++..+.... | ......+++++...+....
T Consensus 204 -----------------~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~d~---- 259 (620)
T COG1506 204 -----------------GNGELESLTPGEGSISKLAFDADGKSIALLGTESDR--G-LAEGDFILLLDGELGEVDG---- 259 (620)
T ss_pred -----------------CCCceEEEcCCCceeeeeeeCCCCCeeEEeccCCcc--C-ccccceEEEEeccccccce----
Confidence 456778888887889999999999999998877642 1 1233466776622222211
Q ss_pred eeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe-CCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCE
Q 003886 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDN 501 (789)
Q Consensus 423 ~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~-~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~ 501 (789)
...... . .. ......+.-++..++|.+.. .+...++.++..++....+....+ ....++.+++.
T Consensus 260 ---~~~~~~----~-~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~--~v~~f~~~~~~ 324 (620)
T COG1506 260 ---DLSSGD----D-TR-----GAWAVEGGLDGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSGDDG--GVPGFDVDGRK 324 (620)
T ss_pred ---eeccCC----c-cc-----CcHHhccccCCCcEEEEEecCCCceEEEEEeccCCceeeecCCCc--eEEEEeeCCCE
Confidence 000000 0 00 00111122355667777776 677788888765555444444434 34567779999
Q ss_pred EEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhhccccCce-eeEeeecccccceeecCCCeeEEEEE
Q 003886 502 IIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQF-SIMKIPVKGVSANLTKGAQKPFEAIF 580 (789)
Q Consensus 502 l~~~~ss~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~~g~~l~~~~ 580 (789)
+++..++++.|+++|+++.. .. ..+ +..+. ..+...++ +.+.+ .++..||.++++|+
T Consensus 325 ~~~~~s~~~~p~~i~~~~~~-~~--~~~---------~~~~~---~~~~~~~~~~~e~~-------~~~~~dG~~i~~~l 382 (620)
T COG1506 325 LALAYSSPTEPPEIYLYDRG-EE--AKL---------TSSNN---SGLKKVKLAEPEPV-------TYKSNDGETIHGWL 382 (620)
T ss_pred EEEEecCCCCccceEEEcCC-Cc--eEE---------eeccc---ccccccccCCceEE-------EEEcCCCCEEEEEE
Confidence 99999999999999999862 11 111 01111 11111111 12222 66778999999999
Q ss_pred EecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHH
Q 003886 581 VSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAID 660 (789)
Q Consensus 581 ~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~ 660 (789)
++|.++++.+++|+||++||||.++....|....+.|+++||+|+.+|+|||.|||++|.+...+++|..+++|++++++
T Consensus 383 ~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~ 462 (620)
T COG1506 383 YKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVD 462 (620)
T ss_pred ecCCCCCCCCCCCEEEEeCCCCccccccccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHH
Confidence 99999998889999999999999888878888999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCCh
Q 003886 661 HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSV 740 (789)
Q Consensus 661 ~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (789)
++.+.+.+|++||+|+|||||||||++++++.| +|+|+++.++++++..++...+...+........ .+.+
T Consensus 463 ~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~ 533 (620)
T COG1506 463 ALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFGESTEGLRFDPEENGG--------GPPE 533 (620)
T ss_pred HHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhccccchhhcCCHHHhCC--------Cccc
Confidence 999999999999999999999999999999876 8999999999888887776665544433222211 2222
Q ss_pred hhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 741 EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 741 ~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
+.+.|.++||+.++.++++|+|||||++|.+||++|+++|+++|++
T Consensus 534 -~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~ 579 (620)
T COG1506 534 -DREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKR 579 (620)
T ss_pred -ChHHHHhcChhhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHH
Confidence 6778999999999999999999999999999999999999999985
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=391.62 Aligned_cols=493 Identities=15% Similarity=0.120 Sum_probs=335.7
Q ss_pred cEEEEeCCCCCeEEEEecCCC-CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~-~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
.....|||||++|||..+..+ +..+++.++ .+|... ...+.... ..+.|++||+.|+|...++...
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-~~~i~~~~----------~~~~w~~D~~~~~y~~~~~~~~- 196 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-PELLDNVE----------PSFVWANDSWTFYYVRKHPVTL- 196 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-CccccCcc----------eEEEEeeCCCEEEEEEecCCCC-
Confidence 456789999999999877653 344566666 445311 00111111 3589999999999987743100
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCC--ceEeccCCCCCCccceEEEee-CCCCCc
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG--EVQAVKGIPKSLSVGQVVWAP-LNEGLH 310 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g--~~~~l~~~~~~~~~~~~~wSP-Dg~~~~ 310 (789)
...+||++++.++ +-+.+. ...+....-..|.+ |++.
T Consensus 197 -------------------------------------~~~~v~~h~lgt~~~~d~lv~-~e~~~~~~~~~~~s~d~~~-- 236 (686)
T PRK10115 197 -------------------------------------LPYQVWRHTIGTPASQDELVY-EEKDDTFYVSLHKTTSKHY-- 236 (686)
T ss_pred -------------------------------------CCCEEEEEECCCChhHCeEEE-eeCCCCEEEEEEEcCCCCE--
Confidence 2367999999988 444442 11111122234545 8887
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC-CCccCcceecCCCCEEEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES-ISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~-~~~~~~p~~SpDG~~la~~ 389 (789)
++..+... ..+.+++++.+. ..+..+.+... ...... +...|..+++.
T Consensus 237 --l~i~~~~~------------~~~~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~--~~~~~~~ly~~ 285 (686)
T PRK10115 237 --VVIHLASA------------TTSEVLLLDAEL---------------ADAEPFVFLPRRKDHEYS--LDHYQHRFYLR 285 (686)
T ss_pred --EEEEEECC------------ccccEEEEECcC---------------CCCCceEEEECCCCCEEE--EEeCCCEEEEE
Confidence 76544322 223577776421 22332322222 222222 22345677777
Q ss_pred ecCCCCCCCCccccceeEEeecCC-CCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeE
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPT-NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 468 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~-~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 468 (789)
++.+. ....|..+++.. +..+ .+++ ...+ ..+..+.|. ++.|++....++..
T Consensus 286 tn~~~-------~~~~l~~~~~~~~~~~~-------~l~~---~~~~--------~~i~~~~~~--~~~l~~~~~~~g~~ 338 (686)
T PRK10115 286 SNRHG-------KNFGLYRTRVRDEQQWE-------ELIP---PREN--------IMLEGFTLF--TDWLVVEERQRGLT 338 (686)
T ss_pred EcCCC-------CCceEEEecCCCcccCe-------EEEC---CCCC--------CEEEEEEEE--CCEEEEEEEeCCEE
Confidence 76642 345688887753 2111 1111 1000 012233454 55899999999999
Q ss_pred EEEEEECCCCcEEEec-CCCCCceeEEee--ecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhh
Q 003886 469 VIISVNVSSGELLRIT-PAESNFSWSLLT--LDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKV 545 (789)
Q Consensus 469 ~l~~~dl~tg~~~~lt-~~~~~~~~~~~s--~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 545 (789)
.|+.+++.++++..+. ..........++ .+++.+++..+++.+|+.+|.++..+++ ...+ +..+.
T Consensus 339 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~-~~~l---------~~~~~-- 406 (686)
T PRK10115 339 SLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE-RRVL---------KQTEV-- 406 (686)
T ss_pred EEEEEcCCCCceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc-EEEE---------EecCC--
Confidence 9999998877888776 333222222333 5567899999999999999999987543 1111 11110
Q ss_pred hhccccCceeeEeeecccccceeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEE
Q 003886 546 KSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLL 625 (789)
Q Consensus 546 ~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~ 625 (789)
..+....++...+ .+++.||.+++++++.++.....++.|+||++|||++......|....+.|+++||+|+
T Consensus 407 -~~~~~~~~~~e~v-------~~~s~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~ 478 (686)
T PRK10115 407 -PGFDAANYRSEHL-------WITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYA 478 (686)
T ss_pred -CCcCccccEEEEE-------EEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEE
Confidence 1122223344444 67788999999977765543345677999999999998878889888899999999999
Q ss_pred EEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 626 IVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 626 ~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
.+|+|||+|||+.|.+.....++..+++|+++++++|++++++|++|++|+|.|+||+++.+++.++|++|+|+|+.+|+
T Consensus 479 ~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~ 558 (686)
T PRK10115 479 IVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPF 558 (686)
T ss_pred EEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCc
Confidence 99999999999999987777777788999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhcCCCCC-cchhhhhccCccccccCCCCC-hhhHHHHHhcCccccCCCCCCC-EEEEEeCCCCCCChHHHHHHH
Q 003886 706 CNLALMVGTTDIP-DWCYVESYGSKGKDSFTESPS-VEDLTRFHSKSPISHISKVKTP-TIFLLGAQDLRVPVSNGLQVI 782 (789)
Q Consensus 706 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~~~i~~P-~Lii~G~~D~~vp~~~~~~l~ 782 (789)
.|+..++....++ .+...+.+|. |. .+..+.+.++||+.++.+++.| +||+||.+|.+||+.|+.+++
T Consensus 559 ~D~~~~~~~~~~p~~~~~~~e~G~---------p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k~~ 629 (686)
T PRK10115 559 VDVVTTMLDESIPLTTGEFEEWGN---------PQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWV 629 (686)
T ss_pred hhHhhhcccCCCCCChhHHHHhCC---------CCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcCchHHHHHH
Confidence 9998776543433 2322233332 32 2345666789999999999999 677799999999999999999
Q ss_pred HHCCC
Q 003886 783 YHIPF 787 (789)
Q Consensus 783 ~~l~~ 787 (789)
++|+.
T Consensus 630 a~Lr~ 634 (686)
T PRK10115 630 AKLRE 634 (686)
T ss_pred HHHHh
Confidence 99974
|
|
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=340.50 Aligned_cols=579 Identities=18% Similarity=0.220 Sum_probs=359.0
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
..|||.+.+.+..+....-........++.++..+. .+. +...+........|||.|++|+|+.+++ ++
T Consensus 103 ~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~wsp~~~~l~yv~~~n-----iy 171 (755)
T KOG2100|consen 103 LISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGE----KLH--PPEYEGSKIQYASWSPLGNDLAYVLHNN-----IY 171 (755)
T ss_pred ccChhhhhheeccCcccccceeeEEEEEEEEcCCCC----ccc--CcccCCCeeEEEEEcCCCCEEEEEEecc-----cc
Confidence 567888888776553222222333344444443332 110 1011112346788999999999998765 22
Q ss_pred EEe-cCCceeEEEec------CCCccccccCCCcc---cceeecCCCCEEEEEeecCCCCCCCcc-CCCCCCCCCCcCCC
Q 003886 183 ELW-SQSQLEKEFHV------PQTVHGSVYADGWF---EGISWNSDETLIAYVAEEPSPSKPTFS-LGSTKGGSSDKDCN 251 (789)
Q Consensus 183 ~i~-~~~~~~~~~~~------~~~~~g~v~~d~~~---~~~~wSpDg~~la~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 251 (789)
.-. ......+++.. -.+..+++|+++.+ ....|||||..++|......... ... ..+... ...+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~ng~~Dw~yeeEv~~~~~a~wwsp~g~~la~~~~~dt~V~-~~~~~~~~~~-~~yp~~~ 249 (755)
T KOG2100|consen 172 YQSSEEDEDVRIVSNGGEDVIFNGKPDWIYEEEVLSSDSAIWWSPDGDRLAYASFNDTKVE-TINLPGYTDD-DQYPKST 249 (755)
T ss_pred cccCcCCCceEEEecCCCceEEcCCCCceeehhhcccCccceeCCCCceeEEEEecccccc-eEEecccccc-ccCcccc
Confidence 111 11122222211 12445677776644 47789999999999887654321 111 111111 0000000
Q ss_pred CCCCcceeeCCcccccCCccCceEEEEEccCCceEecc-C---CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeee
Q 003886 252 SWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-G---IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGI 327 (789)
Q Consensus 252 ~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~---~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~ 327 (789)
.. .|... |. ......|+++|........+. . ......+..+.|.-+.+- ++-..++...
T Consensus 250 ~~----~ypk~-g~---~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----~~~~~~r~~~----- 312 (755)
T KOG2100|consen 250 NF----HYPKA-GA---PNPAVSLFVVDLHDPPRLGIPPPTNQRSGEYYVTNVKWDTTEKV----LVVWTNREQN----- 312 (755)
T ss_pred ee----ecCCC-CC---CCCeEEEEEEeCCCceeeccCCccccccCceEEEEEEEecCccE----EEEEEccCCC-----
Confidence 00 01111 11 123456888885544333211 0 111234557788888653 3333332221
Q ss_pred eeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC-CCcc--CcceecCCCCEEEEEecCCCCCCCCccccc
Q 003886 328 KYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES-ISSA--FFPRFSPDGKFLVFLSAKSSVDSGAHSATD 404 (789)
Q Consensus 328 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~-~~~~--~~p~~SpDG~~la~~s~~~~~~~g~~~~~~ 404 (789)
...+-.+|.+. . .....+....+ .... ..|.++.|+....+...... + ...
T Consensus 313 ------~~~~~~cd~~~----~----------~~~~~~~~~~~~W~~~~~~~~~~~~d~~~~~~~~~~~~---~---~~~ 366 (755)
T KOG2100|consen 313 ------ISVETLCDTPG----I----------CRVVYEESSDGGWVEHQNVEPVFSSDGSSYLKVDSVSD---G---GYN 366 (755)
T ss_pred ------eeeeEEecCcc----c----------ceeeEeccccccccccccccceEeecCCceeEEEeecc---C---CEE
Confidence 11122222200 0 00000111111 1112 35889999865555443331 1 145
Q ss_pred eeEEeecCCC-CCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe--CCeEEEEEEECCCCcEE
Q 003886 405 SLHRIDWPTN-GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--GSSQVIISVNVSSGELL 481 (789)
Q Consensus 405 ~L~~~d~~~~-~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~--~~~~~l~~~dl~tg~~~ 481 (789)
++..+.+..+ ..+.++.+.+++..+ +.|+.|+++++|.+.. .+..+||.+++.++...
T Consensus 367 hi~~~~~~~~~~~~~lt~g~w~v~~i-------------------~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~~~~ 427 (755)
T KOG2100|consen 367 HIAYLKLSNGSEPRMLTSGNWEVTSI-------------------LGYDKDSNRIYFDAYEEDPSERHLYSISLGSGTVE 427 (755)
T ss_pred EEEEEEcCCCCccccccccceEEEEe-------------------ccccCCCceEEEEecCCCCCceEEEEEEccccccc
Confidence 6777766665 555677776666542 2455788899999887 47889999999988877
Q ss_pred EecCCCC----CceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhhccccCceeeE
Q 003886 482 RITPAES----NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIM 557 (789)
Q Consensus 482 ~lt~~~~----~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~ 557 (789)
.++.... .+....++...+.++..++.|..|... +........+. +.. + +.|..++..+....+...
T Consensus 428 ~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p~~~--~~~~~~~~~~~--~~~----L-e~n~~~~~~~~~~~~p~~ 498 (755)
T KOG2100|consen 428 SLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPKVPDGQ--LTRHSSKNSKT--IVV----L-ETNEELKKTIENVALPIV 498 (755)
T ss_pred cccccCCCCcceEEEEecCCcccEEEEEccCCCCCcce--eeccccccceE--EEE----e-ccChhhHHHhhcccCCcc
Confidence 7765543 222335555678889999999988541 11111110111 111 1 345555554543322222
Q ss_pred eeecccccceeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch-hh--HHHHHHHHHCCcEEEEEcCCCCCC
Q 003886 558 KIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SY--SKSLAFLSSVGYSLLIVNYRGSLG 634 (789)
Q Consensus 558 ~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~--~~~~~~la~~Gy~V~~~d~rGs~G 634 (789)
+.- +.. .+|...++.+++|+++++.+++|++|.+||||++.... .| .+....+..+|++|+.+|+||++|
T Consensus 499 ~~~------~i~-~~~~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~ 571 (755)
T KOG2100|consen 499 EFG------KIE-IDGITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGG 571 (755)
T ss_pred eeE------EEE-eccEEEEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCC
Confidence 110 111 27889999999999999999999999999999855433 22 223345678999999999999999
Q ss_pred CCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCC-CceeEEEEeCCccchhhhhc
Q 003886 635 FGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP-DKFVAAAARNPLCNLALMVG 713 (789)
Q Consensus 635 ~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p-~~~~a~v~~~pv~~~~~~~~ 713 (789)
+|.+++..+++++|..+++|+..+++++++++++|.+||+|+|+|+|||+++.++.+.+ +.|||+++++||+|+. ++.
T Consensus 572 ~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~-~yd 650 (755)
T KOG2100|consen 572 YGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL-YYD 650 (755)
T ss_pred cchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-eec
Confidence 99999999999999999999999999999999999999999999999999999999887 7899999999999986 433
Q ss_pred CCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCE-EEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 714 TTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPT-IFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~-Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
.. ..+++|+.+. ++...|.+.++...+.+++.|. |++||+.|.+|+++|+.+++++|++.
T Consensus 651 s~--------------~terymg~p~-~~~~~y~e~~~~~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~ 711 (755)
T KOG2100|consen 651 ST--------------YTERYMGLPS-ENDKGYEESSVSSPANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNA 711 (755)
T ss_pred cc--------------ccHhhcCCCc-cccchhhhccccchhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHC
Confidence 22 3356666665 3344488999999999999886 99999999999999999999999753
|
|
| >KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=292.89 Aligned_cols=305 Identities=18% Similarity=0.236 Sum_probs=234.3
Q ss_pred CCCEEEEEEEeCC--eEEEEEEECC-CCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccCCCceee
Q 003886 454 DGCTMLLSSIWGS--SQVIISVNVS-SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWS 530 (789)
Q Consensus 454 Dg~~l~~~~~~~~--~~~l~~~dl~-tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~~~~ 530 (789)
--+.+||.+..++ ..+||.+... .|++.++|...-.++. .++.+=+.++..+++-..|+++..+.+..++... +
T Consensus 514 ~~~LVYf~gt~d~PlE~hLyvvsye~~g~~~rlt~~g~sh~~-~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~~-l- 590 (867)
T KOG2281|consen 514 VRKLVYFVGTKDTPLEHHLYVVSYENPGEIARLTEPGYSHSC-ELDQQCDHFVSYYSSVGSPPCVSLYSLSWPENDP-L- 590 (867)
T ss_pred cceEEEEEccCCCCceeeEEEEEEecCCceeeccCCCcccch-hhhhhhhhHhhhhhcCCCCceEEEEeccCCccCc-c-
Confidence 3456778877664 5689999987 8999999987653332 3555556688888999999999999887654110 0
Q ss_pred eeccCCCCCCCchhhhhccccCceeeEeeecccccceeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch-h
Q 003886 531 WLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-S 609 (789)
Q Consensus 531 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~ 609 (789)
.++... .....+...-...-+| ..-+.|.+..|..+.|++++|.++++++|||+|++++|||+-+... .
T Consensus 591 ----~~q~~~----~~~l~~~~~~~Pdy~p--~eif~fqs~tg~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnns 660 (867)
T KOG2281|consen 591 ----PKQVSF----WAILVSGAPPPPDYVP--PEIFSFQSKTGLTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNS 660 (867)
T ss_pred ----cchhhH----HHHHHhcCCCCCccCC--hhheeeecCCCcEEEEEEEccccCCCCCCCceEEEEcCCCceEEeecc
Confidence 000000 0011111111111111 0113556677899999999999999999999999999999865433 3
Q ss_pred hH----HHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHc-CCCCCccEEEEEcCccHHH
Q 003886 610 YS----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFL 684 (789)
Q Consensus 610 ~~----~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~ 684 (789)
|. ...+.|+++||.|+.+|.|||.-+|-.|...+..++|..+++|+..++++|.++ +++|.+||+|-|||||||+
T Consensus 661 fkgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYL 740 (867)
T KOG2281|consen 661 FKGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYL 740 (867)
T ss_pred ccceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHH
Confidence 33 245689999999999999999999999999999999999999999999999997 5899999999999999999
Q ss_pred HHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCC---CC
Q 003886 685 TTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK---TP 761 (789)
Q Consensus 685 a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~---~P 761 (789)
++.+++++|+.|+++|+.+||++|..+ ...+.++||+.|. .+-..|...|...++.++. ..
T Consensus 741 Slm~L~~~P~IfrvAIAGapVT~W~~Y---------------DTgYTERYMg~P~-~nE~gY~agSV~~~VeklpdepnR 804 (867)
T KOG2281|consen 741 SLMGLAQYPNIFRVAIAGAPVTDWRLY---------------DTGYTERYMGYPD-NNEHGYGAGSVAGHVEKLPDEPNR 804 (867)
T ss_pred HHHHhhcCcceeeEEeccCcceeeeee---------------cccchhhhcCCCc-cchhcccchhHHHHHhhCCCCCce
Confidence 999999999999999999999986433 2345789999985 3445677777777777764 45
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 762 TIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 762 ~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
+|++||--|++|++.+...|..+|-+
T Consensus 805 LlLvHGliDENVHF~Hts~Lvs~lvk 830 (867)
T KOG2281|consen 805 LLLVHGLIDENVHFAHTSRLVSALVK 830 (867)
T ss_pred EEEEecccccchhhhhHHHHHHHHHh
Confidence 99999999999999999999988754
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=261.23 Aligned_cols=271 Identities=16% Similarity=0.195 Sum_probs=203.5
Q ss_pred CceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCe--EEEEecCCCCCCeEEEEe
Q 003886 108 GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSK--LLVVRNPENESPIQFELW 185 (789)
Q Consensus 108 g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~--la~~~~~~~~~~~~~~i~ 185 (789)
+++|+|+....+...++.++.||+++. +|++.++||... .....|+|||||++ ++|++..+ +..++|.++
T Consensus 146 ~~~iayv~~~~~~~~~~~~~~l~~~d~--dG~~~~~lt~~~-----~~~~sP~wSPDG~~~~~~y~S~~~-g~~~I~~~~ 217 (428)
T PRK01029 146 SGKIIFSLSTTNSDTELKQGELWSVDY--DGQNLRPLTQEH-----SLSITPTWMHIGSGFPYLYVSYKL-GVPKIFLGS 217 (428)
T ss_pred cCEEEEEEeeCCcccccccceEEEEcC--CCCCceEcccCC-----CCcccceEccCCCceEEEEEEccC-CCceEEEEE
Confidence 468899988777666667889999886 566788888765 34678999999998 55688766 678999999
Q ss_pred -cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcc
Q 003886 186 -SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWG 264 (789)
Q Consensus 186 -~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g 264 (789)
.+|+.++++..+... ..++|||||++|||++...
T Consensus 218 l~~g~~~~lt~~~g~~----------~~p~wSPDG~~Laf~s~~~----------------------------------- 252 (428)
T PRK01029 218 LENPAGKKILALQGNQ----------LMPTFSPRKKLLAFISDRY----------------------------------- 252 (428)
T ss_pred CCCCCceEeecCCCCc----------cceEECCCCCEEEEEECCC-----------------------------------
Confidence 778888888876554 5799999999999987532
Q ss_pred cccCCccCceEEE--EEccC---CceEeccCCCCC-CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceE
Q 003886 265 ETYAGKRQPSLFV--ININS---GEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (789)
Q Consensus 265 ~~~~~~~~~~l~v--~d~~~---g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~ 338 (789)
+..++|+ +++.+ ++.+++ +... .....++|||||+. |+|++++.+ ...||
T Consensus 253 ------g~~di~~~~~~~~~g~~g~~~~l--t~~~~~~~~~p~wSPDG~~----Laf~s~~~g------------~~~ly 308 (428)
T PRK01029 253 ------GNPDLFIQSFSLETGAIGKPRRL--LNEAFGTQGNPSFSPDGTR----LVFVSNKDG------------RPRIY 308 (428)
T ss_pred ------CCcceeEEEeecccCCCCcceEe--ecCCCCCcCCeEECCCCCE----EEEEECCCC------------CceEE
Confidence 1234555 45554 466777 3333 23467999999999 999985332 23699
Q ss_pred EEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCC
Q 003886 339 AVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 418 (789)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~ 418 (789)
+++++. .++..++|+........|.|||||++|+|.+... +..+|+++|+.+++.+.
T Consensus 309 ~~~~~~---------------~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~--------g~~~I~v~dl~~g~~~~ 365 (428)
T PRK01029 309 IMQIDP---------------EGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK--------GVRQICVYDLATGRDYQ 365 (428)
T ss_pred EEECcc---------------cccceEEeccCCCCccceeECCCCCEEEEEEcCC--------CCcEEEEEECCCCCeEE
Confidence 998721 2355778887766778999999999999998764 24589999999887765
Q ss_pred cccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeec
Q 003886 419 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLD 498 (789)
Q Consensus 419 ~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~d 498 (789)
++.... ....+.|+|||+.|+|.+...+...||.+|+++++.++++...+....+.|+|-
T Consensus 366 Lt~~~~--------------------~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 366 LTTSPE--------------------NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred ccCCCC--------------------CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCC
Confidence 543210 123578999999999998877888999999999999999876655455667654
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-24 Score=228.00 Aligned_cols=305 Identities=17% Similarity=0.166 Sum_probs=230.5
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCcee-EEee--ecCCEEEEEEeCCCCCCeEEEEeecccCCCceeee
Q 003886 455 GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSW-SLLT--LDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSW 531 (789)
Q Consensus 455 g~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~-~~~s--~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~~~~~ 531 (789)
.+.|++.-...+...++..+..+|+..-|......++. ...+ .+.+.|.+.++++++|..++-+|+.+++ ...+.-
T Consensus 327 ~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~e-r~~Lkq 405 (682)
T COG1770 327 ADHLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGE-RTLLKQ 405 (682)
T ss_pred ccEEEEEecccCCceEEEEecCCCceeeEEecchhhhccccCCCCCCCccEEEEeecccccceeEEeeccCCc-EEEEEe
Confidence 35677776777888899999988988887665542221 1222 3567899999999999999999998765 111111
Q ss_pred eccCCCCCCCchhhhhccccCceeeEeeecccccceeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhH
Q 003886 532 LNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS 611 (789)
Q Consensus 532 ~~~~~~~~~~n~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~ 611 (789)
++| . ..++..++....| ..+..||..++..++.-++++..++.|++++.+|..+......|+
T Consensus 406 qeV----~-------~g~dp~~Y~s~ri-------wa~a~dgv~VPVSLvyrkd~~~~g~~p~lLygYGaYG~s~~p~Fs 467 (682)
T COG1770 406 QEV----P-------GGFDPEDYVSRRI-------WATADDGVQVPVSLVYRKDTKLDGSAPLLLYGYGAYGISMDPSFS 467 (682)
T ss_pred ccC----C-------CCCChhHeEEEEE-------EEEcCCCcEeeEEEEEecccCCCCCCcEEEEEeccccccCCcCcc
Confidence 111 1 1122233444444 345579999999998877777788999999999988877777887
Q ss_pred HHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHh
Q 003886 612 KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 691 (789)
Q Consensus 612 ~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~ 691 (789)
...--|..+|++......||++..|+.|.+..........+.|++++.++|+++++.+.++|+++|+|.||+++..++.+
T Consensus 468 ~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~ 547 (682)
T COG1770 468 IARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANM 547 (682)
T ss_pred cceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhh
Confidence 66667889999999999999888899998776554455679999999999999999999999999999999999999999
Q ss_pred CCCceeEEEEeCCccchhhhhcCCCCC--cchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCC-CCEEEEEeC
Q 003886 692 APDKFVAAAARNPLCNLALMVGTTDIP--DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGA 768 (789)
Q Consensus 692 ~p~~~~a~v~~~pv~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Lii~G~ 768 (789)
.|++|+++|+..|+.|...-+....+| .+.+.+ +.+....+..+.+..+||..++..-. .|+|++.|.
T Consensus 548 ~P~lf~~iiA~VPFVDvltTMlD~slPLT~~E~~E---------WGNP~d~e~y~yikSYSPYdNV~a~~YP~ilv~~Gl 618 (682)
T COG1770 548 APDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEWDE---------WGNPLDPEYYDYIKSYSPYDNVEAQPYPAILVTTGL 618 (682)
T ss_pred ChhhhhheeecCCccchhhhhcCCCCCCCccchhh---------hCCcCCHHHHHHHhhcCchhccccCCCCceEEEccc
Confidence 999999999999999964433322222 111111 22223445667778899999987655 558999999
Q ss_pred CCCCCChHHHHHHHHHCCC
Q 003886 769 QDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 769 ~D~~vp~~~~~~l~~~l~~ 787 (789)
.|.+|...+..+..++|+.
T Consensus 619 ~D~rV~YwEpAKWvAkLR~ 637 (682)
T COG1770 619 NDPRVQYWEPAKWVAKLRE 637 (682)
T ss_pred cCCccccchHHHHHHHHhh
Confidence 9999999999999998864
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=247.86 Aligned_cols=278 Identities=16% Similarity=0.211 Sum_probs=205.3
Q ss_pred HHHHHHhhcCccccceEEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeC
Q 003886 83 SKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPS 162 (789)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~S 162 (789)
-.+|+.++..+.... ++|+|+....+ ++.++.||+++. ++.+.+++|.+. ..+..|+||
T Consensus 149 d~i~~~ltg~~g~f~-----------~riayv~~~~~---~~~~~~l~~~d~--dg~~~~~lt~~~-----~~~~~p~wS 207 (429)
T PRK03629 149 DEVFEKLTGIKGAFR-----------TRIAYVVQTNG---GQFPYELRVSDY--DGYNQFVVHRSP-----QPLMSPAWS 207 (429)
T ss_pred HHHHHHhcCCCCccC-----------CeEEEEEeeCC---CCcceeEEEEcC--CCCCCEEeecCC-----CceeeeEEc
Confidence 345666666555443 47788876533 355789999886 455667777665 457899999
Q ss_pred CCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCC
Q 003886 163 PSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 241 (789)
Q Consensus 163 PdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~ 241 (789)
|||++|||++... +..+++..+ .+|+.++++..+... ..+.|||||++|+|+....
T Consensus 208 PDG~~la~~s~~~-g~~~i~i~dl~~G~~~~l~~~~~~~----------~~~~~SPDG~~La~~~~~~------------ 264 (429)
T PRK03629 208 PDGSKLAYVTFES-GRSALVIQTLANGAVRQVASFPRHN----------GAPAFSPDGSKLAFALSKT------------ 264 (429)
T ss_pred CCCCEEEEEEecC-CCcEEEEEECCCCCeEEccCCCCCc----------CCeEECCCCCEEEEEEcCC------------
Confidence 9999999998654 456788777 567767666554433 5799999999999975432
Q ss_pred CCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCC
Q 003886 242 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 321 (789)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~ 321 (789)
+..+||++|+++++.+++ +........+.|||||+. |+|++++.+
T Consensus 265 -----------------------------g~~~I~~~d~~tg~~~~l--t~~~~~~~~~~wSPDG~~----I~f~s~~~g 309 (429)
T PRK03629 265 -----------------------------GSLNLYVMDLASGQIRQV--TDGRSNNTEPTWFPDSQN----LAYTSDQAG 309 (429)
T ss_pred -----------------------------CCcEEEEEECCCCCEEEc--cCCCCCcCceEECCCCCE----EEEEeCCCC
Confidence 235799999999999998 455556778999999999 999985322
Q ss_pred ceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCcc
Q 003886 322 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401 (789)
Q Consensus 322 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~ 401 (789)
..+||.+|+ +++..++|+........|.|||||++|+|.+...
T Consensus 310 ------------~~~Iy~~d~-----------------~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-------- 352 (429)
T PRK03629 310 ------------RPQVYKVNI-----------------NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG-------- 352 (429)
T ss_pred ------------CceEEEEEC-----------------CCCCeEEeecCCCCccCEEECCCCCEEEEEEccC--------
Confidence 237999998 7778888877665677899999999999988654
Q ss_pred ccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003886 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (789)
Q Consensus 402 ~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~ 481 (789)
+..+|+++|+.++..+.++... ....+.|+|||+.|+|.+..++...|+.++++++..+
T Consensus 353 g~~~I~~~dl~~g~~~~Lt~~~---------------------~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~ 411 (429)
T PRK03629 353 GQQHIAKQDLATGGVQVLTDTF---------------------LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA 411 (429)
T ss_pred CCceEEEEECCCCCeEEeCCCC---------------------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeE
Confidence 2357999999887655444211 1135689999999999998877788999999877788
Q ss_pred EecCCCCCceeEEeee
Q 003886 482 RITPAESNFSWSLLTL 497 (789)
Q Consensus 482 ~lt~~~~~~~~~~~s~ 497 (789)
+++...+....+.|+|
T Consensus 412 ~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 412 RLPATDGQVKFPAWSP 427 (429)
T ss_pred ECccCCCCcCCcccCC
Confidence 8875444444445554
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=240.50 Aligned_cols=278 Identities=13% Similarity=0.122 Sum_probs=201.4
Q ss_pred HHHHHHhhcCccccceEEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeC
Q 003886 83 SKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPS 162 (789)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~S 162 (789)
-.+|+.++..+.+.. ++|+|+..... .+...+.||+++. ++.+.+++|... ..+..|+||
T Consensus 151 d~i~~~ltg~~g~f~-----------~~iafv~~~~~--~~~~~~~l~~~d~--dg~~~~~lt~~~-----~~v~~p~wS 210 (435)
T PRK05137 151 DAIYERLTGEKGYFD-----------TRIVYVAESGP--KNKRIKRLAIMDQ--DGANVRYLTDGS-----SLVLTPRFS 210 (435)
T ss_pred HHHHHHHhCCCCcCC-----------CeEEEEEeeCC--CCCcceEEEEECC--CCCCcEEEecCC-----CCeEeeEEC
Confidence 446666766553322 47788765321 2234678999886 555667787654 458899999
Q ss_pred CCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCC
Q 003886 163 PSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 241 (789)
Q Consensus 163 PdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~ 241 (789)
|||++|+|++..+ +..+++.++ .+++.++++...... ..++|||||++|+|.....
T Consensus 211 pDG~~lay~s~~~-g~~~i~~~dl~~g~~~~l~~~~g~~----------~~~~~SPDG~~la~~~~~~------------ 267 (435)
T PRK05137 211 PNRQEITYMSYAN-GRPRVYLLDLETGQRELVGNFPGMT----------FAPRFSPDGRKVVMSLSQG------------ 267 (435)
T ss_pred CCCCEEEEEEecC-CCCEEEEEECCCCcEEEeecCCCcc----------cCcEECCCCCEEEEEEecC------------
Confidence 9999999998765 457788877 566666666544333 6889999999999976432
Q ss_pred CCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCC
Q 003886 242 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 321 (789)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~ 321 (789)
+..+||++|+++++.+++ +........+.|||||++ |+|++++.+
T Consensus 268 -----------------------------g~~~Iy~~d~~~~~~~~L--t~~~~~~~~~~~spDG~~----i~f~s~~~g 312 (435)
T PRK05137 268 -----------------------------GNTDIYTMDLRSGTTTRL--TDSPAIDTSPSYSPDGSQ----IVFESDRSG 312 (435)
T ss_pred -----------------------------CCceEEEEECCCCceEEc--cCCCCccCceeEcCCCCE----EEEEECCCC
Confidence 347899999999999998 444444567999999999 999985332
Q ss_pred ceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCcc
Q 003886 322 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401 (789)
Q Consensus 322 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~ 401 (789)
..+||++|+ +++..++|+...+....|.|||||++|+|.+...
T Consensus 313 ------------~~~Iy~~d~-----------------~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~-------- 355 (435)
T PRK05137 313 ------------SPQLYVMNA-----------------DGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGG-------- 355 (435)
T ss_pred ------------CCeEEEEEC-----------------CCCCeEEeecCCCcccCeEECCCCCEEEEEEcCC--------
Confidence 237999998 7788889987766677899999999999988653
Q ss_pred ccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCe---EEEEEEECCCC
Q 003886 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS---QVIISVNVSSG 478 (789)
Q Consensus 402 ~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~---~~l~~~dl~tg 478 (789)
+..+|+++|+.++..+.++.+. ....+.|+|||+.|+|.+...+. ..||.+|++++
T Consensus 356 ~~~~i~~~d~~~~~~~~lt~~~---------------------~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 356 GQFSIGVMKPDGSGERILTSGF---------------------LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CceEEEEEECCCCceEeccCCC---------------------CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 2357999998765544333211 13467899999999998876554 58999999888
Q ss_pred cEEEecCCCCCceeEEeee
Q 003886 479 ELLRITPAESNFSWSLLTL 497 (789)
Q Consensus 479 ~~~~lt~~~~~~~~~~~s~ 497 (789)
+.++++. .+....+.|++
T Consensus 415 ~~~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 415 NEREVPT-PGDASDPAWSP 432 (435)
T ss_pred ceEEccC-CCCccCcccCC
Confidence 8887764 33334444543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-24 Score=236.76 Aligned_cols=277 Identities=16% Similarity=0.180 Sum_probs=199.4
Q ss_pred HHHHHhhcCccccceEEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCC
Q 003886 84 KLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP 163 (789)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SP 163 (789)
.+|+.++..+.+.. .+++|+.... .++....||+.+. ++.+.++++..+ ..+..|+|||
T Consensus 169 ~i~~~ltG~~g~f~-----------~riayv~~~~---~~~~~~~l~i~d~--dG~~~~~l~~~~-----~~~~~p~wSP 227 (448)
T PRK04792 169 IVYEKLTGERGAFL-----------TRIAYVVVND---KDKYPYQLMIADY--DGYNEQMLLRSP-----EPLMSPAWSP 227 (448)
T ss_pred HHHHHhcCCCcccc-----------CEEEEEEeeC---CCCCceEEEEEeC--CCCCceEeecCC-----CcccCceECC
Confidence 45566665554444 3566776543 1234568888775 455566777665 4577899999
Q ss_pred CCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCC
Q 003886 164 SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK 242 (789)
Q Consensus 164 dG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~ 242 (789)
||++|+|++..+ +..++|.++ .+++..+++..+... ..+.|||||++|+|+....
T Consensus 228 DG~~La~~s~~~-g~~~L~~~dl~tg~~~~lt~~~g~~----------~~~~wSPDG~~La~~~~~~------------- 283 (448)
T PRK04792 228 DGRKLAYVSFEN-RKAEIFVQDIYTQVREKVTSFPGIN----------GAPRFSPDGKKLALVLSKD------------- 283 (448)
T ss_pred CCCEEEEEEecC-CCcEEEEEECCCCCeEEecCCCCCc----------CCeeECCCCCEEEEEEeCC-------------
Confidence 999999998764 567888888 566666665544332 5789999999999975432
Q ss_pred CCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCc
Q 003886 243 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 322 (789)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~ 322 (789)
+..+||++|+++++.+++ +........+.|||||+. |+|++.+.+
T Consensus 284 ----------------------------g~~~Iy~~dl~tg~~~~l--t~~~~~~~~p~wSpDG~~----I~f~s~~~g- 328 (448)
T PRK04792 284 ----------------------------GQPEIYVVDIATKALTRI--TRHRAIDTEPSWHPDGKS----LIFTSERGG- 328 (448)
T ss_pred ----------------------------CCeEEEEEECCCCCeEEC--ccCCCCccceEECCCCCE----EEEEECCCC-
Confidence 346899999999999988 444445668999999999 999985332
Q ss_pred eeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccc
Q 003886 323 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 402 (789)
Q Consensus 323 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~ 402 (789)
..+||++|+ ++++.++|+........|+|||||++|+|.+... +
T Consensus 329 -----------~~~Iy~~dl-----------------~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~--------g 372 (448)
T PRK04792 329 -----------KPQIYRVNL-----------------ASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTN--------G 372 (448)
T ss_pred -----------CceEEEEEC-----------------CCCCEEEEecCCCCCcCeeECCCCCEEEEEEecC--------C
Confidence 237999998 7788888875544456799999999999987653 3
Q ss_pred cceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE
Q 003886 403 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 482 (789)
Q Consensus 403 ~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~ 482 (789)
..+|+++|+.++..+.++.... ...+.|+|||+.|+|++..++...||.++.+++..++
T Consensus 373 ~~~I~~~dl~~g~~~~lt~~~~---------------------d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~ 431 (448)
T PRK04792 373 KFNIARQDLETGAMQVLTSTRL---------------------DESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKAR 431 (448)
T ss_pred ceEEEEEECCCCCeEEccCCCC---------------------CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEE
Confidence 4579999998876554432210 1245799999999999988888899999997777777
Q ss_pred ecCCCCCceeEEeee
Q 003886 483 ITPAESNFSWSLLTL 497 (789)
Q Consensus 483 lt~~~~~~~~~~~s~ 497 (789)
++...+....+.|+|
T Consensus 432 l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 432 LPAGQGEVKSPAWSP 446 (448)
T ss_pred CcCCCCCcCCCccCC
Confidence 765544444445554
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-24 Score=237.58 Aligned_cols=263 Identities=15% Similarity=0.129 Sum_probs=193.0
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC
Q 003886 109 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ 187 (789)
Q Consensus 109 ~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~ 187 (789)
++|+|+.... ..++.+..||+++. ++.+.++++... ..+..|+|||||++|+|++..+ +..+++.++ .+
T Consensus 168 ~~ia~v~~~~--~~~~~~~~l~i~D~--~g~~~~~lt~~~-----~~v~~p~wSpDg~~la~~s~~~-~~~~l~~~dl~~ 237 (433)
T PRK04922 168 TRIAYVTVSG--AGGAMRYALQVADS--DGYNPQTILRSA-----EPILSPAWSPDGKKLAYVSFER-GRSAIYVQDLAT 237 (433)
T ss_pred ceEEEEEEeC--CCCCceEEEEEECC--CCCCceEeecCC-----CccccccCCCCCCEEEEEecCC-CCcEEEEEECCC
Confidence 4677876543 22345678999876 455667777654 4578899999999999998764 567788877 56
Q ss_pred CceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCccccc
Q 003886 188 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY 267 (789)
Q Consensus 188 ~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~ 267 (789)
++..+++..+... ..++|||||++|+|.....
T Consensus 238 g~~~~l~~~~g~~----------~~~~~SpDG~~l~~~~s~~-------------------------------------- 269 (433)
T PRK04922 238 GQRELVASFRGIN----------GAPSFSPDGRRLALTLSRD-------------------------------------- 269 (433)
T ss_pred CCEEEeccCCCCc----------cCceECCCCCEEEEEEeCC--------------------------------------
Confidence 6666665543322 5789999999999976432
Q ss_pred CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc
Q 003886 268 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (789)
Q Consensus 268 ~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (789)
+..+||++|+++++.+++ +........+.|||||++ |+|++++.+ ..+||.+++
T Consensus 270 ---g~~~Iy~~d~~~g~~~~l--t~~~~~~~~~~~spDG~~----l~f~sd~~g------------~~~iy~~dl----- 323 (433)
T PRK04922 270 ---GNPEIYVMDLGSRQLTRL--TNHFGIDTEPTWAPDGKS----IYFTSDRGG------------RPQIYRVAA----- 323 (433)
T ss_pred ---CCceEEEEECCCCCeEEC--ccCCCCccceEECCCCCE----EEEEECCCC------------CceEEEEEC-----
Confidence 346899999999999888 443334567899999999 999985332 237999998
Q ss_pred hhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEE
Q 003886 348 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~ 427 (789)
++++.++|+........|+|||||++|+|.+... +..+|+++|+.++..+.++.+.
T Consensus 324 ------------~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~--------~~~~I~v~d~~~g~~~~Lt~~~---- 379 (433)
T PRK04922 324 ------------SGGSAERLTFQGNYNARASVSPDGKKIAMVHGSG--------GQYRIAVMDLSTGSVRTLTPGS---- 379 (433)
T ss_pred ------------CCCCeEEeecCCCCccCEEECCCCCEEEEEECCC--------CceeEEEEECCCCCeEECCCCC----
Confidence 6777888876555566899999999999987643 2357999999887665544321
Q ss_pred eeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEee
Q 003886 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLT 496 (789)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s 496 (789)
....+.|+|||+.|+|.+...+...||.++++++..++++...+....+.|+
T Consensus 380 -----------------~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~~~~p~ws 431 (433)
T PRK04922 380 -----------------LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSADGEVREPAWS 431 (433)
T ss_pred -----------------CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEcccCCCCCCCCccC
Confidence 1135689999999999998888889999999887777787554433434444
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-24 Score=234.28 Aligned_cols=260 Identities=15% Similarity=0.175 Sum_probs=189.4
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC
Q 003886 109 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ 187 (789)
Q Consensus 109 ~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~ 187 (789)
.+++|.... .....||.++. ++...++++... ..+..|+|||||++|+|++..+ +..++|..+ .+
T Consensus 164 ~~iayv~~~------~~~~~L~~~D~--dG~~~~~l~~~~-----~~v~~p~wSPDG~~la~~s~~~-~~~~I~~~dl~~ 229 (427)
T PRK02889 164 TRIAYVIKT------GNRYQLQISDA--DGQNAQSALSSP-----EPIISPAWSPDGTKLAYVSFES-KKPVVYVHDLAT 229 (427)
T ss_pred cEEEEEEcc------CCccEEEEECC--CCCCceEeccCC-----CCcccceEcCCCCEEEEEEccC-CCcEEEEEECCC
Confidence 468887532 23568998875 455566676554 4577899999999999998764 566788877 56
Q ss_pred CceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCccccc
Q 003886 188 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY 267 (789)
Q Consensus 188 ~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~ 267 (789)
++..+++...... ..+.|||||++|+|.....
T Consensus 230 g~~~~l~~~~g~~----------~~~~~SPDG~~la~~~~~~-------------------------------------- 261 (427)
T PRK02889 230 GRRRVVANFKGSN----------SAPAWSPDGRTLAVALSRD-------------------------------------- 261 (427)
T ss_pred CCEEEeecCCCCc----------cceEECCCCCEEEEEEccC--------------------------------------
Confidence 6666665544333 6799999999999975432
Q ss_pred CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc
Q 003886 268 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (789)
Q Consensus 268 ~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (789)
+..+||++|+.+++.+++ +........+.|||||++ |+|++++.+ ..+||.+++
T Consensus 262 ---g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~wSpDG~~----l~f~s~~~g------------~~~Iy~~~~----- 315 (427)
T PRK02889 262 ---GNSQIYTVNADGSGLRRL--TQSSGIDTEPFFSPDGRS----IYFTSDRGG------------APQIYRMPA----- 315 (427)
T ss_pred ---CCceEEEEECCCCCcEEC--CCCCCCCcCeEEcCCCCE----EEEEecCCC------------CcEEEEEEC-----
Confidence 347899999999988888 444444567899999999 999875332 237999997
Q ss_pred hhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEE
Q 003886 348 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~ 427 (789)
+++..++++........|.|||||++|+|.+... +..+|+++|+.+++.+.++...
T Consensus 316 ------------~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~--------g~~~I~v~d~~~g~~~~lt~~~---- 371 (427)
T PRK02889 316 ------------SGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG--------GAFKLYVQDLATGQVTALTDTT---- 371 (427)
T ss_pred ------------CCCceEEEecCCCCcCceEECCCCCEEEEEEccC--------CcEEEEEEECCCCCeEEccCCC----
Confidence 6677777775545566899999999999998654 2357999999887665444221
Q ss_pred eeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeee
Q 003886 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTL 497 (789)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~ 497 (789)
....+.|+|||+.|+|.+..++...|+.++++++..+++....+....+.|+|
T Consensus 372 -----------------~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 372 -----------------RDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred -----------------CccCceECCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCCCCCCccCC
Confidence 11356899999999999998888899999996655666654444444445554
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=228.61 Aligned_cols=255 Identities=10% Similarity=0.014 Sum_probs=186.4
Q ss_pred eEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCe-EEEEecCCCCCCeEEEEe-cC
Q 003886 110 QAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSK-LLVVRNPENESPIQFELW-SQ 187 (789)
Q Consensus 110 ~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~-la~~~~~~~~~~~~~~i~-~~ 187 (789)
+++|..... +.+.+.||+.+. ++.+.++++.+. ....|.|||||++ ++|++..+ +.+++|.++ .+
T Consensus 156 r~~~v~~~~----~~~~~~l~~~d~--dg~~~~~~~~~~------~~~~p~wSpDG~~~i~y~s~~~-~~~~Iyv~dl~t 222 (419)
T PRK04043 156 RKVVFSKYT----GPKKSNIVLADY--TLTYQKVIVKGG------LNIFPKWANKEQTAFYYTSYGE-RKPTLYKYNLYT 222 (419)
T ss_pred eEEEEEEcc----CCCcceEEEECC--CCCceeEEccCC------CeEeEEECCCCCcEEEEEEccC-CCCEEEEEECCC
Confidence 566665421 124689999886 455566666543 3668999999997 66666653 467899998 67
Q ss_pred CceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCccccc
Q 003886 188 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY 267 (789)
Q Consensus 188 ~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~ 267 (789)
++.++++...+.. ..+.|||||++|+|.....
T Consensus 223 g~~~~lt~~~g~~----------~~~~~SPDG~~la~~~~~~-------------------------------------- 254 (419)
T PRK04043 223 GKKEKIASSQGML----------VVSDVSKDGSKLLLTMAPK-------------------------------------- 254 (419)
T ss_pred CcEEEEecCCCcE----------EeeEECCCCCEEEEEEccC--------------------------------------
Confidence 8888887644333 4688999999999986532
Q ss_pred CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc
Q 003886 268 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (789)
Q Consensus 268 ~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (789)
++.+||++|+++++.++| +........+.|||||++ |+|++++.+ ..+||++|+
T Consensus 255 ---g~~~Iy~~dl~~g~~~~L--T~~~~~d~~p~~SPDG~~----I~F~Sdr~g------------~~~Iy~~dl----- 308 (419)
T PRK04043 255 ---GQPDIYLYDTNTKTLTQI--TNYPGIDVNGNFVEDDKR----IVFVSDRLG------------YPNIFMKKL----- 308 (419)
T ss_pred ---CCcEEEEEECCCCcEEEc--ccCCCccCccEECCCCCE----EEEEECCCC------------CceEEEEEC-----
Confidence 347899999999999999 444434457899999999 999996432 248999999
Q ss_pred hhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEE
Q 003886 348 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~ 427 (789)
++++.++++.... ..+.|||||++|+|++.......+ ....+|+++|+++++.+.++....
T Consensus 309 ------------~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~--~~~~~I~v~d~~~g~~~~LT~~~~--- 369 (419)
T PRK04043 309 ------------NSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFG--KNTFNLYLISTNSDYIRRLTANGV--- 369 (419)
T ss_pred ------------CCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCcccC--CCCcEEEEEECCCCCeEECCCCCC---
Confidence 7888888886532 247999999999999875421100 123689999999887766654310
Q ss_pred eeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC
Q 003886 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 488 (789)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~ 488 (789)
...+.|+|||+.|+|.+..++...|+.+++++....++....+
T Consensus 370 ------------------~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g 412 (419)
T PRK04043 370 ------------------NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVG 412 (419)
T ss_pred ------------------cCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCC
Confidence 1246899999999999888888899999997777777765444
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-23 Score=230.40 Aligned_cols=264 Identities=15% Similarity=0.175 Sum_probs=191.1
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC
Q 003886 109 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ 187 (789)
Q Consensus 109 ~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~ 187 (789)
++++|+....+ ..+.+..||+.+. ++.+.++++... ..+..|+|||||++|+|++..+ +..++|.++ .+
T Consensus 163 ~~ia~v~~~~~--~~~~~~~l~~~d~--~g~~~~~l~~~~-----~~~~~p~wSpDG~~la~~s~~~-~~~~l~~~~l~~ 232 (430)
T PRK00178 163 TRILYVTAERF--SVNTRYTLQRSDY--DGARAVTLLQSR-----EPILSPRWSPDGKRIAYVSFEQ-KRPRIFVQNLDT 232 (430)
T ss_pred eeEEEEEeeCC--CCCcceEEEEECC--CCCCceEEecCC-----CceeeeeECCCCCEEEEEEcCC-CCCEEEEEECCC
Confidence 46888765433 1234557888775 445566676554 3478899999999999998765 566888888 56
Q ss_pred CceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCccccc
Q 003886 188 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY 267 (789)
Q Consensus 188 ~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~ 267 (789)
++.++++...... ..++|||||++|+|.....
T Consensus 233 g~~~~l~~~~g~~----------~~~~~SpDG~~la~~~~~~-------------------------------------- 264 (430)
T PRK00178 233 GRREQITNFEGLN----------GAPAWSPDGSKLAFVLSKD-------------------------------------- 264 (430)
T ss_pred CCEEEccCCCCCc----------CCeEECCCCCEEEEEEccC--------------------------------------
Confidence 6666665543322 5799999999999976432
Q ss_pred CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc
Q 003886 268 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (789)
Q Consensus 268 ~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (789)
+..+||++|+++++.+++ +........+.|||||+. |+|++++.+ ..+||.+++
T Consensus 265 ---g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~~spDg~~----i~f~s~~~g------------~~~iy~~d~----- 318 (430)
T PRK00178 265 ---GNPEIYVMDLASRQLSRV--TNHPAIDTEPFWGKDGRT----LYFTSDRGG------------KPQIYKVNV----- 318 (430)
T ss_pred ---CCceEEEEECCCCCeEEc--ccCCCCcCCeEECCCCCE----EEEEECCCC------------CceEEEEEC-----
Confidence 236899999999999888 444445567899999999 999985332 237999998
Q ss_pred hhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEE
Q 003886 348 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~ 427 (789)
.+++.++++........|.|||||++|+|.+... +..+|+++|+.+++.+.++....
T Consensus 319 ------------~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~--------~~~~l~~~dl~tg~~~~lt~~~~--- 375 (430)
T PRK00178 319 ------------NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQD--------GNFHVAAQDLQRGSVRILTDTSL--- 375 (430)
T ss_pred ------------CCCCEEEeecCCCCccceEECCCCCEEEEEEccC--------CceEEEEEECCCCCEEEccCCCC---
Confidence 6777888876555567899999999999998654 23579999998876655443210
Q ss_pred eeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeee
Q 003886 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTL 497 (789)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~ 497 (789)
...+.|+|||+.|+|++...+...||.++++++..+++....+....+.|++
T Consensus 376 ------------------~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 376 ------------------DESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred ------------------CCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCccCC
Confidence 1245899999999999988888899999997766667764444333344443
|
|
| >KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-23 Score=216.49 Aligned_cols=265 Identities=20% Similarity=0.238 Sum_probs=202.6
Q ss_pred cCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhhccccCceeeEeeecccccceeecCCCeeEE
Q 003886 498 DGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFE 577 (789)
Q Consensus 498 dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~ 577 (789)
+...+.|..+|+.+|+.||.+|+..+.....+ ..++...+ ..++...+...++ .+.+.||..++
T Consensus 392 ~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~v-f~e~~~~l--------pg~~~s~y~~~r~-------~~~SkDGt~VP 455 (712)
T KOG2237|consen 392 KSSTIRFQFSSFLTPGSIYDYDLANGKPEPSV-FREITVVL--------PGFDASDYVVERI-------EVSSKDGTKVP 455 (712)
T ss_pred CCceEEEEEeccCCCCeEEEeeccCCCCCCcc-eeeecccc--------CcccccceEEEEE-------EEecCCCCccc
Confidence 45789999999999999999999866411111 12222111 1122223344444 56788999999
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHH
Q 003886 578 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT 657 (789)
Q Consensus 578 ~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~ 657 (789)
..++.-+..+..++.|++++.||+.+......|...-..|..+|++....|.||++++|+.|++......-...++|+++
T Consensus 456 M~Iv~kk~~k~dg~~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia 535 (712)
T KOG2237|consen 456 MFIVYKKDIKLDGSKPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIA 535 (712)
T ss_pred eEEEEechhhhcCCCceEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHH
Confidence 99988666666779999999999888766667776656667799999999999999999999988766666667999999
Q ss_pred HHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCC
Q 003886 658 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTES 737 (789)
Q Consensus 658 ~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (789)
+++||+++++..++++++.|+|.||.++..++.++|++|+|+|+..|+.|+...+..+..+-|.. .++. +.
T Consensus 536 ~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt~s--d~ee-----~g-- 606 (712)
T KOG2237|consen 536 CAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLTTS--DYEE-----WG-- 606 (712)
T ss_pred HHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccchh--hhcc-----cC--
Confidence 99999999999999999999999999999999999999999999999999887776666666542 1111 11
Q ss_pred CChhhHHHHHhcCccccCCCCC----CC-EEEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 738 PSVEDLTRFHSKSPISHISKVK----TP-TIFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 738 ~~~~~~~~~~~~sp~~~~~~i~----~P-~Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
..++.+.+..++|+..+++++ .| +||..+.+|.+|++.++.++.++||.+
T Consensus 607 -~p~~~~~~~~i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre~ 661 (712)
T KOG2237|consen 607 -NPEDFEDLIKISPYSPVDNIKKQVQYPSMLVTTADHDDRVGPLESLKWVAKLREA 661 (712)
T ss_pred -ChhhhhhhheecccCccCCCchhccCcceEEeeccCCCcccccchHHHHHHHHHH
Confidence 123444555555555555443 56 899999999999999999999988753
|
|
| >COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-22 Score=213.44 Aligned_cols=305 Identities=17% Similarity=0.206 Sum_probs=230.7
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC-CCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccCCC
Q 003886 448 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANK 526 (789)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~ 526 (789)
.+.+.+| +++...-.+-...+...+..+-..+.|.-.. +.......+.+|+.+++..++.++|+.+++.++.+.+ .
T Consensus 301 ~v~tt~~--~~va~~l~nv~~~l~v~~~~g~~~~~v~l~~~ga~~~~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~e-L 377 (648)
T COG1505 301 QVVTTKD--KLVAGTLDNVSGRLEVYDLKGERIEEVELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYRLDLFGGE-L 377 (648)
T ss_pred eeEEEcC--eEEeeeehhccceEEEeccCceEeeecccCCccceeeccCCCCCcEEEEEeecccCCCceEEEecCCce-e
Confidence 3445544 3444443333335666666443444443322 2222223445788999999999999999999987654 1
Q ss_pred ceeeeeccCCCCCCCchhhhhccccCceeeEeeecccccceeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC
Q 003886 527 GTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS 606 (789)
Q Consensus 527 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~ 606 (789)
. .|.+++ ..++..++++.+. ..++.||+.|+.+++. ++.+.. +.|++|+.|||..-..
T Consensus 378 e-----~ik~~p--------~~FDa~~~~veQ~-------~atSkDGT~IPYFiv~-K~~~~d-~~pTll~aYGGF~vsl 435 (648)
T COG1505 378 E-----VIREQP--------VQFDADNYEVEQF-------FATSKDGTRIPYFIVR-KGAKKD-ENPTLLYAYGGFNISL 435 (648)
T ss_pred h-----hhhhcc--------CCcCccCceEEEE-------EEEcCCCccccEEEEe-cCCcCC-CCceEEEecccccccc
Confidence 1 111111 1234445555554 5688999999999998 776666 8999999999988777
Q ss_pred chhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHH
Q 003886 607 LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT 686 (789)
Q Consensus 607 ~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~ 686 (789)
.+.|......+.++|.+.+..|.||.+.||.+|+++....-...-++|..++++.|+++++..+++++|.|.|-||.++.
T Consensus 436 tP~fs~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg 515 (648)
T COG1505 436 TPRFSGSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVG 515 (648)
T ss_pred CCccchhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEE
Confidence 78888877889999999999999999999999998765555555689999999999999999999999999999999999
Q ss_pred HHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCC-CC-CCEEE
Q 003886 687 HLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK-VK-TPTIF 764 (789)
Q Consensus 687 ~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~-i~-~P~Li 764 (789)
.++.++|+.|.|+|+..|+.||..+.....-..|. ..|......++.....++||+.+++. .+ .|+||
T Consensus 516 ~alTQrPelfgA~v~evPllDMlRYh~l~aG~sW~----------~EYG~Pd~P~d~~~l~~YSPy~nl~~g~kYP~~LI 585 (648)
T COG1505 516 AALTQRPELFGAAVCEVPLLDMLRYHLLTAGSSWI----------AEYGNPDDPEDRAFLLAYSPYHNLKPGQKYPPTLI 585 (648)
T ss_pred eeeccChhhhCceeeccchhhhhhhcccccchhhH----------hhcCCCCCHHHHHHHHhcCchhcCCccccCCCeEE
Confidence 99999999999999999999998775444333332 33444445677788889999999875 44 56999
Q ss_pred EEeCCCCCCChHHHHHHHHHCCC
Q 003886 765 LLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 765 i~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
-.+..|.+|+|.|+++++.+|+.
T Consensus 586 TTs~~DDRVHPaHarKfaa~L~e 608 (648)
T COG1505 586 TTSLHDDRVHPAHARKFAAKLQE 608 (648)
T ss_pred EcccccccccchHHHHHHHHHHh
Confidence 99999999999999999999875
|
|
| >PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-25 Score=221.97 Aligned_cols=169 Identities=33% Similarity=0.539 Sum_probs=140.1
Q ss_pred hhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHH
Q 003886 609 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHL 688 (789)
Q Consensus 609 ~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~ 688 (789)
+|....++|+++||+|+.+|+||++|+|.++.....+.++..+++|+.++++++++++.+|++||+|+|+|+||++++++
T Consensus 2 ~f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~ 81 (213)
T PF00326_consen 2 SFNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLA 81 (213)
T ss_dssp --SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHH
T ss_pred eeeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchh
Confidence 35567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCC--CCCCEEEEE
Q 003886 689 IGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISK--VKTPTIFLL 766 (789)
Q Consensus 689 ~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~--i~~P~Lii~ 766 (789)
+.++|++|+++|+.+|+.++..+....+. +....... + .. .+...+.|...+|+..+.+ +++|+||+|
T Consensus 82 ~~~~~~~f~a~v~~~g~~d~~~~~~~~~~--~~~~~~~~------~-~~-~~~~~~~~~~~s~~~~~~~~~~~~P~li~h 151 (213)
T PF00326_consen 82 ATQHPDRFKAAVAGAGVSDLFSYYGTTDI--YTKAEYLE------Y-GD-PWDNPEFYRELSPISPADNVQIKPPVLIIH 151 (213)
T ss_dssp HHHTCCGSSEEEEESE-SSTTCSBHHTCC--HHHGHHHH------H-SS-TTTSHHHHHHHHHGGGGGGCGGGSEEEEEE
T ss_pred hcccceeeeeeeccceecchhcccccccc--cccccccc------c-Cc-cchhhhhhhhhccccccccccCCCCEEEEc
Confidence 99999999999999999998776554433 11100000 0 11 2235667888889988888 899999999
Q ss_pred eCCCCCCChHHHHHHHHHCCC
Q 003886 767 GAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 767 G~~D~~vp~~~~~~l~~~l~~ 787 (789)
|++|.+||++++.+++++|++
T Consensus 152 G~~D~~Vp~~~s~~~~~~L~~ 172 (213)
T PF00326_consen 152 GENDPRVPPSQSLRLYNALRK 172 (213)
T ss_dssp ETTBSSSTTHHHHHHHHHHHH
T ss_pred cCCCCccCHHHHHHHHHHHHh
Confidence 999999999999999999874
|
; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B .... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.90 E-value=9e-23 Score=220.04 Aligned_cols=330 Identities=16% Similarity=0.173 Sum_probs=214.9
Q ss_pred CCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003886 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (789)
Q Consensus 105 spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (789)
||||+.+.+..+....-.......+|++++.+ ++..+++... .....+.|||||++|||+++.+ +|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~--~~~~~l~~~~-----~~~~~~~~sP~g~~~~~v~~~n-----ly~~ 68 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIET--GEITPLTPPP-----PKLQDAKWSPDGKYIAFVRDNN-----LYLR 68 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTT--TEEEESS-EE-----TTBSEEEE-SSSTEEEEEETTE-----EEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCC--CceEECcCCc-----cccccceeecCCCeeEEEecCc-----eEEE
Confidence 79999999977755434445667888988744 3445554331 4578999999999999999875 8888
Q ss_pred e-cCCceeEEEecC-----CCccccccCCC---cccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCC
Q 003886 185 W-SQSQLEKEFHVP-----QTVHGSVYADG---WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 255 (789)
Q Consensus 185 ~-~~~~~~~~~~~~-----~~~~g~v~~d~---~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (789)
. .+++..+++... .+..++||.++ ....+.|||||++|||...+...........+.......+....+
T Consensus 69 ~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~-- 146 (353)
T PF00930_consen 69 DLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESI-- 146 (353)
T ss_dssp SSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEE--
T ss_pred ECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCccccc--
Confidence 7 566667777532 23344566554 346899999999999998876543222111111111000000000
Q ss_pred cceeeCCcccccCCccCceEEEEEccCCceEeccCC----CCCCccceEEEeeCCCCCccEEEEEe-ecCCceeeeeeee
Q 003886 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI----PKSLSVGQVVWAPLNEGLHQYLVFVG-WSSETRKLGIKYC 330 (789)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~----~~~~~~~~~~wSPDg~~~~~~l~f~~-~~~~~~~~g~~~~ 330 (789)
.| |.-|.. .....|+++|+++++...+... +.+.....+.|++|++. |++.- ++..
T Consensus 147 --~Y-Pk~G~~---np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~----l~~~~~nR~q--------- 207 (353)
T PF00930_consen 147 --RY-PKAGDP---NPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKR----LWVQWLNRDQ--------- 207 (353)
T ss_dssp --E---BTTS------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEE----EEEEEEETTS---------
T ss_pred --cc-CCCCCc---CCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcE----EEEEEcccCC---------
Confidence 01 111111 1345799999999987655311 23446779999999996 66543 3322
Q ss_pred ccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecC----CCC-CccCcceec-CCCCEEEEEecCCCCCCCCccccc
Q 003886 331 YNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT----ESI-SSAFFPRFS-PDGKFLVFLSAKSSVDSGAHSATD 404 (789)
Q Consensus 331 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt----~~~-~~~~~p~~S-pDG~~la~~s~~~~~~~g~~~~~~ 404 (789)
+...|+.+|+ .++..+.+. ... .....+.|. +||..+++++.++ +..
T Consensus 208 --~~~~l~~~d~-----------------~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~--------G~~ 260 (353)
T PF00930_consen 208 --NRLDLVLCDA-----------------STGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD--------GYR 260 (353)
T ss_dssp --TEEEEEEEEE-----------------CTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT--------SSE
T ss_pred --CEEEEEEEEC-----------------CCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC--------CCc
Confidence 2346888887 445443332 111 123455665 9999999999865 467
Q ss_pred eeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe--CCeEEEEEEECC-CCcEE
Q 003886 405 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--GSSQVIISVNVS-SGELL 481 (789)
Q Consensus 405 ~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~--~~~~~l~~~dl~-tg~~~ 481 (789)
+|++++..++..+++|.+..+|..+ ..|+++++.|||++.. ....+||+++++ +|+++
T Consensus 261 hly~~~~~~~~~~~lT~G~~~V~~i-------------------~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~ 321 (353)
T PF00930_consen 261 HLYLYDLDGGKPRQLTSGDWEVTSI-------------------LGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPK 321 (353)
T ss_dssp EEEEEETTSSEEEESS-SSS-EEEE-------------------EEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEE
T ss_pred EEEEEcccccceeccccCceeeccc-------------------ceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeE
Confidence 9999999998888899887776543 3688999999999986 357899999999 99999
Q ss_pred EecCCCCCceeEEeeecCCEEEEEEeCCCCCC
Q 003886 482 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVP 513 (789)
Q Consensus 482 ~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~ 513 (789)
+||...+......||++|++++..+++++.|+
T Consensus 322 ~LT~~~~~~~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 322 CLTCEDGDHYSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp ESSTTSSTTEEEEE-TTSSEEEEEEESSSSCE
T ss_pred eccCCCCCceEEEECCCCCEEEEEEcCCCCCC
Confidence 99998875546799999999999999999985
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-22 Score=218.79 Aligned_cols=271 Identities=13% Similarity=0.153 Sum_probs=186.4
Q ss_pred HHHHHHhhcCccccceEEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeC
Q 003886 83 SKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPS 162 (789)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~S 162 (789)
-.+|+.++..+.+.. ++|+|+....+ +.....||+++. ++.+.+.++.+. ..+..|+||
T Consensus 154 d~i~~~ltg~~g~f~-----------~ria~v~~~~~---~~~~~~i~i~d~--dg~~~~~lt~~~-----~~v~~p~wS 212 (429)
T PRK01742 154 DEVFEKLTAIRGAFR-----------TRIAYVVQKNG---GSQPYEVRVADY--DGFNQFIVNRSS-----QPLMSPAWS 212 (429)
T ss_pred HHHHHHHcCCCCccC-----------CEEEEEEEEcC---CCceEEEEEECC--CCCCceEeccCC-----CccccceEc
Confidence 345555555544333 57778876543 234578999886 344555666544 347899999
Q ss_pred CCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCC
Q 003886 163 PSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 241 (789)
Q Consensus 163 PdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~ 241 (789)
|||++|||++..+ +..+++..+ .+++.+++....... ..++|||||++|+|.....
T Consensus 213 PDG~~la~~s~~~-~~~~i~i~dl~tg~~~~l~~~~g~~----------~~~~wSPDG~~La~~~~~~------------ 269 (429)
T PRK01742 213 PDGSKLAYVSFEN-KKSQLVVHDLRSGARKVVASFRGHN----------GAPAFSPDGSRLAFASSKD------------ 269 (429)
T ss_pred CCCCEEEEEEecC-CCcEEEEEeCCCCceEEEecCCCcc----------CceeECCCCCEEEEEEecC------------
Confidence 9999999998754 456777766 556555555444333 5789999999999976432
Q ss_pred CCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCC
Q 003886 242 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 321 (789)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~ 321 (789)
+..+||++|+++++.+++ +........+.|||||+. |+|++++.+
T Consensus 270 -----------------------------g~~~Iy~~d~~~~~~~~l--t~~~~~~~~~~wSpDG~~----i~f~s~~~g 314 (429)
T PRK01742 270 -----------------------------GVLNIYVMGANGGTPSQL--TSGAGNNTEPSWSPDGQS----ILFTSDRSG 314 (429)
T ss_pred -----------------------------CcEEEEEEECCCCCeEee--ccCCCCcCCEEECCCCCE----EEEEECCCC
Confidence 235799999999999888 444556678999999999 999985332
Q ss_pred ceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCcc
Q 003886 322 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401 (789)
Q Consensus 322 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~ 401 (789)
..+||.++. .++..+.++. .+ ..+.|||||++|++.+..
T Consensus 315 ------------~~~I~~~~~-----------------~~~~~~~l~~-~~--~~~~~SpDG~~ia~~~~~--------- 353 (429)
T PRK01742 315 ------------SPQVYRMSA-----------------SGGGASLVGG-RG--YSAQISADGKTLVMINGD--------- 353 (429)
T ss_pred ------------CceEEEEEC-----------------CCCCeEEecC-CC--CCccCCCCCCEEEEEcCC---------
Confidence 237999987 5555666643 22 468999999999997642
Q ss_pred ccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003886 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (789)
Q Consensus 402 ~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~ 481 (789)
+++++|+.++..+.++... ....+.|+|||+.|++.+..++...++.++.+++..+
T Consensus 354 ---~i~~~Dl~~g~~~~lt~~~---------------------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~ 409 (429)
T PRK01742 354 ---NVVKQDLTSGSTEVLSSTF---------------------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA 409 (429)
T ss_pred ---CEEEEECCCCCeEEecCCC---------------------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence 3888998876554332211 1135679999999999887666666777787677777
Q ss_pred EecCCCCCceeEEeee
Q 003886 482 RITPAESNFSWSLLTL 497 (789)
Q Consensus 482 ~lt~~~~~~~~~~~s~ 497 (789)
+++...+....+.|+|
T Consensus 410 ~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 410 RLPGSDGQVKFPAWSP 425 (429)
T ss_pred EccCCCCCCCCcccCC
Confidence 7865444344455554
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.2e-22 Score=218.80 Aligned_cols=245 Identities=13% Similarity=0.118 Sum_probs=183.7
Q ss_pred CCCeEEEEecCCCC---CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCC
Q 003886 164 SGSKLLVVRNPENE---SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 239 (789)
Q Consensus 164 dG~~la~~~~~~~~---~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 239 (789)
-..+|||+++..+. ..++|.++ ++...++++.....+ ..++|||||++|+|++...
T Consensus 164 f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v----------~~p~wSpDG~~lay~s~~~---------- 223 (435)
T PRK05137 164 FDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLV----------LTPRFSPNRQEITYMSYAN---------- 223 (435)
T ss_pred CCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCe----------EeeEECCCCCEEEEEEecC----------
Confidence 35689999875432 45777777 445556666543333 7899999999999987542
Q ss_pred CCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeec
Q 003886 240 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (789)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~ 319 (789)
+..+||++|+.+|+.+++. ........+.|||||+. |+|+...
T Consensus 224 -------------------------------g~~~i~~~dl~~g~~~~l~--~~~g~~~~~~~SPDG~~----la~~~~~ 266 (435)
T PRK05137 224 -------------------------------GRPRVYLLDLETGQRELVG--NFPGMTFAPRFSPDGRK----VVMSLSQ 266 (435)
T ss_pred -------------------------------CCCEEEEEECCCCcEEEee--cCCCcccCcEECCCCCE----EEEEEec
Confidence 3478999999999988883 33334568899999999 9998742
Q ss_pred CCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCC
Q 003886 320 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 399 (789)
Q Consensus 320 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~ 399 (789)
. ...+||++|+ +++..++|+.+.+....|.|||||++|+|.+.+.
T Consensus 267 ~------------g~~~Iy~~d~-----------------~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~------ 311 (435)
T PRK05137 267 G------------GNTDIYTMDL-----------------RSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRS------ 311 (435)
T ss_pred C------------CCceEEEEEC-----------------CCCceEEccCCCCccCceeEcCCCCEEEEEECCC------
Confidence 2 2347999998 7888899998877788899999999999998764
Q ss_pred ccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003886 400 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (789)
Q Consensus 400 ~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~ 479 (789)
+..+||++|+.++..+.++... .....+.|+|||+.|+|.....+...|+.+|++++.
T Consensus 312 --g~~~Iy~~d~~g~~~~~lt~~~--------------------~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~ 369 (435)
T PRK05137 312 --GSPQLYVMNADGSNPRRISFGG--------------------GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG 369 (435)
T ss_pred --CCCeEEEEECCCCCeEEeecCC--------------------CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence 3458999998876554443211 012356899999999998876677889999998888
Q ss_pred EEEecCCCCCceeEEeeecCCEEEEEEeCCCCC--CeEEEEeeccc
Q 003886 480 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDV--PQVKYGYFVDK 523 (789)
Q Consensus 480 ~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p--~~i~~~~~~~~ 523 (789)
.+.++... ......|++||+.|+|+....... ..||++++.++
T Consensus 370 ~~~lt~~~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 370 ERILTSGF-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred eEeccCCC-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 77777654 344578999999999988765543 57999887654
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=214.45 Aligned_cols=252 Identities=15% Similarity=0.156 Sum_probs=179.7
Q ss_pred EEEeCCCCCeEEEEecCCC-----CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCE--EEEEeecC
Q 003886 158 AVVPSPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL--IAYVAEEP 229 (789)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~-----~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~--la~~~~~~ 229 (789)
.+.++ +++|||+....+ ....+|+++ ++++.++++...... ..+.|||||++ ++|++...
T Consensus 141 ~~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~~----------~sP~wSPDG~~~~~~y~S~~~ 208 (428)
T PRK01029 141 VPGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSLS----------ITPTWMHIGSGFPYLYVSYKL 208 (428)
T ss_pred CCccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCCc----------ccceEccCCCceEEEEEEccC
Confidence 34555 999999986532 145788888 566777777643333 68999999998 45565543
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCC
Q 003886 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 309 (789)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~ 309 (789)
+.++||+.++++|+.+++ +........+.|||||++
T Consensus 209 -----------------------------------------g~~~I~~~~l~~g~~~~l--t~~~g~~~~p~wSPDG~~- 244 (428)
T PRK01029 209 -----------------------------------------GVPKIFLGSLENPAGKKI--LALQGNQLMPTFSPRKKL- 244 (428)
T ss_pred -----------------------------------------CCceEEEEECCCCCceEe--ecCCCCccceEECCCCCE-
Confidence 347999999999999888 344444567999999999
Q ss_pred ccEEEEEeecCCceeeeeeeeccCCcceEEE--ecccccchhhhhhhhcCCCCCCCeeecCCCC-CccCcceecCCCCEE
Q 003886 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAV--RVSLYKSEASELELKESSSEDLPVVNLTESI-SSAFFPRFSPDGKFL 386 (789)
Q Consensus 310 ~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~-~~~~~p~~SpDG~~l 386 (789)
|+|++...+ ..++|.. ++.. ..++..++|+... +....|+|||||++|
T Consensus 245 ---Laf~s~~~g------------~~di~~~~~~~~~--------------g~~g~~~~lt~~~~~~~~~p~wSPDG~~L 295 (428)
T PRK01029 245 ---LAFISDRYG------------NPDLFIQSFSLET--------------GAIGKPRRLLNEAFGTQGNPSFSPDGTRL 295 (428)
T ss_pred ---EEEEECCCC------------CcceeEEEeeccc--------------CCCCcceEeecCCCCCcCCeEECCCCCEE
Confidence 999984322 2256664 4410 0235677888653 456789999999999
Q ss_pred EEEecCCCCCCCCccccceeEEeecCCCC--CCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe
Q 003886 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNG--NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 464 (789)
Q Consensus 387 a~~s~~~~~~~g~~~~~~~L~~~d~~~~~--~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~ 464 (789)
+|.+.++ +..+||++++..++ .+.++... .....+.|||||+.|+|....
T Consensus 296 af~s~~~--------g~~~ly~~~~~~~g~~~~~lt~~~--------------------~~~~~p~wSPDG~~Laf~~~~ 347 (428)
T PRK01029 296 VFVSNKD--------GRPRIYIMQIDPEGQSPRLLTKKY--------------------RNSSCPAWSPDGKKIAFCSVI 347 (428)
T ss_pred EEEECCC--------CCceEEEEECcccccceEEeccCC--------------------CCccceeECCCCCEEEEEEcC
Confidence 9998764 24579999886422 22222110 012467899999999999877
Q ss_pred CCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 465 GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 465 ~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
.+..+|+.+|+++|+.++++..........|++||+.|+++.... ....||+.++.++
T Consensus 348 ~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~-g~~~L~~vdl~~g 405 (428)
T PRK01029 348 KGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNS-NESELYLISLITK 405 (428)
T ss_pred CCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCC-CCceEEEEECCCC
Confidence 777899999999999999987654445578999999999887654 3467888887654
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-21 Score=209.23 Aligned_cols=239 Identities=11% Similarity=0.048 Sum_probs=176.8
Q ss_pred CeEEEEec-CCCCCCeEEEEecCCc-eeEEEecCCCccccccCCCcccceeecCCCCE-EEEEeecCCCCCCCccCCCCC
Q 003886 166 SKLLVVRN-PENESPIQFELWSQSQ-LEKEFHVPQTVHGSVYADGWFEGISWNSDETL-IAYVAEEPSPSKPTFSLGSTK 242 (789)
Q Consensus 166 ~~la~~~~-~~~~~~~~~~i~~~~~-~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~-la~~~~~~~~~~~~~~~~~~~ 242 (789)
.++||+.. ......+++.++.+|. .+.++.. . .. ..+.|||||++ ++|.+...
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~-~-~~---------~~p~wSpDG~~~i~y~s~~~------------- 210 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKG-G-LN---------IFPKWANKEQTAFYYTSYGE------------- 210 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccC-C-Ce---------EeEEECCCCCcEEEEEEccC-------------
Confidence 46666665 3223567888885444 4444443 2 21 68999999997 66665432
Q ss_pred CCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCc
Q 003886 243 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 322 (789)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~ 322 (789)
+.++||++|+.+|+.+++ +........+.|||||++ |+|+....
T Consensus 211 ----------------------------~~~~Iyv~dl~tg~~~~l--t~~~g~~~~~~~SPDG~~----la~~~~~~-- 254 (419)
T PRK04043 211 ----------------------------RKPTLYKYNLYTGKKEKI--ASSQGMLVVSDVSKDGSK----LLLTMAPK-- 254 (419)
T ss_pred ----------------------------CCCEEEEEECCCCcEEEE--ecCCCcEEeeEECCCCCE----EEEEEccC--
Confidence 247899999999999998 444444557889999999 99987432
Q ss_pred eeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccc
Q 003886 323 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 402 (789)
Q Consensus 323 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~ 402 (789)
...+||++|+ +++..++||...+....|.|||||++|+|.+++. +
T Consensus 255 ----------g~~~Iy~~dl-----------------~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~--------g 299 (419)
T PRK04043 255 ----------GQPDIYLYDT-----------------NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRL--------G 299 (419)
T ss_pred ----------CCcEEEEEEC-----------------CCCcEEEcccCCCccCccEECCCCCEEEEEECCC--------C
Confidence 2348999998 7788999998876678899999999999999875 3
Q ss_pred cceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeC------CeEEEEEEECC
Q 003886 403 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG------SSQVIISVNVS 476 (789)
Q Consensus 403 ~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~------~~~~l~~~dl~ 476 (789)
..+||++|+.+++.++++... .....|||||+.|+|..... +..+||.+|++
T Consensus 300 ~~~Iy~~dl~~g~~~rlt~~g----------------------~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~ 357 (419)
T PRK04043 300 YPNIFMKKLNSGSVEQVVFHG----------------------KNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTN 357 (419)
T ss_pred CceEEEEECCCCCeEeCccCC----------------------CcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECC
Confidence 468999999987765444211 01247999999999988654 33689999999
Q ss_pred CCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 477 SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 477 tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
+|+.++||.... ...+.|+|||+.|+|+... ..-..|+.+++.+.
T Consensus 358 ~g~~~~LT~~~~-~~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 358 SDYIRRLTANGV-NQFPRFSSDGGSIMFIKYL-GNQSALGIIRLNYN 402 (419)
T ss_pred CCCeEECCCCCC-cCCeEECCCCCEEEEEEcc-CCcEEEEEEecCCC
Confidence 999999998643 3357899999999998765 44456888887653
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9e-21 Score=209.55 Aligned_cols=241 Identities=17% Similarity=0.157 Sum_probs=178.1
Q ss_pred CeEEEEecCCCC--CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCC
Q 003886 166 SKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK 242 (789)
Q Consensus 166 ~~la~~~~~~~~--~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~ 242 (789)
++|||+....++ ..+++.++ +++..++++...... ..++|||||++|||++...
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~~----------~~p~wSPDG~~la~~s~~~------------- 220 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPL----------MSPAWSPDGSKLAYVTFES------------- 220 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCCce----------eeeEEcCCCCEEEEEEecC-------------
Confidence 789999864322 34677777 444556665543233 6899999999999986432
Q ss_pred CCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCc
Q 003886 243 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 322 (789)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~ 322 (789)
+..+|+++|+.+|+.+.+. ........+.|||||+. |+|+....
T Consensus 221 ----------------------------g~~~i~i~dl~~G~~~~l~--~~~~~~~~~~~SPDG~~----La~~~~~~-- 264 (429)
T PRK03629 221 ----------------------------GRSALVIQTLANGAVRQVA--SFPRHNGAPAFSPDGSK----LAFALSKT-- 264 (429)
T ss_pred ----------------------------CCcEEEEEECCCCCeEEcc--CCCCCcCCeEECCCCCE----EEEEEcCC--
Confidence 3478999999999988883 33334567999999999 99986432
Q ss_pred eeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccc
Q 003886 323 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 402 (789)
Q Consensus 323 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~ 402 (789)
...+||++|+ ++++.++|+.+......|.|||||++|+|.+.+. +
T Consensus 265 ----------g~~~I~~~d~-----------------~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~--------g 309 (429)
T PRK03629 265 ----------GSLNLYVMDL-----------------ASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQA--------G 309 (429)
T ss_pred ----------CCcEEEEEEC-----------------CCCCEEEccCCCCCcCceEECCCCCEEEEEeCCC--------C
Confidence 1236999998 7788899998877788999999999999999764 2
Q ss_pred cceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE
Q 003886 403 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 482 (789)
Q Consensus 403 ~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~ 482 (789)
..+||++|+.++..+.++... .....+.|+|||+.|+|.+...+...||.+|+++|+.+.
T Consensus 310 ~~~Iy~~d~~~g~~~~lt~~~--------------------~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~ 369 (429)
T PRK03629 310 RPQVYKVNINGGAPQRITWEG--------------------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 369 (429)
T ss_pred CceEEEEECCCCCeEEeecCC--------------------CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE
Confidence 458999999876554332110 012356899999999998877777889999999999999
Q ss_pred ecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 483 lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
++.... ...+.|++||+.|++...... ...+++.++.+
T Consensus 370 Lt~~~~-~~~p~~SpDG~~i~~~s~~~~-~~~l~~~~~~G 407 (429)
T PRK03629 370 LTDTFL-DETPSIAPNGTMVIYSSSQGM-GSVLNLVSTDG 407 (429)
T ss_pred eCCCCC-CCCceECCCCCEEEEEEcCCC-ceEEEEEECCC
Confidence 986542 234689999999998886433 34577777643
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=208.72 Aligned_cols=239 Identities=17% Similarity=0.195 Sum_probs=176.8
Q ss_pred CeEEEEecCCCCCCeEEEEecCC-ceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCC
Q 003886 166 SKLLVVRNPENESPIQFELWSQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG 244 (789)
Q Consensus 166 ~~la~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~ 244 (789)
.+|||+.... +..+++.++.+| ..++++.....+ ..++|||||++|+|.+...
T Consensus 164 ~~iayv~~~~-~~~~L~~~D~dG~~~~~l~~~~~~v----------~~p~wSPDG~~la~~s~~~--------------- 217 (427)
T PRK02889 164 TRIAYVIKTG-NRYQLQISDADGQNAQSALSSPEPI----------ISPAWSPDGTKLAYVSFES--------------- 217 (427)
T ss_pred cEEEEEEccC-CccEEEEECCCCCCceEeccCCCCc----------ccceEcCCCCEEEEEEccC---------------
Confidence 6799998543 456777777444 445555433333 6899999999999986532
Q ss_pred CCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCcee
Q 003886 245 SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK 324 (789)
Q Consensus 245 ~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~ 324 (789)
+.++||++|+.+|+.+++. ........++|||||+. |+|+....
T Consensus 218 --------------------------~~~~I~~~dl~~g~~~~l~--~~~g~~~~~~~SPDG~~----la~~~~~~---- 261 (427)
T PRK02889 218 --------------------------KKPVVYVHDLATGRRRVVA--NFKGSNSAPAWSPDGRT----LAVALSRD---- 261 (427)
T ss_pred --------------------------CCcEEEEEECCCCCEEEee--cCCCCccceEECCCCCE----EEEEEccC----
Confidence 3478999999999988883 33334568999999999 99976432
Q ss_pred eeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccc
Q 003886 325 LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 404 (789)
Q Consensus 325 ~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~ 404 (789)
...+||.+|+ +++..++|+.+.+....|.|||||++|+|.+++. +..
T Consensus 262 --------g~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~--------g~~ 308 (427)
T PRK02889 262 --------GNSQIYTVNA-----------------DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRG--------GAP 308 (427)
T ss_pred --------CCceEEEEEC-----------------CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCC--------CCc
Confidence 2347999998 6777889988776778899999999999998764 345
Q ss_pred eeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003886 405 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (789)
Q Consensus 405 ~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt 484 (789)
+||.+++.++..+.++... . ....+.|||||+.|+|.+...+...|+.+|+.+|+.++++
T Consensus 309 ~Iy~~~~~~g~~~~lt~~g-------------~-------~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 309 QIYRMPASGGAAQRVTFTG-------------S-------YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT 368 (427)
T ss_pred EEEEEECCCCceEEEecCC-------------C-------CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc
Confidence 7999998765543322110 0 1235689999999999887777778999999999999998
Q ss_pred CCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 485 PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 485 ~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
..... ..+.|++||+.|+|....... ..++..+..
T Consensus 369 ~~~~~-~~p~~spdg~~l~~~~~~~g~-~~l~~~~~~ 403 (427)
T PRK02889 369 DTTRD-ESPSFAPNGRYILYATQQGGR-SVLAAVSSD 403 (427)
T ss_pred CCCCc-cCceECCCCCEEEEEEecCCC-EEEEEEECC
Confidence 65432 456899999999998876543 567777764
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-20 Score=205.59 Aligned_cols=241 Identities=16% Similarity=0.177 Sum_probs=176.4
Q ss_pred CCeEEEEecCCCC--CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCC
Q 003886 165 GSKLLVVRNPENE--SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 241 (789)
Q Consensus 165 G~~la~~~~~~~~--~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~ 241 (789)
..+|||+....+. ..+++.++ ++.+.+.++...... ..+.|||||++|+|++...
T Consensus 182 ~~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~----------~~p~wSPDG~~La~~s~~~------------ 239 (448)
T PRK04792 182 LTRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPL----------MSPAWSPDGRKLAYVSFEN------------ 239 (448)
T ss_pred cCEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcc----------cCceECCCCCEEEEEEecC------------
Confidence 3678888765422 23566666 344455565544333 6899999999999986542
Q ss_pred CCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCC
Q 003886 242 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 321 (789)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~ 321 (789)
+..+||++|+.+|+.+.+. ........+.|||||+. |+|+....
T Consensus 240 -----------------------------g~~~L~~~dl~tg~~~~lt--~~~g~~~~~~wSPDG~~----La~~~~~~- 283 (448)
T PRK04792 240 -----------------------------RKAEIFVQDIYTQVREKVT--SFPGINGAPRFSPDGKK----LALVLSKD- 283 (448)
T ss_pred -----------------------------CCcEEEEEECCCCCeEEec--CCCCCcCCeeECCCCCE----EEEEEeCC-
Confidence 3468999999999988883 33334457999999999 99987432
Q ss_pred ceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCcc
Q 003886 322 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401 (789)
Q Consensus 322 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~ 401 (789)
...+||++|+ ++++.++|+.+......|+|||||++|+|.+.+.
T Consensus 284 -----------g~~~Iy~~dl-----------------~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~-------- 327 (448)
T PRK04792 284 -----------GQPEIYVVDI-----------------ATKALTRITRHRAIDTEPSWHPDGKSLIFTSERG-------- 327 (448)
T ss_pred -----------CCeEEEEEEC-----------------CCCCeEECccCCCCccceEECCCCCEEEEEECCC--------
Confidence 2347999998 7788899988776778999999999999998664
Q ss_pred ccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003886 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (789)
Q Consensus 402 ~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~ 481 (789)
+..+||++|+.+++.+.++... . ....+.|+|||+.|+|.+...+..+||.+|+++|+.+
T Consensus 328 g~~~Iy~~dl~~g~~~~Lt~~g-----------------~---~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 328 GKPQIYRVNLASGKVSRLTFEG-----------------E---QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ 387 (448)
T ss_pred CCceEEEEECCCCCEEEEecCC-----------------C---CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE
Confidence 3468999999876654332110 0 1124689999999999887777788999999999998
Q ss_pred EecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 482 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 482 ~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
.++....+ ..+.|++||+.|++...... ...+++.+..
T Consensus 388 ~lt~~~~d-~~ps~spdG~~I~~~~~~~g-~~~l~~~~~~ 425 (448)
T PRK04792 388 VLTSTRLD-ESPSVAPNGTMVIYSTTYQG-KQVLAAVSID 425 (448)
T ss_pred EccCCCCC-CCceECCCCCEEEEEEecCC-ceEEEEEECC
Confidence 88865432 23579999999998886543 3467777764
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=201.71 Aligned_cols=254 Identities=16% Similarity=0.196 Sum_probs=181.8
Q ss_pred CceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-c
Q 003886 108 GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-S 186 (789)
Q Consensus 108 g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~ 186 (789)
+.+++|..... +.....||+.+. ++...++++... ..+..|+|||||++|||+...+ +..+++.++ .
T Consensus 155 ~~~~~~~~~~~----~~~~~~l~~~d~--~g~~~~~l~~~~-----~~~~~p~~Spdg~~la~~~~~~-~~~~i~v~d~~ 222 (417)
T TIGR02800 155 STRIAYVSKSG----KSRRYELQVADY--DGANPQTITRSR-----EPILSPAWSPDGQKLAYVSFES-GKPEIYVQDLA 222 (417)
T ss_pred CCEEEEEEEeC----CCCcceEEEEcC--CCCCCEEeecCC-----CceecccCCCCCCEEEEEEcCC-CCcEEEEEECC
Confidence 45677875432 245678888875 444566676543 3477899999999999998665 456777776 4
Q ss_pred CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccc
Q 003886 187 QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET 266 (789)
Q Consensus 187 ~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~ 266 (789)
+++..++....... ..+.|||||++|+|.....
T Consensus 223 ~g~~~~~~~~~~~~----------~~~~~spDg~~l~~~~~~~------------------------------------- 255 (417)
T TIGR02800 223 TGQREKVASFPGMN----------GAPAFSPDGSKLAVSLSKD------------------------------------- 255 (417)
T ss_pred CCCEEEeecCCCCc----------cceEECCCCCEEEEEECCC-------------------------------------
Confidence 55555554433222 5789999999999975432
Q ss_pred cCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEeccccc
Q 003886 267 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 346 (789)
Q Consensus 267 ~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 346 (789)
+..+||++|+.+++.+.+. ........+.|+|||++ |+|++.+.. ..+||.+++
T Consensus 256 ----~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~s~dg~~----l~~~s~~~g------------~~~iy~~d~---- 309 (417)
T TIGR02800 256 ----GNPDIYVMDLDGKQLTRLT--NGPGIDTEPSWSPDGKS----IAFTSDRGG------------SPQIYMMDA---- 309 (417)
T ss_pred ----CCccEEEEECCCCCEEECC--CCCCCCCCEEECCCCCE----EEEEECCCC------------CceEEEEEC----
Confidence 3468999999999888883 33334457899999999 999885332 237999998
Q ss_pred chhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeE
Q 003886 347 SEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (789)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v 426 (789)
.+++.++|+........|.|||||++|+|..... +..+|+++|+.++..+.++...
T Consensus 310 -------------~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~--------~~~~i~~~d~~~~~~~~l~~~~--- 365 (417)
T TIGR02800 310 -------------DGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREG--------GGFNIAVMDLDGGGERVLTDTG--- 365 (417)
T ss_pred -------------CCCCEEEeecCCCCccCeEECCCCCEEEEEEccC--------CceEEEEEeCCCCCeEEccCCC---
Confidence 6777788887666778999999999999988653 3457999999875543332211
Q ss_pred EeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC
Q 003886 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 488 (789)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~ 488 (789)
....+.|+|||+.|+|....++...++.++.+++..+.++...+
T Consensus 366 ------------------~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g 409 (417)
T TIGR02800 366 ------------------LDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPLGNG 409 (417)
T ss_pred ------------------CCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCCCCC
Confidence 12356799999999999988888888888876666666665433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-20 Score=203.39 Aligned_cols=242 Identities=14% Similarity=0.140 Sum_probs=176.4
Q ss_pred CCeEEEEecCCCC---CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCC
Q 003886 165 GSKLLVVRNPENE---SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGS 240 (789)
Q Consensus 165 G~~la~~~~~~~~---~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~ 240 (789)
+.+|||++...++ ..+++.++ +++..++++.....+ ..++|||||++|+|++...
T Consensus 167 ~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~~~v----------~~p~wSpDg~~la~~s~~~----------- 225 (433)
T PRK04922 167 WTRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSAEPI----------LSPAWSPDGKKLAYVSFER----------- 225 (433)
T ss_pred cceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCCCcc----------ccccCCCCCCEEEEEecCC-----------
Confidence 5679998764322 23455555 344455665543333 6899999999999986532
Q ss_pred CCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecC
Q 003886 241 TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 320 (789)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~ 320 (789)
+..+||++|+.+|+.+.+. ........+.|||||+. |+|+....
T Consensus 226 ------------------------------~~~~l~~~dl~~g~~~~l~--~~~g~~~~~~~SpDG~~----l~~~~s~~ 269 (433)
T PRK04922 226 ------------------------------GRSAIYVQDLATGQRELVA--SFRGINGAPSFSPDGRR----LALTLSRD 269 (433)
T ss_pred ------------------------------CCcEEEEEECCCCCEEEec--cCCCCccCceECCCCCE----EEEEEeCC
Confidence 3478999999999988884 32334457899999999 99987432
Q ss_pred CceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCc
Q 003886 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAH 400 (789)
Q Consensus 321 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~ 400 (789)
...+||++|+ .+++.++|+.+......|+|||||++|+|.+++.
T Consensus 270 ------------g~~~Iy~~d~-----------------~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~------- 313 (433)
T PRK04922 270 ------------GNPEIYVMDL-----------------GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRG------- 313 (433)
T ss_pred ------------CCceEEEEEC-----------------CCCCeEECccCCCCccceEECCCCCEEEEEECCC-------
Confidence 2347999998 7788889988766678899999999999998764
Q ss_pred cccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE
Q 003886 401 SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL 480 (789)
Q Consensus 401 ~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~ 480 (789)
+..+||++|+.+++.+.++... . ....+.|||||+.|+|....++...|+.+|+.+|+.
T Consensus 314 -g~~~iy~~dl~~g~~~~lt~~g-------------~-------~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 314 -GRPQIYRVAASGGSAERLTFQG-------------N-------YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred -CCceEEEEECCCCCeEEeecCC-------------C-------CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 2357999999876554333211 0 123568999999999987666677899999999999
Q ss_pred EEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 481 LRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 481 ~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
+.++..... ....|++||+.+++..... .-..|+..++.+
T Consensus 373 ~~Lt~~~~~-~~p~~spdG~~i~~~s~~~-g~~~L~~~~~~g 412 (433)
T PRK04922 373 RTLTPGSLD-ESPSFAPNGSMVLYATREG-GRGVLAAVSTDG 412 (433)
T ss_pred EECCCCCCC-CCceECCCCCEEEEEEecC-CceEEEEEECCC
Confidence 988866432 3468999999999888763 335688887653
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.2e-20 Score=203.16 Aligned_cols=243 Identities=14% Similarity=0.163 Sum_probs=176.7
Q ss_pred CCCeEEEEecCCCC---CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCC
Q 003886 164 SGSKLLVVRNPENE---SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 239 (789)
Q Consensus 164 dG~~la~~~~~~~~---~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 239 (789)
..++|||++..... ..+++.++ +++..++++...... ..++|||||++|+|++...
T Consensus 161 f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~----------~~p~wSpDG~~la~~s~~~---------- 220 (430)
T PRK00178 161 FSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPI----------LSPRWSPDGKRIAYVSFEQ---------- 220 (430)
T ss_pred ceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCce----------eeeeECCCCCEEEEEEcCC----------
Confidence 45679998754322 23455555 344455555433222 6899999999999986542
Q ss_pred CCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeec
Q 003886 240 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (789)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~ 319 (789)
+.++||++|+++|+.+.+. ........+.|||||+. |+|+...
T Consensus 221 -------------------------------~~~~l~~~~l~~g~~~~l~--~~~g~~~~~~~SpDG~~----la~~~~~ 263 (430)
T PRK00178 221 -------------------------------KRPRIFVQNLDTGRREQIT--NFEGLNGAPAWSPDGSK----LAFVLSK 263 (430)
T ss_pred -------------------------------CCCEEEEEECCCCCEEEcc--CCCCCcCCeEECCCCCE----EEEEEcc
Confidence 3478999999999988883 33334557999999999 9998743
Q ss_pred CCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCC
Q 003886 320 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 399 (789)
Q Consensus 320 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~ 399 (789)
.+ ..+||++|+ ++++.++|+........|.|||||++|+|.+.+.
T Consensus 264 ~g------------~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~------ 308 (430)
T PRK00178 264 DG------------NPEIYVMDL-----------------ASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRG------ 308 (430)
T ss_pred CC------------CceEEEEEC-----------------CCCCeEEcccCCCCcCCeEECCCCCEEEEEECCC------
Confidence 22 247999998 7788889998777788899999999999998764
Q ss_pred ccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003886 400 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (789)
Q Consensus 400 ~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~ 479 (789)
+..+||++|+.+++.+.++... . ....+.|+|||+.|+|.....+...|+.+|+.+|+
T Consensus 309 --g~~~iy~~d~~~g~~~~lt~~~-------------~-------~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 309 --GKPQIYKVNVNGGRAERVTFVG-------------N-------YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred --CCceEEEEECCCCCEEEeecCC-------------C-------CccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 3458999999876654332110 0 11246799999999998876677789999999999
Q ss_pred EEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 480 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 480 ~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
.+.++....+ ....|++||+.++++...... ..|++.+..+
T Consensus 367 ~~~lt~~~~~-~~p~~spdg~~i~~~~~~~g~-~~l~~~~~~g 407 (430)
T PRK00178 367 VRILTDTSLD-ESPSVAPNGTMLIYATRQQGR-GVLMLVSING 407 (430)
T ss_pred EEEccCCCCC-CCceECCCCCEEEEEEecCCc-eEEEEEECCC
Confidence 9999875433 246899999999988765433 4577777643
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-19 Score=194.29 Aligned_cols=238 Identities=18% Similarity=0.198 Sum_probs=179.8
Q ss_pred cccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCc
Q 003886 122 ANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTV 200 (789)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~ 200 (789)
.+.....+|..+- ++...+.++... .....|.|||||++++|+.-..++.+.++.+. ..++..++.......
T Consensus 168 ~~~~~~~l~~~D~--dg~~~~~l~~~~-----~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~ 240 (425)
T COG0823 168 GGPLPYELALGDY--DGYNQQKLTDSG-----SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN 240 (425)
T ss_pred cCCCCceEEEEcc--CCcceeEecccC-----cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc
Confidence 3446667888764 344555665554 34778999999999999987664547788888 677777777754444
Q ss_pred cccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEc
Q 003886 201 HGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI 280 (789)
Q Consensus 201 ~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~ 280 (789)
..++|||||++|+|..... +..+||++|+
T Consensus 241 ----------~~P~fspDG~~l~f~~~rd-----------------------------------------g~~~iy~~dl 269 (425)
T COG0823 241 ----------GAPAFSPDGSKLAFSSSRD-----------------------------------------GSPDIYLMDL 269 (425)
T ss_pred ----------CCccCCCCCCEEEEEECCC-----------------------------------------CCccEEEEcC
Confidence 6899999999999987754 4589999999
Q ss_pred cCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCC
Q 003886 281 NSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 360 (789)
Q Consensus 281 ~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 360 (789)
.++..++| +........+.|||||++ |||++++.+ ...||++++ +
T Consensus 270 ~~~~~~~L--t~~~gi~~~Ps~spdG~~----ivf~Sdr~G------------~p~I~~~~~-----------------~ 314 (425)
T COG0823 270 DGKNLPRL--TNGFGINTSPSWSPDGSK----IVFTSDRGG------------RPQIYLYDL-----------------E 314 (425)
T ss_pred CCCcceec--ccCCccccCccCCCCCCE----EEEEeCCCC------------CcceEEECC-----------------C
Confidence 99998888 455555559999999999 999986543 237999998 7
Q ss_pred CCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCC-CCCcccceeeEEeeeeccCCCCCc
Q 003886 361 DLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG-NFSSLEKIVDVIPVVQCAEGDCFP 439 (789)
Q Consensus 361 ~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~-~~~~t~~~~~v~~~~~~~~~~~f~ 439 (789)
++..+++|...+....|.|||||++|+|.+... +..++...|+.++. .+.++...
T Consensus 315 g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~--------g~~~i~~~~~~~~~~~~~lt~~~---------------- 370 (425)
T COG0823 315 GSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSG--------GQWDIDKNDLASGGKIRILTSTY---------------- 370 (425)
T ss_pred CCceeEeeccCCCCcCccCCCCCCEEEEEeccC--------CceeeEEeccCCCCcEEEccccc----------------
Confidence 888899998887777999999999999999442 22568888887766 33333221
Q ss_pred cccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE
Q 003886 440 GLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 482 (789)
Q Consensus 440 g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~ 482 (789)
....+.|++||+.++|.+...+...|+.+.. +|+..+
T Consensus 371 -----~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~-~g~~~~ 407 (425)
T COG0823 371 -----LNESPSWAPNGRMIMFSSGQGGGSVLSLVSL-DGRVSR 407 (425)
T ss_pred -----cCCCCCcCCCCceEEEeccCCCCceEEEeec-cceeEE
Confidence 1246789999999999988887888888887 444443
|
|
| >PRK13604 luxD acyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-19 Score=182.28 Aligned_cols=207 Identities=13% Similarity=0.091 Sum_probs=138.2
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCC-CCchhhccCCCC
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLG-FGEEALQSLPGK 646 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G-~G~~~~~~~~~~ 646 (789)
....+|..|.||+..|++. ..++.++||+.||.... ...|...+.+|+++||.|+.+|+||+.| .+.++...
T Consensus 14 ~~~~dG~~L~Gwl~~P~~~-~~~~~~~vIi~HGf~~~--~~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~~~---- 86 (307)
T PRK13604 14 ICLENGQSIRVWETLPKEN-SPKKNNTILIASGFARR--MDHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTIDEF---- 86 (307)
T ss_pred EEcCCCCEEEEEEEcCccc-CCCCCCEEEEeCCCCCC--hHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccccC----
Confidence 4556899999999999642 35678999999996654 2347778889999999999999987523 22222111
Q ss_pred CCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhc
Q 003886 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 726 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~ 726 (789)
.......|+.++++|+.++ +.++|+|+|||+||.++..+|.. + .++++|+.+|+.++.......-...+......
T Consensus 87 t~s~g~~Dl~aaid~lk~~---~~~~I~LiG~SmGgava~~~A~~-~-~v~~lI~~sp~~~l~d~l~~~~~~~~~~~p~~ 161 (307)
T PRK13604 87 TMSIGKNSLLTVVDWLNTR---GINNLGLIAASLSARIAYEVINE-I-DLSFLITAVGVVNLRDTLERALGYDYLSLPID 161 (307)
T ss_pred cccccHHHHHHHHHHHHhc---CCCceEEEEECHHHHHHHHHhcC-C-CCCEEEEcCCcccHHHHHHHhhhcccccCccc
Confidence 1122378999999999886 35689999999999998766663 2 49999999999997644332100000000000
Q ss_pred cCccccccCCCCCh--hhHHHHH------hcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 727 GSKGKDSFTESPSV--EDLTRFH------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 727 ~~~~~~~~~~~~~~--~~~~~~~------~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
.....-.+.+.... ....... ..+|+..+++++.|+|+|||++|..||++++.+++++++
T Consensus 162 ~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~ 229 (307)
T PRK13604 162 ELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIR 229 (307)
T ss_pred ccccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhc
Confidence 00000001111110 1111111 234556788899999999999999999999999999886
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-18 Score=190.57 Aligned_cols=232 Identities=17% Similarity=0.164 Sum_probs=161.2
Q ss_pred CCeEEEEecCCCC--CCeEEEEecCC-ceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCC
Q 003886 165 GSKLLVVRNPENE--SPIQFELWSQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 241 (789)
Q Consensus 165 G~~la~~~~~~~~--~~~~~~i~~~~-~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~ 241 (789)
+++|||++...++ ...++..+.+| ..+.++.....+ ..+.|||||++|||++.+.
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~~~v----------~~p~wSPDG~~la~~s~~~------------ 225 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSSQPL----------MSPAWSPDGSKLAYVSFEN------------ 225 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCCCcc----------ccceEcCCCCEEEEEEecC------------
Confidence 6899999865432 23455545344 433333322223 6899999999999987542
Q ss_pred CCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCC
Q 003886 242 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSE 321 (789)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~ 321 (789)
.+++|+++|+.+|+.+.+. ........++|||||+. |+|+....+
T Consensus 226 -----------------------------~~~~i~i~dl~tg~~~~l~--~~~g~~~~~~wSPDG~~----La~~~~~~g 270 (429)
T PRK01742 226 -----------------------------KKSQLVVHDLRSGARKVVA--SFRGHNGAPAFSPDGSR----LAFASSKDG 270 (429)
T ss_pred -----------------------------CCcEEEEEeCCCCceEEEe--cCCCccCceeECCCCCE----EEEEEecCC
Confidence 3478999999999877773 22233457999999999 999874221
Q ss_pred ceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCcc
Q 003886 322 TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401 (789)
Q Consensus 322 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~ 401 (789)
...||.+|+ +++..++|+.+......|.|||||++|+|.+.+.
T Consensus 271 ------------~~~Iy~~d~-----------------~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~-------- 313 (429)
T PRK01742 271 ------------VLNIYVMGA-----------------NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRS-------- 313 (429)
T ss_pred ------------cEEEEEEEC-----------------CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCC--------
Confidence 236999998 7788889998877788999999999999998764
Q ss_pred ccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003886 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (789)
Q Consensus 402 ~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~ 481 (789)
+..+||.++..++..+.++. . . ..+.|+|||+.|++.+. ..++.+|+.+|+.+
T Consensus 314 g~~~I~~~~~~~~~~~~l~~-----------------~-----~-~~~~~SpDG~~ia~~~~----~~i~~~Dl~~g~~~ 366 (429)
T PRK01742 314 GSPQVYRMSASGGGASLVGG-----------------R-----G-YSAQISADGKTLVMING----DNVVKQDLTSGSTE 366 (429)
T ss_pred CCceEEEEECCCCCeEEecC-----------------C-----C-CCccCCCCCCEEEEEcC----CCEEEEECCCCCeE
Confidence 34579988876543321100 0 1 23579999999988754 35788999999988
Q ss_pred EecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEe
Q 003886 482 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 519 (789)
Q Consensus 482 ~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~ 519 (789)
.++.... .....|+|||+.|++.... .....+++.+
T Consensus 367 ~lt~~~~-~~~~~~sPdG~~i~~~s~~-g~~~~l~~~~ 402 (429)
T PRK01742 367 VLSSTFL-DESPSISPNGIMIIYSSTQ-GLGKVLQLVS 402 (429)
T ss_pred EecCCCC-CCCceECCCCCEEEEEEcC-CCceEEEEEE
Confidence 8875432 2346799999998888753 3333344444
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=186.34 Aligned_cols=244 Identities=15% Similarity=0.145 Sum_probs=176.0
Q ss_pred CCCCCeEEEEecCC-CCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCC
Q 003886 162 SPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 239 (789)
Q Consensus 162 SPdG~~la~~~~~~-~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 239 (789)
.+.|.+++|++... ++...++.++ +++..++++...... ..+.|||||++|||+....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~----------~~p~~Spdg~~la~~~~~~---------- 211 (417)
T TIGR02800 152 GAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSREPI----------LSPAWSPDGQKLAYVSFES---------- 211 (417)
T ss_pred CCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCce----------ecccCCCCCCEEEEEEcCC----------
Confidence 45678899998654 3455677666 445566666543223 6789999999999986432
Q ss_pred CCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeec
Q 003886 240 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (789)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~ 319 (789)
+...|+++|+.+|+.+.+. ........+.|+|||+. |+|....
T Consensus 212 -------------------------------~~~~i~v~d~~~g~~~~~~--~~~~~~~~~~~spDg~~----l~~~~~~ 254 (417)
T TIGR02800 212 -------------------------------GKPEIYVQDLATGQREKVA--SFPGMNGAPAFSPDGSK----LAVSLSK 254 (417)
T ss_pred -------------------------------CCcEEEEEECCCCCEEEee--cCCCCccceEECCCCCE----EEEEECC
Confidence 2368999999999877773 33334456899999999 9987632
Q ss_pred CCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCC
Q 003886 320 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 399 (789)
Q Consensus 320 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~ 399 (789)
. ....||.+++ .++..++|+........|.|||||++|+|.+.+.
T Consensus 255 ~------------~~~~i~~~d~-----------------~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~------ 299 (417)
T TIGR02800 255 D------------GNPDIYVMDL-----------------DGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRG------ 299 (417)
T ss_pred C------------CCccEEEEEC-----------------CCCCEEECCCCCCCCCCEEECCCCCEEEEEECCC------
Confidence 2 2347999998 6777888887766667899999999999998764
Q ss_pred ccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003886 400 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (789)
Q Consensus 400 ~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~ 479 (789)
+..+||++|+.+++.+.++... .....+.|+|||+.|+++....+...|+.+|+.++.
T Consensus 300 --g~~~iy~~d~~~~~~~~l~~~~--------------------~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 300 --GSPQIYMMDADGGEVRRLTFRG--------------------GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred --CCceEEEEECCCCCEEEeecCC--------------------CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 2357999998775543322111 012456899999999998877777899999999988
Q ss_pred EEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 480 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 480 ~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
.+.++.... .....|++||+.|++.+..... ..+++.+..
T Consensus 358 ~~~l~~~~~-~~~p~~spdg~~l~~~~~~~~~-~~l~~~~~~ 397 (417)
T TIGR02800 358 ERVLTDTGL-DESPSFAPNGRMILYATTRGGR-GVLGLVSTD 397 (417)
T ss_pred eEEccCCCC-CCCceECCCCCEEEEEEeCCCc-EEEEEEECC
Confidence 888775433 2345899999999998876554 456666543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK05077 frsA fermentation/respiration switch protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.9e-18 Score=184.05 Aligned_cols=201 Identities=15% Similarity=0.145 Sum_probs=130.7
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
...+|..+.|+++.|+ ..++.|+||+.|| ..+.....|......|+++||+|+++|+|| +|.+.....
T Consensus 174 ~~~~g~~l~g~l~~P~---~~~~~P~Vli~gG-~~~~~~~~~~~~~~~La~~Gy~vl~~D~pG---~G~s~~~~~----- 241 (414)
T PRK05077 174 PIPGGGPITGFLHLPK---GDGPFPTVLVCGG-LDSLQTDYYRLFRDYLAPRGIAMLTIDMPS---VGFSSKWKL----- 241 (414)
T ss_pred EcCCCcEEEEEEEECC---CCCCccEEEEeCC-cccchhhhHHHHHHHHHhCCCEEEEECCCC---CCCCCCCCc-----
Confidence 3456778999999997 3467888876555 443223456666788999999999999998 343321111
Q ss_pred cccH-HHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccch-hhhh-cCCCCCcchhhhh
Q 003886 649 SQDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-ALMV-GTTDIPDWCYVES 725 (789)
Q Consensus 649 ~~~~-~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~-~~~~-~~~~~~~~~~~~~ 725 (789)
..+. ....++++++.+.+.+|.+||+++|||+||++++.++..+|++++++|+.+|+.+. .... .....+.. +...
T Consensus 242 ~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~~~~p~~-~~~~ 320 (414)
T PRK05077 242 TQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQQQVPEM-YLDV 320 (414)
T ss_pred cccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhhhhchHH-HHHH
Confidence 1122 23357889999888899999999999999999999999889999999999988641 1100 00001110 1111
Q ss_pred ccCccccccCCCC--Chh-hHHHHHhcCcc--cc-CCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 726 YGSKGKDSFTESP--SVE-DLTRFHSKSPI--SH-ISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 726 ~~~~~~~~~~~~~--~~~-~~~~~~~~sp~--~~-~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
+.. . ++.+ ..+ ....+..++.. .. ..++++|+|++||++|.+||++++..+.+..++
T Consensus 321 la~----~-lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~~ 383 (414)
T PRK05077 321 LAS----R-LGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASSSAD 383 (414)
T ss_pred HHH----H-hCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHhCCC
Confidence 100 0 1110 111 11122222211 11 257899999999999999999999988887764
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-17 Score=177.57 Aligned_cols=205 Identities=18% Similarity=0.223 Sum_probs=158.3
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
..+.|||||++|+|...... +.+++|++|+++|+..++
T Consensus 196 ~~p~ws~~~~~~~y~~f~~~----------------------------------------~~~~i~~~~l~~g~~~~i-- 233 (425)
T COG0823 196 LTPAWSPDGKKLAYVSFELG----------------------------------------GCPRIYYLDLNTGKRPVI-- 233 (425)
T ss_pred eccccCcCCCceEEEEEecC----------------------------------------CCceEEEEeccCCcccee--
Confidence 57999999999999855431 227899999999988777
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC
Q 003886 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (789)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (789)
.........+.|||||++ |+|+..+. ...+||.+|+ .++...+|+..
T Consensus 234 ~~~~g~~~~P~fspDG~~----l~f~~~rd------------g~~~iy~~dl-----------------~~~~~~~Lt~~ 280 (425)
T COG0823 234 LNFNGNNGAPAFSPDGSK----LAFSSSRD------------GSPDIYLMDL-----------------DGKNLPRLTNG 280 (425)
T ss_pred eccCCccCCccCCCCCCE----EEEEECCC------------CCccEEEEcC-----------------CCCcceecccC
Confidence 455556778999999999 99998544 3458999999 67778889999
Q ss_pred CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCc
Q 003886 371 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 450 (789)
Q Consensus 371 ~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ 450 (789)
.+....|.|||||++|+|.+.+. +..+||++|++++..+.+|.... +-..+.
T Consensus 281 ~gi~~~Ps~spdG~~ivf~Sdr~--------G~p~I~~~~~~g~~~~riT~~~~--------------------~~~~p~ 332 (425)
T COG0823 281 FGINTSPSWSPDGSKIVFTSDRG--------GRPQIYLYDLEGSQVTRLTFSGG--------------------GNSNPV 332 (425)
T ss_pred CccccCccCCCCCCEEEEEeCCC--------CCcceEEECCCCCceeEeeccCC--------------------CCcCcc
Confidence 88888999999999999999886 45689999999977765554321 112568
Q ss_pred cccCCCEEEEEEEeCCeEEEEEEECCCCc-EEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEee
Q 003886 451 WLSDGCTMLLSSIWGSSQVIISVNVSSGE-LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (789)
Q Consensus 451 ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~-~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~ 520 (789)
|||||++|+|....++...+...++.++. .+.++.... .....++++|..+.+..... .-+.++...+
T Consensus 333 ~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~-~e~ps~~~ng~~i~~~s~~~-~~~~l~~~s~ 401 (425)
T COG0823 333 WSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYL-NESPSWAPNGRMIMFSSGQG-GGSVLSLVSL 401 (425)
T ss_pred CCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccccc-CCCCCcCCCCceEEEeccCC-CCceEEEeec
Confidence 99999999999866666778888887776 555555443 23467889999999988877 3344555443
|
|
| >PLN02298 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=4e-17 Score=175.42 Aligned_cols=213 Identities=15% Similarity=0.176 Sum_probs=133.2
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
.++..||..+++..+.|.+ .....++||++||.+... ...|......|+++||.|+++|+|| +|.+........
T Consensus 36 ~~~~~dg~~l~~~~~~~~~--~~~~~~~VvllHG~~~~~-~~~~~~~~~~L~~~Gy~V~~~D~rG---hG~S~~~~~~~~ 109 (330)
T PLN02298 36 FFTSPRGLSLFTRSWLPSS--SSPPRALIFMVHGYGNDI-SWTFQSTAIFLAQMGFACFALDLEG---HGRSEGLRAYVP 109 (330)
T ss_pred eEEcCCCCEEEEEEEecCC--CCCCceEEEEEcCCCCCc-ceehhHHHHHHHhCCCEEEEecCCC---CCCCCCccccCC
Confidence 4556689999998887752 234678999999975432 2234455678899999999999998 555431110001
Q ss_pred CCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcch---hh
Q 003886 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC---YV 723 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~---~~ 723 (789)
......+|+.++++++......+..+++|+|||+||.+++.++.++|++++++|+.+|........... ..... +.
T Consensus 110 ~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~-~~~~~~~~~~ 188 (330)
T PLN02298 110 NVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIRPP-WPIPQILTFV 188 (330)
T ss_pred CHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccCCc-hHHHHHHHHH
Confidence 111236788899999877543455689999999999999999999999999999999875432110000 00000 00
Q ss_pred hhccC--------cccc-----------------ccCCCCChhhHHHHHh-c-CccccCCCCCCCEEEEEeCCCCCCChH
Q 003886 724 ESYGS--------KGKD-----------------SFTESPSVEDLTRFHS-K-SPISHISKVKTPTIFLLGAQDLRVPVS 776 (789)
Q Consensus 724 ~~~~~--------~~~~-----------------~~~~~~~~~~~~~~~~-~-sp~~~~~~i~~P~Lii~G~~D~~vp~~ 776 (789)
..+.. .... .+...+.......... . .....+.++++|+||+||++|.+||++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~ivp~~ 268 (330)
T PLN02298 189 ARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDVSIPFIVLHGSADVVTDPD 268 (330)
T ss_pred HHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhcCCCEEEEecCCCCCCCHH
Confidence 00000 0000 0000000000000000 0 012346788999999999999999999
Q ss_pred HHHHHHHHCC
Q 003886 777 NGLQVIYHIP 786 (789)
Q Consensus 777 ~~~~l~~~l~ 786 (789)
.+.++++.++
T Consensus 269 ~~~~l~~~i~ 278 (330)
T PLN02298 269 VSRALYEEAK 278 (330)
T ss_pred HHHHHHHHhc
Confidence 9999998875
|
|
| >PRK10566 esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-17 Score=170.56 Aligned_cols=199 Identities=14% Similarity=0.114 Sum_probs=123.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCC-CchhhccCCCCCC--cccH
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGF-GEEALQSLPGKVG--SQDV 652 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~-G~~~~~~~~~~~~--~~~~ 652 (789)
+..+.+.|.+ ..+++.|+||++||.+.+ ...|....+.|+++||.|+++|+||.+.. +..........|. ....
T Consensus 12 ~~~~~~~p~~-~~~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~~ 88 (249)
T PRK10566 12 IEVLHAFPAG-QRDTPLPTVFFYHGFTSS--KLVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQILLQNM 88 (249)
T ss_pred cceEEEcCCC-CCCCCCCEEEEeCCCCcc--cchHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHHHHHH
Confidence 4455667753 124568999999997664 34566778899999999999999984321 1000000000010 1236
Q ss_pred HHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCcccc
Q 003886 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 732 (789)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (789)
+|+.++++++.+++.+|.+||+++|||+||++++.++.++|+. ++++...+.............+... .. ..
T Consensus 89 ~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~ 160 (249)
T PRK10566 89 QEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWV-KCVASLMGSGYFTSLARTLFPPLIP-----ET--AA 160 (249)
T ss_pred HHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCe-eEEEEeeCcHHHHHHHHHhcccccc-----cc--cc
Confidence 7888889999888888999999999999999999999988764 4443332211111110000000000 00 00
Q ss_pred ccCCCCChhhHHHHHhcCccccCCCC-CCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 733 SFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 733 ~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.. ....+....+...++...+.++ ++|+|++||++|.+||++++.+++++++.
T Consensus 161 ~~--~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~ 214 (249)
T PRK10566 161 QQ--AEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRE 214 (249)
T ss_pred cH--HHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHh
Confidence 00 0000111223344555566776 79999999999999999999999998864
|
|
| >TIGR01840 esterase_phb esterase, PHB depolymerase family | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.4e-17 Score=161.67 Aligned_cols=191 Identities=18% Similarity=0.131 Sum_probs=123.4
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhH---HHHHHHHHCCcEEEEEcCCCCCCCCchh--hccCCCCCCcccH
Q 003886 578 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNYRGSLGFGEEA--LQSLPGKVGSQDV 652 (789)
Q Consensus 578 ~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~---~~~~~la~~Gy~V~~~d~rGs~G~G~~~--~~~~~~~~~~~~~ 652 (789)
+++|.|++. .+++|+||++||+++.. ..+. .....+.+.||.|++||++|+.+.+..+ ........+..+.
T Consensus 1 ~~ly~P~~~--~~~~P~vv~lHG~~~~~--~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~ 76 (212)
T TIGR01840 1 MYVYVPAGL--TGPRALVLALHGCGQTA--SAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEV 76 (212)
T ss_pred CEEEcCCCC--CCCCCEEEEeCCCCCCH--HHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccH
Confidence 367888763 46799999999987652 2232 1334455689999999999865433221 1111112234567
Q ss_pred HHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCcccc
Q 003886 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 732 (789)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (789)
.|+...++++.++..+|++||+|+|+|+||++++.++.++|++|+++++.++....... .. ...+.
T Consensus 77 ~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~-------~~--~~~~~----- 142 (212)
T TIGR01840 77 ESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEAS-------SS--ISATP----- 142 (212)
T ss_pred HHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccc-------cc--hhhHh-----
Confidence 88999999999887799999999999999999999999999999999888875321000 00 00000
Q ss_pred ccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 733 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 733 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.+...........+.... .........|++|+||++|.+||++.+.++++.|+.
T Consensus 143 ~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~ 196 (212)
T TIGR01840 143 QMCTAATAASVCRLVRGM-QSEYNGPTPIMSVVHGDADYTVLPGNADEIRDAMLK 196 (212)
T ss_pred hcCCCCCHHHHHHHHhcc-CCcccCCCCeEEEEEcCCCceeCcchHHHHHHHHHH
Confidence 000001111111111110 111223345578999999999999999999998763
|
This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. |
| >PHA02857 monoglyceride lipase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-16 Score=164.68 Aligned_cols=208 Identities=17% Similarity=0.170 Sum_probs=132.0
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
++.+.||..|.+.++.|. ..+.|+|+++||.+. ....|......|+++||.|+++|+|| +|.+........
T Consensus 4 ~~~~~~g~~l~~~~~~~~----~~~~~~v~llHG~~~--~~~~~~~~~~~l~~~g~~via~D~~G---~G~S~~~~~~~~ 74 (276)
T PHA02857 4 CMFNLDNDYIYCKYWKPI----TYPKALVFISHGAGE--HSGRYEELAENISSLGILVFSHDHIG---HGRSNGEKMMID 74 (276)
T ss_pred eeecCCCCEEEEEeccCC----CCCCEEEEEeCCCcc--ccchHHHHHHHHHhCCCEEEEccCCC---CCCCCCccCCcC
Confidence 456679999999999884 345689999999655 35677788889999999999999998 555432111000
Q ss_pred CCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhh-------------hc
Q 003886 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-------------VG 713 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~-------------~~ 713 (789)
.....++|+.+.++++.+. ....+++|+|||+||.+++.++.++|++++++|+.+|..+.... ..
T Consensus 75 ~~~~~~~d~~~~l~~~~~~--~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~~ 152 (276)
T PHA02857 75 DFGVYVRDVVQHVVTIKST--YPGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIFY 152 (276)
T ss_pred CHHHHHHHHHHHHHHHHhh--CCCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHhC
Confidence 1112257777777776654 33468999999999999999999999999999999997542110 00
Q ss_pred CCC-CCcchhhhhccCc--ccccc-------CCCCChhhHHHHHhc--CccccCCCCCCCEEEEEeCCCCCCChHHHHHH
Q 003886 714 TTD-IPDWCYVESYGSK--GKDSF-------TESPSVEDLTRFHSK--SPISHISKVKTPTIFLLGAQDLRVPVSNGLQV 781 (789)
Q Consensus 714 ~~~-~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~~~--sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l 781 (789)
... ...+.. ..+... ....+ ............... .....+.++++|+|++||++|.++|++.+.++
T Consensus 153 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~l 231 (276)
T PHA02857 153 PNKIVGKLCP-ESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTNNEISDVSGAYYF 231 (276)
T ss_pred CCCccCCCCH-hhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCCCCcCChHHHHHH
Confidence 000 000000 000000 00000 000000000000000 11234778999999999999999999999999
Q ss_pred HHHCC
Q 003886 782 IYHIP 786 (789)
Q Consensus 782 ~~~l~ 786 (789)
++.+.
T Consensus 232 ~~~~~ 236 (276)
T PHA02857 232 MQHAN 236 (276)
T ss_pred HHHcc
Confidence 98874
|
|
| >PLN02385 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-16 Score=170.10 Aligned_cols=210 Identities=15% Similarity=0.184 Sum_probs=130.8
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
+.+.+|.++.+..+.|. ..+..|+||++||.+... ...|......|+++||.|+++|+|| +|.+... .+..
T Consensus 66 ~~~~~g~~l~~~~~~p~---~~~~~~~iv~lHG~~~~~-~~~~~~~~~~l~~~g~~v~~~D~~G---~G~S~~~--~~~~ 136 (349)
T PLN02385 66 EVNSRGVEIFSKSWLPE---NSRPKAAVCFCHGYGDTC-TFFFEGIARKIASSGYGVFAMDYPG---FGLSEGL--HGYI 136 (349)
T ss_pred EEcCCCCEEEEEEEecC---CCCCCeEEEEECCCCCcc-chHHHHHHHHHHhCCCEEEEecCCC---CCCCCCC--CCCc
Confidence 44568999999888886 335679999999965531 2234556778999999999999998 5544321 1111
Q ss_pred -C-cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcC-----------
Q 003886 648 -G-SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT----------- 714 (789)
Q Consensus 648 -~-~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~----------- 714 (789)
. ...++|+.+.++.+..+...+..++.|+|||+||++++.++.++|++++++|+.+|..........
T Consensus 137 ~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~~~~~~~~ 216 (349)
T PLN02385 137 PSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLVLQILILL 216 (349)
T ss_pred CCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHHHHHHHHH
Confidence 1 112566677777665543345668999999999999999999999999999999986542110000
Q ss_pred -CCCCcchh------hhh-ccCc--------cccccCCCCCh-hhHHHHHhc-CccccCCCCCCCEEEEEeCCCCCCChH
Q 003886 715 -TDIPDWCY------VES-YGSK--------GKDSFTESPSV-EDLTRFHSK-SPISHISKVKTPTIFLLGAQDLRVPVS 776 (789)
Q Consensus 715 -~~~~~~~~------~~~-~~~~--------~~~~~~~~~~~-~~~~~~~~~-sp~~~~~~i~~P~Lii~G~~D~~vp~~ 776 (789)
...+.+.. ... +... ....+...+.. ...+.+... .....+.++++|+|++||++|.+||++
T Consensus 217 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~~P~Lii~G~~D~vv~~~ 296 (349)
T PLN02385 217 ANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVSLPLLILHGEADKVTDPS 296 (349)
T ss_pred HHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCCCCEEEEEeCCCCccChH
Confidence 00000000 000 0000 00000000000 011111111 112347789999999999999999999
Q ss_pred HHHHHHHHCC
Q 003886 777 NGLQVIYHIP 786 (789)
Q Consensus 777 ~~~~l~~~l~ 786 (789)
.+.++++.+.
T Consensus 297 ~~~~l~~~~~ 306 (349)
T PLN02385 297 VSKFLYEKAS 306 (349)
T ss_pred HHHHHHHHcC
Confidence 9999999874
|
|
| >PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=167.90 Aligned_cols=209 Identities=20% Similarity=0.252 Sum_probs=134.5
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccC---
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL--- 643 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~--- 643 (789)
.|.+.+|..+.|+++.|++ ..++.|+||.+||.+.. ...+. ....++.+||+|+.+|.||.+|...+.....
T Consensus 60 ~f~s~~g~~V~g~l~~P~~--~~~~~Pavv~~hGyg~~--~~~~~-~~~~~a~~G~~vl~~d~rGqg~~~~d~~~~~~~~ 134 (320)
T PF05448_consen 60 SFESFDGSRVYGWLYRPKN--AKGKLPAVVQFHGYGGR--SGDPF-DLLPWAAAGYAVLAMDVRGQGGRSPDYRGSSGGT 134 (320)
T ss_dssp EEEEGGGEEEEEEEEEES---SSSSEEEEEEE--TT----GGGHH-HHHHHHHTT-EEEEE--TTTSSSS-B-SSBSSS-
T ss_pred EEEccCCCEEEEEEEecCC--CCCCcCEEEEecCCCCC--CCCcc-cccccccCCeEEEEecCCCCCCCCCCccccCCCC
Confidence 6777889999999999984 45799999999996553 22222 2346889999999999999765443321110
Q ss_pred -CC--CCCc----------ccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc-cchh
Q 003886 644 -PG--KVGS----------QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL-CNLA 709 (789)
Q Consensus 644 -~~--~~~~----------~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv-~~~~ 709 (789)
.+ ..|. ..+.|+..++++|.+++.+|.+||+++|.|+||.+++.+++..+ +++++++..|. +|+.
T Consensus 135 ~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~~~~~vP~l~d~~ 213 (320)
T PF05448_consen 135 LKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKAAAADVPFLCDFR 213 (320)
T ss_dssp SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SEEEEESESSSSHH
T ss_pred CccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccEEEecCCCccchh
Confidence 01 0111 12589999999999999999999999999999999999999864 79999999885 5555
Q ss_pred hhhcCCC-CCcch-hhhhccCccccccCCCC--ChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHC
Q 003886 710 LMVGTTD-IPDWC-YVESYGSKGKDSFTESP--SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHI 785 (789)
Q Consensus 710 ~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l 785 (789)
..+.... ...+. ....+. .....+ ..+..+.+...+....+..|++|+|+..|-.|..|||......|++|
T Consensus 214 ~~~~~~~~~~~y~~~~~~~~-----~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~gl~D~~cPP~t~fA~yN~i 288 (320)
T PF05448_consen 214 RALELRADEGPYPEIRRYFR-----WRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVGLQDPVCPPSTQFAAYNAI 288 (320)
T ss_dssp HHHHHT--STTTHHHHHHHH-----HHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEETT-SSS-HHHHHHHHCC-
T ss_pred hhhhcCCccccHHHHHHHHh-----ccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEecCCCCCCchhHHHHHhcc
Confidence 4332211 11111 000000 000011 12334556677888889999999999999999999999999999988
Q ss_pred C
Q 003886 786 P 786 (789)
Q Consensus 786 ~ 786 (789)
+
T Consensus 289 ~ 289 (320)
T PF05448_consen 289 P 289 (320)
T ss_dssp -
T ss_pred C
Confidence 6
|
Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F .... |
| >COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.8e-17 Score=154.78 Aligned_cols=210 Identities=17% Similarity=0.241 Sum_probs=145.9
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhcc----
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQS---- 642 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~---- 642 (789)
+|++-+|.+|.||+++|+. ..++.|+||..||..++.+ .| ...-.|+..||+|+.+|.||.++..++....
T Consensus 60 Tf~g~~g~rI~gwlvlP~~--~~~~~P~vV~fhGY~g~~g--~~-~~~l~wa~~Gyavf~MdvRGQg~~~~dt~~~p~~~ 134 (321)
T COG3458 60 TFTGYGGARIKGWLVLPRH--EKGKLPAVVQFHGYGGRGG--EW-HDMLHWAVAGYAVFVMDVRGQGSSSQDTADPPGGP 134 (321)
T ss_pred EEeccCCceEEEEEEeecc--cCCccceEEEEeeccCCCC--Cc-cccccccccceeEEEEecccCCCccccCCCCCCCC
Confidence 7888899999999999984 4489999999999655422 22 2344788999999999999976653311111
Q ss_pred -CCCC--CC----------cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc-h
Q 003886 643 -LPGK--VG----------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN-L 708 (789)
Q Consensus 643 -~~~~--~~----------~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~-~ 708 (789)
.++. .| ..-+.|+..+++.+.+...+|.+||++.|.|.||.+++.+++.. .++|++++..|++. .
T Consensus 135 s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~-~rik~~~~~~Pfl~df 213 (321)
T COG3458 135 SDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALD-PRIKAVVADYPFLSDF 213 (321)
T ss_pred cCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcC-hhhhcccccccccccc
Confidence 1111 01 11267899999999999999999999999999999999999865 48999999999753 2
Q ss_pred hhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 709 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.......... .|.+... +.++. .....+..+.+...+....+.+++.|+|+..|..|++|||......|+++..
T Consensus 214 ~r~i~~~~~~--~ydei~~--y~k~h-~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~vcpPstqFA~yN~l~~ 287 (321)
T COG3458 214 PRAIELATEG--PYDEIQT--YFKRH-DPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMDPVCPPSTQFAAYNALTT 287 (321)
T ss_pred hhheeecccC--cHHHHHH--HHHhc-CchHHHHHHHHhhhhhhhHHHhhccceEEeecccCCCCCChhhHHHhhcccC
Confidence 2221110000 0111000 00000 1111233445555566667889999999999999999999999999999853
|
|
| >KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-16 Score=151.92 Aligned_cols=179 Identities=17% Similarity=0.253 Sum_probs=131.0
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHH-CCcEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
+...|..+-+..+.|+ ....+++++.||... ...+....+..|.. .++.|+.+||+| +|.+......
T Consensus 41 ~t~rgn~~~~~y~~~~----~~~~~~lly~hGNa~--Dlgq~~~~~~~l~~~ln~nv~~~DYSG---yG~S~G~psE--- 108 (258)
T KOG1552|consen 41 KTSRGNEIVCMYVRPP----EAAHPTLLYSHGNAA--DLGQMVELFKELSIFLNCNVVSYDYSG---YGRSSGKPSE--- 108 (258)
T ss_pred ecCCCCEEEEEEEcCc----cccceEEEEcCCccc--chHHHHHHHHHHhhcccceEEEEeccc---ccccCCCccc---
Confidence 3445677888888885 235799999999522 22222233334443 689999999998 4444322211
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcC-CCCCcchhhhhc
Q 003886 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-TDIPDWCYVESY 726 (789)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~-~~~~~~~~~~~~ 726 (789)
....+|+.++.++|.++.. ..++|+|+|+|+|...++.+|++.| .+|+|+.+|+.+....+.. .....|+
T Consensus 109 -~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~~~~~~~~~----- 179 (258)
T KOG1552|consen 109 -RNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFPDTKTTYCF----- 179 (258)
T ss_pred -ccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhccCcceEEee-----
Confidence 1357999999999999855 7899999999999999999999987 9999999999875444322 1111110
Q ss_pred cCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 727 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
..+..+..++.|+||+|++||++|++||+.++.+||++++++
T Consensus 180 --------------------d~f~~i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~~ 221 (258)
T KOG1552|consen 180 --------------------DAFPNIEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKEK 221 (258)
T ss_pred --------------------ccccccCcceeccCCEEEEecccCceecccccHHHHHhcccc
Confidence 011125678889999999999999999999999999999875
|
|
| >PLN02442 S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.8e-16 Score=162.03 Aligned_cols=197 Identities=15% Similarity=0.155 Sum_probs=125.2
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH---HHHHHHHCCcEEEEEcCCCCC------------CCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSL------------GFG 636 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~Gy~V~~~d~rGs~------------G~G 636 (789)
-|..+...+|.|+. .+.+++|+|+++||++++. ..|.. ..+.++..||+|++||..+.+ ++|
T Consensus 28 l~~~~~~~vy~P~~-~~~~~~Pvv~~lHG~~~~~--~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~~~~~~~~~~~~~~ 104 (283)
T PLN02442 28 LGCSMTFSVYFPPA-SDSGKVPVLYWLSGLTCTD--ENFIQKSGAQRAAAARGIALVAPDTSPRGLNVEGEADSWDFGVG 104 (283)
T ss_pred cCCceEEEEEcCCc-ccCCCCCEEEEecCCCcCh--HHHHHhhhHHHHHhhcCeEEEecCCCCCCCCCCCCccccccCCC
Confidence 45678888999973 3467899999999977643 33322 234667789999999975321 111
Q ss_pred chhh-ccCCCCCC-----cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh
Q 003886 637 EEAL-QSLPGKVG-----SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (789)
Q Consensus 637 ~~~~-~~~~~~~~-----~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~ 710 (789)
.++. +.....++ ....+++...++.... .+|.++++|+|+|+||++++.++.++|++|+++++.+|++++..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~~~ 182 (283)
T PLN02442 105 AGFYLNATQEKWKNWRMYDYVVKELPKLLSDNFD--QLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIANPIN 182 (283)
T ss_pred cceeeccccCCCcccchhhhHHHHHHHHHHHHHH--hcCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCccCccc
Confidence 1110 11111111 1112334334433332 26889999999999999999999999999999999999987432
Q ss_pred hhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChH-HHHHHHHHCCC
Q 003886 711 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVS-NGLQVIYHIPF 787 (789)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~-~~~~l~~~l~~ 787 (789)
.. +.. .. ...+++.+ .+..+.+...+++..+.+.++|+|++||++|..|+.. ++..+++++++
T Consensus 183 ~~-------~~~-~~-----~~~~~g~~-~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~~~~~s~~~~~~l~~ 246 (283)
T PLN02442 183 CP-------WGQ-KA-----FTNYLGSD-KADWEEYDATELVSKFNDVSATILIDQGEADKFLKEQLLPENFEEACKE 246 (283)
T ss_pred Cc-------hhh-HH-----HHHHcCCC-hhhHHHcChhhhhhhccccCCCEEEEECCCCccccccccHHHHHHHHHH
Confidence 10 110 00 11122222 1333444445555666677899999999999999974 57788877753
|
|
| >KOG1455 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-15 Score=150.37 Aligned_cols=213 Identities=17% Similarity=0.213 Sum_probs=143.9
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
.+++.+|..+....+.|.. ..++.-+|+++||.+.. ....|...+..|+..||.|+++|++| +|.+.. +...
T Consensus 31 ~~~n~rG~~lft~~W~p~~--~~~pr~lv~~~HG~g~~-~s~~~~~~a~~l~~~g~~v~a~D~~G---hG~SdG--l~~y 102 (313)
T KOG1455|consen 31 FFTNPRGAKLFTQSWLPLS--GTEPRGLVFLCHGYGEH-SSWRYQSTAKRLAKSGFAVYAIDYEG---HGRSDG--LHAY 102 (313)
T ss_pred eEEcCCCCEeEEEecccCC--CCCCceEEEEEcCCccc-chhhHHHHHHHHHhCCCeEEEeeccC---CCcCCC--Cccc
Confidence 4667789999999999863 23678899999996553 23567778889999999999999998 444431 1222
Q ss_pred CC--cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhh------------
Q 003886 647 VG--SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV------------ 712 (789)
Q Consensus 647 ~~--~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~------------ 712 (789)
.. ..-++|+...++.++.+........+++||||||.+++.++.++|+.+.++|+.+|.+-+..-.
T Consensus 103 i~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~p~v~~~l~~ 182 (313)
T KOG1455|consen 103 VPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPHPPVISILTL 182 (313)
T ss_pred CCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCCcHHHHHHHH
Confidence 22 2236888888888888766667789999999999999999999999999999999987542111
Q ss_pred cCCCCCcchhhhhc-------c--------CccccccCCCCChhhH-HHHHh-cCccccCCCCCCCEEEEEeCCCCCCCh
Q 003886 713 GTTDIPDWCYVESY-------G--------SKGKDSFTESPSVEDL-TRFHS-KSPISHISKVKTPTIFLLGAQDLRVPV 775 (789)
Q Consensus 713 ~~~~~~~~~~~~~~-------~--------~~~~~~~~~~~~~~~~-~~~~~-~sp~~~~~~i~~P~Lii~G~~D~~vp~ 775 (789)
...-+|.|.....- . ...--+|.+.|..... +.++. .....++.+++.|.||+||++|.++.+
T Consensus 183 l~~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtvPflilHG~dD~VTDp 262 (313)
T KOG1455|consen 183 LSKLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTVPFLILHGTDDKVTDP 262 (313)
T ss_pred HHHhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccccccEEEEecCCCcccCc
Confidence 01112333211000 0 0000112222221111 11111 111245788999999999999999999
Q ss_pred HHHHHHHHHCCC
Q 003886 776 SNGLQVIYHIPF 787 (789)
Q Consensus 776 ~~~~~l~~~l~~ 787 (789)
..+++||+....
T Consensus 263 ~~Sk~Lye~A~S 274 (313)
T KOG1455|consen 263 KVSKELYEKASS 274 (313)
T ss_pred HHHHHHHHhccC
Confidence 999999998754
|
|
| >PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate [] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.6e-15 Score=155.78 Aligned_cols=209 Identities=20% Similarity=0.250 Sum_probs=125.3
Q ss_pred cccCceeeEeeecccccceeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEc
Q 003886 549 LSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVN 628 (789)
Q Consensus 549 l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d 628 (789)
+....++.++||+ .|.+|.|+++.|+ ..++.|+||++ ||..+.....+.....+|+.+|++++++|
T Consensus 160 l~~~~i~~v~iP~----------eg~~I~g~LhlP~---~~~p~P~VIv~-gGlDs~qeD~~~l~~~~l~~rGiA~LtvD 225 (411)
T PF06500_consen 160 LSDYPIEEVEIPF----------EGKTIPGYLHLPS---GEKPYPTVIVC-GGLDSLQEDLYRLFRDYLAPRGIAMLTVD 225 (411)
T ss_dssp HSSSEEEEEEEEE----------TTCEEEEEEEESS---SSS-EEEEEEE---TTS-GGGGHHHHHCCCHHCT-EEEEE-
T ss_pred hCCCCcEEEEEee----------CCcEEEEEEEcCC---CCCCCCEEEEe-CCcchhHHHHHHHHHHHHHhCCCEEEEEc
Confidence 3344456666664 3478999999998 56788988876 55554333344444567999999999999
Q ss_pred CCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc-
Q 003886 629 YRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN- 707 (789)
Q Consensus 629 ~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~- 707 (789)
.+| -|.+....+..+. -.-..++++||.+.+++|.+||+++|.|+||+.+.++|..+++|++|+|+..|+++
T Consensus 226 mPG---~G~s~~~~l~~D~----~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~ 298 (411)
T PF06500_consen 226 MPG---QGESPKWPLTQDS----SRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHH 298 (411)
T ss_dssp -TT---SGGGTTT-S-S-C----CHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SC
T ss_pred cCC---CcccccCCCCcCH----HHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhh
Confidence 987 4444322222111 12345789999999999999999999999999999999877889999999988643
Q ss_pred hhh-hhcCCCCCcchhhhhccCccccccCCCC--ChhhH-HHHHhcCcccc--C--CCCCCCEEEEEeCCCCCCChHHHH
Q 003886 708 LAL-MVGTTDIPDWCYVESYGSKGKDSFTESP--SVEDL-TRFHSKSPISH--I--SKVKTPTIFLLGAQDLRVPVSNGL 779 (789)
Q Consensus 708 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~sp~~~--~--~~i~~P~Lii~G~~D~~vp~~~~~ 779 (789)
+.. .......|. .+...+.. .++.. ..+.. .....+|.... + .+.++|+|.+.|++|.++|.+...
T Consensus 299 ~ft~~~~~~~~P~-my~d~LA~-----rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~ 372 (411)
T PF06500_consen 299 FFTDPEWQQRVPD-MYLDVLAS-----RLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSPIEDSR 372 (411)
T ss_dssp GGH-HHHHTTS-H-HHHHHHHH-----HCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS-HHHHH
T ss_pred hhccHHHHhcCCH-HHHHHHHH-----HhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCCHHHHH
Confidence 211 011111221 12222211 11111 12222 33456666543 4 567899999999999999999988
Q ss_pred HHHHH
Q 003886 780 QVIYH 784 (789)
Q Consensus 780 ~l~~~ 784 (789)
-++..
T Consensus 373 lia~~ 377 (411)
T PF06500_consen 373 LIAES 377 (411)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 77654
|
This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C. |
| >PLN02652 hydrolase; alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-14 Score=156.22 Aligned_cols=210 Identities=12% Similarity=0.117 Sum_probs=128.3
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
.++..++..+....+.|. ..++.|+||++||.+.+ ...|......|+++||.|+++|+|| +|.+........
T Consensus 114 ~~~~~~~~~l~~~~~~p~---~~~~~~~Vl~lHG~~~~--~~~~~~~a~~L~~~Gy~V~~~D~rG---hG~S~~~~~~~~ 185 (395)
T PLN02652 114 LFYGARRNALFCRSWAPA---AGEMRGILIIIHGLNEH--SGRYLHFAKQLTSCGFGVYAMDWIG---HGGSDGLHGYVP 185 (395)
T ss_pred EEECCCCCEEEEEEecCC---CCCCceEEEEECCchHH--HHHHHHHHHHHHHCCCEEEEeCCCC---CCCCCCCCCCCc
Confidence 456667788888888885 34567899999996553 4456677888999999999999998 444332111001
Q ss_pred CCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCC---ceeEEEEeCCccchhhhhc---------C
Q 003886 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNLALMVG---------T 714 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~---~~~a~v~~~pv~~~~~~~~---------~ 714 (789)
......+|+.++++++..+ .+..++.|+|||+||.+++.++. +|+ +++++|+.+|...+..... .
T Consensus 186 ~~~~~~~Dl~~~l~~l~~~--~~~~~i~lvGhSmGG~ial~~a~-~p~~~~~v~glVL~sP~l~~~~~~~~~~~~~~l~~ 262 (395)
T PLN02652 186 SLDYVVEDTEAFLEKIRSE--NPGVPCFLFGHSTGGAVVLKAAS-YPSIEDKLEGIVLTSPALRVKPAHPIVGAVAPIFS 262 (395)
T ss_pred CHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHHHHHHHHHHh-ccCcccccceEEEECcccccccchHHHHHHHHHHH
Confidence 1112257888888888755 23457999999999999997765 554 7999999999764321000 0
Q ss_pred CCCCcchhhhh--ccCc------c-ccccC------CCCChhhHHHHHhcC--ccccCCCCCCCEEEEEeCCCCCCChHH
Q 003886 715 TDIPDWCYVES--YGSK------G-KDSFT------ESPSVEDLTRFHSKS--PISHISKVKTPTIFLLGAQDLRVPVSN 777 (789)
Q Consensus 715 ~~~~~~~~~~~--~~~~------~-~~~~~------~~~~~~~~~~~~~~s--p~~~~~~i~~P~Lii~G~~D~~vp~~~ 777 (789)
.-.+.+.+... .+.. . ...+. +...........+.. ....+.++++|+|++||++|.++|+++
T Consensus 263 ~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I~vPvLIi~G~~D~vvp~~~ 342 (395)
T PLN02652 263 LVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSVTVPFMVLHGTADRVTDPLA 342 (395)
T ss_pred HhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccCCCCEEEEEeCCCCCCCHHH
Confidence 00000000000 0000 0 00000 000000000000000 123467899999999999999999999
Q ss_pred HHHHHHHCCC
Q 003886 778 GLQVIYHIPF 787 (789)
Q Consensus 778 ~~~l~~~l~~ 787 (789)
+.++++.+..
T Consensus 343 a~~l~~~~~~ 352 (395)
T PLN02652 343 SQDLYNEAAS 352 (395)
T ss_pred HHHHHHhcCC
Confidence 9999998753
|
|
| >PRK10749 lysophospholipase L2; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-14 Score=152.32 Aligned_cols=129 Identities=22% Similarity=0.286 Sum_probs=91.1
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
.+...+|..++...+.|. ...++||++||... ....|......|+++||.|+++|+|| +|.+........
T Consensus 34 ~~~~~~g~~l~~~~~~~~-----~~~~~vll~HG~~~--~~~~y~~~~~~l~~~g~~v~~~D~~G---~G~S~~~~~~~~ 103 (330)
T PRK10749 34 EFTGVDDIPIRFVRFRAP-----HHDRVVVICPGRIE--SYVKYAELAYDLFHLGYDVLIIDHRG---QGRSGRLLDDPH 103 (330)
T ss_pred EEEcCCCCEEEEEEccCC-----CCCcEEEEECCccc--hHHHHHHHHHHHHHCCCeEEEEcCCC---CCCCCCCCCCCC
Confidence 455668888888777653 24578999999654 24456667778899999999999998 444322110111
Q ss_pred CCc-cc----HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 647 VGS-QD----VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 647 ~~~-~~----~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
.+. .. ++|+.+.++.+.+. .+..++.++|||+||.+++.++.++|++++++|+.+|...
T Consensus 104 ~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~ 167 (330)
T PRK10749 104 RGHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFG 167 (330)
T ss_pred cCccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhc
Confidence 111 12 34555555554433 3567899999999999999999999999999999998653
|
|
| >KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.2e-15 Score=135.39 Aligned_cols=190 Identities=21% Similarity=0.282 Sum_probs=138.9
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHH-HHHHCCcEEEEEcCCCCCCCCchhhccCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPG 645 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~-~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~ 645 (789)
++...|..++++|++... ...|+++++|+..+.+ ..+...+. ++.+.++.|+.++||| ||.+.... .
T Consensus 58 ~l~T~D~vtL~a~~~~~E-----~S~pTlLyfh~NAGNm--Ghr~~i~~~fy~~l~mnv~ivsYRG---YG~S~Gsp--s 125 (300)
T KOG4391|consen 58 ELRTRDKVTLDAYLMLSE-----SSRPTLLYFHANAGNM--GHRLPIARVFYVNLKMNVLIVSYRG---YGKSEGSP--S 125 (300)
T ss_pred EEEcCcceeEeeeeeccc-----CCCceEEEEccCCCcc--cchhhHHHHHHHHcCceEEEEEeec---cccCCCCc--c
Confidence 556678899999999832 3889999999966643 22333333 6678999999999998 77654221 1
Q ss_pred CCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhh
Q 003886 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (789)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~ 725 (789)
.-| -.-|..++++|+..++..|..++.++|.|.||..++.+|++..+++.|+|+.+.+..+..+....-.+.
T Consensus 126 E~G--L~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i~~v~p~------ 197 (300)
T KOG4391|consen 126 EEG--LKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAIPLVFPF------ 197 (300)
T ss_pred ccc--eeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhhheeccc------
Confidence 222 245889999999999999999999999999999999999999999999999999988755532211110
Q ss_pred ccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
.. ++ .+.+.... .++-...+.+-+.|.|++.|.+|.+|||-+..+||+...
T Consensus 198 -~~---k~---i~~lc~kn---~~~S~~ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~ 248 (300)
T KOG4391|consen 198 -PM---KY---IPLLCYKN---KWLSYRKIGQCRMPFLFISGLKDELVPPVMMRQLYELCP 248 (300)
T ss_pred -hh---hH---HHHHHHHh---hhcchhhhccccCceEEeecCccccCCcHHHHHHHHhCc
Confidence 00 00 01111111 233334455778899999999999999999999998765
|
|
| >TIGR02821 fghA_ester_D S-formylglutathione hydrolase | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-14 Score=149.23 Aligned_cols=198 Identities=11% Similarity=0.085 Sum_probs=121.7
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHH-HHCCcEEEEEcC--CCCCCCC----------ch
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFL-SSVGYSLLIVNY--RGSLGFG----------EE 638 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~l-a~~Gy~V~~~d~--rGs~G~G----------~~ 638 (789)
-+.++...++.|+++. .+++|+|+++||.+.+.....+....+.+ ++.||.|++||. ||.+-.| ..
T Consensus 23 ~~~~~~~~v~~P~~~~-~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~~~ 101 (275)
T TIGR02821 23 CGVPMTFGVFLPPQAA-AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTGIAGEDDAWDFGKGAG 101 (275)
T ss_pred cCCceEEEEEcCCCcc-CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCCCCCCcccccccCCcc
Confidence 4567888999998643 45689999999977643222222233444 467999999997 5532111 11
Q ss_pred hh-ccCCCCCC--cccHHHHHHHHHHHHHc-CCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcC
Q 003886 639 AL-QSLPGKVG--SQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 714 (789)
Q Consensus 639 ~~-~~~~~~~~--~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~ 714 (789)
+. +.....+. ......+.+.+..+++. ..+|.++++|+|+|+||++++.++.++|++|+++++.+|+.+....
T Consensus 102 ~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~~~~~--- 178 (275)
T TIGR02821 102 FYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSAFAPIVAPSRC--- 178 (275)
T ss_pred ccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEEECCccCcccC---
Confidence 10 00000011 11123334444444443 3478899999999999999999999999999999999999764211
Q ss_pred CCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCC--CCCCCEEEEEeCCCCCCCh-HHHHHHHHHCCC
Q 003886 715 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS--KVKTPTIFLLGAQDLRVPV-SNGLQVIYHIPF 787 (789)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~--~i~~P~Lii~G~~D~~vp~-~~~~~l~~~l~~ 787 (789)
.+.. . ....+.+... +.+...+|...+. +...|++++||++|..||. .++..+.++|++
T Consensus 179 ----~~~~-~-----~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~~~~~~~~l~~ 240 (275)
T TIGR02821 179 ----PWGQ-K-----AFSAYLGADE----AAWRSYDASLLVADGGRHSTILIDQGTADQFLDEQLRPDAFEQACRA 240 (275)
T ss_pred ----cchH-H-----HHHHHhcccc----cchhhcchHHHHhhcccCCCeeEeecCCCcccCccccHHHHHHHHHH
Confidence 1110 0 0111111111 1122344444333 3467999999999999999 688888888764
|
This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well. |
| >PRK10985 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.1e-14 Score=150.43 Aligned_cols=208 Identities=13% Similarity=0.131 Sum_probs=124.6
Q ss_pred ecCCCeeEEEEEE-ecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 569 TKGAQKPFEAIFV-SSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 569 ~~~~g~~l~~~~~-~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
+..||..+..... .|. ...+.|+||++||.+++.........+..|+++||.|+++|+||.+|..... ....
T Consensus 37 ~~~dg~~~~l~w~~~~~---~~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~----~~~~ 109 (324)
T PRK10985 37 ELPDGDFVDLAWSEDPA---QARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRL----HRIY 109 (324)
T ss_pred ECCCCCEEEEecCCCCc---cCCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCC----cceE
Confidence 3446655543322 232 2345799999999876543333344677899999999999999954432111 1111
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCc--eeEEEEeCCccchhhhhcCCC-----CCcc
Q 003886 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK--FVAAAARNPLCNLALMVGTTD-----IPDW 720 (789)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~--~~a~v~~~pv~~~~~~~~~~~-----~~~~ 720 (789)
.....+|+.++++++.++ ....++.++|||+||.+++.+++++++. ++++|+.++..++........ ....
T Consensus 110 ~~~~~~D~~~~i~~l~~~--~~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~~~~~~~~~~~~~ 187 (324)
T PRK10985 110 HSGETEDARFFLRWLQRE--FGHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSYRMEQGFSRVYQR 187 (324)
T ss_pred CCCchHHHHHHHHHHHHh--CCCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHHHHhhhHHHHHHH
Confidence 223478999999999886 3456899999999999888877776543 788888877655421100000 0000
Q ss_pred hhhhh-----------ccCc------------ccccc---CCCC---ChhhHHHHHhcCccccCCCCCCCEEEEEeCCCC
Q 003886 721 CYVES-----------YGSK------------GKDSF---TESP---SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 771 (789)
Q Consensus 721 ~~~~~-----------~~~~------------~~~~~---~~~~---~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~ 771 (789)
.+... +... .++.+ ...+ .....+.|...+....+.++++|+|+|+|++|+
T Consensus 188 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~~i~~P~lii~g~~D~ 267 (324)
T PRK10985 188 YLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLNQIRKPTLIIHAKDDP 267 (324)
T ss_pred HHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHhCCCCCEEEEecCCCC
Confidence 00000 0000 00000 0000 012234455666666789999999999999999
Q ss_pred CCChHHHHHHHHHC
Q 003886 772 RVPVSNGLQVIYHI 785 (789)
Q Consensus 772 ~vp~~~~~~l~~~l 785 (789)
+++++....+.+..
T Consensus 268 ~~~~~~~~~~~~~~ 281 (324)
T PRK10985 268 FMTHEVIPKPESLP 281 (324)
T ss_pred CCChhhChHHHHhC
Confidence 99988777665444
|
|
| >PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively [] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.3e-15 Score=153.27 Aligned_cols=209 Identities=16% Similarity=0.157 Sum_probs=132.5
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH--H------HHHHHHCCcEEEEEcCCCCCCCCchhhccC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK--S------LAFLSSVGYSLLIVNYRGSLGFGEEALQSL 643 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~--~------~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~ 643 (789)
||.+|.+.+++| +.+..++.|+||..|+.........-.. . ...|+++||+|+.+|.||.++.+..+...
T Consensus 1 DGv~L~adv~~P-~~~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~~- 78 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDPM- 78 (272)
T ss_dssp TS-EEEEEEEEE---TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-TT-
T ss_pred CCCEEEEEEEec-CCCCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCccccC-
Confidence 689999999999 4457899999999998553211111111 0 12399999999999999976655544221
Q ss_pred CCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh-hhcCCCC-----
Q 003886 644 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-MVGTTDI----- 717 (789)
Q Consensus 644 ~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~-~~~~~~~----- 717 (789)
...+.+|..++|+|+.++++. ..||+++|.||+|+.++.+|...|..+||++...+..|+.. .....-.
T Consensus 79 ----~~~e~~D~~d~I~W~~~Qpws-~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~~~~~ 153 (272)
T PF02129_consen 79 ----SPNEAQDGYDTIEWIAAQPWS-NGKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAFRLGF 153 (272)
T ss_dssp ----SHHHHHHHHHHHHHHHHCTTE-EEEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEEBCCH
T ss_pred ----ChhHHHHHHHHHHHHHhCCCC-CCeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCcccccc
Confidence 566899999999999999765 46999999999999999999978889999999998887654 2111111
Q ss_pred -Ccchhhhhc----cC---c-----------------cccccCCCC--------ChhhHHHHHhcCccccCCCCCCCEEE
Q 003886 718 -PDWCYVESY----GS---K-----------------GKDSFTESP--------SVEDLTRFHSKSPISHISKVKTPTIF 764 (789)
Q Consensus 718 -~~~~~~~~~----~~---~-----------------~~~~~~~~~--------~~~~~~~~~~~sp~~~~~~i~~P~Li 764 (789)
..|...... .. . .+....... .....+.+.+.++...+.++++|+|+
T Consensus 154 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~vP~l~ 233 (272)
T PF02129_consen 154 FAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKIDVPVLI 233 (272)
T ss_dssp HHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--SEEEE
T ss_pred hhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCCCCEEE
Confidence 112000000 00 0 000000000 00111234445555567899999999
Q ss_pred EEeCCCCCCChHHHHHHHHHCCCC
Q 003886 765 LLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 765 i~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
++|-.|.... .++.+.|++|++.
T Consensus 234 v~Gw~D~~~~-~~~~~~~~~l~~~ 256 (272)
T PF02129_consen 234 VGGWYDTLFL-RGALRAYEALRAP 256 (272)
T ss_dssp EEETTCSSTS-HHHHHHHHHHCTT
T ss_pred ecccCCcccc-hHHHHHHHHhhcC
Confidence 9999997777 8999999998754
|
It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A .... |
| >COG1647 Esterase/lipase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=135.90 Aligned_cols=177 Identities=20% Similarity=0.248 Sum_probs=121.2
Q ss_pred cEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCcc
Q 003886 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (789)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (789)
.+|+++||..++ .........+|.++||.|.+|+|+|.+--.+.+.+..+.+| ++|+.++.++|.+.++ +.
T Consensus 16 ~AVLllHGFTGt--~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy---~e 86 (243)
T COG1647 16 RAVLLLHGFTGT--PRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY---DE 86 (243)
T ss_pred EEEEEEeccCCC--cHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC---Ce
Confidence 889999997664 56777788999999999999999985444445554433333 7899999999998863 68
Q ss_pred EEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCc-chhhhhccCccccccCCCCChhhHHHHHhc--
Q 003886 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD-WCYVESYGSKGKDSFTESPSVEDLTRFHSK-- 749 (789)
Q Consensus 673 v~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 749 (789)
|.|+|.||||.+++.++.++| .|++|..++..+....... +.. ..+.+. .+.+.+.......+.+..+
T Consensus 87 I~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~i--ie~~l~y~~~-----~kk~e~k~~e~~~~e~~~~~~ 157 (243)
T COG1647 87 IAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRII--IEGLLEYFRN-----AKKYEGKDQEQIDKEMKSYKD 157 (243)
T ss_pred EEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhh--hHHHHHHHHH-----hhhccCCCHHHHHHHHHHhhc
Confidence 999999999999999999988 7777777665442111000 000 000011 1111111111111112211
Q ss_pred --------------CccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 750 --------------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 750 --------------sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.....+..|..|+|+++|.+|++||.+.+..+|+.+..
T Consensus 158 ~~~~~~~~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s 209 (243)
T COG1647 158 TPMTTTAQLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVES 209 (243)
T ss_pred chHHHHHHHHHHHHHHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccC
Confidence 22356788999999999999999999999999998754
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-12 Score=132.03 Aligned_cols=187 Identities=17% Similarity=0.094 Sum_probs=138.9
Q ss_pred eeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceE
Q 003886 259 WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (789)
Q Consensus 259 ~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~ 338 (789)
|..--|+.++...+.+.|+++...|-+.++ .....+....+.-|++. ++...++.+ .|-
T Consensus 327 fa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv---~~~~~VrY~r~~~~~e~----~vigt~dgD--------------~l~ 385 (668)
T COG4946 327 FAVVNGDYIALVSRGKAFIMRPWDGYSIQV---GKKGGVRYRRIQVDPEG----DVIGTNDGD--------------KLG 385 (668)
T ss_pred hccCCCcEEEEEecCcEEEECCCCCeeEEc---CCCCceEEEEEccCCcc----eEEeccCCc--------------eEE
Confidence 333336666666788899999888888777 34455777788888887 776664333 577
Q ss_pred EEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCC
Q 003886 339 AVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 418 (789)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~ 418 (789)
++|. ++++.+++..+.+.+.....|||||+++..-+ ..+||++|+++|..+.
T Consensus 386 iyd~-----------------~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd-----------r~el~vididngnv~~ 437 (668)
T COG4946 386 IYDK-----------------DGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND-----------RFELWVIDIDNGNVRL 437 (668)
T ss_pred EEec-----------------CCceEEEeeCCccceEEEEEcCCCcEEEEEcC-----------ceEEEEEEecCCCeeE
Confidence 8887 88899999999999999999999998875443 3579999999988765
Q ss_pred cccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeC-CeEEEEEEECCCCcEEEecCCCCCceeEEeee
Q 003886 419 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-SSQVIISVNVSSGELLRITPAESNFSWSLLTL 497 (789)
Q Consensus 419 ~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~-~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~ 497 (789)
+-.....+ +..+.|+|+++.|.+.-..+ -.++|-..|++++++-.+|...+.-..++|.+
T Consensus 438 idkS~~~l-------------------Itdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~ 498 (668)
T COG4946 438 IDKSEYGL-------------------ITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDP 498 (668)
T ss_pred ecccccce-------------------eEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCC
Confidence 44333222 34678999999887765433 24567778888999999988766333479999
Q ss_pred cCCEEEEEEeCCCCCC
Q 003886 498 DGDNIIAVSSSPVDVP 513 (789)
Q Consensus 498 dg~~l~~~~ss~~~p~ 513 (789)
||++|+|.+...-+|.
T Consensus 499 d~ryLYfLs~RsLdPs 514 (668)
T COG4946 499 DGRYLYFLSARSLDPS 514 (668)
T ss_pred CCcEEEEEeccccCCC
Confidence 9999999987666554
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-13 Score=135.75 Aligned_cols=281 Identities=20% Similarity=0.274 Sum_probs=175.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
+.+...+|||+|++|+.-+.+ +...+|+-....+...+.+.. . |...++|||||++||..+.+....
T Consensus 116 e~Vl~~~fsp~g~~l~tGsGD-----~TvR~WD~~TeTp~~t~KgH~-~------WVlcvawsPDgk~iASG~~dg~I~- 182 (480)
T KOG0271|consen 116 EAVLSVQFSPTGSRLVTGSGD-----TTVRLWDLDTETPLFTCKGHK-N------WVLCVAWSPDGKKIASGSKDGSIR- 182 (480)
T ss_pred CcEEEEEecCCCceEEecCCC-----ceEEeeccCCCCcceeecCCc-c------EEEEEEECCCcchhhccccCCeEE-
Confidence 447788999999999864332 356778543334444443332 2 458999999999999988776433
Q ss_pred CCccCCC-CCCCCCCcCCCCCCCcceeeCCc-----ccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003886 234 PTFSLGS-TKGGSSDKDCNSWKGQGDWEEDW-----GETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (789)
Q Consensus 234 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~-----g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (789)
.|+... ...+..+..+..|+....|+|-. +...+..+++.+.+||+..|...... ......+.-+.|--+|
T Consensus 183 -lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l-sgHT~~VTCvrwGG~g- 259 (480)
T KOG0271|consen 183 -LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL-SGHTASVTCVRWGGEG- 259 (480)
T ss_pred -EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe-ccCccceEEEEEcCCc-
Confidence 455332 34567778888999887786532 33345556899999999988766552 3334567788886543
Q ss_pred CCccEEEEEeecCCcee----eeeeeecc---------------------------------------------------
Q 003886 308 GLHQYLVFVGWSSETRK----LGIKYCYN--------------------------------------------------- 332 (789)
Q Consensus 308 ~~~~~l~f~~~~~~~~~----~g~~~~~~--------------------------------------------------- 332 (789)
++|.+..+..-+ ..-+.|..
T Consensus 260 -----liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~ 334 (480)
T KOG0271|consen 260 -----LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKD 334 (480)
T ss_pred -----eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhcc
Confidence 666653322000 00000000
Q ss_pred ---------CCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCcccc
Q 003886 333 ---------RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT 403 (789)
Q Consensus 333 ---------~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~ 403 (789)
....||+++. ......+.++|.+..-+.+..|||||++||..+-+.
T Consensus 335 ~~erlVSgsDd~tlflW~p---------------~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk---------- 389 (480)
T KOG0271|consen 335 SGERLVSGSDDFTLFLWNP---------------FKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDK---------- 389 (480)
T ss_pred CcceeEEecCCceEEEecc---------------cccccchhhhhchhhheeeEEECCCccEEEEeeccc----------
Confidence 0011222221 112234456777777788999999999999888654
Q ss_pred ceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003886 404 DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (789)
Q Consensus 404 ~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~l 483 (789)
.+.+||-.+|+-...-.+. ...++.++||.|.+ |+++.+.+....+|.+ .+.++..=
T Consensus 390 -SVkLW~g~tGk~lasfRGH-------------------v~~VYqvawsaDsR-LlVS~SkDsTLKvw~V--~tkKl~~D 446 (480)
T KOG0271|consen 390 -SVKLWDGRTGKFLASFRGH-------------------VAAVYQVAWSADSR-LLVSGSKDSTLKVWDV--RTKKLKQD 446 (480)
T ss_pred -ceeeeeCCCcchhhhhhhc-------------------cceeEEEEeccCcc-EEEEcCCCceEEEEEe--eeeeeccc
Confidence 4788887776653211111 12356789999987 7788777776666655 47777655
Q ss_pred cCCCC-CceeEEeeecCCEEE
Q 003886 484 TPAES-NFSWSLLTLDGDNII 503 (789)
Q Consensus 484 t~~~~-~~~~~~~s~dg~~l~ 503 (789)
.+++. .+....++|||+.++
T Consensus 447 LpGh~DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 447 LPGHADEVFAVDWSPDGQRVA 467 (480)
T ss_pred CCCCCceEEEEEecCCCceee
Confidence 55443 455568999998764
|
|
| >PLN02511 hydrolase | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.2e-14 Score=151.97 Aligned_cols=211 Identities=17% Similarity=0.206 Sum_probs=125.2
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
+...||..+....+.+.........|+||++||..++.....+......+.++||.|+++|+||.++ +.... +..+
T Consensus 76 l~~~DG~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~---s~~~~-~~~~ 151 (388)
T PLN02511 76 LRTPDGGAVALDWVSGDDRALPADAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCAD---SPVTT-PQFY 151 (388)
T ss_pred EECCCCCEEEEEecCcccccCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCC---CCCCC-cCEE
Confidence 3445666666433332211123457899999997665332222335566778999999999999443 32111 1112
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCc--eeEEEEeCCccchhh----hhcC-CCCCcc
Q 003886 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK--FVAAAARNPLCNLAL----MVGT-TDIPDW 720 (789)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~--~~a~v~~~pv~~~~~----~~~~-~~~~~~ 720 (789)
.....+|+.++++++..+ ....++.++|||+||.+++.++.+++++ ++++++.++..++.. +... ......
T Consensus 152 ~~~~~~Dl~~~i~~l~~~--~~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~~~~~~~~~~y~~ 229 (388)
T PLN02511 152 SASFTGDLRQVVDHVAGR--YPSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADEDFHKGFNNVYDK 229 (388)
T ss_pred cCCchHHHHHHHHHHHHH--CCCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHHHHhccHHHHHHH
Confidence 234478999999999876 3456899999999999999999999886 777777766554311 0000 000000
Q ss_pred hhh----h-------hcc------------C-cccccc--------CCCCChhhHHHHHhcCccccCCCCCCCEEEEEeC
Q 003886 721 CYV----E-------SYG------------S-KGKDSF--------TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 768 (789)
Q Consensus 721 ~~~----~-------~~~------------~-~~~~~~--------~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~ 768 (789)
.+. . .+. . ..+..+ .+.. ...+.|.+.++...+.+|++|+|+|+|+
T Consensus 230 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~--~~~~yy~~~s~~~~L~~I~vPtLiI~g~ 307 (388)
T PLN02511 230 ALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFK--SVDAYYSNSSSSDSIKHVRVPLLCIQAA 307 (388)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCC--CHHHHHHHcCchhhhccCCCCeEEEEcC
Confidence 000 0 000 0 000000 0000 1112345667777899999999999999
Q ss_pred CCCCCChHHH-HHHHHHCC
Q 003886 769 QDLRVPVSNG-LQVIYHIP 786 (789)
Q Consensus 769 ~D~~vp~~~~-~~l~~~l~ 786 (789)
+|+++|++.. ..+.+.++
T Consensus 308 dDpi~p~~~~~~~~~~~~p 326 (388)
T PLN02511 308 NDPIAPARGIPREDIKANP 326 (388)
T ss_pred CCCcCCcccCcHhHHhcCC
Confidence 9999998754 33444443
|
|
| >PF10503 Esterase_phd: Esterase PHB depolymerase | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.7e-14 Score=138.39 Aligned_cols=190 Identities=22% Similarity=0.202 Sum_probs=119.4
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH--HHHHHH-HCCcEEEEEcCCCCCCCCchhhc-cCCCCCCcccH
Q 003886 577 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK--SLAFLS-SVGYSLLIVNYRGSLGFGEEALQ-SLPGKVGSQDV 652 (789)
Q Consensus 577 ~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~--~~~~la-~~Gy~V~~~d~rGs~G~G~~~~~-~~~~~~~~~~~ 652 (789)
...+|.|++.. ..+.|+||++||+..+ ...|.. .+..++ ++||+|+.|+..........|.- ......+..+.
T Consensus 2 ~Y~lYvP~~~~-~~~~PLVv~LHG~~~~--a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~~~~~~g~~d~ 78 (220)
T PF10503_consen 2 SYRLYVPPGAP-RGPVPLVVVLHGCGQS--AEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFSDDQQRGGGDV 78 (220)
T ss_pred cEEEecCCCCC-CCCCCEEEEeCCCCCC--HHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccccccccCccch
Confidence 35688888653 3478999999997664 344432 234555 68999999996422111122210 01123344567
Q ss_pred HHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCcccc
Q 003886 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 732 (789)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (789)
..+.+.++++.++..+|++||.++|+|.||+|+..++..+||+|.++...+++..-... ..... ...+.. +
T Consensus 79 ~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~---~~~~a---~~~m~~-g-- 149 (220)
T PF10503_consen 79 AFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAA---SGASA---LSAMRS-G-- 149 (220)
T ss_pred hhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeeccccccccc---CcccH---HHHhhC-C--
Confidence 77888999999988899999999999999999999999999999999988886421110 00000 000000 0
Q ss_pred ccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHC
Q 003886 733 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHI 785 (789)
Q Consensus 733 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l 785 (789)
..+.......-...+ .... ..|++|+||+.|..|.+.++.++.+..
T Consensus 150 ---~~~~p~~~~~a~~~~--g~~~--~~P~~v~hG~~D~tV~~~n~~~~~~q~ 195 (220)
T PF10503_consen 150 ---PRPAPAAAWGARSDA--GAYP--GYPRIVFHGTADTTVNPQNADQLVAQW 195 (220)
T ss_pred ---CCCChHHHHHhhhhc--cCCC--CCCEEEEecCCCCccCcchHHHHHHHH
Confidence 001101101111111 1112 249999999999999999999887764
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.4e-13 Score=146.85 Aligned_cols=262 Identities=17% Similarity=0.183 Sum_probs=162.2
Q ss_pred CCCCCeEEEEecCCC-----CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCC
Q 003886 162 SPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (789)
Q Consensus 162 SPdG~~la~~~~~~~-----~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~ 235 (789)
||||+++++..+... ....+++.+ ..++..++....... ..+.|||||++|||+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~----------~~~~~sP~g~~~~~v~--------- 61 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKL----------QDAKWSPDGKYIAFVR--------- 61 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTB----------SEEEE-SSSTEEEEEE---------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCcccc----------ccceeecCCCeeEEEe---------
Confidence 899999999765431 223455555 444444443331222 7899999999999983
Q ss_pred ccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC----------------C-ccc
Q 003886 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS----------------L-SVG 298 (789)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~----------------~-~~~ 298 (789)
+.+||+.+..+++.++|+ ..+. + ...
T Consensus 62 ------------------------------------~~nly~~~~~~~~~~~lT-~dg~~~i~nG~~dwvyeEEv~~~~~ 104 (353)
T PF00930_consen 62 ------------------------------------DNNLYLRDLATGQETQLT-TDGEPGIYNGVPDWVYEEEVFDRRS 104 (353)
T ss_dssp ------------------------------------TTEEEEESSTTSEEEESE-S--TTTEEESB--HHHHHHTSSSSB
T ss_pred ------------------------------------cCceEEEECCCCCeEEec-cccceeEEcCccceecccccccccc
Confidence 367999999888888885 1110 1 234
Q ss_pred eEEEeeCCCCCccEEEEEeecCCc-ee----------------eeeee----eccCCcceEEEecccccchhhhhhhhcC
Q 003886 299 QVVWAPLNEGLHQYLVFVGWSSET-RK----------------LGIKY----CYNRPCALYAVRVSLYKSEASELELKES 357 (789)
Q Consensus 299 ~~~wSPDg~~~~~~l~f~~~~~~~-~~----------------~g~~~----~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 357 (789)
.+.|||||++ |+|....... +. .-+.| ..|....|+++|+
T Consensus 105 ~~~WSpd~~~----la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~--------------- 165 (353)
T PF00930_consen 105 AVWWSPDSKY----LAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDL--------------- 165 (353)
T ss_dssp SEEE-TTSSE----EEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEES---------------
T ss_pred ceEECCCCCE----EEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEEC---------------
Confidence 6789999999 9998754431 11 11111 1133345777777
Q ss_pred CCCCCCeeecC------CCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeee
Q 003886 358 SSEDLPVVNLT------ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 431 (789)
Q Consensus 358 ~~~~~~~~~Lt------~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~ 431 (789)
++++...+. ........+.|++|++.|++...... .....|.++|..++..+.+....
T Consensus 166 --~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~------q~~~~l~~~d~~tg~~~~~~~e~-------- 229 (353)
T PF00930_consen 166 --ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRD------QNRLDLVLCDASTGETRVVLEET-------- 229 (353)
T ss_dssp --SSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETT------STEEEEEEEEECTTTCEEEEEEE--------
T ss_pred --CCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccC------CCEEEEEEEECCCCceeEEEEec--------
Confidence 455443332 23445778999999997766654432 24457888898775553221110
Q ss_pred ccCCCCCccccccCCCCCccc-cCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCc-eeEEeeecCCEEEEEEeCC
Q 003886 432 CAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNF-SWSLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws-~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~-~~~~~s~dg~~l~~~~ss~ 509 (789)
.+ .|......+.|. +++..+++.+...|..+||.++.+++..++||.+...+ ....++.+++.|+|++...
T Consensus 230 ------~~-~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~ 302 (353)
T PF00930_consen 230 ------SD-GWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGD 302 (353)
T ss_dssp ------SS-SSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSG
T ss_pred ------CC-cceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCC
Confidence 00 122222334454 88899999998889999999999999999999888755 3457788889999998763
Q ss_pred C-CCCeEEEEeec
Q 003886 510 V-DVPQVKYGYFV 521 (789)
Q Consensus 510 ~-~p~~i~~~~~~ 521 (789)
. .-..||++++.
T Consensus 303 ~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 303 NPGERHLYRVSLD 315 (353)
T ss_dssp GTTSBEEEEEETT
T ss_pred CCCceEEEEEEeC
Confidence 3 23457777766
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PRK00870 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.6e-13 Score=142.85 Aligned_cols=105 Identities=21% Similarity=0.357 Sum_probs=79.4
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
..|.||++||.+. ....|......|.+.||.|+++|+|| +|.+.... .......++..+.+..++++ ++.
T Consensus 45 ~~~~lvliHG~~~--~~~~w~~~~~~L~~~gy~vi~~Dl~G---~G~S~~~~---~~~~~~~~~~a~~l~~~l~~--l~~ 114 (302)
T PRK00870 45 DGPPVLLLHGEPS--WSYLYRKMIPILAAAGHRVIAPDLIG---FGRSDKPT---RREDYTYARHVEWMRSWFEQ--LDL 114 (302)
T ss_pred CCCEEEEECCCCC--chhhHHHHHHHHHhCCCEEEEECCCC---CCCCCCCC---CcccCCHHHHHHHHHHHHHH--cCC
Confidence 3578999999765 35577778888988899999999998 66553211 11123455666666655554 456
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
+++.|+|||+||.++..++.++|++++++|+.++.
T Consensus 115 ~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 149 (302)
T PRK00870 115 TDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTG 149 (302)
T ss_pred CCEEEEEEChHHHHHHHHHHhChhheeEEEEeCCC
Confidence 78999999999999999999999999999998864
|
|
| >COG2267 PldB Lysophospholipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.3e-13 Score=140.86 Aligned_cols=207 Identities=15% Similarity=0.192 Sum_probs=129.2
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
.+...||..+....+.+. ..+..+||++||.... ...|...+..|..+||.|+++|.|| +|.+.+ ...+.
T Consensus 13 ~~~~~d~~~~~~~~~~~~----~~~~g~Vvl~HG~~Eh--~~ry~~la~~l~~~G~~V~~~D~RG---hG~S~r-~~rg~ 82 (298)
T COG2267 13 YFTGADGTRLRYRTWAAP----EPPKGVVVLVHGLGEH--SGRYEELADDLAARGFDVYALDLRG---HGRSPR-GQRGH 82 (298)
T ss_pred eeecCCCceEEEEeecCC----CCCCcEEEEecCchHH--HHHHHHHHHHHHhCCCEEEEecCCC---CCCCCC-CCcCC
Confidence 455668888888888764 2233899999996653 5567778889999999999999999 454432 11222
Q ss_pred CCcccHHHHHHHHHHHHHcCC--CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh--hhc------C--
Q 003886 647 VGSQDVNDVLTAIDHVIDMGL--ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL--MVG------T-- 714 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~--~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~--~~~------~-- 714 (789)
.. .+++....++.+++.-. ....+++|+||||||.+++.++.+++..++++|+.+|...+.. ... .
T Consensus 83 ~~--~f~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~~~~~~~~~ 160 (298)
T COG2267 83 VD--SFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLILARLALKL 160 (298)
T ss_pred ch--hHHHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHHHHHHhccc
Confidence 22 14444444444444311 2457899999999999999999999999999999999887652 100 0
Q ss_pred -C-CCCcchhhhhccCccccccCCCCChhhHHHHHhcCc-----------------------cccCCCCCCCEEEEEeCC
Q 003886 715 -T-DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP-----------------------ISHISKVKTPTIFLLGAQ 769 (789)
Q Consensus 715 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-----------------------~~~~~~i~~P~Lii~G~~ 769 (789)
. ..+.+.... -.......-......+..+.| ..+| .....+++.|+||+||++
T Consensus 161 ~~~~~p~~~~~~-~~~~~~~~~~~sr~~~~~~~~-~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~PvLll~g~~ 238 (298)
T COG2267 161 LGRIRPKLPVDS-NLLEGVLTDDLSRDPAEVAAY-EADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALPVLLLQGGD 238 (298)
T ss_pred ccccccccccCc-ccccCcCcchhhcCHHHHHHH-hcCCccccCCccHHHHHHHHHhhcccchhccccccCCEEEEecCC
Confidence 0 000110000 000000000000011111111 1122 122567789999999999
Q ss_pred CCCCC-hHHHHHHHHHCCC
Q 003886 770 DLRVP-VSNGLQVIYHIPF 787 (789)
Q Consensus 770 D~~vp-~~~~~~l~~~l~~ 787 (789)
|.+|+ .+...++++++..
T Consensus 239 D~vv~~~~~~~~~~~~~~~ 257 (298)
T COG2267 239 DRVVDNVEGLARFFERAGS 257 (298)
T ss_pred CccccCcHHHHHHHHhcCC
Confidence 99999 7999999988753
|
|
| >TIGR00976 /NonD putative hydrolase, CocE/NonD family | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=157.89 Aligned_cols=132 Identities=16% Similarity=0.128 Sum_probs=102.8
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc-hhh-HHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSY-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~-~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
..||.+|.+.++.|+ ..++.|+||++||....... ..+ ......|+++||+|+++|+||.++.+..+. ..
T Consensus 3 ~~DG~~L~~~~~~P~---~~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~-----~~ 74 (550)
T TIGR00976 3 MRDGTRLAIDVYRPA---GGGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFD-----LL 74 (550)
T ss_pred CCCCCEEEEEEEecC---CCCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceE-----ec
Confidence 358899999999997 34589999999985543210 111 123568999999999999999654433221 12
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh
Q 003886 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (789)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~ 710 (789)
+..+.+|+.++++|+.++++.+ .+|+++|+||||++++.++..+|+.++|+|+.++..++..
T Consensus 75 ~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~ 136 (550)
T TIGR00976 75 GSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYR 136 (550)
T ss_pred CcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhH
Confidence 2457899999999999998766 6999999999999999999988999999999999887653
|
This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases. |
| >TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=143.68 Aligned_cols=184 Identities=19% Similarity=0.323 Sum_probs=106.9
Q ss_pred CcEEEEEcCCCCCCCchhhH---HHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 003886 592 DPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~---~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (789)
.|.||++||.+... ..|. .....|++.||.|+++|+|| +|.+..............+|+.+.++. +
T Consensus 30 ~~~ivllHG~~~~~--~~~~~~~~~~~~l~~~~~~vi~~D~~G---~G~S~~~~~~~~~~~~~~~~l~~~l~~------l 98 (282)
T TIGR03343 30 GEAVIMLHGGGPGA--GGWSNYYRNIGPFVDAGYRVILKDSPG---FNKSDAVVMDEQRGLVNARAVKGLMDA------L 98 (282)
T ss_pred CCeEEEECCCCCch--hhHHHHHHHHHHHHhCCCEEEEECCCC---CCCCCCCcCcccccchhHHHHHHHHHH------c
Confidence 46799999966542 2332 33456778899999999998 555432211111111123444444443 4
Q ss_pred CCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCC------------CCCcch-hhhhccCccccc--
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT------------DIPDWC-YVESYGSKGKDS-- 733 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~------------~~~~~~-~~~~~~~~~~~~-- 733 (789)
+.++++++|||+||++++.++.++|++++++|+.+|........... ..+... +...+.......
T Consensus 99 ~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (282)
T TIGR03343 99 DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSL 178 (282)
T ss_pred CCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCccc
Confidence 66899999999999999999999999999999988742110000000 000000 000000000000
Q ss_pred ------------cCCCCChhhHHHHH---------hcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 734 ------------FTESPSVEDLTRFH---------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 734 ------------~~~~~~~~~~~~~~---------~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
.... ......+. ..+....+.++++|+|+++|++|..||++.+.++++.+++.
T Consensus 179 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~~~ 252 (282)
T TIGR03343 179 ITEELLQGRWENIQRQ--PEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNMPDA 252 (282)
T ss_pred CcHHHHHhHHHHhhcC--HHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCCchhHHHHHHhCCCC
Confidence 0000 00111111 01112246789999999999999999999999999988764
|
Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself. |
| >COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-13 Score=136.15 Aligned_cols=168 Identities=19% Similarity=0.177 Sum_probs=127.4
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhh----ccCC----
Q 003886 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEAL----QSLP---- 644 (789)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~----~~~~---- 644 (789)
+.++.+++..|. .....|.||++|+..+- ........+.|+.+||.|++||+-+..|...... ....
T Consensus 11 ~~~~~~~~a~P~---~~~~~P~VIv~hei~Gl--~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~ 85 (236)
T COG0412 11 DGELPAYLARPA---GAGGFPGVIVLHEIFGL--NPHIRDVARRLAKAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVE 85 (236)
T ss_pred CceEeEEEecCC---cCCCCCEEEEEecccCC--chHHHHHHHHHHhCCcEEEechhhccCCCCCcccccHHHHhhhhhc
Confidence 378999999997 34445999999996553 4466677889999999999999865333222211 0000
Q ss_pred CCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhh
Q 003886 645 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 724 (789)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~ 724 (789)
.........|+.++++||..++.++.++|+++|+|+||.+++.++.+.| .++++|+..|..-.
T Consensus 86 ~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~~~---------------- 148 (236)
T COG0412 86 RVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGLIA---------------- 148 (236)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCCCC----------------
Confidence 0111344789999999999998899999999999999999999999766 79999988774310
Q ss_pred hccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 725 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
+......++++|+|+++|+.|..+|...-..+.+++..
T Consensus 149 -------------------------~~~~~~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~ 186 (236)
T COG0412 149 -------------------------DDTADAPKIKVPVLLHLAGEDPYIPAADVDALAAALED 186 (236)
T ss_pred -------------------------CcccccccccCcEEEEecccCCCCChhHHHHHHHHHHh
Confidence 00112668999999999999999999988888887754
|
|
| >TIGR03611 RutD pyrimidine utilization protein D | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-13 Score=139.56 Aligned_cols=186 Identities=15% Similarity=0.266 Sum_probs=111.9
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (789)
.+.|+||++||.+.+ ...|......|. +||.|+++|+|| +|.+.... . ....++|..+.+..+++. ++
T Consensus 11 ~~~~~iv~lhG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G---~G~S~~~~-~---~~~~~~~~~~~~~~~i~~--~~ 78 (257)
T TIGR03611 11 ADAPVVVLSSGLGGS--GSYWAPQLDVLT-QRFHVVTYDHRG---TGRSPGEL-P---PGYSIAHMADDVLQLLDA--LN 78 (257)
T ss_pred CCCCEEEEEcCCCcc--hhHHHHHHHHHH-hccEEEEEcCCC---CCCCCCCC-c---ccCCHHHHHHHHHHHHHH--hC
Confidence 456899999997664 445655555554 579999999998 44433211 1 122355555555555544 35
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhh-----------cCCCCCcchhh-h--hccCccc----
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-----------GTTDIPDWCYV-E--SYGSKGK---- 731 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~-----------~~~~~~~~~~~-~--~~~~~~~---- 731 (789)
..++.++|||+||++++.++.++|++++++|+.++........ .......+... . .+....+
T Consensus 79 ~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (257)
T TIGR03611 79 IERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWISENA 158 (257)
T ss_pred CCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHhhccc
Confidence 6789999999999999999999999999999988754321100 00000000000 0 0000000
Q ss_pred --------cccCCC-CCh---hhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 732 --------DSFTES-PSV---EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 732 --------~~~~~~-~~~---~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
...... ... .....+...+....++++++|+|+++|++|..+|++++.++++.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~ 226 (257)
T TIGR03611 159 ARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAALPN 226 (257)
T ss_pred hhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccCHHHHHHHHHhcCC
Confidence 000000 000 01111222333445778999999999999999999999999988765
|
This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067. |
| >TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.7e-13 Score=138.82 Aligned_cols=200 Identities=13% Similarity=0.187 Sum_probs=119.1
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
-+|.+++.+.... +...|.||++||.+.+ ...|......|.+ +|.|+++|+|| +|.+.... ...
T Consensus 9 ~~~~~~~~~~~~~-----~~~~~plvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G---~G~S~~~~-----~~~ 72 (276)
T TIGR02240 9 LDGQSIRTAVRPG-----KEGLTPLLIFNGIGAN--LELVFPFIEALDP-DLEVIAFDVPG---VGGSSTPR-----HPY 72 (276)
T ss_pred cCCcEEEEEEecC-----CCCCCcEEEEeCCCcc--hHHHHHHHHHhcc-CceEEEECCCC---CCCCCCCC-----CcC
Confidence 3666776655321 1233678999996554 4567666777754 69999999998 66654221 123
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh-------hhcCCCCCcc---
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-------MVGTTDIPDW--- 720 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~-------~~~~~~~~~~--- 720 (789)
.++++.+.+..+++. ++.+++.|+|||+||++++.++.++|++++++|+.++...... .........+
T Consensus 73 ~~~~~~~~~~~~i~~--l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (276)
T TIGR02240 73 RFPGLAKLAARMLDY--LDYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRRYIQP 150 (276)
T ss_pred cHHHHHHHHHHHHHH--hCcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchhhhcc
Confidence 355555555555554 3457899999999999999999999999999999987653210 0000000000
Q ss_pred ----hh-hhhccCcc------ccc----cCCCCChhhHHHH---HhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHH
Q 003886 721 ----CY-VESYGSKG------KDS----FTESPSVEDLTRF---HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVI 782 (789)
Q Consensus 721 ----~~-~~~~~~~~------~~~----~~~~~~~~~~~~~---~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~ 782 (789)
.. ...+.... ... ............+ ........+.++++|+|+|+|++|..+|++++.++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~v~~~~~~~l~ 230 (276)
T TIGR02240 151 SHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGDDDPIIPLINMRLLA 230 (276)
T ss_pred ccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeCCCCcCCHHHHHHHH
Confidence 00 00000000 000 0000000000000 111222446889999999999999999999999999
Q ss_pred HHCCCC
Q 003886 783 YHIPFS 788 (789)
Q Consensus 783 ~~l~~~ 788 (789)
+.+++.
T Consensus 231 ~~~~~~ 236 (276)
T TIGR02240 231 WRIPNA 236 (276)
T ss_pred HhCCCC
Confidence 888753
|
This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. |
| >PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.8e-13 Score=154.72 Aligned_cols=170 Identities=13% Similarity=0.173 Sum_probs=118.6
Q ss_pred HHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcC--CCC------------CccEEEEEc
Q 003886 613 SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG--LAN------------PSKVTVVGG 678 (789)
Q Consensus 613 ~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~--~~d------------~~rv~l~G~ 678 (789)
..++|+.+||+|+.+|.||..+.+..+ ...+..+.+|..++|+|+..+. +.| ..||+++|.
T Consensus 271 ~~~~~~~rGYaVV~~D~RGtg~SeG~~-----~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~ 345 (767)
T PRK05371 271 LNDYFLPRGFAVVYVSGIGTRGSDGCP-----TTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGK 345 (767)
T ss_pred HHHHHHhCCeEEEEEcCCCCCCCCCcC-----ccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEE
Confidence 457899999999999999976644332 2344667899999999998532 123 579999999
Q ss_pred CccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCC----cch------hhh-hccC-----c---ccccc-----
Q 003886 679 SHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP----DWC------YVE-SYGS-----K---GKDSF----- 734 (789)
Q Consensus 679 S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~----~~~------~~~-~~~~-----~---~~~~~----- 734 (789)
||||++++.+|+..|+.++|+|..+++.++..++...... .|. ... .+.. . ..+.+
T Consensus 346 SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~ 425 (767)
T PRK05371 346 SYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLA 425 (767)
T ss_pred cHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHh
Confidence 9999999999998888999999999999876554221110 010 000 0000 0 00000
Q ss_pred -----CCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 735 -----TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 735 -----~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.........+.|...+++.++++|++|+|++||.+|.+|++.++.++|++|++
T Consensus 426 ~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~ 483 (767)
T PRK05371 426 ELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPE 483 (767)
T ss_pred hhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHh
Confidence 00000011234556778888999999999999999999999999999999864
|
|
| >PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-13 Score=125.84 Aligned_cols=131 Identities=21% Similarity=0.407 Sum_probs=100.5
Q ss_pred EEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccE
Q 003886 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 673 (789)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv 673 (789)
+||++||+..+ ...|....+.|+++||.|+.+|+++.+. .. ...++.++++++.+.. .|.++|
T Consensus 1 ~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~~~~~~~~---~~-----------~~~~~~~~~~~~~~~~-~~~~~i 63 (145)
T PF12695_consen 1 VVVLLHGWGGS--RRDYQPLAEALAEQGYAVVAFDYPGHGD---SD-----------GADAVERVLADIRAGY-PDPDRI 63 (145)
T ss_dssp EEEEECTTTTT--THHHHHHHHHHHHTTEEEEEESCTTSTT---SH-----------HSHHHHHHHHHHHHHH-CTCCEE
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEecCCCCc---cc-----------hhHHHHHHHHHHHhhc-CCCCcE
Confidence 58999997664 5567788889999999999999987332 21 1225555555553322 288999
Q ss_pred EEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccc
Q 003886 674 TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPIS 753 (789)
Q Consensus 674 ~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~ 753 (789)
+++|||+||.+++.++.+. .+++++|+.+|..+ ..
T Consensus 64 ~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~--------------------------------------------~~ 98 (145)
T PF12695_consen 64 ILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPD--------------------------------------------SE 98 (145)
T ss_dssp EEEEETHHHHHHHHHHHHS-TTESEEEEESESSG--------------------------------------------CH
T ss_pred EEEEEccCcHHHHHHhhhc-cceeEEEEecCccc--------------------------------------------hh
Confidence 9999999999999999987 78999999988311 01
Q ss_pred cCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 754 HISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 754 ~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
.+.+.+.|+|+++|++|..+|+++..+++++++
T Consensus 99 ~~~~~~~pv~~i~g~~D~~~~~~~~~~~~~~~~ 131 (145)
T PF12695_consen 99 DLAKIRIPVLFIHGENDPLVPPEQVRRLYEALP 131 (145)
T ss_dssp HHTTTTSEEEEEEETT-SSSHHHHHHHHHHHHC
T ss_pred hhhccCCcEEEEEECCCCcCCHHHHHHHHHHcC
Confidence 123456699999999999999999999999886
|
... |
| >PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=139.07 Aligned_cols=165 Identities=21% Similarity=0.232 Sum_probs=111.6
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCC-CCchhhc---cCC---CCCC
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLG-FGEEALQ---SLP---GKVG 648 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G-~G~~~~~---~~~---~~~~ 648 (789)
+.+++..|++ .++.|.||++|+..+- ..........|+++||.|++||+-+..+ .-....+ ... ....
T Consensus 1 ~~ay~~~P~~---~~~~~~Vvv~~d~~G~--~~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (218)
T PF01738_consen 1 IDAYVARPEG---GGPRPAVVVIHDIFGL--NPNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRP 75 (218)
T ss_dssp EEEEEEEETT---SSSEEEEEEE-BTTBS---HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSH
T ss_pred CeEEEEeCCC---CCCCCEEEEEcCCCCC--chHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHhhhH
Confidence 4688999973 3689999999996553 3445567789999999999999864333 0011000 000 0011
Q ss_pred cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccC
Q 003886 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~ 728 (789)
..-.+|+.+++++|.+++.++.+||+++|+|+||.+++.++.+. +.++++|+..|...
T Consensus 76 ~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg~~~--------------------- 133 (218)
T PF01738_consen 76 EQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYGGSP--------------------- 133 (218)
T ss_dssp HHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-SSS---------------------
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcCCCC---------------------
Confidence 12357888999999999888999999999999999999998876 68999999877100
Q ss_pred ccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 729 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
. . .+.....++++|+|+++|++|+.+|.+...++.++|+
T Consensus 134 ----------~-~--------~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~ 172 (218)
T PF01738_consen 134 ----------P-P--------PPLEDAPKIKAPVLILFGENDPFFPPEEVEALEEALK 172 (218)
T ss_dssp ----------G-G--------GHHHHGGG--S-EEEEEETT-TTS-HHHHHHHHHHHH
T ss_pred ----------C-C--------cchhhhcccCCCEeecCccCCCCCChHHHHHHHHHHH
Confidence 0 0 0112356788999999999999999999888888874
|
Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A. |
| >COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-12 Score=130.09 Aligned_cols=196 Identities=19% Similarity=0.180 Sum_probs=122.5
Q ss_pred CCC-eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCc
Q 003886 571 GAQ-KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (789)
Q Consensus 571 ~~g-~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~ 649 (789)
.|| .....|...| ...+.|+||.+||-.++.....-......+.++||.|+++|.||++|.-.. .+.-+..
T Consensus 57 pdg~~~~ldw~~~p----~~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~----~p~~yh~ 128 (345)
T COG0429 57 PDGGFIDLDWSEDP----RAAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANT----SPRLYHS 128 (345)
T ss_pred CCCCEEEEeeccCc----cccCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCccc----Ccceecc
Confidence 344 3444555445 456679999999977765555334466788999999999999997654321 1333334
Q ss_pred ccHHHHHHHHHHHHHcCCCCCccEEEEEcCccH-HHHHHHHHhCCC-ceeEEEEeCCccchhhhhcCCCCCcc-h-hhhh
Q 003886 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG-FLTTHLIGQAPD-KFVAAAARNPLCNLALMVGTTDIPDW-C-YVES 725 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG-~~a~~~~~~~p~-~~~a~v~~~pv~~~~~~~~~~~~~~~-~-~~~~ 725 (789)
.+.+|+..+++++.++. ...++..+|.|+|| +++.+++-+..+ ...|+++.+...|+..-...-+...+ . |...
T Consensus 129 G~t~D~~~~l~~l~~~~--~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~~~~~l~~~~s~~ly~r~ 206 (345)
T COG0429 129 GETEDIRFFLDWLKARF--PPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEACAYRLDSGFSLRLYSRY 206 (345)
T ss_pred cchhHHHHHHHHHHHhC--CCCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHHHHHHhcCchhhhhhHHH
Confidence 45689999999999873 46789999999999 556665543222 34555555444444211111111111 0 0000
Q ss_pred ------------------------------------ccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCC
Q 003886 726 ------------------------------------YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 769 (789)
Q Consensus 726 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~ 769 (789)
|-........+.+ +..+.|+..|.+..+.+|.+|+||||..+
T Consensus 207 l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~--da~dYYr~aSs~~~L~~Ir~PtLii~A~D 284 (345)
T COG0429 207 LLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFA--DAEDYYRQASSLPLLPKIRKPTLIINAKD 284 (345)
T ss_pred HHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCC--cHHHHHHhccccccccccccceEEEecCC
Confidence 0000001112222 44567888899999999999999999999
Q ss_pred CCCCChHHH
Q 003886 770 DLRVPVSNG 778 (789)
Q Consensus 770 D~~vp~~~~ 778 (789)
|++++++..
T Consensus 285 DP~~~~~~i 293 (345)
T COG0429 285 DPFMPPEVI 293 (345)
T ss_pred CCCCChhhC
Confidence 999988543
|
|
| >PLN02965 Probable pheophorbidase | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-12 Score=134.41 Aligned_cols=101 Identities=23% Similarity=0.271 Sum_probs=75.7
Q ss_pred EEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC-cc
Q 003886 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP-SK 672 (789)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~-~r 672 (789)
.||++||.+.+ ...|......|++.||.|+++|+|| +|.+.... . ....++++.+.+..+++. ++. ++
T Consensus 5 ~vvllHG~~~~--~~~w~~~~~~L~~~~~~via~Dl~G---~G~S~~~~--~--~~~~~~~~a~dl~~~l~~--l~~~~~ 73 (255)
T PLN02965 5 HFVFVHGASHG--AWCWYKLATLLDAAGFKSTCVDLTG---AGISLTDS--N--TVSSSDQYNRPLFALLSD--LPPDHK 73 (255)
T ss_pred EEEEECCCCCC--cCcHHHHHHHHhhCCceEEEecCCc---CCCCCCCc--c--ccCCHHHHHHHHHHHHHh--cCCCCC
Confidence 49999997764 4567777888989999999999998 55543211 1 123355555555555554 333 58
Q ss_pred EEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 673 v~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
+.++||||||.+++.++.++|++++++|+.++.
T Consensus 74 ~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~ 106 (255)
T PLN02965 74 VILVGHSIGGGSVTEALCKFTDKISMAIYVAAA 106 (255)
T ss_pred EEEEecCcchHHHHHHHHhCchheeEEEEEccc
Confidence 999999999999999999999999999998865
|
|
| >TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.8e-13 Score=137.01 Aligned_cols=183 Identities=16% Similarity=0.237 Sum_probs=110.8
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
..|+||++||.+.+ ...|......|. .||.|+++|+|| +|.+... ......++..+.+..+++. ++.
T Consensus 12 ~~~~li~~hg~~~~--~~~~~~~~~~l~-~~~~v~~~d~~G---~G~s~~~-----~~~~~~~~~~~~~~~~i~~--~~~ 78 (251)
T TIGR02427 12 GAPVLVFINSLGTD--LRMWDPVLPALT-PDFRVLRYDKRG---HGLSDAP-----EGPYSIEDLADDVLALLDH--LGI 78 (251)
T ss_pred CCCeEEEEcCcccc--hhhHHHHHHHhh-cccEEEEecCCC---CCCCCCC-----CCCCCHHHHHHHHHHHHHH--hCC
Confidence 56899999996553 445655666664 689999999998 4544211 1123466666666666665 356
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh---hh---cCCCCCcch-hhh-hccCccccccCCCCChhh
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL---MV---GTTDIPDWC-YVE-SYGSKGKDSFTESPSVED 742 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~---~~---~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~ 742 (789)
+++.++|||+||++++.++.++|++++++|+.++...+.. .. ......... ... .........+.. .....
T Consensus 79 ~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 157 (251)
T TIGR02427 79 ERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFRE-AHPAR 157 (251)
T ss_pred CceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHccccccc-CChHH
Confidence 7899999999999999999999999999988876432110 00 000000000 000 000000000000 00000
Q ss_pred -------------------HHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 743 -------------------LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 743 -------------------~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
...+...+....+.++++|+|+++|++|..+|.+...++.+.+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~~ 221 (251)
T TIGR02427 158 LDLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTPPELVREIADLVPG 221 (251)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhCCC
Confidence 001111222334678899999999999999999999999888764
|
Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. |
| >PLN02824 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-12 Score=137.53 Aligned_cols=107 Identities=14% Similarity=0.142 Sum_probs=79.4
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCC-C-CCcccHHHHHHHHHHHHHcCCCC
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG-K-VGSQDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~-~-~~~~~~~D~~~~i~~l~~~~~~d 669 (789)
.|.||++||.+.+ ...|......|+.. |.|+++|+|| +|.+....... . .....++++.+.+..+++. ..
T Consensus 29 ~~~vlllHG~~~~--~~~w~~~~~~L~~~-~~vi~~DlpG---~G~S~~~~~~~~~~~~~~~~~~~a~~l~~~l~~--l~ 100 (294)
T PLN02824 29 GPALVLVHGFGGN--ADHWRKNTPVLAKS-HRVYAIDLLG---YGYSDKPNPRSAPPNSFYTFETWGEQLNDFCSD--VV 100 (294)
T ss_pred CCeEEEECCCCCC--hhHHHHHHHHHHhC-CeEEEEcCCC---CCCCCCCccccccccccCCHHHHHHHHHHHHHH--hc
Confidence 3789999997764 56788788888876 6999999998 55543221100 0 1134566766666666654 23
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
.+++.|+|||+||++++.++.++|++++++|+.++..
T Consensus 101 ~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~ 137 (294)
T PLN02824 101 GDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISL 137 (294)
T ss_pred CCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCc
Confidence 4789999999999999999999999999999998753
|
|
| >COG4099 Predicted peptidase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.2e-13 Score=131.35 Aligned_cols=164 Identities=19% Similarity=0.162 Sum_probs=114.6
Q ss_pred CCCeeEEEEEEecCCCCCCCCC-cEEEEEcCCCCCCCchhhHHHHH-------HHHHCCcEEEEEcCCCCCCCCchhhcc
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCD-PLIVVLHGGPHSVSLSSYSKSLA-------FLSSVGYSLLIVNYRGSLGFGEEALQS 642 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~-P~vv~~HGg~~~~~~~~~~~~~~-------~la~~Gy~V~~~d~rGs~G~G~~~~~~ 642 (789)
.-|.++...+|.|+++.++++| |+|+|+||++...... .....+ ..-+.++.|++|.|- +=+-...
T Consensus 169 ~tgneLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~dn-~~~l~sg~gaiawa~pedqcfVlAPQy~--~if~d~e--- 242 (387)
T COG4099 169 STGNELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSDN-DKVLSSGIGAIAWAGPEDQCFVLAPQYN--PIFADSE--- 242 (387)
T ss_pred ccCceeeEEEecccccCCCCccccEEEEEecCCCCCchh-hhhhhcCccceeeecccCceEEEccccc--ccccccc---
Confidence 3577899999999999999998 9999999977653322 211110 112345677887752 1111100
Q ss_pred CCCCCCcccHHHHHHHHH-HHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcch
Q 003886 643 LPGKVGSQDVNDVLTAID-HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC 721 (789)
Q Consensus 643 ~~~~~~~~~~~D~~~~i~-~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~ 721 (789)
+............++ -+.++..||..||.++|.|+||+.+..++.++|+.|+|++.++|--+-
T Consensus 243 ---~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~------------- 306 (387)
T COG4099 243 ---EKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDR------------- 306 (387)
T ss_pred ---cccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCch-------------
Confidence 111112334455555 556677899999999999999999999999999999999998874320
Q ss_pred hhhhccCccccccCCCCChhhHHHHHhcCccccCCCC-CCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 722 YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
...++.+ ++|+.++|+.+|..+|.+++.-+|+.|+
T Consensus 307 ------------------------------v~lv~~lk~~piWvfhs~dDkv~Pv~nSrv~y~~lk 342 (387)
T COG4099 307 ------------------------------VYLVRTLKKAPIWVFHSSDDKVIPVSNSRVLYERLK 342 (387)
T ss_pred ------------------------------hhhhhhhccCceEEEEecCCCccccCcceeehHHHH
Confidence 0111222 4799999999999999999998888775
|
|
| >TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.6e-12 Score=132.51 Aligned_cols=104 Identities=17% Similarity=0.198 Sum_probs=77.5
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
+.|+||++||.+++ ...|......|++ +|.|+++|+|| +|.+.... .....++++.+.+..+++. .+.
T Consensus 27 ~~~~vv~~hG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G---~G~S~~~~----~~~~~~~~~~~~l~~~i~~--~~~ 94 (278)
T TIGR03056 27 AGPLLLLLHGTGAS--THSWRDLMPPLAR-SFRVVAPDLPG---HGFTRAPF----RFRFTLPSMAEDLSALCAA--EGL 94 (278)
T ss_pred CCCeEEEEcCCCCC--HHHHHHHHHHHhh-CcEEEeecCCC---CCCCCCcc----ccCCCHHHHHHHHHHHHHH--cCC
Confidence 35889999997654 5567667777755 69999999998 55543211 1123466666666666665 345
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
++++|+|||+||.+++.++.++|++++++|+.++..
T Consensus 95 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~ 130 (278)
T TIGR03056 95 SPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAAL 130 (278)
T ss_pred CCceEEEECccHHHHHHHHHhCCcccceEEEEcCcc
Confidence 678999999999999999999999999999887754
|
Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity. |
| >PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.1e-12 Score=139.73 Aligned_cols=123 Identities=16% Similarity=0.213 Sum_probs=85.6
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH-HHHHHH---HCCcEEEEEcCCCCCCCCchhhccCC
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLS---SVGYSLLIVNYRGSLGFGEEALQSLP 644 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-~~~~la---~~Gy~V~~~d~rGs~G~G~~~~~~~~ 644 (789)
.+..|.+++.....|.+ +...|.||++||.+.+ ...|.. .+..|+ +.+|.|+++|+|| +|.+.... .
T Consensus 181 ~~~~~~~l~~~~~gp~~---~~~k~~VVLlHG~~~s--~~~W~~~~~~~L~~~~~~~yrVia~Dl~G---~G~S~~p~-~ 251 (481)
T PLN03087 181 LSSSNESLFVHVQQPKD---NKAKEDVLFIHGFISS--SAFWTETLFPNFSDAAKSTYRLFAVDLLG---FGRSPKPA-D 251 (481)
T ss_pred EeeCCeEEEEEEecCCC---CCCCCeEEEECCCCcc--HHHHHHHHHHHHHHHhhCCCEEEEECCCC---CCCCcCCC-C
Confidence 34455778877777752 2345789999997764 345543 224444 4799999999998 56553211 1
Q ss_pred CCCCcccHHHHHHHH-HHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 645 GKVGSQDVNDVLTAI-DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 645 ~~~~~~~~~D~~~~i-~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
....+++..+.+ ..+++. .+.+++.++|||+||++++.++.++|++++++|+.+|.
T Consensus 252 ---~~ytl~~~a~~l~~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~ 308 (481)
T PLN03087 252 ---SLYTLREHLEMIERSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPP 308 (481)
T ss_pred ---CcCCHHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCC
Confidence 123455665555 345554 35678999999999999999999999999999999864
|
|
| >PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-13 Score=137.24 Aligned_cols=182 Identities=20% Similarity=0.301 Sum_probs=113.7
Q ss_pred EEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEE
Q 003886 595 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVT 674 (789)
Q Consensus 595 vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~ 674 (789)
||++||.+.+ ...|......| ++||.|+++|+|| +|.+.... ......+++..+.+..+++. +..+++.
T Consensus 1 vv~~hG~~~~--~~~~~~~~~~l-~~~~~v~~~d~~G---~G~s~~~~---~~~~~~~~~~~~~l~~~l~~--~~~~~~~ 69 (228)
T PF12697_consen 1 VVFLHGFGGS--SESWDPLAEAL-ARGYRVIAFDLPG---HGRSDPPP---DYSPYSIEDYAEDLAELLDA--LGIKKVI 69 (228)
T ss_dssp EEEE-STTTT--GGGGHHHHHHH-HTTSEEEEEECTT---STTSSSHS---SGSGGSHHHHHHHHHHHHHH--TTTSSEE
T ss_pred eEEECCCCCC--HHHHHHHHHHH-hCCCEEEEEecCC---cccccccc---ccCCcchhhhhhhhhhcccc--ccccccc
Confidence 7899997775 46777788888 5899999999998 55443221 12234466666666666665 3447899
Q ss_pred EEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhc----CCCCC---cch--hhhhccCccccccCCCCCh-----
Q 003886 675 VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG----TTDIP---DWC--YVESYGSKGKDSFTESPSV----- 740 (789)
Q Consensus 675 l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~----~~~~~---~~~--~~~~~~~~~~~~~~~~~~~----- 740 (789)
++|||+||.+++.++.++|++++++|+.+|......... ..-.. .+. ....+..............
T Consensus 70 lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (228)
T PF12697_consen 70 LVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIR 149 (228)
T ss_dssp EEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999875432110 00000 000 0000000000000000000
Q ss_pred ---hhH-HHH----HhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 741 ---EDL-TRF----HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 741 ---~~~-~~~----~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
... ..+ ...+....+.++++|+++++|++|..++.+...++.+.+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~~~ 204 (228)
T PF12697_consen 150 SSRRALAEYLRSNLWQADLSEALPRIKVPVLVIHGEDDPIVPPESAEELADKLPN 204 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGSSSEEEEEEETTSSSSHHHHHHHHHHHSTT
T ss_pred ccccccccccccccccccccccccccCCCeEEeecCCCCCCCHHHHHHHHHHCCC
Confidence 000 001 12233345778899999999999999999999999887764
|
... |
| >PRK10673 acyl-CoA esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-12 Score=131.35 Aligned_cols=187 Identities=17% Similarity=0.168 Sum_probs=108.0
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCC
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (789)
.....|.||++||.+++ ...|......|+ .+|.|+++|+|| +|.+... . ..++++..+-+..+++.
T Consensus 12 ~~~~~~~iv~lhG~~~~--~~~~~~~~~~l~-~~~~vi~~D~~G---~G~s~~~---~---~~~~~~~~~d~~~~l~~-- 77 (255)
T PRK10673 12 NPHNNSPIVLVHGLFGS--LDNLGVLARDLV-NDHDIIQVDMRN---HGLSPRD---P---VMNYPAMAQDLLDTLDA-- 77 (255)
T ss_pred CCCCCCCEEEECCCCCc--hhHHHHHHHHHh-hCCeEEEECCCC---CCCCCCC---C---CCCHHHHHHHHHHHHHH--
Confidence 34567889999997664 445666666665 469999999998 5544321 1 12344444433333333
Q ss_pred CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc--cchh----hh---h-c--CCCCCcchh-hh----hccCcc
Q 003886 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL--CNLA----LM---V-G--TTDIPDWCY-VE----SYGSKG 730 (789)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv--~~~~----~~---~-~--~~~~~~~~~-~~----~~~~~~ 730 (789)
+..+++.|+|||+||.+++.++.++|++++++|+.++. .... .+ . . ......+.. .. .+....
T Consensus 78 l~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (255)
T PRK10673 78 LQIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLNEEG 157 (255)
T ss_pred cCCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcCCHH
Confidence 34567999999999999999999999999999987532 1100 00 0 0 000000000 00 000000
Q ss_pred -----ccccCCCC----ChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 731 -----KDSFTESP----SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 731 -----~~~~~~~~----~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
...+.... .......+........+.++++|+|+++|++|..++.+.+..+.+.+++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~~~ 224 (255)
T PRK10673 158 VIQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQFPQA 224 (255)
T ss_pred HHHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCCHHHHHHHHHhCCCc
Confidence 00000000 00001112222222346678999999999999999999999988877653
|
|
| >PRK11460 putative hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.9e-12 Score=129.43 Aligned_cols=153 Identities=13% Similarity=0.166 Sum_probs=104.6
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCC----CCCchhhccCCCCCCccc-------HHHHHH
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSL----GFGEEALQSLPGKVGSQD-------VNDVLT 657 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~----G~G~~~~~~~~~~~~~~~-------~~D~~~ 657 (789)
....|+||++||.+.+ ...|......|+..++.+..+.++|.. +.|..|... .+...... .+.+.+
T Consensus 13 ~~~~~~vIlLHG~G~~--~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~-~~~~~~~~~~~~~~~~~~l~~ 89 (232)
T PRK11460 13 KPAQQLLLLFHGVGDN--PVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSV-QGITEDNRQARVAAIMPTFIE 89 (232)
T ss_pred CCCCcEEEEEeCCCCC--hHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccC-CCCCccchHHHHHHHHHHHHH
Confidence 4567999999996664 556777778888877666666666521 123333211 11111111 233445
Q ss_pred HHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCC
Q 003886 658 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTES 737 (789)
Q Consensus 658 ~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (789)
.++++.++..++.+||+++|+|+||.+++.++.++|+.+.++|+.++... . .
T Consensus 90 ~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~-----------~-----------------~ 141 (232)
T PRK11460 90 TVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYA-----------S-----------------L 141 (232)
T ss_pred HHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccccc-----------c-----------------c
Confidence 56666666668889999999999999999999888988888877665310 0 0
Q ss_pred CChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 738 PSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 738 ~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
+. ....++|+|++||++|.+||++.+.++++.|+.
T Consensus 142 ~~---------------~~~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~ 176 (232)
T PRK11460 142 PE---------------TAPTATTIHLIHGGEDPVIDVAHAVAAQEALIS 176 (232)
T ss_pred cc---------------cccCCCcEEEEecCCCCccCHHHHHHHHHHHHH
Confidence 00 012368999999999999999999999998864
|
|
| >PRK10162 acetyl esterase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.6e-12 Score=132.87 Aligned_cols=184 Identities=15% Similarity=0.116 Sum_probs=120.4
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc-hhhHHHHHHHHH-CCcEEEEEcCCCCCCCCchhhccCCCCCCc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~~~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~ 649 (789)
+| .+.+.+|.|. ....|+||++|||++.... ..+...+..|+. .|+.|+++|||.++++ ...
T Consensus 66 ~g-~i~~~~y~P~----~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~-----------~~p 129 (318)
T PRK10162 66 YG-QVETRLYYPQ----PDSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA-----------RFP 129 (318)
T ss_pred CC-ceEEEEECCC----CCCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC-----------CCC
Confidence 44 5888999985 2346999999998875433 345556777776 6999999999986542 112
Q ss_pred ccHHHHHHHHHHHHHc---CCCCCccEEEEEcCccHHHHHHHHHhC------CCceeEEEEeCCccchhhhhcCCCCCcc
Q 003886 650 QDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCNLALMVGTTDIPDW 720 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~~~~~------p~~~~a~v~~~pv~~~~~~~~~~~~~~~ 720 (789)
..++|+.++++|+.++ -.+|.+||+|+|+|+||.+++.++.+. +.+++++|+.+|+.++... +.+
T Consensus 130 ~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~~~~------~s~ 203 (318)
T PRK10162 130 QAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLRDS------VSR 203 (318)
T ss_pred CcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCCCCC------hhH
Confidence 3478999999999764 237899999999999999999988642 3578999999998874211 000
Q ss_pred hhhhhccCccccccCCCCChhhHHHH----H-----hcCcccc--CCCC---CCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 721 CYVESYGSKGKDSFTESPSVEDLTRF----H-----SKSPISH--ISKV---KTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~sp~~~--~~~i---~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
. .++. .+... ..+..+.+ . ..+|... ...+ -.|++|++|+.|..+ .++..++++|+
T Consensus 204 ~---~~~~----~~~~l-~~~~~~~~~~~y~~~~~~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L~--de~~~~~~~L~ 273 (318)
T PRK10162 204 R---LLGG----VWDGL-TQQDLQMYEEAYLSNDADRESPYYCLFNNDLTRDVPPCFIAGAEFDPLL--DDSRLLYQTLA 273 (318)
T ss_pred H---HhCC----Ccccc-CHHHHHHHHHHhCCCccccCCcccCcchhhhhcCCCCeEEEecCCCcCc--ChHHHHHHHHH
Confidence 0 0000 00000 00111111 0 1122211 1223 369999999999986 48889998886
Q ss_pred C
Q 003886 787 F 787 (789)
Q Consensus 787 ~ 787 (789)
.
T Consensus 274 ~ 274 (318)
T PRK10162 274 A 274 (318)
T ss_pred H
Confidence 4
|
|
| >TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-12 Score=133.47 Aligned_cols=109 Identities=16% Similarity=0.192 Sum_probs=76.8
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
+.|.||++||++++. ...|......+.+.||.|+++|+|| +|.+..... ......++++.+.+..+++. .+.
T Consensus 24 ~~~~vl~~hG~~g~~-~~~~~~~~~~l~~~g~~vi~~d~~G---~G~s~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~ 95 (288)
T TIGR01250 24 EKIKLLLLHGGPGMS-HEYLENLRELLKEEGREVIMYDQLG---CGYSDQPDD--SDELWTIDYFVDELEEVREK--LGL 95 (288)
T ss_pred CCCeEEEEcCCCCcc-HHHHHHHHHHHHhcCCEEEEEcCCC---CCCCCCCCc--ccccccHHHHHHHHHHHHHH--cCC
Confidence 357889999987652 2233344445556699999999998 454432111 11013466666666666665 455
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
+++.++|||+||.+++.++..+|++++++|+.+++..
T Consensus 96 ~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 132 (288)
T TIGR01250 96 DKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDS 132 (288)
T ss_pred CcEEEEEeehHHHHHHHHHHhCccccceeeEeccccc
Confidence 6799999999999999999999999999999887543
|
This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase |
| >TIGR01607 PST-A Plasmodium subtelomeric family (PST-A) | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.4e-12 Score=134.31 Aligned_cols=131 Identities=18% Similarity=0.263 Sum_probs=85.9
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch--------------------hh----HHHHHHHHHCCcEE
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--------------------SY----SKSLAFLSSVGYSL 624 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~--------------------~~----~~~~~~la~~Gy~V 624 (789)
.+.||..|....+.|+ .+..+|+++||........ .| ...+..|+++||.|
T Consensus 3 ~~~~g~~l~~~~~~~~-----~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G~~V 77 (332)
T TIGR01607 3 RNKDGLLLKTYSWIVK-----NAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNGYSV 77 (332)
T ss_pred cCCCCCeEEEeeeecc-----CCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCCCcE
Confidence 4568888988888774 3568999999955443211 11 24578999999999
Q ss_pred EEEcCCCCCCCCchhhc-cCCCCCC--cccHHHHHHHHHHHHHc------------------CCCCCccEEEEEcCccHH
Q 003886 625 LIVNYRGSLGFGEEALQ-SLPGKVG--SQDVNDVLTAIDHVIDM------------------GLANPSKVTVVGGSHGGF 683 (789)
Q Consensus 625 ~~~d~rGs~G~G~~~~~-~~~~~~~--~~~~~D~~~~i~~l~~~------------------~~~d~~rv~l~G~S~GG~ 683 (789)
+++|.|| +|.+... ...+... ..-++|+.+.++.+.+. ..-+..++.|+||||||.
T Consensus 78 ~~~D~rG---HG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~ 154 (332)
T TIGR01607 78 YGLDLQG---HGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGN 154 (332)
T ss_pred EEecccc---cCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccH
Confidence 9999998 4433211 1111111 11246677777766541 011145799999999999
Q ss_pred HHHHHHHhCCC--------ceeEEEEeCCccc
Q 003886 684 LTTHLIGQAPD--------KFVAAAARNPLCN 707 (789)
Q Consensus 684 ~a~~~~~~~p~--------~~~a~v~~~pv~~ 707 (789)
+++.++..+++ .++++|+.+|...
T Consensus 155 i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~ 186 (332)
T TIGR01607 155 IALRLLELLGKSNENNDKLNIKGCISLSGMIS 186 (332)
T ss_pred HHHHHHHHhccccccccccccceEEEeccceE
Confidence 99988765432 5889998888754
|
These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-10 Score=122.11 Aligned_cols=247 Identities=15% Similarity=0.100 Sum_probs=140.2
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
....+|+|||+.++.....+ ..++.++ .+++..+.+...... ..+.|+|||+.++.....
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~---~~v~~~d~~~~~~~~~~~~~~~~----------~~~~~~~~g~~l~~~~~~------ 93 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDS---DTIQVIDLATGEVIGTLPSGPDP----------ELFALHPNGKILYIANED------ 93 (300)
T ss_pred CCceEECCCCCEEEEEECCC---CeEEEEECCCCcEEEeccCCCCc----------cEEEECCCCCEEEEEcCC------
Confidence 45688999999876554322 1244333 344443333222222 468899999977654321
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~ 314 (789)
...|.+||+.+++.... .+.......+.|+|||+. ++
T Consensus 94 -------------------------------------~~~l~~~d~~~~~~~~~--~~~~~~~~~~~~~~dg~~----l~ 130 (300)
T TIGR03866 94 -------------------------------------DNLVTVIDIETRKVLAE--IPVGVEPEGMAVSPDGKI----VV 130 (300)
T ss_pred -------------------------------------CCeEEEEECCCCeEEeE--eeCCCCcceEEECCCCCE----EE
Confidence 24689999988754333 232334567899999997 77
Q ss_pred EEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCC
Q 003886 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 394 (789)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~ 394 (789)
+.... ...++.+|. .+++...............|+|||++|++.+..+
T Consensus 131 ~~~~~--------------~~~~~~~d~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~- 178 (300)
T TIGR03866 131 NTSET--------------TNMAHFIDT-----------------KTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIG- 178 (300)
T ss_pred EEecC--------------CCeEEEEeC-----------------CCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCC-
Confidence 65521 113555676 3333322111122345689999999887665332
Q ss_pred CCCCCccccceeEEeecCCCCCCC-cccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 395 VDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 395 ~~~g~~~~~~~L~~~d~~~~~~~~-~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
..+++||+.+++... +.... + ...++ ......+.|+|||+.+++..... ..+..+
T Consensus 179 ---------~~v~i~d~~~~~~~~~~~~~~---------~--~~~~~--~~~~~~i~~s~dg~~~~~~~~~~--~~i~v~ 234 (300)
T TIGR03866 179 ---------GTVSVIDVATRKVIKKITFEI---------P--GVHPE--AVQPVGIKLTKDGKTAFVALGPA--NRVAVV 234 (300)
T ss_pred ---------CEEEEEEcCcceeeeeeeecc---------c--ccccc--cCCccceEECCCCCEEEEEcCCC--CeEEEE
Confidence 358999998754321 11000 0 00000 00123567899999876654333 347777
Q ss_pred ECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 474 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 474 dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
|+.++++..............|+++|+.|+....... .|.+.|+.+.
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~---~i~v~d~~~~ 281 (300)
T TIGR03866 235 DAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSN---DVSVIDVAAL 281 (300)
T ss_pred ECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCC---eEEEEECCCC
Confidence 8888887654332333345678999998765543222 3777776543
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-11 Score=126.33 Aligned_cols=314 Identities=17% Similarity=0.188 Sum_probs=163.6
Q ss_pred ecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003886 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (789)
Q Consensus 102 ~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (789)
+.+.+||+++.|..+. ....+++++++ ..++++|||..+- .......+||+++.|+|+.+.. ++
T Consensus 41 ~~ft~dG~kllF~s~~------dg~~nly~lDL--~t~~i~QLTdg~g----~~~~g~~~s~~~~~~~Yv~~~~----~l 104 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDF------DGNRNLYLLDL--ATGEITQLTDGPG----DNTFGGFLSPDDRALYYVKNGR----SL 104 (386)
T ss_dssp --B-TTS-EEEEEE-T------TSS-EEEEEET--TT-EEEE---SS-----B-TTT-EE-TTSSEEEEEETTT----EE
T ss_pred CCcCCCCCEEEEEecc------CCCcceEEEEc--ccCEEEECccCCC----CCccceEEecCCCeEEEEECCC----eE
Confidence 3457999999997653 25678999887 4558899998651 1123467999999999987653 68
Q ss_pred EEEe-cCCceeEEEecCCCccccccCCCcccceee--cCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcce
Q 003886 182 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISW--NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 258 (789)
Q Consensus 182 ~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~w--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (789)
+.++ .+.+.+.+...+... .....| ..|+++++.+........+ ...|+.
T Consensus 105 ~~vdL~T~e~~~vy~~p~~~---------~g~gt~v~n~d~t~~~g~e~~~~d~~~---------------l~~~~~--- 157 (386)
T PF14583_consen 105 RRVDLDTLEERVVYEVPDDW---------KGYGTWVANSDCTKLVGIEISREDWKP---------------LTKWKG--- 157 (386)
T ss_dssp EEEETTT--EEEEEE--TTE---------EEEEEEEE-TTSSEEEEEEEEGGG--------------------SHHH---
T ss_pred EEEECCcCcEEEEEECCccc---------ccccceeeCCCccEEEEEEEeehhccC---------------ccccHH---
Confidence 8888 666666777766443 244566 4678888876543211000 000110
Q ss_pred eeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceE
Q 003886 259 WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (789)
Q Consensus 259 ~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~ 338 (789)
..+.+.......|+.+|+.+|+.+.+ .....-.+.+.+||..... |.|. .+..- ..-...||
T Consensus 158 ----f~e~~~a~p~~~i~~idl~tG~~~~v--~~~~~wlgH~~fsP~dp~l---i~fC-HEGpw--------~~Vd~RiW 219 (386)
T PF14583_consen 158 ----FREFYEARPHCRIFTIDLKTGERKVV--FEDTDWLGHVQFSPTDPTL---IMFC-HEGPW--------DLVDQRIW 219 (386)
T ss_dssp ----HHHHHHC---EEEEEEETTT--EEEE--EEESS-EEEEEEETTEEEE---EEEE-E-S-T--------TTSS-SEE
T ss_pred ----HHHHHhhCCCceEEEEECCCCceeEE--EecCccccCcccCCCCCCE---EEEe-ccCCc--------ceeceEEE
Confidence 02333344567899999999999888 5556667899999965541 5664 33321 11234799
Q ss_pred EEecccccchhhhhhhhcCCCCCCCeeecCCC--CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 339 AVRVSLYKSEASELELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~--~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
.++. +++..+.+... ...+...-|+|||+.|.|.+... | ....-|..+|+.+++.
T Consensus 220 ~i~~-----------------dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~----~--~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 220 TINT-----------------DGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTP----G--GQDFWIAGYDPDTGER 276 (386)
T ss_dssp EEET-----------------TS---EESS---TTEEEEEEEE-TTSS-EEEEEEET----T--T--EEEEEE-TTT--E
T ss_pred EEEc-----------------CCCcceeeecCCCCcccccccccCCCCEEEEEeecC----C--CCceEEEeeCCCCCCc
Confidence 9997 55655555433 23577889999999999987643 1 1234588888887654
Q ss_pred CCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe-------------CCeEEEEEEECCCCcEEEe
Q 003886 417 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-------------GSSQVIISVNVSSGELLRI 483 (789)
Q Consensus 417 ~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~-------------~~~~~l~~~dl~tg~~~~l 483 (789)
+.+... + ++ ..+--++||+.++=-+.+ .+..-||.+++.+++...|
T Consensus 277 ~~~~~~----------p--------~~---~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l 335 (386)
T PF14583_consen 277 RRLMEM----------P--------WC---SHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKL 335 (386)
T ss_dssp EEEEEE-------------------SE---EEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEE
T ss_pred eEEEeC----------C--------ce---eeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeee
Confidence 322111 0 00 012235677633211111 0123578889988887655
Q ss_pred cCCCC-----------CceeEEeeecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 484 TPAES-----------NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 484 t~~~~-----------~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
..... ..-.+.|+|||++++|.+.- .-++.||.+++.
T Consensus 336 ~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~-~G~~~vY~v~i~ 383 (386)
T PF14583_consen 336 ARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDM-EGPPAVYLVEIP 383 (386)
T ss_dssp EE-------BTTBSSTT----EE-TTSSEEEEEE-T-TSS-EEEEEE--
T ss_pred eeccCcceeecCCCccCCCCCccCCCCCEEEEECCC-CCCccEEEEeCc
Confidence 43221 12346899999999887755 566889998864
|
|
| >PRK11071 esterase YqiA; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.1e-12 Score=121.87 Aligned_cols=156 Identities=13% Similarity=0.106 Sum_probs=98.0
Q ss_pred cEEEEEcCCCCCCCchhhHH--HHHHHHH--CCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 003886 593 PLIVVLHGGPHSVSLSSYSK--SLAFLSS--VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~--~~~~la~--~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (789)
|.||++||.+.+ ...|.. ...+|.+ .+|.|+++|++| ++ ++..+.++.++++ .
T Consensus 2 p~illlHGf~ss--~~~~~~~~~~~~l~~~~~~~~v~~~dl~g---~~----------------~~~~~~l~~l~~~--~ 58 (190)
T PRK11071 2 STLLYLHGFNSS--PRSAKATLLKNWLAQHHPDIEMIVPQLPP---YP----------------ADAAELLESLVLE--H 58 (190)
T ss_pred CeEEEECCCCCC--cchHHHHHHHHHHHHhCCCCeEEeCCCCC---CH----------------HHHHHHHHHHHHH--c
Confidence 679999997665 334442 3355655 379999999987 32 2445555666654 3
Q ss_pred CCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhc-C-CCCCcchhhhhccCccccccCCCCChhhHHHH
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-T-TDIPDWCYVESYGSKGKDSFTESPSVEDLTRF 746 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (789)
+.+++.++|+|+||++++.++.++|. + +|+.+|..+...... . ....... .. +.+. ......+..
T Consensus 59 ~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~--~~~~~~~d~ 125 (190)
T PRK11071 59 GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDYLGENENPY----TG----QQYV--LESRHIYDL 125 (190)
T ss_pred CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHhcCCccccc----CC----CcEE--EcHHHHHHH
Confidence 45689999999999999999999883 3 467777666321110 0 0000000 00 0000 011233333
Q ss_pred HhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 747 HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 747 ~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
....+.. +. ..+|++++||++|+.||++++.++++..+
T Consensus 126 ~~~~~~~-i~-~~~~v~iihg~~De~V~~~~a~~~~~~~~ 163 (190)
T PRK11071 126 KVMQIDP-LE-SPDLIWLLQQTGDEVLDYRQAVAYYAACR 163 (190)
T ss_pred HhcCCcc-CC-ChhhEEEEEeCCCCcCCHHHHHHHHHhcc
Confidence 3333322 33 67889999999999999999999998764
|
|
| >TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.2e-12 Score=129.36 Aligned_cols=129 Identities=14% Similarity=0.126 Sum_probs=94.5
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--chhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~--~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~ 649 (789)
....+.++++.|. ..++.|+||++||.+.... ...|......|+++||.|+.+|+|| +|.+........+ .
T Consensus 8 ~~g~~~~~~~~p~---~~~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G---~G~S~g~~~~~~~-~ 80 (266)
T TIGR03101 8 PHGFRFCLYHPPV---AVGPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYG---CGDSAGDFAAARW-D 80 (266)
T ss_pred CCCcEEEEEecCC---CCCCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCC---CCCCCCccccCCH-H
Confidence 3445778888886 3345799999999654322 2344556778999999999999998 4443211111111 1
Q ss_pred ccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh
Q 003886 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~ 710 (789)
...+|+.++++++.+++ ..+|+|+|||+||.+++.++.++|++++++|+.+|+.....
T Consensus 81 ~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~ 138 (266)
T TIGR03101 81 VWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQ 138 (266)
T ss_pred HHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHH
Confidence 23588888999987763 57899999999999999999999999999999999876543
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily. |
| >PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.2e-13 Score=135.89 Aligned_cols=139 Identities=19% Similarity=0.234 Sum_probs=83.8
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC------c--h----hh----HHHHHHHHHCCcEEEEEcCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS------L--S----SY----SKSLAFLSSVGYSLLIVNYR 630 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~------~--~----~~----~~~~~~la~~Gy~V~~~d~r 630 (789)
.|....+..+.++++.|++. .++.|+||.+||-+.... . . .+ ......|+.+||+|+++|.+
T Consensus 92 ~f~~~p~~~vpaylLvPd~~--~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~GYVvla~D~~ 169 (390)
T PF12715_consen 92 EFNTTPGSRVPAYLLVPDGA--KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRGYVVLAPDAL 169 (390)
T ss_dssp EE--STTB-EEEEEEEETT----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTTSEEEEE--T
T ss_pred EEEccCCeeEEEEEEecCCC--CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCCCEEEEEccc
Confidence 45566788899999999853 678999999999332110 0 0 01 12356899999999999988
Q ss_pred CCCCCCchhhcc----------------CCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCC
Q 003886 631 GSLGFGEEALQS----------------LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 694 (789)
Q Consensus 631 Gs~G~G~~~~~~----------------~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~ 694 (789)
|-+..+.-.... +...+.....-|.+.+++||..++.+|++||+++|+|+||+.++++++.. +
T Consensus 170 g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaALD-d 248 (390)
T PF12715_consen 170 GFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAALD-D 248 (390)
T ss_dssp TSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH--T
T ss_pred cccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHHHHcc-h
Confidence 733222110000 00111222245677899999999999999999999999999999999974 6
Q ss_pred ceeEEEEeCCccch
Q 003886 695 KFVAAAARNPLCNL 708 (789)
Q Consensus 695 ~~~a~v~~~pv~~~ 708 (789)
+++++|+.+-++.+
T Consensus 249 RIka~v~~~~l~~~ 262 (390)
T PF12715_consen 249 RIKATVANGYLCTT 262 (390)
T ss_dssp T--EEEEES-B--H
T ss_pred hhHhHhhhhhhhcc
Confidence 89999887766543
|
|
| >PRK03592 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-11 Score=130.83 Aligned_cols=101 Identities=23% Similarity=0.304 Sum_probs=77.6
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.|.||++||.+.+ ...|...+..|++++ .|+++|+|| +|.+.... . .....+..+.+..+++. ++.+
T Consensus 27 g~~vvllHG~~~~--~~~w~~~~~~L~~~~-~via~D~~G---~G~S~~~~--~---~~~~~~~a~dl~~ll~~--l~~~ 93 (295)
T PRK03592 27 GDPIVFLHGNPTS--SYLWRNIIPHLAGLG-RCLAPDLIG---MGASDKPD--I---DYTFADHARYLDAWFDA--LGLD 93 (295)
T ss_pred CCEEEEECCCCCC--HHHHHHHHHHHhhCC-EEEEEcCCC---CCCCCCCC--C---CCCHHHHHHHHHHHHHH--hCCC
Confidence 3789999997764 567777788888885 999999998 66554321 1 13455555555555554 3457
Q ss_pred cEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
++.++|||+||.+++.++.++|++++++|+.++.
T Consensus 94 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~ 127 (295)
T PRK03592 94 DVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAI 127 (295)
T ss_pred CeEEEEECHHHHHHHHHHHhChhheeEEEEECCC
Confidence 8999999999999999999999999999999874
|
|
| >PLN00021 chlorophyllase | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-11 Score=128.92 Aligned_cols=118 Identities=23% Similarity=0.303 Sum_probs=91.3
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHH
Q 003886 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (789)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~ 653 (789)
..+.+.++.|. ..+++|+||++||+... ...|......|+++||.|+++|++|..+.+ ...+++
T Consensus 37 ~~~p~~v~~P~---~~g~~PvVv~lHG~~~~--~~~y~~l~~~Las~G~~VvapD~~g~~~~~-----------~~~~i~ 100 (313)
T PLN00021 37 PPKPLLVATPS---EAGTYPVLLFLHGYLLY--NSFYSQLLQHIASHGFIVVAPQLYTLAGPD-----------GTDEIK 100 (313)
T ss_pred CCceEEEEeCC---CCCCCCEEEEECCCCCC--cccHHHHHHHHHhCCCEEEEecCCCcCCCC-----------chhhHH
Confidence 45788899997 46789999999997653 446777788999999999999998732110 123456
Q ss_pred HHHHHHHHHHHc--------CCCCCccEEEEEcCccHHHHHHHHHhCCC-----ceeEEEEeCCccc
Q 003886 654 DVLTAIDHVIDM--------GLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCN 707 (789)
Q Consensus 654 D~~~~i~~l~~~--------~~~d~~rv~l~G~S~GG~~a~~~~~~~p~-----~~~a~v~~~pv~~ 707 (789)
|..++++|+.+. ..+|.++++|+|||+||++++.++.++++ +|+++|+.+|+..
T Consensus 101 d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g 167 (313)
T PLN00021 101 DAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDG 167 (313)
T ss_pred HHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeeccccc
Confidence 777777877652 23677899999999999999999998764 6889999988764
|
|
| >PLN02211 methyl indole-3-acetate methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=128.55 Aligned_cols=107 Identities=19% Similarity=0.259 Sum_probs=78.0
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (789)
++..|.||++||..++ ...|......|.++||.|+++|++| +|.+... . .....+++..+.+..+++.- .
T Consensus 15 ~~~~p~vvliHG~~~~--~~~w~~~~~~L~~~g~~vi~~dl~g---~G~s~~~--~--~~~~~~~~~~~~l~~~i~~l-~ 84 (273)
T PLN02211 15 NRQPPHFVLIHGISGG--SWCWYKIRCLMENSGYKVTCIDLKS---AGIDQSD--A--DSVTTFDEYNKPLIDFLSSL-P 84 (273)
T ss_pred cCCCCeEEEECCCCCC--cCcHHHHHHHHHhCCCEEEEecccC---CCCCCCC--c--ccCCCHHHHHHHHHHHHHhc-C
Confidence 3456899999997664 4567777888988999999999998 4543211 1 11134555555554444431 1
Q ss_pred CCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
..+++.|+||||||.++..++.++|++++++|..++.
T Consensus 85 ~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~ 121 (273)
T PLN02211 85 ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAAT 121 (273)
T ss_pred CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccc
Confidence 2478999999999999999999999999999998764
|
|
| >PRK10349 carboxylesterase BioH; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.8e-12 Score=130.20 Aligned_cols=179 Identities=22% Similarity=0.244 Sum_probs=107.5
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.|.||++||.+.+ ...|......|.+ .|.|+++|+|| +|.+.. . .....+++.+ .+.+. ..+
T Consensus 13 ~~~ivllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G---~G~S~~---~---~~~~~~~~~~---~l~~~---~~~ 74 (256)
T PRK10349 13 NVHLVLLHGWGLN--AEVWRCIDEELSS-HFTLHLVDLPG---FGRSRG---F---GALSLADMAE---AVLQQ---APD 74 (256)
T ss_pred CCeEEEECCCCCC--hhHHHHHHHHHhc-CCEEEEecCCC---CCCCCC---C---CCCCHHHHHH---HHHhc---CCC
Confidence 3569999996654 5677777777865 49999999998 555431 1 1223444443 33333 347
Q ss_pred cEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCC-cc-------------hhhhh------ccCccc
Q 003886 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP-DW-------------CYVES------YGSKGK 731 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~-~~-------------~~~~~------~~~~~~ 731 (789)
++.++|||+||++++.++.++|++++++|+.++.............. .+ ..... +.....
T Consensus 75 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (256)
T PRK10349 75 KAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETA 154 (256)
T ss_pred CeEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHccCchH
Confidence 89999999999999999999999999999987643211000000000 00 00000 000000
Q ss_pred c--------ccCC--CCChhh----HHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 732 D--------SFTE--SPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 732 ~--------~~~~--~~~~~~----~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
. .+.. .+.... ...+...+....+.++++|+|+++|++|..+|.+.+..+.+.+++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i~~~ 225 (256)
T PRK10349 155 RQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWPHS 225 (256)
T ss_pred HHHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhCCCC
Confidence 0 0000 000000 0112223333457889999999999999999999998888887764
|
|
| >KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-11 Score=123.00 Aligned_cols=110 Identities=21% Similarity=0.340 Sum_probs=85.9
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCC
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (789)
.....|+|+++||.|.. ..+|+.....|+++||.|+++|+|| ||.+... ...-...+..+...+..+++.
T Consensus 40 g~~~gP~illlHGfPe~--wyswr~q~~~la~~~~rviA~DlrG---yG~Sd~P---~~~~~Yt~~~l~~di~~lld~-- 109 (322)
T KOG4178|consen 40 GPGDGPIVLLLHGFPES--WYSWRHQIPGLASRGYRVIAPDLRG---YGFSDAP---PHISEYTIDELVGDIVALLDH-- 109 (322)
T ss_pred cCCCCCEEEEEccCCcc--chhhhhhhhhhhhcceEEEecCCCC---CCCCCCC---CCcceeeHHHHHHHHHHHHHH--
Confidence 34568999999999885 5577778889999999999999998 7776542 232334455555555555554
Q ss_pred CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
+..+|+.++||.+|++++..++..+|+++++.|+.+....
T Consensus 110 Lg~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~ 149 (322)
T KOG4178|consen 110 LGLKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFP 149 (322)
T ss_pred hccceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCC
Confidence 2368999999999999999999999999999999876544
|
|
| >TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.8e-12 Score=135.35 Aligned_cols=130 Identities=15% Similarity=0.187 Sum_probs=84.3
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch---------hhHHHH---HHHHHCCcEEEEEcCCCC-CCC-Cc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---------SYSKSL---AFLSSVGYSLLIVNYRGS-LGF-GE 637 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~---------~~~~~~---~~la~~Gy~V~~~d~rGs-~G~-G~ 637 (789)
+|..++...+-+.+ ....|.||++||.+++.... .|.... ..|...+|.|+++|+||. .|. +.
T Consensus 14 ~~~~~~y~~~g~~~---~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~ 90 (351)
T TIGR01392 14 SDVRVAYETYGTLN---AERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYGSTGP 90 (351)
T ss_pred CCceEEEEeccccC---CCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCCCCCC
Confidence 45566655554421 12347899999976643211 233332 255578899999999983 222 11
Q ss_pred hhhcc----CCCCCCcccHHHHHHHHHHHHHcCCCCCcc-EEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 638 EALQS----LPGKVGSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 638 ~~~~~----~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r-v~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
+.... ...+.....++|+.+.+..+++. +..++ +.|+|||+||++++.++.++|++++++|+.++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 162 (351)
T TIGR01392 91 SSINPGGRPYGSDFPLITIRDDVKAQKLLLDH--LGIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSA 162 (351)
T ss_pred CCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHH--cCCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCC
Confidence 11000 00012234577888777777765 34567 9999999999999999999999999999988754
|
This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. |
| >TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-11 Score=125.94 Aligned_cols=104 Identities=19% Similarity=0.294 Sum_probs=77.9
Q ss_pred cEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHH-HHHHHHcCCCCCc
Q 003886 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLANPS 671 (789)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d~~ 671 (789)
|+||++||.+++ ...|......|+ +||.|+++|+|| +|.+.. +......+++++... +..+++. .+.+
T Consensus 2 ~~vv~~hG~~~~--~~~~~~~~~~L~-~~~~v~~~d~~g---~G~s~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 70 (251)
T TIGR03695 2 PVLVFLHGFLGS--GADWQALIELLG-PHFRCLAIDLPG---HGSSQS---PDEIERYDFEEAAQDILATLLDQ--LGIE 70 (251)
T ss_pred CEEEEEcCCCCc--hhhHHHHHHHhc-ccCeEEEEcCCC---CCCCCC---CCccChhhHHHHHHHHHHHHHHH--cCCC
Confidence 789999997654 556777778887 899999999998 454421 111122345555554 5555554 4567
Q ss_pred cEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
++.++|||+||++++.++.++|++++++++.++...
T Consensus 71 ~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~ 106 (251)
T TIGR03695 71 PFFLVGYSMGGRIALYYALQYPERVQGLILESGSPG 106 (251)
T ss_pred eEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCC
Confidence 899999999999999999999999999999887643
|
This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. |
| >KOG1838 consensus Alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-11 Score=125.99 Aligned_cols=200 Identities=20% Similarity=0.212 Sum_probs=126.7
Q ss_pred ecCCCeeEEEEEEecCCC---CCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCC
Q 003886 569 TKGAQKPFEAIFVSSSHK---KDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 645 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~---~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~ 645 (789)
+-.||..+..-.+.+..- ......|+||++||-.++.....-......+.++||.|+++|.||.+|.--.. +.
T Consensus 99 ~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~LtT----pr 174 (409)
T KOG1838|consen 99 KTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKLTT----PR 174 (409)
T ss_pred EeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCccCC----Cc
Confidence 334666665555544422 11356799999999877654433344566777899999999999955432211 22
Q ss_pred CCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCC---CceeEEEEeCCccchh-hhhcCCCCCcch
Q 003886 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCNLA-LMVGTTDIPDWC 721 (789)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p---~~~~a~v~~~pv~~~~-~~~~~~~~~~~~ 721 (789)
-+....-+|+.++++++.++ ....++..+|.|+||.+.+.++++.. ...+|+++.+|+--.. .-.-......+.
T Consensus 175 ~f~ag~t~Dl~~~v~~i~~~--~P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~~~~~~~~~~~~~~~ 252 (409)
T KOG1838|consen 175 LFTAGWTEDLREVVNHIKKR--YPQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLLAASRSIETPLYRRF 252 (409)
T ss_pred eeecCCHHHHHHHHHHHHHh--CCCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchhhhhhhHHhcccchHH
Confidence 33334578999999999998 45678999999999999999988643 3556666666654220 000000011111
Q ss_pred hhhh----------------------------------ccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEe
Q 003886 722 YVES----------------------------------YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLG 767 (789)
Q Consensus 722 ~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G 767 (789)
|... |-........+.+ .-.+.|.+.|+..++++|++|+|+|+.
T Consensus 253 y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~--~~deYY~~aSs~~~v~~I~VP~L~ina 330 (409)
T KOG1838|consen 253 YNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFK--SVDEYYKKASSSNYVDKIKVPLLCINA 330 (409)
T ss_pred HHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCC--cHHHHHhhcchhhhcccccccEEEEec
Confidence 1110 0001111112222 234567788999999999999999999
Q ss_pred CCCCCCChH
Q 003886 768 AQDLRVPVS 776 (789)
Q Consensus 768 ~~D~~vp~~ 776 (789)
.+|+++|.+
T Consensus 331 ~DDPv~p~~ 339 (409)
T KOG1838|consen 331 ADDPVVPEE 339 (409)
T ss_pred CCCCCCCcc
Confidence 999999984
|
|
| >TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.8e-12 Score=131.96 Aligned_cols=119 Identities=18% Similarity=0.265 Sum_probs=81.1
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
.+|..++....- ..+.+.||++||++++... ......+...+|.|+++|+|| +|.+.... .....
T Consensus 12 ~~~~~l~y~~~g------~~~~~~lvllHG~~~~~~~---~~~~~~~~~~~~~vi~~D~~G---~G~S~~~~---~~~~~ 76 (306)
T TIGR01249 12 SDNHQLYYEQSG------NPDGKPVVFLHGGPGSGTD---PGCRRFFDPETYRIVLFDQRG---CGKSTPHA---CLEEN 76 (306)
T ss_pred CCCcEEEEEECc------CCCCCEEEEECCCCCCCCC---HHHHhccCccCCEEEEECCCC---CCCCCCCC---CcccC
Confidence 356666543321 1124568999998775322 122334556789999999998 55553211 11123
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
..+++.+.+..+++. ++.+++.++|||+||++++.++.++|++++++|+.++..
T Consensus 77 ~~~~~~~dl~~l~~~--l~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~ 130 (306)
T TIGR01249 77 TTWDLVADIEKLREK--LGIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFL 130 (306)
T ss_pred CHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHHChHhhhhheeecccc
Confidence 456777777777765 345789999999999999999999999999999887653
|
This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members. |
| >TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.6e-12 Score=129.28 Aligned_cols=178 Identities=20% Similarity=0.259 Sum_probs=105.3
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.|.||++||.+.+ ...|......|+ .+|.|+++|+|| +|.+... ...+++++.+. +.+. + .+
T Consensus 4 ~~~iv~~HG~~~~--~~~~~~~~~~l~-~~~~vi~~d~~G---~G~s~~~------~~~~~~~~~~~---~~~~--~-~~ 65 (245)
T TIGR01738 4 NVHLVLIHGWGMN--AEVFRCLDEELS-AHFTLHLVDLPG---HGRSRGF------GPLSLADAAEA---IAAQ--A-PD 65 (245)
T ss_pred CceEEEEcCCCCc--hhhHHHHHHhhc-cCeEEEEecCCc---CccCCCC------CCcCHHHHHHH---HHHh--C-CC
Confidence 3789999996553 456766677775 469999999998 5543211 12234444443 3333 2 36
Q ss_pred cEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCC-CCC-------------cch-hhh------hccCcc
Q 003886 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT-DIP-------------DWC-YVE------SYGSKG 730 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~-~~~-------------~~~-~~~------~~~~~~ 730 (789)
++.++|||+||++++.++.++|++++++|+.++...+....... ... .+. ... .+....
T Consensus 66 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (245)
T TIGR01738 66 PAIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLGTPT 145 (245)
T ss_pred CeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc
Confidence 89999999999999999999999999999887654221000000 000 000 000 000000
Q ss_pred cc--------cc--CCCCChhh----HHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 731 KD--------SF--TESPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 731 ~~--------~~--~~~~~~~~----~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.. .+ ...+.... ...+...+....+.++++|+|+++|++|..+|++....+.+.+++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~~ 216 (245)
T TIGR01738 146 ARQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLAPH 216 (245)
T ss_pred cchHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhCCC
Confidence 00 00 00000000 011111222234678999999999999999999999988888765
|
This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria. |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.8e-11 Score=119.97 Aligned_cols=279 Identities=12% Similarity=0.042 Sum_probs=164.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
..+....||++|++||..+.. ....+|.+..+++ .++...-.+.+..| ..+.||||.++|+-...++. .
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD--~Taiiw~v~~d~~-~kl~~tlvgh~~~V------~yi~wSPDdryLlaCg~~e~--~ 293 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKD--STAIIWIVVYDVH-FKLKKTLVGHSQPV------SYIMWSPDDRYLLACGFDEV--L 293 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCC--ceEEEEEEecCcc-eeeeeeeecccCce------EEEEECCCCCeEEecCchHh--e
Confidence 458889999999999987654 3345666665655 33333223334444 78999999999887665543 2
Q ss_pred CCccCCCCCCCCCCcCC-CCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003886 234 PTFSLGSTKGGSSDKDC-NSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (789)
..|+...+......+.. .--.....|-||.-...++..+.+++.||+++.......+.. .-.+..++.++||++
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr-~~~v~dlait~Dgk~---- 368 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR-DPKVHDLAITYDGKY---- 368 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc-cceeEEEEEcCCCcE----
Confidence 23443333222222221 122234578899766667888899999999987655443211 224678999999999
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
++.+. .+..|..++. ++...+.+......+.+...|.||++++..-.
T Consensus 369 vl~v~---------------~d~~i~l~~~-----------------e~~~dr~lise~~~its~~iS~d~k~~LvnL~- 415 (519)
T KOG0293|consen 369 VLLVT---------------VDKKIRLYNR-----------------EARVDRGLISEEQPITSFSISKDGKLALVNLQ- 415 (519)
T ss_pred EEEEe---------------cccceeeech-----------------hhhhhhccccccCceeEEEEcCCCcEEEEEcc-
Confidence 77776 2236777776 45555545555556888999999996544332
Q ss_pred CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (789)
+..+++||++.......-.+...-. | +-+-+|.--...++.+++.++ .+|.
T Consensus 416 ----------~qei~LWDl~e~~lv~kY~Ghkq~~--------------f---iIrSCFgg~~~~fiaSGSED~--kvyI 466 (519)
T KOG0293|consen 416 ----------DQEIHLWDLEENKLVRKYFGHKQGH--------------F---IIRSCFGGGNDKFIASGSEDS--KVYI 466 (519)
T ss_pred ----------cCeeEEeecchhhHHHHhhcccccc--------------e---EEEeccCCCCcceEEecCCCc--eEEE
Confidence 2359999997432221111211000 0 011233222224555554444 5777
Q ss_pred EECCCCcEEEecCCCC-CceeEEeeecCCEEEEEEeCCC
Q 003886 473 VNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVSSSPV 510 (789)
Q Consensus 473 ~dl~tg~~~~lt~~~~-~~~~~~~s~dg~~l~~~~ss~~ 510 (789)
++..+|++.....++. .+..+++.|....+++++++..
T Consensus 467 Whr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDg 505 (519)
T KOG0293|consen 467 WHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDG 505 (519)
T ss_pred EEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCC
Confidence 7888888776665554 3344455555555555554443
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.8e-12 Score=124.68 Aligned_cols=125 Identities=17% Similarity=0.210 Sum_probs=81.5
Q ss_pred CCccCceEEEEEccCCc--eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccc
Q 003886 268 AGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLY 345 (789)
Q Consensus 268 ~~~~~~~l~v~d~~~g~--~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 345 (789)
++..+..+|+|+....+ +.+. +....-+.++.||||++. |+..+.+ ..+.+++-.
T Consensus 341 SgsDd~tlflW~p~~~kkpi~rm--tgHq~lVn~V~fSPd~r~----IASaSFD---------------kSVkLW~g~-- 397 (480)
T KOG0271|consen 341 SGSDDFTLFLWNPFKSKKPITRM--TGHQALVNHVSFSPDGRY----IASASFD---------------KSVKLWDGR-- 397 (480)
T ss_pred EecCCceEEEecccccccchhhh--hchhhheeeEEECCCccE----EEEeecc---------------cceeeeeCC--
Confidence 34456789999875332 3344 233446789999999998 8887732 245555541
Q ss_pred cchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceee
Q 003886 346 KSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 425 (789)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~ 425 (789)
.+.-...+..+-..+...+||.|.+.|+..+.+. .|.+||+.+.+...-..+..+
T Consensus 398 --------------tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDs-----------TLKvw~V~tkKl~~DLpGh~D 452 (480)
T KOG0271|consen 398 --------------TGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDS-----------TLKVWDVRTKKLKQDLPGHAD 452 (480)
T ss_pred --------------CcchhhhhhhccceeEEEEeccCccEEEEcCCCc-----------eEEEEEeeeeeecccCCCCCc
Confidence 3444556666777899999999999777666443 589999887555322222211
Q ss_pred EEeeeeccCCCCCccccccCCCCCccccCCCEEE
Q 003886 426 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 459 (789)
Q Consensus 426 v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~ 459 (789)
.+..+.|+|||.++.
T Consensus 453 -------------------EVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 453 -------------------EVFAVDWSPDGQRVA 467 (480)
T ss_pred -------------------eEEEEEecCCCceee
Confidence 234567999999663
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-10 Score=116.73 Aligned_cols=334 Identities=13% Similarity=0.110 Sum_probs=191.6
Q ss_pred CceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEec---CCCCCCeEEEE
Q 003886 108 GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRN---PENESPIQFEL 184 (789)
Q Consensus 108 g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~---~~~~~~~~~~i 184 (789)
|.+|.|+... .||...+ ..++.+++|..- +-+..|.+||||+++||.+- .......+|.+
T Consensus 50 GD~IiFt~~D----------dlWe~sl--k~g~~~ritS~l-----GVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v 112 (668)
T COG4946 50 GDRIIFTCCD----------DLWEYSL--KDGKPLRITSGL-----GVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVV 112 (668)
T ss_pred CcEEEEEech----------HHHHhhh--ccCCeeEEeccc-----ceeccccCCCCCcEEEEEEEEecCCCccccEEEE
Confidence 6688887543 6788776 445667777653 45778999999999999541 12245578999
Q ss_pred e-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCC-----C-CCC---------CCc
Q 003886 185 W-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST-----K-GGS---------SDK 248 (789)
Q Consensus 185 ~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~-----~-~~~---------~~~ 248 (789)
. .+|+.+++|... .... .-.-|+|||+.|++.-.... -+-|...++ . ..+ ..+
T Consensus 113 ~~e~Ge~kRiTyfG-r~fT--------~VaG~~~dg~iiV~TD~~tP--F~q~~~lYkv~~dg~~~e~LnlGpathiv~~ 181 (668)
T COG4946 113 PSEDGEAKRITYFG-RRFT--------RVAGWIPDGEIIVSTDFHTP--FSQWTELYKVNVDGIKTEPLNLGPATHIVIK 181 (668)
T ss_pred eCCCCcEEEEEEec-cccc--------eeeccCCCCCEEEEeccCCC--cccceeeeEEccCCceeeeccCCceeeEEEe
Confidence 8 789999999872 2211 12459999998887533221 111211110 0 000 011
Q ss_pred CCCCCCCccee-eCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeee
Q 003886 249 DCNSWKGQGDW-EEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGI 327 (789)
Q Consensus 249 ~~~~~~~~~~~-~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~ 327 (789)
+...+.+...| -|+| ..|.+..+..||+-...+...+.+ ..-+..+..|..- |.+ |+|.++-++
T Consensus 182 dg~ivigRntydLP~W-K~YkGGtrGklWis~d~g~tFeK~--vdl~~~vS~PmIV--~~R----vYFlsD~eG------ 246 (668)
T COG4946 182 DGIIVIGRNTYDLPHW-KGYKGGTRGKLWISSDGGKTFEKF--VDLDGNVSSPMIV--GER----VYFLSDHEG------ 246 (668)
T ss_pred CCEEEEccCcccCccc-ccccCCccceEEEEecCCcceeee--eecCCCcCCceEE--cce----EEEEecccC------
Confidence 22222222222 3455 345566678888655444345554 2333344455443 446 899985443
Q ss_pred eeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeE
Q 003886 328 KYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLH 407 (789)
Q Consensus 328 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~ 407 (789)
-.+||.+|+ ++...++-|+.... ..-..+.|||+|+|...- +||
T Consensus 247 ------~GnlYSvdl-----------------dGkDlrrHTnFtdY-Y~R~~nsDGkrIvFq~~G------------dIy 290 (668)
T COG4946 247 ------VGNLYSVDL-----------------DGKDLRRHTNFTDY-YPRNANSDGKRIVFQNAG------------DIY 290 (668)
T ss_pred ------ccceEEecc-----------------CCchhhhcCCchhc-cccccCCCCcEEEEecCC------------cEE
Confidence 247999999 66666666654221 111246799999987643 366
Q ss_pred EeecCCCCCCCcccc--e-----------------------eeEEeeee-------------------------------
Q 003886 408 RIDWPTNGNFSSLEK--I-----------------------VDVIPVVQ------------------------------- 431 (789)
Q Consensus 408 ~~d~~~~~~~~~t~~--~-----------------------~~v~~~~~------------------------------- 431 (789)
++|.++.....+.-+ . .+.+.++.
T Consensus 291 lydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~ 370 (668)
T COG4946 291 LYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVD 370 (668)
T ss_pred EeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccC
Confidence 666544332211100 0 00000000
Q ss_pred ------ccCCCCCccccc-------------cCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC-Cce
Q 003886 432 ------CAEGDCFPGLYS-------------SSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFS 491 (789)
Q Consensus 432 ------~~~~~~f~g~~~-------------~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~-~~~ 491 (789)
...++++-|+|. ..+..+..++||+.+++. ..+..||.+|+++|+++.+-.... .+.
T Consensus 371 ~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vva---Ndr~el~vididngnv~~idkS~~~lIt 447 (668)
T COG4946 371 PEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVA---NDRFELWVIDIDNGNVRLIDKSEYGLIT 447 (668)
T ss_pred CcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEE---cCceEEEEEEecCCCeeEecccccceeE
Confidence 001122222332 123456678899877654 446689999999999998876653 455
Q ss_pred eEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 492 WSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 492 ~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
...+++++.+++|..-..--...|.+++..++
T Consensus 448 df~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 448 DFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred EEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 56889999999888765555555667776543
|
|
| >PLN02872 triacylglycerol lipase | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-11 Score=133.83 Aligned_cols=136 Identities=20% Similarity=0.215 Sum_probs=85.3
Q ss_pred eeecCCCeeEEEEEEecCCC-CCCCCCcEEEEEcCCCCCCCchhh----HHHHHHHHHCCcEEEEEcCCCCCC-CCchhh
Q 003886 567 NLTKGAQKPFEAIFVSSSHK-KDCSCDPLIVVLHGGPHSVSLSSY----SKSLAFLSSVGYSLLIVNYRGSLG-FGEEAL 640 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~-~~~~~~P~vv~~HGg~~~~~~~~~----~~~~~~la~~Gy~V~~~d~rGs~G-~G~~~~ 640 (789)
.++..||..|...-+.+.+. ....+.|.|+++||...+...... ......|+++||.|+++|.||.+. +|....
T Consensus 48 ~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~~~s~gh~~~ 127 (395)
T PLN02872 48 TIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGTRWSYGHVTL 127 (395)
T ss_pred EEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccccccccccCCCCC
Confidence 34556787776555533211 112346889999997654322110 123346889999999999999542 232221
Q ss_pred ccCCC-----CCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCC---ceeEEEEeCCcc
Q 003886 641 QSLPG-----KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLC 706 (789)
Q Consensus 641 ~~~~~-----~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~---~~~a~v~~~pv~ 706 (789)
..... .+......|+.++++++.+.. .+++.++|||+||.+++.++ .+|+ +++++++.+|+.
T Consensus 128 ~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~P~~ 197 (395)
T PLN02872 128 SEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLCPIS 197 (395)
T ss_pred CccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhcchh
Confidence 11111 121222469999999998652 46899999999999998655 4675 577777777764
|
|
| >PLN02679 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-11 Score=132.20 Aligned_cols=103 Identities=16% Similarity=0.261 Sum_probs=73.8
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.|.||++||.+.+ ...|...+..|++ +|.|+++|++| +|.+.... .. ...++++.+.+..+++. ...+
T Consensus 88 gp~lvllHG~~~~--~~~w~~~~~~L~~-~~~via~Dl~G---~G~S~~~~---~~-~~~~~~~a~~l~~~l~~--l~~~ 155 (360)
T PLN02679 88 GPPVLLVHGFGAS--IPHWRRNIGVLAK-NYTVYAIDLLG---FGASDKPP---GF-SYTMETWAELILDFLEE--VVQK 155 (360)
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCC---CCCCCCCC---Cc-cccHHHHHHHHHHHHHH--hcCC
Confidence 4789999997764 5577777777765 79999999998 66553211 11 22345555544444443 3457
Q ss_pred cEEEEEcCccHHHHHHHHH-hCCCceeEEEEeCCcc
Q 003886 672 KVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLC 706 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~-~~p~~~~a~v~~~pv~ 706 (789)
++.|+|||+||++++.++. ++|++++++|+.++..
T Consensus 156 ~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~ 191 (360)
T PLN02679 156 PTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAG 191 (360)
T ss_pred CeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCcc
Confidence 8999999999999998876 4699999999998753
|
|
| >COG0657 Aes Esterase/lipase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.6e-12 Score=133.13 Aligned_cols=195 Identities=19% Similarity=0.224 Sum_probs=125.4
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhH-H-HHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-K-SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~-~-~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
+..+...+|.| ......+.|+||++|||++........ . ....++..|+.|+++|||-.+.+ ....
T Consensus 61 ~~~~~~~~y~p-~~~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~-----------~~p~ 128 (312)
T COG0657 61 GDGVPVRVYRP-DRKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH-----------PFPA 128 (312)
T ss_pred CCceeEEEECC-CCCCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC-----------CCCc
Confidence 33466788888 222556799999999998865544333 3 34466789999999999975543 2234
Q ss_pred cHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhCCC----ceeEEEEeCCccchhhhhcCCCCCcchhh
Q 003886 651 DVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCYV 723 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~p~----~~~a~v~~~pv~~~~~~~~~~~~~~~~~~ 723 (789)
.++|+.+++.|+.++. .+|+++|+|+|+|.||.+++.++....+ ..++.++.+|.++... .......+...
T Consensus 129 ~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~--~~~~~~~~~~~ 206 (312)
T COG0657 129 ALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS--SAASLPGYGEA 206 (312)
T ss_pred hHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc--cccchhhcCCc
Confidence 5889999999999873 4899999999999999999998876433 5789999999988754 11111000000
Q ss_pred hhccC-----ccccccCCCCChhhHHHHHhcCcccc--CCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 724 ESYGS-----KGKDSFTESPSVEDLTRFHSKSPISH--ISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 724 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~sp~~~--~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
..+.. .....+..... +.. .-..+|+.. +.. -.|++|++|+.|...+ ++..+.++|+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~--~~~-~p~~spl~~~~~~~-lPP~~i~~a~~D~l~~--~~~~~a~~L~~ 271 (312)
T COG0657 207 DLLDAAAILAWFADLYLGAAP--DRE-DPEASPLASDDLSG-LPPTLIQTAEFDPLRD--EGEAYAERLRA 271 (312)
T ss_pred cccCHHHHHHHHHHHhCcCcc--ccC-CCccCccccccccC-CCCEEEEecCCCcchh--HHHHHHHHHHH
Confidence 00000 00000000000 000 012334332 334 5789999999999998 88888888764
|
|
| >PLN02578 hydrolase | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.5e-11 Score=130.32 Aligned_cols=100 Identities=20% Similarity=0.203 Sum_probs=68.1
Q ss_pred cEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCcc
Q 003886 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (789)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (789)
|.||++||.+.+ ...|......|+ ++|.|+++|++| +|.+.... ...+..+..+.+..+++. +..++
T Consensus 87 ~~vvliHG~~~~--~~~w~~~~~~l~-~~~~v~~~D~~G---~G~S~~~~-----~~~~~~~~a~~l~~~i~~--~~~~~ 153 (354)
T PLN02578 87 LPIVLIHGFGAS--AFHWRYNIPELA-KKYKVYALDLLG---FGWSDKAL-----IEYDAMVWRDQVADFVKE--VVKEP 153 (354)
T ss_pred CeEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEECCCC---CCCCCCcc-----cccCHHHHHHHHHHHHHH--hccCC
Confidence 568899996653 456666666675 469999999998 44433211 112333322222222222 12468
Q ss_pred EEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 673 v~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
+.++|||+||++++.++.++|++++++|+.++.
T Consensus 154 ~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~ 186 (354)
T PLN02578 154 AVLVGNSLGGFTALSTAVGYPELVAGVALLNSA 186 (354)
T ss_pred eEEEEECHHHHHHHHHHHhChHhcceEEEECCC
Confidence 999999999999999999999999999998764
|
|
| >PRK07581 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-11 Score=132.88 Aligned_cols=109 Identities=19% Similarity=0.108 Sum_probs=69.5
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHH---HHHHHCCcEEEEEcCCCCCCCCchhhccCC-CCCC-----cccH-HHHHHHHH
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSL---AFLSSVGYSLLIVNYRGSLGFGEEALQSLP-GKVG-----SQDV-NDVLTAID 660 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~---~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~-~~~~-----~~~~-~D~~~~i~ 660 (789)
+.|+||++||++++. ..|.... ..|...+|.|+++|+|| +|.+...... ..+. ...+ +|+.+...
T Consensus 40 ~~~~vll~~~~~~~~--~~~~~~~~~~~~l~~~~~~vi~~D~~G---~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (339)
T PRK07581 40 KDNAILYPTWYSGTH--QDNEWLIGPGRALDPEKYFIIIPNMFG---NGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHR 114 (339)
T ss_pred CCCEEEEeCCCCCCc--ccchhhccCCCccCcCceEEEEecCCC---CCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHH
Confidence 457788877765432 2232222 25666789999999998 5544321110 0111 1123 44444344
Q ss_pred HHHHcCCCCCccE-EEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 661 HVIDMGLANPSKV-TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 661 ~l~~~~~~d~~rv-~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
.+.+. ...+++ .|+|||+||++++.++.++|++++++|+.++..
T Consensus 115 ~l~~~--lgi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~ 159 (339)
T PRK07581 115 LLTEK--FGIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTA 159 (339)
T ss_pred HHHHH--hCCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCC
Confidence 45553 345784 799999999999999999999999999886543
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-10 Score=120.47 Aligned_cols=270 Identities=17% Similarity=0.154 Sum_probs=144.2
Q ss_pred CCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceee
Q 003886 137 ENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISW 215 (789)
Q Consensus 137 ~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~w 215 (789)
.|.+..+||..+...-...-..+.|.+||++|+|.++.+ +..++|.++ .+++..|+|+.+... . .+..+
T Consensus 19 TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~d-g~~nly~lDL~t~~i~QLTdg~g~~--------~-~g~~~ 88 (386)
T PF14583_consen 19 TGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFD-GNRNLYLLDLATGEITQLTDGPGDN--------T-FGGFL 88 (386)
T ss_dssp T--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TT-SS-EEEEEETTT-EEEE---SS-B---------T-TT-EE
T ss_pred CCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccC-CCcceEEEEcccCEEEECccCCCCC--------c-cceEE
Confidence 344556676544211111233578999999999988865 888999999 888999999875432 1 36779
Q ss_pred cCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCC
Q 003886 216 NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL 295 (789)
Q Consensus 216 SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~ 295 (789)
||+++.|+|+.. ...|+.+|+++++.+.+...+..
T Consensus 89 s~~~~~~~Yv~~--------------------------------------------~~~l~~vdL~T~e~~~vy~~p~~- 123 (386)
T PF14583_consen 89 SPDDRALYYVKN--------------------------------------------GRSLRRVDLDTLEERVVYEVPDD- 123 (386)
T ss_dssp -TTSSEEEEEET--------------------------------------------TTEEEEEETTT--EEEEEE--TT-
T ss_pred ecCCCeEEEEEC--------------------------------------------CCeEEEEECCcCcEEEEEECCcc-
Confidence 999999999632 14789999999998877534433
Q ss_pred ccceEEEee--CCCCCccEEEEEeecCCceee-----e--eeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeee
Q 003886 296 SVGQVVWAP--LNEGLHQYLVFVGWSSETRKL-----G--IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN 366 (789)
Q Consensus 296 ~~~~~~wSP--Dg~~~~~~l~f~~~~~~~~~~-----g--~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (789)
-.+.-.|+. |+.. ++.........+. + -.+..+..+.|+.+|+ .+|+.+.
T Consensus 124 ~~g~gt~v~n~d~t~----~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl-----------------~tG~~~~ 182 (386)
T PF14583_consen 124 WKGYGTWVANSDCTK----LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL-----------------KTGERKV 182 (386)
T ss_dssp EEEEEEEEE-TTSSE----EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET-----------------TT--EEE
T ss_pred cccccceeeCCCccE----EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC-----------------CCCceeE
Confidence 334456754 4555 5554432221110 0 0123355678999999 8899888
Q ss_pred cCCCCCccCcceecCC-CCEEEEEecCCCCCCCCcccc-ceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCcccccc
Q 003886 367 LTESISSAFFPRFSPD-GKFLVFLSAKSSVDSGAHSAT-DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS 444 (789)
Q Consensus 367 Lt~~~~~~~~p~~SpD-G~~la~~s~~~~~~~g~~~~~-~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~ 444 (789)
+.........+.|||. ...|.|+- . |++..- .+||.+|.++++.+.+...... .
T Consensus 183 v~~~~~wlgH~~fsP~dp~li~fCH-E-----Gpw~~Vd~RiW~i~~dg~~~~~v~~~~~~--e---------------- 238 (386)
T PF14583_consen 183 VFEDTDWLGHVQFSPTDPTLIMFCH-E-----GPWDLVDQRIWTINTDGSNVKKVHRRMEG--E---------------- 238 (386)
T ss_dssp EEEESS-EEEEEEETTEEEEEEEEE-------S-TTTSS-SEEEEETTS---EESS---TT--E----------------
T ss_pred EEecCccccCcccCCCCCCEEEEec-c-----CCcceeceEEEEEEcCCCcceeeecCCCC--c----------------
Confidence 8777777889999995 45556655 3 555553 4899999888766544321100 0
Q ss_pred CCCCCccccCCCEEEEEEEeCC--eEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEe
Q 003886 445 SILSNPWLSDGCTMLLSSIWGS--SQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 445 ~~~~~~ws~Dg~~l~~~~~~~~--~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s 507 (789)
....--|++||+.|+|.+...+ ...|+.+|+.+++.+++...+. .+....++||+.++-=.+
T Consensus 239 ~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~-~~H~~ss~Dg~L~vGDG~ 302 (386)
T PF14583_consen 239 SVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPW-CSHFMSSPDGKLFVGDGG 302 (386)
T ss_dssp EEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-S-EEEEEE-TTSSEEEEEE-
T ss_pred ccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCc-eeeeEEcCCCCEEEecCC
Confidence 1122359999999999776443 4568899999998887755443 334445567776554443
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-09 Score=114.15 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=49.2
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
+..+.|||||++.|.+..++ .++..+ .+|+...++.-...+.|.| ..++||||+++++.++.+++.+
T Consensus 193 V~~VRysPDG~~Fat~gsDg----ki~iyDGktge~vg~l~~~~aHkGsI------falsWsPDs~~~~T~SaDkt~K 260 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDG----KIYIYDGKTGEKVGELEDSDAHKGSI------FALSWSPDSTQFLTVSADKTIK 260 (603)
T ss_pred eeeEEECCCCCeEEEecCCc----cEEEEcCCCccEEEEecCCCCccccE------EEEEECCCCceEEEecCCceEE
Confidence 67788999999999876554 355444 4565555555444555677 6899999999999998877654
|
|
| >PRK03204 haloalkane dehalogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.5e-11 Score=124.26 Aligned_cols=103 Identities=17% Similarity=0.276 Sum_probs=78.1
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.|.||++||.+. ....|......|. ++|.|+++|+|| +|.+... .. ....++++.+.+..++++ .+.+
T Consensus 34 ~~~iv~lHG~~~--~~~~~~~~~~~l~-~~~~vi~~D~~G---~G~S~~~---~~-~~~~~~~~~~~~~~~~~~--~~~~ 101 (286)
T PRK03204 34 GPPILLCHGNPT--WSFLYRDIIVALR-DRFRCVAPDYLG---FGLSERP---SG-FGYQIDEHARVIGEFVDH--LGLD 101 (286)
T ss_pred CCEEEEECCCCc--cHHHHHHHHHHHh-CCcEEEEECCCC---CCCCCCC---Cc-cccCHHHHHHHHHHHHHH--hCCC
Confidence 478999999764 3456666666665 469999999998 5544321 11 123577888888888776 4567
Q ss_pred cEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
++.++|||+||.++..++..+|++++++|+.++..
T Consensus 102 ~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~ 136 (286)
T PRK03204 102 RYLSMGQDWGGPISMAVAVERADRVRGVVLGNTWF 136 (286)
T ss_pred CEEEEEECccHHHHHHHHHhChhheeEEEEECccc
Confidence 89999999999999999999999999999887643
|
|
| >COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.4e-11 Score=110.07 Aligned_cols=159 Identities=18% Similarity=0.240 Sum_probs=112.3
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCC---CCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS---VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~---~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
..+++..- |. +....|+.|..|--|.. +....-...+..|.++||.++.+||||-++...+| +.|.-
T Consensus 14 G~le~~~~-~~---~~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~f------D~GiG 83 (210)
T COG2945 14 GRLEGRYE-PA---KTPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEF------DNGIG 83 (210)
T ss_pred ccceeccC-CC---CCCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCcc------cCCcc
Confidence 34555443 43 35678999999874432 22223334556788999999999999966655544 44566
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCcc
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 730 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (789)
+.+|..++++|+.++. -+..-..+.|+|+|+++++.++.+.|+ ....++..|.++...
T Consensus 84 E~~Da~aaldW~~~~h-p~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~is~~p~~~~~d-------------------- 141 (210)
T COG2945 84 ELEDAAAALDWLQARH-PDSASCWLAGFSFGAYIAMQLAMRRPE-ILVFISILPPINAYD-------------------- 141 (210)
T ss_pred hHHHHHHHHHHHHhhC-CCchhhhhcccchHHHHHHHHHHhccc-ccceeeccCCCCchh--------------------
Confidence 7999999999999973 122334789999999999999998875 566666666554100
Q ss_pred ccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHC
Q 003886 731 KDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHI 785 (789)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l 785 (789)
..++....+|.|+|||+.|++|.+....+..+..
T Consensus 142 ---------------------fs~l~P~P~~~lvi~g~~Ddvv~l~~~l~~~~~~ 175 (210)
T COG2945 142 ---------------------FSFLAPCPSPGLVIQGDADDVVDLVAVLKWQESI 175 (210)
T ss_pred ---------------------hhhccCCCCCceeEecChhhhhcHHHHHHhhcCC
Confidence 0134455679999999999999999988887753
|
|
| >PRK06489 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-11 Score=134.26 Aligned_cols=107 Identities=21% Similarity=0.217 Sum_probs=70.6
Q ss_pred CcEEEEEcCCCCCCCchhhH--HHHHHH-------HHCCcEEEEEcCCCCCCCCchhhccCC--CCCCcccHHHHHHHH-
Q 003886 592 DPLIVVLHGGPHSVSLSSYS--KSLAFL-------SSVGYSLLIVNYRGSLGFGEEALQSLP--GKVGSQDVNDVLTAI- 659 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~--~~~~~l-------a~~Gy~V~~~d~rGs~G~G~~~~~~~~--~~~~~~~~~D~~~~i- 659 (789)
.|.||++||++.+ ...|. .....| ...+|.|+++|+|| +|.+...... .......++++.+.+
T Consensus 69 gpplvllHG~~~~--~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~G---hG~S~~p~~~~~~~~~~~~~~~~a~~~~ 143 (360)
T PRK06489 69 DNAVLVLHGTGGS--GKSFLSPTFAGELFGPGQPLDASKYFIILPDGIG---HGKSSKPSDGLRAAFPRYDYDDMVEAQY 143 (360)
T ss_pred CCeEEEeCCCCCc--hhhhccchhHHHhcCCCCcccccCCEEEEeCCCC---CCCCCCCCcCCCCCCCcccHHHHHHHHH
Confidence 5789999997764 22332 122222 25789999999998 5544321100 011124466666543
Q ss_pred HHHHHcCCCCCccEE-EEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 660 DHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 660 ~~l~~~~~~d~~rv~-l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
..+.++ .+.+++. |+|||+||++++.++.++|++++++|+.++.
T Consensus 144 ~~l~~~--lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~ 188 (360)
T PRK06489 144 RLVTEG--LGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQ 188 (360)
T ss_pred HHHHHh--cCCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccC
Confidence 334444 3456775 8999999999999999999999999988764
|
|
| >PLN02894 hydrolase, alpha/beta fold family protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.1e-11 Score=129.04 Aligned_cols=106 Identities=17% Similarity=0.301 Sum_probs=71.9
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCc-ccHH-HHHHHHHHHHHcCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS-QDVN-DVLTAIDHVIDMGL 667 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~-~~~~-D~~~~i~~l~~~~~ 667 (789)
+..|.||++||.+.+ ...|......|++ +|.|+++|+|| +|.+.... ..... .+.. .+.+.+..+++.
T Consensus 103 ~~~p~vvllHG~~~~--~~~~~~~~~~L~~-~~~vi~~D~rG---~G~S~~~~--~~~~~~~~~~~~~~~~i~~~~~~-- 172 (402)
T PLN02894 103 EDAPTLVMVHGYGAS--QGFFFRNFDALAS-RFRVIAIDQLG---WGGSSRPD--FTCKSTEETEAWFIDSFEEWRKA-- 172 (402)
T ss_pred CCCCEEEEECCCCcc--hhHHHHHHHHHHh-CCEEEEECCCC---CCCCCCCC--cccccHHHHHHHHHHHHHHHHHH--
Confidence 356899999997653 4455556667765 59999999998 44443211 11111 1111 223333333333
Q ss_pred CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
.+.+++.|+|||+||++++.++.++|++++++|+.+|.
T Consensus 173 l~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~ 210 (402)
T PLN02894 173 KNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPA 210 (402)
T ss_pred cCCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCc
Confidence 35578999999999999999999999999999999875
|
|
| >TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.5e-11 Score=130.16 Aligned_cols=122 Identities=9% Similarity=0.078 Sum_probs=82.0
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCC---chhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHH
Q 003886 577 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVS---LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (789)
Q Consensus 577 ~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~---~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~ 653 (789)
..+.|.|.. +...+.| ||++||-..... ...+...+.+|+++||.|+++|+|| +|.+.. ..........
T Consensus 49 ~l~~~~~~~-~~~~~~p-vl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g---~g~s~~---~~~~~d~~~~ 120 (350)
T TIGR01836 49 VLYRYTPVK-DNTHKTP-LLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGY---PDRADR---YLTLDDYING 120 (350)
T ss_pred EEEEecCCC-CcCCCCc-EEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCC---CCHHHh---cCCHHHHHHH
Confidence 334455542 1122334 788888322111 1123457789999999999999987 333221 1111111124
Q ss_pred HHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccch
Q 003886 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708 (789)
Q Consensus 654 D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~ 708 (789)
++.+++++++++ .+.+++.++|||+||.+++.++..+|++++++|+.++..++
T Consensus 121 ~~~~~v~~l~~~--~~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~ 173 (350)
T TIGR01836 121 YIDKCVDYICRT--SKLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDF 173 (350)
T ss_pred HHHHHHHHHHHH--hCCCcccEEEECHHHHHHHHHHHhCchheeeEEEecccccc
Confidence 578889999887 35578999999999999999999999999999999987764
|
This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates. |
| >TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-11 Score=128.22 Aligned_cols=124 Identities=15% Similarity=0.197 Sum_probs=88.8
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC--chhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS--LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~--~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
.+|..+.|+++.|.+ .+.+.||++|||+.... ...+......|+++||.|+++|+|| +|.+.... ..+
T Consensus 9 ~~~~~l~g~~~~p~~----~~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G---~G~S~~~~--~~~- 78 (274)
T TIGR03100 9 CEGETLVGVLHIPGA----SHTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRG---MGDSEGEN--LGF- 78 (274)
T ss_pred cCCcEEEEEEEcCCC----CCCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCC---CCCCCCCC--CCH-
Confidence 357889999999862 23467777888765322 2234456778999999999999998 55443111 111
Q ss_pred cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
....+|+.++++++.++. -..++|+++|||+||.+++.++.. +++++++|+.+|..
T Consensus 79 ~~~~~d~~~~~~~l~~~~-~g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~ 134 (274)
T TIGR03100 79 EGIDADIAAAIDAFREAA-PHLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWV 134 (274)
T ss_pred HHHHHHHHHHHHHHHhhC-CCCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCcc
Confidence 123578999999987651 124679999999999999988765 56899999999874
|
This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily. |
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.8e-11 Score=131.43 Aligned_cols=104 Identities=21% Similarity=0.368 Sum_probs=78.2
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (789)
...|.||++||.+++ ...|......|.. +|.|+++|+|| +|.+... ....++.++.+.+..+++. ++
T Consensus 129 ~~~~~vl~~HG~~~~--~~~~~~~~~~l~~-~~~v~~~d~~g---~G~s~~~-----~~~~~~~~~~~~~~~~~~~--~~ 195 (371)
T PRK14875 129 GDGTPVVLIHGFGGD--LNNWLFNHAALAA-GRPVIALDLPG---HGASSKA-----VGAGSLDELAAAVLAFLDA--LG 195 (371)
T ss_pred CCCCeEEEECCCCCc--cchHHHHHHHHhc-CCEEEEEcCCC---CCCCCCC-----CCCCCHHHHHHHHHHHHHh--cC
Confidence 345789999996654 4566666666655 49999999998 4443211 1133567777777777765 56
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
..++.++|||+||++++.++.++|++++++|+.+|..
T Consensus 196 ~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~ 232 (371)
T PRK14875 196 IERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAG 232 (371)
T ss_pred CccEEEEeechHHHHHHHHHHhCchheeEEEEECcCC
Confidence 6789999999999999999999999999999988753
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-09 Score=113.40 Aligned_cols=240 Identities=11% Similarity=0.092 Sum_probs=132.5
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
++|||+.+..... ....++.+++.+ ++.. .+... .......|+|||+.++.....+ + .+.
T Consensus 38 ~~~dg~~l~~~~~--------~~~~v~~~d~~~--~~~~~~~~~~------~~~~~~~~~~~g~~l~~~~~~~-~--~l~ 98 (300)
T TIGR03866 38 LSKDGKLLYVCAS--------DSDTIQVIDLAT--GEVIGTLPSG------PDPELFALHPNGKILYIANEDD-N--LVT 98 (300)
T ss_pred ECCCCCEEEEEEC--------CCCeEEEEECCC--CcEEEeccCC------CCccEEEECCCCCEEEEEcCCC-C--eEE
Confidence 4689886643321 123566666532 2221 22211 2345678999999876553322 2 344
Q ss_pred EEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeC
Q 003886 183 ELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 261 (789)
Q Consensus 183 ~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (789)
.++ ..++....+...... .++.|+|||+.+++.....
T Consensus 99 ~~d~~~~~~~~~~~~~~~~----------~~~~~~~dg~~l~~~~~~~-------------------------------- 136 (300)
T TIGR03866 99 VIDIETRKVLAEIPVGVEP----------EGMAVSPDGKIVVNTSETT-------------------------------- 136 (300)
T ss_pred EEECCCCeEEeEeeCCCCc----------ceEEECCCCCEEEEEecCC--------------------------------
Confidence 433 233322222222222 5789999999988764321
Q ss_pred CcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEe
Q 003886 262 DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 341 (789)
Q Consensus 262 d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d 341 (789)
..+.++|..+++.... .........+.|+|||+. |++.+. ....|+++|
T Consensus 137 -----------~~~~~~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l~~~~~--------------~~~~v~i~d 185 (300)
T TIGR03866 137 -----------NMAHFIDTKTYEIVDN--VLVDQRPRFAEFTADGKE----LWVSSE--------------IGGTVSVID 185 (300)
T ss_pred -----------CeEEEEeCCCCeEEEE--EEcCCCccEEEECCCCCE----EEEEcC--------------CCCEEEEEE
Confidence 2455677777665432 122234457899999997 766542 123688888
Q ss_pred cccccchhhhhhhhcCCCCCCCe-eecCCC-------CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 342 VSLYKSEASELELKESSSEDLPV-VNLTES-------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~-------~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
+ ++++. +.++.. .......+|||||+.++..... ..++++||..+
T Consensus 186 ~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~----------~~~i~v~d~~~ 238 (300)
T TIGR03866 186 V-----------------ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP----------ANRVAVVDAKT 238 (300)
T ss_pred c-----------------CcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC----------CCeEEEEECCC
Confidence 7 33332 333211 1123457899999986544322 23589999876
Q ss_pred CCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE-EEec
Q 003886 414 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL-LRIT 484 (789)
Q Consensus 414 ~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~-~~lt 484 (789)
++.... .. . . ..+..+.|+|||+.|+......+ .|.++|+.+++. .++.
T Consensus 239 ~~~~~~-------~~---~---~-------~~~~~~~~~~~g~~l~~~~~~~~--~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 239 YEVLDY-------LL---V---G-------QRVWQLAFTPDEKYLLTTNGVSN--DVSVIDVAALKVIKSIK 288 (300)
T ss_pred CcEEEE-------EE---e---C-------CCcceEEECCCCCEEEEEcCCCC--eEEEEECCCCcEEEEEE
Confidence 443210 00 0 0 02346689999998865543333 577778888885 4443
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.4e-09 Score=109.18 Aligned_cols=319 Identities=19% Similarity=0.200 Sum_probs=158.8
Q ss_pred HHHHhhcCccccce-EEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCC
Q 003886 85 LLQDFTNISSIDKA-WTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP 163 (789)
Q Consensus 85 l~~~~~~~~~~~~~-~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SP 163 (789)
+.+.|..+|+..-. -+.-..+|-|..+.|.- .+.+++.+++.. ....++|.+. ..+....+||
T Consensus 6 lk~~~~~lPst~Rg~~~~ig~dpkgd~ilY~n----------Gksv~ir~i~~~-~~~~iYtEH~-----~~vtVAkySP 69 (603)
T KOG0318|consen 6 LKETFASLPSTERGVPIIIGGDPKGDNILYTN----------GKSVIIRNIDNP-ASVDIYTEHA-----HQVTVAKYSP 69 (603)
T ss_pred hhhhccCCCcccCCcceEeccCCCCCeEEEeC----------CCEEEEEECCCc-cceeeecccc-----ceeEEEEeCC
Confidence 44455666766532 22234568899999962 335566666322 2233455443 2355667999
Q ss_pred CCCeEEEEecCCCCCCeEEEEecCCceeEEEe-cCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC--CCccCCC
Q 003886 164 SGSKLLVVRNPENESPIQFELWSQSQLEKEFH-VPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK--PTFSLGS 240 (789)
Q Consensus 164 dG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~--~~~~~~~ 240 (789)
.|-++|-.-. ..-.+||+..+...++. .-.-..|.| ..++|++|+++|+-+.+.+..=. ..|+..
T Consensus 70 sG~yiASGD~-----sG~vRIWdtt~~~hiLKnef~v~aG~I------~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG- 137 (603)
T KOG0318|consen 70 SGFYIASGDV-----SGKVRIWDTTQKEHILKNEFQVLAGPI------KDISWDFDSKRIAAVGEGRERFGHVFLWDSG- 137 (603)
T ss_pred CceEEeecCC-----cCcEEEEeccCcceeeeeeeeeccccc------ccceeCCCCcEEEEEecCccceeEEEEecCC-
Confidence 9998885322 23567884332222221 111223334 89999999999999887653211 111111
Q ss_pred CCCCCCCcCCCCCCCcceeeCCcc-cccCCccCceEEEEEccCCceEeccCCCC--CCccceEEEeeCCCCCccEEEEEe
Q 003886 241 TKGGSSDKDCNSWKGQGDWEEDWG-ETYAGKRQPSLFVININSGEVQAVKGIPK--SLSVGQVVWAPLNEGLHQYLVFVG 317 (789)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~d~g-~~~~~~~~~~l~v~d~~~g~~~~l~~~~~--~~~~~~~~wSPDg~~~~~~l~f~~ 317 (789)
...-....+..-.....+.|.=- ...++..++.+-.+ .|.+-+.+-+.+ .--+..+.|||||+. ++-++
T Consensus 138 -~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ff---eGPPFKFk~s~r~HskFV~~VRysPDG~~----Fat~g 209 (603)
T KOG0318|consen 138 -NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFF---EGPPFKFKSSFREHSKFVNCVRYSPDGSR----FATAG 209 (603)
T ss_pred -CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEe---eCCCeeeeecccccccceeeEEECCCCCe----EEEec
Confidence 00000001100000111111000 00000001111111 111111110001 113568899999998 66665
Q ss_pred ecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecC---CCCCccCcceecCCCCEEEEEecCC
Q 003886 318 WSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLT---ESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 318 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt---~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
.+..+|++|= .+++ +-.|. .+.+.++..+||||+++++..+.+.
T Consensus 210 ---------------sDgki~iyDG-----------------ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk 257 (603)
T KOG0318|consen 210 ---------------SDGKIYIYDG-----------------KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK 257 (603)
T ss_pred ---------------CCccEEEEcC-----------------CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc
Confidence 2337888885 4443 44555 4577899999999999999988765
Q ss_pred CCCCCCccccceeEEeecCCCCCCC-cccce---ee-E-----------------EeeeeccCCC---CCccccccCCCC
Q 003886 394 SVDSGAHSATDSLHRIDWPTNGNFS-SLEKI---VD-V-----------------IPVVQCAEGD---CFPGLYSSSILS 448 (789)
Q Consensus 394 ~~~~g~~~~~~~L~~~d~~~~~~~~-~t~~~---~~-v-----------------~~~~~~~~~~---~f~g~~~~~~~~ 448 (789)
.+.+||..++.... +..+. +. + +..+...... .+.| +.-++..
T Consensus 258 -----------t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~G-HnK~ITa 325 (603)
T KOG0318|consen 258 -----------TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISG-HNKSITA 325 (603)
T ss_pred -----------eEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecc-cccceeE
Confidence 46777776653311 11000 00 0 1111110000 0111 1234556
Q ss_pred CccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC
Q 003886 449 NPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA 486 (789)
Q Consensus 449 ~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~ 486 (789)
+..++|+++| |+++.+| .|..++..+|..-++...
T Consensus 326 Ltv~~d~~~i-~SgsyDG--~I~~W~~~~g~~~~~~g~ 360 (603)
T KOG0318|consen 326 LTVSPDGKTI-YSGSYDG--HINSWDSGSGTSDRLAGK 360 (603)
T ss_pred EEEcCCCCEE-EeeccCc--eEEEEecCCccccccccc
Confidence 7788999766 5655555 456667777877777543
|
|
| >PRK00175 metX homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.5e-11 Score=129.22 Aligned_cols=114 Identities=17% Similarity=0.244 Sum_probs=75.9
Q ss_pred CCcEEEEEcCCCCCCCch-----------hhHHHH---HHHHHCCcEEEEEcCCCCCC-C-Cchhhcc---CC--CCCCc
Q 003886 591 CDPLIVVLHGGPHSVSLS-----------SYSKSL---AFLSSVGYSLLIVNYRGSLG-F-GEEALQS---LP--GKVGS 649 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~-----------~~~~~~---~~la~~Gy~V~~~d~rGs~G-~-G~~~~~~---~~--~~~~~ 649 (789)
..|.||++||.+.+.... .|...+ ..|...+|.|+++|++|..| . +.+.... .+ ..+..
T Consensus 47 ~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~ 126 (379)
T PRK00175 47 RSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPV 126 (379)
T ss_pred CCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCc
Confidence 358999999977753211 132222 13436789999999998322 1 1111000 00 01123
Q ss_pred ccHHHHHHHHHHHHHcCCCCCcc-EEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 650 QDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~r-v~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
..++++.+.+..+++. ++.++ +.++|||+||++++.++.++|++++++|+.++..
T Consensus 127 ~~~~~~~~~~~~~l~~--l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 182 (379)
T PRK00175 127 ITIRDWVRAQARLLDA--LGITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASSA 182 (379)
T ss_pred CCHHHHHHHHHHHHHH--hCCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCCc
Confidence 5677888777777776 34567 4899999999999999999999999999998654
|
|
| >PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-11 Score=120.91 Aligned_cols=172 Identities=22% Similarity=0.302 Sum_probs=104.7
Q ss_pred EEEEcCCCCCCCchh-hHHHHHHHHH-CCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHc---CCCC
Q 003886 595 IVVLHGGPHSVSLSS-YSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM---GLAN 669 (789)
Q Consensus 595 vv~~HGg~~~~~~~~-~~~~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---~~~d 669 (789)
||++|||++...... .......+++ .|+.|+.+|||-++. ......++|+.++++|++++ -.+|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~-----------~~~p~~~~D~~~a~~~l~~~~~~~~~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPE-----------APFPAALEDVKAAYRWLLKNADKLGID 69 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTT-----------SSTTHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeecccccc-----------ccccccccccccceeeecccccccccc
Confidence 789999998754443 3345566664 999999999995432 22345589999999999987 2478
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCC----ceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCCh-hhHH
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSV-EDLT 744 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~----~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 744 (789)
.++|+|+|+|.||.+++.++....+ .++++++.+|+.++... ....+.....+... .+...... ....
T Consensus 70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 142 (211)
T PF07859_consen 70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDF----DGPSYDDSNENKDD---PFLPAPKIDWFWK 142 (211)
T ss_dssp EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTS----SCHHHHHHHHHSTT---SSSBHHHHHHHHH
T ss_pred ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhc----cccccccccccccc---ccccccccccccc
Confidence 9999999999999999999875322 48999999998876100 00000000000000 00000000 0001
Q ss_pred HH--------HhcCccccCCCC--CCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 745 RF--------HSKSPISHISKV--KTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 745 ~~--------~~~sp~~~~~~i--~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.+ ...+|+.. ..+ -.|++|++|+.|..+ .++..++++|++
T Consensus 143 ~~~~~~~~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l~--~~~~~~~~~L~~ 192 (211)
T PF07859_consen 143 LYLPGSDRDDPLASPLNA-SDLKGLPPTLIIHGEDDVLV--DDSLRFAEKLKK 192 (211)
T ss_dssp HHHSTGGTTSTTTSGGGS-SCCTTCHEEEEEEETTSTTH--HHHHHHHHHHHH
T ss_pred cccccccccccccccccc-cccccCCCeeeeccccccch--HHHHHHHHHHHH
Confidence 11 13445544 122 358999999999765 688999998874
|
; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A .... |
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.3e-10 Score=104.52 Aligned_cols=253 Identities=14% Similarity=0.127 Sum_probs=157.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-ceeEEEecC-CCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-QLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~-~~~~~~~~~-~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
+.+....+.||++.||...... -.+|.+.... .+...++.. .++ ..+.|--||++++..+++...
T Consensus 41 sqVNrLeiTpdk~~LAaa~~qh---vRlyD~~S~np~Pv~t~e~h~kNV----------taVgF~~dgrWMyTgseDgt~ 107 (311)
T KOG0315|consen 41 SQVNRLEITPDKKDLAAAGNQH---VRLYDLNSNNPNPVATFEGHTKNV----------TAVGFQCDGRWMYTGSEDGTV 107 (311)
T ss_pred cceeeEEEcCCcchhhhccCCe---eEEEEccCCCCCceeEEeccCCce----------EEEEEeecCeEEEecCCCceE
Confidence 4588889999999999754332 1233333222 233444432 333 789999999999999888866
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc-eEeccCCCC-CCccceEEEeeCCCCC
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPK-SLSVGQVVWAPLNEGL 309 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~-~~~~~~~~wSPDg~~~ 309 (789)
+.+.... ..-...-+..+-+......|+-+|.+++.....|++||+.... ...+ +|. +..+.+....|||+.
T Consensus 108 kIWdlR~---~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l--iPe~~~~i~sl~v~~dgsm- 181 (311)
T KOG0315|consen 108 KIWDLRS---LSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL--IPEDDTSIQSLTVMPDGSM- 181 (311)
T ss_pred EEEeccC---cccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc--CCCCCcceeeEEEcCCCcE-
Confidence 5332221 2222223334445556677777899999999999999998763 3444 454 347889999999997
Q ss_pred ccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEE
Q 003886 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 310 ~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~ 389 (789)
++-.. .....|++++.....+ ..-....++..+.+.+..-.+|||+|+||..
T Consensus 182 ---l~a~n---------------nkG~cyvW~l~~~~~~----------s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 182 ---LAAAN---------------NKGNCYVWRLLNHQTA----------SELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred ---EEEec---------------CCccEEEEEccCCCcc----------ccceEhhheecccceEEEEEECCCCcEEEee
Confidence 66554 2346788877311000 0111223444567788899999999999998
Q ss_pred ecCCCCCCCCccccceeEEeecCCC--CCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCe
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTN--GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 467 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~--~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 467 (789)
+.+. .+++|+.++- ..+.++... +-+-...||.||++| |+++.+..
T Consensus 234 ssdk-----------tv~iwn~~~~~kle~~l~gh~--------------------rWvWdc~FS~dg~Yl-vTassd~~ 281 (311)
T KOG0315|consen 234 SSDK-----------TVKIWNTDDFFKLELVLTGHQ--------------------RWVWDCAFSADGEYL-VTASSDHT 281 (311)
T ss_pred cCCc-----------eEEEEecCCceeeEEEeecCC--------------------ceEEeeeeccCccEE-EecCCCCc
Confidence 8765 3677776553 001111111 012355789999876 56666677
Q ss_pred EEEEEEECCCCcEEEecCCC
Q 003886 468 QVIISVNVSSGELLRITPAE 487 (789)
Q Consensus 468 ~~l~~~dl~tg~~~~lt~~~ 487 (789)
.+||. +..|+..+...++
T Consensus 282 ~rlW~--~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 282 ARLWD--LSAGKEVRQYQGH 299 (311)
T ss_pred eeecc--cccCceeeecCCc
Confidence 77774 5567665554443
|
|
| >KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-10 Score=115.90 Aligned_cols=108 Identities=17% Similarity=0.283 Sum_probs=81.9
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (789)
.....+|++||.+.+ ...|..++..|+. ...|.++|..| +|.+.+....-+.... .....+.++..... ..
T Consensus 88 ~~~~plVliHGyGAg--~g~f~~Nf~~La~-~~~vyaiDllG---~G~SSRP~F~~d~~~~-e~~fvesiE~WR~~--~~ 158 (365)
T KOG4409|consen 88 ANKTPLVLIHGYGAG--LGLFFRNFDDLAK-IRNVYAIDLLG---FGRSSRPKFSIDPTTA-EKEFVESIEQWRKK--MG 158 (365)
T ss_pred cCCCcEEEEeccchh--HHHHHHhhhhhhh-cCceEEecccC---CCCCCCCCCCCCcccc-hHHHHHHHHHHHHH--cC
Confidence 455567789995553 5567777888888 69999999976 8888776665544333 33555556555443 34
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
.+++.|+|||+|||++..+|.++|++++-+|+.+|.-
T Consensus 159 L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~G 195 (365)
T KOG4409|consen 159 LEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWG 195 (365)
T ss_pred CcceeEeeccchHHHHHHHHHhChHhhceEEEecccc
Confidence 5789999999999999999999999999999999853
|
|
| >KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-10 Score=119.12 Aligned_cols=125 Identities=19% Similarity=0.245 Sum_probs=98.5
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc---hhhHHHHHHH-HHCCcEEEEEcCCCCCCCCchhhccCCCCCCc
Q 003886 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL---SSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (789)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~---~~~~~~~~~l-a~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~ 649 (789)
..+...+|.|......++.|+|||+|||++...+ ..|...+..+ .+.+..|+++|||-.+. +...
T Consensus 72 ~~l~vRly~P~~~~~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPE-----------h~~P 140 (336)
T KOG1515|consen 72 TNLPVRLYRPTSSSSETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPE-----------HPFP 140 (336)
T ss_pred CCeEEEEEcCCCCCcccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCC-----------CCCC
Confidence 4478889999865444789999999999986543 3455556666 57899999999997543 3334
Q ss_pred ccHHHHHHHHHHHHHc----CCCCCccEEEEEcCccHHHHHHHHHhC------CCceeEEEEeCCccchh
Q 003886 650 QDVNDVLTAIDHVIDM----GLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCNLA 709 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~~----~~~d~~rv~l~G~S~GG~~a~~~~~~~------p~~~~a~v~~~pv~~~~ 709 (789)
..++|..+++.|+.++ ..+|.+||+|+|-|.||.+|..++.+. +..+++.|+..|++...
T Consensus 141 a~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~ 210 (336)
T KOG1515|consen 141 AAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGT 210 (336)
T ss_pred ccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCC
Confidence 4588999999999885 348999999999999999999887652 35789999999988653
|
|
| >PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=119.23 Aligned_cols=100 Identities=22% Similarity=0.183 Sum_probs=73.1
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.|.||++||.+.+ ...|......| .+|.|+++|+|| +|.+.... ...++++.+.+..+++. .+.+
T Consensus 2 ~p~vvllHG~~~~--~~~w~~~~~~l--~~~~vi~~D~~G---~G~S~~~~------~~~~~~~~~~l~~~l~~--~~~~ 66 (242)
T PRK11126 2 LPWLVFLHGLLGS--GQDWQPVGEAL--PDYPRLYIDLPG---HGGSAAIS------VDGFADVSRLLSQTLQS--YNIL 66 (242)
T ss_pred CCEEEEECCCCCC--hHHHHHHHHHc--CCCCEEEecCCC---CCCCCCcc------ccCHHHHHHHHHHHHHH--cCCC
Confidence 3779999997775 45777777777 369999999998 55443211 12455555555555554 3457
Q ss_pred cEEEEEcCccHHHHHHHHHhCCC-ceeEEEEeCCcc
Q 003886 672 KVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLC 706 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~p~-~~~a~v~~~pv~ 706 (789)
++.++|||+||.+++.++.++|+ +++++++.++..
T Consensus 67 ~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~ 102 (242)
T PRK11126 67 PYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNP 102 (242)
T ss_pred CeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCC
Confidence 89999999999999999999865 499999887553
|
|
| >KOG4667 consensus Predicted esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-09 Score=102.36 Aligned_cols=189 Identities=13% Similarity=0.077 Sum_probs=117.0
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (789)
+...+||+.||.-...........+.+|++.||.++.+|++|.+....++. +++ +..+.+|+..+++++....
T Consensus 31 gs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~gsf~---~Gn-~~~eadDL~sV~q~~s~~n--- 103 (269)
T KOG4667|consen 31 GSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESEGSFY---YGN-YNTEADDLHSVIQYFSNSN--- 103 (269)
T ss_pred CCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcCCccc---cCc-ccchHHHHHHHHHHhccCc---
Confidence 456899999996544322233345668999999999999999554433332 333 3455799999999987631
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCC---cchhhhhccCccccccCCCCC---hhhH
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP---DWCYVESYGSKGKDSFTESPS---VEDL 743 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~ 743 (789)
.---.|+|||-||.+++..+.++++ +.-+|..++-.+.......+--+ .|.....+-. .-.+-...+. .+-.
T Consensus 104 r~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~eRlg~~~l~~ike~Gfid-~~~rkG~y~~rvt~eSl 181 (269)
T KOG4667|consen 104 RVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGINERLGEDYLERIKEQGFID-VGPRKGKYGYRVTEESL 181 (269)
T ss_pred eEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchhhhhcccHHHHHHhCCcee-cCcccCCcCceecHHHH
Confidence 1223689999999999999999877 77788888887776554322111 1111111100 0111111111 1111
Q ss_pred HHHHhcCccccCC--CCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 744 TRFHSKSPISHIS--KVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 744 ~~~~~~sp~~~~~--~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
......+....-. ..+||+|-+||..|.+||.+++.++++.+++
T Consensus 182 mdrLntd~h~aclkId~~C~VLTvhGs~D~IVPve~AkefAk~i~n 227 (269)
T KOG4667|consen 182 MDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVPVEDAKEFAKIIPN 227 (269)
T ss_pred HHHHhchhhhhhcCcCccCceEEEeccCCceeechhHHHHHHhccC
Confidence 1111111111112 3469999999999999999999999988764
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.9e-08 Score=102.93 Aligned_cols=248 Identities=15% Similarity=0.090 Sum_probs=129.6
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEec--CCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV--PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
.....++||||++|+...... +.-..|.+..++.....-.. .... ..+.++|||++|+.+...
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~-~~i~~~~~~~~g~l~~~~~~~~~~~p----------~~i~~~~~g~~l~v~~~~---- 100 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPE-FRVLSYRIADDGALTFAAESPLPGSP----------THISTDHQGRFLFSASYN---- 100 (330)
T ss_pred CCccEEECCCCCEEEEEECCC-CcEEEEEECCCCceEEeeeecCCCCc----------eEEEECCCCCEEEEEEcC----
Confidence 455678999999886654432 33233444434433222221 2122 578999999977655321
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccC-CceE-eccCCCCCCccceEEEeeCCCCCc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-GEVQ-AVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-g~~~-~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
...|.+++++. |... .+...+.........++|||+.
T Consensus 101 ---------------------------------------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~-- 139 (330)
T PRK11028 101 ---------------------------------------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRT-- 139 (330)
T ss_pred ---------------------------------------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCE--
Confidence 25677777753 3221 1110122234556789999986
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCee-------ecCCCCCccCcceecCCC
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-------NLTESISSAFFPRFSPDG 383 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~Lt~~~~~~~~p~~SpDG 383 (789)
+ |+++.. ...|+++|+. ..+... .+.. .......+|+|||
T Consensus 140 --l-~v~~~~-------------~~~v~v~d~~----------------~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg 186 (330)
T PRK11028 140 --L-WVPCLK-------------EDRIRLFTLS----------------DDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQ 186 (330)
T ss_pred --E-EEeeCC-------------CCEEEEEEEC----------------CCCcccccCCCceecCC-CCCCceEEECCCC
Confidence 5 444322 2268888872 112111 1211 2235678999999
Q ss_pred CEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEE
Q 003886 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 463 (789)
Q Consensus 384 ~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (789)
++|+..... ...|.+||++.+... + ..+..+...+. .+++- .....+.++|||+++|+...
T Consensus 187 ~~lyv~~~~----------~~~v~v~~~~~~~~~-~----~~~~~~~~~p~--~~~~~--~~~~~i~~~pdg~~lyv~~~ 247 (330)
T PRK11028 187 QYAYCVNEL----------NSSVDVWQLKDPHGE-I----ECVQTLDMMPA--DFSDT--RWAADIHITPDGRHLYACDR 247 (330)
T ss_pred CEEEEEecC----------CCEEEEEEEeCCCCC-E----EEEEEEecCCC--cCCCC--ccceeEEECCCCCEEEEecC
Confidence 987655432 246888888642111 0 01111111111 11110 01123568899998877643
Q ss_pred eCCeEEEEEEECCCCcEEEec--CCCCCceeEEeeecCCEEEEEEeCCC
Q 003886 464 WGSSQVIISVNVSSGELLRIT--PAESNFSWSLLTLDGDNIIAVSSSPV 510 (789)
Q Consensus 464 ~~~~~~l~~~dl~tg~~~~lt--~~~~~~~~~~~s~dg~~l~~~~ss~~ 510 (789)
..+...+|.++.+++..+.+. ..........+++||++|+.+.....
T Consensus 248 ~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~ 296 (330)
T PRK11028 248 TASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSH 296 (330)
T ss_pred CCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCC
Confidence 445666777765554433221 11111223578899998887764333
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-08 Score=108.40 Aligned_cols=256 Identities=9% Similarity=0.066 Sum_probs=135.8
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
..+|||+.+... .. ....+..++++. .+....+...+.+ +.....+++|||++|+.....+ +.-.+|
T Consensus 41 ~~spd~~~lyv~-~~-------~~~~i~~~~~~~-~g~l~~~~~~~~~---~~p~~i~~~~~g~~l~v~~~~~-~~v~v~ 107 (330)
T PRK11028 41 VISPDKRHLYVG-VR-------PEFRVLSYRIAD-DGALTFAAESPLP---GSPTHISTDHQGRFLFSASYNA-NCVSVS 107 (330)
T ss_pred EECCCCCEEEEE-EC-------CCCcEEEEEECC-CCceEEeeeecCC---CCceEEEECCCCCEEEEEEcCC-CeEEEE
Confidence 357999877443 22 123455555532 2222111111111 2356788999999987665432 322333
Q ss_pred EEecCCceeEEEec-C--CCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCccee
Q 003886 183 ELWSQSQLEKEFHV-P--QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (789)
Q Consensus 183 ~i~~~~~~~~~~~~-~--~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (789)
.+..++........ . ... ..+.++|||++|+....
T Consensus 108 ~~~~~g~~~~~~~~~~~~~~~----------~~~~~~p~g~~l~v~~~-------------------------------- 145 (330)
T PRK11028 108 PLDKDGIPVAPIQIIEGLEGC----------HSANIDPDNRTLWVPCL-------------------------------- 145 (330)
T ss_pred EECCCCCCCCceeeccCCCcc----------cEeEeCCCCCEEEEeeC--------------------------------
Confidence 33323322222211 1 122 46789999988765422
Q ss_pred eCCcccccCCccCceEEEEEccC-CceEecc----CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCC
Q 003886 260 EEDWGETYAGKRQPSLFVININS-GEVQAVK----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 334 (789)
Q Consensus 260 ~~d~g~~~~~~~~~~l~v~d~~~-g~~~~l~----~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~ 334 (789)
....|.++|+++ |.+.... ..+.......++|+|||+. +|++++..
T Consensus 146 -----------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~-----lyv~~~~~------------- 196 (330)
T PRK11028 146 -----------KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQY-----AYCVNELN------------- 196 (330)
T ss_pred -----------CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCE-----EEEEecCC-------------
Confidence 236788999876 3332110 0122334567899999995 55654322
Q ss_pred cceEEEecccccchhhhhhhhcCCCCCCCee---ecC---CC---CCccCcceecCCCCEEEEEecCCCCCCCCccccce
Q 003886 335 CALYAVRVSLYKSEASELELKESSSEDLPVV---NLT---ES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDS 405 (789)
Q Consensus 335 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~Lt---~~---~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~ 405 (789)
..|.++++.. .+++.+ .+. .. ........++|||++|+. +++. ...
T Consensus 197 ~~v~v~~~~~---------------~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv-~~~~---------~~~ 251 (330)
T PRK11028 197 SSVDVWQLKD---------------PHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA-CDRT---------ASL 251 (330)
T ss_pred CEEEEEEEeC---------------CCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE-ecCC---------CCe
Confidence 2566666620 122221 111 10 111224678999998654 4432 236
Q ss_pred eEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003886 406 LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (789)
Q Consensus 406 L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~l 483 (789)
|.+++++..+... .++..... +. ....+.++|||++||++....+...+|.+|..+|.++.+
T Consensus 252 I~v~~i~~~~~~~------~~~~~~~~---~~-------~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~ 313 (330)
T PRK11028 252 ISVFSVSEDGSVL------SFEGHQPT---ET-------QPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTEL 313 (330)
T ss_pred EEEEEEeCCCCeE------EEeEEEec---cc-------cCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEc
Confidence 7788876543211 11111110 01 123668999999998876657788899888878877655
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-08 Score=108.58 Aligned_cols=269 Identities=15% Similarity=0.223 Sum_probs=145.5
Q ss_pred CCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003886 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (789)
Q Consensus 105 spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (789)
+|+++++ |+..... .....+..+.+..+.++...+...+ +........+.+|||++|+.....+ +.-.++.+
T Consensus 45 ~~~~~~L-Y~~~e~~----~~~g~v~~~~i~~~~g~L~~~~~~~--~~g~~p~~i~~~~~g~~l~vany~~-g~v~v~~l 116 (345)
T PF10282_consen 45 SPDGRRL-YVVNEGS----GDSGGVSSYRIDPDTGTLTLLNSVP--SGGSSPCHIAVDPDGRFLYVANYGG-GSVSVFPL 116 (345)
T ss_dssp -TTSSEE-EEEETTS----STTTEEEEEEEETTTTEEEEEEEEE--ESSSCEEEEEECTTSSEEEEEETTT-TEEEEEEE
T ss_pred EeCCCEE-EEEEccc----cCCCCEEEEEECCCcceeEEeeeec--cCCCCcEEEEEecCCCEEEEEEccC-CeEEEEEc
Confidence 5788666 6654421 1344666666655534333332111 1113456788999999997665443 54455666
Q ss_pred ecCCceeEEEecCCC-cccccc---CCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceee
Q 003886 185 WSQSQLEKEFHVPQT-VHGSVY---ADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (789)
Q Consensus 185 ~~~~~~~~~~~~~~~-~~g~v~---~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (789)
...|........... -+|..- ....-..+.++|||++|+.. ..
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~-dl-------------------------------- 163 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP-DL-------------------------------- 163 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE-ET--------------------------------
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE-ec--------------------------------
Confidence 655665554332100 000000 00012478999999987543 32
Q ss_pred CCcccccCCccCceEEEEEccCCc--eEecc--CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcc
Q 003886 261 EDWGETYAGKRQPSLFVININSGE--VQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 336 (789)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~--~~~l~--~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~ 336 (789)
+...|++++++.+. +.... ..+.......++|+|||+. +|+.++.. ..
T Consensus 164 ----------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~-----~Yv~~e~s-------------~~ 215 (345)
T PF10282_consen 164 ----------GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKY-----AYVVNELS-------------NT 215 (345)
T ss_dssp ----------TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSE-----EEEEETTT-------------TE
T ss_pred ----------CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCE-----EEEecCCC-------------Cc
Confidence 22456776665543 43311 1355556789999999985 66664433 24
Q ss_pred eEEEecccccchhhhhhhhcCCCCCCCeee------cCCC---CCccCcceecCCCCEEEEEecCCCCCCCCccccceeE
Q 003886 337 LYAVRVSLYKSEASELELKESSSEDLPVVN------LTES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLH 407 (789)
Q Consensus 337 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------Lt~~---~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~ 407 (789)
|..+++.. ..+..+. +... .......++||||++| |++++. .+.|.
T Consensus 216 v~v~~~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~l-yvsnr~---------~~sI~ 270 (345)
T PF10282_consen 216 VSVFDYDP---------------SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFL-YVSNRG---------SNSIS 270 (345)
T ss_dssp EEEEEEET---------------TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEE-EEEECT---------TTEEE
T ss_pred EEEEeecc---------------cCCceeEEEEeeeccccccccCCceeEEEecCCCEE-EEEecc---------CCEEE
Confidence 55555520 1222211 1111 1135678899999976 566664 34677
Q ss_pred EeecCC--CCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003886 408 RIDWPT--NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (789)
Q Consensus 408 ~~d~~~--~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt 484 (789)
+++++. +... .+..+.. ...+| ..+.++|||++|++.....+...+|.+|.++|.++.+.
T Consensus 271 vf~~d~~~g~l~--------~~~~~~~--~G~~P-------r~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 271 VFDLDPATGTLT--------LVQTVPT--GGKFP-------RHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEECTTTTTEE--------EEEEEEE--SSSSE-------EEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCceE--------EEEEEeC--CCCCc-------cEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 777743 2221 1111111 12222 36678999999988777778899999999999987764
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PLN03084 alpha/beta hydrolase fold protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.5e-10 Score=119.21 Aligned_cols=107 Identities=23% Similarity=0.332 Sum_probs=79.8
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
..|.||++||.+.+ ...|......|++ +|.|+++|++| +|.+..... .......++++.+.+..++++ +..
T Consensus 126 ~~~~ivllHG~~~~--~~~w~~~~~~L~~-~~~Via~DlpG---~G~S~~p~~-~~~~~ys~~~~a~~l~~~i~~--l~~ 196 (383)
T PLN03084 126 NNPPVLLIHGFPSQ--AYSYRKVLPVLSK-NYHAIAFDWLG---FGFSDKPQP-GYGFNYTLDEYVSSLESLIDE--LKS 196 (383)
T ss_pred CCCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCC---CCCCCCCcc-cccccCCHHHHHHHHHHHHHH--hCC
Confidence 35789999997764 5577777777764 79999999998 565432211 011134566777766666665 345
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
+++.|+|||+||.+++.++.++|++++++|+.+|..
T Consensus 197 ~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~ 232 (383)
T PLN03084 197 DKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPL 232 (383)
T ss_pred CCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCC
Confidence 689999999999999999999999999999999864
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-09 Score=103.73 Aligned_cols=267 Identities=16% Similarity=0.169 Sum_probs=157.9
Q ss_pred ceeEEEEEEeecCCCC----ccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEec-C
Q 003886 125 RKKFMLSTVISKENEN----SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHV-P 197 (789)
Q Consensus 125 ~~~~l~~~~~~~~~~~----~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~-~ 197 (789)
+.+.+..+.+..+..+ .++++.+. ..+...+.|+||++.+-.+.+. ...+| .+|+..+.+.. .
T Consensus 36 rDk~ii~W~L~~dd~~~G~~~r~~~GHs-----H~v~dv~~s~dg~~alS~swD~-----~lrlWDl~~g~~t~~f~GH~ 105 (315)
T KOG0279|consen 36 RDKTIIVWKLTSDDIKYGVPVRRLTGHS-----HFVSDVVLSSDGNFALSASWDG-----TLRLWDLATGESTRRFVGHT 105 (315)
T ss_pred cceEEEEEEeccCccccCceeeeeeccc-----eEecceEEccCCceEEeccccc-----eEEEEEecCCcEEEEEEecC
Confidence 3445566666444332 24454433 2477889999999987665543 67778 45565555543 4
Q ss_pred CCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCC-CCCCCcceeeCCccccc--CCccCce
Q 003886 198 QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDC-NSWKGQGDWEEDWGETY--AGKRQPS 274 (789)
Q Consensus 198 ~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~g~~~--~~~~~~~ 274 (789)
.++ .++++|||.++|+..+.+++.. .|+....-.-....+. ..|+....|+|.-.+.+ ...-+..
T Consensus 106 ~dV----------lsva~s~dn~qivSGSrDkTik--lwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dkt 173 (315)
T KOG0279|consen 106 KDV----------LSVAFSTDNRQIVSGSRDKTIK--LWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKT 173 (315)
T ss_pred Cce----------EEEEecCCCceeecCCCcceee--eeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCce
Confidence 444 7999999999999888776543 3432111000111122 67888888888743322 2334678
Q ss_pred EEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhh
Q 003886 275 LFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELEL 354 (789)
Q Consensus 275 l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 354 (789)
+.+||+.+-+++.-- ......+..++.||||.. +++.+ ..+.++++|+.
T Consensus 174 vKvWnl~~~~l~~~~-~gh~~~v~t~~vSpDGsl----casGg---------------kdg~~~LwdL~----------- 222 (315)
T KOG0279|consen 174 VKVWNLRNCQLRTTF-IGHSGYVNTVTVSPDGSL----CASGG---------------KDGEAMLWDLN----------- 222 (315)
T ss_pred EEEEccCCcchhhcc-ccccccEEEEEECCCCCE----EecCC---------------CCceEEEEEcc-----------
Confidence 999999887776551 223447789999999997 77654 34578899983
Q ss_pred hcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccC
Q 003886 355 KESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAE 434 (789)
Q Consensus 355 ~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~ 434 (789)
++..+..| +....+.+..|||.--+|+-... ..|.+||++++....- ...+.+-+-..
T Consensus 223 -----~~k~lysl-~a~~~v~sl~fspnrywL~~at~------------~sIkIwdl~~~~~v~~-l~~d~~g~s~~--- 280 (315)
T KOG0279|consen 223 -----EGKNLYSL-EAFDIVNSLCFSPNRYWLCAATA------------TSIKIWDLESKAVVEE-LKLDGIGPSSK--- 280 (315)
T ss_pred -----CCceeEec-cCCCeEeeEEecCCceeEeeccC------------CceEEEeccchhhhhh-ccccccccccc---
Confidence 33333333 33456888999998655543332 2489999988654311 01100000000
Q ss_pred CCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 435 GDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 435 ~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
-.+.+| ..++|++||.+| |....++..++|.+
T Consensus 281 ---~~~~~c---lslaws~dG~tL-f~g~td~~irv~qv 312 (315)
T KOG0279|consen 281 ---AGDPIC---LSLAWSADGQTL-FAGYTDNVIRVWQV 312 (315)
T ss_pred ---cCCcEE---EEEEEcCCCcEE-EeeecCCcEEEEEe
Confidence 000111 356899999988 45555555566654
|
|
| >PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.4e-10 Score=112.65 Aligned_cols=160 Identities=19% Similarity=0.216 Sum_probs=88.8
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHH-HHHHCCcEEEEEcCCC---CCCCCc---hhhccCCCCC-CcccHHHHH---
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRG---SLGFGE---EALQSLPGKV-GSQDVNDVL--- 656 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~-~la~~Gy~V~~~d~rG---s~G~G~---~~~~~~~~~~-~~~~~~D~~--- 656 (789)
..++.|+||++||.+.+ ...+..... .+......+++++-+- ....|. .|........ ...+.+++.
T Consensus 10 ~~~~~~lvi~LHG~G~~--~~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~ 87 (216)
T PF02230_consen 10 KGKAKPLVILLHGYGDS--EDLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESA 87 (216)
T ss_dssp SST-SEEEEEE--TTS---HHHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHH
T ss_pred CCCCceEEEEECCCCCC--cchhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHH
Confidence 46789999999996553 333332222 2234567788776531 011122 3332211111 112233333
Q ss_pred ----HHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCcccc
Q 003886 657 ----TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 732 (789)
Q Consensus 657 ----~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (789)
+.++..++.+ ++.+||.++|+|.||.+++.++.++|+.+.++|+.+|.......
T Consensus 88 ~~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~--------------------- 145 (216)
T PF02230_consen 88 ERLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESE--------------------- 145 (216)
T ss_dssp HHHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCC---------------------
T ss_pred HHHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccc---------------------
Confidence 3333333334 89999999999999999999999999999999999986521100
Q ss_pred ccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 733 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 733 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
. .. . ..... ++|++++||.+|++||.+.+++.++.|++.
T Consensus 146 ------~-~~-------~-~~~~~--~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~ 184 (216)
T PF02230_consen 146 ------L-ED-------R-PEALA--KTPILIIHGDEDPVVPFEWAEKTAEFLKAA 184 (216)
T ss_dssp ------C-HC-------C-HCCCC--TS-EEEEEETT-SSSTHHHHHHHHHHHHCT
T ss_pred ------c-cc-------c-ccccC--CCcEEEEecCCCCcccHHHHHHHHHHHHhc
Confidence 0 00 0 00111 689999999999999999999999988653
|
; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A. |
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=8e-09 Score=100.54 Aligned_cols=263 Identities=13% Similarity=0.140 Sum_probs=162.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecC--CceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ--SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
+-+....||+|+++|+-.+..+ .+.||+. ......+.++. .|+...++||.|+.||...-+..-
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqDG-----klIvWDs~TtnK~haipl~s---------~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQDG-----KLIVWDSFTTNKVHAIPLPS---------SWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred cceeeeEecCCcCeEEeeccCC-----eEEEEEcccccceeEEecCc---------eeEEEEEECCCCCeEEecCcCcee
Confidence 4588899999999999887765 6778853 33333333322 255899999999999986544311
Q ss_pred CCCCccCCCC------CCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC-CccceEEEee
Q 003886 232 SKPTFSLGST------KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAP 304 (789)
Q Consensus 232 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSP 304 (789)
..+..... +..+....+..|...-.|.+| +..+++.++....+||+++|+.... ..++ ..+-.+..+|
T Consensus 122 --siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~--f~GH~gDV~slsl~p 196 (343)
T KOG0286|consen 122 --SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQV--FHGHTGDVMSLSLSP 196 (343)
T ss_pred --EEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEE--ecCCcccEEEEecCC
Confidence 11111111 111223445555555556665 5677788899999999999987665 3333 3567889999
Q ss_pred -CCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCC
Q 003886 305 -LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDG 383 (789)
Q Consensus 305 -Dg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG 383 (789)
|++. .+-.+- +..-+++|++ ++.-.+....+...+...+|-|+|
T Consensus 197 ~~~nt----FvSg~c---------------D~~aklWD~R----------------~~~c~qtF~ghesDINsv~ffP~G 241 (343)
T KOG0286|consen 197 SDGNT----FVSGGC---------------DKSAKLWDVR----------------SGQCVQTFEGHESDINSVRFFPSG 241 (343)
T ss_pred CCCCe----EEeccc---------------ccceeeeecc----------------CcceeEeecccccccceEEEccCC
Confidence 8887 444331 1245566762 344455667778889999999999
Q ss_pred CEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEE
Q 003886 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 463 (789)
Q Consensus 384 ~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (789)
..++..+.+. ...++|+..+....+-..... ..++.++.||..|+ |+|...
T Consensus 242 ~afatGSDD~-----------tcRlyDlRaD~~~a~ys~~~~-----------------~~gitSv~FS~SGR-lLfagy 292 (343)
T KOG0286|consen 242 DAFATGSDDA-----------TCRLYDLRADQELAVYSHDSI-----------------ICGITSVAFSKSGR-LLFAGY 292 (343)
T ss_pred CeeeecCCCc-----------eeEEEeecCCcEEeeeccCcc-----------------cCCceeEEEccccc-EEEeee
Confidence 9776655442 356678777554322211100 02356788999998 556665
Q ss_pred eCCeEEEEEEECCCCcEEEecCCC-CCceeEEeeecCCE
Q 003886 464 WGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDN 501 (789)
Q Consensus 464 ~~~~~~l~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg~~ 501 (789)
.+.+.++ +|.-.++..-+..++ ..++-..++|||--
T Consensus 293 ~d~~c~v--WDtlk~e~vg~L~GHeNRvScl~~s~DG~a 329 (343)
T KOG0286|consen 293 DDFTCNV--WDTLKGERVGVLAGHENRVSCLGVSPDGMA 329 (343)
T ss_pred cCCceeE--eeccccceEEEeeccCCeeEEEEECCCCcE
Confidence 5554444 465456555444443 34555667777653
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.1e-08 Score=97.94 Aligned_cols=271 Identities=12% Similarity=0.173 Sum_probs=152.3
Q ss_pred CCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003886 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (789)
Q Consensus 105 spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (789)
+|+++++ |+....+ ....+-.+.++...++...+.... +........+.++||++|+...... +.-.++.+
T Consensus 48 ~~~~~~L-Y~v~~~~-----~~ggvaay~iD~~~G~Lt~ln~~~--~~g~~p~yvsvd~~g~~vf~AnY~~-g~v~v~p~ 118 (346)
T COG2706 48 NPDQRHL-YVVNEPG-----EEGGVAAYRIDPDDGRLTFLNRQT--LPGSPPCYVSVDEDGRFVFVANYHS-GSVSVYPL 118 (346)
T ss_pred CCCCCEE-EEEEecC-----CcCcEEEEEEcCCCCeEEEeeccc--cCCCCCeEEEECCCCCEEEEEEccC-ceEEEEEc
Confidence 4666655 5544332 233455555554444332221111 1112246789999999987665543 44445555
Q ss_pred ecCCceeEEEecCCCccccccCC-C--cccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeC
Q 003886 185 WSQSQLEKEFHVPQTVHGSVYAD-G--WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 261 (789)
Q Consensus 185 ~~~~~~~~~~~~~~~~~g~v~~d-~--~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (789)
..+|.....++..........+. + -.....+.||++.|+...-
T Consensus 119 ~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL---------------------------------- 164 (346)
T COG2706 119 QADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL---------------------------------- 164 (346)
T ss_pred ccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec----------------------------------
Confidence 45565544433211110000000 0 0146779999987765421
Q ss_pred CcccccCCccCceEEEEEccCCceEecc--CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEE
Q 003886 262 DWGETYAGKRQPSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339 (789)
Q Consensus 262 d~g~~~~~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~ 339 (789)
+...|++++++.|+..... ..........++|+|+|| ++|+.++-. ....+|.
T Consensus 165 ---------G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k-----~aY~v~EL~-----------stV~v~~ 219 (346)
T COG2706 165 ---------GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGK-----YAYLVNELN-----------STVDVLE 219 (346)
T ss_pred ---------CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCc-----EEEEEeccC-----------CEEEEEE
Confidence 2356888888888765542 123345677999999999 577664322 1224555
Q ss_pred EecccccchhhhhhhhcCCCCCCCeeecCC---------CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEee
Q 003886 340 VRVSLYKSEASELELKESSSEDLPVVNLTE---------SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 410 (789)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~---------~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d 410 (789)
++- ..++.++|.. +.........||||++| |.+++. .+.|.++.
T Consensus 220 y~~-----------------~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFL-YasNRg---------~dsI~~f~ 272 (346)
T COG2706 220 YNP-----------------AVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFL-YASNRG---------HDSIAVFS 272 (346)
T ss_pred EcC-----------------CCceEEEeeeeccCccccCCCCceeEEEECCCCCEE-EEecCC---------CCeEEEEE
Confidence 553 3344444321 23346778999999976 678774 23565554
Q ss_pred cCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecC
Q 003886 411 WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 485 (789)
Q Consensus 411 ~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~ 485 (789)
+.....+ + .++. ..+.++.+| ..+.++++|+.|++.........+|.+|..||++..+..
T Consensus 273 V~~~~g~-L-----~~~~--~~~teg~~P-------R~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 273 VDPDGGK-L-----ELVG--ITPTEGQFP-------RDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred EcCCCCE-E-----EEEE--EeccCCcCC-------ccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 4332211 0 0111 112222333 466789999999888777788999999999999988754
|
|
| >TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.3e-09 Score=119.23 Aligned_cols=123 Identities=14% Similarity=0.222 Sum_probs=81.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhh---HHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccH
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY---SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~---~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~ 652 (789)
++-+.|.|.. +....+.||++||.......... ...+.+|+++||.|+++|+|| +|.+... ..+.....
T Consensus 174 ~eLi~Y~P~t--~~~~~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrg---pg~s~~~---~~~ddY~~ 245 (532)
T TIGR01838 174 FQLIQYEPTT--ETVHKTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRN---PDASQAD---KTFDDYIR 245 (532)
T ss_pred EEEEEeCCCC--CcCCCCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCC---CCccccc---CChhhhHH
Confidence 4555666752 22244567788995443222211 246789999999999999997 3332211 11222334
Q ss_pred HHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHH----HHHHhC-CCceeEEEEeCCccch
Q 003886 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT----HLIGQA-PDKFVAAAARNPLCNL 708 (789)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~----~~~~~~-p~~~~a~v~~~pv~~~ 708 (789)
+++.++++++.+. .+.+++.++|||+||.+++ .++..+ +++++++++.+..+|+
T Consensus 246 ~~i~~al~~v~~~--~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df 304 (532)
T TIGR01838 246 DGVIAALEVVEAI--TGEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDF 304 (532)
T ss_pred HHHHHHHHHHHHh--cCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCC
Confidence 5688899998875 4678999999999999852 234444 7789999988876664
|
This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.2e-09 Score=109.34 Aligned_cols=268 Identities=12% Similarity=0.056 Sum_probs=166.2
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCC--CCEEEEEeecCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPS 230 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpD--g~~la~~~~~~~ 230 (789)
.+....||+||+.||..+-.+ ...+|. +++..+.+.. ..+.+ .++.|+|. +..||..+.+..
T Consensus 177 Pis~~~fS~ds~~laT~swsG-----~~kvW~~~~~~~~~~l~g---H~~~v------~~~~fhP~~~~~~lat~s~Dgt 242 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSWSG-----LVKVWSVPQCNLLQTLRG---HTSRV------GAAVFHPVDSDLNLATASADGT 242 (459)
T ss_pred cceeeEeecCCCeEEEeecCC-----ceeEeecCCcceeEEEec---cccce------eeEEEccCCCccceeeeccCCc
Confidence 367788999999999877653 456662 2333333322 22222 78999997 678998888876
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003886 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
.. .|.............+..-+....|.|++.-..+..-+..=-+||+.++....+. -..+..+.+.+|.|||.-
T Consensus 243 vk--lw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q-EGHs~~v~~iaf~~DGSL-- 317 (459)
T KOG0272|consen 243 VK--LWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ-EGHSKGVFSIAFQPDGSL-- 317 (459)
T ss_pred ee--eeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh-cccccccceeEecCCCce--
Confidence 54 3332222222333444444556678887654444444555667999988655442 122347889999999984
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEe
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s 390 (789)
++-.+.+. -=.++|+. .+..+-.|..+...+....|||+|-.||..+
T Consensus 318 --~~tGGlD~---------------~~RvWDlR----------------tgr~im~L~gH~k~I~~V~fsPNGy~lATgs 364 (459)
T KOG0272|consen 318 --AATGGLDS---------------LGRVWDLR----------------TGRCIMFLAGHIKEILSVAFSPNGYHLATGS 364 (459)
T ss_pred --eeccCccc---------------hhheeecc----------------cCcEEEEecccccceeeEeECCCceEEeecC
Confidence 44333211 12244552 3344557777888899999999999998877
Q ss_pred cCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEE
Q 003886 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (789)
Q Consensus 391 ~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (789)
.+. .+.+||+.......+.....+ -+..+.|+|++...++++..++..+|
T Consensus 365 ~Dn-----------t~kVWDLR~r~~ly~ipAH~n-------------------lVS~Vk~~p~~g~fL~TasyD~t~ki 414 (459)
T KOG0272|consen 365 SDN-----------TCKVWDLRMRSELYTIPAHSN-------------------LVSQVKYSPQEGYFLVTASYDNTVKI 414 (459)
T ss_pred CCC-----------cEEEeeecccccceecccccc-------------------hhhheEecccCCeEEEEcccCcceee
Confidence 553 578888876444322222222 24577899977778888888888999
Q ss_pred EEEECCCCcEEEecCCC-CCceeEEeeecCCEEEEEE
Q 003886 471 ISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 471 ~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~ 506 (789)
|.- .+....+...++ +.+-...+++|++.++...
T Consensus 415 Ws~--~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 415 WST--RTWSPLKSLAGHEGKVISLDISPDSQAIATSS 449 (459)
T ss_pred ecC--CCcccchhhcCCccceEEEEeccCCceEEEec
Confidence 863 355544444443 3333346777877665443
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-08 Score=99.21 Aligned_cols=284 Identities=14% Similarity=0.151 Sum_probs=174.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
+.+....|+|||..+|.. +..+.+.+|. .+..+..-. ..+..|+| .++.|++|+..|+..+.++...
T Consensus 48 geI~~~~F~P~gs~~aSg-----G~Dr~I~LWnv~gdceN~~~-lkgHsgAV------M~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFASG-----GSDRAIVLWNVYGDCENFWV-LKGHSGAV------MELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred ceEEEEEECCCCCeEeec-----CCcceEEEEeccccccceee-ecccccee------EeeeeccCCCEEEEecCCceEE
Confidence 568889999999999864 3445677883 444333322 33556666 8999999999999988877544
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCccccc--CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY--AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~--~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
.|+...++...+.+.+........ ..+-|.++ ++..+.++.+||..+.+..++ .........+.|.-++..
T Consensus 116 --~wD~~tG~~~rk~k~h~~~vNs~~-p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t--~~~kyqltAv~f~d~s~q-- 188 (338)
T KOG0265|consen 116 --GWDAETGKRIRKHKGHTSFVNSLD-PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT--FENKYQLTAVGFKDTSDQ-- 188 (338)
T ss_pred --EEecccceeeehhccccceeeecC-ccccCCeEEEecCCCceEEEEeecccchhhc--cccceeEEEEEecccccc--
Confidence 345444444444443333322111 11112221 233467899999987766655 455667889999999998
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEe
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s 390 (789)
+...+ -+.+|-.+|+. ...-...|+.+...+.....||+|..|.-.+
T Consensus 189 --v~sgg---------------Idn~ikvWd~r----------------~~d~~~~lsGh~DtIt~lsls~~gs~llsns 235 (338)
T KOG0265|consen 189 --VISGG---------------IDNDIKVWDLR----------------KNDGLYTLSGHADTITGLSLSRYGSFLLSNS 235 (338)
T ss_pred --eeecc---------------ccCceeeeccc----------------cCcceEEeecccCceeeEEeccCCCcccccc
Confidence 55444 22367777773 3334567777788899999999999998777
Q ss_pred cCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeee-ccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEE
Q 003886 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ-CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (789)
Q Consensus 391 ~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~-~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (789)
++. .+.+||...-.. ... .+.+.. .... ++-.+...+|||+++.+-+- ...+.
T Consensus 236 Md~-----------tvrvwd~rp~~p-----~~R-~v~if~g~~hn------feknlL~cswsp~~~~i~ag---s~dr~ 289 (338)
T KOG0265|consen 236 MDN-----------TVRVWDVRPFAP-----SQR-CVKIFQGHIHN------FEKNLLKCSWSPNGTKITAG---SADRF 289 (338)
T ss_pred ccc-----------eEEEEEecccCC-----CCc-eEEEeecchhh------hhhhcceeeccCCCCccccc---cccce
Confidence 664 577887643111 111 111111 1111 22245677899999966543 34567
Q ss_pred EEEEECCCCcEEEecCCC-CCceeEEeeecCCEEEEEEeCCCCCCeEEEEe
Q 003886 470 IISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 519 (789)
Q Consensus 470 l~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~ 519 (789)
+|++|..+..+....+++ +.+....|.|... |+.++++..+ ||+..
T Consensus 290 vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~-iils~~sdk~---i~lge 336 (338)
T KOG0265|consen 290 VYVWDTTSRRILYKLPGHYGSVNEVDFHPTEP-IILSCSSDKT---IYLGE 336 (338)
T ss_pred EEEeecccccEEEEcCCcceeEEEeeecCCCc-EEEEeccCce---eEeec
Confidence 899997665555444444 3455557777655 4555555554 66654
|
|
| >PRK08775 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.7e-10 Score=118.97 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=56.5
Q ss_pred HHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCcc-EEEEEcCccHHHHHHHHHhCCC
Q 003886 616 FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPD 694 (789)
Q Consensus 616 ~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r-v~l~G~S~GG~~a~~~~~~~p~ 694 (789)
.|...+|.|+++|+|| +|.+.. . ....++..+.+..+++. ++.++ +.|+||||||++++.++.++|+
T Consensus 94 ~L~~~~~~Vi~~Dl~G---~g~s~~----~---~~~~~~~a~dl~~ll~~--l~l~~~~~lvG~SmGG~vA~~~A~~~P~ 161 (343)
T PRK08775 94 ALDPARFRLLAFDFIG---ADGSLD----V---PIDTADQADAIALLLDA--LGIARLHAFVGYSYGALVGLQFASRHPA 161 (343)
T ss_pred ccCccccEEEEEeCCC---CCCCCC----C---CCCHHHHHHHHHHHHHH--cCCCcceEEEEECHHHHHHHHHHHHChH
Confidence 3545679999999998 444321 1 12244555555555554 34445 4799999999999999999999
Q ss_pred ceeEEEEeCCcc
Q 003886 695 KFVAAAARNPLC 706 (789)
Q Consensus 695 ~~~a~v~~~pv~ 706 (789)
+++++|+.++..
T Consensus 162 ~V~~LvLi~s~~ 173 (343)
T PRK08775 162 RVRTLVVVSGAH 173 (343)
T ss_pred hhheEEEECccc
Confidence 999999998754
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.8e-08 Score=111.93 Aligned_cols=274 Identities=14% Similarity=0.081 Sum_probs=157.8
Q ss_pred EEEEeCCCCCeEEEEecCCC-CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 157 SAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~-~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
...++||||++|||..+.++ +...+++++ .+|+...-. +.... +..+.|++||+.++|...+......
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~~~---------~~~~~W~~d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IENPK---------FSSVSWSDDGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEEEE---------SEEEEECTTSSEEEEEECSTTTSS-
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccccc---------cceEEEeCCCCEEEEEEeCcccccc
Confidence 35789999999999865542 445566666 455332211 11111 1349999999999999776532100
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceE--eccCCCC-CCccceEEEeeCCCCCcc
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ--AVKGIPK-SLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~--~l~~~~~-~~~~~~~~wSPDg~~~~~ 311 (789)
.......|+.+.+.++... .+...+. ....-.+.+|+||+.
T Consensus 197 ---------------------------------~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~--- 240 (414)
T PF02897_consen 197 ---------------------------------DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRY--- 240 (414)
T ss_dssp ---------------------------------CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSE---
T ss_pred ---------------------------------cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccE---
Confidence 0112467999999887543 3321122 222447789999998
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEec
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
|+..+.+... .+.+|++++.... ......+.|.......... +...|..+++.++
T Consensus 241 -l~i~~~~~~~-----------~s~v~~~d~~~~~------------~~~~~~~~l~~~~~~~~~~-v~~~~~~~yi~Tn 295 (414)
T PF02897_consen 241 -LFISSSSGTS-----------ESEVYLLDLDDGG------------SPDAKPKLLSPREDGVEYY-VDHHGDRLYILTN 295 (414)
T ss_dssp -EEEEEESSSS-----------EEEEEEEECCCTT------------TSS-SEEEEEESSSS-EEE-EEEETTEEEEEE-
T ss_pred -EEEEEEcccc-----------CCeEEEEeccccC------------CCcCCcEEEeCCCCceEEE-EEccCCEEEEeeC
Confidence 7766643321 2479999983100 0123556665433222221 1222778888887
Q ss_pred CCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 392 ~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
.+. ...+|..+++...... ....+ ++.. .++ ..--.+...+++|++....++...|.
T Consensus 296 ~~a-------~~~~l~~~~l~~~~~~----~~~~~--l~~~-~~~---------~~l~~~~~~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 296 DDA-------PNGRLVAVDLADPSPA----EWWTV--LIPE-DED---------VSLEDVSLFKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp TT--------TT-EEEEEETTSTSGG----GEEEE--EE---SSS---------EEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred CCC-------CCcEEEEecccccccc----cceeE--EcCC-CCc---------eeEEEEEEECCEEEEEEEECCccEEE
Confidence 652 3468999998765421 11101 1110 000 00112445677899998999999999
Q ss_pred EEECC-CCcEEEecCCCC-CceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 003886 472 SVNVS-SGELLRITPAES-NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 524 (789)
Q Consensus 472 ~~dl~-tg~~~~lt~~~~-~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~ 524 (789)
++++. +.....+..... .+.......+++.+.+..+++.+|+.+|.+|+.+++
T Consensus 353 v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 353 VYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 99998 555555544332 222333446788999999999999999999988664
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-08 Score=105.13 Aligned_cols=266 Identities=17% Similarity=0.210 Sum_probs=149.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
..+....|+|+|+.|++....+ ...+| ..++.......... .+ ..+.|+|+++.|+..+.+...
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g-----~i~i~~~~~~~~~~~~~~~~~---~i------~~~~~~~~~~~l~~~~~~~~i 75 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDG-----TIKVWDLETGELLRTLKGHTG---PV------RDVAASADGTYLASGSSDKTI 75 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCc-----EEEEEEeeCCCcEEEEecCCc---ce------eEEEECCCCCEEEEEcCCCeE
Confidence 4578899999999999876532 34444 23332222222111 11 588999999988887764432
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCc-cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGK-RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~-~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
. .|+............+........|.++ +..+... ....|.+||+.+++..... ......+..+.|+|+++.
T Consensus 76 ~--i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~-- 149 (289)
T cd00200 76 R--LWDLETGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTL-RGHTDWVNSVAFSPDGTF-- 149 (289)
T ss_pred E--EEEcCcccceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEe-ccCCCcEEEEEEcCcCCE--
Confidence 1 2332221111112222222333456655 3333333 3788999999876654431 223335778999999764
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEe
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s 390 (789)
++++. ....|+++|+. .......+..+...+....|+|+|+.|++.+
T Consensus 150 ---l~~~~--------------~~~~i~i~d~~----------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 196 (289)
T cd00200 150 ---VASSS--------------QDGTIKLWDLR----------------TGKCVATLTGHTGEVNSVAFSPDGEKLLSSS 196 (289)
T ss_pred ---EEEEc--------------CCCcEEEEEcc----------------ccccceeEecCccccceEEECCCcCEEEEec
Confidence 44442 12368888872 2223344445555688899999999888877
Q ss_pred cCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEE
Q 003886 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (789)
Q Consensus 391 ~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (789)
.+ ..+.+||+.++.......... ..+..+.|++++. +++.+..++. |
T Consensus 197 ~~-----------~~i~i~d~~~~~~~~~~~~~~-------------------~~i~~~~~~~~~~-~~~~~~~~~~--i 243 (289)
T cd00200 197 SD-----------GTIKLWDLSTGKCLGTLRGHE-------------------NGVNSVAFSPDGY-LLASGSEDGT--I 243 (289)
T ss_pred CC-----------CcEEEEECCCCceecchhhcC-------------------CceEEEEEcCCCc-EEEEEcCCCc--E
Confidence 53 258899987644322111100 1234567999865 5555543444 5
Q ss_pred EEEECCCCcEEEecCCC-CCceeEEeeecCCEEEEE
Q 003886 471 ISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAV 505 (789)
Q Consensus 471 ~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~ 505 (789)
+.+|+.+++........ .......++++++.++..
T Consensus 244 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (289)
T cd00200 244 RVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASG 279 (289)
T ss_pred EEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEe
Confidence 55566666554443332 234445677776655543
|
|
| >COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.8e-10 Score=110.14 Aligned_cols=128 Identities=23% Similarity=0.226 Sum_probs=94.7
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHH-HCCcEEEEEcCCCCCCCCchhhccCCC-----
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPG----- 645 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la-~~Gy~V~~~d~rGs~G~G~~~~~~~~~----- 645 (789)
+|...++++|.|.+.+ ++.|+||++||+.++.....-..-+..++ ..||.|+.||- +...+......
T Consensus 43 ~g~~r~y~l~vP~g~~--~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPdg-----~~~~wn~~~~~~~~~p 115 (312)
T COG3509 43 NGLKRSYRLYVPPGLP--SGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPDG-----YDRAWNANGCGNWFGP 115 (312)
T ss_pred CCCccceEEEcCCCCC--CCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcCc-----cccccCCCcccccCCc
Confidence 5677899999998753 33499999999777532221111234555 68999999963 33333211111
Q ss_pred ---CCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 646 ---KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 646 ---~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
.-+..|+..+.+.++.++.+..||+.||.|.|.|.||.|+.+++..+|++|.++..+++..
T Consensus 116 ~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 116 ADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred ccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 2344567888889999999888999999999999999999999999999999998887754
|
|
| >PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-09 Score=107.89 Aligned_cols=114 Identities=22% Similarity=0.265 Sum_probs=90.1
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHH
Q 003886 578 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT 657 (789)
Q Consensus 578 ~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~ 657 (789)
-.++.|. ..+.||+|||+||.. .....|....+.+++.||+|+.+|+....+ .-...++++..+
T Consensus 6 l~v~~P~---~~g~yPVv~f~~G~~--~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~-----------~~~~~~~~~~~~ 69 (259)
T PF12740_consen 6 LLVYYPS---SAGTYPVVLFLHGFL--LINSWYSQLLEHVASHGYIVVAPDLYSIGG-----------PDDTDEVASAAE 69 (259)
T ss_pred eEEEecC---CCCCcCEEEEeCCcC--CCHHHHHHHHHHHHhCceEEEEecccccCC-----------CCcchhHHHHHH
Confidence 3477787 567899999999965 334457788899999999999999654222 122345788899
Q ss_pred HHHHHHHc--C------CCCCccEEEEEcCccHHHHHHHHHhC-----CCceeEEEEeCCccc
Q 003886 658 AIDHVIDM--G------LANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLCN 707 (789)
Q Consensus 658 ~i~~l~~~--~------~~d~~rv~l~G~S~GG~~a~~~~~~~-----p~~~~a~v~~~pv~~ 707 (789)
.++|+.+. . .+|-+|++|+|||.||-++..++..+ +.+|+++++..||-.
T Consensus 70 vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG 132 (259)
T PF12740_consen 70 VIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDG 132 (259)
T ss_pred HHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccc
Confidence 99998762 1 25889999999999999999998876 458999999999974
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-09 Score=125.51 Aligned_cols=105 Identities=14% Similarity=0.265 Sum_probs=69.1
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCc
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~ 649 (789)
..+|..++...+-+ ...|.||++||.+.+ ...|......| ..||.|+++|+|| +|.+.... ....
T Consensus 9 ~~~g~~l~~~~~g~------~~~~~ivllHG~~~~--~~~w~~~~~~L-~~~~~Vi~~D~~G---~G~S~~~~---~~~~ 73 (582)
T PRK05855 9 SSDGVRLAVYEWGD------PDRPTVVLVHGYPDN--HEVWDGVAPLL-ADRFRVVAYDVRG---AGRSSAPK---RTAA 73 (582)
T ss_pred eeCCEEEEEEEcCC------CCCCeEEEEcCCCch--HHHHHHHHHHh-hcceEEEEecCCC---CCCCCCCC---cccc
Confidence 34778887665432 236899999997654 45677777777 6789999999998 55543221 1112
Q ss_pred ccHHHHHHHHHHHHHcCCCCCc-cEEEEEcCccHHHHHHHHHh
Q 003886 650 QDVNDVLTAIDHVIDMGLANPS-KVTVVGGSHGGFLTTHLIGQ 691 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~-rv~l~G~S~GG~~a~~~~~~ 691 (789)
...+++.+.+..+++. +... ++.|+|||+||.+++.++.+
T Consensus 74 ~~~~~~a~dl~~~i~~--l~~~~~~~lvGhS~Gg~~a~~~a~~ 114 (582)
T PRK05855 74 YTLARLADDFAAVIDA--VSPDRPVHLLAHDWGSIQGWEAVTR 114 (582)
T ss_pred cCHHHHHHHHHHHHHH--hCCCCcEEEEecChHHHHHHHHHhC
Confidence 2344555444444443 2233 49999999999999877765
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.7e-09 Score=116.75 Aligned_cols=104 Identities=12% Similarity=0.019 Sum_probs=73.7
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCC-----
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE----- 175 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~----- 175 (789)
.+..||||++++|+....+ ..+..++.||+.+. ++..++++.+. ....|+|||||++|+|+++.+
T Consensus 354 spaiSpdG~~vA~v~~~~~-~~~d~~s~Lwv~~~---gg~~~~lt~g~------~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 354 SAALSRSGRQVAAVVTLGR-GAPDPASSLWVGPL---GGVAVQVLEGH------SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cceECCCCCEEEEEEeecC-CCCCcceEEEEEeC---CCcceeeecCC------CCCCceECCCCCceEEEecCcceEEE
Confidence 4556899999999987666 33446789999875 33446776553 377899999999999997642
Q ss_pred ---CCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEe
Q 003886 176 ---NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 226 (789)
Q Consensus 176 ---~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~ 226 (789)
++..+++.++ +.++..+ .+...+ ..+.|||||++|||+.
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~--~~~g~I----------ssl~wSpDG~RiA~i~ 466 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS--RVPGPI----------SELQLSRDGVRAAMII 466 (591)
T ss_pred eccCCCceEEEEeccCchhhh--ccCCCc----------CeEEECCCCCEEEEEE
Confidence 2344666666 4444433 333333 8999999999999985
|
|
| >COG2936 Predicted acyl esterases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-09 Score=116.97 Aligned_cols=131 Identities=18% Similarity=0.156 Sum_probs=102.4
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc----hhhHHHH--HHHHHCCcEEEEEcCCCCCCCCchhhcc
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL----SSYSKSL--AFLSSVGYSLLIVNYRGSLGFGEEALQS 642 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~----~~~~~~~--~~la~~Gy~V~~~d~rGs~G~G~~~~~~ 642 (789)
+-.||+.|..-+|+|. ..++.|+++..+-.|..... ....... ..++.+||+|+..|.||+.+....+..
T Consensus 25 ~MRDGvrL~~dIy~Pa---~~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~~SeG~~~~- 100 (563)
T COG2936 25 PMRDGVRLAADIYRPA---GAGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRGGSEGVFDP- 100 (563)
T ss_pred EecCCeEEEEEEEccC---CCCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccccCCcccce-
Confidence 3458999999999998 56899999999854544321 1111111 378999999999999997665544421
Q ss_pred CCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccch
Q 003886 643 LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708 (789)
Q Consensus 643 ~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~ 708 (789)
+...+.+|-.+.|+|+.++++.+ .+|+++|.||+|+..+++|+..|.-.||++...+..|.
T Consensus 101 ----~~~~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~ 161 (563)
T COG2936 101 ----ESSREAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDR 161 (563)
T ss_pred ----eccccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccccccc
Confidence 22257899999999999999765 68999999999999999999888889999998887774
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.4e-09 Score=106.48 Aligned_cols=237 Identities=12% Similarity=0.090 Sum_probs=149.7
Q ss_pred cccEEEEeCCC--CCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPS--GSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPd--G~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
+.+....|+|. +..||..+.++ ...+|.-.+...+.++.+.. ..+..++|.|+|+.|+..+.+.+=
T Consensus 218 ~~v~~~~fhP~~~~~~lat~s~Dg-----tvklw~~~~e~~l~~l~gH~-------~RVs~VafHPsG~~L~TasfD~tW 285 (459)
T KOG0272|consen 218 SRVGAAVFHPVDSDLNLATASADG-----TVKLWKLSQETPLQDLEGHL-------ARVSRVAFHPSGKFLGTASFDSTW 285 (459)
T ss_pred cceeeEEEccCCCccceeeeccCC-----ceeeeccCCCcchhhhhcch-------hhheeeeecCCCceeeecccccch
Confidence 56888999998 56777766543 45566222212222221111 012789999999999999988754
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCC-ccceEEEeeCCCCCc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL-SVGQVVWAPLNEGLH 310 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~-~~~~~~wSPDg~~~~ 310 (789)
+ .|+...+.+......+..-.....|.+|+.-..++.-+.-=.|||+.+|...-. ..++. .+..+.|||+|-.
T Consensus 286 R--lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~--L~gH~k~I~~V~fsPNGy~-- 359 (459)
T KOG0272|consen 286 R--LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMF--LAGHIKEILSVAFSPNGYH-- 359 (459)
T ss_pred h--hcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEE--ecccccceeeEeECCCceE--
Confidence 3 466666777777778888788888999954444444455566899999876554 34444 6789999999998
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecC-CCCEEEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSP-DGKFLVFL 389 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~Sp-DG~~la~~ 389 (789)
|+-.+. ++.+.++|+. .......+..+..-+...+|+| -|++|+..
T Consensus 360 --lATgs~---------------Dnt~kVWDLR----------------~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 360 --LATGSS---------------DNTCKVWDLR----------------MRSELYTIPAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred --EeecCC---------------CCcEEEeeec----------------ccccceecccccchhhheEecccCCeEEEEc
Confidence 776652 2234445552 2334556666777789999999 67777766
Q ss_pred ecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEE
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (789)
+.+. .+.+|.-.+........+... -+.++..++||..| .++..+....
T Consensus 407 syD~-----------t~kiWs~~~~~~~ksLaGHe~-------------------kV~s~Dis~d~~~i-~t~s~DRT~K 455 (459)
T KOG0272|consen 407 SYDN-----------TVKIWSTRTWSPLKSLAGHEG-------------------KVISLDISPDSQAI-ATSSFDRTIK 455 (459)
T ss_pred ccCc-----------ceeeecCCCcccchhhcCCcc-------------------ceEEEEeccCCceE-EEeccCceee
Confidence 6543 355555444333222222211 23355678899855 5666666666
Q ss_pred EEE
Q 003886 470 IIS 472 (789)
Q Consensus 470 l~~ 472 (789)
||.
T Consensus 456 LW~ 458 (459)
T KOG0272|consen 456 LWR 458 (459)
T ss_pred ecc
Confidence 763
|
|
| >COG2272 PnbA Carboxylesterase type B [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.5e-10 Score=118.46 Aligned_cols=132 Identities=23% Similarity=0.242 Sum_probs=93.6
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch-hhHHHHHHHHHCC-cEEEEEcCC-CCCCCCc--hhhccCC
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVG-YSLLIVNYR-GSLGFGE--EALQSLP 644 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~~~~~~~la~~G-y~V~~~d~r-Gs~G~G~--~~~~~~~ 644 (789)
+.|++.|. ++.|. ...++.|+||+||||...+... ........|+++| ++|+.+||| |--||=. ++. ...
T Consensus 76 sEDCL~LN--IwaP~--~~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGfL~~~~~~-~~~ 150 (491)
T COG2272 76 SEDCLYLN--IWAPE--VPAEKLPVMVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLD-TED 150 (491)
T ss_pred cccceeEE--eeccC--CCCCCCcEEEEEeccccccCCCcccccChHHHHhcCCEEEEEeCcccccceeeehhhcc-ccc
Confidence 44665554 77786 3567799999999988754333 2223567899998 999999999 6555521 111 001
Q ss_pred CCCCcccHHHHHHHHHHHHHc---CCCCCccEEEEEcCccHHHHHHHHHhCCC---ceeEEEEeCCccc
Q 003886 645 GKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCN 707 (789)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~~~~~p~---~~~a~v~~~pv~~ 707 (789)
......-+.|++.+++|+.++ -.-|+++|.|+|.|.|++.++.+++- |. +|+.+|+.+|-+.
T Consensus 151 ~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 151 AFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAAS 218 (491)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCC
Confidence 111123378999999999886 23699999999999999999988773 53 7888888887654
|
|
| >cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.4e-10 Score=127.09 Aligned_cols=131 Identities=25% Similarity=0.281 Sum_probs=95.8
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHC-C-cEEEEEcCC-CCCCCCchhhccCCCCC
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV-G-YSLLIVNYR-GSLGFGEEALQSLPGKV 647 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~-G-y~V~~~d~r-Gs~G~G~~~~~~~~~~~ 647 (789)
.|.+ ...++.|......++.|+||++|||+......... ....|+.. + ++|+.+||| |..|+.........+++
T Consensus 76 Edcl--~l~i~~p~~~~~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~n~ 152 (493)
T cd00312 76 EDCL--YLNVYTPKNTKPGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGNY 152 (493)
T ss_pred CcCC--eEEEEeCCCCCCCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCCCCCCcch
Confidence 3554 44577787544467899999999998754433322 33455544 3 999999999 88788665433334444
Q ss_pred CcccHHHHHHHHHHHHHc---CCCCCccEEEEEcCccHHHHHHHHHh--CCCceeEEEEeCCccc
Q 003886 648 GSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCN 707 (789)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~~~~--~p~~~~a~v~~~pv~~ 707 (789)
| +.|+.++++|+.++ -..|+++|.|+|+|.||+++.+++.. .+.+|+++|+.++...
T Consensus 153 g---~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~ 214 (493)
T cd00312 153 G---LKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSAL 214 (493)
T ss_pred h---HHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCcc
Confidence 4 78999999999875 23799999999999999999988875 2357999999988654
|
) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.5e-07 Score=99.75 Aligned_cols=279 Identities=17% Similarity=0.184 Sum_probs=148.3
Q ss_pred eEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecC--CCCCCeEEEEecC-CceeEEEecCCCcccc
Q 003886 127 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP--ENESPIQFELWSQ-SQLEKEFHVPQTVHGS 203 (789)
Q Consensus 127 ~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~--~~~~~~~~~i~~~-~~~~~~~~~~~~~~g~ 203 (789)
+.|..+.++.+.++...+.... ........++||+++.|+.+.+. +.+.-..|.+..+ +++..+-.....-.+.
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~---~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p 89 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVA---EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSP 89 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEE---ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCE
T ss_pred CcEEEEEEcCCCCCceEeeeec---CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCc
Confidence 4555555545544433222110 11345667899999998777664 2344445555544 6666555443111111
Q ss_pred ccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccC-
Q 003886 204 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS- 282 (789)
Q Consensus 204 v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~- 282 (789)
-.++.+|||+.|+.+... ...+.+++++.
T Consensus 90 -------~~i~~~~~g~~l~vany~-------------------------------------------~g~v~v~~l~~~ 119 (345)
T PF10282_consen 90 -------CHIAVDPDGRFLYVANYG-------------------------------------------GGSVSVFPLDDD 119 (345)
T ss_dssp -------EEEEECTTSSEEEEEETT-------------------------------------------TTEEEEEEECTT
T ss_pred -------EEEEEecCCCEEEEEEcc-------------------------------------------CCeEEEEEccCC
Confidence 358899999987664221 24566666654
Q ss_pred CceEecc--------CC----CCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 283 GEVQAVK--------GI----PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 283 g~~~~l~--------~~----~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
|.+.... +. .......++.++|||+. +|+.+... ..|+.+++..
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~-----v~v~dlG~-------------D~v~~~~~~~------ 175 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRF-----VYVPDLGA-------------DRVYVYDIDD------ 175 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSE-----EEEEETTT-------------TEEEEEEE-T------
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECCCCCE-----EEEEecCC-------------CEEEEEEEeC------
Confidence 4433220 00 11234568899999996 45653322 2577777621
Q ss_pred hhhhhcCCCCCCCee-----ecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceee
Q 003886 351 ELELKESSSEDLPVV-----NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 425 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~-----~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~ 425 (789)
.+++.. .+.. ........|+|||++++.+.... +.|.++++...... + ....
T Consensus 176 ---------~~~~l~~~~~~~~~~-G~GPRh~~f~pdg~~~Yv~~e~s----------~~v~v~~~~~~~g~-~--~~~~ 232 (345)
T PF10282_consen 176 ---------DTGKLTPVDSIKVPP-GSGPRHLAFSPDGKYAYVVNELS----------NTVSVFDYDPSDGS-L--TEIQ 232 (345)
T ss_dssp ---------TS-TEEEEEEEECST-TSSEEEEEE-TTSSEEEEEETTT----------TEEEEEEEETTTTE-E--EEEE
T ss_pred ---------CCceEEEeecccccc-CCCCcEEEEcCCcCEEEEecCCC----------CcEEEEeecccCCc-e--eEEE
Confidence 222221 2222 23467889999999876655432 45777777621111 0 0011
Q ss_pred EEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC--CC-CceeEEeeecCCEE
Q 003886 426 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA--ES-NFSWSLLTLDGDNI 502 (789)
Q Consensus 426 v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~-~~~~~~~s~dg~~l 502 (789)
.+... +. .+.+. .....+.++|||++||++....+...+|.+|..+|+++.+..- .+ ......++++|++|
T Consensus 233 ~~~~~--~~--~~~~~--~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l 306 (345)
T PF10282_consen 233 TISTL--PE--GFTGE--NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYL 306 (345)
T ss_dssp EEESC--ET--TSCSS--SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEE
T ss_pred Eeeec--cc--ccccc--CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEE
Confidence 11111 11 11110 0123567899999998877666777888888788888766332 12 23445788899988
Q ss_pred EEEEeCCCC
Q 003886 503 IAVSSSPVD 511 (789)
Q Consensus 503 ~~~~ss~~~ 511 (789)
+......+.
T Consensus 307 ~Va~~~s~~ 315 (345)
T PF10282_consen 307 YVANQDSNT 315 (345)
T ss_dssp EEEETTTTE
T ss_pred EEEecCCCe
Confidence 877655554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-08 Score=104.72 Aligned_cols=268 Identities=15% Similarity=0.175 Sum_probs=161.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
.++...+|+-||..||+....+ ..++| .+|.....+.. ..|+| ..+.|+-+|++|+-...+.+.
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G-----~~riw~~~G~l~~tl~~---HkgPI------~slKWnk~G~yilS~~vD~tt- 300 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDG-----EARIWNKDGNLISTLGQ---HKGPI------FSLKWNKKGTYILSGGVDGTT- 300 (524)
T ss_pred CCcceEEecCCCCeEEEeecCc-----EEEEEecCchhhhhhhc---cCCce------EEEEEcCCCCEEEeccCCccE-
Confidence 4588999999999999988765 67888 56655443332 23444 789999999999987666542
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCce-EeccCCCCCCccceEEEeeCCCCCcc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~-~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
..|+...+.....+.-+....-+.+|..+ .+-.....+..|+|+-+....+ ..+ +..+..+..+.|.|.|+-
T Consensus 301 -ilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~--~GH~g~V~alk~n~tg~L--- 373 (524)
T KOG0273|consen 301 -ILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTF--IGHHGEVNALKWNPTGSL--- 373 (524)
T ss_pred -EEEeccCceEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceee--ecccCceEEEEECCCCce---
Confidence 23332221111111111111122334322 1222223455677777755443 334 334557788999999996
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCE------
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF------ 385 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~------ 385 (789)
|+-.+.+. .|-++... +......|..+...+....|||+|.-
T Consensus 374 -LaS~SdD~---------------TlkiWs~~----------------~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~ 421 (524)
T KOG0273|consen 374 -LASCSDDG---------------TLKIWSMG----------------QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNM 421 (524)
T ss_pred -EEEecCCC---------------eeEeeecC----------------CCcchhhhhhhccceeeEeecCCCCccCCCcC
Confidence 66665322 33344431 44455666666667788899998862
Q ss_pred ---EEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEE
Q 003886 386 ---LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 462 (789)
Q Consensus 386 ---la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~ 462 (789)
|+..+-+ ..+.+||...+.....-.. ....++.+.|||||+++ .++
T Consensus 422 ~~~l~sas~d-----------stV~lwdv~~gv~i~~f~k-------------------H~~pVysvafS~~g~yl-AsG 470 (524)
T KOG0273|consen 422 NLMLASASFD-----------STVKLWDVESGVPIHTLMK-------------------HQEPVYSVAFSPNGRYL-ASG 470 (524)
T ss_pred CceEEEeecC-----------CeEEEEEccCCceeEeecc-------------------CCCceEEEEecCCCcEE-Eec
Confidence 3333322 3477788776554311111 11135688999999966 455
Q ss_pred EeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeC
Q 003886 463 IWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (789)
Q Consensus 463 ~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss 508 (789)
+.++...|| +..++++.+-..+.+.+...-|+.+|+.|....+.
T Consensus 471 s~dg~V~iw--s~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 471 SLDGCVHIW--STKTGKLVKSYQGTGGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred CCCCeeEec--cccchheeEeecCCCeEEEEEEcCCCCEEEEEecC
Confidence 666666666 55588888777776655667788888877666554
|
|
| >PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.9e-09 Score=132.30 Aligned_cols=107 Identities=20% Similarity=0.219 Sum_probs=77.6
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCC-C--CCCcccHHHHHHHHHHHHHcCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP-G--KVGSQDVNDVLTAIDHVIDMGL 667 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~-~--~~~~~~~~D~~~~i~~l~~~~~ 667 (789)
..|.||++||.+.+ ...|......|.. +|.|+++|+|| +|.+...... . ......++++.+.+..++++
T Consensus 1370 ~~~~vVllHG~~~s--~~~w~~~~~~L~~-~~rVi~~Dl~G---~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~-- 1441 (1655)
T PLN02980 1370 EGSVVLFLHGFLGT--GEDWIPIMKAISG-SARCISIDLPG---HGGSKIQNHAKETQTEPTLSVELVADLLYKLIEH-- 1441 (1655)
T ss_pred CCCeEEEECCCCCC--HHHHHHHHHHHhC-CCEEEEEcCCC---CCCCCCccccccccccccCCHHHHHHHHHHHHHH--
Confidence 46899999997765 4567777777754 59999999998 5554321110 0 11123466666666666655
Q ss_pred CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
++.+++.|+||||||.+++.++.++|++++++|+.++.
T Consensus 1442 l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~ 1479 (1655)
T PLN02980 1442 ITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISGS 1479 (1655)
T ss_pred hCCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCC
Confidence 35578999999999999999999999999999988764
|
|
| >COG0400 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.5e-09 Score=102.94 Aligned_cols=154 Identities=17% Similarity=0.143 Sum_probs=100.9
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc-------HHHHHHHHH
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD-------VNDVLTAID 660 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~-------~~D~~~~i~ 660 (789)
++...|+||++||.++ ....+......+ .-.+.++.+.-+-.-..+..+.. ....+..+ .+.+.+.++
T Consensus 14 ~~p~~~~iilLHG~Gg--de~~~~~~~~~~-~P~~~~is~rG~v~~~g~~~~f~--~~~~~~~d~edl~~~~~~~~~~l~ 88 (207)
T COG0400 14 GDPAAPLLILLHGLGG--DELDLVPLPELI-LPNATLVSPRGPVAENGGPRFFR--RYDEGSFDQEDLDLETEKLAEFLE 88 (207)
T ss_pred CCCCCcEEEEEecCCC--Chhhhhhhhhhc-CCCCeEEcCCCCccccCccccee--ecCCCccchhhHHHHHHHHHHHHH
Confidence 4556789999999653 344554433333 33366666664422111111111 11122222 234455566
Q ss_pred HHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCCh
Q 003886 661 HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSV 740 (789)
Q Consensus 661 ~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 740 (789)
.+.++..+|.+|+.++|+|.|+.+++.++.++|+.|+++|+.+|..-+..
T Consensus 89 ~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~------------------------------ 138 (207)
T COG0400 89 ELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEP------------------------------ 138 (207)
T ss_pred HHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCC------------------------------
Confidence 66666668999999999999999999999999999999999888652100
Q ss_pred hhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 741 EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 741 ~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
. ..-..-.+|+|++||+.|++||...+.++.+.|+.
T Consensus 139 ~-----------~~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~ 174 (207)
T COG0400 139 E-----------LLPDLAGTPILLSHGTEDPVVPLALAEALAEYLTA 174 (207)
T ss_pred c-----------cccccCCCeEEEeccCcCCccCHHHHHHHHHHHHH
Confidence 0 00112357999999999999999999999988764
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.9e-07 Score=98.21 Aligned_cols=127 Identities=14% Similarity=0.139 Sum_probs=74.3
Q ss_pred CcceecC-CCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCcccc
Q 003886 375 FFPRFSP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 453 (789)
Q Consensus 375 ~~p~~Sp-DG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~ 453 (789)
..|.|++ ||+ .+|.+... .++.+|+.+.+.... ....+...- ...++--|| +...+.+++
T Consensus 197 ~rP~~~~~dg~-~~~vs~eG-----------~V~~id~~~~~~~~~--~~~~~~~~~-~~~~~wrP~----g~q~ia~~~ 257 (352)
T TIGR02658 197 NHPAYSNKSGR-LVWPTYTG-----------KIFQIDLSSGDAKFL--PAIEAFTEA-EKADGWRPG----GWQQVAYHR 257 (352)
T ss_pred cCCceEcCCCc-EEEEecCC-----------eEEEEecCCCcceec--ceeeecccc-ccccccCCC----cceeEEEcC
Confidence 5678888 775 56777543 599999876554321 111111100 001112232 222378999
Q ss_pred CCCEEEEEEEe-------CCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCC-EEEEEEeCCCCCCeEEEEeeccc
Q 003886 454 DGCTMLLSSIW-------GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGD-NIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 454 Dg~~l~~~~~~-------~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~-~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
||+++|+.... .+...++.+|..+++...-...........+++|++ .|+.+.....+ +.++|..+.
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~---VsViD~~t~ 332 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKT---LYIFDAETG 332 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCc---EEEEECcCC
Confidence 99999886532 123589999999988766444333344568999999 44444434343 778886544
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-08 Score=112.49 Aligned_cols=252 Identities=14% Similarity=0.179 Sum_probs=158.2
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
.+....+||||+.++...... +..+|. .+.. .+.....+.+-. +..+.|||||+.|+-.+.+...+
T Consensus 161 sv~~~~fs~~g~~l~~~~~~~-----~i~~~~~~~~~~-~~~~~l~~h~~~------v~~~~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASSDG-----LIRIWKLEGIKS-NLLRELSGHTRG------VSDVAFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred ceEEEEEcCCCCeEEEccCCC-----cEEEeecccccc-hhhccccccccc------eeeeEECCCCcEEEEecCCceEE
Confidence 466788999999988875543 566662 2221 111111222222 27999999999998888877654
Q ss_pred CCCccC-CCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003886 233 KPTFSL-GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 233 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
.|.. ......+.++.+..++....|.++......+..+..|.+||+.+++..... ......+..+.|++||+.
T Consensus 229 --iwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l-~~hs~~is~~~f~~d~~~--- 302 (456)
T KOG0266|consen 229 --IWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL-KGHSDGISGLAFSPDGNL--- 302 (456)
T ss_pred --EeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee-eccCCceEEEEECCCCCE---
Confidence 3444 233455667788999988999999756667778899999999998876552 223336778899999997
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC---eeecCCCCC--ccCcceecCCCCEE
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESIS--SAFFPRFSPDGKFL 386 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~Lt~~~~--~~~~p~~SpDG~~l 386 (789)
|+-.+. +..|.++|+ .++. ...+..... ......|||+|++|
T Consensus 303 -l~s~s~---------------d~~i~vwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~l 349 (456)
T KOG0266|consen 303 -LVSASY---------------DGTIRVWDL-----------------ETGSKLCLKLLSGAENSAPVTSVQFSPNGKYL 349 (456)
T ss_pred -EEEcCC---------------CccEEEEEC-----------------CCCceeeeecccCCCCCCceeEEEECCCCcEE
Confidence 665541 236888887 5555 234443333 46889999999998
Q ss_pred EEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCC
Q 003886 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (789)
Q Consensus 387 a~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (789)
+-...+ ..+.+||+..+.......+... +.+ .+..+..+++|+.+ +++..++
T Consensus 350 l~~~~d-----------~~~~~w~l~~~~~~~~~~~~~~--------------~~~--~~~~~~~~~~~~~i-~sg~~d~ 401 (456)
T KOG0266|consen 350 LSASLD-----------RTLKLWDLRSGKSVGTYTGHSN--------------LVR--CIFSPTLSTGGKLI-YSGSEDG 401 (456)
T ss_pred EEecCC-----------CeEEEEEccCCcceeeecccCC--------------cce--eEecccccCCCCeE-EEEeCCc
Confidence 766644 3588888876544211111100 000 11233346788744 5554444
Q ss_pred eEEEEEEECCCCcEEEecCCC
Q 003886 467 SQVIISVNVSSGELLRITPAE 487 (789)
Q Consensus 467 ~~~l~~~dl~tg~~~~lt~~~ 487 (789)
.++.+|+.++...+....+
T Consensus 402 --~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 402 --SVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred --eEEEEeCCccchhhhhcCC
Confidence 4555677666554444333
|
|
| >KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.9e-09 Score=112.49 Aligned_cols=101 Identities=22% Similarity=0.365 Sum_probs=72.6
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHC-CcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~-Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (789)
+..|.||++||... ....|...+..|... |+.|+++|..| .|+ .+..+ .+. .....+....+..+....
T Consensus 56 ~~~~pvlllHGF~~--~~~~w~~~~~~L~~~~~~~v~aiDl~G-~g~-~s~~~--~~~--~y~~~~~v~~i~~~~~~~-- 125 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGA--SSFSWRRVVPLLSKAKGLRVLAIDLPG-HGY-SSPLP--RGP--LYTLRELVELIRRFVKEV-- 125 (326)
T ss_pred CCCCcEEEeccccC--CcccHhhhccccccccceEEEEEecCC-CCc-CCCCC--CCC--ceehhHHHHHHHHHHHhh--
Confidence 56788999999655 456777766666544 69999999987 333 22111 111 245666666666655542
Q ss_pred CCccEEEEEcCccHHHHHHHHHhCCCceeEEE
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA 700 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v 700 (789)
-.+++.++|||+||+++..+|+.+|+.++.+|
T Consensus 126 ~~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv 157 (326)
T KOG1454|consen 126 FVEPVSLVGHSLGGIVALKAAAYYPETVDSLV 157 (326)
T ss_pred cCcceEEEEeCcHHHHHHHHHHhCccccccee
Confidence 23559999999999999999999999999999
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.5e-08 Score=97.41 Aligned_cols=165 Identities=16% Similarity=0.249 Sum_probs=100.1
Q ss_pred cEEEEeCCCCCeEEEEecCC---C-----CCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEee
Q 003886 156 ASAVVPSPSGSKLLVVRNPE---N-----ESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~---~-----~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~ 227 (789)
.....|+|+|++|++....+ . +...++.+...+.....+.+.. .+.| ..++|||+|+++|.+..
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~--~~~I------~~~~WsP~g~~favi~g 79 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK--EGPI------HDVAWSPNGNEFAVIYG 79 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC--CCce------EEEEECcCCCEEEEEEc
Confidence 45678999999999977621 1 2234555653333344443322 1223 79999999999987743
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003886 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (789)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (789)
.. ...+.++|+++..+..+ .......+.|||+|+
T Consensus 80 ~~------------------------------------------~~~v~lyd~~~~~i~~~----~~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 80 SM------------------------------------------PAKVTLYDVKGKKIFSF----GTQPRNTISWSPDGR 113 (194)
T ss_pred cC------------------------------------------CcccEEEcCcccEeEee----cCCCceEEEECCCCC
Confidence 21 13566777764444444 123456789999999
Q ss_pred CCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEE
Q 003886 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 308 ~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la 387 (789)
. |+..+.. +....|..+|. ...+...... ........|||||++|+
T Consensus 114 ~----l~~~g~~------------n~~G~l~~wd~-----------------~~~~~i~~~~-~~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 114 F----LVLAGFG------------NLNGDLEFWDV-----------------RKKKKISTFE-HSDATDVEWSPDGRYLA 159 (194)
T ss_pred E----EEEEEcc------------CCCcEEEEEEC-----------------CCCEEeeccc-cCcEEEEEEcCCCCEEE
Confidence 8 8887632 12346888887 3222222222 23467889999999999
Q ss_pred EEecCCCCCCCCccccceeEEeecCC
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
..+.... +...+.+.+|+..+
T Consensus 160 ta~t~~r-----~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 160 TATTSPR-----LRVDNGFKIWSFQG 180 (194)
T ss_pred EEEeccc-----eeccccEEEEEecC
Confidence 8765321 11224567777655
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-06 Score=88.80 Aligned_cols=292 Identities=15% Similarity=0.118 Sum_probs=154.4
Q ss_pred eeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCC-CCCCeEEEEe-cCCceeEEEecCCCcccc
Q 003886 126 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGS 203 (789)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~-~~~~~~~~i~-~~~~~~~~~~~~~~~~g~ 203 (789)
.+.|+.+.+++..++...+. ...+.+...-.+|+|+++.|+.+...+ .+.-.-|.++ ++|++..+-+....-++.
T Consensus 15 s~gI~v~~ld~~~g~l~~~~---~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p 91 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ---LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP 91 (346)
T ss_pred CCceEEEEEeCcccccchhh---hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence 34566666654444321111 111225677889999999997766552 2444556666 457665554432211111
Q ss_pred ccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccC-
Q 003886 204 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS- 282 (789)
Q Consensus 204 v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~- 282 (789)
-.++.++||+.|+.+ .-.. ..|-|..+..
T Consensus 92 -------~yvsvd~~g~~vf~A-nY~~------------------------------------------g~v~v~p~~~d 121 (346)
T COG2706 92 -------CYVSVDEDGRFVFVA-NYHS------------------------------------------GSVSVYPLQAD 121 (346)
T ss_pred -------eEEEECCCCCEEEEE-EccC------------------------------------------ceEEEEEcccC
Confidence 358899999866544 3211 1222222211
Q ss_pred CceEec----c--C-----CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 283 GEVQAV----K--G-----IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 283 g~~~~l----~--~-----~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
|.+..+ . + -...-.+....++||++. |+.+. -.. ..|+.+++..+
T Consensus 122 G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~----l~v~D-LG~-------------Dri~~y~~~dg------ 177 (346)
T COG2706 122 GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRY----LVVPD-LGT-------------DRIFLYDLDDG------ 177 (346)
T ss_pred CccccceeeeecCCCCCCccccCCccceeeeCCCCCE----EEEee-cCC-------------ceEEEEEcccC------
Confidence 221111 0 0 001123557789999996 44443 211 25777777210
Q ss_pred hhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC--CCCCCcccceeeEEee
Q 003886 352 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT--NGNFSSLEKIVDVIPV 429 (789)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~--~~~~~~t~~~~~v~~~ 429 (789)
.........+ ..........|.|+||..+.+..-. +++-++..+. ++. ..+-.+
T Consensus 178 ------~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~----------stV~v~~y~~~~g~~-------~~lQ~i 233 (346)
T COG2706 178 ------KLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELN----------STVDVLEYNPAVGKF-------EELQTI 233 (346)
T ss_pred ------cccccccccc-CCCCCcceEEEcCCCcEEEEEeccC----------CEEEEEEEcCCCceE-------EEeeee
Confidence 0011112223 2334578999999999655544332 2344444433 222 122222
Q ss_pred eeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecC--CCCC-ceeEEeeecCCEEEEEE
Q 003886 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP--AESN-FSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~-~~~~~~s~dg~~l~~~~ 506 (789)
...|+ +|.|- .+...+..++||+.||.+-.......+|.+|..+|++..+.. ..+. .-...++++|+.|+++.
T Consensus 234 ~tlP~--dF~g~--~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 234 DTLPE--DFTGT--NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAAN 309 (346)
T ss_pred ccCcc--ccCCC--CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEc
Confidence 22232 34441 123456789999988876555567788999999998776533 2221 22346788888888777
Q ss_pred eCCCCCCeEEEEeeccc
Q 003886 507 SSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 507 ss~~~p~~i~~~~~~~~ 523 (789)
...+. -.+|.++..++
T Consensus 310 q~sd~-i~vf~~d~~TG 325 (346)
T COG2706 310 QKSDN-ITVFERDKETG 325 (346)
T ss_pred cCCCc-EEEEEEcCCCc
Confidence 66655 44566665443
|
|
| >PRK06765 homoserine O-acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=5e-09 Score=113.50 Aligned_cols=113 Identities=13% Similarity=0.163 Sum_probs=76.4
Q ss_pred CCCcEEEEEcCCCCCCCc----------hhhH-HHH---HHHHHCCcEEEEEcCCCCCC-----C---CchhhccCCC--
Q 003886 590 SCDPLIVVLHGGPHSVSL----------SSYS-KSL---AFLSSVGYSLLIVNYRGSLG-----F---GEEALQSLPG-- 645 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~----------~~~~-~~~---~~la~~Gy~V~~~d~rGs~G-----~---G~~~~~~~~~-- 645 (789)
.+.++||+.|+-.++... ..|. ..+ ..+-...|.||++|.-|++. + |....+...+
T Consensus 54 ~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~ 133 (389)
T PRK06765 54 AKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQVKDPNVITTGPASINPKTGKP 133 (389)
T ss_pred CCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCc
Confidence 467999999995543211 1222 221 23445569999999997532 1 2221111111
Q ss_pred ---CCCcccHHHHHHHHHHHHHcCCCCCccEE-EEEcCccHHHHHHHHHhCCCceeEEEEeCC
Q 003886 646 ---KVGSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNP 704 (789)
Q Consensus 646 ---~~~~~~~~D~~~~i~~l~~~~~~d~~rv~-l~G~S~GG~~a~~~~~~~p~~~~a~v~~~p 704 (789)
++....+.|+.+.+..+++. ...+++. |+||||||++++.++.++|++++.+|+.++
T Consensus 134 ~~~~fP~~t~~d~~~~~~~ll~~--lgi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ia~ 194 (389)
T PRK06765 134 YGMDFPVVTILDFVRVQKELIKS--LGIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGVIG 194 (389)
T ss_pred cCCCCCcCcHHHHHHHHHHHHHH--cCCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEec
Confidence 23345688988888888876 4556775 999999999999999999999999998865
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.1e-08 Score=107.76 Aligned_cols=203 Identities=17% Similarity=0.204 Sum_probs=133.6
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecC---CceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ---SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
..+...+|||||++|+-.+.+. .+.+|+- +...+.+. +....| ..+.|+|+|+.|+..+.+..
T Consensus 204 ~~v~~~~fs~d~~~l~s~s~D~-----tiriwd~~~~~~~~~~l~---gH~~~v------~~~~f~p~g~~i~Sgs~D~t 269 (456)
T KOG0266|consen 204 RGVSDVAFSPDGSYLLSGSDDK-----TLRIWDLKDDGRNLKTLK---GHSTYV------TSVAFSPDGNLLVSGSDDGT 269 (456)
T ss_pred cceeeeEECCCCcEEEEecCCc-----eEEEeeccCCCeEEEEec---CCCCce------EEEEecCCCCEEEEecCCCc
Confidence 4688999999999888766554 4566633 23333332 333333 79999999988888877776
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCce---EeccCCCCCC-ccceEEEeeCC
Q 003886 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---QAVKGIPKSL-SVGQVVWAPLN 306 (789)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~---~~l~~~~~~~-~~~~~~wSPDg 306 (789)
.+ .|+....+....++.+........|.+|.....++..+..|.+||+.++.. ..+.+ .... .+..+.|+|+|
T Consensus 270 vr--iWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~fsp~~ 346 (456)
T KOG0266|consen 270 VR--IWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSG-AENSAPVTSVQFSPNG 346 (456)
T ss_pred EE--EEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccC-CCCCCceeEEEECCCC
Confidence 54 455544555566666766666677888877777777789999999999983 23321 1111 46899999999
Q ss_pred CCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCC---ccCcceecCCC
Q 003886 307 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS---SAFFPRFSPDG 383 (789)
Q Consensus 307 ~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~---~~~~p~~SpDG 383 (789)
+. |+-... +..|..+|+. ........+.+.. ....+..+++|
T Consensus 347 ~~----ll~~~~---------------d~~~~~w~l~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 347 KY----LLSASL---------------DRTLKLWDLR----------------SGKSVGTYTGHSNLVRCIFSPTLSTGG 391 (456)
T ss_pred cE----EEEecC---------------CCeEEEEEcc----------------CCcceeeecccCCcceeEecccccCCC
Confidence 97 665541 2256666662 2223333333322 35567779999
Q ss_pred CEEEEEecCCCCCCCCccccceeEEeecCCCCCCCc
Q 003886 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 419 (789)
Q Consensus 384 ~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~ 419 (789)
+.|+-.+.+. .+++||..++...+.
T Consensus 392 ~~i~sg~~d~-----------~v~~~~~~s~~~~~~ 416 (456)
T KOG0266|consen 392 KLIYSGSEDG-----------SVYVWDSSSGGILQR 416 (456)
T ss_pred CeEEEEeCCc-----------eEEEEeCCccchhhh
Confidence 9887666543 599999988666543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.3e-08 Score=97.74 Aligned_cols=154 Identities=18% Similarity=0.317 Sum_probs=96.7
Q ss_pred ceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCC
Q 003886 212 GISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI 291 (789)
Q Consensus 212 ~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~ 291 (789)
.+.|+|+|+.|+.....+... . ++.+. +...||.++..+.....+. +
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~----------~--------------------~ks~~--~~~~l~~~~~~~~~~~~i~-l 56 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDK----------S--------------------GKSYY--GEFELFYLNEKNIPVESIE-L 56 (194)
T ss_pred EEEecccCCEEEEEEEEeecc----------C--------------------cceEE--eeEEEEEEecCCCccceee-c
Confidence 688999999999977632110 0 01111 3468999988777766663 3
Q ss_pred CCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCC
Q 003886 292 PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI 371 (789)
Q Consensus 292 ~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~ 371 (789)
.....+.+++|+|+|+. ++.+... .+..+..+|+ ++.....+. .
T Consensus 57 ~~~~~I~~~~WsP~g~~----favi~g~-------------~~~~v~lyd~-----------------~~~~i~~~~--~ 100 (194)
T PF08662_consen 57 KKEGPIHDVAWSPNGNE----FAVIYGS-------------MPAKVTLYDV-----------------KGKKIFSFG--T 100 (194)
T ss_pred cCCCceEEEEECcCCCE----EEEEEcc-------------CCcccEEEcC-----------------cccEeEeec--C
Confidence 33445899999999999 8776421 1225667776 433444443 2
Q ss_pred CccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCcc
Q 003886 372 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 451 (789)
Q Consensus 372 ~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~w 451 (789)
.......|||+|++|+...-.. ....|.+||....+........ ....+.|
T Consensus 101 ~~~n~i~wsP~G~~l~~~g~~n--------~~G~l~~wd~~~~~~i~~~~~~---------------------~~t~~~W 151 (194)
T PF08662_consen 101 QPRNTISWSPDGRFLVLAGFGN--------LNGDLEFWDVRKKKKISTFEHS---------------------DATDVEW 151 (194)
T ss_pred CCceEEEECCCCCEEEEEEccC--------CCcEEEEEECCCCEEeeccccC---------------------cEEEEEE
Confidence 3445689999999999876432 2246899998743332111000 1235689
Q ss_pred ccCCCEEEEEEE
Q 003886 452 LSDGCTMLLSSI 463 (789)
Q Consensus 452 s~Dg~~l~~~~~ 463 (789)
+|||++++..+.
T Consensus 152 sPdGr~~~ta~t 163 (194)
T PF08662_consen 152 SPDGRYLATATT 163 (194)
T ss_pred cCCCCEEEEEEe
Confidence 999998877654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.3e-08 Score=99.03 Aligned_cols=270 Identities=15% Similarity=0.164 Sum_probs=147.5
Q ss_pred ecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003886 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (789)
Q Consensus 102 ~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (789)
-.++|||+.+++... ...+.++++... .....+.... ..+....|+|+++.|++....+ .
T Consensus 15 ~~~~~~~~~l~~~~~---------~g~i~i~~~~~~-~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~~~-----~ 74 (289)
T cd00200 15 VAFSPDGKLLATGSG---------DGTIKVWDLETG-ELLRTLKGHT-----GPVRDVAASADGTYLASGSSDK-----T 74 (289)
T ss_pred EEEcCCCCEEEEeec---------CcEEEEEEeeCC-CcEEEEecCC-----cceeEEEECCCCCEEEEEcCCC-----e
Confidence 345688888876532 335566665332 1122222222 3356889999999988876543 3
Q ss_pred EEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCccee
Q 003886 182 FELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (789)
Q Consensus 182 ~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (789)
..+| ..++....+.... +. ...+.|+|+++.|+....+... ..|+............+........|
T Consensus 75 i~i~~~~~~~~~~~~~~~~---~~------i~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~i~~~~~ 143 (289)
T cd00200 75 IRLWDLETGECVRTLTGHT---SY------VSSVAFSPDGRILSSSSRDKTI--KVWDVETGKCLTTLRGHTDWVNSVAF 143 (289)
T ss_pred EEEEEcCcccceEEEeccC---Cc------EEEEEEcCCCCEEEEecCCCeE--EEEECCCcEEEEEeccCCCcEEEEEE
Confidence 4455 2222332222111 11 2789999997766555423221 12222211111111222333344556
Q ss_pred eCCcccccC-CccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceE
Q 003886 260 EEDWGETYA-GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (789)
Q Consensus 260 ~~d~g~~~~-~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~ 338 (789)
.++ +..+. +.....|.+||+.+++..... ......+..+.|+|+++. |++.+. ...|.
T Consensus 144 ~~~-~~~l~~~~~~~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----l~~~~~---------------~~~i~ 202 (289)
T cd00200 144 SPD-GTFVASSSQDGTIKLWDLRTGKCVATL-TGHTGEVNSVAFSPDGEK----LLSSSS---------------DGTIK 202 (289)
T ss_pred cCc-CCEEEEEcCCCcEEEEEccccccceeE-ecCccccceEEECCCcCE----EEEecC---------------CCcEE
Confidence 666 33333 333788999999877654431 222336778999999987 777762 23688
Q ss_pred EEecccccchhhhhhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCC
Q 003886 339 AVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (789)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~ 417 (789)
.+|+ ..+. ...+..+...+....|+||++.++..+.+ ..|++||+.++...
T Consensus 203 i~d~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------~~i~i~~~~~~~~~ 254 (289)
T cd00200 203 LWDL-----------------STGKCLGTLRGHENGVNSVAFSPDGYLLASGSED-----------GTIRVWDLRTGECV 254 (289)
T ss_pred EEEC-----------------CCCceecchhhcCCceEEEEEcCCCcEEEEEcCC-----------CcEEEEEcCCceeE
Confidence 8887 3333 33343455567889999997766544422 25899998764432
Q ss_pred CcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 418 SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 418 ~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
...... ...+..+.|+++++.| +++..++...+|
T Consensus 255 ~~~~~~-------------------~~~i~~~~~~~~~~~l-~~~~~d~~i~iw 288 (289)
T cd00200 255 QTLSGH-------------------TNSVTSLAWSPDGKRL-ASGSADGTIRIW 288 (289)
T ss_pred EEcccc-------------------CCcEEEEEECCCCCEE-EEecCCCeEEec
Confidence 111100 0124567899998755 455555555554
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-07 Score=101.03 Aligned_cols=229 Identities=17% Similarity=0.239 Sum_probs=144.6
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecC-CceeEEE--ecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQ-SQLEKEF--HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~-~~~~~~~--~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
.+...++||||+.||...+++ ...+|+. ...+-+| +...++ ..+.|+.+|+.|+..+-+
T Consensus 352 ~i~~l~YSpDgq~iaTG~eDg-----KVKvWn~~SgfC~vTFteHts~V----------t~v~f~~~g~~llssSLD--- 413 (893)
T KOG0291|consen 352 RITSLAYSPDGQLIATGAEDG-----KVKVWNTQSGFCFVTFTEHTSGV----------TAVQFTARGNVLLSSSLD--- 413 (893)
T ss_pred ceeeEEECCCCcEEEeccCCC-----cEEEEeccCceEEEEeccCCCce----------EEEEEEecCCEEEEeecC---
Confidence 577899999999999876654 4677843 2222222 333344 789999999988887655
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc-eEeccCCCCCCccceEEEeeCCCCCc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
..+..||+.... .+..+ .|.......++-.|.|.
T Consensus 414 -----------------------------------------GtVRAwDlkRYrNfRTft-~P~p~QfscvavD~sGe--- 448 (893)
T KOG0291|consen 414 -----------------------------------------GTVRAWDLKRYRNFRTFT-SPEPIQFSCVAVDPSGE--- 448 (893)
T ss_pred -----------------------------------------CeEEeeeecccceeeeec-CCCceeeeEEEEcCCCC---
Confidence 345667776554 33343 56666777777778787
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~ 389 (789)
|++.+.. ...+|+++++ .+|+ ...|..+.+.+...+|||+|..||..
T Consensus 449 --lV~AG~~-------------d~F~IfvWS~-----------------qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~ 496 (893)
T KOG0291|consen 449 --LVCAGAQ-------------DSFEIFVWSV-----------------QTGQLLDILSGHEGPVSGLSFSPDGSLLASG 496 (893)
T ss_pred --EEEeecc-------------ceEEEEEEEe-----------------ecCeeeehhcCCCCcceeeEEccccCeEEec
Confidence 7877732 2237999998 5555 56788889999999999999999887
Q ss_pred ecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEE
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (789)
|.+. .+.+||.-...... +.+.+. ..+..+.|+|||+.|.+.+. +|...
T Consensus 497 SWDk-----------TVRiW~if~s~~~v------Etl~i~-------------sdvl~vsfrPdG~elaVaTl-dgqIt 545 (893)
T KOG0291|consen 497 SWDK-----------TVRIWDIFSSSGTV------ETLEIR-------------SDVLAVSFRPDGKELAVATL-DGQIT 545 (893)
T ss_pred cccc-----------eEEEEEeeccCcee------eeEeec-------------cceeEEEEcCCCCeEEEEEe-cceEE
Confidence 7664 47777764432111 111110 12346789999999977653 44444
Q ss_pred EEEEE-------------CCCCcE--EEecCCCC----CceeEEeeecCCEEEEEEeCC
Q 003886 470 IISVN-------------VSSGEL--LRITPAES----NFSWSLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 470 l~~~d-------------l~tg~~--~~lt~~~~----~~~~~~~s~dg~~l~~~~ss~ 509 (789)
+|-.. +.+|+. -++|.... .+...-+|+||+.|+....+.
T Consensus 546 f~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn 604 (893)
T KOG0291|consen 546 FFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESN 604 (893)
T ss_pred EEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcc
Confidence 44322 222221 12333211 234456788999887665443
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.2e-07 Score=87.41 Aligned_cols=227 Identities=14% Similarity=0.192 Sum_probs=133.6
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
+-...|+|-..-++++...+ . -..+| ..++....+....+- -.+.|||||+++++...+
T Consensus 67 vdql~w~~~~~d~~atas~d-k---~ir~wd~r~~k~~~~i~~~~en----------i~i~wsp~g~~~~~~~kd----- 127 (313)
T KOG1407|consen 67 VDQLCWDPKHPDLFATASGD-K---TIRIWDIRSGKCTARIETKGEN----------INITWSPDGEYIAVGNKD----- 127 (313)
T ss_pred hhhheeCCCCCcceEEecCC-c---eEEEEEeccCcEEEEeeccCcc----------eEEEEcCCCCEEEEecCc-----
Confidence 55567888776666655443 1 34455 456666666654333 478999999999986433
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (789)
..|-.+|..+-++..- ..-...+....|.-++. +
T Consensus 128 ---------------------------------------D~it~id~r~~~~~~~--~~~~~e~ne~~w~~~nd-----~ 161 (313)
T KOG1407|consen 128 ---------------------------------------DRITFIDARTYKIVNE--EQFKFEVNEISWNNSND-----L 161 (313)
T ss_pred ---------------------------------------ccEEEEEecccceeeh--hcccceeeeeeecCCCC-----E
Confidence 4566677665554433 23334556788985554 7
Q ss_pred EEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 314 ~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
+|..+. ...+-++..+ .-..+..|..+...+.-..|+|||+++|..+.+.
T Consensus 162 Fflt~G--------------lG~v~ILsyp----------------sLkpv~si~AH~snCicI~f~p~GryfA~GsADA 211 (313)
T KOG1407|consen 162 FFLTNG--------------LGCVEILSYP----------------SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA 211 (313)
T ss_pred EEEecC--------------CceEEEEecc----------------ccccccccccCCcceEEEEECCCCceEeeccccc
Confidence 777632 2234444432 3344566777777888999999999999877553
Q ss_pred CCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 394 ~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
.+-+||++. ...+ . +|+. .+-.+..+.||.||+.| .+++.+--..|-
T Consensus 212 -----------lvSLWD~~E--LiC~-----R-----------~isR-ldwpVRTlSFS~dg~~l-ASaSEDh~IDIA-- 258 (313)
T KOG1407|consen 212 -----------LVSLWDVDE--LICE-----R-----------CISR-LDWPVRTLSFSHDGRML-ASASEDHFIDIA-- 258 (313)
T ss_pred -----------eeeccChhH--hhhh-----e-----------eecc-ccCceEEEEeccCccee-eccCccceEEeE--
Confidence 244555432 2110 0 0100 00124567899999855 455544444444
Q ss_pred ECCCCcE-EEecCCCCCceeEEeeecCCEEEEEEeCCCC
Q 003886 474 NVSSGEL-LRITPAESNFSWSLLTLDGDNIIAVSSSPVD 511 (789)
Q Consensus 474 dl~tg~~-~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~ 511 (789)
++.||.. ..|.-... ...++|.|....|+|.+++...
T Consensus 259 ~vetGd~~~eI~~~~~-t~tVAWHPk~~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 259 EVETGDRVWEIPCEGP-TFTVAWHPKRPLLAYACDDKDG 296 (313)
T ss_pred ecccCCeEEEeeccCC-ceeEEecCCCceeeEEecCCCC
Confidence 4446653 34433332 2345788887778888876554
|
|
| >PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-09 Score=125.11 Aligned_cols=132 Identities=22% Similarity=0.235 Sum_probs=86.7
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch--hhHHHHHHHHHCCcEEEEEcCC-CCCCCCchhhccCCCC
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYR-GSLGFGEEALQSLPGK 646 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~--~~~~~~~~la~~Gy~V~~~d~r-Gs~G~G~~~~~~~~~~ 646 (789)
+.|.+.| -++.|.......+.|++|+||||....... ........++..+++||.+||| |.-||-.......+
T Consensus 105 sEDCL~L--nI~~P~~~~~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~~~-- 180 (535)
T PF00135_consen 105 SEDCLYL--NIYTPSNASSNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLDAP-- 180 (535)
T ss_dssp ES---EE--EEEEETSSSSTTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTTSH--
T ss_pred CchHHHH--hhhhccccccccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccccccccccccccC--
Confidence 3455444 488888765555899999999988765444 2233445677899999999999 54444322111111
Q ss_pred CCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhC--CCceeEEEEeCCc
Q 003886 647 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPL 705 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~--p~~~~a~v~~~pv 705 (789)
.|..-+.|+..|++|+.++. .-|+++|.|+|+|.||..+..++... ..+|+.+|+.+|.
T Consensus 181 ~gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 181 SGNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp BSTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred chhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 13444889999999999862 25999999999999999998877652 3589999999984
|
Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A .... |
| >PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-09 Score=109.88 Aligned_cols=78 Identities=18% Similarity=0.354 Sum_probs=61.4
Q ss_pred cEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEE
Q 003886 622 YSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 701 (789)
Q Consensus 622 y~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~ 701 (789)
|.|+++|.||. |.+... ...........|+.+.++.+++. ...+++.++||||||.+++.++.++|++++++|+
T Consensus 1 f~vi~~d~rG~---g~S~~~-~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGF---GYSSPH-WDPDFPDYTTDDLAADLEALREA--LGIKKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTS---TTSSSC-CGSGSCTHCHHHHHHHHHHHHHH--HTTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCC---CCCCCC-ccCCcccccHHHHHHHHHHHHHH--hCCCCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 68999999983 333210 01223345588999999999987 3455699999999999999999999999999999
Q ss_pred eCCc
Q 003886 702 RNPL 705 (789)
Q Consensus 702 ~~pv 705 (789)
.++.
T Consensus 75 ~~~~ 78 (230)
T PF00561_consen 75 ISPP 78 (230)
T ss_dssp ESES
T ss_pred Eeee
Confidence 9985
|
; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A .... |
| >PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-07 Score=94.03 Aligned_cols=193 Identities=16% Similarity=0.177 Sum_probs=116.0
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHH
Q 003886 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (789)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~ 653 (789)
..+.+.+.-- ...+.+..+||-+||.|++ ...|......|.+.|++++.+||+| +|...... .... .-.
T Consensus 19 ~~~~a~y~D~--~~~gs~~gTVv~~hGsPGS--H~DFkYi~~~l~~~~iR~I~iN~PG---f~~t~~~~-~~~~---~n~ 87 (297)
T PF06342_consen 19 VTVQAVYEDS--LPSGSPLGTVVAFHGSPGS--HNDFKYIRPPLDEAGIRFIGINYPG---FGFTPGYP-DQQY---TNE 87 (297)
T ss_pred EEEEEEEEec--CCCCCCceeEEEecCCCCC--ccchhhhhhHHHHcCeEEEEeCCCC---CCCCCCCc-cccc---ChH
Confidence 4455544321 1134566799999999996 5677777889999999999999987 44432110 1111 234
Q ss_pred HHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc-h----hh---------hhc---C--
Q 003886 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN-L----AL---------MVG---T-- 714 (789)
Q Consensus 654 D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~-~----~~---------~~~---~-- 714 (789)
+-...++.++++-.++ +++.++|||.|+-.|+.++..+| ..++++.+|+-- . .. ++. .
T Consensus 88 er~~~~~~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~G~r~HkgIrp~~r~~~i~~l~~~lp~~~ 164 (297)
T PF06342_consen 88 ERQNFVNALLDELGIK-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPPGLRPHKGIRPLSRMETINYLYDLLPRFI 164 (297)
T ss_pred HHHHHHHHHHHHcCCC-CceEEEEeccchHHHHHHHhcCc--cceEEEecCCccccccCcCHHHHHHHHHHHHHHhhHHH
Confidence 5556666677764465 78999999999999999999885 568888877421 0 00 000 0
Q ss_pred CCCCcchhhhhccCccccccCCCCChhhHHHHH---hcC------ccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHC
Q 003886 715 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH---SKS------PISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHI 785 (789)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~s------p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l 785 (789)
.+...|.++..++. +.-.+ .+....++ ..+ -+..+.+-++|+|++.|.+|..|--+...++....
T Consensus 165 ~~~i~~~~y~~iG~---KV~~G---eeA~na~r~m~~~df~~q~~~I~~ln~~~ikvli~ygg~DhLIEeeI~~E~a~~f 238 (297)
T PF06342_consen 165 INAIMYFYYRMIGF---KVSDG---EEAINAMRSMQNCDFEEQKEYIDKLNKKPIKVLIAYGGKDHLIEEEISFEFAMKF 238 (297)
T ss_pred HHHHHHHHHHHhCe---eecCh---HHHHHHHHHHHhcCHHHHHHHHHHhccCCCcEEEEEcCcchhhHHHHHHHHHHHh
Confidence 00001222222221 10000 11111111 111 12334555689999999999999998888887665
Q ss_pred C
Q 003886 786 P 786 (789)
Q Consensus 786 ~ 786 (789)
+
T Consensus 239 ~ 239 (297)
T PF06342_consen 239 K 239 (297)
T ss_pred C
Confidence 4
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.3e-07 Score=102.25 Aligned_cols=200 Identities=13% Similarity=0.079 Sum_probs=115.3
Q ss_pred cceeecC-CCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc-----
Q 003886 211 EGISWNS-DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE----- 284 (789)
Q Consensus 211 ~~~~wSp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~----- 284 (789)
..+.|+| |++.||..+.+ ..|.+||+.++.
T Consensus 79 ~~v~fsP~d~~~LaSgS~D--------------------------------------------gtIkIWdi~~~~~~~~~ 114 (493)
T PTZ00421 79 IDVAFNPFDPQKLFTASED--------------------------------------------GTIMGWGIPEEGLTQNI 114 (493)
T ss_pred EEEEEcCCCCCEEEEEeCC--------------------------------------------CEEEEEecCCCcccccc
Confidence 7999999 88888876544 457777776542
Q ss_pred ---eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCC
Q 003886 285 ---VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 361 (789)
Q Consensus 285 ---~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 361 (789)
...+ ......+..+.|+|++.. +++++. .+..|.++|+ .+
T Consensus 115 ~~~l~~L--~gH~~~V~~l~f~P~~~~----iLaSgs--------------~DgtVrIWDl-----------------~t 157 (493)
T PTZ00421 115 SDPIVHL--QGHTKKVGIVSFHPSAMN----VLASAG--------------ADMVVNVWDV-----------------ER 157 (493)
T ss_pred CcceEEe--cCCCCcEEEEEeCcCCCC----EEEEEe--------------CCCEEEEEEC-----------------CC
Confidence 2223 122345778999999866 555542 1236888887 33
Q ss_pred CC-eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCcc
Q 003886 362 LP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 440 (789)
Q Consensus 362 ~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g 440 (789)
+. ...+..+...+...+|+|||+.|+..+.+. .|.+||+.++.... .+... . .
T Consensus 158 g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg-----------~IrIwD~rsg~~v~---------tl~~H-~-~---- 211 (493)
T PTZ00421 158 GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDK-----------KLNIIDPRDGTIVS---------SVEAH-A-S---- 211 (493)
T ss_pred CeEEEEEcCCCCceEEEEEECCCCEEEEecCCC-----------EEEEEECCCCcEEE---------EEecC-C-C----
Confidence 33 445665666788999999999887766443 58999987754311 00000 0 0
Q ss_pred ccccCCCCCccccCCCEEEEEEEe-CCeEEEEEEECCCCc-E-EEecCCC-CCceeEEeeecCCEEEEEEeCCCCCCeEE
Q 003886 441 LYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGE-L-LRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVK 516 (789)
Q Consensus 441 ~~~~~~~~~~ws~Dg~~l~~~~~~-~~~~~l~~~dl~tg~-~-~~lt~~~-~~~~~~~~s~dg~~l~~~~ss~~~p~~i~ 516 (789)
.......|.+++..|+..+.. .....|..+|+.+.+ . ....... .......++++++.++....+.. .|.
T Consensus 212 ---~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg---~Ir 285 (493)
T PTZ00421 212 ---AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG---NIR 285 (493)
T ss_pred ---CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC---eEE
Confidence 011245688888766544322 123345556665432 2 2221111 12233467788886665543333 266
Q ss_pred EEeeccc
Q 003886 517 YGYFVDK 523 (789)
Q Consensus 517 ~~~~~~~ 523 (789)
++++.++
T Consensus 286 iwdl~~~ 292 (493)
T PTZ00421 286 CFELMNE 292 (493)
T ss_pred EEEeeCC
Confidence 6666543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-06 Score=87.11 Aligned_cols=252 Identities=13% Similarity=0.095 Sum_probs=134.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecC-CCccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~-~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
+.+.+..||++|..|+..++.+ .+.++ ..|...+.+... -++ .-+.|-.....+.+.+....
T Consensus 15 ~~i~sl~fs~~G~~litss~dD-----sl~LYd~~~g~~~~ti~skkyG~----------~~~~Fth~~~~~i~sStk~d 79 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDD-----SLRLYDSLSGKQVKTINSKKYGV----------DLACFTHHSNTVIHSSTKED 79 (311)
T ss_pred CceeEEEecCCCCEEEEecCCC-----eEEEEEcCCCceeeEeecccccc----------cEEEEecCCceEEEccCCCC
Confidence 3477899999999999865554 23344 345555555442 233 34566666666666655332
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003886 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
....+.....++-..-++.+..-+....-.|-...-+++..+..|.+||+...+.+-+. . .....-.+|.|+|
T Consensus 80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l--~-~~~~pi~AfDp~G---- 152 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLL--N-LSGRPIAAFDPEG---- 152 (311)
T ss_pred CceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEE--e-cCCCcceeECCCC----
Confidence 22222222222222222333222222222332222234445678999999876655442 1 1122346888987
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeee--cC-CCCCccCcceecCCCCEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN--LT-ESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--Lt-~~~~~~~~p~~SpDG~~la 387 (789)
|+|+.-.+ ...|.++|+... +.+..+. ++ +.........||||||.|+
T Consensus 153 --LifA~~~~-------------~~~IkLyD~Rs~--------------dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iL 203 (311)
T KOG1446|consen 153 --LIFALANG-------------SELIKLYDLRSF--------------DKGPFTTFSITDNDEAEWTDLEFSPDGKSIL 203 (311)
T ss_pred --cEEEEecC-------------CCeEEEEEeccc--------------CCCCceeEccCCCCccceeeeEEcCCCCEEE
Confidence 55544211 115667776421 2333332 23 2234567889999999998
Q ss_pred EEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCe
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 467 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 467 (789)
...+.. .++++|.-+|..+.. . ...+....+| ....|+|||+.+ +.+..+|+
T Consensus 204 lsT~~s-----------~~~~lDAf~G~~~~t---f------s~~~~~~~~~-------~~a~ftPds~Fv-l~gs~dg~ 255 (311)
T KOG1446|consen 204 LSTNAS-----------FIYLLDAFDGTVKST---F------SGYPNAGNLP-------LSATFTPDSKFV-LSGSDDGT 255 (311)
T ss_pred EEeCCC-----------cEEEEEccCCcEeee---E------eeccCCCCcc-------eeEEECCCCcEE-EEecCCCc
Confidence 777543 588898777653211 0 0011111111 366899999854 66666666
Q ss_pred EEEEEEECCCCcEEEecCC
Q 003886 468 QVIISVNVSSGELLRITPA 486 (789)
Q Consensus 468 ~~l~~~dl~tg~~~~lt~~ 486 (789)
..+| ++++|+....+.+
T Consensus 256 i~vw--~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 256 IHVW--NLETGKKVAVLRG 272 (311)
T ss_pred EEEE--EcCCCcEeeEecC
Confidence 5555 5568876655544
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.5e-07 Score=105.09 Aligned_cols=178 Identities=12% Similarity=0.077 Sum_probs=110.3
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
..+..||||+++||+....... .....+||+++. +++.+.+
T Consensus 353 sspaiSpdG~~vA~v~~~~~~~------------------------------------~d~~s~Lwv~~~-gg~~~~l-- 393 (591)
T PRK13616 353 TSAALSRSGRQVAAVVTLGRGA------------------------------------PDPASSLWVGPL-GGVAVQV-- 393 (591)
T ss_pred ccceECCCCCEEEEEEeecCCC------------------------------------CCcceEEEEEeC-CCcceee--
Confidence 7899999999999987532100 013468999997 4455666
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC
Q 003886 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (789)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (789)
+.+. ....|.|||||+. |+|+.+... ..+.........||.+++ ++++.++ ..
T Consensus 394 t~g~-~~t~PsWspDG~~----lw~v~dg~~---~~~v~~~~~~gql~~~~v-----------------d~ge~~~--~~ 446 (591)
T PRK13616 394 LEGH-SLTRPSWSLDADA----VWVVVDGNT---VVRVIRDPATGQLARTPV-----------------DASAVAS--RV 446 (591)
T ss_pred ecCC-CCCCceECCCCCc----eEEEecCcc---eEEEeccCCCceEEEEec-----------------cCchhhh--cc
Confidence 3444 3789999999999 999874321 111111223457888887 5566554 33
Q ss_pred CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEE---eecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCC
Q 003886 371 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR---IDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 447 (789)
Q Consensus 371 ~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~---~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~ 447 (789)
.+.+..++|||||++|+|+... +|++ ..-..|. ..++.. ..+.. . ......
T Consensus 447 ~g~Issl~wSpDG~RiA~i~~g------------~v~Va~Vvr~~~G~-~~l~~~-~~l~~--------~----l~~~~~ 500 (591)
T PRK13616 447 PGPISELQLSRDGVRAAMIIGG------------KVYLAVVEQTEDGQ-YALTNP-REVGP--------G----LGDTAV 500 (591)
T ss_pred CCCcCeEEECCCCCEEEEEECC------------EEEEEEEEeCCCCc-eeeccc-EEeec--------c----cCCccc
Confidence 4568999999999999999821 4666 3333333 323211 11111 0 001124
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE
Q 003886 448 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 482 (789)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~ 482 (789)
.+.|..|++ |++. ...+...+|.+++++...+.
T Consensus 501 ~l~W~~~~~-L~V~-~~~~~~~v~~v~vDG~~~~~ 533 (591)
T PRK13616 501 SLDWRTGDS-LVVG-RSDPEHPVWYVNLDGSNSDA 533 (591)
T ss_pred cceEecCCE-EEEE-ecCCCCceEEEecCCccccc
Confidence 678999987 5544 33556678999997555443
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-06 Score=98.39 Aligned_cols=212 Identities=13% Similarity=0.095 Sum_probs=120.2
Q ss_pred cccEEEEeCC-CCCeEEEEecCCCCCCeEEEEec---CCce----eEEEecCCCccccccCCCcccceeecCCCC-EEEE
Q 003886 154 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWS---QSQL----EKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAY 224 (789)
Q Consensus 154 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~~---~~~~----~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~-~la~ 224 (789)
+.+...+||| |++.||..+.+. .+.+|+ .+.. ..+..+ .+....| ..+.|+|++. .|+.
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~Dg-----tIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V------~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDG-----TIMGWGIPEEGLTQNISDPIVHL-QGHTKKV------GIVSFHPSAMNVLAS 143 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCC-----EEEEEecCCCccccccCcceEEe-cCCCCcE------EEEEeCcCCCCEEEE
Confidence 4588999999 888888776543 455562 2111 111122 1222233 7899999875 4544
Q ss_pred EeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEee
Q 003886 225 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 304 (789)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP 304 (789)
.+. +..|.+||+.+++..... ......+..++|+|
T Consensus 144 gs~--------------------------------------------DgtVrIWDl~tg~~~~~l-~~h~~~V~sla~sp 178 (493)
T PTZ00421 144 AGA--------------------------------------------DMVVNVWDVERGKAVEVI-KCHSDQITSLEWNL 178 (493)
T ss_pred EeC--------------------------------------------CCEEEEEECCCCeEEEEE-cCCCCceEEEEEEC
Confidence 322 257899999988754431 12234578899999
Q ss_pred CCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCc-cCcceecCCC
Q 003886 305 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISS-AFFPRFSPDG 383 (789)
Q Consensus 305 Dg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~-~~~p~~SpDG 383 (789)
||+. |+..+ .+..|.++|+. .+.....+..+.+. .....|++++
T Consensus 179 dG~l----Latgs---------------~Dg~IrIwD~r----------------sg~~v~tl~~H~~~~~~~~~w~~~~ 223 (493)
T PTZ00421 179 DGSL----LCTTS---------------KDKKLNIIDPR----------------DGTIVSSVEAHASAKSQRCLWAKRK 223 (493)
T ss_pred CCCE----EEEec---------------CCCEEEEEECC----------------CCcEEEEEecCCCCcceEEEEcCCC
Confidence 9986 66555 23368888872 22233445444332 3457899998
Q ss_pred CEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEE
Q 003886 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 463 (789)
Q Consensus 384 ~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (789)
..|+...... ....+|.+||+...... +.. ..+ ... ..+..+.|++|++.|+..+.
T Consensus 224 ~~ivt~G~s~-------s~Dr~VklWDlr~~~~p-~~~-----~~~------d~~-----~~~~~~~~d~d~~~L~lggk 279 (493)
T PTZ00421 224 DLIITLGCSK-------SQQRQIMLWDTRKMASP-YST-----VDL------DQS-----SALFIPFFDEDTNLLYIGSK 279 (493)
T ss_pred CeEEEEecCC-------CCCCeEEEEeCCCCCCc-eeE-----ecc------CCC-----CceEEEEEcCCCCEEEEEEe
Confidence 8876554321 12346999998653321 110 000 000 01223468899997766544
Q ss_pred eCCeEEEEEEECCCCcEEEe
Q 003886 464 WGSSQVIISVNVSSGELLRI 483 (789)
Q Consensus 464 ~~~~~~l~~~dl~tg~~~~l 483 (789)
.++...+| |+.++++...
T Consensus 280 gDg~Iriw--dl~~~~~~~~ 297 (493)
T PTZ00421 280 GEGNIRCF--ELMNERLTFC 297 (493)
T ss_pred CCCeEEEE--EeeCCceEEE
Confidence 45555555 5556665443
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.6e-07 Score=99.11 Aligned_cols=198 Identities=14% Similarity=0.075 Sum_probs=137.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
+.+...+||||-++|+-.+++. -..+|. +.....+.. . +...+| ..+.|+|-|-+.|..+.+.+.+
T Consensus 452 GPVyg~sFsPd~rfLlScSED~-----svRLWsl~t~s~~V~y-~-GH~~PV------wdV~F~P~GyYFatas~D~tAr 518 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDS-----SVRLWSLDTWSCLVIY-K-GHLAPV------WDVQFAPRGYYFATASHDQTAR 518 (707)
T ss_pred CceeeeeecccccceeeccCCc-----ceeeeecccceeEEEe-c-CCCcce------eeEEecCCceEEEecCCCceee
Confidence 4588889999999998776643 345662 222222222 2 222233 6788999997777766665543
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (789)
.|..........+.++..-.+-..|.|+-.-..++..+..+.+||+.+|..+++. ......+..+++||+|++
T Consensus 519 --LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF-~GH~~~V~al~~Sp~Gr~---- 591 (707)
T KOG0263|consen 519 --LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF-TGHKGPVTALAFSPCGRY---- 591 (707)
T ss_pred --eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe-cCCCCceEEEEEcCCCce----
Confidence 5554444555555666666666778887666667777889999999999888873 223447889999999998
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
|+..+. ...|.++|+. .+..+.++-.+.+.+.+.+||.||..||..+.+
T Consensus 592 LaSg~e---------------d~~I~iWDl~----------------~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D 640 (707)
T KOG0263|consen 592 LASGDE---------------DGLIKIWDLA----------------NGSLVKQLKGHTGTIYSLSFSRDGNVLASGGAD 640 (707)
T ss_pred Eeeccc---------------CCcEEEEEcC----------------CCcchhhhhcccCceeEEEEecCCCEEEecCCC
Confidence 887652 2368888882 334556777778889999999999988766643
Q ss_pred CCCCCCCccccceeEEeecCC
Q 003886 393 SSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~ 413 (789)
+++.+||+..
T Consensus 641 -----------nsV~lWD~~~ 650 (707)
T KOG0263|consen 641 -----------NSVRLWDLTK 650 (707)
T ss_pred -----------CeEEEEEchh
Confidence 4688888754
|
|
| >KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-08 Score=94.70 Aligned_cols=168 Identities=13% Similarity=0.092 Sum_probs=117.5
Q ss_pred CCCcEEEEEcCCCCCCCchhh-HHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~-~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (789)
...|+.||+|||.+....... ......+..+||+|..++|--++ ....-.+.+.++...++|+++.- -
T Consensus 65 ~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~----------q~htL~qt~~~~~~gv~filk~~-~ 133 (270)
T KOG4627|consen 65 NQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCP----------QVHTLEQTMTQFTHGVNFILKYT-E 133 (270)
T ss_pred CCccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCc----------ccccHHHHHHHHHHHHHHHHHhc-c
Confidence 456999999998875433322 12345677899999999984321 12233556889999999998863 2
Q ss_pred CCccEEEEEcCccHHHHHHHHHh-CCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHH
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 747 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~-~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (789)
..+.+.+-|||.|+.+++.+.++ +..|+.++++.+|++++..+.......+.. ... + ...
T Consensus 134 n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~EL~~te~g~dlg---------------Lt~-~---~ae 194 (270)
T KOG4627|consen 134 NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRELSNTESGNDLG---------------LTE-R---NAE 194 (270)
T ss_pred cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHHHhCCccccccC---------------ccc-c---hhh
Confidence 45668888999999999988875 445899999999999987775443221111 000 1 112
Q ss_pred hcCcc-ccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 748 SKSPI-SHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 748 ~~sp~-~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
..|+. .....++.|+|++.++.|.---++|.+.+.+.+++
T Consensus 195 ~~Scdl~~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~ 235 (270)
T KOG4627|consen 195 SVSCDLWEYTDVTVWILVVAAEHESPKLIEQNRDFADQLRK 235 (270)
T ss_pred hcCccHHHhcCceeeeeEeeecccCcHHHHhhhhHHHHhhh
Confidence 23332 23677889999999999998888999999888654
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-07 Score=97.93 Aligned_cols=245 Identities=13% Similarity=0.154 Sum_probs=145.2
Q ss_pred CCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003886 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (789)
Q Consensus 105 spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (789)
.|+|+.++|+.. .+++++.+++.+. +..++. .+...+.........||||++||+....+ .|.++
T Consensus 266 ~p~G~~~i~~s~--------rrky~ysyDle~a--k~~k~~-~~~g~e~~~~e~FeVShd~~fia~~G~~G----~I~lL 330 (514)
T KOG2055|consen 266 APNGHSVIFTSG--------RRKYLYSYDLETA--KVTKLK-PPYGVEEKSMERFEVSHDSNFIAIAGNNG----HIHLL 330 (514)
T ss_pred cCCCceEEEecc--------cceEEEEeecccc--cccccc-CCCCcccchhheeEecCCCCeEEEcccCc----eEEee
Confidence 389997777643 4678999988443 222221 11111123456788999999999975543 45555
Q ss_pred e-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCc
Q 003886 185 W-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW 263 (789)
Q Consensus 185 ~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 263 (789)
- .+++...-+...+.+ .++.||.||+.|+.+..
T Consensus 331 hakT~eli~s~KieG~v----------~~~~fsSdsk~l~~~~~------------------------------------ 364 (514)
T KOG2055|consen 331 HAKTKELITSFKIEGVV----------SDFTFSSDSKELLASGG------------------------------------ 364 (514)
T ss_pred hhhhhhhhheeeeccEE----------eeEEEecCCcEEEEEcC------------------------------------
Confidence 5 455544444433333 89999999988776522
Q ss_pred ccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecc
Q 003886 264 GETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 343 (789)
Q Consensus 264 g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 343 (789)
..+||+||+....+...---.+.++..+.+.|++|.+ ++..+.+. + ..||..+-.
T Consensus 365 --------~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~y----lA~GS~~G------i-------VNIYd~~s~ 419 (514)
T KOG2055|consen 365 --------TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSY----LATGSDSG------I-------VNIYDGNSC 419 (514)
T ss_pred --------CceEEEEecCCcceEEEEeecCccceeeeeecCCCce----EEeccCcc------e-------EEEeccchh
Confidence 3589999998876554311234456678889999998 77766322 1 135543321
Q ss_pred cccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCC-Ccccc
Q 003886 344 LYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLEK 422 (789)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~-~~t~~ 422 (789)
.. ..+...+.++.+-...+.+.+|+||++.||..|... .+.|.+..+++-..- +....
T Consensus 420 ~~------------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~---------knalrLVHvPS~TVFsNfP~~ 478 (514)
T KOG2055|consen 420 FA------------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK---------KNALRLVHVPSCTVFSNFPTS 478 (514)
T ss_pred hc------------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc---------ccceEEEeccceeeeccCCCC
Confidence 00 001222333333344578999999999999888654 245666666552110 00000
Q ss_pred eeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003886 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (789)
Q Consensus 423 ~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~d 474 (789)
... ...+..+.|||.|.++. .++..|+..||.+.
T Consensus 479 n~~-----------------vg~vtc~aFSP~sG~lA-vGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 479 NTK-----------------VGHVTCMAFSPNSGYLA-VGNEAGRVHLFKLH 512 (514)
T ss_pred CCc-----------------ccceEEEEecCCCceEE-eecCCCceeeEeec
Confidence 000 01234678999998664 45677888888763
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-07 Score=107.98 Aligned_cols=153 Identities=19% Similarity=0.247 Sum_probs=92.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc--eeEEEecCCCccc---c----cc--CCCcccceeecCCCCEE
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ--LEKEFHVPQTVHG---S----VY--ADGWFEGISWNSDETLI 222 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~g---~----v~--~d~~~~~~~wSpDg~~l 222 (789)
+.+..+.|||||++||+.++.. +..+|.... ...++...++.+. + ++ -+..+.++.||||+..+
T Consensus 70 ~sv~CVR~S~dG~~lAsGSDD~-----~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~l 144 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSDDR-----LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLL 144 (942)
T ss_pred CceeEEEECCCCCeEeeccCcc-----eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEE
Confidence 4578899999999999987663 777772110 0000000000000 0 00 12234799999999999
Q ss_pred EEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEE
Q 003886 223 AYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVW 302 (789)
Q Consensus 223 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~w 302 (789)
|..+.+ +.|.+||..+.+...+. ......+..++|
T Consensus 145 vS~s~D--------------------------------------------nsViiwn~~tF~~~~vl-~~H~s~VKGvs~ 179 (942)
T KOG0973|consen 145 VSVSLD--------------------------------------------NSVIIWNAKTFELLKVL-RGHQSLVKGVSW 179 (942)
T ss_pred EEeccc--------------------------------------------ceEEEEccccceeeeee-ecccccccceEE
Confidence 887544 56888888777544431 223346789999
Q ss_pred eeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCC------CccCc
Q 003886 303 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI------SSAFF 376 (789)
Q Consensus 303 SPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~------~~~~~ 376 (789)
.|-|++ ++..+.+ |...+|+.. +-+-.+.+++.. .....
T Consensus 180 DP~Gky----~ASqsdD-------------rtikvwrt~------------------dw~i~k~It~pf~~~~~~T~f~R 224 (942)
T KOG0973|consen 180 DPIGKY----FASQSDD-------------RTLKVWRTS------------------DWGIEKSITKPFEESPLTTFFLR 224 (942)
T ss_pred CCccCe----eeeecCC-------------ceEEEEEcc------------------cceeeEeeccchhhCCCcceeee
Confidence 999998 7766632 222344432 334445555432 23678
Q ss_pred ceecCCCCEEEEEec
Q 003886 377 PRFSPDGKFLVFLSA 391 (789)
Q Consensus 377 p~~SpDG~~la~~s~ 391 (789)
+.|||||++|+..-.
T Consensus 225 lSWSPDG~~las~nA 239 (942)
T KOG0973|consen 225 LSWSPDGHHLASPNA 239 (942)
T ss_pred cccCCCcCeecchhh
Confidence 999999999976543
|
|
| >KOG3101 consensus Esterase D [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.5e-09 Score=96.19 Aligned_cols=181 Identities=17% Similarity=0.223 Sum_probs=111.1
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhH--HHHH-HHHHCCcEEEEEcC--CCCCCCCchhhccC-C--C-
Q 003886 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS--KSLA-FLSSVGYSLLIVNY--RGSLGFGEEALQSL-P--G- 645 (789)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~--~~~~-~la~~Gy~V~~~d~--rGs~G~G~~~~~~~-~--~- 645 (789)
.+.--+|+|+.+..+++.|++.++.|-... ...|. ..++ .....|++|+.||- ||..--|++..-.. . +
T Consensus 27 ~Mtf~vylPp~a~~~k~~P~lf~LSGLTCT--~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GAGF 104 (283)
T KOG3101|consen 27 SMTFGVYLPPDAPRGKRCPVLFYLSGLTCT--HENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGAGF 104 (283)
T ss_pred ceEEEEecCCCcccCCcCceEEEecCCccc--chhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCcee
Confidence 355557888888788889999999995443 33333 2334 45578999999995 45321121110000 0 0
Q ss_pred --CCCcccHHHHHHHHHHHHHc---------CCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcC
Q 003886 646 --KVGSQDVNDVLTAIDHVIDM---------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 714 (789)
Q Consensus 646 --~~~~~~~~D~~~~i~~l~~~---------~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~ 714 (789)
+-.......-.+..+|+.++ -.+|+.+++|+||||||+-|+-.+.+.|.+++.+.+.+|+++...-
T Consensus 105 YvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~~c--- 181 (283)
T KOG3101|consen 105 YVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPINC--- 181 (283)
T ss_pred EEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcccC---
Confidence 00011122223333333321 2379999999999999999999999999999999999999985332
Q ss_pred CCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCC---CCCEEEEEeCCCCCCC
Q 003886 715 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV---KTPTIFLLGAQDLRVP 774 (789)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i---~~P~Lii~G~~D~~vp 774 (789)
.|. .....-|.+ ++...|..+++...++++ ..-+||=+|+.|...+
T Consensus 182 ----pWG------qKAf~gYLG----~~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~ 230 (283)
T KOG3101|consen 182 ----PWG------QKAFTGYLG----DNKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLA 230 (283)
T ss_pred ----cch------HHHhhcccC----CChHHHhhcchHHHHHhcCCCCccEEEecCccchhhh
Confidence 122 111222333 344556666665544444 4558888999998765
|
|
| >PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-07 Score=90.54 Aligned_cols=154 Identities=17% Similarity=0.213 Sum_probs=91.9
Q ss_pred EEEEEcCCCCCCCchhhHHHHHHHHHCCc--EEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~Gy--~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
+|+++||...+..+.-.....+++++.|. .+..+|+.- ..++..+.++.++++ ..++
T Consensus 1 ~ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~-------------------~p~~a~~~l~~~i~~--~~~~ 59 (187)
T PF05728_consen 1 MILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLPP-------------------FPEEAIAQLEQLIEE--LKPE 59 (187)
T ss_pred CeEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCCc-------------------CHHHHHHHHHHHHHh--CCCC
Confidence 48999996665444444445667887764 455555431 134555666666665 3445
Q ss_pred cEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhh----cCCCCCcchhhhhccCccccccCCCCChhhHHHHH
Q 003886 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV----GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 747 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (789)
.++|+|.|+||+.|.+++.+++ +++ |++||...+...+ +......|. +.+.- ........+
T Consensus 60 ~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~iG~~~~~~~~----------e~~~~--~~~~~~~l~ 124 (187)
T PF05728_consen 60 NVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDYIGEQTNPYTG----------ESYEL--TEEHIEELK 124 (187)
T ss_pred CeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHhhCccccCCCC----------cccee--chHhhhhcc
Confidence 5999999999999999998874 555 8889887653332 111111110 00100 001111111
Q ss_pred hcCcccc-CCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 748 SKSPISH-ISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 748 ~~sp~~~-~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
.+.. ...-..++++++++.|+++++..+...|+..+
T Consensus 125 ---~l~~~~~~~~~~~lvll~~~DEvLd~~~a~~~~~~~~ 161 (187)
T PF05728_consen 125 ---ALEVPYPTNPERYLVLLQTGDEVLDYREAVAKYRGCA 161 (187)
T ss_pred ---eEeccccCCCccEEEEEecCCcccCHHHHHHHhcCce
Confidence 1111 12234689999999999999999988876543
|
One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised. |
| >PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-08 Score=104.34 Aligned_cols=135 Identities=16% Similarity=0.151 Sum_probs=86.1
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhH--HHHHHHHHCC----cEEEEEcCCCCCCCCchhh------
Q 003886 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS--KSLAFLSSVG----YSLLIVNYRGSLGFGEEAL------ 640 (789)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~--~~~~~la~~G----y~V~~~d~rGs~G~G~~~~------ 640 (789)
|.....++++|+++.+.+++|+|+++||. ..+...+. ..+..+++.| .++++++..+.......+.
T Consensus 5 g~~~~~~VylP~~y~~~~~~PvlylldG~--~~~~~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~ 82 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDPSKPYPVLYLLDGQ--SGWFRNGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPAGSS 82 (251)
T ss_dssp TEEEEEEEEECTTGGTTTTEEEEEEESHT--THHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSBCTT
T ss_pred CCeEEEEEEECCCCCCCCCCEEEEEccCC--ccccccchHHHHHHHHHHhCCCCceEEEEEecccccccccccccccccc
Confidence 45678889999998888999999999995 11111121 2233344443 5666666544221111111
Q ss_pred ccCCCCCCcccHHHHH--HHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchh
Q 003886 641 QSLPGKVGSQDVNDVL--TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709 (789)
Q Consensus 641 ~~~~~~~~~~~~~D~~--~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~ 709 (789)
.......+.....+.+ +.+.++.++-.++.++.+|+|+|+||+.|+.++.++|+.|.++++.+|..+..
T Consensus 83 ~~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~ 153 (251)
T PF00756_consen 83 RRADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPS 153 (251)
T ss_dssp CBCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETT
T ss_pred cccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCcccccc
Confidence 0111112222233322 45666666655666669999999999999999999999999999999987653
|
; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D .... |
| >KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.1e-08 Score=102.92 Aligned_cols=133 Identities=20% Similarity=0.256 Sum_probs=92.1
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhH-----H-HHHHHHHCCcEEEEEcCCCCCCCCchhh
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-----K-SLAFLSSVGYSLLIVNYRGSLGFGEEAL 640 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~-----~-~~~~la~~Gy~V~~~d~rGs~G~G~~~~ 640 (789)
..+..||. +-.+.-.|.. .+++|+|++.||--.+. ..|- . ..=.|+.+||.|..-|.|| ..|++.-.
T Consensus 52 ~V~T~DgY-iL~lhRIp~~---~~~rp~Vll~HGLl~sS--~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG-n~ySr~h~ 124 (403)
T KOG2624|consen 52 EVTTEDGY-ILTLHRIPRG---KKKRPVVLLQHGLLASS--SSWVLNGPEQSLAFLLADAGYDVWLGNNRG-NTYSRKHK 124 (403)
T ss_pred EEEccCCe-EEEEeeecCC---CCCCCcEEEeecccccc--ccceecCccccHHHHHHHcCCceeeecCcC-cccchhhc
Confidence 34455776 3333444652 28899999999954432 2221 1 2236889999999999999 55655432
Q ss_pred ccCCC--------CCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCC---ceeEEEEeCCccch
Q 003886 641 QSLPG--------KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLCNL 708 (789)
Q Consensus 641 ~~~~~--------~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~---~~~a~v~~~pv~~~ 708 (789)
...+. .|.+....|+-+.|+|+++. ...+++..+|||.|+.....++...|+ +++.+++.+|+.-+
T Consensus 125 ~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~--T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~~~ 201 (403)
T KOG2624|consen 125 KLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEK--TGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAAFP 201 (403)
T ss_pred ccCCcCCcceeecchhhhhhcCHHHHHHHHHHh--ccccceEEEEEEccchhheehhcccchhhhhhheeeeecchhhh
Confidence 22211 12233357899999999986 357899999999999999988887765 78899999997743
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.3e-07 Score=90.10 Aligned_cols=174 Identities=11% Similarity=0.134 Sum_probs=115.5
Q ss_pred CCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003886 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (789)
Q Consensus 105 spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (789)
|+||.+. ++ ....+.+.++++.+. ...++|..+. ..+...++|||.++|...+.+. .+.+
T Consensus 72 s~dg~~a-lS--------~swD~~lrlWDl~~g-~~t~~f~GH~-----~dVlsva~s~dn~qivSGSrDk-----Tikl 131 (315)
T KOG0279|consen 72 SSDGNFA-LS--------ASWDGTLRLWDLATG-ESTRRFVGHT-----KDVLSVAFSTDNRQIVSGSRDK-----TIKL 131 (315)
T ss_pred ccCCceE-Ee--------ccccceEEEEEecCC-cEEEEEEecC-----CceEEEEecCCCceeecCCCcc-----eeee
Confidence 5788644 33 234567888887443 3445665554 5689999999999998766554 5677
Q ss_pred ecCCceeEEEecCCCccccccCCCcccceeecCCC--CEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCC
Q 003886 185 WSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDE--TLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 262 (789)
Q Consensus 185 ~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg--~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 262 (789)
|+.-...+.+-......+ |...+.|||.. -.|+-.+.++..+ .|+...-+.......+..+.....++||
T Consensus 132 wnt~g~ck~t~~~~~~~~------WVscvrfsP~~~~p~Ivs~s~DktvK--vWnl~~~~l~~~~~gh~~~v~t~~vSpD 203 (315)
T KOG0279|consen 132 WNTLGVCKYTIHEDSHRE------WVSCVRFSPNESNPIIVSASWDKTVK--VWNLRNCQLRTTFIGHSGYVNTVTVSPD 203 (315)
T ss_pred eeecccEEEEEecCCCcC------cEEEEEEcCCCCCcEEEEccCCceEE--EEccCCcchhhccccccccEEEEEECCC
Confidence 743222333322222133 44999999984 5555555666543 5665444444555667777777889999
Q ss_pred cccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCC
Q 003886 263 WGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 263 ~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~ 308 (789)
+.-...+.+...+++||+..++--.- ......+.+.+|+|.--+
T Consensus 204 GslcasGgkdg~~~LwdL~~~k~lys--l~a~~~v~sl~fspnryw 247 (315)
T KOG0279|consen 204 GSLCASGGKDGEAMLWDLNEGKNLYS--LEAFDIVNSLCFSPNRYW 247 (315)
T ss_pred CCEEecCCCCceEEEEEccCCceeEe--ccCCCeEeeEEecCCcee
Confidence 87777888899999999998875333 345557789999997554
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.4e-07 Score=96.05 Aligned_cols=281 Identities=12% Similarity=0.019 Sum_probs=153.9
Q ss_pred EEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCC
Q 003886 99 WTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENES 178 (789)
Q Consensus 99 ~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~ 178 (789)
+.|-..|++|+++|-.... ....+|.+..+..-.-...+.... ..+....||||.++|+-....+
T Consensus 227 VWfl~FS~nGkyLAsaSkD-------~Taiiw~v~~d~~~kl~~tlvgh~-----~~V~yi~wSPDdryLlaCg~~e--- 291 (519)
T KOG0293|consen 227 VWFLQFSHNGKYLASASKD-------STAIIWIVVYDVHFKLKKTLVGHS-----QPVSYIMWSPDDRYLLACGFDE--- 291 (519)
T ss_pred EEEEEEcCCCeeEeeccCC-------ceEEEEEEecCcceeeeeeeeccc-----CceEEEEECCCCCeEEecCchH---
Confidence 3455679999999865322 344667665322200011222222 3588899999999998775544
Q ss_pred CeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCC-CC
Q 003886 179 PIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSW-KG 255 (789)
Q Consensus 179 ~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 255 (789)
...+| ..|+.+.... .+....+ .+..|-|||.+++..+.+..-- .|. ..+.....|.+...- ..
T Consensus 292 --~~~lwDv~tgd~~~~y~--~~~~~S~------~sc~W~pDg~~~V~Gs~dr~i~--~wd-lDgn~~~~W~gvr~~~v~ 358 (519)
T KOG0293|consen 292 --VLSLWDVDTGDLRHLYP--SGLGFSV------SSCAWCPDGFRFVTGSPDRTII--MWD-LDGNILGNWEGVRDPKVH 358 (519)
T ss_pred --heeeccCCcchhhhhcc--cCcCCCc------ceeEEccCCceeEecCCCCcEE--Eec-CCcchhhcccccccceeE
Confidence 35566 3454443332 2211122 6889999999988766554211 122 122222222222110 01
Q ss_pred cceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCc
Q 003886 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 335 (789)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~ 335 (789)
+.....|+...+.-..+..|.+++.++..-+.+ +..+..+.++..|-||+. +.+.- .+.
T Consensus 359 dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~l--ise~~~its~~iS~d~k~-----~LvnL--------------~~q 417 (519)
T KOG0293|consen 359 DLAITYDGKYVLLVTVDKKIRLYNREARVDRGL--ISEEQPITSFSISKDGKL-----ALVNL--------------QDQ 417 (519)
T ss_pred EEEEcCCCcEEEEEecccceeeechhhhhhhcc--ccccCceeEEEEcCCCcE-----EEEEc--------------ccC
Confidence 222344543444444567778888777655545 455667889999999995 43331 123
Q ss_pred ceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCC--ccCcceec-CCCCEEEEEecCCCCCCCCccccceeEEeecC
Q 003886 336 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS--SAFFPRFS-PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 412 (789)
Q Consensus 336 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~--~~~~p~~S-pDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~ 412 (789)
.|..+|+. +...+++-.++.- .+-.-.|- -|.+.++..|. ..++|+|+..
T Consensus 418 ei~LWDl~----------------e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE-----------D~kvyIWhr~ 470 (519)
T KOG0293|consen 418 EIHLWDLE----------------ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE-----------DSKVYIWHRI 470 (519)
T ss_pred eeEEeecc----------------hhhHHHHhhcccccceEEEeccCCCCcceEEecCC-----------CceEEEEEcc
Confidence 67788872 2222222222211 11111221 12233333332 2479999988
Q ss_pred CCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003886 413 TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (789)
Q Consensus 413 ~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~d 474 (789)
++.......+... .+.-++|.|...+++.++.++|+.+||...
T Consensus 471 sgkll~~LsGHs~-------------------~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 471 SGKLLAVLSGHSK-------------------TVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCceeEeecCCcc-------------------eeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 8776544333322 233567999888998998899999999654
|
|
| >KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.2e-08 Score=92.99 Aligned_cols=161 Identities=20% Similarity=0.303 Sum_probs=107.9
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCC-C---CCCCCc-hhhccCCCCCCcc
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR-G---SLGFGE-EALQSLPGKVGSQ 650 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~r-G---s~G~G~-~~~~~~~~~~~~~ 650 (789)
+.+++.-.. ..+ -+||.+.--.+- ..+.-+..+..++..||.|++||+- | +++.-. ....-+.+.-...
T Consensus 28 ldaYv~gs~----~~~-~~li~i~DvfG~-~~~n~r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~ 101 (242)
T KOG3043|consen 28 LDAYVVGST----SSK-KVLIVIQDVFGF-QFPNTREGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPK 101 (242)
T ss_pred eeEEEecCC----CCC-eEEEEEEeeecc-ccHHHHHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCCccc
Confidence 667676543 122 455555432111 1222334566788899999999985 4 222111 1101111222233
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCcc
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 730 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (789)
...|+.+.++|+..++ +..+||++|+++||-++..+....| .|.++++..|..-
T Consensus 102 ~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~vv~~~~~~~-~f~a~v~~hps~~----------------------- 155 (242)
T KOG3043|consen 102 IWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVVVTLSAKDP-EFDAGVSFHPSFV----------------------- 155 (242)
T ss_pred chhHHHHHHHHHHHcC--CcceeeEEEEeecceEEEEeeccch-hheeeeEecCCcC-----------------------
Confidence 4789999999999774 6789999999999999998888766 7899888776421
Q ss_pred ccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 731 KDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
. ...+.++++|+|++.|+.|..+|+....++-+.|+++
T Consensus 156 --------d------------~~D~~~vk~Pilfl~ae~D~~~p~~~v~~~ee~lk~~ 193 (242)
T KOG3043|consen 156 --------D------------SADIANVKAPILFLFAELDEDVPPKDVKAWEEKLKEN 193 (242)
T ss_pred --------C------------hhHHhcCCCCEEEEeecccccCCHHHHHHHHHHHhcC
Confidence 0 1235678899999999999999999999888888653
|
|
| >PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3 | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.4e-08 Score=94.29 Aligned_cols=118 Identities=25% Similarity=0.318 Sum_probs=91.6
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHH
Q 003886 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 654 (789)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D 654 (789)
+....++.|. ..+.||+|+|+||.. .....|....+.+++.||+|++++.-...+ --+..++++
T Consensus 32 PkpLlI~tP~---~~G~yPVilF~HG~~--l~ns~Ys~lL~HIASHGfIVVAPQl~~~~~-----------p~~~~Ei~~ 95 (307)
T PF07224_consen 32 PKPLLIVTPS---EAGTYPVILFLHGFN--LYNSFYSQLLAHIASHGFIVVAPQLYTLFP-----------PDGQDEIKS 95 (307)
T ss_pred CCCeEEecCC---cCCCccEEEEeechh--hhhHHHHHHHHHHhhcCeEEEechhhcccC-----------CCchHHHHH
Confidence 4566788887 788999999999943 345567778889999999999999853211 123456888
Q ss_pred HHHHHHHHHHc--C------CCCCccEEEEEcCccHHHHHHHHHhCC--CceeEEEEeCCccch
Q 003886 655 VLTAIDHVIDM--G------LANPSKVTVVGGSHGGFLTTHLIGQAP--DKFVAAAARNPLCNL 708 (789)
Q Consensus 655 ~~~~i~~l~~~--~------~~d~~rv~l~G~S~GG~~a~~~~~~~p--~~~~a~v~~~pv~~~ 708 (789)
..++++|+.+. . ..+.++++++|||.||-.|..+|..+. -.|.++|...||...
T Consensus 96 aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~ 159 (307)
T PF07224_consen 96 AASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGT 159 (307)
T ss_pred HHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCC
Confidence 99999998763 1 257799999999999999999988763 258899998888654
|
1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process |
| >PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.3e-08 Score=98.21 Aligned_cols=113 Identities=19% Similarity=0.310 Sum_probs=71.8
Q ss_pred CCcEEEEEcCCCCCCCchhh-HHHHHHHHHCCcEEEEEcCCCC-CCCCchhhccCCCCCCcccHHHHHHHHHHHHHc--C
Q 003886 591 CDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM--G 666 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~-~~~~~~la~~Gy~V~~~d~rGs-~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~--~ 666 (789)
+..+||||-|-..+.....| ....+.|...||.|+.+.++.| .|+|-... ..|++|+.++|+||+.. +
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL--------~~D~~eI~~~v~ylr~~~~g 103 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSL--------DRDVEEIAQLVEYLRSEKGG 103 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--H--------HHHHHHHHHHHHHHHHHS--
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchh--------hhHHHHHHHHHHHHHHhhcc
Confidence 56689999774443333333 4456677778999999999853 56765443 45799999999999987 2
Q ss_pred CCCCccEEEEEcCccHHHHHHHHHhCC-----CceeEEEEeCCccchhhh
Q 003886 667 LANPSKVTVVGGSHGGFLTTHLIGQAP-----DKFVAAAARNPLCNLALM 711 (789)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~~~~~p-----~~~~a~v~~~pv~~~~~~ 711 (789)
....++|+|||||-|..-+++++.+.. ..+.++|+.+||.|-..+
T Consensus 104 ~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~ 153 (303)
T PF08538_consen 104 HFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAI 153 (303)
T ss_dssp ----S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTST
T ss_pred ccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHh
Confidence 246789999999999999999988642 579999999999986544
|
This family contains many hypothetical proteins. ; PDB: 2Q0X_B. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.2e-07 Score=95.94 Aligned_cols=236 Identities=13% Similarity=0.071 Sum_probs=147.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
+++..+.|.|.-..|+...- + +.-++|.++ ......+-+++..-. +....|+|+|+..+|++.
T Consensus 214 ~~I~sv~FHp~~plllvaG~-d-~~lrifqvDGk~N~~lqS~~l~~fP---------i~~a~f~p~G~~~i~~s~----- 277 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGL-D-GTLRIFQVDGKVNPKLQSIHLEKFP---------IQKAEFAPNGHSVIFTSG----- 277 (514)
T ss_pred CCceEEEecCCCceEEEecC-C-CcEEEEEecCccChhheeeeeccCc---------cceeeecCCCceEEEecc-----
Confidence 56889999997665554432 2 455667666 334444444442211 267889999996666543
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCC--CCccceEEEeeCCCCCc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK--SLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~--~~~~~~~~wSPDg~~~~ 310 (789)
++.-+|.||+.+.++..+....+ .-....+..|||++.
T Consensus 278 --------------------------------------rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~f-- 317 (514)
T KOG2055|consen 278 --------------------------------------RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNF-- 317 (514)
T ss_pred --------------------------------------cceEEEEeeccccccccccCCCCcccchhheeEecCCCCe--
Confidence 23679999999999988842111 225678899999998
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEe
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s 390 (789)
|++.+ +..+|+++.. .+++...--.-.+.+....||.||+.|+.+.
T Consensus 318 --ia~~G---------------~~G~I~lLha-----------------kT~eli~s~KieG~v~~~~fsSdsk~l~~~~ 363 (514)
T KOG2055|consen 318 --IAIAG---------------NNGHIHLLHA-----------------KTKELITSFKIEGVVSDFTFSSDSKELLASG 363 (514)
T ss_pred --EEEcc---------------cCceEEeehh-----------------hhhhhhheeeeccEEeeEEEecCCcEEEEEc
Confidence 99988 3447888876 4444322223356788899999998876555
Q ss_pred cCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEE
Q 003886 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (789)
Q Consensus 391 ~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (789)
. ..++|+||+..... ...+.. +++.. -..++.|.+|+ ++.+++..|-.+|
T Consensus 364 ~-----------~GeV~v~nl~~~~~----------~~rf~D--~G~v~------gts~~~S~ng~-ylA~GS~~GiVNI 413 (514)
T KOG2055|consen 364 G-----------TGEVYVWNLRQNSC----------LHRFVD--DGSVH------GTSLCISLNGS-YLATGSDSGIVNI 413 (514)
T ss_pred C-----------CceEEEEecCCcce----------EEEEee--cCccc------eeeeeecCCCc-eEEeccCcceEEE
Confidence 2 23799999976421 111110 11111 13567788998 4466677788888
Q ss_pred EEEEC--CCCcEEEecCCCC---CceeEEeeecCCEEEEEEeCC
Q 003886 471 ISVNV--SSGELLRITPAES---NFSWSLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 471 ~~~dl--~tg~~~~lt~~~~---~~~~~~~s~dg~~l~~~~ss~ 509 (789)
|..+- .++..+++..-.. .++...|++|+..|+..+...
T Consensus 414 Yd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~ 457 (514)
T KOG2055|consen 414 YDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK 457 (514)
T ss_pred eccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc
Confidence 87542 3455555543322 345567888877555444333
|
|
| >PRK07868 acyl-CoA synthetase; Validated | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-07 Score=116.14 Aligned_cols=118 Identities=16% Similarity=0.260 Sum_probs=72.9
Q ss_pred EEEEEEecCCCCC--CCCCcEEEEEcCCCCCCCchhhHH-----HHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 576 FEAIFVSSSHKKD--CSCDPLIVVLHGGPHSVSLSSYSK-----SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 576 l~~~~~~P~~~~~--~~~~P~vv~~HGg~~~~~~~~~~~-----~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
+.-+.|.|...+. ....|.||++||.+... ..|.. ...+|+++||.|+++|+ |.++. . . ...
T Consensus 49 ~~l~~y~~~~~~~~~~~~~~plllvhg~~~~~--~~~d~~~~~s~v~~L~~~g~~v~~~d~-G~~~~--~---~--~~~- 117 (994)
T PRK07868 49 YRLRRYFPPDNRPGQPPVGPPVLMVHPMMMSA--DMWDVTRDDGAVGILHRAGLDPWVIDF-GSPDK--V---E--GGM- 117 (994)
T ss_pred EEEEEeCCCCccccccCCCCcEEEECCCCCCc--cceecCCcccHHHHHHHCCCEEEEEcC-CCCCh--h---H--cCc-
Confidence 4445566653211 23457899999976643 34433 26789999999999996 32221 1 0 001
Q ss_pred cccH----HHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHh-CCCceeEEEEeCCccc
Q 003886 649 SQDV----NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCN 707 (789)
Q Consensus 649 ~~~~----~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~-~p~~~~a~v~~~pv~~ 707 (789)
...+ ..+.++++.+.+.. .+++.++|||+||.+++.+++. .+++++.+|+.+...|
T Consensus 118 ~~~l~~~i~~l~~~l~~v~~~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d 178 (994)
T PRK07868 118 ERNLADHVVALSEAIDTVKDVT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVD 178 (994)
T ss_pred cCCHHHHHHHHHHHHHHHHHhh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccc
Confidence 1222 23344444444332 3579999999999999888764 4568999988666544
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.6e-08 Score=97.11 Aligned_cols=239 Identities=14% Similarity=0.172 Sum_probs=145.4
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
.+..+.|.|+|++|+..+..+ -|.+|.+... .++.-...|+ ..+..+.||++|.+++....+.- ..
T Consensus 98 ~V~~v~WtPeGRRLltgs~SG-----EFtLWNg~~f--nFEtilQaHD-----s~Vr~m~ws~~g~wmiSgD~gG~--iK 163 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSG-----EFTLWNGTSF--NFETILQAHD-----SPVRTMKWSHNGTWMISGDKGGM--IK 163 (464)
T ss_pred ceeeEEEcCCCceeEeecccc-----cEEEecCcee--eHHHHhhhhc-----ccceeEEEccCCCEEEEcCCCce--EE
Confidence 377889999999999877654 5888965211 1111112222 22389999999999876544332 23
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCce-EeccCCCCCCccceEEEeeCCCCCccEE
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~-~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (789)
+|.............+..-+....|++.-..-.+-..++.|.+||..-.+. +.| ......+..+.|.|.- . +
T Consensus 164 yWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL--~GHgwdVksvdWHP~k-g----L 236 (464)
T KOG0284|consen 164 YWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL--RGHGWDVKSVDWHPTK-G----L 236 (464)
T ss_pred ecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee--ccCCCCcceeccCCcc-c----e
Confidence 454322221111111222333445555433333444568899999766554 444 3445578899999964 4 6
Q ss_pred EEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 314 ~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
++++. ++.-+-.+|. .++. +..|..+...+....|+|+|.+|+..+.+
T Consensus 237 iasgs--------------kDnlVKlWDp-----------------rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD 285 (464)
T KOG0284|consen 237 IASGS--------------KDNLVKLWDP-----------------RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKD 285 (464)
T ss_pred eEEcc--------------CCceeEeecC-----------------CCcchhhhhhhccceEEEEEEcCCCCeeEEccCC
Confidence 66652 2225667786 4443 45666777789999999999999888755
Q ss_pred CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (789)
. .+.++|+.+-+......+..+ .+....|+|=...|+.++..++....|.
T Consensus 286 ~-----------~~kv~DiR~mkEl~~~r~Hkk-------------------dv~~~~WhP~~~~lftsgg~Dgsvvh~~ 335 (464)
T KOG0284|consen 286 Q-----------SCKVFDIRTMKELFTYRGHKK-------------------DVTSLTWHPLNESLFTSGGSDGSVVHWV 335 (464)
T ss_pred c-----------eEEEEehhHhHHHHHhhcchh-------------------hheeeccccccccceeeccCCCceEEEe
Confidence 3 478888764222221111111 1345679987777888777777777777
Q ss_pred EEC
Q 003886 473 VNV 475 (789)
Q Consensus 473 ~dl 475 (789)
+++
T Consensus 336 v~~ 338 (464)
T KOG0284|consen 336 VGL 338 (464)
T ss_pred ccc
Confidence 763
|
|
| >PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-08 Score=108.72 Aligned_cols=113 Identities=26% Similarity=0.344 Sum_probs=66.7
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCC-CCCC---C--Cch--hhc-----c-------CCCCCCc
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR-GSLG---F--GEE--ALQ-----S-------LPGKVGS 649 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~r-Gs~G---~--G~~--~~~-----~-------~~~~~~~ 649 (789)
.++|+|||-||-+++ ...|...+..||++||+|+++|+| ||.. + ... ... . .......
T Consensus 98 ~~~PvvIFSHGlgg~--R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGS--RTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPE 175 (379)
T ss_dssp S-EEEEEEE--TT----TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GG
T ss_pred CCCCEEEEeCCCCcc--hhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccch
Confidence 789999999996664 556788899999999999999999 5422 0 111 000 0 0000000
Q ss_pred -----------ccHHHHHHHHHHHHH--c------------------CCCCCccEEEEEcCccHHHHHHHHHhCCCceeE
Q 003886 650 -----------QDVNDVLTAIDHVID--M------------------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 698 (789)
Q Consensus 650 -----------~~~~D~~~~i~~l~~--~------------------~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a 698 (789)
.-..|+..+++.+.+ . +.+|.++|+++|||+||..++.++.+. .+|++
T Consensus 176 ~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d-~r~~~ 254 (379)
T PF03403_consen 176 EEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD-TRFKA 254 (379)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--TT--E
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-cCcce
Confidence 114567777777653 1 336789999999999999999988875 68999
Q ss_pred EEEeCCc
Q 003886 699 AAARNPL 705 (789)
Q Consensus 699 ~v~~~pv 705 (789)
+|+..|.
T Consensus 255 ~I~LD~W 261 (379)
T PF03403_consen 255 GILLDPW 261 (379)
T ss_dssp EEEES--
T ss_pred EEEeCCc
Confidence 9988774
|
|
| >COG4188 Predicted dienelactone hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.3e-08 Score=98.98 Aligned_cols=119 Identities=21% Similarity=0.280 Sum_probs=84.5
Q ss_pred CeeEEEEEEecCCCCC---CCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC---
Q 003886 573 QKPFEAIFVSSSHKKD---CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK--- 646 (789)
Q Consensus 573 g~~l~~~~~~P~~~~~---~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~--- 646 (789)
+.++.-.++.|..... ..+.|+|++-||.+.. ...|.+..+.|++.||+|..+++.|+.--+..........
T Consensus 49 ~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~Gs~--~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p 126 (365)
T COG4188 49 DRERPVDLRLPQGGTGTVALYLLPLVVLSHGSGSY--VTGFAWLAEHLASYGFVVAAPDHPGSNAGGAPAAYAGPGSYAP 126 (365)
T ss_pred CCccccceeccCCCccccccCcCCeEEecCCCCCC--ccchhhhHHHHhhCceEEEeccCCCcccccCChhhcCCcccch
Confidence 4456667777764321 2489999999995543 6677788899999999999999998532221111111111
Q ss_pred -CCcccHHHHHHHHHHHHHc---C----CCCCccEEEEEcCccHHHHHHHHHhCC
Q 003886 647 -VGSQDVNDVLTAIDHVIDM---G----LANPSKVTVVGGSHGGFLTTHLIGQAP 693 (789)
Q Consensus 647 -~~~~~~~D~~~~i~~l~~~---~----~~d~~rv~l~G~S~GG~~a~~~~~~~p 693 (789)
.......|+...+++|.+. + .+|..+|+++|||+||+.++.+++-+.
T Consensus 127 ~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~ 181 (365)
T COG4188 127 AEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAEL 181 (365)
T ss_pred hhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccc
Confidence 1112357888888888877 4 489999999999999999999887544
|
|
| >KOG2984 consensus Predicted hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.9e-09 Score=96.77 Aligned_cols=183 Identities=17% Similarity=0.222 Sum_probs=105.4
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHH-HHHCCcEEEEEcCCCCCCCCchhhccCCCCCCc-ccHHHHHHHHHHHHHcCCCC
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAF-LSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS-QDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~-la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~-~~~~D~~~~i~~l~~~~~~d 669 (789)
.-.|+++.|.-++ ....|.+.... +...-+.|++.|.+| ||.+-... .+.+. .-.+|...+++-+.. ++
T Consensus 42 ~~~iLlipGalGs-~~tDf~pql~~l~k~l~~TivawDPpG---YG~SrPP~--Rkf~~~ff~~Da~~avdLM~a---Lk 112 (277)
T KOG2984|consen 42 PNYILLIPGALGS-YKTDFPPQLLSLFKPLQVTIVAWDPPG---YGTSRPPE--RKFEVQFFMKDAEYAVDLMEA---LK 112 (277)
T ss_pred CceeEeccccccc-ccccCCHHHHhcCCCCceEEEEECCCC---CCCCCCCc--ccchHHHHHHhHHHHHHHHHH---hC
Confidence 3457777886655 34455554433 333449999999987 77654321 12221 114566666665544 36
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc---chhhh--hcCCCCCcchh------hhhccCccccccCCCC
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC---NLALM--VGTTDIPDWCY------VESYGSKGKDSFTESP 738 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~---~~~~~--~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 738 (789)
.+++.|+|||-||..|+.+|+++++.+..+|.+++.. +...| -+..+...|.- ...|+.........
T Consensus 113 ~~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~wa-- 190 (277)
T KOG2984|consen 113 LEPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFRTQWA-- 190 (277)
T ss_pred CCCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHHHHHH--
Confidence 7899999999999999999999999888887776532 22222 12233333331 11111100000000
Q ss_pred Ch-hhHHHHHhcC----ccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHC
Q 003886 739 SV-EDLTRFHSKS----PISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHI 785 (789)
Q Consensus 739 ~~-~~~~~~~~~s----p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l 785 (789)
.| +....+...- -...+.+++||+||+||++|+.|+-.++--+...+
T Consensus 191 ~wvD~v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~~~ 242 (277)
T KOG2984|consen 191 AWVDVVDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPVLK 242 (277)
T ss_pred HHHHHHHHHhhcCCCchHhhhcccccCCeeEeeCCcCCCCCCCCccchhhhc
Confidence 00 1111111110 11347899999999999999999887776554443
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.7e-06 Score=96.20 Aligned_cols=221 Identities=14% Similarity=0.163 Sum_probs=128.8
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
..+++||||++|||...... .....|+++|+++|+...-.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G---------------------------------------~e~~~l~v~Dl~tg~~l~d~- 166 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGG---------------------------------------SEWYTLRVFDLETGKFLPDG- 166 (414)
T ss_dssp EEEEETTTSSEEEEEEEETT---------------------------------------SSEEEEEEEETTTTEEEEEE-
T ss_pred eeeeECCCCCEEEEEecCCC---------------------------------------CceEEEEEEECCCCcCcCCc-
Confidence 46889999999999865431 12368999999999654320
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe--eecC
Q 003886 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLT 368 (789)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~Lt 368 (789)
+. ......+.|++||+. ++|+......+.. ..+.+..||+..+ .+... +.+.
T Consensus 167 i~-~~~~~~~~W~~d~~~----~~y~~~~~~~~~~----~~~~~~~v~~~~~-----------------gt~~~~d~lvf 220 (414)
T PF02897_consen 167 IE-NPKFSSVSWSDDGKG----FFYTRFDEDQRTS----DSGYPRQVYRHKL-----------------GTPQSEDELVF 220 (414)
T ss_dssp EE-EEESEEEEECTTSSE----EEEEECSTTTSS-----CCGCCEEEEEEET-----------------TS-GGG-EEEE
T ss_pred cc-ccccceEEEeCCCCE----EEEEEeCcccccc----cCCCCcEEEEEEC-----------------CCChHhCeeEE
Confidence 11 122234999999999 9999866543210 1123558999998 33322 2343
Q ss_pred CCCCc---cCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccC
Q 003886 369 ESISS---AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 445 (789)
Q Consensus 369 ~~~~~---~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~ 445 (789)
..... ......|+||++|+..+.... ..+.+|++|+..+... .. ....+.. .+++
T Consensus 221 e~~~~~~~~~~~~~s~d~~~l~i~~~~~~-------~~s~v~~~d~~~~~~~--~~---~~~~l~~-----~~~~----- 278 (414)
T PF02897_consen 221 EEPDEPFWFVSVSRSKDGRYLFISSSSGT-------SESEVYLLDLDDGGSP--DA---KPKLLSP-----REDG----- 278 (414)
T ss_dssp C-TTCTTSEEEEEE-TTSSEEEEEEESSS-------SEEEEEEEECCCTTTS--S----SEEEEEE-----SSSS-----
T ss_pred eecCCCcEEEEEEecCcccEEEEEEEccc-------cCCeEEEEeccccCCC--cC---CcEEEeC-----CCCc-----
Confidence 33222 346788999999887776642 1368999998875200 00 0111111 0111
Q ss_pred CCCCccccCCCEEEEEEEeC-CeEEEEEEECCCCc---EE-EecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEee
Q 003886 446 ILSNPWLSDGCTMLLSSIWG-SSQVIISVNVSSGE---LL-RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (789)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~~-~~~~l~~~dl~tg~---~~-~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~ 520 (789)
... .....|..+|+.++.+ ....|+.+++++.. .. .+.+.........++..+++|++....... ++|.++++
T Consensus 279 ~~~-~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~-~~l~v~~~ 356 (414)
T PF02897_consen 279 VEY-YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGS-SRLRVYDL 356 (414)
T ss_dssp -EE-EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTE-EEEEEEET
T ss_pred eEE-EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCc-cEEEEEEC
Confidence 000 1122366788777654 45789999998765 33 444444334555777888888877765553 46778877
Q ss_pred c
Q 003886 521 V 521 (789)
Q Consensus 521 ~ 521 (789)
.
T Consensus 357 ~ 357 (414)
T PF02897_consen 357 D 357 (414)
T ss_dssp T
T ss_pred C
Confidence 6
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK10439 enterobactin/ferric enterobactin esterase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.3e-08 Score=104.61 Aligned_cols=125 Identities=17% Similarity=0.197 Sum_probs=82.2
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCC----cEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G----y~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
|.....++|.|+++. .+++|+|+++||..+..... ....+..|.+.| .+|+.+|.........+. ..
T Consensus 191 g~~r~v~VY~P~~y~-~~~~PvlyllDG~~w~~~~~-~~~~ld~li~~g~i~P~ivV~id~~~~~~R~~el----~~--- 261 (411)
T PRK10439 191 GNSRRVWIYTTGDAA-PEERPLAILLDGQFWAESMP-VWPALDSLTHRGQLPPAVYLLIDAIDTTHRSQEL----PC--- 261 (411)
T ss_pred CCceEEEEEECCCCC-CCCCCEEEEEECHHhhhcCC-HHHHHHHHHHcCCCCceEEEEECCCCcccccccC----Cc---
Confidence 556778899998875 57899999999966532222 223445666777 457888863211111111 11
Q ss_pred cccH-HHHH-HHHHHHHHcC--CCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 649 SQDV-NDVL-TAIDHVIDMG--LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 649 ~~~~-~D~~-~~i~~l~~~~--~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
...+ ..+. +.+-++.++. ..|+++.+|+|+||||+.|+.++.++|++|.++++.+|.+
T Consensus 262 ~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ 323 (411)
T PRK10439 262 NADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSF 323 (411)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccce
Confidence 1111 1221 2334444431 2578899999999999999999999999999999999864
|
|
| >PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-08 Score=100.83 Aligned_cols=132 Identities=19% Similarity=0.205 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhh---cCC--CCCcchhhh-h
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV---GTT--DIPDWCYVE-S 725 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~---~~~--~~~~~~~~~-~ 725 (789)
++-+..+++||.+++.++.++|+|+|.|.||.+|+.+++.+| .++++|+.+|..-..... ... .++...+.. .
T Consensus 3 LEyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~ 81 (213)
T PF08840_consen 3 LEYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISK 81 (213)
T ss_dssp CHHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhh
Confidence 456789999999999999999999999999999999999998 799999999854321110 000 111111000 0
Q ss_pred c--cCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHH-HHHHHCC
Q 003886 726 Y--GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGL-QVIYHIP 786 (789)
Q Consensus 726 ~--~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~-~l~~~l~ 786 (789)
. ........ .........-......--+.++++|+|+++|++|.+.|-.... .+.+.|+
T Consensus 82 ~~~~~~~~~~~--~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~ 143 (213)
T PF08840_consen 82 FSWNEPGLLRS--RYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPSSEMAEQIEERLK 143 (213)
T ss_dssp -EE-TTS-EE---TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHH
T ss_pred ceecCCcceeh--hhhhhcccccccccccccHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHH
Confidence 0 00000000 0000000000001112236789999999999999999886555 4444454
|
Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B. |
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.6e-07 Score=103.99 Aligned_cols=215 Identities=14% Similarity=0.102 Sum_probs=113.8
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEec---CCceeEE-----EecCCCccccccCCCcccceeecCCCCEEEEEee
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWS---QSQLEKE-----FHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~---~~~~~~~-----~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~ 227 (789)
+.....+|||.++|......+++..+|.... ..+...+ ...-....|.| .++.|||||++||+.++
T Consensus 16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv------~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSV------NCVRFSPDGSYLASGSD 89 (942)
T ss_pred EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCce------eEEEECCCCCeEeeccC
Confidence 6688899999998875533333333333331 1111111 00011222333 79999999999999888
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003886 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (789)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (789)
+..... |..... +. ...|...+ +...+--|. .+..+ ...+..+.++.||||+.
T Consensus 90 D~~v~i--W~~~~~--~~----------~~~fgs~g-------~~~~vE~wk----~~~~l--~~H~~DV~Dv~Wsp~~~ 142 (942)
T KOG0973|consen 90 DRLVMI--WERAEI--GS----------GTVFGSTG-------GAKNVESWK----VVSIL--RGHDSDVLDVNWSPDDS 142 (942)
T ss_pred cceEEE--eeeccc--CC----------cccccccc-------cccccceee----EEEEE--ecCCCccceeccCCCcc
Confidence 753211 110000 00 00000000 001111111 11222 12344567899999999
Q ss_pred CCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEE
Q 003886 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 308 ~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la 387 (789)
. ++-++. +..|.+++.. .-...+.|..+.+.+-...|-|-||+||
T Consensus 143 ~----lvS~s~---------------DnsViiwn~~----------------tF~~~~vl~~H~s~VKGvs~DP~Gky~A 187 (942)
T KOG0973|consen 143 L----LVSVSL---------------DNSVIIWNAK----------------TFELLKVLRGHQSLVKGVSWDPIGKYFA 187 (942)
T ss_pred E----EEEecc---------------cceEEEEccc----------------cceeeeeeecccccccceEECCccCeee
Confidence 8 887773 2256677751 2244566777778889999999999998
Q ss_pred EEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEE
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 462 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~ 462 (789)
..+.+. .|.+|+... +.+...+..+.+++-. .....++.|||||++|....
T Consensus 188 SqsdDr-----------tikvwrt~d----------w~i~k~It~pf~~~~~---~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 188 SQSDDR-----------TLKVWRTSD----------WGIEKSITKPFEESPL---TTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred eecCCc-----------eEEEEEccc----------ceeeEeeccchhhCCC---cceeeecccCCCcCeecchh
Confidence 877654 466666322 1122222222221111 01245889999999876544
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=5e-06 Score=93.55 Aligned_cols=212 Identities=8% Similarity=0.071 Sum_probs=118.6
Q ss_pred cccEEEEeCCC-CCeEEEEecCCCCCCeEEEEec---CCceeE-----EEecCCCccccccCCCcccceeecCCCCEEEE
Q 003886 154 TGASAVVPSPS-GSKLLVVRNPENESPIQFELWS---QSQLEK-----EFHVPQTVHGSVYADGWFEGISWNSDETLIAY 224 (789)
Q Consensus 154 ~~~~~~~~SPd-G~~la~~~~~~~~~~~~~~i~~---~~~~~~-----~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~ 224 (789)
+.+...+|+|+ +..||..+... .+.+|+ .+.... +..+ .+..+.| ..+.|+|++..++.
T Consensus 75 ~~V~~lafsP~~~~lLASgS~Dg-----tIrIWDi~t~~~~~~~i~~p~~~L-~gH~~~V------~sVaf~P~g~~iLa 142 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDL-----TIRVWEIPHNDESVKEIKDPQCIL-KGHKKKI------SIIDWNPMNYYIMC 142 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCC-----eEEEEECCCCCccccccccceEEe-ecCCCcE------EEEEECCCCCeEEE
Confidence 45889999997 67777665443 455562 222111 1111 1122223 78999999987754
Q ss_pred EeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEee
Q 003886 225 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 304 (789)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP 304 (789)
++.. +..|.+||+.+++.... ......+..+.|+|
T Consensus 143 SgS~-------------------------------------------DgtIrIWDl~tg~~~~~--i~~~~~V~Slswsp 177 (568)
T PTZ00420 143 SSGF-------------------------------------------DSFVNIWDIENEKRAFQ--INMPKKLSSLKWNI 177 (568)
T ss_pred EEeC-------------------------------------------CCeEEEEECCCCcEEEE--EecCCcEEEEEECC
Confidence 4321 25788999988865432 22334578999999
Q ss_pred CCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCcc-----Ccce
Q 003886 305 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSA-----FFPR 378 (789)
Q Consensus 305 Dg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~-----~~p~ 378 (789)
||+. |+..+ ....|.++|+ .++. ...+..+.+.. ..-.
T Consensus 178 dG~l----Lat~s---------------~D~~IrIwD~-----------------Rsg~~i~tl~gH~g~~~s~~v~~~~ 221 (568)
T PTZ00420 178 KGNL----LSGTC---------------VGKHMHIIDP-----------------RKQEIASSFHIHDGGKNTKNIWIDG 221 (568)
T ss_pred CCCE----EEEEe---------------cCCEEEEEEC-----------------CCCcEEEEEecccCCceeEEEEeee
Confidence 9997 66554 1236888887 3333 34454443321 1124
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEE
Q 003886 379 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 458 (789)
Q Consensus 379 ~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l 458 (789)
||+|+++|+..+..+. ...+|.+||+..... .+.. ..+. ... +...+.|.++...+
T Consensus 222 fs~d~~~IlTtG~d~~-------~~R~VkLWDlr~~~~-pl~~-----~~ld------~~~-----~~L~p~~D~~tg~l 277 (568)
T PTZ00420 222 LGGDDNYILSTGFSKN-------NMREMKLWDLKNTTS-ALVT-----MSID------NAS-----APLIPHYDESTGLI 277 (568)
T ss_pred EcCCCCEEEEEEcCCC-------CccEEEEEECCCCCC-ceEE-----EEec------CCc-----cceEEeeeCCCCCE
Confidence 5799998887665431 224699999875222 1110 0000 000 11123455665557
Q ss_pred EEEEEeCCeEEEEEEECCCCcEEEec
Q 003886 459 LLSSIWGSSQVIISVNVSSGELLRIT 484 (789)
Q Consensus 459 ~~~~~~~~~~~l~~~dl~tg~~~~lt 484 (789)
|+++..++...+|-+ ..+.+..+.
T Consensus 278 ~lsGkGD~tIr~~e~--~~~~~~~l~ 301 (568)
T PTZ00420 278 YLIGKGDGNCRYYQH--SLGSIRKVN 301 (568)
T ss_pred EEEEECCCeEEEEEc--cCCcEEeec
Confidence 777666666666544 456665554
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2e-06 Score=83.31 Aligned_cols=270 Identities=16% Similarity=0.204 Sum_probs=148.8
Q ss_pred cccEEEEeCCC-CCeEEEEecCCCCCCeEEEEecCCc---eeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecC
Q 003886 154 TGASAVVPSPS-GSKLLVVRNPENESPIQFELWSQSQ---LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (789)
Q Consensus 154 ~~~~~~~~SPd-G~~la~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~ 229 (789)
+.+...+|+|- |..||..+... -.++|..+. ..-.+.+..+..-.| ..++|||.|+.||.++.+.
T Consensus 15 ~r~W~~awhp~~g~ilAscg~Dk-----~vriw~~~~~~s~~ck~vld~~hkrsV------RsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILASCGTDK-----AVRIWSTSSGDSWTCKTVLDDGHKRSV------RSVAWSPHGRYLASASFDA 83 (312)
T ss_pred CcEEEEEeccCCceEEEeecCCc-----eEEEEecCCCCcEEEEEeccccchhee------eeeeecCCCcEEEEeeccc
Confidence 45888999998 77666554432 567774331 222222333333334 7999999999999988776
Q ss_pred CCCCCCccCC--CCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc-eE---eccCCCCCCccceEEEe
Q 003886 230 SPSKPTFSLG--STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQ---AVKGIPKSLSVGQVVWA 303 (789)
Q Consensus 230 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~---~l~~~~~~~~~~~~~wS 303 (789)
+.. .|... .-+.....+.+..-.-...|++++.-+..-.++..+|+|.++.+. .. .| .+....+-.+.|.
T Consensus 84 t~~--Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL--~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 84 TVV--IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVL--QEHTQDVKHVIWH 159 (312)
T ss_pred eEE--EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeee--ccccccccEEEEc
Confidence 432 12211 111223333444444456788887666666788899999987553 22 23 2334467899999
Q ss_pred eCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCC-CCeeecCCCCCccCcceecCC
Q 003886 304 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESISSAFFPRFSPD 382 (789)
Q Consensus 304 PDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~Lt~~~~~~~~p~~SpD 382 (789)
|... |+|.+. |.....+|+-+.+ +. .-...|..+...+....|.|.
T Consensus 160 Pt~d-----lL~S~S------------YDnTIk~~~~~~d----------------ddW~c~~tl~g~~~TVW~~~F~~~ 206 (312)
T KOG0645|consen 160 PTED-----LLFSCS------------YDNTIKVYRDEDD----------------DDWECVQTLDGHENTVWSLAFDNI 206 (312)
T ss_pred CCcc-----eeEEec------------cCCeEEEEeecCC----------------CCeeEEEEecCccceEEEEEecCC
Confidence 9655 555541 2222234443321 11 124567777777889999999
Q ss_pred CCEEEEEecCCCCCC-----C-CccccceeEEeecCCCCCCCcccceeeEEeeeecc---CCCCC------ccccccCCC
Q 003886 383 GKFLVFLSAKSSVDS-----G-AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA---EGDCF------PGLYSSSIL 447 (789)
Q Consensus 383 G~~la~~s~~~~~~~-----g-~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~---~~~~f------~g~~~~~~~ 447 (789)
|.+|+..+++.++.- + ++.....||.+.|.+ +... +.+.++.+.+.... .+..+ .+.+...+.
T Consensus 207 G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~-~~Ia-S~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVN 284 (312)
T KOG0645|consen 207 GSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDN-GVIA-SGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVN 284 (312)
T ss_pred CceEEEecCCcceEeeeeccCcchhcccceEeeeecc-cceE-eccCCCEEEEEEecCCCCCchHHHHHhhhcccccccc
Confidence 999998887654210 0 000112344344431 1111 11111222222211 11111 112334567
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 448 SNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
.+.|.|.++.+++++.++|..++|.+
T Consensus 285 sV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 285 SVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred eEEEcCCCCCceeecCCCceEEEEEe
Confidence 78898876667777777787777764
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-07 Score=97.28 Aligned_cols=240 Identities=14% Similarity=0.099 Sum_probs=142.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEec-CCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
.++++..|.|---+|+- +..-++.-.+|.++.++...+.+.. ...+ ..++||++|+.++.++.+
T Consensus 215 kgvsai~~fp~~~hLlL-S~gmD~~vklW~vy~~~~~lrtf~gH~k~V----------rd~~~s~~g~~fLS~sfD---- 279 (503)
T KOG0282|consen 215 KGVSAIQWFPKKGHLLL-SGGMDGLVKLWNVYDDRRCLRTFKGHRKPV----------RDASFNNCGTSFLSASFD---- 279 (503)
T ss_pred cccchhhhccceeeEEE-ecCCCceEEEEEEecCcceehhhhcchhhh----------hhhhccccCCeeeeeecc----
Confidence 56888999994444432 3332344456666665544443322 2223 789999999999887665
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (789)
..|.+||+++|++..- ...+....-+.+.||+..
T Consensus 280 ----------------------------------------~~lKlwDtETG~~~~~--f~~~~~~~cvkf~pd~~n---- 313 (503)
T KOG0282|consen 280 ----------------------------------------RFLKLWDTETGQVLSR--FHLDKVPTCVKFHPDNQN---- 313 (503)
T ss_pred ----------------------------------------eeeeeeccccceEEEE--EecCCCceeeecCCCCCc----
Confidence 3577899999987655 344556678899999977
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe-eecCCCCCccCcceecCCCCEEEEEec
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
+++++.. +..|..+|+ .++++ +..-.+.+.+....|-++|++++..+.
T Consensus 314 ~fl~G~s--------------d~ki~~wDi-----------------Rs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 314 IFLVGGS--------------DKKIRQWDI-----------------RSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred EEEEecC--------------CCcEEEEec-----------------cchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 8888743 236889998 44443 333445677888999999999877775
Q ss_pred CCCCCCCCccccceeEEeecCCCCCCCcccce----------------------e------eEEeeeeccCCCCCccccc
Q 003886 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI----------------------V------DVIPVVQCAEGDCFPGLYS 443 (789)
Q Consensus 392 ~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~----------------------~------~v~~~~~~~~~~~f~g~~~ 443 (789)
+. .+.+|++...-........ + .+.+.........|.|.+.
T Consensus 363 dk-----------s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~v 431 (503)
T KOG0282|consen 363 DK-----------SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSV 431 (503)
T ss_pred Cc-----------cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceec
Confidence 54 3666666543322111000 0 0011111112234666655
Q ss_pred cCC-CCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC-CCceeEEeeecC
Q 003886 444 SSI-LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDG 499 (789)
Q Consensus 444 ~~~-~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg 499 (789)
.+. -.+.|||||++| ++++.+ ..++.+|..|-++......+ .......|.|.-
T Consensus 432 aGys~~v~fSpDG~~l-~SGdsd--G~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 432 AGYSCQVDFSPDGRTL-CSGDSD--GKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE 486 (503)
T ss_pred cCceeeEEEcCCCCeE-EeecCC--ccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence 444 367799999965 454444 45666666555443333332 333333455443
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.6e-07 Score=92.48 Aligned_cols=247 Identities=13% Similarity=0.170 Sum_probs=147.5
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
+....|||||++|+..+-++ ++++| ..|+.++-+... .......-|....++.||-|...||..+.
T Consensus 216 ~EcA~FSPDgqyLvsgSvDG-----FiEVWny~~GKlrKDLkYQ-Aqd~fMMmd~aVlci~FSRDsEMlAsGsq------ 283 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDG-----FIEVWNYTTGKLRKDLKYQ-AQDNFMMMDDAVLCISFSRDSEMLASGSQ------ 283 (508)
T ss_pred hhheeeCCCCceEeeccccc-----eeeeehhccchhhhhhhhh-hhcceeecccceEEEeecccHHHhhccCc------
Confidence 55678999999998766554 88999 467666544321 11111222334478899999988876433
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (789)
+..|.+|.+.+|...+-..-...-.+..+.||-|+.+ |
T Consensus 284 --------------------------------------DGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~Sq----i 321 (508)
T KOG0275|consen 284 --------------------------------------DGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQ----I 321 (508)
T ss_pred --------------------------------------CCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcch----h
Confidence 3568889999986533210123346788999999999 8
Q ss_pred EEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 314 ~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
+..+.+. .+.+--+ .+|+ .+....+...+....|++||..|+..+.+
T Consensus 322 LS~sfD~---------------tvRiHGl-----------------KSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 322 LSASFDQ---------------TVRIHGL-----------------KSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred hcccccc---------------eEEEecc-----------------ccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 8776432 2333333 3333 45566677788899999999999887765
Q ss_pred CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCC-CEEEEEEEeCCeEEEE
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG-CTMLLSSIWGSSQVII 471 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg-~~l~~~~~~~~~~~l~ 471 (789)
. .+.+|+..+.+-...-.... .+. .+..+...|.+ ..+++. .....+|
T Consensus 370 g-----------tvkvW~~KtteC~~Tfk~~~-----------~d~------~vnsv~~~PKnpeh~iVC---Nrsntv~ 418 (508)
T KOG0275|consen 370 G-----------TVKVWHGKTTECLSTFKPLG-----------TDY------PVNSVILLPKNPEHFIVC---NRSNTVY 418 (508)
T ss_pred c-----------cEEEecCcchhhhhhccCCC-----------Ccc------cceeEEEcCCCCceEEEE---cCCCeEE
Confidence 3 47888876654321100000 000 11111122221 233332 1234588
Q ss_pred EEECCCCcEEEecCC---CCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 472 SVNVSSGELLRITPA---ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 472 ~~dl~tg~~~~lt~~---~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
.+++.+.-++..+.+ .+++....+||.|.+++++..+. .+|.+...++
T Consensus 419 imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~----vlYCF~~~sG 469 (508)
T KOG0275|consen 419 IMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDG----VLYCFSVLSG 469 (508)
T ss_pred EEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCc----EEEEEEeecC
Confidence 888854444444443 23555567899999999888654 3666665444
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.8e-06 Score=91.65 Aligned_cols=262 Identities=14% Similarity=0.111 Sum_probs=129.0
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCC
Q 003886 157 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (789)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~ 235 (789)
....+||||++++... ++ + .+-.++ ...+..+.+...... .++++||||++|+.....
T Consensus 40 ~~~~~s~Dgr~~yv~~-rd-g--~vsviD~~~~~~v~~i~~G~~~----------~~i~~s~DG~~~~v~n~~------- 98 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVAN-RD-G--TVSVIDLATGKVVATIKVGGNP----------RGIAVSPDGKYVYVANYE------- 98 (369)
T ss_dssp EEEE-TT-SSEEEEEE-TT-S--EEEEEETTSSSEEEEEE-SSEE----------EEEEE--TTTEEEEEEEE-------
T ss_pred eEEEecCCCCEEEEEc-CC-C--eEEEEECCcccEEEEEecCCCc----------ceEEEcCCCCEEEEEecC-------
Confidence 4567999999976654 33 2 466677 566666666665444 689999999988665332
Q ss_pred ccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCC---C---CCccceEEEeeCCCCC
Q 003886 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP---K---SLSVGQVVWAPLNEGL 309 (789)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~---~---~~~~~~~~wSPDg~~~ 309 (789)
.+.+.++|.++.++.....+. . ...+..+.-||+...
T Consensus 99 ------------------------------------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~- 141 (369)
T PF02239_consen 99 ------------------------------------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE- 141 (369)
T ss_dssp ------------------------------------TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE-
T ss_pred ------------------------------------CCceeEeccccccceeecccccccccccCCCceeEEecCCCCE-
Confidence 267889999888765431011 1 112345566777775
Q ss_pred ccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe--eecCCCCCccCcceecCCCCEEE
Q 003886 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLTESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 310 ~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~Lt~~~~~~~~p~~SpDG~~la 387 (789)
.++.-.+ ..+||.+|.. +.... +.+. .......-.|+|||++++
T Consensus 142 ---fVv~lkd--------------~~~I~vVdy~----------------d~~~~~~~~i~-~g~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 142 ---FVVNLKD--------------TGEIWVVDYS----------------DPKNLKVTTIK-VGRFPHDGGFDPDGRYFL 187 (369)
T ss_dssp ---EEEEETT--------------TTEEEEEETT----------------TSSCEEEEEEE---TTEEEEEE-TTSSEEE
T ss_pred ---EEEEEcc--------------CCeEEEEEec----------------cccccceeeec-ccccccccccCcccceee
Confidence 5554422 2379999862 11111 2221 122344568999999876
Q ss_pred EEecCCCCCCCCccccceeEEeecCCCCCCCccc---ce----------------e-------eEEeeeeccCC-----C
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE---KI----------------V-------DVIPVVQCAEG-----D 436 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~---~~----------------~-------~v~~~~~~~~~-----~ 436 (789)
-..+.. +.|-++|..+++...+.. .. + ..++.+..... .
T Consensus 188 va~~~s----------n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~ 257 (369)
T PF02239_consen 188 VAANGS----------NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDY 257 (369)
T ss_dssp EEEGGG----------TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTT
T ss_pred eccccc----------ceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhh
Confidence 544332 245555554432211100 00 0 00011110000 0
Q ss_pred CCcc---ccc-cCCCCCccccCCCEEEEEEE-eCCeEEEEEEECCCCcEE-EecCCCC-CceeEEeeecCCEEEEEEeCC
Q 003886 437 CFPG---LYS-SSILSNPWLSDGCTMLLSSI-WGSSQVIISVNVSSGELL-RITPAES-NFSWSLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 437 ~f~g---~~~-~~~~~~~ws~Dg~~l~~~~~-~~~~~~l~~~dl~tg~~~-~lt~~~~-~~~~~~~s~dg~~l~~~~ss~ 509 (789)
.+.- +-. ....-+.-+||++++++... ......|..+|..+-++. .+....+ ......|++||++++++.-..
T Consensus 258 ~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 258 AWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp BTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--
T ss_pred cCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecC
Confidence 0000 000 01122345899999988622 233567999998887653 4443322 245678999999998877665
Q ss_pred CCCCeEEEEeecc
Q 003886 510 VDVPQVKYGYFVD 522 (789)
Q Consensus 510 ~~p~~i~~~~~~~ 522 (789)
.. .|.++|..+
T Consensus 338 ~~--~i~v~D~~T 348 (369)
T PF02239_consen 338 NG--AIVVYDAKT 348 (369)
T ss_dssp TT--EEEEEETTT
T ss_pred CC--EEEEEECCC
Confidence 54 688888543
|
... |
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.9e-06 Score=91.14 Aligned_cols=231 Identities=17% Similarity=0.149 Sum_probs=151.4
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
.+...+|+--|.+|||....- ..+.+|. ..+. -+... +++-..+ ..+..||||+.||..+++
T Consensus 309 ~I~t~~~N~tGDWiA~g~~kl----gQLlVweWqsEs-YVlKQ-QgH~~~i------~~l~YSpDgq~iaTG~eD----- 371 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCSKL----GQLLVWEWQSES-YVLKQ-QGHSDRI------TSLAYSPDGQLIATGAED----- 371 (893)
T ss_pred eeeEEEecccCCEEEEcCCcc----ceEEEEEeeccc-eeeec-cccccce------eeEEECCCCcEEEeccCC-----
Confidence 477889999999999965431 2456663 2221 11111 1111112 689999999999987665
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (789)
..|.+||..+|-..... +.....+..+.|+.+|+. |
T Consensus 372 ---------------------------------------gKVKvWn~~SgfC~vTF-teHts~Vt~v~f~~~g~~----l 407 (893)
T KOG0291|consen 372 ---------------------------------------GKVKVWNTQSGFCFVTF-TEHTSGVTAVQFTARGNV----L 407 (893)
T ss_pred ---------------------------------------CcEEEEeccCceEEEEe-ccCCCceEEEEEEecCCE----E
Confidence 34778898887544331 344557889999999996 6
Q ss_pred EEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCC-ccCcceecCCCCEEEEEecC
Q 003886 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS-SAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 314 ~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~-~~~~p~~SpDG~~la~~s~~ 392 (789)
+..+- +..+..+|+. .....+.+|.... .....+.-|.|. |++....
T Consensus 408 lssSL---------------DGtVRAwDlk----------------RYrNfRTft~P~p~QfscvavD~sGe-lV~AG~~ 455 (893)
T KOG0291|consen 408 LSSSL---------------DGTVRAWDLK----------------RYRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQ 455 (893)
T ss_pred EEeec---------------CCeEEeeeec----------------ccceeeeecCCCceeeeEEEEcCCCC-EEEeecc
Confidence 65553 2356666661 2334455554432 234455566687 5555544
Q ss_pred CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (789)
+ ...|++|++++|+...+..+... .+..++|+|+|. ++++++|+.+.++|.
T Consensus 456 d---------~F~IfvWS~qTGqllDiLsGHEg-------------------PVs~l~f~~~~~-~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 456 D---------SFEIFVWSVQTGQLLDILSGHEG-------------------PVSGLSFSPDGS-LLASGSWDKTVRIWD 506 (893)
T ss_pred c---------eEEEEEEEeecCeeeehhcCCCC-------------------cceeeEEccccC-eEEeccccceEEEEE
Confidence 3 36799999999988765554421 245678999998 668889999999998
Q ss_pred EECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeC
Q 003886 473 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (789)
Q Consensus 473 ~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss 508 (789)
+=-..|+.+.+.-... .....|+|||+.++....+
T Consensus 507 if~s~~~vEtl~i~sd-vl~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 507 IFSSSGTVETLEIRSD-VLAVSFRPDGKELAVATLD 541 (893)
T ss_pred eeccCceeeeEeeccc-eeEEEEcCCCCeEEEEEec
Confidence 7766677777754443 3456899999998766543
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.3e-06 Score=81.88 Aligned_cols=253 Identities=15% Similarity=0.115 Sum_probs=149.0
Q ss_pred eEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCC--CCCCcCCCCCCC
Q 003886 180 IQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKG--GSSDKDCNSWKG 255 (789)
Q Consensus 180 ~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 255 (789)
..+.+| ..|...+.++.+ |.+...+..+||++.||-+.... ...++....+. ......+..-+.
T Consensus 20 hTIRfWqa~tG~C~rTiqh~---------dsqVNrLeiTpdk~~LAaa~~qh---vRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 20 HTIRFWQALTGICSRTIQHP---------DSQVNRLEITPDKKDLAAAGNQH---VRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred ceeeeeehhcCeEEEEEecC---------ccceeeEEEcCCcchhhhccCCe---eEEEEccCCCCCceeEEeccCCceE
Confidence 457777 466666666543 22347899999999998765432 11222211111 111112212222
Q ss_pred cceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCc
Q 003886 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 335 (789)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~ 335 (789)
...|..|+.--|++..+..+.+||+..-..+++ ......+..+...|.-.. | +++. +..
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~--~~~~spVn~vvlhpnQte----L-is~d--------------qsg 146 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN--YQHNSPVNTVVLHPNQTE----L-ISGD--------------QSG 146 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchh--ccCCCCcceEEecCCcce----E-Eeec--------------CCC
Confidence 344666665567777889999999988666665 344567788999997665 4 4443 334
Q ss_pred ceEEEecccccchhhhhhhhcCCCCCCCeeecCC-CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 336 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 336 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
+|+++|+. +..-.++|.. ....+.+...-|||+.|+-..+++ .+|+|++-++
T Consensus 147 ~irvWDl~----------------~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG-----------~cyvW~l~~~ 199 (311)
T KOG0315|consen 147 NIRVWDLG----------------ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKG-----------NCYVWRLLNH 199 (311)
T ss_pred cEEEEEcc----------------CCccccccCCCCCcceeeEEEcCCCcEEEEecCCc-----------cEEEEEccCC
Confidence 79999982 2222334443 345688899999999998766553 5899998764
Q ss_pred CCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCC-cEEEecCCCC-Ccee
Q 003886 415 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG-ELLRITPAES-NFSW 492 (789)
Q Consensus 415 ~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg-~~~~lt~~~~-~~~~ 492 (789)
... ..+.++.+.+. ..+.+....+|||+++|+-. +.+....||..+ +- +.+..+..+. ....
T Consensus 200 ~~~------s~l~P~~k~~a-------h~~~il~C~lSPd~k~lat~-ssdktv~iwn~~--~~~kle~~l~gh~rWvWd 263 (311)
T KOG0315|consen 200 QTA------SELEPVHKFQA-------HNGHILRCLLSPDVKYLATC-SSDKTVKIWNTD--DFFKLELVLTGHQRWVWD 263 (311)
T ss_pred Ccc------ccceEhhheec-------ccceEEEEEECCCCcEEEee-cCCceEEEEecC--CceeeEEEeecCCceEEe
Confidence 332 12333332221 11234566799999977543 344455566554 43 4444444442 2333
Q ss_pred EEeeecCCEEEEEEeC
Q 003886 493 SLLTLDGDNIIAVSSS 508 (789)
Q Consensus 493 ~~~s~dg~~l~~~~ss 508 (789)
-.||.||.+|+...++
T Consensus 264 c~FS~dg~YlvTassd 279 (311)
T KOG0315|consen 264 CAFSADGEYLVTASSD 279 (311)
T ss_pred eeeccCccEEEecCCC
Confidence 5899999887655544
|
|
| >cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.2e-08 Score=100.92 Aligned_cols=112 Identities=16% Similarity=0.218 Sum_probs=77.1
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHH-HH-HHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKS-LA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~-~~-~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (789)
...|++|++||...+. ...|... .. ++...+|.|+++|+++... ....... ... ..-.+++.+.++++.++..
T Consensus 34 ~~~p~vilIHG~~~~~-~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~--~~y~~a~-~~~-~~v~~~la~~l~~L~~~~g 108 (275)
T cd00707 34 PSRPTRFIIHGWTSSG-EESWISDLRKAYLSRGDYNVIVVDWGRGAN--PNYPQAV-NNT-RVVGAELAKFLDFLVDNTG 108 (275)
T ss_pred CCCCcEEEEcCCCCCC-CCcHHHHHHHHHHhcCCCEEEEEECccccc--cChHHHH-HhH-HHHHHHHHHHHHHHHHhcC
Confidence 3568999999976643 2344333 33 4445689999999986311 1110000 000 1113567778888887644
Q ss_pred CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
++.++|.|+|||+||.++..++.+.|++++.+++..|..
T Consensus 109 ~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~ 147 (275)
T cd00707 109 LSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAG 147 (275)
T ss_pred CChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCc
Confidence 678899999999999999999999999999999998754
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=92.70 Aligned_cols=116 Identities=22% Similarity=0.356 Sum_probs=80.0
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHH-HCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHH
Q 003886 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (789)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la-~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~ 653 (789)
++..++-.|. .+..|++++.|||+.+ .-+|....+.+. ..-..++++|.|| +|++-.+.-..--.....+
T Consensus 61 t~n~Y~t~~~----~t~gpil~l~HG~G~S--~LSfA~~a~el~s~~~~r~~a~DlRg---HGeTk~~~e~dlS~eT~~K 131 (343)
T KOG2564|consen 61 TFNVYLTLPS----ATEGPILLLLHGGGSS--ALSFAIFASELKSKIRCRCLALDLRG---HGETKVENEDDLSLETMSK 131 (343)
T ss_pred eEEEEEecCC----CCCccEEEEeecCccc--chhHHHHHHHHHhhcceeEEEeeccc---cCccccCChhhcCHHHHHH
Confidence 6777777773 5678999999998875 567777777665 3457889999999 6655433211111222367
Q ss_pred HHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC--CCceeEEEEeC
Q 003886 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARN 703 (789)
Q Consensus 654 D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~--p~~~~a~v~~~ 703 (789)
|+.+.++++... ++.+|.|+||||||.++.+.+... |. +.+++.+.
T Consensus 132 D~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl~viD 179 (343)
T KOG2564|consen 132 DFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASKTLPS-LAGLVVID 179 (343)
T ss_pred HHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhhhchh-hhceEEEE
Confidence 888888887644 356799999999999998877642 43 44555443
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.9e-06 Score=86.57 Aligned_cols=215 Identities=17% Similarity=0.230 Sum_probs=118.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe---cCCceeEEEecCCCccccccCC---CcccceeecCCCCEEEEEee
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQTVHGSVYAD---GWFEGISWNSDETLIAYVAE 227 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~g~v~~d---~~~~~~~wSpDg~~la~~~~ 227 (789)
.++...+|-|-+...+.+.-+. =+.+| ......+....-...|+.|.-+ ..+..+.|.+||..++-++.
T Consensus 141 rnvtclawRPlsaselavgCr~-----gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~ 215 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRA-----GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASF 215 (445)
T ss_pred cceeEEEeccCCcceeeeeecc-----eeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeeccc
Confidence 4688899999887655444332 24555 2333333222212222222211 12378999999999887654
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCC-CCccceEEEeeCC
Q 003886 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLN 306 (789)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~-~~~~~~~~wSPDg 306 (789)
. ..+|.+||+++|...+| .+. ..++.-..|||||
T Consensus 216 g-------------------------------------------sssi~iWdpdtg~~~pL--~~~glgg~slLkwSPdg 250 (445)
T KOG2139|consen 216 G-------------------------------------------SSSIMIWDPDTGQKIPL--IPKGLGGFSLLKWSPDG 250 (445)
T ss_pred C-------------------------------------------cceEEEEcCCCCCcccc--cccCCCceeeEEEcCCC
Confidence 3 36899999999988888 333 3356688999999
Q ss_pred CCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEE
Q 003886 307 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFL 386 (789)
Q Consensus 307 ~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l 386 (789)
.. | |.+.-+. -..||...- .-+.+ +... +.+.+....|||+|++|
T Consensus 251 d~----l-faAt~da------------vfrlw~e~q----------------~wt~e-rw~l-gsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 251 DV----L-FAATCDA------------VFRLWQENQ----------------SWTKE-RWIL-GSGRVQTACWSPCGSFL 295 (445)
T ss_pred CE----E-EEecccc------------eeeeehhcc----------------cceec-ceec-cCCceeeeeecCCCCEE
Confidence 96 4 4441111 112332221 01222 2222 23478889999999999
Q ss_pred EEEecCCCCCCCCccccceeEEeecCCCCCCCc-ccceeeEEeeeeccCCC--CCccccccCCCCCccccCCCEEEEEEE
Q 003886 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS-LEKIVDVIPVVQCAEGD--CFPGLYSSSILSNPWLSDGCTMLLSSI 463 (789)
Q Consensus 387 a~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~-t~~~~~v~~~~~~~~~~--~f~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (789)
+|....+ ..||....++...... ..+...+..+.+.++-. ....+-+.....++|.|.|.+|.++-.
T Consensus 296 Lf~~sgs----------p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 296 LFACSGS----------PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred EEEEcCC----------ceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 9998654 3466665544322111 11222222222211100 001122344567889999988876543
|
|
| >COG4757 Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.8e-07 Score=87.50 Aligned_cols=209 Identities=16% Similarity=0.091 Sum_probs=112.9
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
...||..+.+..+... .+.+--+++-|+++. ....|..+.+.++.+||.|+.+||||.++.-........-.+.
T Consensus 11 ~~~DG~~l~~~~~pA~-----~~~~g~~~va~a~Gv-~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~~~~~~~ 84 (281)
T COG4757 11 PAPDGYSLPGQRFPAD-----GKASGRLVVAGATGV-GQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASLSGSQWRYL 84 (281)
T ss_pred ccCCCccCccccccCC-----CCCCCcEEecccCCc-chhHhHHHHHHhhccCceEEEEecccccCCCccccccCccchh
Confidence 4558888888777543 233323333454442 3445667788889999999999999954432222211112222
Q ss_pred cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCC-CC---Ccchhhh
Q 003886 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT-DI---PDWCYVE 724 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~-~~---~~~~~~~ 724 (789)
.....|+.++++++.+. ........+|||+||.+...+.. ++ ++.+.....-...+...++.. .. .-|+..-
T Consensus 85 DwA~~D~~aal~~~~~~--~~~~P~y~vgHS~GGqa~gL~~~-~~-k~~a~~vfG~gagwsg~m~~~~~l~~~~l~~lv~ 160 (281)
T COG4757 85 DWARLDFPAALAALKKA--LPGHPLYFVGHSFGGQALGLLGQ-HP-KYAAFAVFGSGAGWSGWMGLRERLGAVLLWNLVG 160 (281)
T ss_pred hhhhcchHHHHHHHHhh--CCCCceEEeeccccceeeccccc-Cc-ccceeeEeccccccccchhhhhcccceeeccccc
Confidence 33367899999998875 24567899999999988775544 55 343333222222222111110 00 0010000
Q ss_pred hc---cCccc-cccCCCC----C--------hhhHHHHHhcCcc-----ccCCCCCCCEEEEEeCCCCCCChHHHHHHHH
Q 003886 725 SY---GSKGK-DSFTESP----S--------VEDLTRFHSKSPI-----SHISKVKTPTIFLLGAQDLRVPVSNGLQVIY 783 (789)
Q Consensus 725 ~~---~~~~~-~~~~~~~----~--------~~~~~~~~~~sp~-----~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~ 783 (789)
.. -...+ ..+.+.. . |.....|...+|. ...+.+++|++.+...+|+.+|+.....|.+
T Consensus 161 p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi~~~~~~DD~w~P~As~d~f~~ 240 (281)
T COG4757 161 PPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPITFSRALDDPWAPPASRDAFAS 240 (281)
T ss_pred cchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCceeeeccCCCCcCCHHHHHHHHH
Confidence 00 00000 0001111 0 0011111122221 1246789999999999999999998888877
Q ss_pred HCCC
Q 003886 784 HIPF 787 (789)
Q Consensus 784 ~l~~ 787 (789)
..++
T Consensus 241 ~y~n 244 (281)
T COG4757 241 FYRN 244 (281)
T ss_pred hhhc
Confidence 6654
|
|
| >TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.1e-07 Score=100.19 Aligned_cols=121 Identities=15% Similarity=0.202 Sum_probs=76.9
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchh---hHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc-
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS---YSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 651 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~---~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~- 651 (789)
++-+.|.|.. +...+.|++ +++....-.+... -...+++|.++||.|+++|.+. ++ .+. ..++-.+
T Consensus 201 ~eLiqY~P~t-e~v~~~PLL-IVPp~INK~YIlDL~P~~SlVr~lv~qG~~VflIsW~n-P~--~~~-----r~~~ldDY 270 (560)
T TIGR01839 201 LELIQYKPIT-EQQHARPLL-VVPPQINKFYIFDLSPEKSFVQYCLKNQLQVFIISWRN-PD--KAH-----REWGLSTY 270 (560)
T ss_pred eEEEEeCCCC-CCcCCCcEE-EechhhhhhheeecCCcchHHHHHHHcCCeEEEEeCCC-CC--hhh-----cCCCHHHH
Confidence 4455666752 123344554 4555222111111 1236789999999999999986 22 211 1232222
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHH----HHHhCCC-ceeEEEEeCCccch
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH----LIGQAPD-KFVAAAARNPLCNL 708 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~----~~~~~p~-~~~a~v~~~pv~~~ 708 (789)
++.+.++++.+.+. ...++|.++|+|+||.+++. +++++++ +++.+++.+..+|+
T Consensus 271 v~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~sltllatplDf 330 (560)
T TIGR01839 271 VDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLTYLVSLLDS 330 (560)
T ss_pred HHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEEeeeccccc
Confidence 34666777777665 45688999999999999986 6777775 89999988776665
|
This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. |
| >TIGR03230 lipo_lipase lipoprotein lipase | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.8e-07 Score=101.19 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=76.2
Q ss_pred CCcEEEEEcCCCCCCCchhhHH-HHHHHHH--CCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSK-SLAFLSS--VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~-~~~~la~--~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (789)
..|++|++||...+.....|.. ....|.. ..|.|+++|++| +|.+...... .....-.+++.+.+++|.+...
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g---~g~s~y~~a~-~~t~~vg~~la~lI~~L~~~~g 115 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLS---RAQQHYPTSA-AYTKLVGKDVAKFVNWMQEEFN 115 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCC---cCCCCCcccc-ccHHHHHHHHHHHHHHHHHhhC
Confidence 4689999999765432234544 3334432 369999999987 3332211100 1111113566777888776533
Q ss_pred CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
++.+++.|+|||+||.++..++.+.|+++..+++..|..
T Consensus 116 l~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAg 154 (442)
T TIGR03230 116 YPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAG 154 (442)
T ss_pred CCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCC
Confidence 678999999999999999999998899999999998853
|
Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity. |
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.3e-06 Score=91.79 Aligned_cols=156 Identities=13% Similarity=0.075 Sum_probs=94.7
Q ss_pred eCCCCCeEEEEecCC-CCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCC-CCEEEEEeecCCCCCCCccC
Q 003886 161 PSPSGSKLLVVRNPE-NESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIAYVAEEPSPSKPTFSL 238 (789)
Q Consensus 161 ~SPdG~~la~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpD-g~~la~~~~~~~~~~~~~~~ 238 (789)
.+.+++++|+.-... ++...++.+|..++...+..+. +..+.| ..++|+|+ +..||..+.+
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~-gH~~~V------~~lafsP~~~~lLASgS~D---------- 96 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLK-GHTSSI------LDLQFNPCFSEILASGSED---------- 96 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEc-CCCCCE------EEEEEcCCCCCEEEEEeCC----------
Confidence 455567777765443 2334567777544433333332 223344 79999997 6777765443
Q ss_pred CCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCce---------EeccCCCCCCccceEEEeeCCCCC
Q 003886 239 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---------QAVKGIPKSLSVGQVVWAPLNEGL 309 (789)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~---------~~l~~~~~~~~~~~~~wSPDg~~~ 309 (789)
..|.+||+.++.. ..+ ......+..++|+|++..
T Consensus 97 ----------------------------------gtIrIWDi~t~~~~~~~i~~p~~~L--~gH~~~V~sVaf~P~g~~- 139 (568)
T PTZ00420 97 ----------------------------------LTIRVWEIPHNDESVKEIKDPQCIL--KGHKKKISIIDWNPMNYY- 139 (568)
T ss_pred ----------------------------------CeEEEEECCCCCccccccccceEEe--ecCCCcEEEEEECCCCCe-
Confidence 4577788764321 112 112335778999999987
Q ss_pred ccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEE
Q 003886 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVF 388 (789)
Q Consensus 310 ~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~ 388 (789)
++.++. .+..|.++|+ .+++ ...+. ....+...+|+|||+.|+.
T Consensus 140 ---iLaSgS--------------~DgtIrIWDl-----------------~tg~~~~~i~-~~~~V~SlswspdG~lLat 184 (568)
T PTZ00420 140 ---IMCSSG--------------FDSFVNIWDI-----------------ENEKRAFQIN-MPKKLSSLKWNIKGNLLSG 184 (568)
T ss_pred ---EEEEEe--------------CCCeEEEEEC-----------------CCCcEEEEEe-cCCcEEEEEECCCCCEEEE
Confidence 765542 1236778887 3333 33333 3345788999999998876
Q ss_pred EecCCCCCCCCccccceeEEeecCCCCC
Q 003886 389 LSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 389 ~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
.+.+ ..|.+||+.++..
T Consensus 185 ~s~D-----------~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 185 TCVG-----------KHMHIIDPRKQEI 201 (568)
T ss_pred EecC-----------CEEEEEECCCCcE
Confidence 5533 2599999887543
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.8e-06 Score=88.28 Aligned_cols=233 Identities=13% Similarity=0.090 Sum_probs=136.4
Q ss_pred EEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCC
Q 003886 100 TFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESP 179 (789)
Q Consensus 100 ~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~ 179 (789)
..-.|+.||..+|+-. ..+++.+++. ++.....|.... +.+.+..|+-+|.+|+-..-.+
T Consensus 239 T~L~Wn~~G~~LatG~---------~~G~~riw~~--~G~l~~tl~~Hk-----gPI~slKWnk~G~yilS~~vD~---- 298 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGS---------EDGEARIWNK--DGNLISTLGQHK-----GPIFSLKWNKKGTYILSGGVDG---- 298 (524)
T ss_pred ceEEecCCCCeEEEee---------cCcEEEEEec--CchhhhhhhccC-----CceEEEEEcCCCCEEEeccCCc----
Confidence 3445778888777643 4456666654 444443343333 5588999999999998754332
Q ss_pred eEEEEec--CCceeEEEecCCCc-----------------cccc---------------cCCCcccceeecCCCCEEEEE
Q 003886 180 IQFELWS--QSQLEKEFHVPQTV-----------------HGSV---------------YADGWFEGISWNSDETLIAYV 225 (789)
Q Consensus 180 ~~~~i~~--~~~~~~~~~~~~~~-----------------~g~v---------------~~d~~~~~~~wSpDg~~la~~ 225 (789)
...+|+ .|+..+.+.+.... .+.+ --++.+..+.|.|-|+.|+..
T Consensus 299 -ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~ 377 (524)
T KOG0273|consen 299 -TTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASC 377 (524)
T ss_pred -cEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEe
Confidence 333442 23333332221000 0000 012233788999999999988
Q ss_pred eecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccc---------cCCccCceEEEEEccCCceEeccCCCCCCc
Q 003886 226 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET---------YAGKRQPSLFVININSGEVQAVKGIPKSLS 296 (789)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~---------~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~ 296 (789)
+.+.+.+ .|.............+..-++...|+|+..-. +....+..+.+||+..|...... +.....
T Consensus 378 SdD~Tlk--iWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f-~kH~~p 454 (524)
T KOG0273|consen 378 SDDGTLK--IWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL-MKHQEP 454 (524)
T ss_pred cCCCeeE--eeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee-ccCCCc
Confidence 8776543 34432222222222333233333455543211 12223577889999998766542 345567
Q ss_pred cceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCc
Q 003886 297 VGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFF 376 (789)
Q Consensus 297 ~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~ 376 (789)
+..++|||||++ +++.+ +...|..++. .+++..+-..+.+.++.
T Consensus 455 VysvafS~~g~y----lAsGs---------------~dg~V~iws~-----------------~~~~l~~s~~~~~~Ife 498 (524)
T KOG0273|consen 455 VYSVAFSPNGRY----LASGS---------------LDGCVHIWST-----------------KTGKLVKSYQGTGGIFE 498 (524)
T ss_pred eEEEEecCCCcE----EEecC---------------CCCeeEeccc-----------------cchheeEeecCCCeEEE
Confidence 889999999998 88776 2335666666 45555544455566899
Q ss_pred ceecCCCCEEEEEecC
Q 003886 377 PRFSPDGKFLVFLSAK 392 (789)
Q Consensus 377 p~~SpDG~~la~~s~~ 392 (789)
..|+-+|.+|.-...+
T Consensus 499 l~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 499 LCWNAAGDKLGACASD 514 (524)
T ss_pred EEEcCCCCEEEEEecC
Confidence 9999999988765544
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.5e-06 Score=89.37 Aligned_cols=271 Identities=13% Similarity=0.071 Sum_probs=146.3
Q ss_pred cccceeEEEEEEeecCCCCc---cceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcee-EEEecC
Q 003886 122 ANKRKKFMLSTVISKENENS---VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLE-KEFHVP 197 (789)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~---~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~-~~~~~~ 197 (789)
++.....+..|+..+=.... ++| .|.+...+...+|||.|..|+.++.. .|..+++.+|-.. ......
T Consensus 184 sGs~Dy~v~~wDf~gMdas~~~fr~l----~P~E~h~i~sl~ys~Tg~~iLvvsg~----aqakl~DRdG~~~~e~~KGD 255 (641)
T KOG0772|consen 184 SGSLDYTVKFWDFQGMDASMRSFRQL----QPCETHQINSLQYSVTGDQILVVSGS----AQAKLLDRDGFEIVEFSKGD 255 (641)
T ss_pred eccccceEEEEecccccccchhhhcc----CcccccccceeeecCCCCeEEEEecC----cceeEEccCCceeeeeeccc
Confidence 44566677788774432222 222 24444568889999999999998644 3566666544322 222111
Q ss_pred CC------ccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCcc
Q 003886 198 QT------VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKR 271 (789)
Q Consensus 198 ~~------~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~ 271 (789)
+- ..|.+ ..+.+..|.|+.+..+..+..+
T Consensus 256 QYI~Dm~nTKGHi---a~lt~g~whP~~k~~FlT~s~D------------------------------------------ 290 (641)
T KOG0772|consen 256 QYIRDMYNTKGHI---AELTCGCWHPDNKEEFLTCSYD------------------------------------------ 290 (641)
T ss_pred hhhhhhhccCCce---eeeeccccccCcccceEEecCC------------------------------------------
Confidence 11 11111 1335778999988776654432
Q ss_pred CceEEEEEccCCc--eEeccC---CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEeccccc
Q 003886 272 QPSLFVININSGE--VQAVKG---IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 346 (789)
Q Consensus 272 ~~~l~v~d~~~g~--~~~l~~---~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 346 (789)
..|.+||+..-+ .+.++. -...+.+..-+|+|||+. |+-... +..|-.++...
T Consensus 291 -gtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~----iAagc~---------------DGSIQ~W~~~~-- 348 (641)
T KOG0772|consen 291 -GTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL----IAAGCL---------------DGSIQIWDKGS-- 348 (641)
T ss_pred -CcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch----hhhccc---------------CCceeeeecCC--
Confidence 345555554322 122210 112335668899999998 776542 12344444311
Q ss_pred chhhhhhhhcCCCCCCC----eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccc
Q 003886 347 SEASELELKESSSEDLP----VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 422 (789)
Q Consensus 347 ~~~~~~~~~~~~~~~~~----~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~ 422 (789)
-+.. ++.-......++..+||+||++|+.-+.++ .|.+||+..-++ ++...
T Consensus 349 -------------~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~-----------tLKvWDLrq~kk-pL~~~ 403 (641)
T KOG0772|consen 349 -------------RTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD-----------TLKVWDLRQFKK-PLNVR 403 (641)
T ss_pred -------------cccccceEeeeccCCCCceeEEEeccccchhhhccCCC-----------ceeeeecccccc-chhhh
Confidence 1111 111112223688999999999997666543 589999865332 11100
Q ss_pred eeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe----CCeEEEEEEECCCCc-EEEecCCCCCceeEEeee
Q 003886 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW----GSSQVIISVNVSSGE-LLRITPAESNFSWSLLTL 497 (789)
Q Consensus 423 ~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~----~~~~~l~~~dl~tg~-~~~lt~~~~~~~~~~~s~ 497 (789)
..+ ...|+ ....+||||.+ |++++.. .....|+.+|..+=+ +.+|--....+....|.|
T Consensus 404 -tgL--------~t~~~------~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp 467 (641)
T KOG0772|consen 404 -TGL--------PTPFP------GTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP 467 (641)
T ss_pred -cCC--------CccCC------CCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc
Confidence 000 01222 24678999987 6666542 133468888865533 334433333344456777
Q ss_pred cCCEEEEEEeC
Q 003886 498 DGDNIIAVSSS 508 (789)
Q Consensus 498 dg~~l~~~~ss 508 (789)
.=+.|++.+.+
T Consensus 468 kLNQi~~gsgd 478 (641)
T KOG0772|consen 468 KLNQIFAGSGD 478 (641)
T ss_pred hhhheeeecCC
Confidence 66666655554
|
|
| >PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.8e-07 Score=93.12 Aligned_cols=105 Identities=31% Similarity=0.475 Sum_probs=68.3
Q ss_pred cCCCCCCCchhhH-HHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHc----CCCCCccE
Q 003886 599 HGGPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM----GLANPSKV 673 (789)
Q Consensus 599 HGg~~~~~~~~~~-~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~----~~~d~~rv 673 (789)
||.+.......+. ..++.+.++||+|+++||-| .|..+. .+..+-..++++++.+.+. +.-...++
T Consensus 3 ~~~~~~~~~~~~e~~~l~~~L~~GyaVv~pDY~G---lg~~y~------~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v 73 (290)
T PF03583_consen 3 FGAPLSTVGTEYEAPFLAAWLARGYAVVAPDYEG---LGTPYL------NGRSEAYAVLDAVRAARNLPPKLGLSPSSRV 73 (290)
T ss_pred CCCCCccchhHhHHHHHHHHHHCCCEEEecCCCC---CCCccc------CcHhHHHHHHHHHHHHHhcccccCCCCCCCE
Confidence 4544433323333 35567889999999999987 444332 1223344455555555442 22235799
Q ss_pred EEEEcCccHHHHHHHHHh----CCCc---eeEEEEeCCccchhhhh
Q 003886 674 TVVGGSHGGFLTTHLIGQ----APDK---FVAAAARNPLCNLALMV 712 (789)
Q Consensus 674 ~l~G~S~GG~~a~~~~~~----~p~~---~~a~v~~~pv~~~~~~~ 712 (789)
+++|+|.||..+.+++.. .||+ +.++++.+|..|+..+.
T Consensus 74 ~l~GySqGG~Aa~~AA~l~~~YApeL~~~l~Gaa~gg~~~dl~~~~ 119 (290)
T PF03583_consen 74 ALWGYSQGGQAALWAAELAPSYAPELNRDLVGAAAGGPPADLAALL 119 (290)
T ss_pred EEEeeCccHHHHHHHHHHhHHhCcccccceeEEeccCCccCHHHHH
Confidence 999999999999988754 3554 78999999988876554
|
Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process |
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.8e-07 Score=89.10 Aligned_cols=200 Identities=15% Similarity=0.185 Sum_probs=138.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEec--CCCccccccCCCcccceeecCCCCEEEEEeecC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHV--PQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~--~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~ 229 (789)
..+....||.|...||..+.++ .+.+| .+|+..+.++- ..++ .+++||.|+..|+..+.+.
T Consensus 264 ~aVlci~FSRDsEMlAsGsqDG-----kIKvWri~tG~ClRrFdrAHtkGv----------t~l~FSrD~SqiLS~sfD~ 328 (508)
T KOG0275|consen 264 DAVLCISFSRDSEMLASGSQDG-----KIKVWRIETGQCLRRFDRAHTKGV----------TCLSFSRDNSQILSASFDQ 328 (508)
T ss_pred cceEEEeecccHHHhhccCcCC-----cEEEEEEecchHHHHhhhhhccCe----------eEEEEccCcchhhcccccc
Confidence 4578899999999999766543 35556 34554444432 3444 7999999999999888776
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEec-cCCCCCCccceEEEeeCCCC
Q 003886 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l-~~~~~~~~~~~~~wSPDg~~ 308 (789)
..+. -....++..+....+.+|.....|.+|+...++...+..+.||+..+++.... +....+..+.++..-|-...
T Consensus 329 tvRi--HGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe 406 (508)
T KOG0275|consen 329 TVRI--HGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE 406 (508)
T ss_pred eEEE--eccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc
Confidence 4321 11223344455567889999999999987777777889999999988765332 22344567777777776644
Q ss_pred CccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC---CCccCcceecCCCCE
Q 003886 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES---ISSAFFPRFSPDGKF 385 (789)
Q Consensus 309 ~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~---~~~~~~p~~SpDG~~ 385 (789)
-+.+. ||...+|++++ .+..++..+.+ .+..-....||-|.+
T Consensus 407 ----h~iVC--------------Nrsntv~imn~-----------------qGQvVrsfsSGkREgGdFi~~~lSpkGew 451 (508)
T KOG0275|consen 407 ----HFIVC--------------NRSNTVYIMNM-----------------QGQVVRSFSSGKREGGDFINAILSPKGEW 451 (508)
T ss_pred ----eEEEE--------------cCCCeEEEEec-----------------cceEEeeeccCCccCCceEEEEecCCCcE
Confidence 33344 35568999998 66667777765 344566788999999
Q ss_pred EEEEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 386 la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
++.+..+. -||.+...+|+.
T Consensus 452 iYcigED~-----------vlYCF~~~sG~L 471 (508)
T KOG0275|consen 452 IYCIGEDG-----------VLYCFSVLSGKL 471 (508)
T ss_pred EEEEccCc-----------EEEEEEeecCce
Confidence 98777553 589998877665
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.1e-05 Score=79.45 Aligned_cols=286 Identities=13% Similarity=0.048 Sum_probs=159.4
Q ss_pred ceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEe-cCCCcc
Q 003886 125 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFH-VPQTVH 201 (789)
Q Consensus 125 ~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~-~~~~~~ 201 (789)
.+.+||... .+..+..+|... ..+....||-||.+||..--. ....+| ..+..+..+. .-.+.
T Consensus 86 D~AflW~~~---~ge~~~eltgHK-----DSVt~~~FshdgtlLATGdms-----G~v~v~~~stg~~~~~~~~e~~di- 151 (399)
T KOG0296|consen 86 DLAFLWDIS---TGEFAGELTGHK-----DSVTCCSFSHDGTLLATGDMS-----GKVLVFKVSTGGEQWKLDQEVEDI- 151 (399)
T ss_pred ceEEEEEcc---CCcceeEecCCC-----CceEEEEEccCceEEEecCCC-----ccEEEEEcccCceEEEeecccCce-
Confidence 456777754 344556666665 468889999999999974322 234455 3444444443 22233
Q ss_pred ccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEcc
Q 003886 202 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 281 (789)
Q Consensus 202 g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 281 (789)
.-+.|.|-+..|++.+.+.. .+.|..+.....+....+..-...+.|.||+.....+..+..|.+||+.
T Consensus 152 ---------eWl~WHp~a~illAG~~DGs--vWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~k 220 (399)
T KOG0296|consen 152 ---------EWLKWHPRAHILLAGSTDGS--VWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPK 220 (399)
T ss_pred ---------EEEEecccccEEEeecCCCc--EEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecC
Confidence 67899998887777766653 3556655544445555555556677899996666666778999999999
Q ss_pred CCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCC
Q 003886 282 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 361 (789)
Q Consensus 282 ~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 361 (789)
+|.+....+........-..++.+|. +++.++... ..+.++. .+
T Consensus 221 tg~p~~~~~~~e~~~~~~~~~~~~~~-----~~~~g~~e~--------------~~~~~~~-----------------~s 264 (399)
T KOG0296|consen 221 TGQPLHKITQAEGLELPCISLNLAGS-----TLTKGNSEG--------------VACGVNN-----------------GS 264 (399)
T ss_pred CCceeEEecccccCcCCccccccccc-----eeEeccCCc--------------cEEEEcc-----------------cc
Confidence 99765431111122222334444554 455553322 2333332 22
Q ss_pred CCeeecCC---------C---CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEee
Q 003886 362 LPVVNLTE---------S---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (789)
Q Consensus 362 ~~~~~Lt~---------~---~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~ 429 (789)
+++..... . ...+.+..||.+=...|..+. ...|.+||+.....|.+-....
T Consensus 265 gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~v-----------dG~i~iyD~a~~~~R~~c~he~----- 328 (399)
T KOG0296|consen 265 GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSV-----------DGTIAIYDLAASTLRHICEHED----- 328 (399)
T ss_pred ceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccc-----------cceEEEEecccchhheeccCCC-----
Confidence 22222211 1 112333344433222222222 2368999988766553322222
Q ss_pred eeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC-CceeEEeeecCCEEEEEE
Q 003886 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~-~~~~~~~s~dg~~l~~~~ 506 (789)
++..+.|.+ ..+| +++...| .++.+|..+|++.-...++. .+....++++++.++.++
T Consensus 329 ---------------~V~~l~w~~-t~~l-~t~c~~g--~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 329 ---------------GVTKLKWLN-TDYL-LTACANG--KVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVS 387 (399)
T ss_pred ---------------ceEEEEEcC-cchh-eeeccCc--eEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEec
Confidence 233556876 4444 4444444 56666888998876655543 444557777777655444
|
|
| >COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-06 Score=77.23 Aligned_cols=149 Identities=17% Similarity=0.230 Sum_probs=97.2
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCC--CCCchhhccCCCCCCcccHHHHHHHHHHHHHcCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSL--GFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~--G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (789)
...-+||+.||.+.++.+......+..|+.+|+.|.-+++.-.- -.|. ...+...+.. -.+.+.++..+.+.
T Consensus 12 ~~~~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~---rkPp~~~~t~-~~~~~~~~aql~~~-- 85 (213)
T COG3571 12 PAPVTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGR---RKPPPGSGTL-NPEYIVAIAQLRAG-- 85 (213)
T ss_pred CCCEEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccC---CCCcCccccC-CHHHHHHHHHHHhc--
Confidence 34457888999888888887777888999999999999974210 0110 0111111111 23445555566665
Q ss_pred CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeC-CccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHH
Q 003886 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN-PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRF 746 (789)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~-pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (789)
.+..++++-|+||||-++.+.+..-.-.+.++++.. |+.. -+.|. ..
T Consensus 86 l~~gpLi~GGkSmGGR~aSmvade~~A~i~~L~clgYPfhp---------------------------pGKPe-----~~ 133 (213)
T COG3571 86 LAEGPLIIGGKSMGGRVASMVADELQAPIDGLVCLGYPFHP---------------------------PGKPE-----QL 133 (213)
T ss_pred ccCCceeeccccccchHHHHHHHhhcCCcceEEEecCccCC---------------------------CCCcc-----cc
Confidence 466789999999999999988765333366666542 3221 01111 11
Q ss_pred HhcCccccCCCCCCCEEEEEeCCCCCCChHHHHH
Q 003886 747 HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780 (789)
Q Consensus 747 ~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~ 780 (789)
-..++..+++|+||.||+.|+.-..++...
T Consensus 134 ----Rt~HL~gl~tPtli~qGtrD~fGtr~~Va~ 163 (213)
T COG3571 134 ----RTEHLTGLKTPTLITQGTRDEFGTRDEVAG 163 (213)
T ss_pred ----hhhhccCCCCCeEEeecccccccCHHHHHh
Confidence 135788999999999999999887776643
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.56 E-value=2e-05 Score=83.19 Aligned_cols=261 Identities=13% Similarity=0.077 Sum_probs=133.6
Q ss_pred CCCCCceEEEEEeec-hhhcccceeEEEEEEeecCCCCccceeecCCcc--eecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003886 104 GNGNGTQAMFSISQP-NLLANKRKKFMLSTVISKENENSVTFQWAPFPV--EMTGASAVVPSPSGSKLLVVRNPENESPI 180 (789)
Q Consensus 104 ~spdg~~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~--~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (789)
.||||+.+....+-. -+..++..-.|..+++.+. ....++...+-|- ........++||||++|++.... ....
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~-~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~--p~~~ 129 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH-LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS--PSPA 129 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccC-cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC--CCCE
Confidence 579999885443311 1233444556777775332 1122222111000 01123478899999998654322 2334
Q ss_pred EEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC----CCccCCCCCCCCCCcCCCCCCC
Q 003886 181 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK----PTFSLGSTKGGSSDKDCNSWKG 255 (789)
Q Consensus 181 ~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 255 (789)
+-.++ ..++....+.++...+ +|.-+.-.....+.||+.+.+..+...... +.+.. .......++
T Consensus 130 V~VvD~~~~kvv~ei~vp~~~~--vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~----~~~~v~~rP---- 199 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDVPDCYH--IFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHP----EDEYLINHP---- 199 (352)
T ss_pred EEEEECCCCcEEEEEeCCCCcE--EEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecC----CccccccCC----
Confidence 66677 5667777777755443 222222223456789987765554432210 00000 000000111
Q ss_pred cceeeC-CcccccCCccCceEEEEEccCCceEeccCC--------CCCCcc---ceEEEeeCCCCCccEEEEEeecCCce
Q 003886 256 QGDWEE-DWGETYAGKRQPSLFVININSGEVQAVKGI--------PKSLSV---GQVVWAPLNEGLHQYLVFVGWSSETR 323 (789)
Q Consensus 256 ~~~~~~-d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~--------~~~~~~---~~~~wSPDg~~~~~~l~f~~~~~~~~ 323 (789)
.|.+ |....|.... ..|+++|+.+.++...... ...... ..++++|||++ ++.......
T Consensus 200 --~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~----lyV~~~~~~-- 270 (352)
T TIGR02658 200 --AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDR----IYLLADQRA-- 270 (352)
T ss_pred --ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCE----EEEEecCCc--
Confidence 2233 4333333333 8899999766544333100 011222 23899999997 544342111
Q ss_pred eeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCee-ecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccc
Q 003886 324 KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 402 (789)
Q Consensus 324 ~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~ 402 (789)
+... .....+|+.+|. .+.+.. ++.- .......++||||+.++|..+..
T Consensus 271 ~~th---k~~~~~V~ViD~-----------------~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~--------- 320 (352)
T TIGR02658 271 KWTH---KTASRFLFVVDA-----------------KTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTG--------- 320 (352)
T ss_pred cccc---cCCCCEEEEEEC-----------------CCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCC---------
Confidence 0000 012247999998 555543 3332 33577899999999666777643
Q ss_pred cceeEEeecCCCCC
Q 003886 403 TDSLHRIDWPTNGN 416 (789)
Q Consensus 403 ~~~L~~~d~~~~~~ 416 (789)
.+.|.++|..+++.
T Consensus 321 s~~VsViD~~t~k~ 334 (352)
T TIGR02658 321 DKTLYIFDAETGKE 334 (352)
T ss_pred CCcEEEEECcCCeE
Confidence 24599999887654
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.8e-07 Score=93.41 Aligned_cols=181 Identities=14% Similarity=0.184 Sum_probs=114.3
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH-HHHHHHHCCcEEEEEcCCCCCCCCchhhccCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 645 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~ 645 (789)
..++.||.++..+++.-.....+...-+||..-|..+ .|.- .+.-=++.||.|+-.|.+| |+.+..-
T Consensus 218 kiks~dgneiDtmF~d~r~n~~~ngq~LvIC~EGNAG-----FYEvG~m~tP~~lgYsvLGwNhPG---FagSTG~---- 285 (517)
T KOG1553|consen 218 KIKSSDGNEIDTMFLDGRPNQSGNGQDLVICFEGNAG-----FYEVGVMNTPAQLGYSVLGWNHPG---FAGSTGL---- 285 (517)
T ss_pred EEeecCCcchhheeecCCCCCCCCCceEEEEecCCcc-----ceEeeeecChHHhCceeeccCCCC---ccccCCC----
Confidence 4466788889988886442233444567777777333 1111 1223457899999999976 4433211
Q ss_pred CCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhh
Q 003886 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (789)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~ 725 (789)
-+...+.+.+.+++++++..-....+.|.++|||.||+.++|+|..+|| ++++|+.+.+-|+..+.-..-...|. .
T Consensus 286 P~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllpLAl~rMP~~~~---g 361 (517)
T KOG1553|consen 286 PYPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLPLALFRMPTFFS---G 361 (517)
T ss_pred CCcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhhHHhhhchHHHH---H
Confidence 1223456677788999998755778899999999999999999999997 89999999888764432111111111 0
Q ss_pred ccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCCh
Q 003886 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPV 775 (789)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~ 775 (789)
+- ......+...+....+.+.+.|+++|--++|+++..
T Consensus 362 iV------------~~aiRnh~NLnnaell~ry~GPi~lIRRt~dEIitt 399 (517)
T KOG1553|consen 362 IV------------EHAIRNHMNLNNAELLARYKGPIRLIRRTQDEIITT 399 (517)
T ss_pred HH------------HHHHHHhcccchHHHHHhhcCchhHhhhhhHhhhhc
Confidence 00 011222222233334556778888888888877643
|
|
| >COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-06 Score=90.19 Aligned_cols=113 Identities=19% Similarity=0.259 Sum_probs=74.2
Q ss_pred CCCcEEEEEcCCCCCCCchh--------hHHHH----HHHHHCCcEEEEEcCCCCC-CC-CchhhccCC----CCCCccc
Q 003886 590 SCDPLIVVLHGGPHSVSLSS--------YSKSL----AFLSSVGYSLLIVNYRGSL-GF-GEEALQSLP----GKVGSQD 651 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~--------~~~~~----~~la~~Gy~V~~~d~rGs~-G~-G~~~~~~~~----~~~~~~~ 651 (789)
.+..+|+++|+-.++..... |...+ +.+.-.-|.||++|.-|++ |. |....+... ..+....
T Consensus 49 ~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~t 128 (368)
T COG2021 49 EKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVIT 128 (368)
T ss_pred cCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCccc
Confidence 56789999999544322222 32111 1344445999999998854 22 222222110 1223356
Q ss_pred HHHHHHHHHHHHHcCCCCCccEE-EEEcCccHHHHHHHHHhCCCceeEEEEeCC
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNP 704 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~-l~G~S~GG~~a~~~~~~~p~~~~a~v~~~p 704 (789)
+.|.+++-+.|+++ +..+++. |+|.||||+.++..+..+||+++.+|..+.
T Consensus 129 i~D~V~aq~~ll~~--LGI~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~ 180 (368)
T COG2021 129 IRDMVRAQRLLLDA--LGIKKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIAT 180 (368)
T ss_pred HHHHHHHHHHHHHh--cCcceEeeeeccChHHHHHHHHHHhChHHHhhhheecc
Confidence 88999888888886 3345665 999999999999999999999988777765
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.3e-06 Score=90.51 Aligned_cols=242 Identities=15% Similarity=0.168 Sum_probs=139.6
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
..+....|+|+|++||.....+ .+.||+..+..++........+.| ..++|+ +..+...+.+...-.
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g-----~v~iwD~~~~k~~~~~~~~h~~rv------g~laW~--~~~lssGsr~~~I~~ 284 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDG-----TVQIWDVKEQKKTRTLRGSHASRV------GSLAWN--SSVLSSGSRDGKILN 284 (484)
T ss_pred CceEEEEECCCCCEEEEeecCC-----eEEEEehhhccccccccCCcCcee------EEEecc--CceEEEecCCCcEEE
Confidence 4688999999999999976654 677776444444333322222223 788888 222332222211100
Q ss_pred CCccCCCCCCC-CCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc-eEeccCCCCCCccceEEEeeCCCCCcc
Q 003886 234 PTFSLGSTKGG-SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 234 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
++....... .....+..-+-...|.+|......+..++.+++||....+ ...+ +.....+-.++|+|=-+.
T Consensus 285 --~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~--~~H~aAVKA~awcP~q~~--- 357 (484)
T KOG0305|consen 285 --HDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF--TEHTAAVKALAWCPWQSG--- 357 (484)
T ss_pred --EEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE--eccceeeeEeeeCCCccC---
Confidence 000000000 0011122212223577786666677778999999984433 3344 445567788999998777
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEec
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
|+-++-.. .+..|..+|. .++...........+.+..||+..+.|+....
T Consensus 358 -lLAsGGGs------------~D~~i~fwn~-----------------~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG 407 (484)
T KOG0305|consen 358 -LLATGGGS------------ADRCIKFWNT-----------------NTGARIDSVDTGSQVCSLIWSKKYKELLSTHG 407 (484)
T ss_pred -ceEEcCCC------------cccEEEEEEc-----------------CCCcEecccccCCceeeEEEcCCCCEEEEecC
Confidence 66665221 1235777776 55655554445567899999999999987663
Q ss_pred CCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 392 ~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
. ..++|-+|++++-.....-.+. ...+..+.|+|||.+|+ ++..+.+.++|
T Consensus 408 ~---------s~n~i~lw~~ps~~~~~~l~gH-------------------~~RVl~la~SPdg~~i~-t~a~DETlrfw 458 (484)
T KOG0305|consen 408 Y---------SENQITLWKYPSMKLVAELLGH-------------------TSRVLYLALSPDGETIV-TGAADETLRFW 458 (484)
T ss_pred C---------CCCcEEEEeccccceeeeecCC-------------------cceeEEEEECCCCCEEE-EecccCcEEec
Confidence 3 2357888888773322111111 12355778999999774 55555566666
Q ss_pred EEE
Q 003886 472 SVN 474 (789)
Q Consensus 472 ~~d 474 (789)
.+-
T Consensus 459 ~~f 461 (484)
T KOG0305|consen 459 NLF 461 (484)
T ss_pred ccc
Confidence 554
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-06 Score=89.91 Aligned_cols=211 Identities=14% Similarity=0.150 Sum_probs=122.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
..+....||++|..++..+.+. .+.+|+ +|+....+++..-. ..+.+.||+..++++...
T Consensus 259 k~Vrd~~~s~~g~~fLS~sfD~-----~lKlwDtETG~~~~~f~~~~~~----------~cvkf~pd~~n~fl~G~s--- 320 (503)
T KOG0282|consen 259 KPVRDASFNNCGTSFLSASFDR-----FLKLWDTETGQVLSRFHLDKVP----------TCVKFHPDNQNIFLVGGS--- 320 (503)
T ss_pred hhhhhhhccccCCeeeeeecce-----eeeeeccccceEEEEEecCCCc----------eeeecCCCCCcEEEEecC---
Confidence 3477889999999998887654 678884 55555555543333 689999999888776432
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCC-ccceEEEeeCCCCCc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL-SVGQVVWAPLNEGLH 310 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~-~~~~~~wSPDg~~~~ 310 (789)
+..|..||+.+|++.+- ...++ .+....|-|+|++
T Consensus 321 ----------------------------------------d~ki~~wDiRs~kvvqe--Yd~hLg~i~~i~F~~~g~r-- 356 (503)
T KOG0282|consen 321 ----------------------------------------DKKIRQWDIRSGKVVQE--YDRHLGAILDITFVDEGRR-- 356 (503)
T ss_pred ----------------------------------------CCcEEEEeccchHHHHH--HHhhhhheeeeEEccCCce--
Confidence 35677788888776543 23333 4556677777777
Q ss_pred cEEEEEeecCCcee----------------------------eeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC
Q 003886 311 QYLVFVGWSSETRK----------------------------LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL 362 (789)
Q Consensus 311 ~~l~f~~~~~~~~~----------------------------~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 362 (789)
.+.++....-+- .++..|.+-...|++..+.- .-.-.
T Consensus 357 --FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~-------------~~r~n 421 (503)
T KOG0282|consen 357 --FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP-------------PFRLN 421 (503)
T ss_pred --EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccc-------------ccccC
Confidence 554443222110 11111222222333333200 00001
Q ss_pred CeeecCCC--CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCcc
Q 003886 363 PVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 440 (789)
Q Consensus 363 ~~~~Lt~~--~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g 440 (789)
..++...+ .|......|||||.+|+.-..+ ..++.|||.+-...........
T Consensus 422 kkK~feGh~vaGys~~v~fSpDG~~l~SGdsd-----------G~v~~wdwkt~kl~~~lkah~~--------------- 475 (503)
T KOG0282|consen 422 KKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSD-----------GKVNFWDWKTTKLVSKLKAHDQ--------------- 475 (503)
T ss_pred HhhhhcceeccCceeeEEEcCCCCeEEeecCC-----------ccEEEeechhhhhhhccccCCc---------------
Confidence 11122222 4567789999999998765544 3699999988544322111111
Q ss_pred ccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 441 LYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 441 ~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
-.....|.|-....+.+..++|...+|
T Consensus 476 ----~ci~v~wHP~e~Skvat~~w~G~Ikiw 502 (503)
T KOG0282|consen 476 ----PCIGVDWHPVEPSKVATCGWDGLIKIW 502 (503)
T ss_pred ----ceEEEEecCCCcceeEecccCceeEec
Confidence 122456888777777777788877665
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.2e-05 Score=94.58 Aligned_cols=241 Identities=14% Similarity=0.094 Sum_probs=132.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc------e--eEEEecCCCccccccCCCcccceeecCC-CCEEEE
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ------L--EKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIAY 224 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~------~--~~~~~~~~~~~g~v~~d~~~~~~~wSpD-g~~la~ 224 (789)
+.+...+|+|||++||.....+ .+.+|+... . ....... .+. .+..+.|+|. ++.||.
T Consensus 484 ~~V~~i~fs~dg~~latgg~D~-----~I~iwd~~~~~~~~~~~~~~~~~~~--~~~------~v~~l~~~~~~~~~las 550 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVNK-----KIKIFECESIIKDGRDIHYPVVELA--SRS------KLSGICWNSYIKSQVAS 550 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCCC-----EEEEEECCcccccccccccceEEec--ccC------ceeeEEeccCCCCEEEE
Confidence 3477889999999998876543 456663211 0 0011111 111 2368899875 677776
Q ss_pred EeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeC-CcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEe
Q 003886 225 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE-DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWA 303 (789)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wS 303 (789)
...+.... .|+............+...+....|.+ +....+++..+..|.+||+.++..... ......+..+.|+
T Consensus 551 ~~~Dg~v~--lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~--~~~~~~v~~v~~~ 626 (793)
T PLN00181 551 SNFEGVVQ--VWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT--IKTKANICCVQFP 626 (793)
T ss_pred EeCCCeEE--EEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE--EecCCCeEEEEEe
Confidence 66554332 344333322233334444444556765 333344566678999999988765433 2223355677885
Q ss_pred -eCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC-CeeecCCCCCccCcceecC
Q 003886 304 -PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSP 381 (789)
Q Consensus 304 -PDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~Sp 381 (789)
++|+. |+..+ .+..|+++|+. ... ....+..+...+....|+
T Consensus 627 ~~~g~~----latgs---------------~dg~I~iwD~~----------------~~~~~~~~~~~h~~~V~~v~f~- 670 (793)
T PLN00181 627 SESGRS----LAFGS---------------ADHKVYYYDLR----------------NPKLPLCTMIGHSKTVSYVRFV- 670 (793)
T ss_pred CCCCCE----EEEEe---------------CCCeEEEEECC----------------CCCccceEecCCCCCEEEEEEe-
Confidence 46776 66554 22368888872 112 234555566667788887
Q ss_pred CCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEE
Q 003886 382 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 461 (789)
Q Consensus 382 DG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~ 461 (789)
||..|+..+.+. .|.+||+..+.... .. ..+..+ .| +...+..+.|+++++.| ++
T Consensus 671 ~~~~lvs~s~D~-----------~ikiWd~~~~~~~~-~~--~~l~~~---------~g-h~~~i~~v~~s~~~~~l-as 725 (793)
T PLN00181 671 DSSTLVSSSTDN-----------TLKLWDLSMSISGI-NE--TPLHSF---------MG-HTNVKNFVGLSVSDGYI-AT 725 (793)
T ss_pred CCCEEEEEECCC-----------EEEEEeCCCCcccc-CC--cceEEE---------cC-CCCCeeEEEEcCCCCEE-EE
Confidence 788877666442 58889886432100 00 001000 00 00123356789998744 55
Q ss_pred EEeCCeEEEEE
Q 003886 462 SIWGSSQVIIS 472 (789)
Q Consensus 462 ~~~~~~~~l~~ 472 (789)
+..++...+|.
T Consensus 726 gs~D~~v~iw~ 736 (793)
T PLN00181 726 GSETNEVFVYH 736 (793)
T ss_pred EeCCCEEEEEE
Confidence 56666655654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.3e-05 Score=79.96 Aligned_cols=261 Identities=13% Similarity=0.195 Sum_probs=148.7
Q ss_pred ccEEEEeCCCCCeEEEEecCC------CCCCeEEEEe--cCCceeEEEecC--CCccccccCCCcccceeecCCCCEEEE
Q 003886 155 GASAVVPSPSGSKLLVVRNPE------NESPIQFELW--SQSQLEKEFHVP--QTVHGSVYADGWFEGISWNSDETLIAY 224 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~------~~~~~~~~i~--~~~~~~~~~~~~--~~~~g~v~~d~~~~~~~wSpDg~~la~ 224 (789)
++....|||.-++|+.-+... +...+-+.|| .+|...+-+.+. ...+ +.-+.||-|+|.+|-
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~--------WP~frWS~DdKy~Ar 322 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLK--------WPIFRWSHDDKYFAR 322 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccc--------cceEEeccCCceeEE
Confidence 688899999999998765332 1233555677 577777666652 2221 246899999998886
Q ss_pred EeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEee
Q 003886 225 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP 304 (789)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP 304 (789)
...+.-. .| ..+...++|..+ ..+ ..+.++.|||
T Consensus 323 m~~~sis--------------------------Iy-----------Etpsf~lld~Ks---lki------~gIr~FswsP 356 (698)
T KOG2314|consen 323 MTGNSIS--------------------------IY-----------ETPSFMLLDKKS---LKI------SGIRDFSWSP 356 (698)
T ss_pred eccceEE--------------------------EE-----------ecCceeeecccc---cCC------ccccCcccCC
Confidence 5331100 00 012233333221 111 2467899999
Q ss_pred CCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCC
Q 003886 305 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK 384 (789)
Q Consensus 305 Dg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~ 384 (789)
-+.- |+|-.-+.. +-++.+-++.++ ...+++...-..-.....-|-..|+
T Consensus 357 ~~~l----lAYwtpe~~----------~~parvtL~evP----------------s~~~iRt~nlfnVsDckLhWQk~gd 406 (698)
T KOG2314|consen 357 TSNL----LAYWTPETN----------NIPARVTLMEVP----------------SKREIRTKNLFNVSDCKLHWQKSGD 406 (698)
T ss_pred Ccce----EEEEccccc----------CCcceEEEEecC----------------ccceeeeccceeeeccEEEeccCCc
Confidence 9988 998763322 344556666663 2223332222233456778999999
Q ss_pred EEEEEecCCCCCC-CCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEE
Q 003886 385 FLVFLSAKSSVDS-GAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 463 (789)
Q Consensus 385 ~la~~s~~~~~~~-g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (789)
+|++-.++.+... +.-....+|++++ . +.+.- +++.+- ..+..++|-|.|.+..+.+.
T Consensus 407 yLcvkvdR~tK~~~~g~f~n~eIfrir--e---KdIpv---e~velk-------------e~vi~FaWEP~gdkF~vi~g 465 (698)
T KOG2314|consen 407 YLCVKVDRHTKSKVKGQFSNLEIFRIR--E---KDIPV---EVVELK-------------ESVIAFAWEPHGDKFAVISG 465 (698)
T ss_pred EEEEEEEeeccccccceEeeEEEEEee--c---cCCCc---eeeecc-------------hheeeeeeccCCCeEEEEEc
Confidence 9999887764321 1111223455553 2 11211 111110 13457889999998877765
Q ss_pred eC--CeEEEEEEECCCCcEEEecCCC-CCceeEEeeecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 464 WG--SSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 464 ~~--~~~~l~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
.. .....|.+....++...+..-+ .......|+|.|+.++...-.. .-..++.+|..
T Consensus 466 ~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s-~~g~l~F~D~~ 525 (698)
T KOG2314|consen 466 NTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVS-RRGDLEFYDTD 525 (698)
T ss_pred cccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecc-cccceEEEecc
Confidence 44 4567788876555554443222 1335568999999876655332 44557777754
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-06 Score=96.39 Aligned_cols=193 Identities=16% Similarity=0.081 Sum_probs=117.3
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
.+.+||||.+.|+-.+++.+.+- |...........+.+...+....|.|.+=.-.+...+..-.+|..+...+.++
T Consensus 455 yg~sFsPd~rfLlScSED~svRL--Wsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRi-- 530 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRL--WSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRI-- 530 (707)
T ss_pred eeeeecccccceeeccCCcceee--eecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhh--
Confidence 68999999999999999887663 33222222222222222222233444421111222344445666666666666
Q ss_pred CCCCC-ccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCC
Q 003886 291 IPKSL-SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 369 (789)
Q Consensus 291 ~~~~~-~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~ 369 (789)
..++. .+.-+.|.|++.+ ++-.+ . +..+..+|+. .+..+|..++
T Consensus 531 faghlsDV~cv~FHPNs~Y----~aTGS--s-------------D~tVRlWDv~----------------~G~~VRiF~G 575 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSNY----VATGS--S-------------DRTVRLWDVS----------------TGNSVRIFTG 575 (707)
T ss_pred hcccccccceEEECCcccc----cccCC--C-------------CceEEEEEcC----------------CCcEEEEecC
Confidence 45554 4566899999886 44332 1 1245556652 4556777788
Q ss_pred CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCC
Q 003886 370 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 449 (789)
Q Consensus 370 ~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~ 449 (789)
+.+.+...+|||+|++|+..+.+. .|.+||+.++.......+.. ..+.++
T Consensus 576 H~~~V~al~~Sp~Gr~LaSg~ed~-----------~I~iWDl~~~~~v~~l~~Ht-------------------~ti~Sl 625 (707)
T KOG0263|consen 576 HKGPVTALAFSPCGRYLASGDEDG-----------LIKIWDLANGSLVKQLKGHT-------------------GTIYSL 625 (707)
T ss_pred CCCceEEEEEcCCCceEeecccCC-----------cEEEEEcCCCcchhhhhccc-------------------CceeEE
Confidence 889999999999999998766443 59999998866532222211 234577
Q ss_pred ccccCCCEEEEEEEeCCeEEEEEE
Q 003886 450 PWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 450 ~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
.||.||. +++++..+....+|-+
T Consensus 626 sFS~dg~-vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 626 SFSRDGN-VLASGGADNSVRLWDL 648 (707)
T ss_pred EEecCCC-EEEecCCCCeEEEEEc
Confidence 8999998 4455555556667733
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.3e-05 Score=90.40 Aligned_cols=207 Identities=14% Similarity=0.109 Sum_probs=120.2
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc--eEec
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAV 288 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~--~~~l 288 (789)
..+.|||||++|||..... +....+|+++|+.+|+ ...+
T Consensus 130 ~~~~~Spdg~~la~~~d~~---------------------------------------G~E~~~l~v~d~~tg~~l~~~i 170 (686)
T PRK10115 130 GGMAITPDNTIMALAEDFL---------------------------------------SRRQYGIRFRNLETGNWYPELL 170 (686)
T ss_pred eEEEECCCCCEEEEEecCC---------------------------------------CcEEEEEEEEECCCCCCCCccc
Confidence 6789999999999985432 1145789999999987 3333
Q ss_pred cCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC--Ceee
Q 003886 289 KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVVN 366 (789)
Q Consensus 289 ~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~ 366 (789)
. ... ..++|++||+. |+|+..... ..++.+||+.++ .++ +.+.
T Consensus 171 ~----~~~-~~~~w~~D~~~----~~y~~~~~~---------~~~~~~v~~h~l-----------------gt~~~~d~l 215 (686)
T PRK10115 171 D----NVE-PSFVWANDSWT----FYYVRKHPV---------TLLPYQVWRHTI-----------------GTPASQDEL 215 (686)
T ss_pred c----Ccc-eEEEEeeCCCE----EEEEEecCC---------CCCCCEEEEEEC-----------------CCChhHCeE
Confidence 1 112 46999999999 999886321 014568999998 444 3344
Q ss_pred cCCC-CCccC-cceecCCCCEEEEEecCCCCCCCCccccceeEEeecC--CCCCCCcccceeeEEeeeeccCCCCCcccc
Q 003886 367 LTES-ISSAF-FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGLY 442 (789)
Q Consensus 367 Lt~~-~~~~~-~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~--~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~ 442 (789)
|... ..... ....+.||++++..+... ....+++++.+ .+..+.+ ...+.+.. |
T Consensus 216 v~~e~~~~~~~~~~~s~d~~~l~i~~~~~--------~~~~~~l~~~~~~~~~~~~~----------~~~~~~~~----~ 273 (686)
T PRK10115 216 VYEEKDDTFYVSLHKTTSKHYVVIHLASA--------TTSEVLLLDAELADAEPFVF----------LPRRKDHE----Y 273 (686)
T ss_pred EEeeCCCCEEEEEEEcCCCCEEEEEEECC--------ccccEEEEECcCCCCCceEE----------EECCCCCE----E
Confidence 4332 22122 223355999987555443 23467777742 2221111 11111100 0
Q ss_pred ccCCCCCccccCCCEEEEEEEeC-CeEEEEEEECC-CCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEee
Q 003886 443 SSSILSNPWLSDGCTMLLSSIWG-SSQVIISVNVS-SGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (789)
Q Consensus 443 ~~~~~~~~ws~Dg~~l~~~~~~~-~~~~l~~~dl~-tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~ 520 (789)
.....+..+|+.++.+ ....|+.+++. .++.+.+.+.........+...++.|++.......+ .+++++.
T Consensus 274 -------~~~~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~-~l~~~~~ 345 (686)
T PRK10115 274 -------SLDHYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLT-SLRQINR 345 (686)
T ss_pred -------EEEeCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEE-EEEEEcC
Confidence 1112345788877654 45678988887 466666766633223334555577777776655443 3666665
Q ss_pred c
Q 003886 521 V 521 (789)
Q Consensus 521 ~ 521 (789)
.
T Consensus 346 ~ 346 (686)
T PRK10115 346 K 346 (686)
T ss_pred C
Confidence 3
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.2e-06 Score=88.38 Aligned_cols=269 Identities=15% Similarity=0.161 Sum_probs=159.8
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecC-CCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~-~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
.....|| ....||...... + .+| ..+....+.++. ..+ ..+.|+++|+.||.........
T Consensus 180 ~nlldWs-s~n~laValg~~-----v-ylW~~~s~~v~~l~~~~~~~v----------tSv~ws~~G~~LavG~~~g~v~ 242 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVALGQS-----V-YLWSASSGSVTELCSFGEELV----------TSVKWSPDGSHLAVGTSDGTVQ 242 (484)
T ss_pred hhHhhcc-cCCeEEEEecce-----E-EEEecCCCceEEeEecCCCce----------EEEEECCCCCEEEEeecCCeEE
Confidence 3446699 555676653332 4 456 466666776652 233 7999999999999987765432
Q ss_pred CCCccCCCCCCCCCCcC-CCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003886 233 KPTFSLGSTKGGSSDKD-CNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
.|+....+....... +....+...|... ....+.+...|...|+...+...-+-......+-...|++|++.
T Consensus 243 --iwD~~~~k~~~~~~~~h~~rvg~laW~~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~--- 315 (484)
T KOG0305|consen 243 --IWDVKEQKKTRTLRGSHASRVGSLAWNSS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQ--- 315 (484)
T ss_pred --EEehhhccccccccCCcCceeEEEeccCc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCe---
Confidence 344322222222222 4444444455422 33445567788888876654211100122335668899999999
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEec
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
++-.++ +..++++|.. .......++++...+-..+|+|=-+-|+-+..
T Consensus 316 -lASGgn---------------DN~~~Iwd~~----------------~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGG 363 (484)
T KOG0305|consen 316 -LASGGN---------------DNVVFIWDGL----------------SPEPKFTFTEHTAAVKALAWCPWQSGLLATGG 363 (484)
T ss_pred -eccCCC---------------ccceEeccCC----------------CccccEEEeccceeeeEeeeCCCccCceEEcC
Confidence 887764 2357777752 44566788888888999999996555543332
Q ss_pred CCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeC-CeEEE
Q 003886 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-SSQVI 470 (789)
Q Consensus 392 ~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~-~~~~l 470 (789)
. .....|+.||..++....... .+..+-.+.|++..+.|+.+.... ....|
T Consensus 364 G--------s~D~~i~fwn~~~g~~i~~vd--------------------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~l 415 (484)
T KOG0305|consen 364 G--------SADRCIKFWNTNTGARIDSVD--------------------TGSQVCSLIWSKKYKELLSTHGYSENQITL 415 (484)
T ss_pred C--------CcccEEEEEEcCCCcEecccc--------------------cCCceeeEEEcCCCCEEEEecCCCCCcEEE
Confidence 2 234679999988765432111 112456788999999887654332 44567
Q ss_pred EEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCC
Q 003886 471 ISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 471 ~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~ 509 (789)
|.+.. -..+..++.....+....++|||..++....+-
T Consensus 416 w~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DE 453 (484)
T KOG0305|consen 416 WKYPS-MKLVAELLGHTSRVLYLALSPDGETIVTGAADE 453 (484)
T ss_pred Eeccc-cceeeeecCCcceeEEEEECCCCCEEEEecccC
Confidence 77653 122333333333445567888888776555443
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.9e-06 Score=78.87 Aligned_cols=186 Identities=17% Similarity=0.172 Sum_probs=118.7
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceE-ecc
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVK 289 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~-~l~ 289 (789)
..+.|+-||++||..+.++ .+.+|+++.+..+ .+.
T Consensus 24 ~Sv~wn~~g~~lasgs~dk--------------------------------------------tv~v~n~e~~r~~~~~~ 59 (313)
T KOG1407|consen 24 HSVAWNCDGTKLASGSFDK--------------------------------------------TVSVWNLERDRFRKELV 59 (313)
T ss_pred eEEEEcccCceeeecccCC--------------------------------------------ceEEEEecchhhhhhhc
Confidence 6899999999999876553 3445565555221 111
Q ss_pred CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCC
Q 003886 290 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 369 (789)
Q Consensus 290 ~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~ 369 (789)
.-....++.++.|+|-..- +++++.. ...|.++|+ ..+++..-+.
T Consensus 60 ~~gh~~svdql~w~~~~~d----~~atas~--------------dk~ir~wd~-----------------r~~k~~~~i~ 104 (313)
T KOG1407|consen 60 YRGHTDSVDQLCWDPKHPD----LFATASG--------------DKTIRIWDI-----------------RSGKCTARIE 104 (313)
T ss_pred ccCCCcchhhheeCCCCCc----ceEEecC--------------CceEEEEEe-----------------ccCcEEEEee
Confidence 1122336789999998877 7776622 226788887 5566666566
Q ss_pred CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCC
Q 003886 370 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 449 (789)
Q Consensus 370 ~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~ 449 (789)
..+......|||||+++++...++ .|-.+|..+-...... .|+ ......
T Consensus 105 ~~~eni~i~wsp~g~~~~~~~kdD-----------~it~id~r~~~~~~~~----------------~~~----~e~ne~ 153 (313)
T KOG1407|consen 105 TKGENINITWSPDGEYIAVGNKDD-----------RITFIDARTYKIVNEE----------------QFK----FEVNEI 153 (313)
T ss_pred ccCcceEEEEcCCCCEEEEecCcc-----------cEEEEEecccceeehh----------------ccc----ceeeee
Confidence 667778899999999999877664 4666776543321110 010 012345
Q ss_pred ccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeC
Q 003886 450 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (789)
Q Consensus 450 ~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss 508 (789)
.|.-++. ++|..+..|..+|..+. .-..++-|........-..|+|+|++++.-.++
T Consensus 154 ~w~~~nd-~Fflt~GlG~v~ILsyp-sLkpv~si~AH~snCicI~f~p~GryfA~GsAD 210 (313)
T KOG1407|consen 154 SWNNSND-LFFLTNGLGCVEILSYP-SLKPVQSIKAHPSNCICIEFDPDGRYFATGSAD 210 (313)
T ss_pred eecCCCC-EEEEecCCceEEEEecc-ccccccccccCCcceEEEEECCCCceEeecccc
Confidence 6875554 88888887888888876 223334444444444557899999998766554
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.3e-05 Score=77.61 Aligned_cols=235 Identities=17% Similarity=0.216 Sum_probs=132.2
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeec-CCCCEEEEEeecCCCCCCCc
Q 003886 158 AVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWN-SDETLIAYVAEEPSPSKPTF 236 (789)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wS-pDg~~la~~~~~~~~~~~~~ 236 (789)
.|+|.|....|+|+.... .+++.+...+........+. . .++... +||+ |+....
T Consensus 4 gp~~d~~~g~l~~~D~~~---~~i~~~~~~~~~~~~~~~~~-~----------~G~~~~~~~g~-l~v~~~--------- 59 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPG---GRIYRVDPDTGEVEVIDLPG-P----------NGMAFDRPDGR-LYVADS--------- 59 (246)
T ss_dssp EEEEETTTTEEEEEETTT---TEEEEEETTTTEEEEEESSS-E----------EEEEEECTTSE-EEEEET---------
T ss_pred ceEEECCCCEEEEEEcCC---CEEEEEECCCCeEEEEecCC-C----------ceEEEEccCCE-EEEEEc---------
Confidence 689999888888875432 36888885555555555544 3 466677 6654 444321
Q ss_pred cCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCC----CCCccceEEEeeCCCCCccE
Q 003886 237 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP----KSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~----~~~~~~~~~wSPDg~~~~~~ 312 (789)
..+.++|+.+++++.+.... .......+++.|||+
T Consensus 60 ------------------------------------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~----- 98 (246)
T PF08450_consen 60 ------------------------------------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN----- 98 (246)
T ss_dssp ------------------------------------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS------
T ss_pred ------------------------------------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-----
Confidence 23455688888877663111 233567899999998
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
|+|+......... .....||+++. + ++.+.+..........+|||||+.|++....
T Consensus 99 ly~t~~~~~~~~~------~~~g~v~~~~~-----------------~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 99 LYVTDSGGGGASG------IDPGSVYRIDP-----------------D-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EEEEEECCBCTTC------GGSEEEEEEET-----------------T-SEEEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred EEEEecCCCcccc------ccccceEEECC-----------------C-CeEEEEecCcccccceEECCcchheeecccc
Confidence 6766532221000 00146999996 4 5566665555556789999999988776543
Q ss_pred CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (789)
..+|+++++...... +. ....+.. .+....+ ...+++..+|+ ||+... +...|++
T Consensus 155 ----------~~~i~~~~~~~~~~~-~~-~~~~~~~---~~~~~g~-------pDG~~vD~~G~-l~va~~--~~~~I~~ 209 (246)
T PF08450_consen 155 ----------NGRIWRFDLDADGGE-LS-NRRVFID---FPGGPGY-------PDGLAVDSDGN-LWVADW--GGGRIVV 209 (246)
T ss_dssp ----------TTEEEEEEEETTTCC-EE-EEEEEEE----SSSSCE-------EEEEEEBTTS--EEEEEE--TTTEEEE
T ss_pred ----------cceeEEEeccccccc-ee-eeeeEEE---cCCCCcC-------CCcceEcCCCC-EEEEEc--CCCEEEE
Confidence 346999998653331 11 0011111 1110001 22466778886 655433 3346888
Q ss_pred EECCCCcEEE-ecCCCCCceeEEee-ecCCEEEEEEe
Q 003886 473 VNVSSGELLR-ITPAESNFSWSLLT-LDGDNIIAVSS 507 (789)
Q Consensus 473 ~dl~tg~~~~-lt~~~~~~~~~~~s-~dg~~l~~~~s 507 (789)
++.+ |++.. +...........|. ++.+.|+.+.+
T Consensus 210 ~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 210 FDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred ECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 8986 65444 43332333444553 45667766653
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.6e-05 Score=78.06 Aligned_cols=229 Identities=11% Similarity=0.089 Sum_probs=140.7
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc----eE
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE----VQ 286 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~----~~ 286 (789)
..+.|++|+++|+.++.+..- -.|+.-+.......+-...|+-.-.|+|.......+.-++..-++++.+.+ ++
T Consensus 59 ~~~~ws~Dsr~ivSaSqDGkl--IvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~ 136 (343)
T KOG0286|consen 59 YAMDWSTDSRRIVSASQDGKL--IVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVR 136 (343)
T ss_pred eeeEecCCcCeEEeeccCCeE--EEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccce
Confidence 689999999999988876532 245544445555556677888888888886444444456666777776441 11
Q ss_pred eccCCCCC-CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCee
Q 003886 287 AVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV 365 (789)
Q Consensus 287 ~l~~~~~~-~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 365 (789)
.....+++ .....-.|-+|+. |+-.+ .+....++|++ .+...+
T Consensus 137 v~r~l~gHtgylScC~f~dD~~-----ilT~S---------------GD~TCalWDie----------------~g~~~~ 180 (343)
T KOG0286|consen 137 VSRELAGHTGYLSCCRFLDDNH-----ILTGS---------------GDMTCALWDIE----------------TGQQTQ 180 (343)
T ss_pred eeeeecCccceeEEEEEcCCCc-----eEecC---------------CCceEEEEEcc----------------cceEEE
Confidence 11112333 2445556777765 55443 22345566762 344566
Q ss_pred ecCCCCCccCcceecC-CCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCcccccc
Q 003886 366 NLTESISSAFFPRFSP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS 444 (789)
Q Consensus 366 ~Lt~~~~~~~~p~~Sp-DG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~ 444 (789)
.+..+.+.+....++| |+++++..+-+ ..-++||...+.-.+. |+| ...
T Consensus 181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD-----------~~aklWD~R~~~c~qt------------------F~g-hes 230 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSDGNTFVSGGCD-----------KSAKLWDVRSGQCVQT------------------FEG-HES 230 (343)
T ss_pred EecCCcccEEEEecCCCCCCeEEecccc-----------cceeeeeccCcceeEe------------------ecc-ccc
Confidence 7778888999999999 99976544433 2467888877544321 222 223
Q ss_pred CCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC---CceeEEeeecCCEEEEEEeCCC
Q 003886 445 SILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES---NFSWSLLTLDGDNIIAVSSSPV 510 (789)
Q Consensus 445 ~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~---~~~~~~~s~dg~~l~~~~ss~~ 510 (789)
.+..+.|-|+|. -+.+.++++..++|-+. ..+...+..... .+....||..|+.|++-+.+.+
T Consensus 231 DINsv~ffP~G~-afatGSDD~tcRlyDlR--aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~ 296 (343)
T KOG0286|consen 231 DINSVRFFPSGD-AFATGSDDATCRLYDLR--ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFT 296 (343)
T ss_pred ccceEEEccCCC-eeeecCCCceeEEEeec--CCcEEeeeccCcccCCceeEEEcccccEEEeeecCCc
Confidence 456788999997 44677778888888554 443333332222 3444678888877666555443
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.5e-05 Score=76.76 Aligned_cols=54 Identities=4% Similarity=-0.157 Sum_probs=34.8
Q ss_pred cCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeec
Q 003886 444 SSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLD 498 (789)
Q Consensus 444 ~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~d 498 (789)
.++.-++|++|+.++ .+.++.-...||.+|+..-++..+.-....+....+.|.
T Consensus 319 ~g~g~lafs~Ds~y~-aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~ 372 (447)
T KOG4497|consen 319 CGAGKLAFSCDSTYA-ATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPG 372 (447)
T ss_pred cccceeeecCCceEE-eeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCC
Confidence 356678999998644 555566678899999977776655444333333344443
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.8e-05 Score=77.64 Aligned_cols=159 Identities=17% Similarity=0.139 Sum_probs=105.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
..+.+.+.+|+.+.++.-... .+--+|..+.......++ +...+| ....||.||..||..-
T Consensus 65 ~svFavsl~P~~~l~aTGGgD-----D~AflW~~~~ge~~~elt-gHKDSV------t~~~FshdgtlLATGd------- 125 (399)
T KOG0296|consen 65 DSVFAVSLHPNNNLVATGGGD-----DLAFLWDISTGEFAGELT-GHKDSV------TCCSFSHDGTLLATGD------- 125 (399)
T ss_pred CceEEEEeCCCCceEEecCCC-----ceEEEEEccCCcceeEec-CCCCce------EEEEEccCceEEEecC-------
Confidence 458899999976666643222 244555322222333332 222333 7899999999988742
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCccE
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~ 312 (789)
-...|.++...+|..+.. +... ....-+.|.|-+..
T Consensus 126 -------------------------------------msG~v~v~~~stg~~~~~--~~~e~~dieWl~WHp~a~i---- 162 (399)
T KOG0296|consen 126 -------------------------------------MSGKVLVFKVSTGGEQWK--LDQEVEDIEWLKWHPRAHI---- 162 (399)
T ss_pred -------------------------------------CCccEEEEEcccCceEEE--eecccCceEEEEecccccE----
Confidence 235688889888877655 3322 24456789997764
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
|++.+ ..+.||.+.++ ..+..+.+..+...+..=.|.||||+|+....+
T Consensus 163 llAG~---------------~DGsvWmw~ip----------------~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 163 LLAGS---------------TDGSVWMWQIP----------------SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred EEeec---------------CCCcEEEEECC----------------CcceeeEecCCCCCcccccccCCCceEEEEecC
Confidence 44433 33478888884 336667777777788888999999999877754
Q ss_pred CCCCCCCccccceeEEeecCCCCC
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
. .|.+||+.++..
T Consensus 212 g-----------ti~~Wn~ktg~p 224 (399)
T KOG0296|consen 212 G-----------TIIVWNPKTGQP 224 (399)
T ss_pred c-----------eEEEEecCCCce
Confidence 3 599999988765
|
|
| >COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6e-06 Score=84.41 Aligned_cols=100 Identities=25% Similarity=0.395 Sum_probs=66.2
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHH---CCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSS---VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~---~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (789)
.|.|+++||.+.. ...|......+.. . |.++.+|.|| +|.+. .. ........+.+..+.+. .
T Consensus 21 ~~~i~~~hg~~~~--~~~~~~~~~~~~~~~~~-~~~~~~d~~g---~g~s~-~~------~~~~~~~~~~~~~~~~~--~ 85 (282)
T COG0596 21 GPPLVLLHGFPGS--SSVWRPVFKVLPALAAR-YRVIAPDLRG---HGRSD-PA------GYSLSAYADDLAALLDA--L 85 (282)
T ss_pred CCeEEEeCCCCCc--hhhhHHHHHHhhccccc-eEEEEecccC---CCCCC-cc------cccHHHHHHHHHHHHHH--h
Confidence 4589999998775 3334332222322 3 9999999997 44443 00 11122223444444443 2
Q ss_pred CCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
...++.++|||+||.++..++.++|++++++|+.++..
T Consensus 86 ~~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~ 123 (282)
T COG0596 86 GLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAP 123 (282)
T ss_pred CCCceEEEEecccHHHHHHHHHhcchhhheeeEecCCC
Confidence 33449999999999999999999999999999998654
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.6e-07 Score=87.86 Aligned_cols=140 Identities=18% Similarity=0.227 Sum_probs=89.0
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEecCC--ceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCc
Q 003886 159 VVPSPSGSKLLVVRNPENESPIQFELWSQS--QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 236 (789)
Q Consensus 159 ~~~SPdG~~la~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 236 (789)
-.|||+|++||..++-. .+|.+.. +..+++.+-..+ ..+.|+.|.-+|..++..
T Consensus 14 c~fSp~g~yiAs~~~yr------lviRd~~tlq~~qlf~cldki----------~yieW~ads~~ilC~~yk-------- 69 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYR------LVIRDSETLQLHQLFLCLDKI----------VYIEWKADSCHILCVAYK-------- 69 (447)
T ss_pred eeECCCCCeeeeeeeeE------EEEeccchhhHHHHHHHHHHh----------hheeeeccceeeeeeeec--------
Confidence 36999999999875531 2232221 222222222222 578899999999887543
Q ss_pred cCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEE
Q 003886 237 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFV 316 (789)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~ 316 (789)
++.+++|++..-+...-. -.+........|||||+. |.-+
T Consensus 70 -----------------------------------~~~vqvwsl~Qpew~ckI-deg~agls~~~WSPdgrh----iL~t 109 (447)
T KOG4497|consen 70 -----------------------------------DPKVQVWSLVQPEWYCKI-DEGQAGLSSISWSPDGRH----ILLT 109 (447)
T ss_pred -----------------------------------cceEEEEEeecceeEEEe-ccCCCcceeeeECCCcce----Eeee
Confidence 367889998766654321 234456778999999999 8877
Q ss_pred eecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 317 GWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 317 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
+. ....|-++.+ .+.....|..........+|.|||++-+..+.++
T Consensus 110 se--------------F~lriTVWSL-----------------~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 110 SE--------------FDLRITVWSL-----------------NTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred ec--------------ceeEEEEEEe-----------------ccceeEEecccccCceeEEECCCCceeeeeeccc
Confidence 62 1123444444 3444444444444457789999999998888764
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.4e-05 Score=86.71 Aligned_cols=174 Identities=16% Similarity=0.136 Sum_probs=113.6
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
+..+.++....++...+. ..-......++++-+|+. +++.+. +..|-+++..
T Consensus 75 ~~tv~~y~fps~~~~~iL-~Rftlp~r~~~v~g~g~~----iaagsd---------------D~~vK~~~~~-------- 126 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTIL-ARFTLPIRDLAVSGSGKM----IAAGSD---------------DTAVKLLNLD-------- 126 (933)
T ss_pred cceEEEeeCCCCCcccee-eeeeccceEEEEecCCcE----EEeecC---------------ceeEEEEecc--------
Confidence 466777887777665331 334557788999999999 998873 2357777773
Q ss_pred hhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeee
Q 003886 352 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 431 (789)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~ 431 (789)
+....+.+..+.+.+....|+|.|+.||..+-++ .+++||++.+.......+.. +
T Consensus 127 --------D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG-----------~v~iw~~~~~~~~~tl~~v~---k--- 181 (933)
T KOG1274|consen 127 --------DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDG-----------KVQIWDLQDGILSKTLTGVD---K--- 181 (933)
T ss_pred --------ccchheeecccCCceeeeeEcCCCCEEEEEecCc-----------eEEEEEcccchhhhhcccCC---c---
Confidence 5566778888888999999999999999887553 59999998765532211111 0
Q ss_pred ccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC---CCceeEEeeecCCEEEEEE
Q 003886 432 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE---SNFSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~---~~~~~~~~s~dg~~l~~~~ 506 (789)
+.+|. -......++|+|+|.++++...+ +. +..++.++.+........ ..++..+|+|.|.+|+...
T Consensus 182 ---~n~~~--~s~i~~~~aW~Pk~g~la~~~~d-~~--Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~ 251 (933)
T KOG1274|consen 182 ---DNEFI--LSRICTRLAWHPKGGTLAVPPVD-NT--VKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAST 251 (933)
T ss_pred ---ccccc--ccceeeeeeecCCCCeEEeeccC-Ce--EEEEccCCceeheeecccccccceEEEEEcCCCcEEeeec
Confidence 01111 01223578999998888776543 23 344455566554332221 2366778999998877653
|
|
| >PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.1e-06 Score=79.73 Aligned_cols=139 Identities=19% Similarity=0.282 Sum_probs=83.2
Q ss_pred EEEEcCCCCCCCchhhHHHH-HHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccE
Q 003886 595 IVVLHGGPHSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 673 (789)
Q Consensus 595 vv~~HGg~~~~~~~~~~~~~-~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv 673 (789)
|+++||..++.. ..|.... +.|... +.|-.+|.- ..+.++..+.++..+.. +| +.+
T Consensus 1 v~IvhG~~~s~~-~HW~~wl~~~l~~~-~~V~~~~~~------------------~P~~~~W~~~l~~~i~~--~~-~~~ 57 (171)
T PF06821_consen 1 VLIVHGYGGSPP-DHWQPWLERQLENS-VRVEQPDWD------------------NPDLDEWVQALDQAIDA--ID-EPT 57 (171)
T ss_dssp EEEE--TTSSTT-TSTHHHHHHHHTTS-EEEEEC--T------------------S--HHHHHHHHHHCCHC---T-TTE
T ss_pred CEEeCCCCCCCc-cHHHHHHHHhCCCC-eEEeccccC------------------CCCHHHHHHHHHHHHhh--cC-CCe
Confidence 678999766543 4555444 456555 677766641 22355555655554443 33 459
Q ss_pred EEEEcCccHHHHHHHH-HhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCcc
Q 003886 674 TVVGGSHGGFLTTHLI-GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI 752 (789)
Q Consensus 674 ~l~G~S~GG~~a~~~~-~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 752 (789)
.++|||+|+..+++++ .+...+++++++++|....... .. .+. ...+ .+.
T Consensus 58 ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~-~~--~~~-----------~~~f---------------~~~ 108 (171)
T PF06821_consen 58 ILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPE-PF--PPE-----------LDGF---------------TPL 108 (171)
T ss_dssp EEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHH-CC--TCG-----------GCCC---------------TTS
T ss_pred EEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCccccc-ch--hhh-----------cccc---------------ccC
Confidence 9999999999999999 7677899999999997531000 00 000 0000 001
Q ss_pred ccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 753 SHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 753 ~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
....+..|.+++.+++|+.||++.+.++.+.+.
T Consensus 109 -p~~~l~~~~~viaS~nDp~vp~~~a~~~A~~l~ 141 (171)
T PF06821_consen 109 -PRDPLPFPSIVIASDNDPYVPFERAQRLAQRLG 141 (171)
T ss_dssp -HCCHHHCCEEEEEETTBSSS-HHHHHHHHHHHT
T ss_pred -cccccCCCeEEEEcCCCCccCHHHHHHHHHHcC
Confidence 112334566999999999999999999998874
|
The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00021 Score=76.05 Aligned_cols=299 Identities=13% Similarity=0.106 Sum_probs=159.8
Q ss_pred EecCCCCCceEE-EEEeec-hhhcccceeEEEEEEeecCCCCccceee--cCCcceecccEEEEeCCCCCeEEEEecCCC
Q 003886 101 FNSGNGNGTQAM-FSISQP-NLLANKRKKFMLSTVISKENENSVTFQW--APFPVEMTGASAVVPSPSGSKLLVVRNPEN 176 (789)
Q Consensus 101 ~~~~spdg~~v~-~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~lt~--~~~~~~~~~~~~~~~SPdG~~la~~~~~~~ 176 (789)
+-..||.-++++ |+..-. .-..+.....|.++++.++ ...+-+.. ++. .-=....||-|++++|=+..+.
T Consensus 254 ~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG-~lkrsF~~~~~~~----~~WP~frWS~DdKy~Arm~~~s- 327 (698)
T KOG2314|consen 254 FIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG-LLKRSFPVIKSPY----LKWPIFRWSHDDKYFARMTGNS- 327 (698)
T ss_pred eeecCCccceEEEecCCccccCcccCCCceEEEEEcccc-chhcceeccCCCc----cccceEEeccCCceeEEeccce-
Confidence 344567777663 332211 1111234457888888443 21121111 111 1122467999999998654422
Q ss_pred CCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCc
Q 003886 177 ESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ 256 (789)
Q Consensus 177 ~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (789)
+.|...-. -.+++...-.-.. +.+++|||-+..|||-......
T Consensus 328 -----isIyEtps-f~lld~Kslki~g------Ir~FswsP~~~llAYwtpe~~~------------------------- 370 (698)
T KOG2314|consen 328 -----ISIYETPS-FMLLDKKSLKISG------IRDFSWSPTSNLLAYWTPETNN------------------------- 370 (698)
T ss_pred -----EEEEecCc-eeeecccccCCcc------ccCcccCCCcceEEEEcccccC-------------------------
Confidence 23332211 2222221111011 1689999999999997554321
Q ss_pred ceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCcee-eeeeeeccCCc
Q 003886 257 GDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK-LGIKYCYNRPC 335 (789)
Q Consensus 257 ~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~-~g~~~~~~~~~ 335 (789)
....+-++.+.++...+.. ---+..--...|-..|+. |.|-..+....+ .|..+ +-
T Consensus 371 --------------~parvtL~evPs~~~iRt~-nlfnVsDckLhWQk~gdy----LcvkvdR~tK~~~~g~f~----n~ 427 (698)
T KOG2314|consen 371 --------------IPARVTLMEVPSKREIRTK-NLFNVSDCKLHWQKSGDY----LCVKVDRHTKSKVKGQFS----NL 427 (698)
T ss_pred --------------CcceEEEEecCccceeeec-cceeeeccEEEeccCCcE----EEEEEEeeccccccceEe----eE
Confidence 1133455565555433321 011233446789999998 988776665433 22221 23
Q ss_pred ceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCC
Q 003886 336 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 336 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
.|++++= ..-.+..+ +-...+...+|-|.|.+++.++.... ...+-.|..++..
T Consensus 428 eIfrire-----------------KdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~--------k~tvsfY~~e~~~ 481 (698)
T KOG2314|consen 428 EIFRIRE-----------------KDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTV--------KNTVSFYAVETNI 481 (698)
T ss_pred EEEEeec-----------------cCCCceee-ecchheeeeeeccCCCeEEEEEcccc--------ccceeEEEeecCC
Confidence 5676652 22222222 12334678899999999999987652 2334444444322
Q ss_pred CC-CcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC-CCCceeE
Q 003886 416 NF-SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-ESNFSWS 493 (789)
Q Consensus 416 ~~-~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~-~~~~~~~ 493 (789)
.+ .+....+. .....+.|||.|+.+++.+-......|+-+|++-...+++... +...+..
T Consensus 482 ~~~~lVk~~dk------------------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~v 543 (698)
T KOG2314|consen 482 KKPSLVKELDK------------------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEV 543 (698)
T ss_pred Cchhhhhhhcc------------------cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccc
Confidence 11 11111110 0123568999999888877666667788888764455444322 2234556
Q ss_pred EeeecCCEEEEEEeCC
Q 003886 494 LLTLDGDNIIAVSSSP 509 (789)
Q Consensus 494 ~~s~dg~~l~~~~ss~ 509 (789)
.|.|.|++++...+..
T Consensus 544 eWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 544 EWDPTGRYVVTSSSSW 559 (698)
T ss_pred eECCCCCEEEEeeehh
Confidence 8899999988777665
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.3e-06 Score=85.39 Aligned_cols=242 Identities=10% Similarity=0.058 Sum_probs=148.6
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
..+....||++|.+++-...+ ..+.+|. .-+..+.+.- .| ++.+.+++|||...+++..+++...+
T Consensus 139 s~Vr~m~ws~~g~wmiSgD~g-----G~iKyWqpnmnnVk~~~a---hh-----~eaIRdlafSpnDskF~t~SdDg~ik 205 (464)
T KOG0284|consen 139 SPVRTMKWSHNGTWMISGDKG-----GMIKYWQPNMNNVKIIQA---HH-----AEAIRDLAFSPNDSKFLTCSDDGTIK 205 (464)
T ss_pred ccceeEEEccCCCEEEEcCCC-----ceEEecccchhhhHHhhH---hh-----hhhhheeccCCCCceeEEecCCCeEE
Confidence 348889999999999754333 3677783 2222333221 11 12338999999888788777776554
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (789)
.|+-...++......+.--+....|.|.-|...++.+++-+.+||..+|....-. ......+-.+.|+|+|.+
T Consensus 206 --iWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl-h~HKntVl~~~f~~n~N~---- 278 (464)
T KOG0284|consen 206 --IWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL-HGHKNTVLAVKFNPNGNW---- 278 (464)
T ss_pred --EEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh-hhccceEEEEEEcCCCCe----
Confidence 3432222232333333333335667777788888888889999999988654321 222346779999999988
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
|+-.+ +++.+.++|+. .-.++.....+...+....|+|=-.-|+.+..-
T Consensus 279 Llt~s---------------kD~~~kv~DiR----------------~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~ 327 (464)
T KOG0284|consen 279 LLTGS---------------KDQSCKVFDIR----------------TMKELFTYRGHKKDVTSLTWHPLNESLFTSGGS 327 (464)
T ss_pred eEEcc---------------CCceEEEEehh----------------HhHHHHHhhcchhhheeeccccccccceeeccC
Confidence 77766 44567788872 234455555566678889999987766544422
Q ss_pred CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (789)
..+|..+.+...+........ .+..+-++.|.|=|. |+.+++.+.....|.
T Consensus 328 ----------Dgsvvh~~v~~~~p~~~i~~A------------------Hd~~iwsl~~hPlGh-il~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 328 ----------DGSVVHWVVGLEEPLGEIPPA------------------HDGEIWSLAYHPLGH-ILATGSNDRTVRFWT 378 (464)
T ss_pred ----------CCceEEEeccccccccCCCcc------------------cccceeeeeccccce-eEeecCCCcceeeec
Confidence 235766766532322111110 112355778999986 767776666666665
Q ss_pred EEC
Q 003886 473 VNV 475 (789)
Q Consensus 473 ~dl 475 (789)
-+.
T Consensus 379 r~r 381 (464)
T KOG0284|consen 379 RNR 381 (464)
T ss_pred cCC
Confidence 443
|
|
| >PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.9e-06 Score=78.63 Aligned_cols=206 Identities=13% Similarity=0.117 Sum_probs=106.4
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
.-.+|..+..|--.|++. ..+++|+||+..|.+. ....|...+.+|+..||.|+-+|..-..| .+... +....-
T Consensus 8 ~~~~~~~I~vwet~P~~~-~~~~~~tiliA~Gf~r--rmdh~agLA~YL~~NGFhViRyDsl~HvG--lSsG~-I~eftm 81 (294)
T PF02273_consen 8 RLEDGRQIRVWETRPKNN-EPKRNNTILIAPGFAR--RMDHFAGLAEYLSANGFHVIRYDSLNHVG--LSSGD-INEFTM 81 (294)
T ss_dssp EETTTEEEEEEEE---TT-S---S-EEEEE-TT-G--GGGGGHHHHHHHHTTT--EEEE---B----------------H
T ss_pred EcCCCCEEEEeccCCCCC-CcccCCeEEEecchhH--HHHHHHHHHHHHhhCCeEEEecccccccc--CCCCC-hhhcch
Confidence 345789999999999853 4567799999988444 45677788899999999999999753222 21110 111111
Q ss_pred cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchh--hhhc
Q 003886 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY--VESY 726 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~--~~~~ 726 (789)
....+++..+++|+.++| ..+++++..|.-|-+|...+++ . ...-+|...||.++..-....-..++.- .+.+
T Consensus 82 s~g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~-i-~lsfLitaVGVVnlr~TLe~al~~Dyl~~~i~~l 156 (294)
T PF02273_consen 82 SIGKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAAD-I-NLSFLITAVGVVNLRDTLEKALGYDYLQLPIEQL 156 (294)
T ss_dssp HHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTT-S---SEEEEES--S-HHHHHHHHHSS-GGGS-GGG-
T ss_pred HHhHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhc-c-CcceEEEEeeeeeHHHHHHHHhccchhhcchhhC
Confidence 122578999999999775 5679999999999999999985 4 3677777789998854321100000000 0000
Q ss_pred cCccccccCCCCC--hhhHHHHH--hcC----ccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 727 GSKGKDSFTESPS--VEDLTRFH--SKS----PISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 727 ~~~~~~~~~~~~~--~~~~~~~~--~~s----p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.. .. .+.+... ........ .+. ....++.+.+|++.+++++|..|......++.+.+..
T Consensus 157 p~-dl-dfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s 223 (294)
T PF02273_consen 157 PE-DL-DFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVKQSEVEELLDNINS 223 (294)
T ss_dssp -S-EE-EETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS-HHHHHHHHTT-TT
T ss_pred CC-cc-cccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCccccHHHHHHHHHhcCC
Confidence 00 00 0000000 00111111 122 2345788899999999999999999999999876643
|
Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B. |
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00016 Score=70.28 Aligned_cols=177 Identities=13% Similarity=0.108 Sum_probs=109.4
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
.+..+.+||+++|+.... ..-...+..+.|+++|.. ++++.... .| ..+.|...|++..++
T Consensus 72 AD~t~kLWDv~tGk~la~--~k~~~~Vk~~~F~~~gn~----~l~~tD~~----mg------~~~~v~~fdi~~~~~--- 132 (327)
T KOG0643|consen 72 ADQTAKLWDVETGKQLAT--WKTNSPVKRVDFSFGGNL----ILASTDKQ----MG------YTCFVSVFDIRDDSS--- 132 (327)
T ss_pred ccceeEEEEcCCCcEEEE--eecCCeeEEEeeccCCcE----EEEEehhh----cC------cceEEEEEEccCChh---
Confidence 446788999999998777 566677889999999998 88877422 11 345677777742111
Q ss_pred hhhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEee
Q 003886 351 ELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (789)
Q Consensus 351 ~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~ 429 (789)
...+.+ ...+......+...-|+|-|+.|+....+. .|-.||..+|....-....
T Consensus 133 -------~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G-----------~is~~da~~g~~~v~s~~~------ 188 (327)
T KOG0643|consen 133 -------DIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDG-----------SISIYDARTGKELVDSDEE------ 188 (327)
T ss_pred -------hhcccCceEEecCCccceeeeeecccCCEEEEecCCC-----------cEEEEEcccCceeeechhh------
Confidence 002233 455555556788899999999987655442 5889998876542111110
Q ss_pred eeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEE
Q 003886 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAV 505 (789)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~ 505 (789)
....+..+++++|.. .+++++.+....|+-+. +=++.+-..........+++|--+.++..
T Consensus 189 ------------h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~--tl~v~Kty~te~PvN~aaisP~~d~Vilg 249 (327)
T KOG0643|consen 189 ------------HSSKINDLQFSRDRT-YFITGSKDTTAKLVDVR--TLEVLKTYTTERPVNTAAISPLLDHVILG 249 (327)
T ss_pred ------------hccccccccccCCcc-eEEecccCccceeeecc--ceeeEEEeeecccccceecccccceEEec
Confidence 113467889999976 55677767666666443 43333222222223445666655554443
|
|
| >KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.6e-06 Score=86.06 Aligned_cols=114 Identities=22% Similarity=0.237 Sum_probs=77.0
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCC-------------C-chhhcc-----------
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGF-------------G-EEALQS----------- 642 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~-------------G-~~~~~~----------- 642 (789)
++.|+|+|||-||-+++ ..-|+..+.-||++||+|.+++.|-..-. + +.+..-
T Consensus 114 k~~k~PvvvFSHGLggs--Rt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~ 191 (399)
T KOG3847|consen 114 KNDKYPVVVFSHGLGGS--RTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFH 191 (399)
T ss_pred CCCCccEEEEecccccc--hhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEE
Confidence 47899999999996553 55677788899999999999999853111 0 000000
Q ss_pred CCCCCCcccHHHHHHHHHHHHH---------------------cCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEE
Q 003886 643 LPGKVGSQDVNDVLTAIDHVID---------------------MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 701 (789)
Q Consensus 643 ~~~~~~~~~~~D~~~~i~~l~~---------------------~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~ 701 (789)
++...-.+.+.++..|++-+.+ ++.+|..++.|+|||+||..++...+.+. .|+|+|+
T Consensus 192 irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t-~FrcaI~ 270 (399)
T KOG3847|consen 192 IRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSHT-DFRCAIA 270 (399)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhcccc-ceeeeee
Confidence 0000001124566666664432 13377889999999999999998888654 6999988
Q ss_pred eCC
Q 003886 702 RNP 704 (789)
Q Consensus 702 ~~p 704 (789)
..+
T Consensus 271 lD~ 273 (399)
T KOG3847|consen 271 LDA 273 (399)
T ss_pred eee
Confidence 765
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00014 Score=70.81 Aligned_cols=145 Identities=17% Similarity=0.234 Sum_probs=90.1
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC---eeecCCCCC
Q 003886 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESIS 372 (789)
Q Consensus 296 ~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~Lt~~~~ 372 (789)
.+.+++|||.|+. |+..+.+. .+.++.- ..++ ...|..+..
T Consensus 63 sVRsvAwsp~g~~----La~aSFD~---------------t~~Iw~k-----------------~~~efecv~~lEGHEn 106 (312)
T KOG0645|consen 63 SVRSVAWSPHGRY----LASASFDA---------------TVVIWKK-----------------EDGEFECVATLEGHEN 106 (312)
T ss_pred eeeeeeecCCCcE----EEEeeccc---------------eEEEeec-----------------CCCceeEEeeeecccc
Confidence 6789999999998 88877432 2222221 1222 345666677
Q ss_pred ccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccc
Q 003886 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 452 (789)
Q Consensus 373 ~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws 452 (789)
.+-..+||++|.+||..+.+. ++|+|....++.. +...+.+. +...+-.+.|.
T Consensus 107 EVK~Vaws~sG~~LATCSRDK-----------SVWiWe~deddEf-------ec~aVL~~---------HtqDVK~V~WH 159 (312)
T KOG0645|consen 107 EVKCVAWSASGNYLATCSRDK-----------SVWIWEIDEDDEF-------ECIAVLQE---------HTQDVKHVIWH 159 (312)
T ss_pred ceeEEEEcCCCCEEEEeeCCC-----------eEEEEEecCCCcE-------EEEeeecc---------ccccccEEEEc
Confidence 788999999999999998665 5888887654432 22222221 11124467899
Q ss_pred cCCCEEEEEEEeCCeEEEEEEECCCCcE--E-EecCCCCCceeEEeeecCCEEEEE
Q 003886 453 SDGCTMLLSSIWGSSQVIISVNVSSGEL--L-RITPAESNFSWSLLTLDGDNIIAV 505 (789)
Q Consensus 453 ~Dg~~l~~~~~~~~~~~l~~~dl~tg~~--~-~lt~~~~~~~~~~~s~dg~~l~~~ 505 (789)
|--. |+|+.+.+....+|+-+. .+.. . .|......+-...|.+.|.+|+..
T Consensus 160 Pt~d-lL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~ 213 (312)
T KOG0645|consen 160 PTED-LLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSC 213 (312)
T ss_pred CCcc-eeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEe
Confidence 8654 779988888999998764 3332 2 232222223334667777666543
|
|
| >TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.4e-06 Score=94.94 Aligned_cols=96 Identities=19% Similarity=0.201 Sum_probs=66.7
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhc-c-------CCCC--------------CC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ-S-------LPGK--------------VG 648 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~-~-------~~~~--------------~~ 648 (789)
..|+||++||..+. ...|......|+++||.|+++|+|| ||++... . .... --
T Consensus 448 g~P~VVllHG~~g~--~~~~~~lA~~La~~Gy~VIaiDlpG---HG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~ 522 (792)
T TIGR03502 448 GWPVVIYQHGITGA--KENALAFAGTLAAAGVATIAIDHPL---HGARSFDANASGVNATNANVLAYMNLASLLVARDNL 522 (792)
T ss_pred CCcEEEEeCCCCCC--HHHHHHHHHHHHhCCcEEEEeCCCC---CCccccccccccccccccCccceeccccccccccCH
Confidence 46899999996553 5577778889999999999999998 4444111 0 0000 11
Q ss_pred cccHHHHHHHHHHHH------Hc----CCCCCccEEEEEcCccHHHHHHHHHh
Q 003886 649 SQDVNDVLTAIDHVI------DM----GLANPSKVTVVGGSHGGFLTTHLIGQ 691 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~------~~----~~~d~~rv~l~G~S~GG~~a~~~~~~ 691 (789)
.+.+.|+......+. +. ...+..+|.++||||||+++..++..
T Consensus 523 rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 523 RQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 223567666666655 11 12567899999999999999998875
|
Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae |
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00011 Score=88.68 Aligned_cols=209 Identities=14% Similarity=0.110 Sum_probs=115.4
Q ss_pred cccEEEEeCC-CCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceee-cCCCCEEEEEeecC
Q 003886 154 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISW-NSDETLIAYVAEEP 229 (789)
Q Consensus 154 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~w-SpDg~~la~~~~~~ 229 (789)
..+...+|+| +|..|+..+..+ .+.+|+ .+.....+... ..+ ..+.| +++|+.|+..+.
T Consensus 576 ~~V~~l~~~p~~~~~L~Sgs~Dg-----~v~iWd~~~~~~~~~~~~~----~~v------~~v~~~~~~g~~latgs~-- 638 (793)
T PLN00181 576 KRVWSIDYSSADPTLLASGSDDG-----SVKLWSINQGVSIGTIKTK----ANI------CCVQFPSESGRSLAFGSA-- 638 (793)
T ss_pred CCEEEEEEcCCCCCEEEEEcCCC-----EEEEEECCCCcEEEEEecC----CCe------EEEEEeCCCCCEEEEEeC--
Confidence 4588899997 788877765443 566773 33333333221 122 57788 457888887643
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCce--EeccCCCCCCccceEEEeeCCC
Q 003886 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNE 307 (789)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~--~~l~~~~~~~~~~~~~wSPDg~ 307 (789)
+..|++||+..++. ..+ ......+..+.|+ |+.
T Consensus 639 ------------------------------------------dg~I~iwD~~~~~~~~~~~--~~h~~~V~~v~f~-~~~ 673 (793)
T PLN00181 639 ------------------------------------------DHKVYYYDLRNPKLPLCTM--IGHSKTVSYVRFV-DSS 673 (793)
T ss_pred ------------------------------------------CCeEEEEECCCCCccceEe--cCCCCCEEEEEEe-CCC
Confidence 25788999876542 233 2223356788886 676
Q ss_pred CCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEE
Q 003886 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 308 ~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la 387 (789)
. |+..+. +..|.++|+.... ..........+..+........|+|+|++|+
T Consensus 674 ~----lvs~s~---------------D~~ikiWd~~~~~----------~~~~~~~l~~~~gh~~~i~~v~~s~~~~~la 724 (793)
T PLN00181 674 T----LVSSST---------------DNTLKLWDLSMSI----------SGINETPLHSFMGHTNVKNFVGLSVSDGYIA 724 (793)
T ss_pred E----EEEEEC---------------CCEEEEEeCCCCc----------cccCCcceEEEcCCCCCeeEEEEcCCCCEEE
Confidence 6 665552 2256667762100 0001233456666665667789999999888
Q ss_pred EEecCCCCCCCCccccceeEEeecCCCCCCCc-ccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCC
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS-LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~-t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (789)
..+.+. .+++|+......... .....+... ..... . ....+..++|+++|..| +++..+|
T Consensus 725 sgs~D~-----------~v~iw~~~~~~~~~s~~~~~~~~~~--~~~~~-~----~~~~V~~v~ws~~~~~l-va~~~dG 785 (793)
T PLN00181 725 TGSETN-----------EVFVYHKAFPMPVLSYKFKTIDPVS--GLEVD-D----ASQFISSVCWRGQSSTL-VAANSTG 785 (793)
T ss_pred EEeCCC-----------EEEEEECCCCCceEEEecccCCccc--ccccC-C----CCcEEEEEEEcCCCCeE-EEecCCC
Confidence 777543 588888654321100 000000000 00000 0 00124577899999855 5666667
Q ss_pred eEEEEE
Q 003886 467 SQVIIS 472 (789)
Q Consensus 467 ~~~l~~ 472 (789)
...||.
T Consensus 786 ~I~i~~ 791 (793)
T PLN00181 786 NIKILE 791 (793)
T ss_pred cEEEEe
Confidence 666664
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.4e-05 Score=77.61 Aligned_cols=163 Identities=18% Similarity=0.235 Sum_probs=92.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCce--------------eEEEe-cCCCccccccCCCcccceeecCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL--------------EKEFH-VPQTVHGSVYADGWFEGISWNSD 218 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~--------------~~~~~-~~~~~~g~v~~d~~~~~~~wSpD 218 (789)
..+....|||+|..||-..+.+ ...+|..+.. ..+.. ...+ | .+....+.|+||
T Consensus 66 ~aVN~vRf~p~gelLASg~D~g-----~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h-----~~diydL~Ws~d 134 (434)
T KOG1009|consen 66 RAVNVVRFSPDGELLASGGDGG-----EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG-H-----RDDIYDLAWSPD 134 (434)
T ss_pred ceeEEEEEcCCcCeeeecCCCc-----eEEEEEecCcCCccccchhhhCccceEEEEEecc-c-----ccchhhhhccCC
Confidence 3477889999999999765543 4556632210 00110 0011 1 122368899999
Q ss_pred CCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccc
Q 003886 219 ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVG 298 (789)
Q Consensus 219 g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~ 298 (789)
+..+++.+.+ +.++.||+..|.+.... -.....+.
T Consensus 135 ~~~l~s~s~d--------------------------------------------ns~~l~Dv~~G~l~~~~-~dh~~yvq 169 (434)
T KOG1009|consen 135 SNFLVSGSVD--------------------------------------------NSVRLWDVHAGQLLAIL-DDHEHYVQ 169 (434)
T ss_pred Cceeeeeecc--------------------------------------------ceEEEEEeccceeEeec-cccccccc
Confidence 9999886543 67889999999887763 23345788
Q ss_pred eEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCC---CccC
Q 003886 299 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI---SSAF 375 (789)
Q Consensus 299 ~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~---~~~~ 375 (789)
.++|.|-++. |+-.+.....+..+. +-...++++... .++........+...+|..+. ....
T Consensus 170 gvawDpl~qy----v~s~s~dr~~~~~~~----~~~~~~~~~~~~-------~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 170 GVAWDPLNQY----VASKSSDRHPEGFSA----KLKQVIKRHGLD-------IMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred eeecchhhhh----hhhhccCcccceeee----eeeeeeeeeeee-------EeeecccCCCCcceeeeeecCchhhhhh
Confidence 9999999887 776553332221111 111123333210 011111111334445565442 2466
Q ss_pred cceecCCCCEEE
Q 003886 376 FPRFSPDGKFLV 387 (789)
Q Consensus 376 ~p~~SpDG~~la 387 (789)
.++|+|||..|+
T Consensus 235 RlsfTPdG~llv 246 (434)
T KOG1009|consen 235 RLSFTPDGSLLV 246 (434)
T ss_pred hcccCCCCcEEE
Confidence 789999999766
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0001 Score=73.17 Aligned_cols=180 Identities=14% Similarity=0.095 Sum_probs=97.5
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
..|.+|++.+.-...+. .........+.||||+. |+..+...+ +.++.+-.+.. ++-
T Consensus 209 t~i~lw~lkGq~L~~id--tnq~~n~~aavSP~GRF----ia~~gFTpD---------------VkVwE~~f~kd--G~f 265 (420)
T KOG2096|consen 209 TKICLWDLKGQLLQSID--TNQSSNYDAAVSPDGRF----IAVSGFTPD---------------VKVWEPIFTKD--GTF 265 (420)
T ss_pred CcEEEEecCCceeeeec--cccccccceeeCCCCcE----EEEecCCCC---------------ceEEEEEeccC--cch
Confidence 67899999854444441 22335567889999998 888875444 22222211100 000
Q ss_pred hhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC--C-CCCCcccceeeEEee
Q 003886 353 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT--N-GNFSSLEKIVDVIPV 429 (789)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~--~-~~~~~t~~~~~v~~~ 429 (789)
.+-..+-.|..+...+...+||++..+++..+.+. ..+||-.|+.= + ..+.+-.+
T Consensus 266 ------qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG---------~wriwdtdVrY~~~qDpk~Lk~g------- 323 (420)
T KOG2096|consen 266 ------QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDG---------KWRIWDTDVRYEAGQDPKILKEG------- 323 (420)
T ss_pred ------hhhhhhheeccchhheeeeeeCCCcceeEEEecCC---------cEEEeeccceEecCCCchHhhcC-------
Confidence 01223446677777899999999999999888664 22343333211 1 11111000
Q ss_pred eeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecC-CC-CCceeEEeeecCCEEEEEEe
Q 003886 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP-AE-SNFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~-~~-~~~~~~~~s~dg~~l~~~~s 507 (789)
..+. +-.| ....++..+|.|+.|.++. +. .|-.+...+|+...-.. .. +.++...|+++|++++....
T Consensus 324 -~~pl--~aag---~~p~RL~lsP~g~~lA~s~--gs--~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 324 -SAPL--HAAG---SEPVRLELSPSGDSLAVSF--GS--DLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred -Ccch--hhcC---CCceEEEeCCCCcEEEeec--CC--ceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence 0000 0000 1233677899999665542 33 34444555666543322 22 25566789999998765543
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00015 Score=72.04 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=74.9
Q ss_pred cceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeec--C
Q 003886 335 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW--P 412 (789)
Q Consensus 335 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~--~ 412 (789)
..|.++++ .+.....+..........+.||||+.|+...-. .++.+|.. .
T Consensus 209 t~i~lw~l-----------------kGq~L~~idtnq~~n~~aavSP~GRFia~~gFT-----------pDVkVwE~~f~ 260 (420)
T KOG2096|consen 209 TKICLWDL-----------------KGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFT-----------PDVKVWEPIFT 260 (420)
T ss_pred CcEEEEec-----------------CCceeeeeccccccccceeeCCCCcEEEEecCC-----------CCceEEEEEec
Confidence 46888887 544444444444557788999999998865533 23555543 1
Q ss_pred CCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECC--CCcEE--------E
Q 003886 413 TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS--SGELL--------R 482 (789)
Q Consensus 413 ~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~--tg~~~--------~ 482 (789)
.++.. .++..++. ..| ....+..++||++++++ ++.+.+|..+||-.|+. -++-. .
T Consensus 261 kdG~f------qev~rvf~------LkG-H~saV~~~aFsn~S~r~-vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~p 326 (420)
T KOG2096|consen 261 KDGTF------QEVKRVFS------LKG-HQSAVLAAAFSNSSTRA-VTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAP 326 (420)
T ss_pred cCcch------hhhhhhhe------ecc-chhheeeeeeCCCccee-EEEecCCcEEEeeccceEecCCCchHhhcCCcc
Confidence 21211 11222211 111 22346678999999877 56677888899987762 12211 1
Q ss_pred ecCCCCCceeEEeeecCCEEEEEEeC
Q 003886 483 ITPAESNFSWSLLTLDGDNIIAVSSS 508 (789)
Q Consensus 483 lt~~~~~~~~~~~s~dg~~l~~~~ss 508 (789)
+-...+......++|.|+.|+....+
T Consensus 327 l~aag~~p~RL~lsP~g~~lA~s~gs 352 (420)
T KOG2096|consen 327 LHAAGSEPVRLELSPSGDSLAVSFGS 352 (420)
T ss_pred hhhcCCCceEEEeCCCCcEEEeecCC
Confidence 11122233345788888877655543
|
|
| >KOG1516 consensus Carboxylesterase and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.9e-06 Score=99.36 Aligned_cols=130 Identities=24% Similarity=0.294 Sum_probs=89.5
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch-hh--HHHHHHHHHCCcEEEEEcCC-CCCCCCchhhccCCCC
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SY--SKSLAFLSSVGYSLLIVNYR-GSLGFGEEALQSLPGK 646 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~--~~~~~~la~~Gy~V~~~d~r-Gs~G~G~~~~~~~~~~ 646 (789)
.|. |...++.|......+ .|++|++|||....... .+ ......+..+..+|+.++|| |.-|+........+++
T Consensus 94 EDC--LylNV~tp~~~~~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~gN 170 (545)
T KOG1516|consen 94 EDC--LYLNVYTPQGCSESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPGN 170 (545)
T ss_pred CCC--ceEEEeccCCCccCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCCc
Confidence 355 444578886432222 99999999987643332 22 12233455668999999999 7666654443333555
Q ss_pred CCcccHHHHHHHHHHHHHc---CCCCCccEEEEEcCccHHHHHHHHHh--CCCceeEEEEeCCcc
Q 003886 647 VGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 706 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~~~~--~p~~~~a~v~~~pv~ 706 (789)
+| +.|+..+++|+.+. -.-|+++|.|+|||.||..+..++.. ...+|+.+|..++..
T Consensus 171 ~g---l~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 171 LG---LFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred cc---HHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 55 67999999999885 22599999999999999999877763 124788888877753
|
|
| >PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family | Back alignment and domain information |
|---|
Probab=98.21 E-value=3e-06 Score=84.37 Aligned_cols=153 Identities=17% Similarity=0.148 Sum_probs=73.3
Q ss_pred CCcEEEEEcCCCCCCCchhhHHH----HHHHHHCCcEEEEEcCCCC----CCCCch-------hhcc-CCCCCCc-----
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKS----LAFLSSVGYSLLIVNYRGS----LGFGEE-------ALQS-LPGKVGS----- 649 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~----~~~la~~Gy~V~~~d~rGs----~G~G~~-------~~~~-~~~~~~~----- 649 (789)
+++-|+.+||...+ ...|... ...|.+.++..+.+|-+-. .|.... .... ....|..
T Consensus 3 ~k~riLcLHG~~~n--a~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 80 (212)
T PF03959_consen 3 RKPRILCLHGYGQN--AEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDD 80 (212)
T ss_dssp ---EEEEE--TT----HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-S
T ss_pred CCceEEEeCCCCcC--HHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCc
Confidence 46789999996553 5555443 3344444799999986511 111100 1111 1112221
Q ss_pred ccHHHHHHHHHHHHH----cCCCCCccEEEEEcCccHHHHHHHHHhC--------CCceeEEEEeCCccchhhhhcCCCC
Q 003886 650 QDVNDVLTAIDHVID----MGLANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLCNLALMVGTTDI 717 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~----~~~~d~~rv~l~G~S~GG~~a~~~~~~~--------p~~~~a~v~~~pv~~~~~~~~~~~~ 717 (789)
....++.++++++.+ .+-+ .+|+|+|.||.+++.++... ...||.+|+.+++......
T Consensus 81 ~~~~~~~~sl~~l~~~i~~~GPf----dGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~------ 150 (212)
T PF03959_consen 81 HEYEGLDESLDYLRDYIEENGPF----DGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD------ 150 (212)
T ss_dssp GGG---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE-------
T ss_pred ccccCHHHHHHHHHHHHHhcCCe----EEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh------
Confidence 124455555555544 3323 59999999999999888532 1258999998886531100
Q ss_pred CcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 718 PDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
........+|++|+|.++|.+|..++++.+..|++.+.
T Consensus 151 -------------------------------~~~~~~~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~ 188 (212)
T PF03959_consen 151 -------------------------------YQELYDEPKISIPTLHVIGENDPVVPPERSEALAEMFD 188 (212)
T ss_dssp -------------------------------GTTTT--TT---EEEEEEETT-SSS-HHHHHHHHHHHH
T ss_pred -------------------------------hhhhhccccCCCCeEEEEeCCCCCcchHHHHHHHHhcc
Confidence 00001234678999999999999999999999887653
|
It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A. |
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00016 Score=81.38 Aligned_cols=154 Identities=15% Similarity=0.192 Sum_probs=99.5
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
+...+++-+|+++|+.++.. .+-.+. .++..++.+. ++.+.| ..++++|.|+.||.++-+
T Consensus 99 ~r~~~v~g~g~~iaagsdD~----~vK~~~~~D~s~~~~lr---gh~apV------l~l~~~p~~~fLAvss~d------ 159 (933)
T KOG1274|consen 99 IRDLAVSGSGKMIAAGSDDT----AVKLLNLDDSSQEKVLR---GHDAPV------LQLSYDPKGNFLAVSSCD------ 159 (933)
T ss_pred ceEEEEecCCcEEEeecCce----eEEEEeccccchheeec---ccCCce------eeeeEcCCCCEEEEEecC------
Confidence 56788999999999987654 244444 3333333333 222222 899999999999987543
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEe-ccCCCCC------CccceEEEeeCCC
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-VKGIPKS------LSVGQVVWAPLNE 307 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~-l~~~~~~------~~~~~~~wSPDg~ 307 (789)
..|.+||++++.+.. ++++... -.+..++|+|+|.
T Consensus 160 --------------------------------------G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g 201 (933)
T KOG1274|consen 160 --------------------------------------GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG 201 (933)
T ss_pred --------------------------------------ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCC
Confidence 578999999886533 2222222 2456899999988
Q ss_pred CCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe-eecCC-CCC-ccCcceecCCCC
Q 003886 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTE-SIS-SAFFPRFSPDGK 384 (789)
Q Consensus 308 ~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~-~~~-~~~~p~~SpDG~ 384 (789)
. +++..-++ .|..++. ++.+. -.|.. ... .....+|||.|+
T Consensus 202 ~----la~~~~d~---------------~Vkvy~r-----------------~~we~~f~Lr~~~~ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 202 T----LAVPPVDN---------------TVKVYSR-----------------KGWELQFKLRDKLSSSKFSDLQWSPNGK 245 (933)
T ss_pred e----EEeeccCC---------------eEEEEcc-----------------CCceeheeecccccccceEEEEEcCCCc
Confidence 8 88876332 3555554 22222 12221 111 256789999999
Q ss_pred EEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 385 ~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
+||-...+. +|.+||+++
T Consensus 246 YiAAs~~~g-----------~I~vWnv~t 263 (933)
T KOG1274|consen 246 YIAASTLDG-----------QILVWNVDT 263 (933)
T ss_pred EEeeeccCC-----------cEEEEeccc
Confidence 999777553 699999986
|
|
| >COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.2e-05 Score=75.98 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHc-CCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 652 VNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 652 ~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
.+.+..-+.-.+++ --++.+|.+|+|||+||.+++.++..+|+.|.+.++.+|..
T Consensus 117 ~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSl 172 (264)
T COG2819 117 REFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSL 172 (264)
T ss_pred HHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchh
Confidence 34555566666665 44899999999999999999999999999999999999965
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.2e-05 Score=86.31 Aligned_cols=93 Identities=11% Similarity=0.092 Sum_probs=63.0
Q ss_pred ccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCc-ccccCCccCceEEEEEccCCceEec
Q 003886 210 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW-GETYAGKRQPSLFVININSGEVQAV 288 (789)
Q Consensus 210 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-g~~~~~~~~~~l~v~d~~~g~~~~l 288 (789)
+.+++||.++ .|+-++.+++.+ .|....+... ..-.+..++....|.|-- ..-+.|.-+..|.+|++...++...
T Consensus 372 ILDlSWSKn~-fLLSSSMDKTVR--LWh~~~~~CL-~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W 447 (712)
T KOG0283|consen 372 ILDLSWSKNN-FLLSSSMDKTVR--LWHPGRKECL-KVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW 447 (712)
T ss_pred heecccccCC-eeEeccccccEE--eecCCCccee-eEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee
Confidence 3578999886 677888888765 4554332222 233566777777776642 2223455567899999988887766
Q ss_pred cCCCCCCccceEEEeeCCCC
Q 003886 289 KGIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 289 ~~~~~~~~~~~~~wSPDg~~ 308 (789)
..-...+..++++|||+.
T Consensus 448 --~Dl~~lITAvcy~PdGk~ 465 (712)
T KOG0283|consen 448 --NDLRDLITAVCYSPDGKG 465 (712)
T ss_pred --hhhhhhheeEEeccCCce
Confidence 344457889999999997
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00079 Score=70.27 Aligned_cols=189 Identities=18% Similarity=0.156 Sum_probs=95.7
Q ss_pred EEEEEccCCce-EeccCCCC---CCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 275 LFVININSGEV-QAVKGIPK---SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 275 l~v~d~~~g~~-~~l~~~~~---~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
+++++++.+.. +.+..... ..........|||+ ++|....... .+... ......||+++.
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~-----~wfgt~~~~~--~~~~~-~~~~G~lyr~~p-------- 150 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR-----IWFGDMGYFD--LGKSE-ERPTGSLYRVDP-------- 150 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC-----EEEeCCCccc--cCccc-cCCcceEEEEcC--------
Confidence 44555555544 33321111 12456778899987 7887654100 00000 012236999996
Q ss_pred hhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeee
Q 003886 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~ 430 (789)
.++..+.+..+.......+|||||+.|+++-... ..||+++++.... .+... ...+
T Consensus 151 ---------~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~----------~~i~r~~~d~~~g-~~~~~----~~~~ 206 (307)
T COG3386 151 ---------DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA----------NRIHRYDLDPATG-PIGGR----RGFV 206 (307)
T ss_pred ---------CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC----------CeEEEEecCcccC-ccCCc----ceEE
Confidence 5556666666566678899999999887776442 5799998874111 11111 1111
Q ss_pred eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEe-eecCCEEEEEEeCC
Q 003886 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLL-TLDGDNIIAVSSSP 509 (789)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~-s~dg~~l~~~~ss~ 509 (789)
.+.. .+| ..-..+...||. |+..+.+++ ..|.+++.++..+..+.-.....+...| .++.+.|+.+....
T Consensus 207 ~~~~---~~G----~PDG~~vDadG~-lw~~a~~~g-~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 207 DFDE---EPG----LPDGMAVDADGN-LWVAAVWGG-GRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred EccC---CCC----CCCceEEeCCCC-EEEecccCC-ceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 1111 111 122444555665 443333332 3566677763344444333121222222 34557777776665
Q ss_pred CCC
Q 003886 510 VDV 512 (789)
Q Consensus 510 ~~p 512 (789)
..+
T Consensus 278 ~~~ 280 (307)
T COG3386 278 GMS 280 (307)
T ss_pred CCC
Confidence 554
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.16 E-value=8e-05 Score=80.43 Aligned_cols=196 Identities=17% Similarity=0.202 Sum_probs=107.5
Q ss_pred eEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCC
Q 003886 167 KLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGS 245 (789)
Q Consensus 167 ~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~ 245 (789)
.|.++.+++ ..++..++ ...+....+......| ..+.+||||++++.. ..
T Consensus 6 ~l~~V~~~~--~~~v~viD~~t~~~~~~i~~~~~~h---------~~~~~s~Dgr~~yv~-~r----------------- 56 (369)
T PF02239_consen 6 NLFYVVERG--SGSVAVIDGATNKVVARIPTGGAPH---------AGLKFSPDGRYLYVA-NR----------------- 56 (369)
T ss_dssp GEEEEEEGG--GTEEEEEETTT-SEEEEEE-STTEE---------EEEE-TT-SSEEEEE-ET-----------------
T ss_pred cEEEEEecC--CCEEEEEECCCCeEEEEEcCCCCce---------eEEEecCCCCEEEEE-cC-----------------
Confidence 355555443 23577777 4556666666544444 567899999986554 32
Q ss_pred CCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceee
Q 003886 246 SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 325 (789)
Q Consensus 246 ~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~ 325 (789)
+..|-++|+.++++..- +........+++||||++ + ++++..
T Consensus 57 --------------------------dg~vsviD~~~~~~v~~--i~~G~~~~~i~~s~DG~~----~-~v~n~~----- 98 (369)
T PF02239_consen 57 --------------------------DGTVSVIDLATGKVVAT--IKVGGNPRGIAVSPDGKY----V-YVANYE----- 98 (369)
T ss_dssp --------------------------TSEEEEEETTSSSEEEE--EE-SSEEEEEEE--TTTE----E-EEEEEE-----
T ss_pred --------------------------CCeEEEEECCcccEEEE--EecCCCcceEEEcCCCCE----E-EEEecC-----
Confidence 25689999999886543 344455678999999996 5 555321
Q ss_pred eeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe-eecCCC-------CCccCcceecCCCCEEEEEecCCCCCC
Q 003886 326 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES-------ISSAFFPRFSPDGKFLVFLSAKSSVDS 397 (789)
Q Consensus 326 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~-------~~~~~~p~~SpDG~~la~~s~~~~~~~ 397 (789)
+..+.++|. ++.+. +.+... ........-||++..+++.-.+
T Consensus 99 --------~~~v~v~D~-----------------~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd----- 148 (369)
T PF02239_consen 99 --------PGTVSVIDA-----------------ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD----- 148 (369)
T ss_dssp --------TTEEEEEET-----------------TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT-----
T ss_pred --------CCceeEecc-----------------ccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc-----
Confidence 236888886 44433 333221 1112344567888866665543
Q ss_pred CCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCC
Q 003886 398 GAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 477 (789)
Q Consensus 398 g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~t 477 (789)
..+++++|......... ..+.+ +.+ +....|+||+++++....... .+-.+|..+
T Consensus 149 -----~~~I~vVdy~d~~~~~~-----~~i~~------g~~-------~~D~~~dpdgry~~va~~~sn--~i~viD~~~ 203 (369)
T PF02239_consen 149 -----TGEIWVVDYSDPKNLKV-----TTIKV------GRF-------PHDGGFDPDGRYFLVAANGSN--KIAVIDTKT 203 (369)
T ss_dssp -----TTEEEEEETTTSSCEEE-----EEEE--------TT-------EEEEEE-TTSSEEEEEEGGGT--EEEEEETTT
T ss_pred -----CCeEEEEEeccccccce-----eeecc------ccc-------ccccccCcccceeeecccccc--eeEEEeecc
Confidence 24799999765322100 01111 112 124579999998876544333 677888888
Q ss_pred CcEEEec
Q 003886 478 GELLRIT 484 (789)
Q Consensus 478 g~~~~lt 484 (789)
++...+.
T Consensus 204 ~k~v~~i 210 (369)
T PF02239_consen 204 GKLVALI 210 (369)
T ss_dssp TEEEEEE
T ss_pred ceEEEEe
Confidence 8776654
|
... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0017 Score=67.12 Aligned_cols=264 Identities=14% Similarity=0.142 Sum_probs=139.3
Q ss_pred cEEEEeCCCCCeEEEEec-----CCCCCCeEEEEecCC--ceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeec
Q 003886 156 ASAVVPSPSGSKLLVVRN-----PENESPIQFELWSQS--QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~-----~~~~~~~~~~i~~~~--~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~ 228 (789)
...+..||||+.++.... ..+....+.++|+.. ....++.++...+--+ -.....+..|.|||++++.-.-
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~--~~~~~~~~ls~dgk~~~V~N~T 115 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV--VPYKNMFALSADGKFLYVQNFT 115 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B--S--GGGEEE-TTSSEEEEEEES
T ss_pred CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee--cccccceEEccCCcEEEEEccC
Confidence 456789999999986531 122456788888544 4456666665411000 0012467899999988764322
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCC
Q 003886 229 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~ 308 (789)
.-..+-|+|++.+++... ++-..+..-+ |-|+.
T Consensus 116 ------------------------------------------Pa~SVtVVDl~~~kvv~e--i~~PGC~~iy---P~~~~ 148 (342)
T PF06433_consen 116 ------------------------------------------PATSVTVVDLAAKKVVGE--IDTPGCWLIY---PSGNR 148 (342)
T ss_dssp ------------------------------------------SSEEEEEEETTTTEEEEE--EEGTSEEEEE---EEETT
T ss_pred ------------------------------------------CCCeEEEEECCCCceeee--ecCCCEEEEE---ecCCC
Confidence 236899999999987654 2323222222 22222
Q ss_pred CccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe-eecCC---C--CCccCcceecCC
Q 003886 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTE---S--ISSAFFPRFSPD 382 (789)
Q Consensus 309 ~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~---~--~~~~~~p~~SpD 382 (789)
. +.-. | ++..+..+.++ +.|+. ++.+. . ..-...|.++.+
T Consensus 149 ~---F~~l-------------C--~DGsl~~v~Ld----------------~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~ 194 (342)
T PF06433_consen 149 G---FSML-------------C--GDGSLLTVTLD----------------ADGKEAQKSTKVFDPDDDPLFEHPAYSRD 194 (342)
T ss_dssp E---EEEE-------------E--TTSCEEEEEET----------------STSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred c---eEEE-------------e--cCCceEEEEEC----------------CCCCEeEeeccccCCCCcccccccceECC
Confidence 0 2212 3 23356666663 22222 22211 1 123457788888
Q ss_pred CCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeecc--CCCCCccccccCCCCCccccCCCEEEE
Q 003886 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA--EGDCFPGLYSSSILSNPWLSDGCTMLL 460 (789)
Q Consensus 383 G~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~--~~~~f~g~~~~~~~~~~ws~Dg~~l~~ 460 (789)
+.+++|.+-.. .+|-.|+.+...+.. ....+.... .++-.|| +...+++.+..++||+
T Consensus 195 ~~~~~F~Sy~G-----------~v~~~dlsg~~~~~~-----~~~~~~t~~e~~~~WrPG----G~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 195 GGRLYFVSYEG-----------NVYSADLSGDSAKFG-----KPWSLLTDAEKADGWRPG----GWQLIAYHAASGRLYV 254 (342)
T ss_dssp TTEEEEEBTTS-----------EEEEEEETTSSEEEE-----EEEESS-HHHHHTTEEE-----SSS-EEEETTTTEEEE
T ss_pred CCeEEEEecCC-----------EEEEEeccCCccccc-----CcccccCccccccCcCCc----ceeeeeeccccCeEEE
Confidence 88899988653 689999877543211 111111111 1122343 2334567777778887
Q ss_pred EEEeC-------CeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 003886 461 SSIWG-------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 524 (789)
Q Consensus 461 ~~~~~-------~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~ 524 (789)
.-..+ +...||.+|+++++..+-.+.........++.|.+-++|..+..+ ..|+++|..+++
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~--~~l~v~D~~tGk 323 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGD--GTLDVYDAATGK 323 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTT--TEEEEEETTT--
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCC--CeEEEEeCcCCc
Confidence 65432 357899999999876543332222223566777776666554422 348888876553
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.9e-05 Score=77.56 Aligned_cols=123 Identities=15% Similarity=0.134 Sum_probs=81.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhc-----cCCC-----
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ-----SLPG----- 645 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~-----~~~~----- 645 (789)
.+-.++.|+.- ..+.+|++|.+.|.+..............|++.|+..+.+..+= ||.--.. .+..
T Consensus 77 a~~~~~~P~~~-~~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Py---yg~RkP~~Q~~s~l~~VsDl~ 152 (348)
T PF09752_consen 77 ARFQLLLPKRW-DSPYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPY---YGQRKPKDQRRSSLRNVSDLF 152 (348)
T ss_pred eEEEEEECCcc-ccCCCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEeccc---ccccChhHhhcccccchhHHH
Confidence 34456678643 34568999999985543222222223567788899998888542 3331111 0100
Q ss_pred CCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
..|...+.+....++|+.++|+ .+++|.|.||||.+|..+++..|..+..+-+.++.
T Consensus 153 ~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~ 209 (348)
T PF09752_consen 153 VMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSWS 209 (348)
T ss_pred HHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeeccc
Confidence 1234457788888999998863 58999999999999999999999877666555553
|
|
| >PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.8e-06 Score=66.94 Aligned_cols=58 Identities=19% Similarity=0.305 Sum_probs=46.2
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchh
Q 003886 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEA 639 (789)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~ 639 (789)
|.+|....+.|++ . .+.+|+++||... ....|...++.|+++||.|+++|+|| +|.+.
T Consensus 1 G~~L~~~~w~p~~---~-~k~~v~i~HG~~e--h~~ry~~~a~~L~~~G~~V~~~D~rG---hG~S~ 58 (79)
T PF12146_consen 1 GTKLFYRRWKPEN---P-PKAVVVIVHGFGE--HSGRYAHLAEFLAEQGYAVFAYDHRG---HGRSE 58 (79)
T ss_pred CcEEEEEEecCCC---C-CCEEEEEeCCcHH--HHHHHHHHHHHHHhCCCEEEEECCCc---CCCCC
Confidence 4668888888862 2 7899999999654 34567788899999999999999998 55554
|
Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. |
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0003 Score=69.93 Aligned_cols=248 Identities=15% Similarity=0.127 Sum_probs=138.6
Q ss_pred CCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003886 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (789)
Q Consensus 105 spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (789)
|+-|..+|. +...+.+.++++.+-+ -.+-|+.+- ..+....||+||++|+..+... ...+
T Consensus 32 s~~G~~lAv---------Gc~nG~vvI~D~~T~~-iar~lsaH~-----~pi~sl~WS~dgr~LltsS~D~-----si~l 91 (405)
T KOG1273|consen 32 SRWGDYLAV---------GCANGRVVIYDFDTFR-IARMLSAHV-----RPITSLCWSRDGRKLLTSSRDW-----SIKL 91 (405)
T ss_pred ccCcceeee---------eccCCcEEEEEccccc-hhhhhhccc-----cceeEEEecCCCCEeeeecCCc-----eeEE
Confidence 366666655 3445567777764432 122333332 3477899999999999887765 4556
Q ss_pred e--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCC
Q 003886 185 W--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 262 (789)
Q Consensus 185 ~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 262 (789)
| ..|...+.+.++..+ ....|.|-.+..+.+.--.
T Consensus 92 wDl~~gs~l~rirf~spv----------~~~q~hp~k~n~~va~~~~--------------------------------- 128 (405)
T KOG1273|consen 92 WDLLKGSPLKRIRFDSPV----------WGAQWHPRKRNKCVATIME--------------------------------- 128 (405)
T ss_pred EeccCCCceeEEEccCcc----------ceeeeccccCCeEEEEEec---------------------------------
Confidence 6 356677777776655 7888999665555443221
Q ss_pred cccccCCccCceEEEEEccCCceEeccC-CCCC--CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEE
Q 003886 263 WGETYAGKRQPSLFVININSGEVQAVKG-IPKS--LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339 (789)
Q Consensus 263 ~g~~~~~~~~~~l~v~d~~~g~~~~l~~-~~~~--~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~ 339 (789)
..-+++++..++.+.|.. .+++ .......|.+-|+. | ++++.. ..|-.
T Consensus 129 ----------~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~y----I-itGtsK--------------Gkllv 179 (405)
T KOG1273|consen 129 ----------ESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKY----I-ITGTSK--------------GKLLV 179 (405)
T ss_pred ----------CCcEEEEecCCceeeccCCCccccccccccccccCCCCE----E-EEecCc--------------ceEEE
Confidence 112345554455454421 1111 12333468888886 4 455322 35777
Q ss_pred EecccccchhhhhhhhcCCCCCCCee---ecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC---
Q 003886 340 VRVSLYKSEASELELKESSSEDLPVV---NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT--- 413 (789)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~~---~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~--- 413 (789)
+|. ++-++. ++|. ...+.+..+|-.|+.|++.+.+. -|..++...
T Consensus 180 ~~a-----------------~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDR-----------vIR~ye~~di~~ 230 (405)
T KOG1273|consen 180 YDA-----------------ETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDR-----------VIRTYEISDIDD 230 (405)
T ss_pred Eec-----------------chheeeeeeeech-heeeeEEEEeccCcEEEEecCCc-----------eEEEEehhhhcc
Confidence 776 333322 2222 23467889999999998877554 255555431
Q ss_pred CCC-CCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC
Q 003886 414 NGN-FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE 487 (789)
Q Consensus 414 ~~~-~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~ 487 (789)
.+. ..++.. ..+.++++.. .-...+||.||.++...+ ...-.||.+....|.+.++..+.
T Consensus 231 ~~r~~e~e~~-~K~qDvVNk~-----------~Wk~ccfs~dgeYv~a~s--~~aHaLYIWE~~~GsLVKILhG~ 291 (405)
T KOG1273|consen 231 EGRDGEVEPE-HKLQDVVNKL-----------QWKKCCFSGDGEYVCAGS--ARAHALYIWEKSIGSLVKILHGT 291 (405)
T ss_pred cCccCCcChh-HHHHHHHhhh-----------hhhheeecCCccEEEecc--ccceeEEEEecCCcceeeeecCC
Confidence 100 001100 0111111110 012457888998775544 34456899998899998887654
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.001 Score=68.03 Aligned_cols=185 Identities=16% Similarity=0.178 Sum_probs=109.9
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCC-CccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 157 SAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~-~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
..-+|||||++|+.+.+.-+....++-+|+ ....+++-+.+. ++ |. ..+.|.|||+.|+.. +......|
T Consensus 54 GHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GI-GP-------Hel~l~pDG~tLvVA-NGGI~Thp 124 (305)
T PF07433_consen 54 GHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGI-GP-------HELLLMPDGETLVVA-NGGIETHP 124 (305)
T ss_pred cCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCc-Ch-------hhEEEcCCCCEEEEE-cCCCccCc
Confidence 367899999998776655455667888883 334555555432 21 11 378899999888764 22211110
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceE-eccCCC---CCCccceEEEeeCCCCCc
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKGIP---KSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~-~l~~~~---~~~~~~~~~wSPDg~~~~ 310 (789)
.. ++ .+......++.|..+|..+|++. +.. .+ ...++..+++.+||.
T Consensus 125 d~-------GR------------------~kLNl~tM~psL~~ld~~sG~ll~q~~-Lp~~~~~lSiRHLa~~~~G~--- 175 (305)
T PF07433_consen 125 DS-------GR------------------AKLNLDTMQPSLVYLDARSGALLEQVE-LPPDLHQLSIRHLAVDGDGT--- 175 (305)
T ss_pred cc-------Cc------------------eecChhhcCCceEEEecCCCceeeeee-cCccccccceeeEEecCCCc---
Confidence 00 00 01122335689999999999853 322 22 235788999999987
Q ss_pred cEEEEEe-ecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeec-------CCCCCccCcceecCC
Q 003886 311 QYLVFVG-WSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-------TESISSAFFPRFSPD 382 (789)
Q Consensus 311 ~~l~f~~-~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-------t~~~~~~~~p~~SpD 382 (789)
++|.. ++.++. ....-|...+. +...+.+ ..-.+++.+.++++|
T Consensus 176 --V~~a~Q~qg~~~--------~~~PLva~~~~------------------g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~ 227 (305)
T PF07433_consen 176 --VAFAMQYQGDPG--------DAPPLVALHRR------------------GGALRLLPAPEEQWRRLNGYIGSIAADRD 227 (305)
T ss_pred --EEEEEecCCCCC--------ccCCeEEEEcC------------------CCcceeccCChHHHHhhCCceEEEEEeCC
Confidence 55543 333321 01122333332 1112222 122467889999999
Q ss_pred CCEEEEEecCCCCCCCCccccceeEEeecCCCCCC
Q 003886 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (789)
Q Consensus 383 G~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~ 417 (789)
|..++.++.+. ..+.+||..++...
T Consensus 228 g~~ia~tsPrG----------g~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 228 GRLIAVTSPRG----------GRVAVWDAATGRLL 252 (305)
T ss_pred CCEEEEECCCC----------CEEEEEECCCCCEe
Confidence 99999888775 35788898886653
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.4e-05 Score=71.06 Aligned_cols=179 Identities=15% Similarity=0.177 Sum_probs=117.5
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--c
Q 003886 109 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--S 186 (789)
Q Consensus 109 ~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~ 186 (789)
+.++|+.+...+..+...+-|.++++......+..+..++ +++....|.-..+.|+-..+.. -.++| .
T Consensus 104 k~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ght-----g~Ir~v~wc~eD~~iLSSadd~-----tVRLWD~r 173 (334)
T KOG0278|consen 104 KAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT-----GGIRTVLWCHEDKCILSSADDK-----TVRLWDHR 173 (334)
T ss_pred eeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCC-----CcceeEEEeccCceEEeeccCC-----ceEEEEec
Confidence 3577877777777777788888888766655555555555 6788888988888887654332 35666 4
Q ss_pred CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccc
Q 003886 187 QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGET 266 (789)
Q Consensus 187 ~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~ 266 (789)
.+...+.+++...+ .++..|+||+.|..+ .
T Consensus 174 Tgt~v~sL~~~s~V----------tSlEvs~dG~ilTia-~--------------------------------------- 203 (334)
T KOG0278|consen 174 TGTEVQSLEFNSPV----------TSLEVSQDGRILTIA-Y--------------------------------------- 203 (334)
T ss_pred cCcEEEEEecCCCC----------cceeeccCCCEEEEe-c---------------------------------------
Confidence 66667777776666 789999999866442 1
Q ss_pred cCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEeccccc
Q 003886 267 YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 346 (789)
Q Consensus 267 ~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 346 (789)
...|-.||..+-++..- ..-...+.+...+|+-. ++..+. ....+|.+|.
T Consensus 204 -----gssV~Fwdaksf~~lKs--~k~P~nV~SASL~P~k~-----~fVaGg--------------ed~~~~kfDy---- 253 (334)
T KOG0278|consen 204 -----GSSVKFWDAKSFGLLKS--YKMPCNVESASLHPKKE-----FFVAGG--------------EDFKVYKFDY---- 253 (334)
T ss_pred -----CceeEEeccccccceee--ccCccccccccccCCCc-----eEEecC--------------cceEEEEEec----
Confidence 13455677665433222 22344567888999874 444442 2336888887
Q ss_pred chhhhhhhhcCCCCCCCeeec--CCCCCccCcceecCCCCEEEEEe
Q 003886 347 SEASELELKESSSEDLPVVNL--TESISSAFFPRFSPDGKFLVFLS 390 (789)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~L--t~~~~~~~~p~~SpDG~~la~~s 390 (789)
.+++..-+ ..+.+.+...+|||||..-+.-|
T Consensus 254 -------------~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGS 286 (334)
T KOG0278|consen 254 -------------NTGEEIGSYNKGHFGPVHCVRFSPDGELYASGS 286 (334)
T ss_pred -------------cCCceeeecccCCCCceEEEEECCCCceeeccC
Confidence 56655444 45567788999999998444333
|
|
| >PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.2e-05 Score=82.48 Aligned_cols=120 Identities=20% Similarity=0.314 Sum_probs=80.1
Q ss_pred EEEEEe-cCCCCCCCCCcEEEEEcCCCCCCCch--hhH--HHHHHHHHCCcEEEEEcCCCCC--CCCchhhccCCCCCCc
Q 003886 577 EAIFVS-SSHKKDCSCDPLIVVLHGGPHSVSLS--SYS--KSLAFLSSVGYSLLIVNYRGSL--GFGEEALQSLPGKVGS 649 (789)
Q Consensus 577 ~~~~~~-P~~~~~~~~~P~vv~~HGg~~~~~~~--~~~--~~~~~la~~Gy~V~~~d~rGs~--G~G~~~~~~~~~~~~~ 649 (789)
.-|++. |..++ .+..|+||++|||+...... +.. .....+.. ...+++.||.-.. .+|. .-.
T Consensus 107 s~Wlvk~P~~~~-pk~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~-~~SILvLDYsLt~~~~~~~---------~yP 175 (374)
T PF10340_consen 107 SYWLVKAPNRFK-PKSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP-EVSILVLDYSLTSSDEHGH---------KYP 175 (374)
T ss_pred eEEEEeCCcccC-CCCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC-CCeEEEEeccccccccCCC---------cCc
Confidence 357777 76433 33459999999988754322 111 11222223 5699999997532 1222 223
Q ss_pred ccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC--C---CceeEEEEeCCccchh
Q 003886 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--P---DKFVAAAARNPLCNLA 709 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~--p---~~~~a~v~~~pv~~~~ 709 (789)
..+.++.+..++|++.. ..++|.+||-|+||.+++.++... + ..-+.+|+++|.+++.
T Consensus 176 tQL~qlv~~Y~~Lv~~~--G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~ 238 (374)
T PF10340_consen 176 TQLRQLVATYDYLVESE--GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV 238 (374)
T ss_pred hHHHHHHHHHHHHHhcc--CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence 44789999999999542 357899999999999999876531 1 2357999999988875
|
In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved []. |
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00045 Score=68.93 Aligned_cols=238 Identities=11% Similarity=0.074 Sum_probs=124.5
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (789)
.++||..++-. ++.| .+.+++. ..+.....+.... .++....|--....+.+.++..+. .+..
T Consensus 22 fs~~G~~lits-s~dD--------sl~LYd~-~~g~~~~ti~skk-----yG~~~~~Fth~~~~~i~sStk~d~--tIry 84 (311)
T KOG1446|consen 22 FSDDGLLLITS-SEDD--------SLRLYDS-LSGKQVKTINSKK-----YGVDLACFTHHSNTVIHSSTKEDD--TIRY 84 (311)
T ss_pred ecCCCCEEEEe-cCCC--------eEEEEEc-CCCceeeEeeccc-----ccccEEEEecCCceEEEccCCCCC--ceEE
Confidence 46888777552 3322 5566664 2333333333333 245555555555566666654332 3333
Q ss_pred Ee-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCC
Q 003886 184 LW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 262 (789)
Q Consensus 184 i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 262 (789)
+. .+.+-.+-+. +.+..| ..++-||-+...+..+.++..+ .|+....+..-.. ...-..-..|+|.
T Consensus 85 Lsl~dNkylRYF~---GH~~~V------~sL~~sP~~d~FlS~S~D~tvr--LWDlR~~~cqg~l--~~~~~pi~AfDp~ 151 (311)
T KOG1446|consen 85 LSLHDNKYLRYFP---GHKKRV------NSLSVSPKDDTFLSSSLDKTVR--LWDLRVKKCQGLL--NLSGRPIAAFDPE 151 (311)
T ss_pred EEeecCceEEEcC---CCCceE------EEEEecCCCCeEEecccCCeEE--eeEecCCCCceEE--ecCCCcceeECCC
Confidence 33 2333333332 222222 7889999888887777776544 4443211111000 0001112245555
Q ss_pred cccccCCccCceEEEEEccC---CceEecc-CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceE
Q 003886 263 WGETYAGKRQPSLFVININS---GEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (789)
Q Consensus 263 ~g~~~~~~~~~~l~v~d~~~---g~~~~l~-~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~ 338 (789)
+=-...+.+...|.++|+.. |..+... +.+.......+.||||||. |+... +.+.+|
T Consensus 152 GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~----iLlsT---------------~~s~~~ 212 (311)
T KOG1446|consen 152 GLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKS----ILLST---------------NASFIY 212 (311)
T ss_pred CcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCE----EEEEe---------------CCCcEE
Confidence 31111222334777777653 3222221 1123445678999999998 88776 344789
Q ss_pred EEecccccchhhhhhhhcCCCCCCCeeecCCC---CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCC
Q 003886 339 AVRVSLYKSEASELELKESSSEDLPVVNLTES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~---~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
++|.- .+.....++.. ........|+|||+.++-.+.++ +|++|+++++.
T Consensus 213 ~lDAf----------------~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg-----------~i~vw~~~tg~ 265 (311)
T KOG1446|consen 213 LLDAF----------------DGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDG-----------TIHVWNLETGK 265 (311)
T ss_pred EEEcc----------------CCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCC-----------cEEEEEcCCCc
Confidence 99973 22222233222 22235789999999876555443 69999998876
Q ss_pred CC
Q 003886 416 NF 417 (789)
Q Consensus 416 ~~ 417 (789)
+.
T Consensus 266 ~v 267 (311)
T KOG1446|consen 266 KV 267 (311)
T ss_pred Ee
Confidence 64
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0012 Score=67.51 Aligned_cols=239 Identities=15% Similarity=0.167 Sum_probs=131.7
Q ss_pred ccEEEEeCC-CCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 155 GASAVVPSP-SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 155 ~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
..-.++.+| ++.-++|.+..+ ...++++ .+++..+.+..+.+.| -+..-.|||||++|+ +.|.+..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG---~~~~v~D~~~g~~~~~~~a~~gRH-------FyGHg~fs~dG~~Ly-tTEnd~~- 73 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPG---TFALVFDCRTGQLLQRLWAPPGRH-------FYGHGVFSPDGRLLY-TTENDYE- 73 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCC---cEEEEEEcCCCceeeEEcCCCCCE-------EecCEEEcCCCCEEE-EeccccC-
Confidence 344678999 666677776654 2344555 5676666665554443 124678999999664 5444311
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCC-CCCCccceEEEeeCCCCCcc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI-PKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~-~~~~~~~~~~wSPDg~~~~~ 311 (789)
..+..|-|+|... ..+++... ...+...++.|.|||+.
T Consensus 74 -------------------------------------~g~G~IgVyd~~~-~~~ri~E~~s~GIGPHel~l~pDG~t--- 112 (305)
T PF07433_consen 74 -------------------------------------TGRGVIGVYDAAR-GYRRIGEFPSHGIGPHELLLMPDGET--- 112 (305)
T ss_pred -------------------------------------CCcEEEEEEECcC-CcEEEeEecCCCcChhhEEEcCCCCE---
Confidence 1567899999983 33333212 23456678999999987
Q ss_pred EEEEEeecCC-----ceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eee--cCC--CCCccCcceecC
Q 003886 312 YLVFVGWSSE-----TRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVN--LTE--SISSAFFPRFSP 381 (789)
Q Consensus 312 ~l~f~~~~~~-----~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~--Lt~--~~~~~~~p~~Sp 381 (789)
|+.. |-.- ..|.-++.. .-...|.++|. .+|+ ..+ |.. +.-++...++.+
T Consensus 113 -LvVA-NGGI~Thpd~GR~kLNl~-tM~psL~~ld~-----------------~sG~ll~q~~Lp~~~~~lSiRHLa~~~ 172 (305)
T PF07433_consen 113 -LVVA-NGGIETHPDSGRAKLNLD-TMQPSLVYLDA-----------------RSGALLEQVELPPDLHQLSIRHLAVDG 172 (305)
T ss_pred -EEEE-cCCCccCcccCceecChh-hcCCceEEEec-----------------CCCceeeeeecCccccccceeeEEecC
Confidence 6653 3211 111111111 12235777876 4554 333 533 345789999999
Q ss_pred CCCEEEEEecCCCCCCCCccccc-eeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEE
Q 003886 382 DGKFLVFLSAKSSVDSGAHSATD-SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 460 (789)
Q Consensus 382 DG~~la~~s~~~~~~~g~~~~~~-~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~ 460 (789)
||.- +|...-. |+..... -|.+.+ .++...+.....+. ...+.+ | +.++++++||+.+.+
T Consensus 173 ~G~V-~~a~Q~q----g~~~~~~PLva~~~--~g~~~~~~~~p~~~--------~~~l~~-Y---~gSIa~~~~g~~ia~ 233 (305)
T PF07433_consen 173 DGTV-AFAMQYQ----GDPGDAPPLVALHR--RGGALRLLPAPEEQ--------WRRLNG-Y---IGSIAADRDGRLIAV 233 (305)
T ss_pred CCcE-EEEEecC----CCCCccCCeEEEEc--CCCcceeccCChHH--------HHhhCC-c---eEEEEEeCCCCEEEE
Confidence 9973 3443322 2211221 233332 22221111100000 001221 2 346789999998888
Q ss_pred EEEeCCeEEEEEEECCCCcEEEecCCC
Q 003886 461 SSIWGSSQVIISVNVSSGELLRITPAE 487 (789)
Q Consensus 461 ~~~~~~~~~l~~~dl~tg~~~~lt~~~ 487 (789)
++-.++...+| |..+|++.....-.
T Consensus 234 tsPrGg~~~~~--d~~tg~~~~~~~l~ 258 (305)
T PF07433_consen 234 TSPRGGRVAVW--DAATGRLLGSVPLP 258 (305)
T ss_pred ECCCCCEEEEE--ECCCCCEeeccccC
Confidence 87777766665 88899988766554
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0001 Score=76.14 Aligned_cols=210 Identities=15% Similarity=0.139 Sum_probs=114.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
+.....++++||..|+....++ .+++|+=-....+.+. ...|+.| .++.|||||+.|+++..
T Consensus 145 g~~k~vaf~~~gs~latgg~dg-----~lRv~~~Ps~~t~l~e-~~~~~eV------~DL~FS~dgk~lasig~------ 206 (398)
T KOG0771|consen 145 GQQKVVAFNGDGSKLATGGTDG-----TLRVWEWPSMLTILEE-IAHHAEV------KDLDFSPDGKFLASIGA------ 206 (398)
T ss_pred CcceEEEEcCCCCEeeeccccc-----eEEEEecCcchhhhhh-HhhcCcc------ccceeCCCCcEEEEecC------
Confidence 3456789999999999865443 5667641112222221 1234444 89999999999999743
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCce-EeccCCCCCCccceEEEeeCCCCCccE
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~-~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (789)
....||++++|-. ...++...+.....-.|+-|+.+ .-+
T Consensus 207 ---------------------------------------d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~-~~l 246 (398)
T KOG0771|consen 207 ---------------------------------------DSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQ-ETL 246 (398)
T ss_pred ---------------------------------------CceEEEEeccCchhhhcCCcccchhhhhceecccCCC-ceE
Confidence 3577899888843 33322233445667788888743 111
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
.++....... .|-.+++..+. . . +-...++.......+.+...|+||+.+|..+++
T Consensus 247 ~laa~~~~~~-------------~v~~~~~~~w~-~---------~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 247 RLAASQFPGG-------------GVRLCDISLWS-G---------S-NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred EEEEecCCCC-------------ceeEEEeeeec-c---------c-cccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 3333211111 22223321000 0 0 112334444445568899999999999998875
Q ss_pred CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (789)
. .+-+++..+=+..+..... +...+..+.|+||.+++.= .+.+.+..+..
T Consensus 303 G-----------sVai~~~~~lq~~~~vk~a------------------H~~~VT~ltF~Pdsr~~~s-vSs~~~~~v~~ 352 (398)
T KOG0771|consen 303 G-----------SVAIYDAKSLQRLQYVKEA------------------HLGFVTGLTFSPDSRYLAS-VSSDNEAAVTK 352 (398)
T ss_pred C-----------cEEEEEeceeeeeEeehhh------------------heeeeeeEEEcCCcCcccc-cccCCceeEEE
Confidence 4 3566664432211111111 1123456778999886643 33344445555
Q ss_pred EEC
Q 003886 473 VNV 475 (789)
Q Consensus 473 ~dl 475 (789)
+..
T Consensus 353 l~v 355 (398)
T KOG0771|consen 353 LAV 355 (398)
T ss_pred Eee
Confidence 443
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00041 Score=73.33 Aligned_cols=167 Identities=16% Similarity=0.141 Sum_probs=90.8
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEec-C-CCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-P-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~-~-~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
...-.|.|+.+....... .++.-.+|.+.......+++.. + ++..-. .....|+|||++||-...+.
T Consensus 271 lt~g~whP~~k~~FlT~s-~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~------~tsC~~nrdg~~iAagc~DG---- 339 (641)
T KOG0772|consen 271 LTCGCWHPDNKEEFLTCS-YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP------VTSCAWNRDGKLIAAGCLDG---- 339 (641)
T ss_pred eeccccccCcccceEEec-CCCcEEEEecCCchhheeEEeeccCCCcccC------ceeeecCCCcchhhhcccCC----
Confidence 445569999988754443 3355556665544444454433 1 111111 15789999999988765443
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEec---c-CCCCCCccceEEEeeCCCCC
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV---K-GIPKSLSVGQVVWAPLNEGL 309 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l---~-~~~~~~~~~~~~wSPDg~~~ 309 (789)
.|..|+..+-.++.. . .......+..++||+||+.
T Consensus 340 ----------------------------------------SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~- 378 (641)
T KOG0772|consen 340 ----------------------------------------SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY- 378 (641)
T ss_pred ----------------------------------------ceeeeecCCcccccceEeeeccCCCCceeEEEeccccch-
Confidence 344444322111111 0 0222335678999999999
Q ss_pred ccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC---CCccCcceecCCCCEE
Q 003886 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES---ISSAFFPRFSPDGKFL 386 (789)
Q Consensus 310 ~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~---~~~~~~p~~SpDG~~l 386 (789)
|+..+. +..|.++||+ .-.++.....+ ....+...||||-+.|
T Consensus 379 ---LlSRg~---------------D~tLKvWDLr----------------q~kkpL~~~tgL~t~~~~tdc~FSPd~kli 424 (641)
T KOG0772|consen 379 ---LLSRGF---------------DDTLKVWDLR----------------QFKKPLNVRTGLPTPFPGTDCCFSPDDKLI 424 (641)
T ss_pred ---hhhccC---------------CCceeeeecc----------------ccccchhhhcCCCccCCCCccccCCCceEE
Confidence 887663 2357777773 22222211111 2235678999998866
Q ss_pred EEEecCCCCCCCCccccceeEEeecCC
Q 003886 387 VFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 387 a~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
+.-+.-.. | .....|+.+|..+
T Consensus 425 ~TGtS~~~---~--~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 425 LTGTSAPN---G--MTAGTLFFFDRMT 446 (641)
T ss_pred EecccccC---C--CCCceEEEEeccc
Confidence 54433221 1 1234688888654
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0012 Score=70.71 Aligned_cols=240 Identities=15% Similarity=0.195 Sum_probs=133.1
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCC--CeEEEEecCCCCC
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSG--SKLLVVRNPENES 178 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG--~~la~~~~~~~~~ 178 (789)
.+++|+|-...+...+ ..+..+++.........|.. .++....+||-+ -+||+-.-..+|.
T Consensus 130 ~~qfs~dEsl~arlv~----------nev~f~~~~~f~~~~~kl~~-------~~i~~f~lSpgp~~~~vAvyvPe~kGa 192 (566)
T KOG2315|consen 130 VPQFSIDESLAARLVS----------NEVQFYDLGSFKTIQHKLSV-------SGITMLSLSPGPEPPFVAVYVPEKKGA 192 (566)
T ss_pred ccccccchhhhhhhhc----------ceEEEEecCCccceeeeeec-------cceeeEEecCCCCCceEEEEccCCCCC
Confidence 6777788776666532 24555554332222223322 346677777764 4566544444466
Q ss_pred CeEEEEecCCc--eeEEEec-CCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCC
Q 003886 179 PIQFELWSQSQ--LEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 255 (789)
Q Consensus 179 ~~~~~i~~~~~--~~~~~~~-~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (789)
+....++.-.. ..+.... .--..++ -.+.|.+-|+-|+..+..+... ...+|.
T Consensus 193 Pa~vri~~~~~~~~~~~~a~ksFFkadk-------vqm~WN~~gt~LLvLastdVDk----------------tn~SYY- 248 (566)
T KOG2315|consen 193 PASVRIYKYPEEGQHQPVANKSFFKADK-------VQMKWNKLGTALLVLASTDVDK----------------TNASYY- 248 (566)
T ss_pred CcEEEEeccccccccchhhhccccccce-------eEEEeccCCceEEEEEEEeecC----------------CCcccc-
Confidence 66666662211 1111110 0000011 2688999999988876433211 011111
Q ss_pred cceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCc
Q 003886 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 335 (789)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~ 335 (789)
+...||++++++... .+. ......+.++.|+|+|+. .+.+- |. -+.
T Consensus 249 ---------------GEq~Lyll~t~g~s~-~V~-L~k~GPVhdv~W~~s~~E----F~Vvy--------Gf-----MPA 294 (566)
T KOG2315|consen 249 ---------------GEQTLYLLATQGESV-SVP-LLKEGPVHDVTWSPSGRE----FAVVY--------GF-----MPA 294 (566)
T ss_pred ---------------ccceEEEEEecCceE-EEe-cCCCCCceEEEECCCCCE----EEEEE--------ec-----ccc
Confidence 337899999884433 332 456678899999999998 55442 11 233
Q ss_pred ceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCC
Q 003886 336 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 336 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
.+-++|+ ....+-.+.++ .-...-|||.|+.|++..-. +-..++-+||...-+
T Consensus 295 kvtifnl-----------------r~~~v~df~eg--pRN~~~fnp~g~ii~lAGFG--------NL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 295 KVTIFNL-----------------RGKPVFDFPEG--PRNTAFFNPHGNIILLAGFG--------NLPGDMEVWDVPNRK 347 (566)
T ss_pred eEEEEcC-----------------CCCEeEeCCCC--CccceEECCCCCEEEEeecC--------CCCCceEEEeccchh
Confidence 5566666 44444444333 33457899999998876643 234579999987722
Q ss_pred CCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEE
Q 003886 416 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 463 (789)
Q Consensus 416 ~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (789)
.++.-. . ..-.-+.|+|||++++..+.
T Consensus 348 --~i~~~~--a-----------------~~tt~~eW~PdGe~flTATT 374 (566)
T KOG2315|consen 348 --LIAKFK--A-----------------ANTTVFEWSPDGEYFLTATT 374 (566)
T ss_pred --hccccc--c-----------------CCceEEEEcCCCcEEEEEec
Confidence 222111 0 01224579999998876554
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00018 Score=77.57 Aligned_cols=140 Identities=13% Similarity=0.139 Sum_probs=84.5
Q ss_pred CceEEEEEccCCceE-eccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 272 QPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
+..|-+||+.+++.. .+ ......+..++|||||+. |+-++. +..|+++...
T Consensus 699 d~Ti~lWDl~~~~~~~~l--~gHtdqIf~~AWSpdGr~----~AtVcK---------------Dg~~rVy~Pr------- 750 (1012)
T KOG1445|consen 699 DSTIELWDLANAKLYSRL--VGHTDQIFGIAWSPDGRR----IATVCK---------------DGTLRVYEPR------- 750 (1012)
T ss_pred cceeeeeehhhhhhhhee--ccCcCceeEEEECCCCcc----eeeeec---------------CceEEEeCCC-------
Confidence 467889999988654 33 233446789999999999 999882 3367777752
Q ss_pred hhhhhcCCCCCCCeeecCCCC----CccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeE
Q 003886 351 ELELKESSSEDLPVVNLTESI----SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~----~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v 426 (789)
.+ .+.+.++. .......|-=||+.|+....+.. ...+|.+||.++-....+....-++
T Consensus 751 ----------s~-e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~-------SeRQv~~Y~Aq~l~~~pl~t~~lDv 812 (1012)
T KOG1445|consen 751 ----------SR-EQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKS-------SERQVQMYDAQTLDLRPLYTQVLDV 812 (1012)
T ss_pred ----------CC-CCccccCCCCccCcceeEEEEecCcEEEEeccccc-------chhhhhhhhhhhccCCcceeeeecc
Confidence 11 22222222 22456788899999887776652 3457888886653333332221122
Q ss_pred EeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
.+ +..-+.+.+|...|++++..+....+|-+
T Consensus 813 ap----------------s~LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 813 AP----------------SPLVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred cC----------------ccccccccCCCceEEEecCCCceEEEEEe
Confidence 11 33445677898877766544444444443
|
|
| >KOG2112 consensus Lysophospholipase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.8e-05 Score=72.22 Aligned_cols=157 Identities=19% Similarity=0.204 Sum_probs=87.3
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCC-----CCCCC-CchhhccC--CCCCCc--ccHHHHHHHHHH
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR-----GSLGF-GEEALQSL--PGKVGS--QDVNDVLTAIDH 661 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~r-----Gs~G~-G~~~~~~~--~~~~~~--~~~~D~~~~i~~ 661 (789)
.-+||++||-+.+ ...|......+.-+...-++|.-+ ...|. +..+.+.. ..+... .......+.+..
T Consensus 3 ~atIi~LHglGDs--g~~~~~~~~~l~l~NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~ 80 (206)
T KOG2112|consen 3 TATIIFLHGLGDS--GSGWAQFLKQLPLPNIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIAN 80 (206)
T ss_pred eEEEEEEecCCCC--CccHHHHHHcCCCCCeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHH
Confidence 3579999996554 344433333344445555555321 11121 11221111 011111 112222333444
Q ss_pred HHHc---CCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCC
Q 003886 662 VIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESP 738 (789)
Q Consensus 662 l~~~---~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (789)
++++ ..++.+||++-|.|+||.++++++..++....+.....++..-.. ...+.| +
T Consensus 81 Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~----~~~~~~-----------------~ 139 (206)
T KOG2112|consen 81 LIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRAS----IGLPGW-----------------L 139 (206)
T ss_pred HHHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccch----hhccCC-----------------c
Confidence 4432 238899999999999999999999988765555555555432000 000000 0
Q ss_pred ChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 739 SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 739 ~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
+ .. + .+|+++.||+.|++||..-+.+..+.|+.
T Consensus 140 ------------~--~~-~-~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~ 172 (206)
T KOG2112|consen 140 ------------P--GV-N-YTPILLCHGTADPLVPFRFGEKSAQFLKS 172 (206)
T ss_pred ------------c--cc-C-cchhheecccCCceeehHHHHHHHHHHHH
Confidence 0 01 1 67999999999999999988888777654
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00058 Score=67.60 Aligned_cols=166 Identities=11% Similarity=0.020 Sum_probs=97.2
Q ss_pred CceEEEEEccCCce--EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchh
Q 003886 272 QPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (789)
Q Consensus 272 ~~~l~v~d~~~g~~--~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (789)
+.+|++|++.+... -.+ ......+-.+.|.+|++. |+..+ .+..++.+|+
T Consensus 68 Dr~I~LWnv~gdceN~~~l--kgHsgAVM~l~~~~d~s~----i~S~g---------------tDk~v~~wD~------- 119 (338)
T KOG0265|consen 68 DRAIVLWNVYGDCENFWVL--KGHSGAVMELHGMRDGSH----ILSCG---------------TDKTVRGWDA------- 119 (338)
T ss_pred cceEEEEeccccccceeee--ccccceeEeeeeccCCCE----EEEec---------------CCceEEEEec-------
Confidence 35788898765432 122 122335678999999998 77776 2347999998
Q ss_pred hhhhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEe
Q 003886 350 SELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 428 (789)
Q Consensus 350 ~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~ 428 (789)
++|+ .++...+...+....-+.-|-.|+-...++ .++.+||..+.+..++......
T Consensus 120 ----------~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD----------~t~kl~D~R~k~~~~t~~~kyq--- 176 (338)
T KOG0265|consen 120 ----------ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDD----------GTLKLWDIRKKEAIKTFENKYQ--- 176 (338)
T ss_pred ----------ccceeeehhccccceeeecCccccCCeEEEecCCC----------ceEEEEeecccchhhcccccee---
Confidence 4554 455555555455555566677776655443 4688999876555433222222
Q ss_pred eeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC-CceeEEeeecCCEEEEEEe
Q 003886 429 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 429 ~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~-~~~~~~~s~dg~~l~~~~s 507 (789)
+..+.|.-++..+ +++.-++..++| |+..++...++.++. .+.....+++|..++-.+.
T Consensus 177 -----------------ltAv~f~d~s~qv-~sggIdn~ikvW--d~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM 236 (338)
T KOG0265|consen 177 -----------------LTAVGFKDTSDQV-ISGGIDNDIKVW--DLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM 236 (338)
T ss_pred -----------------EEEEEecccccce-eeccccCceeee--ccccCcceEEeecccCceeeEEeccCCCccccccc
Confidence 2345677666655 444334444444 555666666665554 3334466777776655443
Q ss_pred C
Q 003886 508 S 508 (789)
Q Consensus 508 s 508 (789)
+
T Consensus 237 d 237 (338)
T KOG0265|consen 237 D 237 (338)
T ss_pred c
Confidence 3
|
|
| >COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.4e-05 Score=78.26 Aligned_cols=89 Identities=15% Similarity=0.255 Sum_probs=63.8
Q ss_pred HHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHh
Q 003886 612 KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 691 (789)
Q Consensus 612 ~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~ 691 (789)
....+|.++|..|+.++.++ +..+.. ...+...-.+.+..+++.+++. ...++|-++|+|.||.++..+++.
T Consensus 130 s~V~~l~~~g~~vfvIsw~n-Pd~~~~-----~~~~edYi~e~l~~aid~v~~i--tg~~~InliGyCvGGtl~~~ala~ 201 (445)
T COG3243 130 SLVRWLLEQGLDVFVISWRN-PDASLA-----AKNLEDYILEGLSEAIDTVKDI--TGQKDINLIGYCVGGTLLAAALAL 201 (445)
T ss_pred cHHHHHHHcCCceEEEeccC-chHhhh-----hccHHHHHHHHHHHHHHHHHHH--hCccccceeeEecchHHHHHHHHh
Confidence 35788999999999999975 333222 1122222236677888888776 234789999999999999999988
Q ss_pred CCCc-eeEEEEeCCccch
Q 003886 692 APDK-FVAAAARNPLCNL 708 (789)
Q Consensus 692 ~p~~-~~a~v~~~pv~~~ 708 (789)
++.+ ++.++......|+
T Consensus 202 ~~~k~I~S~T~lts~~DF 219 (445)
T COG3243 202 MAAKRIKSLTLLTSPVDF 219 (445)
T ss_pred hhhcccccceeeecchhh
Confidence 8776 8887776655544
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00035 Score=77.02 Aligned_cols=194 Identities=14% Similarity=0.068 Sum_probs=122.5
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCcc
Q 003886 159 VVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 237 (789)
Q Consensus 159 ~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~ 237 (789)
.+||++|+.|+-.-... +..++ .+++.. +......- +.....+..+||++.|+++......+ .|.
T Consensus 25 ~~~s~nG~~L~t~~~d~-----Vi~idv~t~~~~-l~s~~~ed------~d~ita~~l~~d~~~L~~a~rs~llr--v~~ 90 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDR-----VIIIDVATGSIA-LPSGSNED------EDEITALALTPDEEVLVTASRSQLLR--VWS 90 (775)
T ss_pred eeECCCCCEEEEecCce-----EEEEEccCCcee-cccCCccc------hhhhheeeecCCccEEEEeeccceEE--EEE
Confidence 79999999997764442 66666 444332 11111111 12347899999999988876654332 333
Q ss_pred CCCCCCCCCCcC-CCCCCCcceeeCCcccccCCccCceEEEEEccCCceEe-ccCCCCCCccceEEEeeCCCCCccEEEE
Q 003886 238 LGSTKGGSSDKD-CNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-VKGIPKSLSVGQVVWAPLNEGLHQYLVF 315 (789)
Q Consensus 238 ~~~~~~~~~~~~-~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~-l~~~~~~~~~~~~~wSPDg~~~~~~l~f 315 (789)
...++..+.++. +........+.+..+-..++.....+-|||+..+-.+. ++|. ..-+....|.|+-.+ ++++
T Consensus 91 L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~--gGvVssl~F~~~~~~---~lL~ 165 (775)
T KOG0319|consen 91 LPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGH--GGVVSSLLFHPHWNR---WLLA 165 (775)
T ss_pred cccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCC--CceEEEEEeCCccch---hhee
Confidence 333443444443 33333345677776555666778899999999887654 3322 334567788888765 1555
Q ss_pred EeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC-C-eeecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 316 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-P-VVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
.+. .+..++++|+ ..+ . ...+..+...+.+..|++|+..+++.+.+.
T Consensus 166 sg~--------------~D~~v~vwnl-----------------~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDk 214 (775)
T KOG0319|consen 166 SGA--------------TDGTVRVWNL-----------------NDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDK 214 (775)
T ss_pred ecC--------------CCceEEEEEc-----------------ccCchHHHHHHhhhhheeeeeeccCCceEEEeccCc
Confidence 552 2336888887 322 2 345566777899999999999998877554
Q ss_pred CCCCCCccccceeEEeecCC
Q 003886 394 SVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 394 ~~~~g~~~~~~~L~~~d~~~ 413 (789)
-+++||+..
T Consensus 215 -----------vi~vwd~~~ 223 (775)
T KOG0319|consen 215 -----------VIIVWDLVQ 223 (775)
T ss_pred -----------EEEEeehhh
Confidence 488899854
|
|
| >COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00015 Score=70.84 Aligned_cols=176 Identities=16% Similarity=0.098 Sum_probs=94.1
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcC--
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG-- 666 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~-- 666 (789)
..+.-++.+.|-|+. ...|..+...|-. -+.++.+.++| +|.-+. .....|+.+.++.+....
T Consensus 5 ~~~~~L~cfP~AGGs---a~~fr~W~~~lp~-~iel~avqlPG---R~~r~~--------ep~~~di~~Lad~la~el~~ 69 (244)
T COG3208 5 GARLRLFCFPHAGGS---ASLFRSWSRRLPA-DIELLAVQLPG---RGDRFG--------EPLLTDIESLADELANELLP 69 (244)
T ss_pred CCCceEEEecCCCCC---HHHHHHHHhhCCc-hhheeeecCCC---cccccC--------CcccccHHHHHHHHHHHhcc
Confidence 445567777776655 3445555554433 48999999977 443322 222445555555555432
Q ss_pred CCCCccEEEEEcCccHHHHHHHHHhCC---CceeEEEE---eCCccchhhhhcCCCCCcchhhhhccCccccccCCCCC-
Q 003886 667 LANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAA---RNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS- 739 (789)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~~~~~p---~~~~a~v~---~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 739 (789)
..-....+++||||||++|..+|.+.. ....+..+ .+|..+. .-......+-.+...+ ..+.+.+.
T Consensus 70 ~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~--~~~i~~~~D~~~l~~l-----~~lgG~p~e 142 (244)
T COG3208 70 PLLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDR--GKQIHHLDDADFLADL-----VDLGGTPPE 142 (244)
T ss_pred ccCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcc--cCCccCCCHHHHHHHH-----HHhCCCChH
Confidence 133457999999999999998886531 11233322 2332211 1111111222222221 22333331
Q ss_pred -hhhHHHHHhcCc-----------ccc--CCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 740 -VEDLTRFHSKSP-----------ISH--ISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 740 -~~~~~~~~~~sp-----------~~~--~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
.++.+.+.-.-| ..+ -..+.||+.++.|++|..|..++...+-+..+
T Consensus 143 ~led~El~~l~LPilRAD~~~~e~Y~~~~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~ 203 (244)
T COG3208 143 LLEDPELMALFLPILRADFRALESYRYPPPAPLACPIHAFGGEKDHEVSRDELGAWREHTK 203 (244)
T ss_pred HhcCHHHHHHHHHHHHHHHHHhcccccCCCCCcCcceEEeccCcchhccHHHHHHHHHhhc
Confidence 111111111111 111 24688999999999999999988887766554
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.92 E-value=9.3e-05 Score=77.61 Aligned_cols=165 Identities=10% Similarity=0.057 Sum_probs=100.4
Q ss_pred eeEEEEEEeecCCCCc-cceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEec---CCCcc
Q 003886 126 KKFMLSTVISKENENS-VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV---PQTVH 201 (789)
Q Consensus 126 ~~~l~~~~~~~~~~~~-~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~ 201 (789)
-+.+-+|++....... .+||... -.-++.+.|||.+ |+|..-.+ | .+.||+--....+-++ +.+.
T Consensus 486 astlsiWDLAapTprikaeltssa-----paCyALa~spDak-vcFsccsd-G---nI~vwDLhnq~~VrqfqGhtDGa- 554 (705)
T KOG0639|consen 486 ASTLSIWDLAAPTPRIKAELTSSA-----PACYALAISPDAK-VCFSCCSD-G---NIAVWDLHNQTLVRQFQGHTDGA- 554 (705)
T ss_pred cceeeeeeccCCCcchhhhcCCcc-----hhhhhhhcCCccc-eeeeeccC-C---cEEEEEcccceeeecccCCCCCc-
Confidence 4455556654433222 1333322 2356788999975 56765443 2 4667732211222222 2333
Q ss_pred ccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEcc
Q 003886 202 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 281 (789)
Q Consensus 202 g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 281 (789)
.++..|+||.+|.... -++.|.-||+.
T Consensus 555 ---------scIdis~dGtklWTGG--------------------------------------------lDntvRcWDlr 581 (705)
T KOG0639|consen 555 ---------SCIDISKDGTKLWTGG--------------------------------------------LDNTVRCWDLR 581 (705)
T ss_pred ---------eeEEecCCCceeecCC--------------------------------------------Cccceeehhhh
Confidence 7899999999886532 34667778887
Q ss_pred CCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCC
Q 003886 282 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 361 (789)
Q Consensus 282 ~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 361 (789)
.|.-.+- ..-...+.+...+|.|.| |+..- .++.++++.. .+
T Consensus 582 egrqlqq--hdF~SQIfSLg~cP~~dW----lavGM---------------ens~vevlh~-----------------sk 623 (705)
T KOG0639|consen 582 EGRQLQQ--HDFSSQIFSLGYCPTGDW----LAVGM---------------ENSNVEVLHT-----------------SK 623 (705)
T ss_pred hhhhhhh--hhhhhhheecccCCCccc----eeeec---------------ccCcEEEEec-----------------CC
Confidence 6632211 222335678889999998 76543 2336778775 44
Q ss_pred CCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 362 LPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 362 ~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
.+..+|..+..-+.+..|++-||+++.+..+
T Consensus 624 p~kyqlhlheScVLSlKFa~cGkwfvStGkD 654 (705)
T KOG0639|consen 624 PEKYQLHLHESCVLSLKFAYCGKWFVSTGKD 654 (705)
T ss_pred ccceeecccccEEEEEEecccCceeeecCch
Confidence 5567888888889999999999987665544
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0019 Score=69.44 Aligned_cols=153 Identities=18% Similarity=0.202 Sum_probs=88.4
Q ss_pred eEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe-eecCCCCCccCcc
Q 003886 299 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFP 377 (789)
Q Consensus 299 ~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~~~~~~~p 377 (789)
++.|.+-|.. |+..+..+- .+.+.. |-....||.+++ ++..+ ..|. ..+.+...
T Consensus 222 qm~WN~~gt~----LLvLastdV-Dktn~S--YYGEq~Lyll~t-----------------~g~s~~V~L~-k~GPVhdv 276 (566)
T KOG2315|consen 222 QMKWNKLGTA----LLVLASTDV-DKTNAS--YYGEQTLYLLAT-----------------QGESVSVPLL-KEGPVHDV 276 (566)
T ss_pred EEEeccCCce----EEEEEEEee-cCCCcc--ccccceEEEEEe-----------------cCceEEEecC-CCCCceEE
Confidence 6789999987 666542221 122222 335668999997 42222 2343 35678899
Q ss_pred eecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCE
Q 003886 378 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 457 (789)
Q Consensus 378 ~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~ 457 (789)
.|||+|+.++.+. |+-.+ .+-++|+...-...+..+. -..+-|+|.|+.
T Consensus 277 ~W~~s~~EF~Vvy-------GfMPA--kvtifnlr~~~v~df~egp----------------------RN~~~fnp~g~i 325 (566)
T KOG2315|consen 277 TWSPSGREFAVVY-------GFMPA--KVTIFNLRGKPVFDFPEGP----------------------RNTAFFNPHGNI 325 (566)
T ss_pred EECCCCCEEEEEE-------ecccc--eEEEEcCCCCEeEeCCCCC----------------------ccceEECCCCCE
Confidence 9999999987665 22222 3556666542211111111 124569999998
Q ss_pred EEEEEEeCCeEEEEEEECCCCcEEEecCCCC-CceeEEeeecCCEEEEEEeCC
Q 003886 458 MLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 458 l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~-~~~~~~~s~dg~~l~~~~ss~ 509 (789)
|++.+-..-...+-.+|+.+ .+.|..... +.+...|+|||.+++....+|
T Consensus 326 i~lAGFGNL~G~mEvwDv~n--~K~i~~~~a~~tt~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPN--RKLIAKFKAANTTVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred EEEeecCCCCCceEEEeccc--hhhccccccCCceEEEEcCCCcEEEEEeccc
Confidence 87776544233344446545 223332221 335678999999988776654
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0001 Score=75.74 Aligned_cols=266 Identities=13% Similarity=0.098 Sum_probs=142.2
Q ss_pred EEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeE
Q 003886 113 FSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEK 192 (789)
Q Consensus 113 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~ 192 (789)
|......+..+.....|.+|++.....+.... +....+++....+-++|++++-.++. +..++|.++. .+-
T Consensus 183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~t----LaGs~g~it~~d~d~~~~~~iAas~d--~~~r~Wnvd~---~r~ 253 (459)
T KOG0288|consen 183 FLRNSDTLATGGSDRIIKLWNVLGEKSELIST----LAGSLGNITSIDFDSDNKHVIAASND--KNLRLWNVDS---LRL 253 (459)
T ss_pred EccCcchhhhcchhhhhhhhhcccchhhhhhh----hhccCCCcceeeecCCCceEEeecCC--Cceeeeeccc---hhh
Confidence 33333345566666666666654433222211 11123568889999999998765544 3334444432 211
Q ss_pred EEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCC---CCcCCCCCC--CcceeeCCccccc
Q 003886 193 EFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGS---SDKDCNSWK--GQGDWEEDWGETY 267 (789)
Q Consensus 193 ~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~d~g~~~ 267 (789)
.-.+. ++.+.| ..+.+.-...+++-.+.+.+.+ .|+.......+ ....+.... ..-..+
T Consensus 254 ~~TLs-GHtdkV------t~ak~~~~~~~vVsgs~DRtiK--~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~S------- 317 (459)
T KOG0288|consen 254 RHTLS-GHTDKV------TAAKFKLSHSRVVSGSADRTIK--LWDLQKAYCSKTVLPGSQCNDIVCSISDVIS------- 317 (459)
T ss_pred hhhhc-ccccce------eeehhhccccceeeccccchhh--hhhhhhhheeccccccccccceEecceeeee-------
Confidence 11121 233333 5666777666655555555433 33321111000 000000000 011122
Q ss_pred CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc
Q 003886 268 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (789)
Q Consensus 268 ~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (789)
+--+..|-.||..++..+.. .+....+.++..++||.. |...+ |+..|-++|+
T Consensus 318 -gH~DkkvRfwD~Rs~~~~~s--v~~gg~vtSl~ls~~g~~----lLsss---------------RDdtl~viDl----- 370 (459)
T KOG0288|consen 318 -GHFDKKVRFWDIRSADKTRS--VPLGGRVTSLDLSMDGLE----LLSSS---------------RDDTLKVIDL----- 370 (459)
T ss_pred -cccccceEEEeccCCceeeE--eecCcceeeEeeccCCeE----Eeeec---------------CCCceeeeec-----
Confidence 12334588899877776655 455668889999999998 66554 3336778887
Q ss_pred hhhhhhhhcCCCCCCCeeecCCC-----CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccc
Q 003886 348 EASELELKESSSEDLPVVNLTES-----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK 422 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~~-----~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~ 422 (789)
.+.+++....- ........|||||.+++-.+.+. .+|+|++.+++.......
T Consensus 371 ------------Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg-----------sv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 371 ------------RTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG-----------SVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred ------------ccccEEEEeeccccccccccceeEECCCCceeeeccCCC-----------cEEEEEccCceEEEEecc
Confidence 45555443221 22356789999999998777654 599999988665321111
Q ss_pred eeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 423 ~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
. . +.+ .+....|.|-|+.++ +++......||
T Consensus 428 s----------~--s~~-----aI~s~~W~~sG~~Ll-sadk~~~v~lW 458 (459)
T KOG0288|consen 428 S----------T--SNA-----AITSLSWNPSGSGLL-SADKQKAVTLW 458 (459)
T ss_pred C----------C--CCc-----ceEEEEEcCCCchhh-cccCCcceEec
Confidence 1 0 111 245678999888774 33334444444
|
|
| >KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00029 Score=67.42 Aligned_cols=92 Identities=21% Similarity=0.200 Sum_probs=68.1
Q ss_pred HHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHh---------CCCceeEEEEeCCccchhhhhcCCCCCcchhhhh
Q 003886 655 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ---------APDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (789)
Q Consensus 655 ~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~---------~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~ 725 (789)
+....+|+.++|-.| ||+|+|.|+.++..+++. .| .|+-+|+.+|+.-...
T Consensus 92 l~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P-~~kF~v~~SGf~~~~~--------------- 151 (230)
T KOG2551|consen 92 LEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQP-PFKFAVFISGFKFPSK--------------- 151 (230)
T ss_pred HHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCC-CeEEEEEEecCCCCcc---------------
Confidence 445566777787777 899999999999998872 12 3678888777642100
Q ss_pred ccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
. .. + ..+...+++|.|-+.|+.|.+||..-+..|++..+++
T Consensus 152 ------------~--~~-~-------~~~~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a 192 (230)
T KOG2551|consen 152 ------------K--LD-E-------SAYKRPLSTPSLHIFGETDTIVPSERSEQLAESFKDA 192 (230)
T ss_pred ------------h--hh-h-------hhhccCCCCCeeEEecccceeecchHHHHHHHhcCCC
Confidence 0 00 0 1234578999999999999999999999999998764
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00021 Score=68.80 Aligned_cols=133 Identities=9% Similarity=0.107 Sum_probs=82.7
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
..+.+||..+|+..+- +.-...+.+...|+||+. +-.+.- +.|--+|.
T Consensus 165 ~tVRLWD~rTgt~v~s--L~~~s~VtSlEvs~dG~i-----lTia~g---------------ssV~Fwda---------- 212 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQS--LEFNSPVTSLEVSQDGRI-----LTIAYG---------------SSVKFWDA---------- 212 (334)
T ss_pred CceEEEEeccCcEEEE--EecCCCCcceeeccCCCE-----EEEecC---------------ceeEEecc----------
Confidence 4678899999876554 344557789999999984 444421 13444444
Q ss_pred hhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcc-cceeeEEeeee
Q 003886 353 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL-EKIVDVIPVVQ 431 (789)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t-~~~~~v~~~~~ 431 (789)
.+-....-..-...+.+.+.+|+-.. |+... ....+|++|..+++.+..- .+.
T Consensus 213 -------ksf~~lKs~k~P~nV~SASL~P~k~~--fVaGg---------ed~~~~kfDy~TgeEi~~~nkgh-------- 266 (334)
T KOG0278|consen 213 -------KSFGLLKSYKMPCNVESASLHPKKEF--FVAGG---------EDFKVYKFDYNTGEEIGSYNKGH-------- 266 (334)
T ss_pred -------ccccceeeccCccccccccccCCCce--EEecC---------cceEEEEEeccCCceeeecccCC--------
Confidence 11111111112334667788998643 33322 1246899999998775331 111
Q ss_pred ccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003886 432 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
| ..+..+.|+|||. +|.+++.+|...||.+..
T Consensus 267 ------~-----gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 267 ------F-----GPVHCVRFSPDGE-LYASGSEDGTIRLWQTTP 298 (334)
T ss_pred ------C-----CceEEEEECCCCc-eeeccCCCceEEEEEecC
Confidence 1 1345678999996 889999999999998875
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0028 Score=67.29 Aligned_cols=241 Identities=16% Similarity=0.104 Sum_probs=137.1
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEE--ec-CCCccccccCCCcccceeecCCC--CEEEEEeecCCCC
Q 003886 158 AVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEF--HV-PQTVHGSVYADGWFEGISWNSDE--TLIAYVAEEPSPS 232 (789)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~--~~-~~~~~g~v~~d~~~~~~~wSpDg--~~la~~~~~~~~~ 232 (789)
...||-|.+++|.+.... ++....++...+.- .+ +.++ ..++|||.| .-|||-......
T Consensus 136 ~~k~s~~D~y~ARvv~~s-----l~i~e~t~n~~~~p~~~lr~~gi----------~dFsisP~~n~~~la~~tPEk~~- 199 (561)
T COG5354 136 VLKFSIDDKYVARVVGSS-----LYIHEITDNIEEHPFKNLRPVGI----------LDFSISPEGNHDELAYWTPEKLN- 199 (561)
T ss_pred eeeeeecchhhhhhccCe-----EEEEecCCccccCchhhccccce----------eeEEecCCCCCceEEEEccccCC-
Confidence 567999999999885543 33333233222110 11 1222 789999975 346665433211
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (789)
...++-++.+..+.+.... .--..+--++.|.+.|+.
T Consensus 200 --------------------------------------kpa~~~i~sIp~~s~l~tk-~lfk~~~~qLkW~~~g~~---- 236 (561)
T COG5354 200 --------------------------------------KPAMVRILSIPKNSVLVTK-NLFKVSGVQLKWQVLGKY---- 236 (561)
T ss_pred --------------------------------------CCcEEEEEEccCCCeeeee-eeEeecccEEEEecCCce----
Confidence 2245555665555444332 222334558899999999
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
|.+...++. +.+-.| -..+.||++++ ....++..-.-.+.+....|+|+++.++.++
T Consensus 237 ll~l~~t~~--ksnKsy--fgesnLyl~~~-----------------~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~-- 293 (561)
T COG5354 237 LLVLVMTHT--KSNKSY--FGESNLYLLRI-----------------TERSIPVEKDLKDPVHDFTWEPLSSRFAVIS-- 293 (561)
T ss_pred EEEEEEEee--ecccce--eccceEEEEee-----------------cccccceeccccccceeeeecccCCceeEEe--
Confidence 888765443 222211 23468999998 3233322223356688899999999999988
Q ss_pred CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (789)
|++.. .+-.+|+.++-.-.+... --..+.|+|.++++++.+-..-..++-.
T Consensus 294 -----g~~pa--~~s~~~lr~Nl~~~~Pe~----------------------~rNT~~fsp~~r~il~agF~nl~gni~i 344 (561)
T COG5354 294 -----GYMPA--SVSVFDLRGNLRFYFPEQ----------------------KRNTIFFSPHERYILFAGFDNLQGNIEI 344 (561)
T ss_pred -----ccccc--ceeecccccceEEecCCc----------------------ccccccccCcccEEEEecCCccccceEE
Confidence 22222 355566655311000000 1135679999999988765554556666
Q ss_pred EECCCCcEEEe-cCCCCCceeEEeeecCCEEEEEEeCCC
Q 003886 473 VNVSSGELLRI-TPAESNFSWSLLTLDGDNIIAVSSSPV 510 (789)
Q Consensus 473 ~dl~tg~~~~l-t~~~~~~~~~~~s~dg~~l~~~~ss~~ 510 (789)
++.. |+...+ +......+...|+||+..+.....++.
T Consensus 345 ~~~~-~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 345 FDPA-GRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred eccC-CceEEEEEeecCCceEeeccCCceEEEecCCCcc
Confidence 6764 444444 222223455679999987766655554
|
|
| >COG0627 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.7e-05 Score=80.18 Aligned_cols=120 Identities=16% Similarity=0.133 Sum_probs=72.4
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhH---HHHHHHHHCCcEEEEEcCC--------------CC-CCCCchhhccCCCCCCc
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYS---KSLAFLSSVGYSLLIVNYR--------------GS-LGFGEEALQSLPGKVGS 649 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~---~~~~~la~~Gy~V~~~d~r--------------Gs-~G~G~~~~~~~~~~~~~ 649 (789)
.+++.|+++++||-... .+.+. ..-......|++++++|-. |. .|+-..+.... ...+.
T Consensus 50 m~~~ipV~~~l~G~t~~--~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~-~~~~~ 126 (316)
T COG0627 50 MGRDIPVLYLLSGLTCN--EPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPP-WASGP 126 (316)
T ss_pred cCCCCCEEEEeCCCCCC--CCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCc-cccCc
Confidence 46789999999994432 22221 1233556788999887432 11 11211121110 01111
Q ss_pred ccHHHHH-HHHH-HHHHcCCCCC--ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh
Q 003886 650 QDVNDVL-TAID-HVIDMGLANP--SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (789)
Q Consensus 650 ~~~~D~~-~~i~-~l~~~~~~d~--~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~ 710 (789)
...++.+ .-+- .+.+....+. ++.+|+||||||+-|+.+|.++|++|+.+.+.+|+.+...
T Consensus 127 ~q~~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~ 191 (316)
T COG0627 127 YQWETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSS 191 (316)
T ss_pred cchhHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccc
Confidence 2333322 2222 2223333444 3899999999999999999999999999999999988653
|
|
| >KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00034 Score=71.49 Aligned_cols=106 Identities=22% Similarity=0.223 Sum_probs=68.8
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHH-HCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcC
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 666 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la-~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 666 (789)
...+.|.++++||--++ ...|......|+ ..|-.|+++|.|- +|.+..... .-.....+|+...++.....
T Consensus 48 ~~~~~Pp~i~lHGl~GS--~~Nw~sv~k~Ls~~l~~~v~~vd~Rn---HG~Sp~~~~--h~~~~ma~dv~~Fi~~v~~~- 119 (315)
T KOG2382|consen 48 NLERAPPAIILHGLLGS--KENWRSVAKNLSRKLGRDVYAVDVRN---HGSSPKITV--HNYEAMAEDVKLFIDGVGGS- 119 (315)
T ss_pred ccCCCCceEEecccccC--CCCHHHHHHHhcccccCceEEEeccc---CCCCccccc--cCHHHHHHHHHHHHHHcccc-
Confidence 45678999999996664 467776666666 4678999999996 444432211 11222245555555554432
Q ss_pred CCCCccEEEEEcCccH-HHHHHHHHhCCCceeEEEEe
Q 003886 667 LANPSKVTVVGGSHGG-FLTTHLIGQAPDKFVAAAAR 702 (789)
Q Consensus 667 ~~d~~rv~l~G~S~GG-~~a~~~~~~~p~~~~a~v~~ 702 (789)
.-..++.++|||||| -+++..+...|+++..+|+.
T Consensus 120 -~~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~ 155 (315)
T KOG2382|consen 120 -TRLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVE 155 (315)
T ss_pred -cccCCceecccCcchHHHHHHHHHhcCcccceeEEE
Confidence 234678999999999 66666666778877766654
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00013 Score=74.90 Aligned_cols=269 Identities=12% Similarity=0.104 Sum_probs=142.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
+.+....|-++...|+.. +...++.+| ..++.......-.+..|.+ ..+.+-+|++++.-.+.+....
T Consensus 176 gev~~v~~l~~sdtlatg-----g~Dr~Ik~W~v~~~k~~~~~tLaGs~g~i------t~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 176 GEVHDVEFLRNSDTLATG-----GSDRIIKLWNVLGEKSELISTLAGSLGNI------TSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred cccceeEEccCcchhhhc-----chhhhhhhhhcccchhhhhhhhhccCCCc------ceeeecCCCceEEeecCCCcee
Confidence 456677888887777753 333467777 3332222222112222333 7889999999988777766443
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (789)
.|+.........+..|..-.....|...--....+..+..|..||+..+....- ......+..++-+ ..
T Consensus 245 --~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt--~l~~S~cnDI~~~---~~---- 313 (459)
T KOG0288|consen 245 --LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKT--VLPGSQCNDIVCS---IS---- 313 (459)
T ss_pred --eeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecc--ccccccccceEec---ce----
Confidence 444332222222222222111111111111123344556777788776543222 1111223344443 12
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
.++.+. .+..|..+|. .+...+.--+..+-+.+...|+||..|...+.+
T Consensus 314 ~~~SgH--------------~DkkvRfwD~-----------------Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRD 362 (459)
T KOG0288|consen 314 DVISGH--------------FDKKVRFWDI-----------------RSADKTRSVPLGGRVTSLDLSMDGLELLSSSRD 362 (459)
T ss_pred eeeecc--------------cccceEEEec-----------------cCCceeeEeecCcceeeEeeccCCeEEeeecCC
Confidence 344431 2235777886 334444333344578899999999998776544
Q ss_pred CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCcccccc-CCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS-SILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~-~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
+ .|-++|+.+.+.+..... +|..+. ......||||++++. .+ .....+|
T Consensus 363 d-----------tl~viDlRt~eI~~~~sA----------------~g~k~asDwtrvvfSpd~~Yva-AG--S~dgsv~ 412 (459)
T KOG0288|consen 363 D-----------TLKVIDLRTKEIRQTFSA----------------EGFKCASDWTRVVFSPDGSYVA-AG--SADGSVY 412 (459)
T ss_pred C-----------ceeeeecccccEEEEeec----------------cccccccccceeEECCCCceee-ec--cCCCcEE
Confidence 3 478888877555421111 111111 235778999999654 32 3344677
Q ss_pred EEECCCCcEEEecCCCC-C--ceeEEeeecCCEEEEE
Q 003886 472 SVNVSSGELLRITPAES-N--FSWSLLTLDGDNIIAV 505 (789)
Q Consensus 472 ~~dl~tg~~~~lt~~~~-~--~~~~~~s~dg~~l~~~ 505 (789)
.+++.+|+++.+....+ . +.-..|++.|..++..
T Consensus 413 iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 413 IWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred EEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 77888999987755443 2 3334666666665543
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.036 Score=68.26 Aligned_cols=132 Identities=12% Similarity=0.089 Sum_probs=67.9
Q ss_pred cCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCccccee----eEEeeeeccCCCCCccccccCCCCC
Q 003886 374 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV----DVIPVVQCAEGDCFPGLYSSSILSN 449 (789)
Q Consensus 374 ~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~----~v~~~~~~~~~~~f~g~~~~~~~~~ 449 (789)
....+|+|||++|++.... ..+|+++|+.+++...+..+.. ....+.. .+..-..........+
T Consensus 742 P~GIavspdG~~LYVADs~----------n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~--~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSE----------SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD--HDGVGSEVLLQHPLGV 809 (1057)
T ss_pred ccEEEEeCCCCEEEEEECC----------CCeEEEEECCCCcEEEEEecccccCcccccccC--CCCchhhhhccCCcee
Confidence 4457899999987655432 3579999988755321111000 0000000 0000000001123466
Q ss_pred ccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC--------------CceeEEeeecCCEEEEEEeCCCCCCeE
Q 003886 450 PWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--------------NFSWSLLTLDGDNIIAVSSSPVDVPQV 515 (789)
Q Consensus 450 ~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~--------------~~~~~~~s~dg~~l~~~~ss~~~p~~i 515 (789)
.+++||+ ||++. .+...|.++|.+++.+..+..... ......++++|+ ++.+ .+.+ ..|
T Consensus 810 avd~dG~-LYVAD--s~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVa-Dt~N--n~I 882 (1057)
T PLN02919 810 LCAKDGQ-IYVAD--SYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVA-DTNN--SLI 882 (1057)
T ss_pred eEeCCCc-EEEEE--CCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEE-ECCC--CEE
Confidence 7889997 66553 334567778888888776643210 112346677775 4333 3322 247
Q ss_pred EEEeecccC
Q 003886 516 KYGYFVDKA 524 (789)
Q Consensus 516 ~~~~~~~~~ 524 (789)
.++++.+++
T Consensus 883 rvid~~~~~ 891 (1057)
T PLN02919 883 RYLDLNKGE 891 (1057)
T ss_pred EEEECCCCc
Confidence 777776543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0026 Score=67.55 Aligned_cols=245 Identities=15% Similarity=0.173 Sum_probs=137.7
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecC-CCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
+....|||-|++|++....+ ..+|.+....+++... ..+ ..+.+||.|+.|..-...+.. .
T Consensus 35 ~~~~~~SP~G~~l~~~~~~~------V~~~~g~~~~~l~~~~~~~V----------~~~~fSP~~kYL~tw~~~pi~-~- 96 (561)
T COG5354 35 VAYVSESPLGTYLFSEHAAG------VECWGGPSKAKLVRFRHPDV----------KYLDFSPNEKYLVTWSREPII-E- 96 (561)
T ss_pred hhheeecCcchheehhhccc------eEEccccchhheeeeecCCc----------eecccCcccceeeeeccCCcc-C-
Confidence 66788999999998754433 6677433323444432 233 678899999998765443321 0
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEecc-CCCCCCccc-eEEEeeCCCCCccE
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVG-QVVWAPLNEGLHQY 312 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~-~~~wSPDg~~~~~~ 312 (789)
+++ ...+-| ..+++++||..+|.+..-. ..+...... -+.||-|.+.
T Consensus 97 -------------pe~-------e~sp~~-------~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y---- 145 (561)
T COG5354 97 -------------PEI-------EISPFT-------SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKY---- 145 (561)
T ss_pred -------------hhh-------ccCCcc-------ccCceeEEeccCceeEeeccccCCcccccceeeeeecchh----
Confidence 000 011111 2358999999999765431 112221122 5689999987
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCC--CCEEEEEe
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPD--GKFLVFLS 390 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpD--G~~la~~s 390 (789)
++.+. ...|+++++. ++........|. ...+....|||. +..|||..
T Consensus 146 ~ARvv----------------~~sl~i~e~t-------------~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~t 194 (561)
T COG5354 146 VARVV----------------GSSLYIHEIT-------------DNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWT 194 (561)
T ss_pred hhhhc----------------cCeEEEEecC-------------CccccCchhhcc--ccceeeEEecCCCCCceEEEEc
Confidence 66653 1267787751 011222233332 234667788886 45677777
Q ss_pred cCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeC-----
Q 003886 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG----- 465 (789)
Q Consensus 391 ~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~----- 465 (789)
.... +...++.++.++.+.. ..+.. +..+ +--.+.|.+.|++|.+....+
T Consensus 195 PEk~------~kpa~~~i~sIp~~s~-l~tk~---lfk~---------------~~~qLkW~~~g~~ll~l~~t~~ksnK 249 (561)
T COG5354 195 PEKL------NKPAMVRILSIPKNSV-LVTKN---LFKV---------------SGVQLKWQVLGKYLLVLVMTHTKSNK 249 (561)
T ss_pred cccC------CCCcEEEEEEccCCCe-eeeee---eEee---------------cccEEEEecCCceEEEEEEEeeeccc
Confidence 6553 1234566666653222 11111 2221 112567999999998877543
Q ss_pred ---CeEEEEEEECCCCcEEEec-CCCCCceeEEeeecCCEEEEEE
Q 003886 466 ---SSQVIISVNVSSGELLRIT-PAESNFSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 466 ---~~~~l~~~dl~tg~~~~lt-~~~~~~~~~~~s~dg~~l~~~~ 506 (789)
|..+||.+++.... .++. ...+.+....|.|+++.+..++
T Consensus 250 syfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~ 293 (561)
T COG5354 250 SYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVIS 293 (561)
T ss_pred ceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEe
Confidence 34678888875333 3333 2233344567888998877665
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0011 Score=67.85 Aligned_cols=175 Identities=17% Similarity=0.129 Sum_probs=95.6
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
..+++|+||+.+|++.... ....|++....+.....+
T Consensus 27 ~s~AvS~dg~~~A~v~~~~-----------------------------------------~~~~L~~~~~~~~~~~~~-- 63 (253)
T PF10647_consen 27 TSPAVSPDGSRVAAVSEGD-----------------------------------------GGRSLYVGPAGGPVRPVL-- 63 (253)
T ss_pred cceEECCCCCeEEEEEEcC-----------------------------------------CCCEEEEEcCCCcceeec--
Confidence 6899999999999987221 346788887554433333
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC
Q 003886 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (789)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (789)
. ......|.|+++|. +.++...... ..++. +... .+.....+.-.
T Consensus 64 -~-g~~l~~PS~d~~g~-----~W~v~~~~~~------------~~~~~-~~~~---------------g~~~~~~v~~~ 108 (253)
T PF10647_consen 64 -T-GGSLTRPSWDPDGW-----VWTVDDGSGG------------VRVVR-DSAS---------------GTGEPVEVDWP 108 (253)
T ss_pred -c-CCccccccccCCCC-----EEEEEcCCCc------------eEEEE-ecCC---------------CcceeEEeccc
Confidence 1 22667899999965 4554422111 11222 2100 11222223222
Q ss_pred -C-CccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC--CC-CCCcccceeeEEeeeeccCCCCCccccccC
Q 003886 371 -I-SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT--NG-NFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 445 (789)
Q Consensus 371 -~-~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~--~~-~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~ 445 (789)
. +.+...++||||+++|++.... +..+|++.-+.. ++ ...++.. ..+.. . . ...
T Consensus 109 ~~~~~I~~l~vSpDG~RvA~v~~~~--------~~~~v~va~V~r~~~g~~~~l~~~-~~~~~---~----~-----~~~ 167 (253)
T PF10647_consen 109 GLRGRITALRVSPDGTRVAVVVEDG--------GGGRVYVAGVVRDGDGVPRRLTGP-RRVAP---P----L-----LSD 167 (253)
T ss_pred ccCCceEEEEECCCCcEEEEEEecC--------CCCeEEEEEEEeCCCCCcceeccc-eEecc---c----c-----cCc
Confidence 1 1678899999999999999765 235677765432 22 1112111 11110 0 0 013
Q ss_pred CCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecC
Q 003886 446 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 485 (789)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~ 485 (789)
+..+.|.++++.+++....+..... .+..+++..+.++.
T Consensus 168 v~~v~W~~~~~L~V~~~~~~~~~~~-~v~~dG~~~~~l~~ 206 (253)
T PF10647_consen 168 VTDVAWSDDSTLVVLGRSAGGPVVR-LVSVDGGPSTPLPS 206 (253)
T ss_pred ceeeeecCCCEEEEEeCCCCCceeE-EEEccCCcccccCC
Confidence 4578899998755444333333333 46666777777633
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0041 Score=68.22 Aligned_cols=157 Identities=15% Similarity=0.162 Sum_probs=98.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CC--ceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QS--QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~--~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
..+.+.++|-+.+.||..+..+ .+++|. .. -.+.+++. +..+.| +++.|++.| +|..+.
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g-----~IEiwN~~~~w~~~~vi~g--~~drsI------E~L~W~e~~-RLFS~g---- 87 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDG-----NIEIWNLSNNWFLEPVIHG--PEDRSI------ESLAWAEGG-RLFSSG---- 87 (691)
T ss_pred cceEEEEEeccCCceeeeccCC-----cEEEEccCCCceeeEEEec--CCCCce------eeEEEccCC-eEEeec----
Confidence 5688999999999999887765 678883 22 23344443 333334 899999544 454431
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003886 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
....|.-||+.+++.+.-. -.....+.+.+.+|.+..
T Consensus 88 ----------------------------------------~sg~i~EwDl~~lk~~~~~-d~~gg~IWsiai~p~~~~-- 124 (691)
T KOG2048|consen 88 ----------------------------------------LSGSITEWDLHTLKQKYNI-DSNGGAIWSIAINPENTI-- 124 (691)
T ss_pred ----------------------------------------CCceEEEEecccCceeEEe-cCCCcceeEEEeCCccce--
Confidence 2356888999888765441 122334566677777765
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe---eecCCCCCccCcceecCCCCEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~Lt~~~~~~~~p~~SpDG~~la 387 (789)
++..+ .+ +.|+.++. ..+.+ +.|-...+.+...+|+|+|.+|+
T Consensus 125 --l~Igc-------------dd--Gvl~~~s~-----------------~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~ 170 (691)
T KOG2048|consen 125 --LAIGC-------------DD--GVLYDFSI-----------------GPDKITYKRSLMRQKSRVLSLSWNPTGTKIA 170 (691)
T ss_pred --EEeec-------------CC--ceEEEEec-----------------CCceEEEEeecccccceEEEEEecCCccEEE
Confidence 55443 22 25666665 33332 22333346688999999999998
Q ss_pred EEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
-.+.+. .|.+||..++..
T Consensus 171 ~Gs~Dg-----------~Iriwd~~~~~t 188 (691)
T KOG2048|consen 171 GGSIDG-----------VIRIWDVKSGQT 188 (691)
T ss_pred ecccCc-----------eEEEEEcCCCce
Confidence 666442 488888776554
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00072 Score=73.02 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=52.0
Q ss_pred CCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCc
Q 003886 360 EDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFP 439 (789)
Q Consensus 360 ~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~ 439 (789)
+.....+|.++.+.++..+|||||+++|.+..+. .|++++..+++.. +..+...
T Consensus 709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg-----------~~rVy~Prs~e~p-v~Eg~gp-------------- 762 (1012)
T KOG1445|consen 709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDG-----------TLRVYEPRSREQP-VYEGKGP-------------- 762 (1012)
T ss_pred hhhhhheeccCcCceeEEEECCCCcceeeeecCc-----------eEEEeCCCCCCCc-cccCCCC--------------
Confidence 3445567888888899999999999999888653 5888887664432 2211110
Q ss_pred cccccCCCCCccccCCCEEEEEEEe
Q 003886 440 GLYSSSILSNPWLSDGCTMLLSSIW 464 (789)
Q Consensus 440 g~~~~~~~~~~ws~Dg~~l~~~~~~ 464 (789)
-...-.++.|.-||+.|++++-.
T Consensus 763 --vgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 763 --VGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred --ccCcceeEEEEecCcEEEEeccc
Confidence 00122366799999988887643
|
|
| >PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00024 Score=72.64 Aligned_cols=111 Identities=15% Similarity=0.220 Sum_probs=74.4
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchh----h-HHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS----Y-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~----~-~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
|+..+.++.+.-+ ..++...|++.-|.+....... . ........+.|..|+.+|||| .|.+-... +
T Consensus 120 D~~~IDt~~I~~~---~a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~fNYpG---Vg~S~G~~---s 190 (365)
T PF05677_consen 120 DGVKIDTMAIHQP---EAKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVFNYPG---VGSSTGPP---S 190 (365)
T ss_pred CCEEEEEEEeeCC---CCCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEECCCc---cccCCCCC---C
Confidence 7888998887522 3466778888877443211100 0 122334457899999999998 33321111 1
Q ss_pred CCcccHHHHHHHHHHHHHcC-CCCCccEEEEEcCccHHHHHHHHHhC
Q 003886 647 VGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQA 692 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~-~~d~~rv~l~G~S~GG~~a~~~~~~~ 692 (789)
. ..-+.|..++++||.++. .+.+++|++.|||.||.++..++.++
T Consensus 191 ~-~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~ 236 (365)
T PF05677_consen 191 R-KDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKE 236 (365)
T ss_pred H-HHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhc
Confidence 1 233788999999999743 37889999999999999998876654
|
|
| >PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00058 Score=73.41 Aligned_cols=107 Identities=18% Similarity=0.294 Sum_probs=66.2
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHH--HHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHc-
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSK--SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM- 665 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~--~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~- 665 (789)
..|.|.||+=.=.+|+..-..|.. ........|+-|+.+-+.-.+. ..+.++|+..+...++++
T Consensus 66 ~~krP~vViDPRAGHGpGIGGFK~dSevG~AL~~GHPvYFV~F~p~P~-------------pgQTl~DV~~ae~~Fv~~V 132 (581)
T PF11339_consen 66 PTKRPFVVIDPRAGHGPGIGGFKPDSEVGVALRAGHPVYFVGFFPEPE-------------PGQTLEDVMRAEAAFVEEV 132 (581)
T ss_pred CCCCCeEEeCCCCCCCCCccCCCcccHHHHHHHcCCCeEEEEecCCCC-------------CCCcHHHHHHHHHHHHHHH
Confidence 457788777643333333333433 2333445688888877643222 234577877665544432
Q ss_pred --CCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEE-EeCCccch
Q 003886 666 --GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA-ARNPLCNL 708 (789)
Q Consensus 666 --~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v-~~~pv~~~ 708 (789)
-.-+..|..|+|-+.||++++.+|+.+|+.+.-+| +.+|+.-+
T Consensus 133 ~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPlsyw 178 (581)
T PF11339_consen 133 AERHPDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLSYW 178 (581)
T ss_pred HHhCCCCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCcccc
Confidence 11233489999999999999999999999887554 45565443
|
Their function is unknown. |
| >PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00014 Score=81.04 Aligned_cols=111 Identities=22% Similarity=0.215 Sum_probs=68.8
Q ss_pred CcEEEEEcCCCCCCCchhhH--HHHHHHH-HCCcEEEEEcCCCCCCCCchhh------ccCCCCCCcccHHHHHHHHHHH
Q 003886 592 DPLIVVLHGGPHSVSLSSYS--KSLAFLS-SVGYSLLIVNYRGSLGFGEEAL------QSLPGKVGSQDVNDVLTAIDHV 662 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~--~~~~~la-~~Gy~V~~~d~rGs~G~G~~~~------~~~~~~~~~~~~~D~~~~i~~l 662 (789)
.|++|++-| -+.. ...+. ..+..|| +.|-.|+++++|- ||++.. +.+.-..-.+.++|+...++++
T Consensus 29 gpifl~~gg-E~~~-~~~~~~~~~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~ 103 (434)
T PF05577_consen 29 GPIFLYIGG-EGPI-EPFWINNGFMWELAKEFGALVVALEHRY---YGKSQPFGDLSTENLRYLTSEQALADLAYFIRYV 103 (434)
T ss_dssp SEEEEEE---SS-H-HHHHHH-HHHHHHHHHHTEEEEEE--TT---STTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHH
T ss_pred CCEEEEECC-CCcc-chhhhcCChHHHHHHHcCCcEEEeehhh---hcCCCCccccchhhHHhcCHHHHHHHHHHHHHHH
Confidence 788888844 3321 11111 1233444 6789999999996 565541 1122222234478888899998
Q ss_pred HHcC-CCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 663 IDMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 663 ~~~~-~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
..+- ..+..+++++|.||||.+++|+-.++|+.|.++++.++++.
T Consensus 104 ~~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 104 KKKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred HHhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 8653 34667999999999999999999999999999999887654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C. |
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00042 Score=68.68 Aligned_cols=265 Identities=13% Similarity=0.084 Sum_probs=138.4
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe---cCCceeEEEecCCCccccc----cC-CCcccceeecCCCCEEEEEe
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQTVHGSV----YA-DGWFEGISWNSDETLIAYVA 226 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~g~v----~~-d~~~~~~~wSpDg~~la~~~ 226 (789)
.....+|||||..+|..+.+. +-.++.+. .....++........+-.| |- -+.+..+.|.|-+.-|+..+
T Consensus 114 ~cR~aafs~DG~lvATGsaD~--SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~s 191 (430)
T KOG0640|consen 114 PCRAAAFSPDGSLVATGSADA--SIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGS 191 (430)
T ss_pred ceeeeeeCCCCcEEEccCCcc--eEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEecc
Confidence 356778999999998754432 11222222 0111222111111111111 11 12347899999999888877
Q ss_pred ecCCCCCCCccCCCCC-CCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCC---CCccceEEE
Q 003886 227 EEPSPSKPTFSLGSTK-GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVW 302 (789)
Q Consensus 227 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~---~~~~~~~~w 302 (789)
.+...+-..|....-+ ..+.+.+. .-.....|.|.+.-.+.+...+.+.++|+++-+.-.-. .|. ...+.++.+
T Consensus 192 rD~tvKlFDfsK~saKrA~K~~qd~-~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsa-nPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 192 RDNTVKLFDFSKTSAKRAFKVFQDT-EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSA-NPDDQHTGAITQVRY 269 (430)
T ss_pred CCCeEEEEecccHHHHHHHHHhhcc-ceeeeEeecCCCceEEEecCCCceeEEeccceeEeeec-CcccccccceeEEEe
Confidence 7765442222211111 11111111 11223456666555667778899999999886543321 222 236779999
Q ss_pred eeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCee-ecC--CCCCccCccee
Q 003886 303 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLT--ESISSAFFPRF 379 (789)
Q Consensus 303 SPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~Lt--~~~~~~~~p~~ 379 (789)
|+.|+ |+.++. .+..|.++|= -++.+. .+. .+...+.+..|
T Consensus 270 s~t~~-----lYvTaS--------------kDG~IklwDG-----------------VS~rCv~t~~~AH~gsevcSa~F 313 (430)
T KOG0640|consen 270 SSTGS-----LYVTAS--------------KDGAIKLWDG-----------------VSNRCVRTIGNAHGGSEVCSAVF 313 (430)
T ss_pred cCCcc-----EEEEec--------------cCCcEEeecc-----------------ccHHHHHHHHhhcCCceeeeEEE
Confidence 99998 666662 2336777773 223322 221 22345888999
Q ss_pred cCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEE
Q 003886 380 SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 459 (789)
Q Consensus 380 SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~ 459 (789)
+.|||+|+....+. -+++|.+.++.......+... .. ... ......|.....+++
T Consensus 314 tkn~kyiLsSG~DS-----------~vkLWEi~t~R~l~~YtGAg~-tg------rq~-------~rtqAvFNhtEdyVl 368 (430)
T KOG0640|consen 314 TKNGKYILSSGKDS-----------TVKLWEISTGRMLKEYTGAGT-TG------RQK-------HRTQAVFNHTEDYVL 368 (430)
T ss_pred ccCCeEEeecCCcc-----------eeeeeeecCCceEEEEecCCc-cc------chh-------hhhhhhhcCccceEE
Confidence 99999987555443 367777777654322111100 00 000 011334554445555
Q ss_pred EEEEeCCeEEEEEEECCCCcEEEecCC
Q 003886 460 LSSIWGSSQVIISVNVSSGELLRITPA 486 (789)
Q Consensus 460 ~~~~~~~~~~l~~~dl~tg~~~~lt~~ 486 (789)
|. ++....++.+|..++....+...
T Consensus 369 ~p--DEas~slcsWdaRtadr~~l~sl 393 (430)
T KOG0640|consen 369 FP--DEASNSLCSWDARTADRVALLSL 393 (430)
T ss_pred cc--ccccCceeeccccchhhhhhccc
Confidence 43 34455788888777766555443
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00085 Score=70.68 Aligned_cols=228 Identities=13% Similarity=0.093 Sum_probs=137.4
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEec---CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWS---QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
+-+.++|-..++++... ..-..+|+ .+....+.+++--. -|..+.....+|||+.|+...+
T Consensus 422 VcAvtIS~~trhVyTgG------kgcVKVWdis~pg~k~PvsqLdcl~-----rdnyiRSckL~pdgrtLivGGe----- 485 (705)
T KOG0639|consen 422 VCAVTISNPTRHVYTGG------KGCVKVWDISQPGNKSPVSQLDCLN-----RDNYIRSCKLLPDGRTLIVGGE----- 485 (705)
T ss_pred EEEEEecCCcceeEecC------CCeEEEeeccCCCCCCccccccccC-----cccceeeeEecCCCceEEeccc-----
Confidence 55677888888875421 12345552 22222232322110 1223478899999999987533
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC-CCCCCccceEEEeeCCCCCcc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~-~~~~~~~~~~~wSPDg~~~~~ 311 (789)
...|-+||+..-..+.-.. +.........+.|||.+
T Consensus 486 ---------------------------------------astlsiWDLAapTprikaeltssapaCyALa~spDak---- 522 (705)
T KOG0639|consen 486 ---------------------------------------ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK---- 522 (705)
T ss_pred ---------------------------------------cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc----
Confidence 2568889998765432111 12223455778999998
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEec
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
+.|..-.+ ..|.++|+. +...++++..+...+....+|+||..|. ...
T Consensus 523 -vcFsccsd--------------GnI~vwDLh----------------nq~~VrqfqGhtDGascIdis~dGtklW-TGG 570 (705)
T KOG0639|consen 523 -VCFSCCSD--------------GNIAVWDLH----------------NQTLVRQFQGHTDGASCIDISKDGTKLW-TGG 570 (705)
T ss_pred -eeeeeccC--------------CcEEEEEcc----------------cceeeecccCCCCCceeEEecCCCceee-cCC
Confidence 78877332 257788873 4456788888877788999999999874 332
Q ss_pred CCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 392 ~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
- .+.+..||+..+...+. .+| .+.+.++...|.+..+.+- .. ..+++
T Consensus 571 l----------DntvRcWDlregrqlqq----------------hdF----~SQIfSLg~cP~~dWlavG-Me--ns~ve 617 (705)
T KOG0639|consen 571 L----------DNTVRCWDLREGRQLQQ----------------HDF----SSQIFSLGYCPTGDWLAVG-ME--NSNVE 617 (705)
T ss_pred C----------ccceeehhhhhhhhhhh----------------hhh----hhhheecccCCCccceeee-cc--cCcEE
Confidence 2 24588999877544211 011 1234566678888877553 22 33456
Q ss_pred EEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEe
Q 003886 472 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 472 ~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s 507 (789)
++.....+..+|.....-+-..-|++.|++++-+.-
T Consensus 618 vlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGk 653 (705)
T KOG0639|consen 618 VLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGK 653 (705)
T ss_pred EEecCCccceeecccccEEEEEEecccCceeeecCc
Confidence 666545555566655543334568888888776543
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0041 Score=63.62 Aligned_cols=108 Identities=13% Similarity=0.026 Sum_probs=60.3
Q ss_pred eEEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCC
Q 003886 98 AWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE 177 (789)
Q Consensus 98 ~~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~ 177 (789)
....+..|+||+.+++... ......|+.... ++....+... .....|+|+|+|...++. +.. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~------~~~~~~L~~~~~---~~~~~~~~~g------~~l~~PS~d~~g~~W~v~-~~~-~ 87 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSE------GDGGRSLYVGPA---GGPVRPVLTG------GSLTRPSWDPDGWVWTVD-DGS-G 87 (253)
T ss_pred cccceEECCCCCeEEEEEE------cCCCCEEEEEcC---CCcceeeccC------CccccccccCCCCEEEEE-cCC-C
Confidence 3556677899999999861 124557777653 2222222211 357789999996554443 322 1
Q ss_pred CCeEEEEecCCcee-EEEecCCCccccccCCCcccceeecCCCCEEEEEeecC
Q 003886 178 SPIQFELWSQSQLE-KEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (789)
Q Consensus 178 ~~~~~~i~~~~~~~-~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~ 229 (789)
...++.-...++.. ..++.+.. .+. +..+.+||||+++|++.+..
T Consensus 88 ~~~~~~~~~~g~~~~~~v~~~~~-~~~------I~~l~vSpDG~RvA~v~~~~ 133 (253)
T PF10647_consen 88 GVRVVRDSASGTGEPVEVDWPGL-RGR------ITALRVSPDGTRVAVVVEDG 133 (253)
T ss_pred ceEEEEecCCCcceeEEeccccc-CCc------eEEEEECCCCcEEEEEEecC
Confidence 11122111223222 22222211 112 37999999999999998754
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00091 Score=70.72 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=47.8
Q ss_pred CCCcccHHHHHHHHHHHHHcCC-C-CCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 646 KVGSQDVNDVLTAIDHVIDMGL-A-NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~-~-d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
++|-...-|++.|+.+++++-. . +.-++.++|+|+|||++..++--.|..|.+++-.++..-
T Consensus 157 N~GIMqAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~ 220 (403)
T PF11144_consen 157 NFGIMQAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYAL 220 (403)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCcccc
Confidence 3444456788888888888622 2 234899999999999999999888999999988776543
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0013 Score=66.86 Aligned_cols=193 Identities=15% Similarity=0.132 Sum_probs=110.3
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
.+..|.++|-....+..|+ ....-.+..++|-|-+.. -+.++- +.|+ -||..+-.......
T Consensus 118 nddvVriy~ksst~pt~Lk-s~sQrnvtclawRPlsas----elavgC-----r~gI--------ciW~~s~tln~~r~- 178 (445)
T KOG2139|consen 118 NDDVVRIYDKSSTCPTKLK-SVSQRNVTCLAWRPLSAS----ELAVGC-----RAGI--------CIWSDSRTLNANRN- 178 (445)
T ss_pred cCcEEEEeccCCCCCceec-chhhcceeEEEeccCCcc----eeeeee-----ccee--------EEEEcCcccccccc-
Confidence 3456677777776666664 344456788999998876 444442 1121 24444421100000
Q ss_pred hhhhhcCCCCCCCeeecCCCC--CccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEe
Q 003886 351 ELELKESSSEDLPVVNLTESI--SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIP 428 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~--~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~ 428 (789)
. .--+...-++..+. ..+++.+|.+||..|+-.+-. ..+|.+||.+++...++...
T Consensus 179 ~------~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~g----------sssi~iWdpdtg~~~pL~~~------ 236 (445)
T KOG2139|consen 179 I------RMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFG----------SSSIMIWDPDTGQKIPLIPK------ 236 (445)
T ss_pred c------ccccccchhheeCCCCceeeEEEEcCCCCEEeecccC----------cceEEEEcCCCCCccccccc------
Confidence 0 00011122222232 358899999999998876643 35799999998877654310
Q ss_pred eeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeC
Q 003886 429 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (789)
Q Consensus 429 ~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss 508 (789)
.. .++..+.|||||..| |.+.-++.-.||..+-.--+.+.++.. +.+...-++|+|..|+|+++.
T Consensus 237 --------gl-----gg~slLkwSPdgd~l-faAt~davfrlw~e~q~wt~erw~lgs-grvqtacWspcGsfLLf~~sg 301 (445)
T KOG2139|consen 237 --------GL-----GGFSLLKWSPDGDVL-FAATCDAVFRLWQENQSWTKERWILGS-GRVQTACWSPCGSFLLFACSG 301 (445)
T ss_pred --------CC-----CceeeEEEcCCCCEE-EEecccceeeeehhcccceecceeccC-CceeeeeecCCCCEEEEEEcC
Confidence 11 134467899999966 555666666677433211122223222 234456799999999999876
Q ss_pred CCCCCeEEEEeecc
Q 003886 509 PVDVPQVKYGYFVD 522 (789)
Q Consensus 509 ~~~p~~i~~~~~~~ 522 (789)
... +|.+....
T Consensus 302 sp~---lysl~f~~ 312 (445)
T KOG2139|consen 302 SPR---LYSLTFDG 312 (445)
T ss_pred Cce---EEEEeecC
Confidence 543 77776553
|
|
| >COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0012 Score=61.12 Aligned_cols=108 Identities=13% Similarity=0.112 Sum_probs=75.6
Q ss_pred CCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhh
Q 003886 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (789)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~ 725 (789)
+|-....+|.++.++..+.. . ++.+.|++||.|+.++++++.+....++++.+++|..--...
T Consensus 37 ~w~~P~~~dWi~~l~~~v~a--~-~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~-------------- 99 (181)
T COG3545 37 DWEAPVLDDWIARLEKEVNA--A-EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPE-------------- 99 (181)
T ss_pred CCCCCCHHHHHHHHHHHHhc--c-CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCccccc--------------
Confidence 45556688888887766654 2 445999999999999999998877789999999986310000
Q ss_pred ccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
........++|.. ...+.-|.++++..+|+.|++++++.+.++.-
T Consensus 100 ---------------~~~~~~~tf~~~p-~~~lpfps~vvaSrnDp~~~~~~a~~~a~~wg 144 (181)
T COG3545 100 ---------------IRPKHLMTFDPIP-REPLPFPSVVVASRNDPYVSYEHAEDLANAWG 144 (181)
T ss_pred ---------------cchhhccccCCCc-cccCCCceeEEEecCCCCCCHHHHHHHHHhcc
Confidence 0001111122221 23455689999999999999999999988763
|
|
| >PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00045 Score=71.14 Aligned_cols=110 Identities=20% Similarity=0.291 Sum_probs=73.2
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHH---CCcEEEEEcCCCCCCCCchhhcc-CCCCCCcccHHHHHH-HHHHH---H
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSS---VGYSLLIVNYRGSLGFGEEALQS-LPGKVGSQDVNDVLT-AIDHV---I 663 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~---~Gy~V~~~d~rGs~G~G~~~~~~-~~~~~~~~~~~D~~~-~i~~l---~ 663 (789)
.++|+++.|.|+- ...|..+...|.+ ..|.|+++.+.|... ..... ...+.....++|+++ .++++ +
T Consensus 2 ~~li~~IPGNPGl--v~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~---~~~~~~~~~~~~~~sL~~QI~hk~~~i~~~~ 76 (266)
T PF10230_consen 2 RPLIVFIPGNPGL--VEFYEEFLSALYEKLNPQFEILGISHAGHST---SPSNSKFSPNGRLFSLQDQIEHKIDFIKELI 76 (266)
T ss_pred cEEEEEECCCCCh--HHHHHHHHHHHHHhCCCCCeeEEecCCCCcC---CcccccccCCCCccCHHHHHHHHHHHHHHHh
Confidence 5789999999984 5566667776664 479999999987432 22110 001122334555444 33333 3
Q ss_pred HcCCCCCccEEEEEcCccHHHHHHHHHhCC---CceeEEEEeCCcc
Q 003886 664 DMGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLC 706 (789)
Q Consensus 664 ~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p---~~~~a~v~~~pv~ 706 (789)
........++.++|||.|+|+++.++-+.+ .+++.+++.-|..
T Consensus 77 ~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 77 PQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred hhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 321115688999999999999999999988 6788888888754
|
|
| >PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00033 Score=70.06 Aligned_cols=103 Identities=17% Similarity=0.305 Sum_probs=60.7
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHH--------HHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHH
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFL--------SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVI 663 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~l--------a~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~ 663 (789)
...|||+||..++ ...+......+ ....+.++.+|+.... . ...+..-....+-+..+++++.
T Consensus 4 g~pVlFIhG~~Gs--~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~---s----~~~g~~l~~q~~~~~~~i~~i~ 74 (225)
T PF07819_consen 4 GIPVLFIHGNAGS--YKQVRSLASELQRKALLNDNSSHFDFFTVDFNEEL---S----AFHGRTLQRQAEFLAEAIKYIL 74 (225)
T ss_pred CCEEEEECcCCCC--HhHHHHHHHHHhhhhhhccCccceeEEEeccCccc---c----ccccccHHHHHHHHHHHHHHHH
Confidence 4568899996554 22333222222 1234788999985311 1 1111111122344555666665
Q ss_pred HcC---CCCCccEEEEEcCccHHHHHHHHHhCC---CceeEEEEeC
Q 003886 664 DMG---LANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARN 703 (789)
Q Consensus 664 ~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~p---~~~~a~v~~~ 703 (789)
+.. ....++|.|+||||||.++-.++...+ +.++.+|..+
T Consensus 75 ~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~ 120 (225)
T PF07819_consen 75 ELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLG 120 (225)
T ss_pred HhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEc
Confidence 542 357899999999999999988877543 3677777655
|
This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane |
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0013 Score=72.59 Aligned_cols=154 Identities=14% Similarity=0.199 Sum_probs=100.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
..+.+.+.+||+++|+++.+. ++..+| ..|+..+..- ....+++ ....++|.|..+|....+...
T Consensus 63 d~ita~~l~~d~~~L~~a~rs-----~llrv~~L~tgk~irswK--a~He~Pv------i~ma~~~~g~LlAtggaD~~v 129 (775)
T KOG0319|consen 63 DEITALALTPDEEVLVTASRS-----QLLRVWSLPTGKLIRSWK--AIHEAPV------ITMAFDPTGTLLATGGADGRV 129 (775)
T ss_pred hhhheeeecCCccEEEEeecc-----ceEEEEEcccchHhHhHh--hccCCCe------EEEEEcCCCceEEeccccceE
Confidence 346788999999999887665 478888 4453333221 1122333 578899999777776655543
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCccc--ccCCccCceEEEEEccCCce-EeccCCCCCCccceEEEeeCCCC
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE--TYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~--~~~~~~~~~l~v~d~~~g~~-~~l~~~~~~~~~~~~~wSPDg~~ 308 (789)
+.|+.........+++++...-...|.|+|.. .+++..+..+.+||+.++.. ..+. ......+.+..+++|+..
T Consensus 130 --~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~-~~H~S~vtsL~~~~d~~~ 206 (775)
T KOG0319|consen 130 --KVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTM-ILHKSAVTSLAFSEDSLE 206 (775)
T ss_pred --EEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHH-HhhhhheeeeeeccCCce
Confidence 45654444444555565555556677787743 35666788999999986654 1110 222346778999999998
Q ss_pred CccEEEEEeecCCceeeeeeeeccCCcceEEEec
Q 003886 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 342 (789)
Q Consensus 309 ~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~ 342 (789)
+++++ |+.-++++|+
T Consensus 207 ----~ls~~---------------RDkvi~vwd~ 221 (775)
T KOG0319|consen 207 ----LLSVG---------------RDKVIIVWDL 221 (775)
T ss_pred ----EEEec---------------cCcEEEEeeh
Confidence 88887 4446778887
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0037 Score=63.91 Aligned_cols=178 Identities=17% Similarity=0.178 Sum_probs=92.2
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEe-eCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWA-PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wS-PDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
...|+.++..+++.+.+. .+. ....++. +||+ |+++. . ..+.++|+
T Consensus 21 ~~~i~~~~~~~~~~~~~~-~~~---~~G~~~~~~~g~-----l~v~~-~---------------~~~~~~d~-------- 67 (246)
T PF08450_consen 21 GGRIYRVDPDTGEVEVID-LPG---PNGMAFDRPDGR-----LYVAD-S---------------GGIAVVDP-------- 67 (246)
T ss_dssp TTEEEEEETTTTEEEEEE-SSS---EEEEEEECTTSE-----EEEEE-T---------------TCEEEEET--------
T ss_pred CCEEEEEECCCCeEEEEe-cCC---CceEEEEccCCE-----EEEEE-c---------------CceEEEec--------
Confidence 368999999999877653 222 4455666 6644 44443 1 13555576
Q ss_pred hhhhhcCCCCCCCeeecCCC------CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCccccee
Q 003886 351 ELELKESSSEDLPVVNLTES------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 424 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~------~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~ 424 (789)
++++.+.+... .......++.|||+ |++.......... .....||+++.. ++...+..+
T Consensus 68 ---------~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~--~~~g~v~~~~~~-~~~~~~~~~-- 132 (246)
T PF08450_consen 68 ---------DTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASG--IDPGSVYRIDPD-GKVTVVADG-- 132 (246)
T ss_dssp ---------TTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTC--GGSEEEEEEETT-SEEEEEEEE--
T ss_pred ---------CCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCcccc--ccccceEEECCC-CeEEEEecC--
Confidence 55555544332 22355678999999 6666554321110 011569999876 332211100
Q ss_pred eEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECC--CCcEE---EecC-CCCC--ceeEEee
Q 003886 425 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS--SGELL---RITP-AESN--FSWSLLT 496 (789)
Q Consensus 425 ~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~--tg~~~---~lt~-~~~~--~~~~~~s 496 (789)
+ .+ ...++|+||++.||++....+ .||+++++ ++++. .+.. .... .....++
T Consensus 133 -----~------~~-------pNGi~~s~dg~~lyv~ds~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD 192 (246)
T PF08450_consen 133 -----L------GF-------PNGIAFSPDGKTLYVADSFNG--RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD 192 (246)
T ss_dssp -----E------SS-------EEEEEEETTSSEEEEEETTTT--EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB
T ss_pred -----c------cc-------ccceEECCcchheeecccccc--eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc
Confidence 0 11 236789999999988654444 47777664 44222 2211 1111 2223455
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 497 LDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 497 ~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
.+|+ |+.+.. ....|++++..
T Consensus 193 ~~G~-l~va~~---~~~~I~~~~p~ 213 (246)
T PF08450_consen 193 SDGN-LWVADW---GGGRIVVFDPD 213 (246)
T ss_dssp TTS--EEEEEE---TTTEEEEEETT
T ss_pred CCCC-EEEEEc---CCCEEEEECCC
Confidence 5554 333333 33457777755
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PTZ00472 serine carboxypeptidase (CBP1); Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00052 Score=76.38 Aligned_cols=131 Identities=16% Similarity=0.169 Sum_probs=82.4
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH----------------HHHHHHHCCcEEEEEcCC-CCCCC
Q 003886 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK----------------SLAFLSSVGYSLLIVNYR-GSLGF 635 (789)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~----------------~~~~la~~Gy~V~~~d~r-Gs~G~ 635 (789)
+..+..|++..++ ..+..|+|++++|||++........ +..-|.+. ..++.+|.+ | .|+
T Consensus 60 ~~~lFyw~~~s~~--~~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~-~~~l~iDqP~G-~G~ 135 (462)
T PTZ00472 60 DKHYFYWAFGPRN--GNPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNE-AYVIYVDQPAG-VGF 135 (462)
T ss_pred CceEEEEEEEcCC--CCCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccc-cCeEEEeCCCC-cCc
Confidence 4568888887663 3457899999999999643221100 00012222 578888864 5 555
Q ss_pred CchhhccCCCCCCcccHHHHHHHHHHHHHc-CCCCCccEEEEEcCccHHHHHHHHHhC----------CCceeEEEEeCC
Q 003886 636 GEEALQSLPGKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQA----------PDKFVAAAARNP 704 (789)
Q Consensus 636 G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~~~~~----------p~~~~a~v~~~p 704 (789)
+........ ..-....+|+.++++.+.++ +.....++.|+|+||||..+..++.+- .-.+|++++.+|
T Consensus 136 S~~~~~~~~-~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGNg 214 (462)
T PTZ00472 136 SYADKADYD-HNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGNG 214 (462)
T ss_pred ccCCCCCCC-CChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEecc
Confidence 543211110 11122357777777766654 445568999999999999887776642 124789999999
Q ss_pred ccch
Q 003886 705 LCNL 708 (789)
Q Consensus 705 v~~~ 708 (789)
.++.
T Consensus 215 ~~dp 218 (462)
T PTZ00472 215 LTDP 218 (462)
T ss_pred ccCh
Confidence 8876
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.033 Score=54.68 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=92.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
+.+.....+-+.++++.-+.. +-..+| ..|+.......+..+ ..+.||++|+.+++..+..-.
T Consensus 53 GavW~~Did~~s~~liTGSAD-----~t~kLWDv~tGk~la~~k~~~~V----------k~~~F~~~gn~~l~~tD~~mg 117 (327)
T KOG0643|consen 53 GAVWCCDIDWDSKHLITGSAD-----QTAKLWDVETGKQLATWKTNSPV----------KRVDFSFGGNLILASTDKQMG 117 (327)
T ss_pred ceEEEEEecCCcceeeecccc-----ceeEEEEcCCCcEEEEeecCCee----------EEEeeccCCcEEEEEehhhcC
Confidence 457777788888888765433 346677 355555555554444 689999999999988664310
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEcc-------CCc-eEeccCCCCCCccceEEEe
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-------SGE-VQAVKGIPKSLSVGQVVWA 303 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-------~g~-~~~l~~~~~~~~~~~~~wS 303 (789)
....|.++|+. +.+ ...+ ...+..+..+.|+
T Consensus 118 ---------------------------------------~~~~v~~fdi~~~~~~~~s~ep~~kI--~t~~skit~a~Wg 156 (327)
T KOG0643|consen 118 ---------------------------------------YTCFVSVFDIRDDSSDIDSEEPYLKI--PTPDSKITSALWG 156 (327)
T ss_pred ---------------------------------------cceEEEEEEccCChhhhcccCceEEe--cCCccceeeeeec
Confidence 12445566654 333 3344 2233567788999
Q ss_pred eCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC-Ceee-cCCCCCccCcceecC
Q 003886 304 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVN-LTESISSAFFPRFSP 381 (789)
Q Consensus 304 PDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~-Lt~~~~~~~~p~~Sp 381 (789)
|-|+. |+..- ....|-.+|+ .++ +... -..+...+...++||
T Consensus 157 ~l~~~----ii~Gh---------------e~G~is~~da-----------------~~g~~~v~s~~~h~~~Ind~q~s~ 200 (327)
T KOG0643|consen 157 PLGET----IIAGH---------------EDGSISIYDA-----------------RTGKELVDSDEEHSSKINDLQFSR 200 (327)
T ss_pred ccCCE----EEEec---------------CCCcEEEEEc-----------------ccCceeeechhhhccccccccccC
Confidence 99997 76654 2236778887 333 2222 233445688999999
Q ss_pred CCCEEEEEecC
Q 003886 382 DGKFLVFLSAK 392 (789)
Q Consensus 382 DG~~la~~s~~ 392 (789)
|..+++..+.+
T Consensus 201 d~T~FiT~s~D 211 (327)
T KOG0643|consen 201 DRTYFITGSKD 211 (327)
T ss_pred CcceEEecccC
Confidence 99977665544
|
|
| >TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00079 Score=72.52 Aligned_cols=85 Identities=12% Similarity=0.177 Sum_probs=56.4
Q ss_pred HHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHh
Q 003886 612 KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 691 (789)
Q Consensus 612 ~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~ 691 (789)
...+.|.. |+.|++.|..- ++. .+..-+...++|.+..+..+++. +..+ +.++|+|+||.+++.+++.
T Consensus 121 S~V~~Ll~-g~dVYl~DW~~-p~~-------vp~~~~~f~ldDYi~~l~~~i~~--~G~~-v~l~GvCqgG~~~laa~Al 188 (406)
T TIGR01849 121 STVEALLP-DHDVYITDWVN-ARM-------VPLSAGKFDLEDYIDYLIEFIRF--LGPD-IHVIAVCQPAVPVLAAVAL 188 (406)
T ss_pred HHHHHHhC-CCcEEEEeCCC-CCC-------CchhcCCCCHHHHHHHHHHHHHH--hCCC-CcEEEEchhhHHHHHHHHH
Confidence 35677888 99999999853 111 11122334466666555554444 3344 9999999999997766654
Q ss_pred C-----CCceeEEEEeCCccch
Q 003886 692 A-----PDKFVAAAARNPLCNL 708 (789)
Q Consensus 692 ~-----p~~~~a~v~~~pv~~~ 708 (789)
. |.+++.+++..+..|.
T Consensus 189 ~a~~~~p~~~~sltlm~~PID~ 210 (406)
T TIGR01849 189 MAENEPPAQPRSMTLMGGPIDA 210 (406)
T ss_pred HHhcCCCCCcceEEEEecCccC
Confidence 3 5679999988877665
|
This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some |
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00049 Score=69.82 Aligned_cols=213 Identities=14% Similarity=0.062 Sum_probs=128.6
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc-eeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ-LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
..+...+++-.|++|+..+..- . ..+|+-.+ .+.+-...+..| ..+.+.+-|-|.+|+..+.+.+..
T Consensus 151 ~sv~di~~~a~Gk~l~tcSsDl--~---~~LWd~~~~~~c~ks~~gh~h-------~vS~V~f~P~gd~ilS~srD~tik 218 (406)
T KOG0295|consen 151 DSVFDISFDASGKYLATCSSDL--S---AKLWDFDTFFRCIKSLIGHEH-------GVSSVFFLPLGDHILSCSRDNTIK 218 (406)
T ss_pred cceeEEEEecCccEEEecCCcc--c---hhheeHHHHHHHHHHhcCccc-------ceeeEEEEecCCeeeeccccccee
Confidence 3478899999999998766542 1 44553222 111111111111 127899999999999887776653
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (789)
.|....+-..+....+..|..-..-..|+--..+......|-+|-+++++...+. ......+.-++|.|+.... .
T Consensus 219 --~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l-R~hEh~vEci~wap~~~~~--~ 293 (406)
T KOG0295|consen 219 --AWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL-REHEHPVECIAWAPESSYP--S 293 (406)
T ss_pred --EEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhh-hccccceEEEEecccccCc--c
Confidence 4555455555666677777765555556433334455678999999888554431 2223355667787764320 0
Q ss_pred EEEEeecCCceeeeeee--eccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEE
Q 003886 313 LVFVGWSSETRKLGIKY--CYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~--~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~ 389 (789)
|-+.+-.. .|..+ .-.++..|..+|+ .++. +-.|-.+...+...+|||-||+|+..
T Consensus 294 i~~at~~~----~~~~~l~s~SrDktIk~wdv-----------------~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sc 352 (406)
T KOG0295|consen 294 ISEATGST----NGGQVLGSGSRDKTIKIWDV-----------------STGMCLFTLVGHDNWVRGVAFSPGGKYILSC 352 (406)
T ss_pred hhhccCCC----CCccEEEeecccceEEEEec-----------------cCCeEEEEEecccceeeeeEEcCCCeEEEEE
Confidence 11111100 01111 1134557888887 4454 34677777789999999999999877
Q ss_pred ecCCCCCCCCccccceeEEeecCCCC
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
..+. .|.+||+..+.
T Consensus 353 aDDk-----------tlrvwdl~~~~ 367 (406)
T KOG0295|consen 353 ADDK-----------TLRVWDLKNLQ 367 (406)
T ss_pred ecCC-----------cEEEEEeccce
Confidence 7654 59999997754
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00031 Score=74.58 Aligned_cols=74 Identities=24% Similarity=0.304 Sum_probs=51.3
Q ss_pred CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCC
Q 003886 370 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 449 (789)
Q Consensus 370 ~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~ 449 (789)
..+.+....|||||++||.++.+. -|.++|..+.+...+-. -|..++.-+
T Consensus 289 ~~g~in~f~FS~DG~~LA~VSqDG-----------fLRvF~fdt~eLlg~mk-------------------SYFGGLLCv 338 (636)
T KOG2394|consen 289 GEGSINEFAFSPDGKYLATVSQDG-----------FLRIFDFDTQELLGVMK-------------------SYFGGLLCV 338 (636)
T ss_pred ccccccceeEcCCCceEEEEecCc-----------eEEEeeccHHHHHHHHH-------------------hhccceEEE
Confidence 345678889999999999999774 37788877744321111 144456778
Q ss_pred ccccCCCEEEEEEEeCCeEEEEEEE
Q 003886 450 PWLSDGCTMLLSSIWGSSQVIISVN 474 (789)
Q Consensus 450 ~ws~Dg~~l~~~~~~~~~~~l~~~d 474 (789)
+||||||+| +++..+.-..+|.+.
T Consensus 339 cWSPDGKyI-vtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 339 CWSPDGKYI-VTGGEDDLVTVWSFE 362 (636)
T ss_pred EEcCCccEE-EecCCcceEEEEEec
Confidence 999999966 455555566777764
|
|
| >PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3 | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0001 Score=77.95 Aligned_cols=113 Identities=15% Similarity=0.203 Sum_probs=63.3
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHH-HHHHH-HH--CCcEEEEEcCCC-CCCCCchhhccCCCCCCcccHHHHHHHHHHHH
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSK-SLAFL-SS--VGYSLLIVNYRG-SLGFGEEALQSLPGKVGSQDVNDVLTAIDHVI 663 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~-~~~~l-a~--~Gy~V~~~d~rG-s~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~ 663 (789)
+.+.|++|++||.........|.. ....+ .. ..+.|+++|+.. +.. .+..+.. ....--..+...+..|.
T Consensus 68 n~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~---~Y~~a~~--n~~~vg~~la~~l~~L~ 142 (331)
T PF00151_consen 68 NPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASN---NYPQAVA--NTRLVGRQLAKFLSFLI 142 (331)
T ss_dssp -TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS----HHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccc---cccchhh--hHHHHHHHHHHHHHHHH
Confidence 457899999999766542334433 33434 34 589999999862 111 1110000 00001234455667777
Q ss_pred HcCCCCCccEEEEEcCccHHHHHHHHHhCCC--ceeEEEEeCCcc
Q 003886 664 DMGLANPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNPLC 706 (789)
Q Consensus 664 ~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~--~~~a~v~~~pv~ 706 (789)
+...++.++|.|+|||+||.++..+...... ++..++...|.-
T Consensus 143 ~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAg 187 (331)
T PF00151_consen 143 NNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAG 187 (331)
T ss_dssp HHH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-
T ss_pred hhcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCccc
Confidence 5445889999999999999999998887665 788888877743
|
1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A .... |
| >COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00023 Score=71.76 Aligned_cols=126 Identities=14% Similarity=0.055 Sum_probs=78.1
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCC----cEEEEEcCCCCCCCCchhhccCCCCCCccc
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G----y~V~~~d~rGs~G~G~~~~~~~~~~~~~~~ 651 (789)
....++.|+++....++|+++++||--+.....- ......|...| -++|.+|+--..-+.+++ + .. ..-
T Consensus 82 ~~~vv~lppgy~~~~k~pvl~~~DG~~~~~~g~i-~~~~dsli~~g~i~pai~vgid~~d~~~R~~~~----~-~n-~~~ 154 (299)
T COG2382 82 RRRVVYLPPGYNPLEKYPVLYLQDGQDWFRSGRI-PRILDSLIAAGEIPPAILVGIDYIDVKKRREEL----H-CN-EAY 154 (299)
T ss_pred eeEEEEeCCCCCccccccEEEEeccHHHHhcCCh-HHHHHHHHHcCCCCCceEEecCCCCHHHHHHHh----c-cc-HHH
Confidence 4566888999989999999999998222111111 12334455544 678888863110011111 1 00 001
Q ss_pred HHHHHH-HHHHHHHc-C-CCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccch
Q 003886 652 VNDVLT-AIDHVIDM-G-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708 (789)
Q Consensus 652 ~~D~~~-~i~~l~~~-~-~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~ 708 (789)
...+.. .+=++.++ + .-+.++-+|+|.|+||..+++++.++|++|..++..+|..++
T Consensus 155 ~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~ 214 (299)
T COG2382 155 WRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWW 214 (299)
T ss_pred HHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCcccc
Confidence 222222 23333332 1 135677899999999999999999999999999999998764
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0056 Score=62.59 Aligned_cols=141 Identities=19% Similarity=0.237 Sum_probs=91.6
Q ss_pred ceEEEEEccCCceEec-cCCCCCCccceEEEeeC--CCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchh
Q 003886 273 PSLFVININSGEVQAV-KGIPKSLSVGQVVWAPL--NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l-~~~~~~~~~~~~~wSPD--g~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (789)
.+||++|+.+-++..- ..++ +-..+-.++||. +.+ |+|-+.. ...+|+++|+.
T Consensus 106 e~IyIydI~~MklLhTI~t~~-~n~~gl~AlS~n~~n~y----lAyp~s~-------------t~GdV~l~d~~------ 161 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTP-PNPKGLCALSPNNANCY----LAYPGST-------------TSGDVVLFDTI------ 161 (391)
T ss_pred ccEEEEecccceeehhhhccC-CCccceEeeccCCCCce----EEecCCC-------------CCceEEEEEcc------
Confidence 3599999988765432 2121 122334455554 446 8886522 24478898872
Q ss_pred hhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEee
Q 003886 350 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (789)
Q Consensus 350 ~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~ 429 (789)
+-.....+..+.+.....+|||||+.||..|.+++ -|.++..+.|++.. +.
T Consensus 162 ----------nl~~v~~I~aH~~~lAalafs~~G~llATASeKGT----------VIRVf~v~~G~kl~------eF--- 212 (391)
T KOG2110|consen 162 ----------NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGT----------VIRVFSVPEGQKLY------EF--- 212 (391)
T ss_pred ----------cceeeeEEEecCCceeEEEECCCCCEEEEeccCce----------EEEEEEcCCccEee------ee---
Confidence 23344556678888999999999999999998753 37777777765421 11
Q ss_pred eeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003886 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
-.|.++.++.+++|+||+..|. .++..+..+++.++.
T Consensus 213 --------RRG~~~~~IySL~Fs~ds~~L~-~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 213 --------RRGTYPVSIYSLSFSPDSQFLA-ASSNTETVHIFKLEK 249 (391)
T ss_pred --------eCCceeeEEEEEEECCCCCeEE-EecCCCeEEEEEecc
Confidence 1234556778899999998554 444556778888774
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0023 Score=70.82 Aligned_cols=238 Identities=14% Similarity=0.072 Sum_probs=124.6
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
.+....|-|-+++|+..... |.-++|.+.... ....+. .+.|. ++.++-+||++..+..+.+.+..-+
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~--Gel~vfdlaS~~-l~Eti~---AHdga------IWsi~~~pD~~g~vT~saDktVkfW 481 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKN--GELQVFDLASAS-LVETIR---AHDGA------IWSISLSPDNKGFVTGSADKTVKFW 481 (888)
T ss_pred cEEEEEecCCCceEEEeccC--CceEEEEeehhh-hhhhhh---ccccc------eeeeeecCCCCceEEecCCcEEEEE
Confidence 35556677777777654433 333444444221 111111 22223 3889999999999988777643311
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~ 314 (789)
.|... .+. +..+-.++.+.-.....+ ...+-.+.+||||+. |+
T Consensus 482 df~l~-------------------~~~---------~gt~~k~lsl~~~rtLel-----~ddvL~v~~Spdgk~----La 524 (888)
T KOG0306|consen 482 DFKLV-------------------VSV---------PGTQKKVLSLKHTRTLEL-----EDDVLCVSVSPDGKL----LA 524 (888)
T ss_pred eEEEE-------------------ecc---------CcccceeeeeccceEEec-----cccEEEEEEcCCCcE----EE
Confidence 11100 000 000000122221111122 224557899999997 66
Q ss_pred EEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCC
Q 003886 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 394 (789)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~ 394 (789)
..-- +....+|.+|. -.-...|.++.-.+.....|||++.|+..+.+.+
T Consensus 525 VsLL-------------dnTVkVyflDt------------------lKFflsLYGHkLPV~smDIS~DSklivTgSADKn 573 (888)
T KOG0306|consen 525 VSLL-------------DNTVKVYFLDT------------------LKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN 573 (888)
T ss_pred EEec-------------cCeEEEEEecc------------------eeeeeeecccccceeEEeccCCcCeEEeccCCCc
Confidence 5542 23457888873 2334567777778899999999999998887652
Q ss_pred CCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003886 395 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (789)
Q Consensus 395 ~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~d 474 (789)
+.+|-++=|.-..-.-. ++.++..+.|.|+. +++|+...++... .+|
T Consensus 574 -----------VKiWGLdFGDCHKS~fA-------------------HdDSvm~V~F~P~~-~~FFt~gKD~kvK--qWD 620 (888)
T KOG0306|consen 574 -----------VKIWGLDFGDCHKSFFA-------------------HDDSVMSVQFLPKT-HLFFTCGKDGKVK--QWD 620 (888)
T ss_pred -----------eEEeccccchhhhhhhc-------------------ccCceeEEEEcccc-eeEEEecCcceEE--eec
Confidence 44443332222110001 11244566788865 5878876665444 344
Q ss_pred CCCC-cEEEecCCCCCceeEEeeecCCEEEEE
Q 003886 475 VSSG-ELLRITPAESNFSWSLLTLDGDNIIAV 505 (789)
Q Consensus 475 l~tg-~~~~lt~~~~~~~~~~~s~dg~~l~~~ 505 (789)
-+.= .++.+......+.-...+++|++++..
T Consensus 621 g~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~ 652 (888)
T KOG0306|consen 621 GEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSS 652 (888)
T ss_pred hhhhhhheeeccchheeeeeEEcCCCCeEEec
Confidence 3221 223333333334445677788765543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00049 Score=72.99 Aligned_cols=59 Identities=17% Similarity=0.362 Sum_probs=41.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEE-ecCCCccccccCCCcccceeecCCCCEEEEEee
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~-~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~ 227 (789)
+.+.+-.|||||.-|+.+.+++ ++.+| ..|-++-.+ +....+ .+++|.|++..|+|...
T Consensus 105 ~A~~~gRW~~dGtgLlt~GEDG-----~iKiWSrsGMLRStl~Q~~~~v----------~c~~W~p~S~~vl~c~g 165 (737)
T KOG1524|consen 105 AAISSGRWSPDGAGLLTAGEDG-----VIKIWSRSGMLRSTVVQNEESI----------RCARWAPNSNSIVFCQG 165 (737)
T ss_pred hhhhhcccCCCCceeeeecCCc-----eEEEEeccchHHHHHhhcCcee----------EEEEECCCCCceEEecC
Confidence 4467778999999998875554 88999 444332211 222223 78999999999999743
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.004 Score=65.77 Aligned_cols=232 Identities=12% Similarity=0.053 Sum_probs=132.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
..+++..|--||+.+|-.-. .|.-++|.+....-.+.+-.....+ ....|+|++..++..+.++
T Consensus 69 ~~v~s~~fR~DG~LlaaGD~--sG~V~vfD~k~r~iLR~~~ah~apv----------~~~~f~~~d~t~l~s~sDd---- 132 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAAGDE--SGHVKVFDMKSRVILRQLYAHQAPV----------HVTKFSPQDNTMLVSGSDD---- 132 (487)
T ss_pred cceeEEEeecCCeEEEccCC--cCcEEEeccccHHHHHHHhhccCce----------eEEEecccCCeEEEecCCC----
Confidence 35788899999998875322 1333333311100111111111122 5688999988877665543
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (789)
..+..||+.+..+ ++.-......+...+|+|-... |
T Consensus 133 ---------------------------------------~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~h----i 168 (487)
T KOG0310|consen 133 ---------------------------------------KVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDH----I 168 (487)
T ss_pred ---------------------------------------ceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCe----E
Confidence 3466788888776 3321333447788899999998 9
Q ss_pred EEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 314 ~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
++++.- +..|..+|+.. .+.....| ++...+....+-|.|..|+..+.
T Consensus 169 vvtGsY--------------Dg~vrl~DtR~---------------~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-- 216 (487)
T KOG0310|consen 169 VVTGSY--------------DGKVRLWDTRS---------------LTSRVVEL-NHGCPVESVLALPSGSLIASAGG-- 216 (487)
T ss_pred EEecCC--------------CceEEEEEecc---------------CCceeEEe-cCCCceeeEEEcCCCCEEEEcCC--
Confidence 988721 22466666521 33333333 33446788889999998876552
Q ss_pred CCCCCCccccceeEEeecCCCCCCCcccc-eeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003886 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEK-IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (789)
Q Consensus 394 ~~~~g~~~~~~~L~~~d~~~~~~~~~t~~-~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (789)
+++.+||+.+|+....... ... .+..+.+..|+++| +++.-++..++|.
T Consensus 217 ----------n~vkVWDl~~G~qll~~~~~H~K-------------------tVTcL~l~s~~~rL-lS~sLD~~VKVfd 266 (487)
T KOG0310|consen 217 ----------NSVKVWDLTTGGQLLTSMFNHNK-------------------TVTCLRLASDSTRL-LSGSLDRHVKVFD 266 (487)
T ss_pred ----------CeEEEEEecCCceehhhhhcccc-------------------eEEEEEeecCCceE-eecccccceEEEE
Confidence 4699999987665422211 111 12244566688766 5666666666665
Q ss_pred EECCCCcEE-EecCCCCCceeEEeeecCCEEEEEEeCCC
Q 003886 473 VNVSSGELL-RITPAESNFSWSLLTLDGDNIIAVSSSPV 510 (789)
Q Consensus 473 ~dl~tg~~~-~lt~~~~~~~~~~~s~dg~~l~~~~ss~~ 510 (789)
..+-++. .+.... .+-...+++|+..++.-.++..
T Consensus 267 --~t~~Kvv~s~~~~~-pvLsiavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 267 --TTNYKVVHSWKYPG-PVLSIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred --ccceEEEEeeeccc-ceeeEEecCCCceEEEecccce
Confidence 2232322 222222 2333577888887776665543
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0057 Score=62.92 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=54.7
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCcc
Q 003886 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSA 374 (789)
Q Consensus 296 ~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~ 374 (789)
.++.+.|.|-... +++++- .+..+.++++ .+++ ...|. +...+
T Consensus 133 rVg~V~wHPtA~N----VLlsag--------------~Dn~v~iWnv-----------------~tgeali~l~-hpd~i 176 (472)
T KOG0303|consen 133 RVGLVQWHPTAPN----VLLSAG--------------SDNTVSIWNV-----------------GTGEALITLD-HPDMV 176 (472)
T ss_pred eEEEEeecccchh----hHhhcc--------------CCceEEEEec-----------------cCCceeeecC-CCCeE
Confidence 6788999998877 666551 1236888887 5554 45565 66778
Q ss_pred CcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 375 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 375 ~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
.+..|+-||.+|+..+.+. .|.+||..+++.
T Consensus 177 ~S~sfn~dGs~l~TtckDK-----------kvRv~dpr~~~~ 207 (472)
T KOG0303|consen 177 YSMSFNRDGSLLCTTCKDK-----------KVRVIDPRRGTV 207 (472)
T ss_pred EEEEeccCCceeeeecccc-----------eeEEEcCCCCcE
Confidence 9999999999998877554 589999777554
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0031 Score=70.90 Aligned_cols=91 Identities=18% Similarity=0.136 Sum_probs=58.0
Q ss_pred cccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEeccc
Q 003886 265 ETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 344 (789)
Q Consensus 265 ~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 344 (789)
-.++...+..+.+|++...+...+ ......+..++|.|-... +|.+-. -++.|.++++
T Consensus 382 fLLSSSMDKTVRLWh~~~~~CL~~--F~HndfVTcVaFnPvDDr-----yFiSGS-------------LD~KvRiWsI-- 439 (712)
T KOG0283|consen 382 FLLSSSMDKTVRLWHPGRKECLKV--FSHNDFVTCVAFNPVDDR-----YFISGS-------------LDGKVRLWSI-- 439 (712)
T ss_pred eeEeccccccEEeecCCCcceeeE--EecCCeeEEEEecccCCC-----cEeecc-------------cccceEEeec--
Confidence 344555677888899888777666 455667889999996655 344421 1234555555
Q ss_pred ccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 345 YKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
-..++.--+.-...++...|+|||+..+..+..
T Consensus 440 ---------------~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~ 472 (712)
T KOG0283|consen 440 ---------------SDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFN 472 (712)
T ss_pred ---------------CcCeeEeehhhhhhheeEEeccCCceEEEEEec
Confidence 223333333334568899999999987766544
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0074 Score=67.85 Aligned_cols=131 Identities=17% Similarity=0.137 Sum_probs=79.3
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
...|..||..++....- ..-..+...+..+-.... ++... ....|.++|.
T Consensus 514 ~Gilkfw~f~~k~l~~~--l~l~~~~~~iv~hr~s~l----~a~~~---------------ddf~I~vvD~--------- 563 (910)
T KOG1539|consen 514 DGILKFWDFKKKVLKKS--LRLGSSITGIVYHRVSDL----LAIAL---------------DDFSIRVVDV--------- 563 (910)
T ss_pred cceEEEEecCCcceeee--eccCCCcceeeeeehhhh----hhhhc---------------CceeEEEEEc---------
Confidence 35677888876653211 112223334444444443 33222 2336888997
Q ss_pred hhhhcCCCCCC-CeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeee
Q 003886 352 LELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (789)
Q Consensus 352 ~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~ 430 (789)
.+. -+|.+..+...+....||||||+|+..+++. .|.+||++++.... .+.+-
T Consensus 564 --------~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~-----------tIr~wDlpt~~lID-------~~~vd 617 (910)
T KOG1539|consen 564 --------VTRKVVREFWGHGNRITDMTFSPDGRWLISASMDS-----------TIRTWDLPTGTLID-------GLLVD 617 (910)
T ss_pred --------hhhhhhHHhhccccceeeeEeCCCCcEEEEeecCC-----------cEEEEeccCcceee-------eEecC
Confidence 444 3456666777789999999999999999875 49999999976531 11100
Q ss_pred eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
.....+.+||+|..|..+..+.....||
T Consensus 618 -------------~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 618 -------------SPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred -------------CcceeeEECCCCCEEEEEEecCceEEEE
Confidence 1124678999999776554433334444
|
|
| >COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00049 Score=72.31 Aligned_cols=211 Identities=16% Similarity=0.145 Sum_probs=105.1
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCC--CCCC---CCchhhccCCCCCC
Q 003886 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR--GSLG---FGEEALQSLPGKVG 648 (789)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~r--Gs~G---~G~~~~~~~~~~~~ 648 (789)
..+.+.++.|......+++|.+++.||........ ......++..++.++..+.. |..+ +|............
T Consensus 31 ~~~~~~l~~p~~~~~~~~~p~v~~~h~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 108 (299)
T COG1073 31 IALAAVLHLPPSGNEEKKLPAVVFLHGFGSSKEQS--LGYAVLLAEKGYRVLAGDASLFGESGGDPRGLADSEGYAEDFS 108 (299)
T ss_pred ceeeeEEEecCCCCccccCceEEeccCccccccCc--chHHHHhhhceeEEeeeccccccccccccccccCccccccccc
Confidence 56788898887544447899999999966543222 22566788899998888751 1110 01100000000000
Q ss_pred -cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCC---CceeEEEEeCCccchhhhhcCCC----CC--
Q 003886 649 -SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCNLALMVGTTD----IP-- 718 (789)
Q Consensus 649 -~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p---~~~~a~v~~~pv~~~~~~~~~~~----~~-- 718 (789)
.....+....+..-........++....|.+.|+..+...+...+ +..+.++...+.-.......... ..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~g~~~~~~~~~~~~~~~~~~ 188 (299)
T COG1073 109 AAVLLLLSEGVLDKDYRLLGASLGPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGESLGGALALLLLGANPELAREL 188 (299)
T ss_pred hhheeeeccccccHHHHHHhhhcCcceEEEEEeeccchHHHhhcchhHHHhhcccceeeccCceeeccccccchHHHHhh
Confidence 000000011111100111123367888888888888887776654 22222222222111111100000 00
Q ss_pred -cchhhhh-ccCc-cccccCCCCChhhHHHHHhcCccccCCCCC-CCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 719 -DWCYVES-YGSK-GKDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 719 -~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.+..... +... ............ ...+...++...+.++. +|+|++||.+|..||..++..++++.+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~ 260 (299)
T COG1073 189 IDYLITPGGFAPLPAPEAPLDTLPLR-AVLLLLLDPFDDAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARE 260 (299)
T ss_pred hhhhccCCCCCCCCcccccccccccc-hhhhccCcchhhHhhcCCcceEEEecCCCcccchhhhHHHHhhhcc
Confidence 0000000 0000 000011111112 33455666667777777 7999999999999999999999998765
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.005 Score=62.71 Aligned_cols=251 Identities=16% Similarity=0.183 Sum_probs=142.4
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
.+...-+.|+--.++..++.. -+.+| ..|+.++-+. +...++ ..++++.-|+.||-.+.+
T Consensus 110 ~vt~v~~hp~~~~v~~as~d~-----tikv~D~~tg~~e~~Lr---GHt~sv------~di~~~a~Gk~l~tcSsD---- 171 (406)
T KOG0295|consen 110 SVTRVIFHPSEALVVSASEDA-----TIKVFDTETGELERSLR---GHTDSV------FDISFDASGKYLATCSSD---- 171 (406)
T ss_pred ceeeeeeccCceEEEEecCCc-----eEEEEEccchhhhhhhh---ccccce------eEEEEecCccEEEecCCc----
Confidence 355566788754444433332 34445 3455432222 222223 689999999888876443
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCC--ceEeccCCCCCCccceEEEeeCCCCCc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG--EVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g--~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
-.+.+||.++- ..+.+ ...+..+..+.|-|-|..
T Consensus 172 ----------------------------------------l~~~LWd~~~~~~c~ks~--~gh~h~vS~V~f~P~gd~-- 207 (406)
T KOG0295|consen 172 ----------------------------------------LSAKLWDFDTFFRCIKSL--IGHEHGVSSVFFLPLGDH-- 207 (406)
T ss_pred ----------------------------------------cchhheeHHHHHHHHHHh--cCcccceeeEEEEecCCe--
Confidence 22667777652 22333 344557789999999988
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~ 389 (789)
|+..+ ++..|..+++ +++. ..+++.+...+...+.+-||..+|-.
T Consensus 208 --ilS~s---------------rD~tik~We~-----------------~tg~cv~t~~~h~ewvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 208 --ILSCS---------------RDNTIKAWEC-----------------DTGYCVKTFPGHSEWVRMVRVNQDGTIIASC 253 (406)
T ss_pred --eeecc---------------cccceeEEec-----------------ccceeEEeccCchHhEEEEEecCCeeEEEec
Confidence 87766 3446778887 4554 56777777788889999999988776
Q ss_pred ecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEE
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (789)
+++. +|.+|-+.+++-+.+.....-++..+.-..+...| ++....=+.||..+.++.+++....
T Consensus 254 s~dq-----------tl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~-----~i~~at~~~~~~~~l~s~SrDktIk 317 (406)
T KOG0295|consen 254 SNDQ-----------TLRVWVVATKQCKAELREHEHPVECIAWAPESSYP-----SISEATGSTNGGQVLGSGSRDKTIK 317 (406)
T ss_pred CCCc-----------eEEEEEeccchhhhhhhccccceEEEEecccccCc-----chhhccCCCCCccEEEeecccceEE
Confidence 6543 57777766653332222222122211111111122 1111112234556777777777777
Q ss_pred EEEEECCCCcEEE-ecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 470 IISVNVSSGELLR-ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 470 l~~~dl~tg~~~~-lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
+| |+.+|...- |...+..+...+|+|.|++|+ ++.+..+ +-+.|+...
T Consensus 318 ~w--dv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~-ScaDDkt---lrvwdl~~~ 366 (406)
T KOG0295|consen 318 IW--DVSTGMCLFTLVGHDNWVRGVAFSPGGKYIL-SCADDKT---LRVWDLKNL 366 (406)
T ss_pred EE--eccCCeEEEEEecccceeeeeEEcCCCeEEE-EEecCCc---EEEEEeccc
Confidence 66 555776433 223333455568888888765 4444444 556666544
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.048 Score=59.55 Aligned_cols=187 Identities=13% Similarity=0.073 Sum_probs=111.6
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
..+.++|..+.+...- .........++++||++. +|+++... +...++.+|.
T Consensus 96 ~~v~vid~~~~~~~~~--~~vG~~P~~~~~~~~~~~-----vYV~n~~~-----------~~~~vsvid~---------- 147 (381)
T COG3391 96 NTVSVIDTATNTVLGS--IPVGLGPVGLAVDPDGKY-----VYVANAGN-----------GNNTVSVIDA---------- 147 (381)
T ss_pred CeEEEEcCcccceeeE--eeeccCCceEEECCCCCE-----EEEEeccc-----------CCceEEEEeC----------
Confidence 6788888666554433 222336678999999997 44553211 2346888886
Q ss_pred hhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeec
Q 003886 353 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC 432 (789)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~ 432 (789)
.+................+++|||++++..... .+.|.++|..+..... . .....+.+
T Consensus 148 -------~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~----------~~~v~vi~~~~~~v~~-~-~~~~~~~~--- 205 (381)
T COG3391 148 -------ATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSD----------DNTVSVIDTSGNSVVR-G-SVGSLVGV--- 205 (381)
T ss_pred -------CCCeEEEEEecCCCcceEEECCCCCeEEEEecC----------CCeEEEEeCCCcceec-c-cccccccc---
Confidence 444433222211123788999999987655522 3568999965543321 1 00001111
Q ss_pred cCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC--CceeEEeeecCCEEEEEEeCCC
Q 003886 433 AEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIAVSSSPV 510 (789)
Q Consensus 433 ~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~--~~~~~~~s~dg~~l~~~~ss~~ 510 (789)
+ .......+++||.++|+.-.......+..+|..++.+........ .......+|+|+.++.....
T Consensus 206 -----~-----~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~-- 273 (381)
T COG3391 206 -----G-----TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ-- 273 (381)
T ss_pred -----C-----CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC--
Confidence 1 123466789999988877655545688999999988877522211 12335788899887766555
Q ss_pred CCCeEEEEeecc
Q 003886 511 DVPQVKYGYFVD 522 (789)
Q Consensus 511 ~p~~i~~~~~~~ 522 (789)
...++.++...
T Consensus 274 -~~~V~vid~~~ 284 (381)
T COG3391 274 -GGTVSVIDGAT 284 (381)
T ss_pred -CCeEEEEeCCC
Confidence 44567776543
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.035 Score=57.68 Aligned_cols=134 Identities=15% Similarity=0.141 Sum_probs=70.8
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCee-----e-cCC
Q 003886 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-----N-LTE 369 (789)
Q Consensus 296 ~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~-Lt~ 369 (789)
-+..+.++.++.+ ++|++. ...||.+|+. +..++ . ++.
T Consensus 185 ~f~~~~~~~~~~~----~~F~Sy---------------~G~v~~~dls-----------------g~~~~~~~~~~~~t~ 228 (342)
T PF06433_consen 185 LFEHPAYSRDGGR----LYFVSY---------------EGNVYSADLS-----------------GDSAKFGKPWSLLTD 228 (342)
T ss_dssp B-S--EEETTTTE----EEEEBT---------------TSEEEEEEET-----------------TSSEEEEEEEESS-H
T ss_pred cccccceECCCCe----EEEEec---------------CCEEEEEecc-----------------CCcccccCcccccCc
Confidence 4557788888877 899883 3478999883 22221 1 111
Q ss_pred -----C--CCccCcceecCCCCEEEEEecCCCCCCCCccc-cceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccc
Q 003886 370 -----S--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA-TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 441 (789)
Q Consensus 370 -----~--~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~-~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~ 441 (789)
+ .+.....++.+..+.|+.+-.+.. .|.|.. ...||++|+.+++......-..
T Consensus 229 ~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~--~gsHKdpgteVWv~D~~t~krv~Ri~l~~----------------- 289 (342)
T PF06433_consen 229 AEKADGWRPGGWQLIAYHAASGRLYVLMHQGG--EGSHKDPGTEVWVYDLKTHKRVARIPLEH----------------- 289 (342)
T ss_dssp HHHHTTEEE-SSS-EEEETTTTEEEEEEEE----TT-TTS-EEEEEEEETTTTEEEEEEEEEE-----------------
T ss_pred cccccCcCCcceeeeeeccccCeEEEEecCCC--CCCccCCceEEEEEECCCCeEEEEEeCCC-----------------
Confidence 1 123445677777777766544321 244533 3579999998866531111000
Q ss_pred cccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC
Q 003886 442 YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES 488 (789)
Q Consensus 442 ~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~ 488 (789)
.+.++..+.|.+-++|..+. +...|+.+|..+|+..+-...-+
T Consensus 290 ---~~~Si~Vsqd~~P~L~~~~~-~~~~l~v~D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 290 ---PIDSIAVSQDDKPLLYALSA-GDGTLDVYDAATGKLVRSIEQLG 332 (342)
T ss_dssp ---EESEEEEESSSS-EEEEEET-TTTEEEEEETTT--EEEEE---S
T ss_pred ---ccceEEEccCCCcEEEEEcC-CCCeEEEEeCcCCcEEeehhccC
Confidence 01244567777766665433 44578899999998877665544
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00095 Score=63.14 Aligned_cols=100 Identities=16% Similarity=0.176 Sum_probs=69.4
Q ss_pred EEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccE
Q 003886 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 673 (789)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv 673 (789)
++|++-|-++ +...=......|+++|+.|+.+|-.- | |. ..+...+...|+.+.+++..++ ...+++
T Consensus 4 ~~v~~SGDgG--w~~~d~~~a~~l~~~G~~VvGvdsl~---Y---fw---~~rtP~~~a~Dl~~~i~~y~~~--w~~~~v 70 (192)
T PF06057_consen 4 LAVFFSGDGG--WRDLDKQIAEALAKQGVPVVGVDSLR---Y---FW---SERTPEQTAADLARIIRHYRAR--WGRKRV 70 (192)
T ss_pred EEEEEeCCCC--chhhhHHHHHHHHHCCCeEEEechHH---H---Hh---hhCCHHHHHHHHHHHHHHHHHH--hCCceE
Confidence 5677777333 22222235679999999999999431 1 21 1122233467888888888877 457899
Q ss_pred EEEEcCccHHHHHHHHHhCCC----ceeEEEEeCCcc
Q 003886 674 TVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLC 706 (789)
Q Consensus 674 ~l~G~S~GG~~a~~~~~~~p~----~~~a~v~~~pv~ 706 (789)
.|+|+|+|+-+...+..+-|. +++.+++.+|-.
T Consensus 71 vLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~ 107 (192)
T PF06057_consen 71 VLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSPST 107 (192)
T ss_pred EEEeecCCchhHHHHHhhCCHHHHhheeEEEEeccCC
Confidence 999999999988888887764 677787777643
|
VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium []. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00017 Score=49.93 Aligned_cols=29 Identities=38% Similarity=0.592 Sum_probs=24.0
Q ss_pred eecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 365 VNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 365 ~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
++++...+....|.|||||++|+|++.+.
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCC
Confidence 56777778889999999999999999886
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PRK04940 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0021 Score=60.74 Aligned_cols=91 Identities=11% Similarity=0.122 Sum_probs=54.4
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcC
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKS 750 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 750 (789)
++++|+|.|+|||.|.+++.++. . .+|++||...+...+. ...+. ..+ +. .-..+..+.++
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~-~aVLiNPAv~P~~~L~----------~~ig~-~~~-y~-~~~~~h~~eL~--- 120 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--I-RQVIFNPNLFPEENME----------GKIDR-PEE-YA-DIATKCVTNFR--- 120 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--C-CEEEECCCCChHHHHH----------HHhCC-Ccc-hh-hhhHHHHHHhh---
Confidence 46999999999999999999864 4 4566788765422110 00010 000 11 00111112221
Q ss_pred ccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHC
Q 003886 751 PISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHI 785 (789)
Q Consensus 751 p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l 785 (789)
.+-.-..+++..+.|++.++.++.+.|...
T Consensus 121 -----~~~p~r~~vllq~gDEvLDyr~a~~~y~~~ 150 (180)
T PRK04940 121 -----EKNRDRCLVILSRNDEVLDSQRTAEELHPY 150 (180)
T ss_pred -----hcCcccEEEEEeCCCcccCHHHHHHHhccC
Confidence 112223699999999999999999877654
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.065 Score=57.16 Aligned_cols=261 Identities=13% Similarity=0.095 Sum_probs=137.9
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
-+....|.++|+.|-= ++...+.||..+.. +++.......|.| .++.---||+.|- .. +.....
T Consensus 248 ~Vl~v~F~engdviTg------DS~G~i~Iw~~~~~-~~~k~~~aH~ggv------~~L~~lr~GtllS-Gg--KDRki~ 311 (626)
T KOG2106|consen 248 FVLCVTFLENGDVITG------DSGGNILIWSKGTN-RISKQVHAHDGGV------FSLCMLRDGTLLS-GG--KDRKII 311 (626)
T ss_pred EEEEEEEcCCCCEEee------cCCceEEEEeCCCc-eEEeEeeecCCce------EEEEEecCccEee-cC--ccceEE
Confidence 3778889999987641 23346788843221 1111111222333 5677778887543 22 222234
Q ss_pred CccCCCCCCCCCC-cCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003886 235 TFSLGSTKGGSSD-KDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (789)
Q Consensus 235 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (789)
.|+..+++....+ ++.... .....+..++.+.+..++.|..=.++++-...+. ...+ ....++-.|+... +
T Consensus 312 ~Wd~~y~k~r~~elPe~~G~--iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~-gh~d-elwgla~hps~~q----~ 383 (626)
T KOG2106|consen 312 LWDDNYRKLRETELPEQFGP--IRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ-GHGD-ELWGLATHPSKNQ----L 383 (626)
T ss_pred eccccccccccccCchhcCC--eeEEecCCCcEEEeeccceEEEeeecCCceEEEE-eccc-ceeeEEcCCChhh----e
Confidence 5554444433221 111111 1112223344566666666666666665433331 1112 4456777888776 5
Q ss_pred EEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 314 ~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
+-.+. ..++.+++- ..-+..+++.. .+....|.|-| .||.-+..
T Consensus 384 ~T~gq---------------dk~v~lW~~-----------------~k~~wt~~~~d--~~~~~~fhpsg-~va~Gt~~- 427 (626)
T KOG2106|consen 384 LTCGQ---------------DKHVRLWND-----------------HKLEWTKIIED--PAECADFHPSG-VVAVGTAT- 427 (626)
T ss_pred eeccC---------------cceEEEccC-----------------CceeEEEEecC--ceeEeeccCcc-eEEEeecc-
Confidence 55542 113334431 22233334333 35667889999 66655433
Q ss_pred CCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 394 ~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
.+.+++|.++... +.+-.+. ..+..+.++|||..|. .++.++...||++
T Consensus 428 ----------G~w~V~d~e~~~l----------v~~~~d~----------~~ls~v~ysp~G~~lA-vgs~d~~iyiy~V 476 (626)
T KOG2106|consen 428 ----------GRWFVLDTETQDL----------VTIHTDN----------EQLSVVRYSPDGAFLA-VGSHDNHIYIYRV 476 (626)
T ss_pred ----------ceEEEEeccccee----------EEEEecC----------CceEEEEEcCCCCEEE-EecCCCeEEEEEE
Confidence 3688899776322 1111110 1245678999998664 4566777889999
Q ss_pred ECCCCcEEEecCCCC-CceeEEeeecCCEEEEEE
Q 003886 474 NVSSGELLRITPAES-NFSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 474 dl~tg~~~~lt~~~~-~~~~~~~s~dg~~l~~~~ 506 (789)
+.++.+..++-.-.+ .+....||+|++++....
T Consensus 477 s~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 477 SANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS 510 (626)
T ss_pred CCCCcEEEEeeeecCceeEEeeecCCCceEEecc
Confidence 987766666543333 344557888888765443
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0052 Score=61.61 Aligned_cols=113 Identities=15% Similarity=0.169 Sum_probs=69.9
Q ss_pred cceeeCCcccccCCccCceEEEEEc-cCCce-EeccC-CCC----CCccceEEEeeCCCCCccEEEEEeecCCceeeeee
Q 003886 256 QGDWEEDWGETYAGKRQPSLFVINI-NSGEV-QAVKG-IPK----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK 328 (789)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~-~~g~~-~~l~~-~~~----~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~ 328 (789)
...|++| |+++...-+..|.++|+ ..|.- ...+. +.+ ...+..+++||-.... ++..+
T Consensus 163 sL~Fs~D-GeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~---~a~gs----------- 227 (406)
T KOG2919|consen 163 SLQFSPD-GEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKT---LAVGS----------- 227 (406)
T ss_pred eEEecCC-CCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcc---eeeec-----------
Confidence 3458999 45554445677888887 33431 11110 111 2245678999965541 55444
Q ss_pred eeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEE
Q 003886 329 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 408 (789)
Q Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~ 408 (789)
|.+...||.-+ ....+..|-.+.+.++...|-+||++|+.-+.+. ..|..
T Consensus 228 --Y~q~~giy~~~------------------~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~----------dkIl~ 277 (406)
T KOG2919|consen 228 --YGQRVGIYNDD------------------GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKD----------DKILC 277 (406)
T ss_pred --ccceeeeEecC------------------CCCceeeecccCCCeeeEEeccCcCeecccccCC----------CeEEE
Confidence 23444677666 4556667777788899999999999875444332 46999
Q ss_pred eecCC
Q 003886 409 IDWPT 413 (789)
Q Consensus 409 ~d~~~ 413 (789)
||+..
T Consensus 278 WDiR~ 282 (406)
T KOG2919|consen 278 WDIRY 282 (406)
T ss_pred Eeehh
Confidence 99864
|
|
| >PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3 | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0054 Score=62.18 Aligned_cols=123 Identities=14% Similarity=0.207 Sum_probs=71.3
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHH----HHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL----AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~----~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
.++..+.-. ..+++|+||-.|.-+.. ....|..++ .......+.++-+|.+|... |. ..++..+-..
T Consensus 10 ~v~V~v~G~----~~~~kp~ilT~HDvGlN-h~scF~~ff~~~~m~~i~~~f~i~Hi~aPGqe~-ga---~~~p~~y~yP 80 (283)
T PF03096_consen 10 SVHVTVQGD----PKGNKPAILTYHDVGLN-HKSCFQGFFNFEDMQEILQNFCIYHIDAPGQEE-GA---ATLPEGYQYP 80 (283)
T ss_dssp EEEEEEESS------TTS-EEEEE--TT---HHHHCHHHHCSHHHHHHHTTSEEEEEE-TTTST-T--------TT----
T ss_pred EEEEEEEec----CCCCCceEEEecccccc-chHHHHHHhcchhHHHHhhceEEEEEeCCCCCC-Cc---cccccccccc
Confidence 456555532 23479999999985442 122243322 22334569999999987432 22 2334555556
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccch
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~ 708 (789)
.++++.+.+..+++. ..-+.+.-+|--.|+++-+++|..+|+++.++|+++|...-
T Consensus 81 smd~LAe~l~~Vl~~--f~lk~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~ 136 (283)
T PF03096_consen 81 SMDQLAEMLPEVLDH--FGLKSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTA 136 (283)
T ss_dssp -HHHHHCTHHHHHHH--HT---EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S-
T ss_pred CHHHHHHHHHHHHHh--CCccEEEEEeeccchhhhhhccccCccceeEEEEEecCCCC
Confidence 678888777777776 34467999999999999999999999999999999987643
|
Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A. |
| >PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids [] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00036 Score=68.79 Aligned_cols=89 Identities=25% Similarity=0.459 Sum_probs=53.1
Q ss_pred EEEEcCCCCCCCchhhHHHHHHHHHCCcE---EEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 595 IVVLHGGPHSVSLSSYSKSLAFLSSVGYS---LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 595 vv~~HGg~~~~~~~~~~~~~~~la~~Gy~---V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
||++||-... ....|......|.++||. |++++|-...+ ........ .....+.++.+.|+.+++. ...
T Consensus 4 VVlVHG~~~~-~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~--~~~~~~~~--~~~~~~~~l~~fI~~Vl~~--TGa- 75 (219)
T PF01674_consen 4 VVLVHGTGGN-AYSNWSTLAPYLKAAGYCDSEVYALTYGSGNG--SPSVQNAH--MSCESAKQLRAFIDAVLAY--TGA- 75 (219)
T ss_dssp EEEE--TTTT-TCGGCCHHHHHHHHTT--CCCEEEE--S-CCH--HTHHHHHH--B-HHHHHHHHHHHHHHHHH--HT--
T ss_pred EEEECCCCcc-hhhCHHHHHHHHHHcCCCcceeEeccCCCCCC--CCcccccc--cchhhHHHHHHHHHHHHHh--hCC-
Confidence 6789995542 356788888999999999 89999843211 11111100 1122346777888888765 346
Q ss_pred cEEEEEcCccHHHHHHHHHh
Q 003886 672 KVTVVGGSHGGFLTTHLIGQ 691 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~ 691 (789)
+|-|+|||+||.++-+++..
T Consensus 76 kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 76 KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp -EEEEEETCHHHHHHHHHHH
T ss_pred EEEEEEcCCcCHHHHHHHHH
Confidence 99999999999999988753
|
This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A .... |
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.018 Score=59.08 Aligned_cols=128 Identities=19% Similarity=0.193 Sum_probs=81.5
Q ss_pred CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCcc
Q 003886 295 LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSA 374 (789)
Q Consensus 295 ~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~ 374 (789)
..+.++.|++ ... ++-++|++ .|..+|+. .++...+++.. ...
T Consensus 261 ~~Vs~V~w~d-~~v----~yS~SwDH---------------TIk~WDle----------------tg~~~~~~~~~-ksl 303 (423)
T KOG0313|consen 261 EPVSSVVWSD-ATV----IYSVSWDH---------------TIKVWDLE----------------TGGLKSTLTTN-KSL 303 (423)
T ss_pred cceeeEEEcC-CCc----eEeecccc---------------eEEEEEee----------------cccceeeeecC-cce
Confidence 3678999998 333 55566544 47788882 33344455543 346
Q ss_pred CcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccC
Q 003886 375 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 454 (789)
Q Consensus 375 ~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~D 454 (789)
.....+|.-+.|+..+.+ .+|.+||..++....... .|-| +..-+..+.|+|-
T Consensus 304 ~~i~~~~~~~Ll~~gssd-----------r~irl~DPR~~~gs~v~~---------------s~~g-H~nwVssvkwsp~ 356 (423)
T KOG0313|consen 304 NCISYSPLSKLLASGSSD-----------RHIRLWDPRTGDGSVVSQ---------------SLIG-HKNWVSSVKWSPT 356 (423)
T ss_pred eEeecccccceeeecCCC-----------CceeecCCCCCCCceeEE---------------eeec-chhhhhheecCCC
Confidence 678889988877765543 368999987654321110 1111 1113457789999
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCcEEEecCC
Q 003886 455 GCTMLLSSIWGSSQVIISVNVSSGELLRITPA 486 (789)
Q Consensus 455 g~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~ 486 (789)
..+++++++.++...||-+.-..+.+..|...
T Consensus 357 ~~~~~~S~S~D~t~klWDvRS~k~plydI~~h 388 (423)
T KOG0313|consen 357 NEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH 388 (423)
T ss_pred CceEEEEEecCCeEEEEEeccCCCcceeeccC
Confidence 99999999999999999776544455555544
|
|
| >KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0046 Score=61.81 Aligned_cols=120 Identities=15% Similarity=0.178 Sum_probs=85.0
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH-----HHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-----SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-----~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
++..++-- ++.++|+||-.|.-+... ...|.. .++-+.++ |.|+-+|.+|.- .| ...++..+-..
T Consensus 34 v~V~V~Gd----~~~~kpaiiTyhDlglN~-~scFq~ff~~p~m~ei~~~-fcv~HV~~PGqe-~g---Ap~~p~~y~yP 103 (326)
T KOG2931|consen 34 VHVTVYGD----PKGNKPAIITYHDLGLNH-KSCFQGFFNFPDMAEILEH-FCVYHVDAPGQE-DG---APSFPEGYPYP 103 (326)
T ss_pred EEEEEecC----CCCCCceEEEecccccch-HhHhHHhhcCHhHHHHHhh-eEEEecCCCccc-cC---CccCCCCCCCC
Confidence 55555532 233688899999854431 222332 34455566 999999987731 12 33445665566
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
..+++.+.+-.+++. ..-+-|.-+|--.|+++.++.|..||+|+-++|++++...
T Consensus 104 smd~LAd~l~~VL~~--f~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~ 158 (326)
T KOG2931|consen 104 SMDDLADMLPEVLDH--FGLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPC 158 (326)
T ss_pred CHHHHHHHHHHHHHh--cCcceEEEecccccHHHHHHHHhcChhheeEEEEEecCCC
Confidence 788888888877776 4556789999999999999999999999999999998654
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.033 Score=58.26 Aligned_cols=206 Identities=15% Similarity=0.163 Sum_probs=122.0
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-cee-EEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-QLE-KEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~-~~~-~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
-+....++|+-..++..+... .+.+|..+ ... ..... +.++| ..++-.|.|++|+.++.+..
T Consensus 263 ki~~v~~~~~~~~v~~aSad~-----~i~vws~~~~s~~~~~~~---h~~~V------~~ls~h~tgeYllsAs~d~~-- 326 (506)
T KOG0289|consen 263 KITSVKFHKDLDTVITASADE-----IIRVWSVPLSSEPTSSRP---HEEPV------TGLSLHPTGEYLLSASNDGT-- 326 (506)
T ss_pred EEEEEEeccchhheeecCCcc-----eEEeeccccccCcccccc---ccccc------eeeeeccCCcEEEEecCCce--
Confidence 367788999988877655443 67788322 111 11111 11222 78888999998887766531
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCce-EeccCCCCCCccceEEEeeCCCCCcc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~-~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
....|+.+|.. ..+..-..+......+|.|||
T Consensus 327 ------------------------------------------w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg----- 359 (506)
T KOG0289|consen 327 ------------------------------------------WAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG----- 359 (506)
T ss_pred ------------------------------------------EEEEEccCCcEEEEEeeccccceeEEeeEcCCc-----
Confidence 11123333322 111000123456788999998
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEec
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
++|.... .+..|-++|+. ......+...+.+.+...+||-+|=+||...+
T Consensus 360 -Lifgtgt-------------~d~~vkiwdlk----------------s~~~~a~Fpght~~vk~i~FsENGY~Lat~ad 409 (506)
T KOG0289|consen 360 -LIFGTGT-------------PDGVVKIWDLK----------------SQTNVAKFPGHTGPVKAISFSENGYWLATAAD 409 (506)
T ss_pred -eEEeccC-------------CCceEEEEEcC----------------CccccccCCCCCCceeEEEeccCceEEEEEec
Confidence 4555422 22367778872 22345566667788999999999999998886
Q ss_pred CCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 392 ~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
+. .+.+||+......+. ...+ +.+ .+..+.|...|++|... +....+|
T Consensus 410 d~-----------~V~lwDLRKl~n~kt----------~~l~--~~~------~v~s~~fD~SGt~L~~~---g~~l~Vy 457 (506)
T KOG0289|consen 410 DG-----------SVKLWDLRKLKNFKT----------IQLD--EKK------EVNSLSFDQSGTYLGIA---GSDLQVY 457 (506)
T ss_pred CC-----------eEEEEEehhhcccce----------eecc--ccc------cceeEEEcCCCCeEEee---cceeEEE
Confidence 64 389999865332110 0000 000 23466788888877654 5567888
Q ss_pred EEECCCCcEEEecC
Q 003886 472 SVNVSSGELLRITP 485 (789)
Q Consensus 472 ~~dl~tg~~~~lt~ 485 (789)
.++-.+.+.+.+..
T Consensus 458 ~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 458 ICKKKTKSWTEIKE 471 (506)
T ss_pred EEecccccceeeeh
Confidence 88877777666543
|
|
| >KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0029 Score=60.23 Aligned_cols=108 Identities=22% Similarity=0.308 Sum_probs=77.8
Q ss_pred CcEEEEEcCCCCCCCc-hhhHHHHHHHHHCCcEEEEEcCCCCC-CCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 003886 592 DPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGSL-GFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~-~~~~~~~~~la~~Gy~V~~~d~rGs~-G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (789)
.-.|||+-|-+.+.-. ..-.....+|.+.+|..+.+..|.+. |||.... ..+.+|+..+++++...+.
T Consensus 36 ~~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~sl--------k~D~edl~~l~~Hi~~~~f-- 105 (299)
T KOG4840|consen 36 SVKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFSL--------KDDVEDLKCLLEHIQLCGF-- 105 (299)
T ss_pred EEEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccccccccccc--------cccHHHHHHHHHHhhccCc--
Confidence 3567777553322211 22334567889999999999998653 5665432 4568899999998766542
Q ss_pred CccEEEEEcCccHHHHHHHHHh--CCCceeEEEEeCCccchh
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCNLA 709 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~--~p~~~~a~v~~~pv~~~~ 709 (789)
.+.|.++|||-|..-.++++++ .+..++++|+.+||.|-.
T Consensus 106 St~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 106 STDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred ccceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 3489999999999999888854 245788999999999976
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00057 Score=69.27 Aligned_cols=138 Identities=14% Similarity=0.196 Sum_probs=87.5
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
.+..|+++|.-.+.+..- .--.......+|+| +. ..|++- +.+..||.+|..
T Consensus 208 sDrsIvLyD~R~~~Pl~K--Vi~~mRTN~IswnP--ea----fnF~~a-------------~ED~nlY~~DmR------- 259 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKK--VILTMRTNTICWNP--EA----FNFVAA-------------NEDHNLYTYDMR------- 259 (433)
T ss_pred cCCceEEEecccCCccce--eeeeccccceecCc--cc----cceeec-------------cccccceehhhh-------
Confidence 357799999877654321 12233456889999 44 667662 234579999973
Q ss_pred hhhhhcCCCCCCCeeec-CCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEee
Q 003886 351 ELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~L-t~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~ 429 (789)
.-..+..+ ..+...+....|||-|+-++..+-+. .|.++....+..+.+-.... .
T Consensus 260 ---------~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk-----------sIRIf~~~~~~SRdiYhtkR-M--- 315 (433)
T KOG0268|consen 260 ---------NLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK-----------SIRIFPVNHGHSRDIYHTKR-M--- 315 (433)
T ss_pred ---------hhcccchhhcccceeEEEeccCCCcchhccccccc-----------eEEEeecCCCcchhhhhHhh-h---
Confidence 11222222 23344578899999999988766554 47777766655543321110 0
Q ss_pred eeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003886 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
..+..+.||.|+++| +++++++...||.-+.
T Consensus 316 --------------q~V~~Vk~S~Dskyi-~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 316 --------------QHVFCVKYSMDSKYI-ISGSDDGNVRLWKAKA 346 (433)
T ss_pred --------------heeeEEEEeccccEE-EecCCCcceeeeecch
Confidence 124466899999855 7888899999998764
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.01 Score=68.59 Aligned_cols=97 Identities=13% Similarity=0.103 Sum_probs=59.7
Q ss_pred CeEEEEecCCCCCCeEEEEecCC-ceeEE-EecCCCccccccCCCcccceeecCCCCEEEE-EeecCCCCCCCccCCCCC
Q 003886 166 SKLLVVRNPENESPIQFELWSQS-QLEKE-FHVPQTVHGSVYADGWFEGISWNSDETLIAY-VAEEPSPSKPTFSLGSTK 242 (789)
Q Consensus 166 ~~la~~~~~~~~~~~~~~i~~~~-~~~~~-~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~-~~~~~~~~~~~~~~~~~~ 242 (789)
.+|||+.+.. + .|..++.+| ..+.+ ++....+ ..+.|||||++||| ++.+...
T Consensus 319 tkiAfv~~~~-~--~L~~~D~dG~n~~~ve~~~~~~i----------~sP~~SPDG~~vAY~ts~e~~~----------- 374 (912)
T TIGR02171 319 AKLAFRNDVT-G--NLAYIDYTKGASRAVEIEDTISV----------YHPDISPDGKKVAFCTGIEGLP----------- 374 (912)
T ss_pred eeEEEEEcCC-C--eEEEEecCCCCceEEEecCCCce----------ecCcCCCCCCEEEEEEeecCCC-----------
Confidence 4788987632 1 577788444 44444 4433333 68999999999999 5443211
Q ss_pred CCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc--eEeccCCCCCCccceEEEeeCCCCCccEEEEEeec
Q 003886 243 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (789)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~--~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~ 319 (789)
+++.||+-|+.+.. ...|. -....+........|... |+|++.-
T Consensus 375 ----------------------------g~s~vYv~~L~t~~~~~vkl~--ve~aaiprwrv~e~gdt~---ivyv~~a 420 (912)
T TIGR02171 375 ----------------------------GKSSVYVRNLNASGSGLVKLP--VENAAIPRWRVLENGDTV---IVYVSDA 420 (912)
T ss_pred ----------------------------CCceEEEEehhccCCCceEee--cccccccceEecCCCCeE---EEEEcCC
Confidence 35779998887543 33341 123334444556777764 8888743
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.019 Score=60.24 Aligned_cols=151 Identities=16% Similarity=0.122 Sum_probs=96.1
Q ss_pred ceEEEEEccCC--ceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 273 PSLFVININSG--EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 273 ~~l~v~d~~~g--~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
..|.+||+.++ +..... ...+..+..++|.|=+.. |+-++. -+..|.++|++.
T Consensus 250 ~~L~iwD~R~~~~~~~~~~-~ah~~~vn~~~fnp~~~~----ilAT~S--------------~D~tV~LwDlRn------ 304 (422)
T KOG0264|consen 250 GKLMIWDTRSNTSKPSHSV-KAHSAEVNCVAFNPFNEF----ILATGS--------------ADKTVALWDLRN------ 304 (422)
T ss_pred CeEEEEEcCCCCCCCcccc-cccCCceeEEEeCCCCCc----eEEecc--------------CCCcEEEeechh------
Confidence 57899998853 332221 122446778999998887 766652 223688888841
Q ss_pred hhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceee--EEe
Q 003886 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD--VIP 428 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~--v~~ 428 (789)
-...+..+..+...+....|||+-..++-.+..+ .+|.+||+..-+..+......+ .-.
T Consensus 305 ---------L~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D----------~rl~vWDls~ig~eq~~eda~dgppEl 365 (422)
T KOG0264|consen 305 ---------LNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD----------RRLNVWDLSRIGEEQSPEDAEDGPPEL 365 (422)
T ss_pred ---------cccCceeccCCCcceEEEEeCCCCCceeEecccC----------CcEEEEeccccccccChhhhccCCcce
Confidence 2235667777788899999999998887666433 4689999865333322111100 000
Q ss_pred eeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003886 429 VVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (789)
Q Consensus 429 ~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~d 474 (789)
++. .|-....+..+.|.|..-.++.+...++..+||.+.
T Consensus 366 lF~-------HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 366 LFI-------HGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred eEE-------ecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 010 011223567889999999999998888888888764
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.022 Score=54.84 Aligned_cols=239 Identities=15% Similarity=0.103 Sum_probs=137.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
+.+.+..|.-||++.+..... ....+|+ .|...+.... ||. ......-|.|..+++-...++.
T Consensus 18 gaV~avryN~dGnY~ltcGsd-----rtvrLWNp~rg~liktYsg----hG~-----EVlD~~~s~Dnskf~s~GgDk~- 82 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSD-----RTVRLWNPLRGALIKTYSG----HGH-----EVLDAALSSDNSKFASCGGDKA- 82 (307)
T ss_pred cceEEEEEccCCCEEEEcCCC-----ceEEeecccccceeeeecC----CCc-----eeeeccccccccccccCCCCce-
Confidence 457889999999999876333 4788884 4444443322 111 1256777888888776555443
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCC-CCccceEEEeeCCCCCc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~-~~~~~~~~wSPDg~~~~ 310 (789)
..+|+...++...++..+..-+....|.++-.-.+++.-+..+.+||-.+..++++.-+.. ...+.++..+ +..
T Consensus 83 -v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~he-- 157 (307)
T KOG0316|consen 83 -VQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHE-- 157 (307)
T ss_pred -EEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccE--
Confidence 2356666666666676666666666777776555666677889999977654443320111 1123333332 222
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC--CCccCcceecCCCCEEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVF 388 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~--~~~~~~p~~SpDG~~la~ 388 (789)
|+-.+ .+..+..+|+. .| +++.+ ...+....||+||+-++.
T Consensus 158 --IvaGS---------------~DGtvRtydiR-----------------~G---~l~sDy~g~pit~vs~s~d~nc~La 200 (307)
T KOG0316|consen 158 --IVAGS---------------VDGTVRTYDIR-----------------KG---TLSSDYFGHPITSVSFSKDGNCSLA 200 (307)
T ss_pred --EEeec---------------cCCcEEEEEee-----------------cc---eeehhhcCCcceeEEecCCCCEEEE
Confidence 44333 22356677772 22 22222 335788999999998877
Q ss_pred EecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeE
Q 003886 389 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 468 (789)
Q Consensus 389 ~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 468 (789)
.+... .|+++|-.+|+......+.... ++ -...+++ ++...+|+.+.+|
T Consensus 201 ~~l~s-----------tlrLlDk~tGklL~sYkGhkn~----------ey-------kldc~l~-qsdthV~sgSEDG-- 249 (307)
T KOG0316|consen 201 SSLDS-----------TLRLLDKETGKLLKSYKGHKNM----------EY-------KLDCCLN-QSDTHVFSGSEDG-- 249 (307)
T ss_pred eeccc-----------eeeecccchhHHHHHhcccccc----------ee-------eeeeeec-ccceeEEeccCCc--
Confidence 66554 5899998888775443333210 00 0122333 3345667776666
Q ss_pred EEEEEECCCCcE
Q 003886 469 VIISVNVSSGEL 480 (789)
Q Consensus 469 ~l~~~dl~tg~~ 480 (789)
.+|.+|+..+.+
T Consensus 250 ~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 250 KVYFWDLVDETQ 261 (307)
T ss_pred eEEEEEecccee
Confidence 456667655443
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.079 Score=59.19 Aligned_cols=214 Identities=15% Similarity=0.141 Sum_probs=120.0
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
..++.|||++.|||+-... +..+-.|.+.|+.+|+.....
T Consensus 132 g~~~~s~D~~~la~s~D~~---------------------------------------G~e~y~lr~kdL~tg~~~~d~- 171 (682)
T COG1770 132 GAASISPDHNLLAYSVDVL---------------------------------------GDEQYTLRFKDLATGEELPDE- 171 (682)
T ss_pred eeeeeCCCCceEEEEEecc---------------------------------------cccEEEEEEEecccccccchh-
Confidence 6788999999999975543 113467889999998764331
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC
Q 003886 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (789)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (789)
-....+.++|++|++. ++|+..... .|+..||+..+.. ....-+.+.+.
T Consensus 172 --i~~~~~~~~Wa~d~~~----lfYt~~d~~----------~rp~kv~~h~~gt---------------~~~~d~lvyeE 220 (682)
T COG1770 172 --ITNTSGSFAWAADGKT----LFYTRLDEN----------HRPDKVWRHRLGT---------------PGSSDELVYEE 220 (682)
T ss_pred --hcccccceEEecCCCe----EEEEEEcCC----------CCcceEEEEecCC---------------CCCcceEEEEc
Confidence 1123678999999999 999874332 2667899988721 11333334332
Q ss_pred C--CccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCC
Q 003886 371 I--SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 448 (789)
Q Consensus 371 ~--~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~ 448 (789)
. ....+..=|...++|+...+.. .++.+++++.+..+... ..+.+ .+.+- .
T Consensus 221 ~d~~f~~~v~~s~s~~yi~i~~~~~--------~tsE~~ll~a~~p~~~p-----~vv~p---r~~g~-----------e 273 (682)
T COG1770 221 KDDRFFLSVGRSRSEAYIVISLGSH--------ITSEVRLLDADDPEAEP-----KVVLP---RENGV-----------E 273 (682)
T ss_pred CCCcEEEEeeeccCCceEEEEcCCC--------cceeEEEEecCCCCCce-----EEEEE---cCCCc-----------E
Confidence 2 2223334466677776665443 35678888876543321 11111 10000 0
Q ss_pred CccccCCCEEEEEEEeCC-eEEEEEEEC--CCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 449 NPWLSDGCTMLLSSIWGS-SQVIISVNV--SSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 449 ~~ws~Dg~~l~~~~~~~~-~~~l~~~dl--~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
..--.-|.++|+.++.++ ...|+...+ .....+.+.+.........++.-.++|+..+.....| .+++.+..++
T Consensus 274 Y~~eh~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp-~v~v~~~~~~ 350 (682)
T COG1770 274 YSVEHGGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLP-RVVVRDRKTG 350 (682)
T ss_pred EeeeecCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCc-eEEEEecCCC
Confidence 011123667777777766 445666544 1122233333333233345566677777777666654 4555555433
|
|
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.018 Score=67.14 Aligned_cols=224 Identities=16% Similarity=0.227 Sum_probs=123.3
Q ss_pred ccEEEEeCCCCCeEEEEecCCC-----CCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecC
Q 003886 155 GASAVVPSPSGSKLLVVRNPEN-----ESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~ 229 (789)
.+..+..+|+|+.++|+...-+ ....+|.. ++...+........ ..+.|||||+.+++.....
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~----------~~~~~spdg~~~~~~~~~~ 81 (620)
T COG1506 14 RVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVS--DGKTVRLLTFGGGV----------SELRWSPDGSVLAFVSTDG 81 (620)
T ss_pred cccCcccCCCCceeEEeeccccccccccccceEEE--ecccccccccCCcc----------cccccCCCCCEEEEEeccC
Confidence 4668899999999999987521 22233332 22212122222222 6899999999999986321
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCC
Q 003886 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 309 (789)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~ 309 (789)
. ...++++++.. | .+ ......+....|+|+|+.
T Consensus 82 ~----------------------------------------~~~~l~l~~~~-g---~~--~~~~~~v~~~~~~~~g~~- 114 (620)
T COG1506 82 G----------------------------------------RVAQLYLVDVG-G---LI--TKTAFGVSDARWSPDGDR- 114 (620)
T ss_pred C----------------------------------------CcceEEEEecC-C---ce--eeeecccccceeCCCCCe-
Confidence 0 23678888887 4 22 233456678899999999
Q ss_pred ccEEEEEeecCCceeeee----------eeec-c-CCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcc
Q 003886 310 HQYLVFVGWSSETRKLGI----------KYCY-N-RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFP 377 (789)
Q Consensus 310 ~~~l~f~~~~~~~~~~g~----------~~~~-~-~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p 377 (789)
+++........+.+. .+.. . ....+|++|. ++ ....+.........+
T Consensus 115 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~-----------------~~-~~~~~~~~~~~~~~~ 173 (620)
T COG1506 115 ---IAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDI-----------------ES-KLIKLGLGNLDVVSF 173 (620)
T ss_pred ---EEEEecccccccCCceeeeecccceeecCCCCcccceEEEcc-----------------Cc-ccccccCCCCceeee
Confidence 888432222122221 0001 1 3456777776 33 445555555667777
Q ss_pred eecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCE
Q 003886 378 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 457 (789)
Q Consensus 378 ~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~ 457 (789)
++.+|++.++.......... .....+.+...++....++.+.. ++..+.|.+||+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~gk~ 229 (620)
T COG1506 174 ATDGDGRLVASIRLDDDADP----WVTNLYVLIEGNGELESLTPGEG--------------------SISKLAFDADGKS 229 (620)
T ss_pred eeCCCCceeEEeeeccccCC----ceEeeEEEecCCCceEEEcCCCc--------------------eeeeeeeCCCCCe
Confidence 88888887777665542111 11233333333333322222111 2345678889997
Q ss_pred EEEEEEeCC-----eEEEEEEECCCCcEEE
Q 003886 458 MLLSSIWGS-----SQVIISVNVSSGELLR 482 (789)
Q Consensus 458 l~~~~~~~~-----~~~l~~~dl~tg~~~~ 482 (789)
+++...... ...++.++...++...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 259 (620)
T COG1506 230 IALLGTESDRGLAEGDFILLLDGELGEVDG 259 (620)
T ss_pred eEEeccCCccCccccceEEEEeccccccce
Confidence 777765433 1234444534454444
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.031 Score=59.49 Aligned_cols=82 Identities=20% Similarity=0.238 Sum_probs=54.6
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
...+|+|.++.....+. .......-+.|||||.. |+..+. +..||++.++.
T Consensus 428 G~w~V~d~e~~~lv~~~--~d~~~ls~v~ysp~G~~----lAvgs~---------------d~~iyiy~Vs~-------- 478 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIH--TDNEQLSVVRYSPDGAF----LAVGSH---------------DNHIYIYRVSA-------- 478 (626)
T ss_pred ceEEEEecccceeEEEE--ecCCceEEEEEcCCCCE----EEEecC---------------CCeEEEEEECC--------
Confidence 67889999987766663 23566778999999998 887762 22455554421
Q ss_pred hhhcCCCCCCCeeecCCCC-CccCcceecCCCCEEEEEe
Q 003886 353 ELKESSSEDLPVVNLTESI-SSAFFPRFSPDGKFLVFLS 390 (789)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~~-~~~~~p~~SpDG~~la~~s 390 (789)
++....++-... ..+....||+|+++|.-.+
T Consensus 479 -------~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 479 -------NGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS 510 (626)
T ss_pred -------CCcEEEEeeeecCceeEEeeecCCCceEEecc
Confidence 333444432222 4678899999999876544
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.016 Score=64.83 Aligned_cols=40 Identities=8% Similarity=-0.125 Sum_probs=25.8
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEe
Q 003886 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 317 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~ 317 (789)
...+-++|.++.++..- +.-+.......++|||++ +++++
T Consensus 214 ~~~vSvID~etmeV~~q--V~Vdgnpd~v~~spdGk~----afvTs 253 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQ--VMVDGNLDNVDTDYDGKY----AFSTC 253 (635)
T ss_pred eEEEEEEECccceEEEE--EEeCCCcccceECCCCCE----EEEec
Confidence 36677889888765432 122224567799999997 55554
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0035 Score=66.81 Aligned_cols=96 Identities=11% Similarity=0.205 Sum_probs=66.1
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
.+-.|||||.-|+.+.++ ..|..|... |-.+...
T Consensus 108 ~~gRW~~dGtgLlt~GED--------------------------------------------G~iKiWSrs-GMLRStl- 141 (737)
T KOG1524|consen 108 SSGRWSPDGAGLLTAGED--------------------------------------------GVIKIWSRS-GMLRSTV- 141 (737)
T ss_pred hhcccCCCCceeeeecCC--------------------------------------------ceEEEEecc-chHHHHH-
Confidence 688999999999887554 456666643 3332221
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC
Q 003886 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (789)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (789)
......+..++|.|+++. ++|..- .++++-.+. ...++.+-..+
T Consensus 142 ~Q~~~~v~c~~W~p~S~~----vl~c~g----------------~h~~IKpL~----------------~n~k~i~WkAH 185 (737)
T KOG1524|consen 142 VQNEESIRCARWAPNSNS----IVFCQG----------------GHISIKPLA----------------ANSKIIRWRAH 185 (737)
T ss_pred hhcCceeEEEEECCCCCc----eEEecC----------------CeEEEeecc----------------cccceeEEecc
Confidence 233446788999999999 999861 267776662 23345555667
Q ss_pred CCccCcceecCCCCEEEE
Q 003886 371 ISSAFFPRFSPDGKFLVF 388 (789)
Q Consensus 371 ~~~~~~p~~SpDG~~la~ 388 (789)
++-+....|||....|+.
T Consensus 186 DGiiL~~~W~~~s~lI~s 203 (737)
T KOG1524|consen 186 DGLVLSLSWSTQSNIIAS 203 (737)
T ss_pred CcEEEEeecCccccceee
Confidence 788889999999887654
|
|
| >KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00023 Score=75.41 Aligned_cols=130 Identities=24% Similarity=0.269 Sum_probs=82.7
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH-HHHHHHHC-CcEEEEEcCC-CCCCCCch-hhccCCC
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLSSV-GYSLLIVNYR-GSLGFGEE-ALQSLPG 645 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-~~~~la~~-Gy~V~~~d~r-Gs~G~G~~-~~~~~~~ 645 (789)
+.|.+.+. ++.|. .++ .+.-++|+++||+......+... ....|+.. .-+|+.+||| |.-||=-- .....++
T Consensus 117 SEDCLYlN--VW~P~-~~p-~n~tVlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG~FGFL~l~~~~eaPG 192 (601)
T KOG4389|consen 117 SEDCLYLN--VWAPA-ADP-YNLTVLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVGAFGFLYLPGHPEAPG 192 (601)
T ss_pred ChhceEEE--EeccC-CCC-CCceEEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeeccceEEecCCCCCCCC
Confidence 34555555 44452 112 23339999999876544433221 34566654 4788999999 44333111 2233455
Q ss_pred CCCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhCC---CceeEEEEeCCccc
Q 003886 646 KVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCN 707 (789)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~p---~~~~a~v~~~pv~~ 707 (789)
++| +-|+.-|++|+.++. .-|++||.|+|.|.|+..+..-+.. | ..|+.+|+.+|..+
T Consensus 193 NmG---l~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLls-P~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 193 NMG---LLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLS-PGSRGLFHRAILQSGSLN 256 (601)
T ss_pred ccc---hHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecC-CCchhhHHHHHhhcCCCC
Confidence 665 679999999998862 2589999999999999866543332 3 37888898888654
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.01 Score=59.33 Aligned_cols=186 Identities=11% Similarity=0.123 Sum_probs=104.1
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
....||+-|..||.... +..|.+||..|-.+-++
T Consensus 27 ~~~~Fs~~G~~lAvGc~--------------------------------------------nG~vvI~D~~T~~iar~-- 60 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCA--------------------------------------------NGRVVIYDFDTFRIARM-- 60 (405)
T ss_pred ceEEeccCcceeeeecc--------------------------------------------CCcEEEEEccccchhhh--
Confidence 68899999999998543 35688899888665554
Q ss_pred CCCC-CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCC
Q 003886 291 IPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 369 (789)
Q Consensus 291 ~~~~-~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~ 369 (789)
...+ ..+.+++||+||+. |+-.+ ++..+-.+|+. .+....++.-
T Consensus 61 lsaH~~pi~sl~WS~dgr~----LltsS---------------~D~si~lwDl~----------------~gs~l~rirf 105 (405)
T KOG1273|consen 61 LSAHVRPITSLCWSRDGRK----LLTSS---------------RDWSIKLWDLL----------------KGSPLKRIRF 105 (405)
T ss_pred hhccccceeEEEecCCCCE----eeeec---------------CCceeEEEecc----------------CCCceeEEEc
Confidence 3333 36789999999998 77665 34467777872 3333343321
Q ss_pred CCCccCcceecCCCCEEEEEe-cCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCC
Q 003886 370 SISSAFFPRFSPDGKFLVFLS-AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 448 (789)
Q Consensus 370 ~~~~~~~p~~SpDG~~la~~s-~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~ 448 (789)
...+....|.|-.+..+... .+. +-+++++.....+.+....+ .+.. .+...
T Consensus 106 -~spv~~~q~hp~k~n~~va~~~~~-----------sp~vi~~s~~~h~~Lp~d~d-----------~dln----~sas~ 158 (405)
T KOG1273|consen 106 -DSPVWGAQWHPRKRNKCVATIMEE-----------SPVVIDFSDPKHSVLPKDDD-----------GDLN----SSASH 158 (405)
T ss_pred -cCccceeeeccccCCeEEEEEecC-----------CcEEEEecCCceeeccCCCc-----------cccc----ccccc
Confidence 23456667777544333333 222 13444544322222222111 1110 11123
Q ss_pred CccccCCCEEEEEEEeCCeEEEEEEECCCCcEE---EecCCCCCceeEEeeecCCEEEEEEeC
Q 003886 449 NPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL---RITPAESNFSWSLLTLDGDNIIAVSSS 508 (789)
Q Consensus 449 ~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~---~lt~~~~~~~~~~~s~dg~~l~~~~ss 508 (789)
..|.+-|++|| +++..| .|..+|..|-++. +++... .+-...++..|+.+++..++
T Consensus 159 ~~fdr~g~yIi-tGtsKG--kllv~~a~t~e~vas~rits~~-~IK~I~~s~~g~~liiNtsD 217 (405)
T KOG1273|consen 159 GVFDRRGKYII-TGTSKG--KLLVYDAETLECVASFRITSVQ-AIKQIIVSRKGRFLIINTSD 217 (405)
T ss_pred ccccCCCCEEE-EecCcc--eEEEEecchheeeeeeeechhe-eeeEEEEeccCcEEEEecCC
Confidence 35788899775 443334 4555666565443 333322 23445678888887776654
|
|
| >PLN02733 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00055 Score=75.01 Aligned_cols=90 Identities=19% Similarity=0.218 Sum_probs=65.8
Q ss_pred chhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHH
Q 003886 607 LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT 686 (789)
Q Consensus 607 ~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~ 686 (789)
...|....+.|.+.||.+ ..|++| +|-+++... .....++++.+.++.+.++ ....+|.|+||||||.++.
T Consensus 107 ~~~~~~li~~L~~~GY~~-~~dL~g---~gYDwR~~~---~~~~~~~~Lk~lIe~~~~~--~g~~kV~LVGHSMGGlva~ 177 (440)
T PLN02733 107 VYYFHDMIEQLIKWGYKE-GKTLFG---FGYDFRQSN---RLPETMDGLKKKLETVYKA--SGGKKVNIISHSMGGLLVK 177 (440)
T ss_pred HHHHHHHHHHHHHcCCcc-CCCccc---CCCCccccc---cHHHHHHHHHHHHHHHHHH--cCCCCEEEEEECHhHHHHH
Confidence 456777889999999876 789887 666665421 1122356777777777665 3457899999999999999
Q ss_pred HHHHhCCCc----eeEEEEeCCc
Q 003886 687 HLIGQAPDK----FVAAAARNPL 705 (789)
Q Consensus 687 ~~~~~~p~~----~~a~v~~~pv 705 (789)
.++..+|+. ++..|+.++.
T Consensus 178 ~fl~~~p~~~~k~I~~~I~la~P 200 (440)
T PLN02733 178 CFMSLHSDVFEKYVNSWIAIAAP 200 (440)
T ss_pred HHHHHCCHhHHhHhccEEEECCC
Confidence 988887763 5677776654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.073 Score=53.26 Aligned_cols=110 Identities=23% Similarity=0.312 Sum_probs=71.8
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
.++..+|||.-..++-...-+ +...+|++.+.|....- .-....|.+ ..+.||.||.+++..+-
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD-~tVR~wevq~~g~~~~k--a~~~~~~Pv------L~v~WsddgskVf~g~~------- 92 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWD-GTVRIWEVQNSGQLVPK--AQQSHDGPV------LDVCWSDDGSKVFSGGC------- 92 (347)
T ss_pred chheeEeccccCceEEecccC-CceEEEEEecCCcccch--hhhccCCCe------EEEEEccCCceEEeecc-------
Confidence 488899999555554443333 55566776654443321 111222333 78999999987665433
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~ 314 (789)
+.++.+||+.++++.++ -..+..+....|-+-... ++|+
T Consensus 93 -------------------------------------Dk~~k~wDL~S~Q~~~v--~~Hd~pvkt~~wv~~~~~--~cl~ 131 (347)
T KOG0647|consen 93 -------------------------------------DKQAKLWDLASGQVSQV--AAHDAPVKTCHWVPGMNY--QCLV 131 (347)
T ss_pred -------------------------------------CCceEEEEccCCCeeee--eecccceeEEEEecCCCc--ceeE
Confidence 35678999999999888 556667888899887663 4477
Q ss_pred EEeecCC
Q 003886 315 FVGWSSE 321 (789)
Q Consensus 315 f~~~~~~ 321 (789)
-.+|+..
T Consensus 132 TGSWDKT 138 (347)
T KOG0647|consen 132 TGSWDKT 138 (347)
T ss_pred ecccccc
Confidence 7777655
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0034 Score=69.60 Aligned_cols=194 Identities=15% Similarity=0.093 Sum_probs=116.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-------CCceeEEEecCCCcccccc-CCCcccceeecCCCCEEEEE
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-------QSQLEKEFHVPQTVHGSVY-ADGWFEGISWNSDETLIAYV 225 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-------~~~~~~~~~~~~~~~g~v~-~d~~~~~~~wSpDg~~la~~ 225 (789)
+.+...+.+|||+..+..+.+. ...+|+ .|...+++.+. |..+. .++...+++.||||+.||..
T Consensus 455 gaIWsi~~~pD~~g~vT~saDk-----tVkfWdf~l~~~~~gt~~k~lsl~---~~rtLel~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 455 GAIWSISLSPDNKGFVTGSADK-----TVKFWDFKLVVSVPGTQKKVLSLK---HTRTLELEDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred cceeeeeecCCCCceEEecCCc-----EEEEEeEEEEeccCcccceeeeec---cceEEeccccEEEEEEcCCCcEEEEE
Confidence 5688899999999998876543 333441 23333322211 10110 12223799999999999987
Q ss_pred eecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeC
Q 003886 226 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 305 (789)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPD 305 (789)
--+.+...-+.+ .-+---..-.++-.+.....++|.....++..+..+.+|-++=|....-. ...+.++-.+.|-|+
T Consensus 527 LLdnTVkVyflD--tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~-fAHdDSvm~V~F~P~ 603 (888)
T KOG0306|consen 527 LLDNTVKVYFLD--TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF-FAHDDSVMSVQFLPK 603 (888)
T ss_pred eccCeEEEEEec--ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh-hcccCceeEEEEccc
Confidence 655543321111 11111111122222333445667666667777888999988877654331 455667889999995
Q ss_pred CCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCE
Q 003886 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF 385 (789)
Q Consensus 306 g~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~ 385 (789)
. . ++|++- +...+-.+|-. .=...+.|..+...+...+.+|+|.+
T Consensus 604 ~-~----~FFt~g--------------KD~kvKqWDg~----------------kFe~iq~L~~H~~ev~cLav~~~G~~ 648 (888)
T KOG0306|consen 604 T-H----LFFTCG--------------KDGKVKQWDGE----------------KFEEIQKLDGHHSEVWCLAVSPNGSF 648 (888)
T ss_pred c-e----eEEEec--------------CcceEEeechh----------------hhhhheeeccchheeeeeEEcCCCCe
Confidence 4 4 677762 23357777751 22356677777777888999999998
Q ss_pred EEEEecCC
Q 003886 386 LVFLSAKS 393 (789)
Q Consensus 386 la~~s~~~ 393 (789)
++..+.+.
T Consensus 649 vvs~shD~ 656 (888)
T KOG0306|consen 649 VVSSSHDK 656 (888)
T ss_pred EEeccCCc
Confidence 87766543
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.082 Score=50.40 Aligned_cols=129 Identities=15% Similarity=0.202 Sum_probs=67.5
Q ss_pred CCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecC
Q 003886 333 RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 412 (789)
Q Consensus 333 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~ 412 (789)
.++.||..|.. .+.....+..+.+.+.. -+|-+|-.++..+.+ ..|..||+.
T Consensus 161 gdc~iy~tdc~----------------~g~~~~a~sghtghila-lyswn~~m~~sgsqd-----------ktirfwdlr 212 (350)
T KOG0641|consen 161 GDCKIYITDCG----------------RGQGFHALSGHTGHILA-LYSWNGAMFASGSQD-----------KTIRFWDLR 212 (350)
T ss_pred CcceEEEeecC----------------CCCcceeecCCcccEEE-EEEecCcEEEccCCC-----------ceEEEEeee
Confidence 46789999982 34445677766654432 233345544433322 357778874
Q ss_pred CCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE-ecCCCCCce
Q 003886 413 TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR-ITPAESNFS 491 (789)
Q Consensus 413 ~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~ 491 (789)
-..- +.++... ..-.|+-.+.+..++..|.|+ |+.++..+...-|| |+.+|++.+ ..+...++.
T Consensus 213 v~~~----------v~~l~~~--~~~~glessavaav~vdpsgr-ll~sg~~dssc~ly--dirg~r~iq~f~phsadir 277 (350)
T KOG0641|consen 213 VNSC----------VNTLDND--FHDGGLESSAVAAVAVDPSGR-LLASGHADSSCMLY--DIRGGRMIQRFHPHSADIR 277 (350)
T ss_pred ccce----------eeeccCc--ccCCCcccceeEEEEECCCcc-eeeeccCCCceEEE--EeeCCceeeeeCCCcccee
Confidence 3221 1111110 011122223445667788887 55665555544555 555776544 444444555
Q ss_pred eEEeeecCCEEEE
Q 003886 492 WSLLTLDGDNIIA 504 (789)
Q Consensus 492 ~~~~s~dg~~l~~ 504 (789)
-.-|+|...+++.
T Consensus 278 ~vrfsp~a~yllt 290 (350)
T KOG0641|consen 278 CVRFSPGAHYLLT 290 (350)
T ss_pred EEEeCCCceEEEE
Confidence 5677876655543
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00058 Score=47.19 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=23.6
Q ss_pred ceeecCCcceecccEEEEeCCCCCeEEEEecCCC-CCCeEE
Q 003886 143 TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-ESPIQF 182 (789)
Q Consensus 143 ~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~-~~~~~~ 182 (789)
++|..+ +....|+|||||++|+|+++..+ +..+||
T Consensus 3 ~~t~~~-----~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSP-----GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SS-----SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcccCC-----ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 455554 45889999999999999998762 333443
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.049 Score=52.84 Aligned_cols=230 Identities=15% Similarity=0.142 Sum_probs=121.6
Q ss_pred CCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecC--CCCEEEEEeecCCCCCCCccCCCC
Q 003886 164 SGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNS--DETLIAYVAEEPSPSKPTFSLGST 241 (789)
Q Consensus 164 dG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSp--Dg~~la~~~~~~~~~~~~~~~~~~ 241 (789)
-|++||..+.+ +.-.+|.+...++...+.++. +..|+| ..+.|.. -|..||..+.+
T Consensus 22 ygkrlATcsSD--~tVkIf~v~~n~~s~ll~~L~-Gh~GPV------wqv~wahPk~G~iLAScsYD------------- 79 (299)
T KOG1332|consen 22 YGKRLATCSSD--GTVKIFEVRNNGQSKLLAELT-GHSGPV------WKVAWAHPKFGTILASCSYD------------- 79 (299)
T ss_pred hcceeeeecCC--ccEEEEEEcCCCCceeeeEec-CCCCCe------eEEeecccccCcEeeEeecC-------------
Confidence 48888877654 233455555555444444443 444555 6777865 68878776543
Q ss_pred CCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC-CCCCCccceEEEeeCCCCCccEEEEEeecC
Q 003886 242 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 320 (789)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~-~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~ 320 (789)
..+.+|.-++|...++.. ...+.++..++|.|.+-.. +++.+..+
T Consensus 80 -------------------------------gkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl---~LacasSD 125 (299)
T KOG1332|consen 80 -------------------------------GKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGL---LLACASSD 125 (299)
T ss_pred -------------------------------ceEEEEecCCCchhhhhhhhhhcccceeecccccccce---EEEEeeCC
Confidence 346677766765444411 2234578899999988761 34444222
Q ss_pred CceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC--CeeecCCCCCccCcceecCC---C-----------C
Q 003886 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVVNLTESISSAFFPRFSPD---G-----------K 384 (789)
Q Consensus 321 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~Lt~~~~~~~~p~~SpD---G-----------~ 384 (789)
....|..++- +++ ..+....+...+.+..|.|- | +
T Consensus 126 ------------G~vsvl~~~~-----------------~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~k 176 (299)
T KOG1332|consen 126 ------------GKVSVLTYDS-----------------SGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVK 176 (299)
T ss_pred ------------CcEEEEEEcC-----------------CCCccchhhhhccccccceeeecCcCCCccccccCcccccc
Confidence 2223444443 211 12223334445777888875 5 2
Q ss_pred EEEEEecCCCCCCCCccccceeEEeecCCCCCCC--cccceeeEEeeeeccCCCCCccccccCCCCCccccCC---CEEE
Q 003886 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS--SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG---CTML 459 (789)
Q Consensus 385 ~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~--~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg---~~l~ 459 (789)
+|+.... .+.+.+|+.+.+..+. ...+..+ -+..++|.|.- +.-+
T Consensus 177 rlvSgGc-----------Dn~VkiW~~~~~~w~~e~~l~~H~d-------------------wVRDVAwaP~~gl~~s~i 226 (299)
T KOG1332|consen 177 RLVSGGC-----------DNLVKIWKFDSDSWKLERTLEGHKD-------------------WVRDVAWAPSVGLPKSTI 226 (299)
T ss_pred eeeccCC-----------ccceeeeecCCcchhhhhhhhhcch-------------------hhhhhhhccccCCCceee
Confidence 2322221 1335555555432210 0111111 23466777743 3445
Q ss_pred EEEEeCCeEEEEEEECCCCcEE--EecCCCCCceeEEeeecCCEEEEEEeC
Q 003886 460 LSSIWGSSQVIISVNVSSGELL--RITPAESNFSWSLLTLDGDNIIAVSSS 508 (789)
Q Consensus 460 ~~~~~~~~~~l~~~dl~tg~~~--~lt~~~~~~~~~~~s~dg~~l~~~~ss 508 (789)
.+.+.+++.-||..+.+.++.+ .+..-........+|..|+.|.....+
T Consensus 227 AS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~Gd 277 (299)
T KOG1332|consen 227 ASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGD 277 (299)
T ss_pred EEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCC
Confidence 6667788888999885444322 232222233456889988877665543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0043 Score=64.45 Aligned_cols=150 Identities=16% Similarity=0.189 Sum_probs=86.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCC-ceeEEEecCCCccccccCCCcccceeecCCC---CEEEEEee
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDE---TLIAYVAE 227 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~-~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg---~~la~~~~ 227 (789)
+.+-...|||||+.|+++.... ..+| .+| ...+.+.. + .++.|...+|+-|+ ....+...
T Consensus 187 ~eV~DL~FS~dgk~lasig~d~------~~VW~~~~g~~~a~~t~~--~------k~~~~~~cRF~~d~~~~~l~laa~~ 252 (398)
T KOG0771|consen 187 AEVKDLDFSPDGKFLASIGADS------ARVWSVNTGAALARKTPF--S------KDEMFSSCRFSVDNAQETLRLAASQ 252 (398)
T ss_pred CccccceeCCCCcEEEEecCCc------eEEEEeccCchhhhcCCc--c------cchhhhhceecccCCCceEEEEEec
Confidence 4577899999999999996542 4556 233 22222221 1 23456889999988 33333322
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEc-cCCceEeccCCCCCCccceEEEeeCC
Q 003886 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI-NSGEVQAVKGIPKSLSVGQVVWAPLN 306 (789)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~-~~g~~~~l~~~~~~~~~~~~~wSPDg 306 (789)
.+... -....+.+|+- .-.+.++. +...-.+..+.-|+||
T Consensus 253 ~~~~~-------------------------------------v~~~~~~~w~~~~~l~~~~~--~~~~~siSsl~VS~dG 293 (398)
T KOG0771|consen 253 FPGGG-------------------------------------VRLCDISLWSGSNFLRLRKK--IKRFKSISSLAVSDDG 293 (398)
T ss_pred CCCCc-------------------------------------eeEEEeeeeccccccchhhh--hhccCcceeEEEcCCC
Confidence 22110 01122333332 11233333 4445578899999999
Q ss_pred CCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCC--CCCccCcceecCCCC
Q 003886 307 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE--SISSAFFPRFSPDGK 384 (789)
Q Consensus 307 ~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~--~~~~~~~p~~SpDG~ 384 (789)
+. ++..+++. .+-+++. ..-+..++.. +.+.++...||||-+
T Consensus 294 kf----~AlGT~dG---------------sVai~~~-----------------~~lq~~~~vk~aH~~~VT~ltF~Pdsr 337 (398)
T KOG0771|consen 294 KF----LALGTMDG---------------SVAIYDA-----------------KSLQRLQYVKEAHLGFVTGLTFSPDSR 337 (398)
T ss_pred cE----EEEeccCC---------------cEEEEEe-----------------ceeeeeEeehhhheeeeeeEEEcCCcC
Confidence 98 77776432 4555554 2223323322 355789999999999
Q ss_pred EEEEEecC
Q 003886 385 FLVFLSAK 392 (789)
Q Consensus 385 ~la~~s~~ 392 (789)
.++-++..
T Consensus 338 ~~~svSs~ 345 (398)
T KOG0771|consen 338 YLASVSSD 345 (398)
T ss_pred cccccccC
Confidence 98876654
|
|
| >PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0055 Score=62.09 Aligned_cols=177 Identities=14% Similarity=0.115 Sum_probs=87.9
Q ss_pred EEEEEcCCCCCCCchhhHHHHHHHH-HCCc----EEEEEcCCCCCCCCchhhc----cCC---CCCCc-----ccHHHHH
Q 003886 594 LIVVLHGGPHSVSLSSYSKSLAFLS-SVGY----SLLIVNYRGSLGFGEEALQ----SLP---GKVGS-----QDVNDVL 656 (789)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la-~~Gy----~V~~~d~rGs~G~G~~~~~----~~~---~~~~~-----~~~~D~~ 656 (789)
..||+||..++ ...|...++.+. +.|. .++.++.-|..-+...+.. .+- -.... ....-+.
T Consensus 13 PTifihG~~gt--~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~wl~ 90 (255)
T PF06028_consen 13 PTIFIHGYGGT--ANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKWLK 90 (255)
T ss_dssp EEEEE--TTGG--CCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHHHH
T ss_pred cEEEECCCCCC--hhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHHHH
Confidence 35588996554 556777788886 5553 3444444443111111100 000 01111 1234466
Q ss_pred HHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCC-----ceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccc
Q 003886 657 TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 731 (789)
Q Consensus 657 ~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~-----~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (789)
+++.+|.++- .-+++-++||||||..++.++..+.. .+..+|.+++.++-... ...... . ..+..
T Consensus 91 ~vl~~L~~~Y--~~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~--~~~~~~--~-~~~~~--- 160 (255)
T PF06028_consen 91 KVLKYLKKKY--HFKKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILG--MNDDQN--Q-NDLNK--- 160 (255)
T ss_dssp HHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTC--CSC-TT--T-T-CST---
T ss_pred HHHHHHHHhc--CCCEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCcccc--ccccch--h-hhhcc---
Confidence 7788888773 45789999999999999998887421 45666766655442111 000000 0 00000
Q ss_pred cccCCCCChhhHHHHHhcCcc-ccCCCCCCCEEEEEeC------CCCCCChHHHHHHHHHCCC
Q 003886 732 DSFTESPSVEDLTRFHSKSPI-SHISKVKTPTIFLLGA------QDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~sp~-~~~~~i~~P~Lii~G~------~D~~vp~~~~~~l~~~l~~ 787 (789)
.+ |. .....|.+.-.. ..--.-...+|-|.|. .|-+||...++.+..-++.
T Consensus 161 ---~g-p~-~~~~~y~~l~~~~~~~~p~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~ 218 (255)
T PF06028_consen 161 ---NG-PK-SMTPMYQDLLKNRRKNFPKNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKN 218 (255)
T ss_dssp ---T--BS-S--HHHHHHHHTHGGGSTTT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTT
T ss_pred ---cC-Cc-ccCHHHHHHHHHHHhhCCCCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhc
Confidence 01 11 111222211111 0111123579999998 8999999999888777754
|
; PDB: 3LP5_A 3FLE_A 3DS8_A. |
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.035 Score=61.34 Aligned_cols=119 Identities=17% Similarity=0.142 Sum_probs=72.0
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccC
Q 003886 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 375 (789)
Q Consensus 296 ~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~ 375 (789)
.+..++.||+|+- |+-.. +... .....|++++.. .-.+...|..+...++
T Consensus 527 Ev~~l~~s~~gnl----iASaC-KS~~---------~ehAvI~lw~t~----------------~W~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 527 EVYALAISPTGNL----IASAC-KSSL---------KEHAVIRLWNTA----------------NWLQVQELEGHSLTVT 576 (764)
T ss_pred eEEEEEecCCCCE----Eeehh-hhCC---------ccceEEEEEecc----------------chhhhheecccceEEE
Confidence 4557889999985 55443 2221 123467777752 2234456778888899
Q ss_pred cceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCC--Cc--ccceeeEEeeeeccCCCCCccccccCCCCCcc
Q 003886 376 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF--SS--LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 451 (789)
Q Consensus 376 ~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~--~~--t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~w 451 (789)
..+|||||++|+-.+.+. +..||-. ..+..- .. ......+ +-...|
T Consensus 577 ~l~FSpdg~~LLsvsRDR---------t~sl~~~--~~~~~~e~~fa~~k~HtRI-------------------IWdcsW 626 (764)
T KOG1063|consen 577 RLAFSPDGRYLLSVSRDR---------TVSLYEV--QEDIKDEFRFACLKAHTRI-------------------IWDCSW 626 (764)
T ss_pred EEEECCCCcEEEEeecCc---------eEEeeee--ecccchhhhhccccccceE-------------------EEEccc
Confidence 999999999999888664 2234433 111110 00 0111111 225579
Q ss_pred ccCCCEEEEEEEeCCeEEEEEEEC
Q 003886 452 LSDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 452 s~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
+||+++ +++++++-...+|...-
T Consensus 627 ~pde~~-FaTaSRDK~VkVW~~~~ 649 (764)
T KOG1063|consen 627 SPDEKY-FATASRDKKVKVWEEPD 649 (764)
T ss_pred Ccccce-eEEecCCceEEEEeccC
Confidence 999987 57777777778887653
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.02 Score=63.23 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=73.3
Q ss_pred cCCC-cccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCC
Q 003886 205 YADG-WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 283 (789)
Q Consensus 205 ~~d~-~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g 283 (789)
|..+ ....+.-||+|+.||....... +....|++|+..+=
T Consensus 522 YGHGyEv~~l~~s~~gnliASaCKS~~---------------------------------------~ehAvI~lw~t~~W 562 (764)
T KOG1063|consen 522 YGHGYEVYALAISPTGNLIASACKSSL---------------------------------------KEHAVIRLWNTANW 562 (764)
T ss_pred ccCceeEEEEEecCCCCEEeehhhhCC---------------------------------------ccceEEEEEeccch
Confidence 4433 4467888999998887654321 13467999987664
Q ss_pred c-eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC
Q 003886 284 E-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL 362 (789)
Q Consensus 284 ~-~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 362 (789)
. ...| ...++.+.+.+|||||+. |+-++. +|.-.||-..-. .. ..-
T Consensus 563 ~~~~~L--~~HsLTVT~l~FSpdg~~----LLsvsR-------------DRt~sl~~~~~~---~~-----------~e~ 609 (764)
T KOG1063|consen 563 LQVQEL--EGHSLTVTRLAFSPDGRY----LLSVSR-------------DRTVSLYEVQED---IK-----------DEF 609 (764)
T ss_pred hhhhee--cccceEEEEEEECCCCcE----EEEeec-------------CceEEeeeeecc---cc-----------hhh
Confidence 3 3345 455678999999999999 888872 122345544210 00 001
Q ss_pred CeeecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 363 PVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 363 ~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
....+..+..-+..-.|+||+++++..|.+.
T Consensus 610 ~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK 640 (764)
T KOG1063|consen 610 RFACLKAHTRIIWDCSWSPDEKYFATASRDK 640 (764)
T ss_pred hhccccccceEEEEcccCcccceeEEecCCc
Confidence 1122444555677889999999977777554
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0036 Score=72.71 Aligned_cols=250 Identities=13% Similarity=0.177 Sum_probs=136.3
Q ss_pred cEEEEeCCCCCe----EEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCC-EEEEEeec
Q 003886 156 ASAVVPSPSGSK----LLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAEE 228 (789)
Q Consensus 156 ~~~~~~SPdG~~----la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~-~la~~~~~ 228 (789)
-...+|++.|.. ||= ..++|.-.+|.... .+....++.....++|.| .++.|+|... .||-.+.+
T Consensus 67 F~kL~W~~~g~~~~GlIaG--G~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V------~gLDfN~~q~nlLASGa~~ 138 (1049)
T KOG0307|consen 67 FNKLAWGSYGSHSHGLIAG--GLEDGNIVLYDPASIIANASEEVLATKSKHTGPV------LGLDFNPFQGNLLASGADD 138 (1049)
T ss_pred ceeeeecccCCCccceeec--cccCCceEEecchhhccCcchHHHhhhcccCCce------eeeeccccCCceeeccCCC
Confidence 456789999988 332 22223322222221 233333333344566777 8899999877 66665554
Q ss_pred CCCCCCCccCCCCCCCCCCcC--CCCCCCcceeeCCcccc-cCCccCceEEEEEccCCc-eEeccCCCCCCccceEEEee
Q 003886 229 PSPSKPTFSLGSTKGGSSDKD--CNSWKGQGDWEEDWGET-YAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAP 304 (789)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~g~~-~~~~~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSP 304 (789)
.. ...|+....++...... ..+-+....|...-... .++.......+||+...+ +..+..+........+.|.|
T Consensus 139 ge--I~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP 216 (1049)
T KOG0307|consen 139 GE--ILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHP 216 (1049)
T ss_pred Cc--EEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCC
Confidence 43 23344221111111100 00111111222211111 122334578889997664 33332233334577999999
Q ss_pred CCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCC
Q 003886 305 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK 384 (789)
Q Consensus 305 Dg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~ 384 (789)
|.-. -+.++.+++ +..-|-.+|++. .+...+.++.+...+....|++.+.
T Consensus 217 ~~aT----ql~~As~dd-----------~~PviqlWDlR~---------------assP~k~~~~H~~GilslsWc~~D~ 266 (1049)
T KOG0307|consen 217 DHAT----QLLVASGDD-----------SAPVIQLWDLRF---------------ASSPLKILEGHQRGILSLSWCPQDP 266 (1049)
T ss_pred CCce----eeeeecCCC-----------CCceeEeecccc---------------cCCchhhhcccccceeeeccCCCCc
Confidence 9876 444443322 223466666642 5666778888888899999999998
Q ss_pred EEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe
Q 003886 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 464 (789)
Q Consensus 385 ~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~ 464 (789)
.++..+.++ +++.+|+.++++.. .-+....+.+| .+.|.|-.-.++..+.-
T Consensus 267 ~lllSsgkD----------~~ii~wN~~tgEvl----------~~~p~~~nW~f---------dv~w~pr~P~~~A~asf 317 (1049)
T KOG0307|consen 267 RLLLSSGKD----------NRIICWNPNTGEVL----------GELPAQGNWCF---------DVQWCPRNPSVMAAASF 317 (1049)
T ss_pred hhhhcccCC----------CCeeEecCCCceEe----------eecCCCCccee---------eeeecCCCcchhhhhee
Confidence 888888665 47999998886653 11111112222 34566655556556666
Q ss_pred CCeEEEEEEE
Q 003886 465 GSSQVIISVN 474 (789)
Q Consensus 465 ~~~~~l~~~d 474 (789)
+|...||.+-
T Consensus 318 dgkI~I~sl~ 327 (1049)
T KOG0307|consen 318 DGKISIYSLQ 327 (1049)
T ss_pred ccceeeeeee
Confidence 7777777764
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00022 Score=75.73 Aligned_cols=92 Identities=15% Similarity=0.279 Sum_probs=59.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
+.+....|||||++||.|+.++ .+.|- +..++.-+. ...-|. +.++.||||||+|+...+++-.
T Consensus 291 g~in~f~FS~DG~~LA~VSqDG-----fLRvF~fdt~eLlg~m---kSYFGG------LLCvcWSPDGKyIvtGGEDDLV 356 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDG-----FLRIFDFDTQELLGVM---KSYFGG------LLCVCWSPDGKYIVTGGEDDLV 356 (636)
T ss_pred ccccceeEcCCCceEEEEecCc-----eEEEeeccHHHHHHHH---Hhhccc------eEEEEEcCCccEEEecCCcceE
Confidence 4577889999999999998875 33333 222221111 111111 2689999999999998888754
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeC
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 261 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (789)
. .|....++..+.-..+++|+....|++
T Consensus 357 t--VwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 357 T--VWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred E--EEEeccceEEEeccccccceeeEeecc
Confidence 3 344444555555667888888777764
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.021 Score=62.03 Aligned_cols=237 Identities=15% Similarity=0.138 Sum_probs=123.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEE-eecCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV-AEEPS 230 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~-~~~~~ 230 (789)
+.+...+..|.|.+||-.++.+ ...|| .+|...+.+.+...+ .+++|+|.++.=+.+ +....
T Consensus 401 g~Vr~iSvdp~G~wlasGsdDG-----tvriWEi~TgRcvr~~~~d~~I----------~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLASGSDDG-----TVRIWEIATGRCVRTVQFDSEI----------RSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred CeEEEEEecCCcceeeecCCCC-----cEEEEEeecceEEEEEeeccee----------EEEEecCCCCceeEEEEecCc
Confidence 3477888999999999765543 45666 466677777765555 899999998763332 22221
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccC---Cc--eEeccCCCCCCccceEEEeeC
Q 003886 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS---GE--VQAVKGIPKSLSVGQVVWAPL 305 (789)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~---g~--~~~l~~~~~~~~~~~~~wSPD 305 (789)
.-..+...+.. ... ...+..+..- . .......++..|.... ++ +... +...-.+.++.|.-+
T Consensus 466 --~~ivnp~~G~~---~e~---~~t~ell~~~--~-~~~~p~~~~~~W~~~~~~e~~~~v~~~--I~~~k~i~~vtWHrk 532 (733)
T KOG0650|consen 466 --VLIVNPIFGDR---LEV---GPTKELLASA--P-NESEPDAAVVTWSRASLDELEKGVCIV--IKHPKSIRQVTWHRK 532 (733)
T ss_pred --eEEeCccccch---hhh---cchhhhhhcC--C-CccCCcccceeechhhhhhhccceEEE--EecCCccceeeeecC
Confidence 10111111100 000 0000000000 0 0000122444444331 11 2222 233446789999999
Q ss_pred CCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCE
Q 003886 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF 385 (789)
Q Consensus 306 g~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~ 385 (789)
|.+ |+.+.-... ...+++.++. .......+....+.+....|.|---+
T Consensus 533 GDY----latV~~~~~------------~~~VliHQLS----------------K~~sQ~PF~kskG~vq~v~FHPs~p~ 580 (733)
T KOG0650|consen 533 GDY----LATVMPDSG------------NKSVLIHQLS----------------KRKSQSPFRKSKGLVQRVKFHPSKPY 580 (733)
T ss_pred Cce----EEEeccCCC------------cceEEEEecc----------------cccccCchhhcCCceeEEEecCCCce
Confidence 999 888874332 2367777772 11111223334556778889888777
Q ss_pred EEEEecCCCCCCCCccccceeEEeecCCCCCCC-cccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe
Q 003886 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 464 (789)
Q Consensus 386 la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~-~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~ 464 (789)
|+..+.+ .+.+||+..+.... +..+. ..+..++.+|.|..|++.+ .
T Consensus 581 lfVaTq~------------~vRiYdL~kqelvKkL~tg~--------------------kwiS~msihp~GDnli~gs-~ 627 (733)
T KOG0650|consen 581 LFVATQR------------SVRIYDLSKQELVKKLLTGS--------------------KWISSMSIHPNGDNLILGS-Y 627 (733)
T ss_pred EEEEecc------------ceEEEehhHHHHHHHHhcCC--------------------eeeeeeeecCCCCeEEEec-C
Confidence 7655544 48899987643321 11111 1244667888888887654 3
Q ss_pred CCeEEEEEEECCCCcEEEe
Q 003886 465 GSSQVIISVNVSSGELLRI 483 (789)
Q Consensus 465 ~~~~~l~~~dl~tg~~~~l 483 (789)
..+.-.|-+|+.+.-.+.+
T Consensus 628 d~k~~WfDldlsskPyk~l 646 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPYKTL 646 (733)
T ss_pred CCeeEEEEcccCcchhHHh
Confidence 3333333444544444443
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.006 Score=61.19 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=50.6
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCcc-CCCCCC-C--CCCcCCCCCCC-------cceee-------CCcccccCCccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFS-LGSTKG-G--SSDKDCNSWKG-------QGDWE-------EDWGETYAGKRQ 272 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~-~~~~~~-~--~~~~~~~~~~~-------~~~~~-------~d~g~~~~~~~~ 272 (789)
.+..|||||.-|+..+++..-...... ..+.+. . ...+.+..++. .+.|- |+-.--.+..+.
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 578999999999988877643221111 111111 1 11111222221 12221 111111233345
Q ss_pred ceEEEEEccCCceEeccCC----CCCCccceEEEeeCCCC
Q 003886 273 PSLFVININSGEVQAVKGI----PKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~----~~~~~~~~~~wSPDg~~ 308 (789)
.-|.+||..+|+.+.-... ..-....++.|||||.+
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeq 172 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQ 172 (406)
T ss_pred CceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCe
Confidence 6799999999988754200 01114458899999998
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.14 Score=62.11 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=26.9
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEe
Q 003886 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 317 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~ 317 (789)
...|.||+.+ |+..... -+-+.-...++|-|.|.. |+-+.
T Consensus 236 ~R~iRVy~Re-G~L~stS-E~v~gLe~~l~WrPsG~l----IA~~q 275 (928)
T PF04762_consen 236 RRVIRVYSRE-GELQSTS-EPVDGLEGALSWRPSGNL----IASSQ 275 (928)
T ss_pred eeEEEEECCC-ceEEecc-ccCCCccCCccCCCCCCE----EEEEE
Confidence 4678888876 5555442 122334568899999998 87776
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.098 Score=63.37 Aligned_cols=62 Identities=18% Similarity=0.155 Sum_probs=42.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEE----e-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeec
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFEL----W-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i----~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~ 228 (789)
..+....+-+|...|.++...+ .++.+ . ...+.+-+-.+..++ .+.+||||+..||++...
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~G----di~~~~~~~~~~~~~~E~VG~vd~GI----------~a~~WSPD~Ella~vT~~ 141 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASG----DIILVREDPDPDEDEIEIVGSVDSGI----------LAASWSPDEELLALVTGE 141 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCc----eEEEEEccCCCCCceeEEEEEEcCcE----------EEEEECCCcCEEEEEeCC
Confidence 3477778888988888776654 36777 2 222333333444455 899999999999998755
Q ss_pred C
Q 003886 229 P 229 (789)
Q Consensus 229 ~ 229 (789)
.
T Consensus 142 ~ 142 (928)
T PF04762_consen 142 G 142 (928)
T ss_pred C
Confidence 3
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.045 Score=58.10 Aligned_cols=218 Identities=11% Similarity=0.087 Sum_probs=131.2
Q ss_pred CCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe
Q 003886 106 GNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW 185 (789)
Q Consensus 106 pdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~ 185 (789)
.||+.+|- +...+.+.++++.. -.-.+++..+. ..+....|+|++.+++....++ .+..+|
T Consensus 78 ~DG~Llaa---------GD~sG~V~vfD~k~-r~iLR~~~ah~-----apv~~~~f~~~d~t~l~s~sDd----~v~k~~ 138 (487)
T KOG0310|consen 78 SDGRLLAA---------GDESGHVKVFDMKS-RVILRQLYAHQ-----APVHVTKFSPQDNTMLVSGSDD----KVVKYW 138 (487)
T ss_pred cCCeEEEc---------cCCcCcEEEecccc-HHHHHHHhhcc-----CceeEEEecccCCeEEEecCCC----ceEEEE
Confidence 67766653 33455666666421 01123444444 2366778999999887654443 255566
Q ss_pred c-CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcc
Q 003886 186 S-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWG 264 (789)
Q Consensus 186 ~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g 264 (789)
+ .+... .+++. +..+.| .+.+|+|-..+|++...
T Consensus 139 d~s~a~v-~~~l~-~htDYV------R~g~~~~~~~hivvtGs------------------------------------- 173 (487)
T KOG0310|consen 139 DLSTAYV-QAELS-GHTDYV------RCGDISPANDHIVVTGS------------------------------------- 173 (487)
T ss_pred EcCCcEE-EEEec-CCccee------EeeccccCCCeEEEecC-------------------------------------
Confidence 2 22222 33332 333334 78999999988888532
Q ss_pred cccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEeccc
Q 003886 265 ETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 344 (789)
Q Consensus 265 ~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 344 (789)
-+..|.+||..+...+.+. ......+..+.+-|.|.. |+..+ ...+.++|+-
T Consensus 174 ------YDg~vrl~DtR~~~~~v~e-lnhg~pVe~vl~lpsgs~----iasAg----------------Gn~vkVWDl~- 225 (487)
T KOG0310|consen 174 ------YDGKVRLWDTRSLTSRVVE-LNHGCPVESVLALPSGSL----IASAG----------------GNSVKVWDLT- 225 (487)
T ss_pred ------CCceEEEEEeccCCceeEE-ecCCCceeeEEEcCCCCE----EEEcC----------------CCeEEEEEec-
Confidence 2356788887665333332 456678889999999987 77665 1267788872
Q ss_pred ccchhhhhhhhcCCCCCCCe-eecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccce
Q 003886 345 YKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI 423 (789)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~-~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~ 423 (789)
.+++. ....++.-.++..++.-||..|+-.+-+. ++.++|...
T Consensus 226 ---------------~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-----------~VKVfd~t~---------- 269 (487)
T KOG0310|consen 226 ---------------TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR-----------HVKVFDTTN---------- 269 (487)
T ss_pred ---------------CCceehhhhhcccceEEEEEeecCCceEeeccccc-----------ceEEEEccc----------
Confidence 23333 33344666788999999999887666443 477777432
Q ss_pred eeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEE
Q 003886 424 VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 461 (789)
Q Consensus 424 ~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~ 461 (789)
..++.-+ .|| ..+.++..+||++.+++-
T Consensus 270 ~Kvv~s~------~~~----~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 270 YKVVHSW------KYP----GPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred eEEEEee------ecc----cceeeEEecCCCceEEEe
Confidence 1223222 233 256778889998877653
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.17 Score=55.22 Aligned_cols=210 Identities=15% Similarity=0.141 Sum_probs=121.9
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
....+.+|+|++++..... ...+..++ ..........+.... ..+.++||++.++.+....
T Consensus 76 p~~i~v~~~~~~vyv~~~~---~~~v~vid~~~~~~~~~~~vG~~P----------~~~~~~~~~~~vYV~n~~~----- 137 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGD---SNTVSVIDTATNTVLGSIPVGLGP----------VGLAVDPDGKYVYVANAGN----- 137 (381)
T ss_pred ccceeeCCCCCeEEEecCC---CCeEEEEcCcccceeeEeeeccCC----------ceEEECCCCCEEEEEeccc-----
Confidence 3456789999987554322 22455666 332333333333233 5899999999887653211
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~ 314 (789)
....+.++|..++++... .+........+++|||+. +
T Consensus 138 ------------------------------------~~~~vsvid~~t~~~~~~--~~vG~~P~~~a~~p~g~~-----v 174 (381)
T COG3391 138 ------------------------------------GNNTVSVIDAATNKVTAT--IPVGNTPTGVAVDPDGNK-----V 174 (381)
T ss_pred ------------------------------------CCceEEEEeCCCCeEEEE--EecCCCcceEEECCCCCe-----E
Confidence 236788999988877655 333333478899999996 5
Q ss_pred EEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeee-----cCCCCCccCcceecCCCCEEEEE
Q 003886 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-----LTESISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----Lt~~~~~~~~p~~SpDG~~la~~ 389 (789)
|+.+.. ...|..+|. .+....+ .-..........++|||++++..
T Consensus 175 yv~~~~-------------~~~v~vi~~-----------------~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~ 224 (381)
T COG3391 175 YVTNSD-------------DNTVSVIDT-----------------SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVA 224 (381)
T ss_pred EEEecC-------------CCeEEEEeC-----------------CCcceeccccccccccCCCCceEEECCCCCEEEEE
Confidence 555422 236888886 3333332 11112245678999999976544
Q ss_pred ecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEE
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (789)
-... ....+.++|..++......... . . . .......+|+|+.+|+.... ...
T Consensus 225 ~~~~--------~~~~v~~id~~~~~v~~~~~~~----~-----~-~--------~~~~v~~~p~g~~~yv~~~~--~~~ 276 (381)
T COG3391 225 NDGS--------GSNNVLKIDTATGNVTATDLPV----G-----S-G--------APRGVAVDPAGKAAYVANSQ--GGT 276 (381)
T ss_pred eccC--------CCceEEEEeCCCceEEEecccc----c-----c-C--------CCCceeECCCCCEEEEEecC--CCe
Confidence 4322 1246888887664432110000 0 0 0 11245678999988776544 446
Q ss_pred EEEEECCCCcEEEec
Q 003886 470 IISVNVSSGELLRIT 484 (789)
Q Consensus 470 l~~~dl~tg~~~~lt 484 (789)
+..+|..+..+....
T Consensus 277 V~vid~~~~~v~~~~ 291 (381)
T COG3391 277 VSVIDGATDRVVKTG 291 (381)
T ss_pred EEEEeCCCCceeeee
Confidence 777887776665543
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.042 Score=53.33 Aligned_cols=91 Identities=12% Similarity=0.070 Sum_probs=51.2
Q ss_pred eeecCCCCCccCcceecCCC----CEEEEEecCCCCCCCCccccceeEEeecC--CCCCCCcccceeeEEeeeeccCCCC
Q 003886 364 VVNLTESISSAFFPRFSPDG----KFLVFLSAKSSVDSGAHSATDSLHRIDWP--TNGNFSSLEKIVDVIPVVQCAEGDC 437 (789)
Q Consensus 364 ~~~Lt~~~~~~~~p~~SpDG----~~la~~s~~~~~~~g~~~~~~~L~~~d~~--~~~~~~~t~~~~~v~~~~~~~~~~~ 437 (789)
.+.|..+...++..+|.|.- .+||..+++. .+.+|.-. .+..+ .+ +. +.
T Consensus 200 e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg-----------~viIwt~~~e~e~wk-~t-----ll--------~~ 254 (299)
T KOG1332|consen 200 ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG-----------TVIIWTKDEEYEPWK-KT-----LL--------EE 254 (299)
T ss_pred hhhhhhcchhhhhhhhccccCCCceeeEEecCCC-----------cEEEEEecCccCccc-cc-----cc--------cc
Confidence 34577788888888898863 3466656543 24444322 11111 11 00 12
Q ss_pred CccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecC
Q 003886 438 FPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 485 (789)
Q Consensus 438 f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~ 485 (789)
||. -+.+..||.-|..|.+ +..+....||.=++ .|+.+++..
T Consensus 255 f~~----~~w~vSWS~sGn~LaV-s~GdNkvtlwke~~-~Gkw~~v~~ 296 (299)
T KOG1332|consen 255 FPD----VVWRVSWSLSGNILAV-SGGDNKVTLWKENV-DGKWEEVGE 296 (299)
T ss_pred CCc----ceEEEEEeccccEEEE-ecCCcEEEEEEeCC-CCcEEEccc
Confidence 221 2346789999985544 44556677887766 577766643
|
|
| >KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0046 Score=64.52 Aligned_cols=133 Identities=20% Similarity=0.295 Sum_probs=81.6
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHH----HHHHHHCCcEEEEEcCCC---CCCCCchhhccCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS----LAFLSSVGYSLLIVNYRG---SLGFGEEALQSLP 644 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~----~~~la~~Gy~V~~~d~rG---s~G~G~~~~~~~~ 644 (789)
+..+++-.+..-..+-...+.|+.++. |.-+. ...|..+ ...-.+++-.+|.+++|= |.-||...... .
T Consensus 61 ~~~tF~qRylin~~fw~~g~gPIffYt-GNEGd--ie~Fa~ntGFm~D~Ap~~~AllVFaEHRyYGeS~PFG~~s~k~-~ 136 (492)
T KOG2183|consen 61 DNKTFDQRYLINDDFWKKGEGPIFFYT-GNEGD--IEWFANNTGFMWDLAPELKALLVFAEHRYYGESLPFGSQSYKD-A 136 (492)
T ss_pred CccceeeEEEEecccccCCCCceEEEe-CCccc--HHHHHhccchHHhhhHhhCceEEEeehhccccCCCCcchhccC-h
Confidence 445566556555554444446766664 42221 2222221 222336778899999983 22233331111 1
Q ss_pred CCCC----cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEE-EeCCccch
Q 003886 645 GKVG----SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA-ARNPLCNL 708 (789)
Q Consensus 645 ~~~~----~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v-~~~pv~~~ 708 (789)
.+.+ .+..+|.+..+.+|+.........|+++|+||||++++|.-.++|+.+.++. +.+|+.-+
T Consensus 137 ~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~GAlAaSAPvl~f 205 (492)
T KOG2183|consen 137 RHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVLGALAASAPVLYF 205 (492)
T ss_pred hhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhhhhhhccCceEee
Confidence 2222 3346788888888887644567889999999999999999999999877654 45676544
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.12 Score=52.05 Aligned_cols=142 Identities=18% Similarity=0.222 Sum_probs=84.8
Q ss_pred CceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCC--eEEEEecCCCCCCeEEEEe
Q 003886 108 GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGS--KLLVVRNPENESPIQFELW 185 (789)
Q Consensus 108 g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~--~la~~~~~~~~~~~~~~i~ 185 (789)
|..-+...+.+-++++...-.|.++++... .+.--|.... +.+.+..|+|+-. +|+-.++++ .+.+|
T Consensus 44 ~sitavAVs~~~~aSGssDetI~IYDm~k~-~qlg~ll~Ha-----gsitaL~F~~~~S~shLlS~sdDG-----~i~iw 112 (362)
T KOG0294|consen 44 GSITALAVSGPYVASGSSDETIHIYDMRKR-KQLGILLSHA-----GSITALKFYPPLSKSHLLSGSDDG-----HIIIW 112 (362)
T ss_pred cceeEEEecceeEeccCCCCcEEEEeccch-hhhcceeccc-----cceEEEEecCCcchhheeeecCCC-----cEEEE
Confidence 333344445555566667778888887433 2222222222 5577888888876 777665554 56788
Q ss_pred cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCccc
Q 003886 186 SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGE 265 (789)
Q Consensus 186 ~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~ 265 (789)
..+....+-.+. ...+.| ..++..|-|+ ||....
T Consensus 113 ~~~~W~~~~slK-~H~~~V------t~lsiHPS~K-LALsVg-------------------------------------- 146 (362)
T KOG0294|consen 113 RVGSWELLKSLK-AHKGQV------TDLSIHPSGK-LALSVG-------------------------------------- 146 (362)
T ss_pred EcCCeEEeeeec-cccccc------ceeEecCCCc-eEEEEc--------------------------------------
Confidence 666553333332 222334 7899999997 554422
Q ss_pred ccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEe
Q 003886 266 TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 317 (789)
Q Consensus 266 ~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~ 317 (789)
++..|..||+-.|+.-.+ .+-.-....+.|+|.|.+ .+.+.
T Consensus 147 -----~D~~lr~WNLV~Gr~a~v--~~L~~~at~v~w~~~Gd~----F~v~~ 187 (362)
T KOG0294|consen 147 -----GDQVLRTWNLVRGRVAFV--LNLKNKATLVSWSPQGDH----FVVSG 187 (362)
T ss_pred -----CCceeeeehhhcCcccee--eccCCcceeeEEcCCCCE----EEEEe
Confidence 235677888877765444 222333456999999998 66655
|
|
| >PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0068 Score=61.04 Aligned_cols=115 Identities=9% Similarity=0.124 Sum_probs=66.9
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCc--EEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcC
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 666 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy--~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 666 (789)
.....++||+||.-.+ .........+.....|+ .++.+..++.+. -..+.. ..........++...++.|.+.
T Consensus 15 ~~~~~vlvfVHGyn~~-f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~-~~~Y~~--d~~~a~~s~~~l~~~L~~L~~~- 89 (233)
T PF05990_consen 15 SPDKEVLVFVHGYNNS-FEDALRRAAQLAHDLGFPGVVILFSWPSDGS-LLGYFY--DRESARFSGPALARFLRDLARA- 89 (233)
T ss_pred CCCCeEEEEEeCCCCC-HHHHHHHHHHHHHHhCCCceEEEEEcCCCCC-hhhhhh--hhhhHHHHHHHHHHHHHHHHhc-
Confidence 3467899999994443 11122223333344444 788888874221 111110 0011112234555566665555
Q ss_pred CCCCccEEEEEcCccHHHHHHHHHh----CC-----CceeEEEEeCCccchh
Q 003886 667 LANPSKVTVVGGSHGGFLTTHLIGQ----AP-----DKFVAAAARNPLCNLA 709 (789)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~~~~----~p-----~~~~a~v~~~pv~~~~ 709 (789)
....+|.|++||||+.+.+.++.. .+ .+|..+|+.+|-.+..
T Consensus 90 -~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d 140 (233)
T PF05990_consen 90 -PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDND 140 (233)
T ss_pred -cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHH
Confidence 356899999999999999987653 11 2677888888876653
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.038 Score=57.79 Aligned_cols=186 Identities=12% Similarity=0.112 Sum_probs=109.0
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CC-ceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS--QS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~-~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
.+......|.|+|++..++++ .|...+ +| ...++.+-..++ .+....|.|||-.++....+ .
T Consensus 305 ~V~~ls~h~tgeYllsAs~d~-----~w~Fsd~~~g~~lt~vs~~~s~v--------~~ts~~fHpDgLifgtgt~d--~ 369 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASNDG-----TWAFSDISSGSQLTVVSDETSDV--------EYTSAAFHPDGLIFGTGTPD--G 369 (506)
T ss_pred cceeeeeccCCcEEEEecCCc-----eEEEEEccCCcEEEEEeeccccc--------eeEEeeEcCCceEEeccCCC--c
Confidence 366778999999999887765 555553 22 233333211111 23688999999544433333 3
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc-eEeccCCCCCCccceEEEeeCCCCCc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
....|+.........++.+..-+....|++++=-..+...+..+++||+..-+ .+.+. .+....+..+.|.+.|+.
T Consensus 370 ~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~-l~~~~~v~s~~fD~SGt~-- 446 (506)
T KOG0289|consen 370 VVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ-LDEKKEVNSLSFDQSGTY-- 446 (506)
T ss_pred eEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee-ccccccceeEEEcCCCCe--
Confidence 33456654455556666666656566677663222233345569999986543 22221 233346778999999998
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC---eeecCCCCCccCcceecCCCCEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~Lt~~~~~~~~p~~SpDG~~la 387 (789)
|+..+. .-.||.++- .+.. ...+..+.+-....+|-.+-++|+
T Consensus 447 --L~~~g~---------------~l~Vy~~~k-----------------~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~ 492 (506)
T KOG0289|consen 447 --LGIAGS---------------DLQVYICKK-----------------KTKSWTEIKELADHSGLSTGVRFGEHAQYLA 492 (506)
T ss_pred --EEeecc---------------eeEEEEEec-----------------ccccceeeehhhhcccccceeeecccceEEe
Confidence 776652 225666653 2332 334444555567778887777777
Q ss_pred EEecC
Q 003886 388 FLSAK 392 (789)
Q Consensus 388 ~~s~~ 392 (789)
-.+++
T Consensus 493 s~smd 497 (506)
T KOG0289|consen 493 STSMD 497 (506)
T ss_pred eccch
Confidence 66654
|
|
| >PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics [] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0076 Score=60.76 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=64.1
Q ss_pred EEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHH-HHHHHHHcCCCCCcc
Q 003886 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT-AIDHVIDMGLANPSK 672 (789)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~-~i~~l~~~~~~d~~r 672 (789)
.|+++|++.+ ....|....+.|...++.|+.++++|.. .+. ....+++++++ .++.+.+. ....+
T Consensus 2 ~lf~~p~~gG--~~~~y~~la~~l~~~~~~v~~i~~~~~~-~~~---------~~~~si~~la~~y~~~I~~~--~~~gp 67 (229)
T PF00975_consen 2 PLFCFPPAGG--SASSYRPLARALPDDVIGVYGIEYPGRG-DDE---------PPPDSIEELASRYAEAIRAR--QPEGP 67 (229)
T ss_dssp EEEEESSTTC--SGGGGHHHHHHHTTTEEEEEEECSTTSC-TTS---------HEESSHHHHHHHHHHHHHHH--TSSSS
T ss_pred eEEEEcCCcc--CHHHHHHHHHhCCCCeEEEEEEecCCCC-CCC---------CCCCCHHHHHHHHHHHhhhh--CCCCC
Confidence 5788898776 3667877888887657899999998732 111 11233555544 34444443 23348
Q ss_pred EEEEEcCccHHHHHHHHHhC---CCceeEEEEeCC
Q 003886 673 VTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNP 704 (789)
Q Consensus 673 v~l~G~S~GG~~a~~~~~~~---p~~~~a~v~~~p 704 (789)
+.|+|||+||.+|..+|.+- -..+..+++..+
T Consensus 68 ~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~ 102 (229)
T PF00975_consen 68 YVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDS 102 (229)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESC
T ss_pred eeehccCccHHHHHHHHHHHHHhhhccCceEEecC
Confidence 99999999999999988652 234777777763
|
Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A .... |
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.042 Score=52.95 Aligned_cols=234 Identities=14% Similarity=0.092 Sum_probs=120.5
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
..+.+.-||++.+....+++.+ .|+...+...+....+..-+.+..-+-|-....+..++..+++||+++|++.+-
T Consensus 21 ~avryN~dGnY~ltcGsdrtvr--LWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr-- 96 (307)
T KOG0316|consen 21 RAVRYNVDGNYCLTCGSDRTVR--LWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRR-- 96 (307)
T ss_pred EEEEEccCCCEEEEcCCCceEE--eecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeee--
Confidence 7788999999877766665443 455332222222222211111111122222233445678999999999987544
Q ss_pred CCC-CCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeec-C
Q 003886 291 IPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-T 368 (789)
Q Consensus 291 ~~~-~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-t 368 (789)
..+ ...+..+.|..++. +++.+. .++.+..+|..+ ..-++.++ .
T Consensus 97 ~rgH~aqVNtV~fNeesS-----Vv~Sgs--------------fD~s~r~wDCRS---------------~s~ePiQild 142 (307)
T KOG0316|consen 97 FRGHLAQVNTVRFNEESS-----VVASGS--------------FDSSVRLWDCRS---------------RSFEPIQILD 142 (307)
T ss_pred cccccceeeEEEecCcce-----EEEecc--------------ccceeEEEEccc---------------CCCCccchhh
Confidence 233 33677888877765 666552 234566677632 23333333 2
Q ss_pred CCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCC
Q 003886 369 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 448 (789)
Q Consensus 369 ~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~ 448 (789)
+....+.+...+ +..|+--+.+ ..+..+|+..|.... + .....+..
T Consensus 143 ea~D~V~Si~v~--~heIvaGS~D-----------GtvRtydiR~G~l~s------D---------------y~g~pit~ 188 (307)
T KOG0316|consen 143 EAKDGVSSIDVA--EHEIVAGSVD-----------GTVRTYDIRKGTLSS------D---------------YFGHPITS 188 (307)
T ss_pred hhcCceeEEEec--ccEEEeeccC-----------CcEEEEEeecceeeh------h---------------hcCCccee
Confidence 223334444443 3344444433 247777876554320 0 01123557
Q ss_pred CccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCcee-EEee-ecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 449 NPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSW-SLLT-LDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 449 ~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~-~~~s-~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
..|++||.-.+.. .-++ .|-.+|-.||++-....++-.... ...+ ......++..+... .+|+.|+..
T Consensus 189 vs~s~d~nc~La~-~l~s--tlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG---~Vy~wdLvd 258 (307)
T KOG0316|consen 189 VSFSKDGNCSLAS-SLDS--TLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDG---KVYFWDLVD 258 (307)
T ss_pred EEecCCCCEEEEe-eccc--eeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCc---eEEEEEecc
Confidence 7899999965543 3333 455578888987665544431111 1111 12334444444332 366666654
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.18 Score=57.47 Aligned_cols=67 Identities=18% Similarity=0.283 Sum_probs=46.1
Q ss_pred ccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEe-cCCCccccccCCCcccceeecC
Q 003886 141 SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFH-VPQTVHGSVYADGWFEGISWNS 217 (789)
Q Consensus 141 ~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~-~~~~~~g~v~~d~~~~~~~wSp 217 (789)
.+.+-|+. ..+...+||+||.+|+-. |...++++|. +++ ++.+. +...+ ..+.|||
T Consensus 244 ~t~lHWH~-----~~V~~L~fS~~G~~LlSG-----G~E~VLv~Wq~~T~~-kqfLPRLgs~I----------~~i~vS~ 302 (792)
T KOG1963|consen 244 CTLLHWHH-----DEVNSLSFSSDGAYLLSG-----GREGVLVLWQLETGK-KQFLPRLGSPI----------LHIVVSP 302 (792)
T ss_pred ceEEEecc-----cccceeEEecCCceEeec-----ccceEEEEEeecCCC-cccccccCCee----------EEEEEcC
Confidence 45566764 458889999999999853 4556899993 333 44332 22222 7899999
Q ss_pred CCCEEEEEeec
Q 003886 218 DETLIAYVAEE 228 (789)
Q Consensus 218 Dg~~la~~~~~ 228 (789)
|+...+.+.++
T Consensus 303 ds~~~sl~~~D 313 (792)
T KOG1963|consen 303 DSDLYSLVLED 313 (792)
T ss_pred CCCeEEEEecC
Confidence 99988777654
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.026 Score=58.99 Aligned_cols=77 Identities=17% Similarity=0.086 Sum_probs=43.1
Q ss_pred CcceecCCCCEEEEEecC---CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCcc
Q 003886 375 FFPRFSPDGKFLVFLSAK---SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 451 (789)
Q Consensus 375 ~~p~~SpDG~~la~~s~~---~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~w 451 (789)
......|||. ++|..+. ... ........||++|..++..+.+.... . ....++|
T Consensus 114 ND~~v~pdG~-~wfgt~~~~~~~~--~~~~~~G~lyr~~p~g~~~~l~~~~~-------------~-------~~NGla~ 170 (307)
T COG3386 114 NDGVVDPDGR-IWFGDMGYFDLGK--SEERPTGSLYRVDPDGGVVRLLDDDL-------------T-------IPNGLAF 170 (307)
T ss_pred CceeEcCCCC-EEEeCCCccccCc--cccCCcceEEEEcCCCCEEEeecCcE-------------E-------ecCceEE
Confidence 3457789987 5666655 111 11112337999986443332221111 0 1247899
Q ss_pred ccCCCEEEEEEEeCCeEEEEEEECC
Q 003886 452 LSDGCTMLLSSIWGSSQVIISVNVS 476 (789)
Q Consensus 452 s~Dg~~l~~~~~~~~~~~l~~~dl~ 476 (789)
||||+.+|++-+.. ..|++++.+
T Consensus 171 SpDg~tly~aDT~~--~~i~r~~~d 193 (307)
T COG3386 171 SPDGKTLYVADTPA--NRIHRYDLD 193 (307)
T ss_pred CCCCCEEEEEeCCC--CeEEEEecC
Confidence 99999998875443 456666553
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.022 Score=57.33 Aligned_cols=215 Identities=14% Similarity=0.110 Sum_probs=103.4
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
.+..-+|++|+..+|...+.. ...+|.. .+.+.-+..+..... |....++.|+|.+.+|+-.+.++..-.+
T Consensus 12 pitchAwn~drt~iAv~~~~~--evhiy~~-~~~~~w~~~htls~H------d~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNH--EVHIYSM-LGADLWEPAHTLSEH------DKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred ceeeeeecCCCceEEeccCCc--eEEEEEe-cCCCCceeceehhhh------CcceeEEeecCCCCceeEccCCCCcccc
Confidence 467789999999999877653 1122222 233323333332222 1123789999999999988877654322
Q ss_pred CccCCCCCCCCCCcCC---CCCC---CcceeeCCcccccCCccCceEEEEEccCCce---EeccCCCCCCccceEEEeeC
Q 003886 235 TFSLGSTKGGSSDKDC---NSWK---GQGDWEEDWGETYAGKRQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAPL 305 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~---~~~~---~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~---~~l~~~~~~~~~~~~~wSPD 305 (789)
.. . .+..++.. .... .-..|+|....-.++.+...|-|+-.+...- ....+.+-...+....|.|+
T Consensus 83 ~~--~---~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 83 TQ--P---SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred cc--C---CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence 21 1 11111100 0000 0123555433333333334444444433221 11111333446678899998
Q ss_pred CCCCccEEEEEeecCCceeeeeeeeccCCcc---eEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCC
Q 003886 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCA---LYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPD 382 (789)
Q Consensus 306 g~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~---l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpD 382 (789)
+-. |+..+-+ ..+. .|+-+++ ++....+-.++..-+..........+.+....|||+
T Consensus 158 nVL----laaGs~D-------------~k~rVfSayIK~Vd---ekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s 217 (361)
T KOG1523|consen 158 NVL----LAAGSTD-------------GKCRVFSAYIKGVD---EKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS 217 (361)
T ss_pred cce----ecccccC-------------cceeEEEEeeeccc---cCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence 764 4443311 1122 3333331 111000000000001111222234566888999999
Q ss_pred CCEEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 383 G~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
|..|+|.+.++ .+.+.|-.+.
T Consensus 218 G~~lawv~Hds-----------~v~~~da~~p 238 (361)
T KOG1523|consen 218 GNRLAWVGHDS-----------TVSFVDAAGP 238 (361)
T ss_pred CCEeeEecCCC-----------ceEEeecCCC
Confidence 99999999775 3666665543
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.12 Score=63.97 Aligned_cols=85 Identities=12% Similarity=0.115 Sum_probs=43.8
Q ss_pred CcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCccccee-eEEeeeeccCCCCCccccccCCCCCcccc
Q 003886 375 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV-DVIPVVQCAEGDCFPGLYSSSILSNPWLS 453 (789)
Q Consensus 375 ~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~-~v~~~~~~~~~~~f~g~~~~~~~~~~ws~ 453 (789)
...++++||+ | |++... ..+|.++|..++....+..... ...+ .......| .....+++++
T Consensus 807 ~Gvavd~dG~-L-YVADs~---------N~rIrviD~~tg~v~tiaG~G~~G~~d--G~~~~a~l-----~~P~GIavd~ 868 (1057)
T PLN02919 807 LGVLCAKDGQ-I-YVADSY---------NHKIKKLDPATKRVTTLAGTGKAGFKD--GKALKAQL-----SEPAGLALGE 868 (1057)
T ss_pred ceeeEeCCCc-E-EEEECC---------CCEEEEEECCCCeEEEEeccCCcCCCC--Cccccccc-----CCceEEEEeC
Confidence 4667899997 3 455432 3579999987654321110000 0000 00000111 1234667889
Q ss_pred CCCEEEEEEEeCCeEEEEEEECCCCcE
Q 003886 454 DGCTMLLSSIWGSSQVIISVNVSSGEL 480 (789)
Q Consensus 454 Dg~~l~~~~~~~~~~~l~~~dl~tg~~ 480 (789)
||+ ||++. .+...|..+|+.+++.
T Consensus 869 dG~-lyVaD--t~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 869 NGR-LFVAD--TNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCC-EEEEE--CCCCEEEEEECCCCcc
Confidence 996 66653 3334567778878765
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.047 Score=60.23 Aligned_cols=164 Identities=16% Similarity=0.157 Sum_probs=101.3
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
..+..-+.||||+.|++..-.. ..+|.+...+ ..+++.+.....- --.-..+.|+-|+.++++++.+
T Consensus 383 ~nIs~~aiSPdg~~Ia~st~~~---~~iy~L~~~~-~vk~~~v~~~~~~----~~~a~~i~ftid~~k~~~~s~~----- 449 (691)
T KOG2048|consen 383 ENISCAAISPDGNLIAISTVSR---TKIYRLQPDP-NVKVINVDDVPLA----LLDASAISFTIDKNKLFLVSKN----- 449 (691)
T ss_pred cceeeeccCCCCCEEEEeeccc---eEEEEeccCc-ceeEEEeccchhh----hccceeeEEEecCceEEEEecc-----
Confidence 4577788999999999965322 2366666333 3444433211100 0001578899999999998732
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCC---CCCccceEEEeeCCCCCc
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP---KSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~---~~~~~~~~~wSPDg~~~~ 310 (789)
..+|..+++++...+.+.+.. .--.+..++-||||++
T Consensus 450 --------------------------------------~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~y-- 489 (691)
T KOG2048|consen 450 --------------------------------------IFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNY-- 489 (691)
T ss_pred --------------------------------------cceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCE--
Confidence 245666676665544442111 1235678899999999
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecC-CCCCccCcceecC-CCCEEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSP-DGKFLVF 388 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~Sp-DG~~la~ 388 (789)
|+..+ ....|+++++ ++.+.+.|. .-....+...++| +-+.|+.
T Consensus 490 --iaa~~---------------t~g~I~v~nl-----------------~~~~~~~l~~rln~~vTa~~~~~~~~~~lvv 535 (691)
T KOG2048|consen 490 --IAAIS---------------TRGQIFVYNL-----------------ETLESHLLKVRLNIDVTAAAFSPFVRNRLVV 535 (691)
T ss_pred --EEEEe---------------ccceEEEEEc-----------------ccceeecchhccCcceeeeeccccccCcEEE
Confidence 88876 2347999998 677666655 2245577778885 4455655
Q ss_pred EecCCCCCCCCccccceeEEeecCCCC
Q 003886 389 LSAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 389 ~s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
... .++++-+|++..+
T Consensus 536 ats-----------~nQv~efdi~~~~ 551 (691)
T KOG2048|consen 536 ATS-----------NNQVFEFDIEARN 551 (691)
T ss_pred Eec-----------CCeEEEEecchhh
Confidence 543 3479999985533
|
|
| >KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0058 Score=62.84 Aligned_cols=121 Identities=18% Similarity=0.322 Sum_probs=83.9
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHC---C------cEEEEEcCCCCCCCCchhhcc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV---G------YSLLIVNYRGSLGFGEEALQS 642 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~---G------y~V~~~d~rGs~G~G~~~~~~ 642 (789)
.|..+|-+.+.|+..+..++--.++++||.|++ ..+|...+..|..- | |.||+|-.+| ||=+..
T Consensus 132 eGL~iHFlhvk~p~~k~~k~v~PlLl~HGwPGs--v~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPG---ygwSd~-- 204 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKKKKKKVKPLLLLHGWPGS--VREFYKFIPLLTDPKRHGNESDYAFEVIAPSLPG---YGWSDA-- 204 (469)
T ss_pred cceeEEEEEecCCccccCCcccceEEecCCCch--HHHHHhhhhhhcCccccCCccceeEEEeccCCCC---cccCcC--
Confidence 688899888887654444443345678999986 45565666666543 3 7899999876 654332
Q ss_pred CCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeC
Q 003886 643 LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 703 (789)
Q Consensus 643 ~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~ 703 (789)
+.+.|.. ...++.+++-|.=+ +.-++..|-|.-+|..++..++..+|+.+.+.-+..
T Consensus 205 -~sk~GFn-~~a~ArvmrkLMlR--Lg~nkffiqGgDwGSiI~snlasLyPenV~GlHlnm 261 (469)
T KOG2565|consen 205 -PSKTGFN-AAATARVMRKLMLR--LGYNKFFIQGGDWGSIIGSNLASLYPENVLGLHLNM 261 (469)
T ss_pred -CccCCcc-HHHHHHHHHHHHHH--hCcceeEeecCchHHHHHHHHHhhcchhhhHhhhcc
Confidence 2233332 45566666666554 456789999999999999999999999888754443
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.031 Score=55.82 Aligned_cols=205 Identities=14% Similarity=0.162 Sum_probs=115.5
Q ss_pred CCCceEEEEEeechhhcccceeEEEEEEeecCCCC-cc-ceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003886 106 GNGTQAMFSISQPNLLANKRKKFMLSTVISKENEN-SV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (789)
Q Consensus 106 pdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (789)
.+-..+.|.....-|.++.+...+.+.+..+...+ +. -++. ...+...+|.|.|.+|+...+.. +..
T Consensus 173 devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd------~~~vrsiSfHPsGefllvgTdHp-----~~r 241 (430)
T KOG0640|consen 173 DEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD------TEPVRSISFHPSGEFLLVGTDHP-----TLR 241 (430)
T ss_pred CcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhc------cceeeeEeecCCCceEEEecCCC-----cee
Confidence 34456667666555666677778888877443221 11 1221 13478899999999999865543 334
Q ss_pred EecCCceeEEEe-cCC-CccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeC
Q 003886 184 LWSQSQLEKEFH-VPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 261 (789)
Q Consensus 184 i~~~~~~~~~~~-~~~-~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (789)
+++-...+-... .+. .+.+.| ..+..|+.|+.-+..+
T Consensus 242 lYdv~T~QcfvsanPd~qht~ai------~~V~Ys~t~~lYvTaS----------------------------------- 280 (430)
T KOG0640|consen 242 LYDVNTYQCFVSANPDDQHTGAI------TQVRYSSTGSLYVTAS----------------------------------- 280 (430)
T ss_pred EEeccceeEeeecCcccccccce------eEEEecCCccEEEEec-----------------------------------
Confidence 442222222221 122 333444 7889999997433322
Q ss_pred CcccccCCccCceEEEEEccCCce-EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEE
Q 003886 262 DWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (789)
Q Consensus 262 d~g~~~~~~~~~~l~v~d~~~g~~-~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (789)
.+..|.+||--+++. +.+....+...+-+..|+-+||. |+..+.+ +-++++
T Consensus 281 ---------kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky----iLsSG~D---------------S~vkLW 332 (430)
T KOG0640|consen 281 ---------KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY----ILSSGKD---------------STVKLW 332 (430)
T ss_pred ---------cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE----EeecCCc---------------ceeeee
Confidence 236788888655543 33322334456778999999998 8776632 245555
Q ss_pred ecccccchhhhhhhhcCCCCCCCee-ecCCC-----CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 341 RVSLYKSEASELELKESSSEDLPVV-NLTES-----ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~~-~Lt~~-----~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
.+ .++... .-|.- ........|...-.+++|.... ...|..||-.++
T Consensus 333 Ei-----------------~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa----------s~slcsWdaRta 385 (430)
T KOG0640|consen 333 EI-----------------STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA----------SNSLCSWDARTA 385 (430)
T ss_pred ee-----------------cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccc----------cCceeeccccch
Confidence 55 233222 11111 1123455666666666665543 346888887776
Q ss_pred CCC
Q 003886 415 GNF 417 (789)
Q Consensus 415 ~~~ 417 (789)
..+
T Consensus 386 dr~ 388 (430)
T KOG0640|consen 386 DRV 388 (430)
T ss_pred hhh
Confidence 554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.088 Score=57.92 Aligned_cols=92 Identities=14% Similarity=0.179 Sum_probs=55.0
Q ss_pred CCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEE
Q 003886 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFEL 184 (789)
Q Consensus 105 spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i 184 (789)
.|||+.+...- ...+++++. .+|+....|..+. .-+..++||-||+..|..+.+ ....+
T Consensus 21 kPDGsqL~lAA----------g~rlliyD~-ndG~llqtLKgHK-----DtVycVAys~dGkrFASG~aD-----K~VI~ 79 (1081)
T KOG1538|consen 21 KPDGTQLILAA----------GSRLLVYDT-SDGTLLQPLKGHK-----DTVYCVAYAKDGKRFASGSAD-----KSVII 79 (1081)
T ss_pred CCCCceEEEec----------CCEEEEEeC-CCccccccccccc-----ceEEEEEEccCCceeccCCCc-----eeEEE
Confidence 49999887652 235677775 3444344443333 348899999999998753332 35667
Q ss_pred ecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEe
Q 003886 185 WSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 226 (789)
Q Consensus 185 ~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~ 226 (789)
|... .+-++.. .|+.+ +..++|.|-...|+.-+
T Consensus 80 W~~k-lEG~LkY---SH~D~-----IQCMsFNP~~h~LasCs 112 (1081)
T KOG1538|consen 80 WTSK-LEGILKY---SHNDA-----IQCMSFNPITHQLASCS 112 (1081)
T ss_pred eccc-ccceeee---ccCCe-----eeEeecCchHHHhhhcc
Confidence 7432 2222221 12221 27899999998888654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.077 Score=54.95 Aligned_cols=214 Identities=10% Similarity=0.041 Sum_probs=114.1
Q ss_pred cCccccceEEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCc--cce-eecCCcceecccEEEEeCCCCCe
Q 003886 91 NISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS--VTF-QWAPFPVEMTGASAVVPSPSGSK 167 (789)
Q Consensus 91 ~~~~~~~~~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~l-t~~~~~~~~~~~~~~~~SPdG~~ 167 (789)
.++-...+|=...-.-+.+.||+.+... ..+.....++...|.-. .++ ..+. +.+....|+|-...
T Consensus 27 dIrVs~~tWDS~fcavNPkfiAvi~eas------gGgaf~ViPl~k~Gr~d~~~P~v~GHt-----~~vLDi~w~PfnD~ 95 (472)
T KOG0303|consen 27 DIRVSRVTWDSSFCAVNPKFVAVIIEAS------GGGAFLVIPLVKTGRMDASYPLVCGHT-----APVLDIDWCPFNDC 95 (472)
T ss_pred ceeeeeeeccccccccCCceEEEEEecC------CCcceeecccccccccCCCCCCccCcc-----ccccccccCccCCc
Confidence 3333333444444445667888776432 22233444443332111 111 1121 45778899998877
Q ss_pred EEEEecCCCCCCeEEEEecCCceeEEE----ecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCC
Q 003886 168 LLVVRNPENESPIQFELWSQSQLEKEF----HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKG 243 (789)
Q Consensus 168 la~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~ 243 (789)
++- +..++....+|.|..++-.+.++ .+. +..-. ..-+.|.|--.-++.++.
T Consensus 96 vIA-SgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rr------Vg~V~wHPtA~NVLlsag---------------- 151 (472)
T KOG0303|consen 96 VIA-SGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRR------VGLVQWHPTAPNVLLSAG---------------- 151 (472)
T ss_pred eee-cCCCCceEEEEECCCcccccCcccceEEEe-eccee------EEEEeecccchhhHhhcc----------------
Confidence 543 22222333455555544333222 121 11111 267888886655554322
Q ss_pred CCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCce
Q 003886 244 GSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETR 323 (789)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~ 323 (789)
.++.+.+||+.+|+...- +.....+.++.|+-||.. |+-++
T Consensus 152 ---------------------------~Dn~v~iWnv~tgeali~--l~hpd~i~S~sfn~dGs~----l~Ttc------ 192 (472)
T KOG0303|consen 152 ---------------------------SDNTVSIWNVGTGEALIT--LDHPDMVYSMSFNRDGSL----LCTTC------ 192 (472)
T ss_pred ---------------------------CCceEEEEeccCCceeee--cCCCCeEEEEEeccCCce----eeeec------
Confidence 458899999999975433 234556789999999998 77665
Q ss_pred eeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeec-CCCCC-ccCcceecCCCCEEEEEecCCCCCCCCcc
Q 003886 324 KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESIS-SAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401 (789)
Q Consensus 324 ~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-t~~~~-~~~~p~~SpDG~~la~~s~~~~~~~g~~~ 401 (789)
++..|.++|. .++++..- -.+.+ -.....|-.+|+ |+...-.. .
T Consensus 193 ---------kDKkvRv~dp-----------------r~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr-------~ 238 (472)
T KOG0303|consen 193 ---------KDKKVRVIDP-----------------RRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSR-------M 238 (472)
T ss_pred ---------ccceeEEEcC-----------------CCCcEeeecccccCCCcceeEEeccCc-eeeecccc-------c
Confidence 3347888887 34443222 22333 355667888888 43322111 1
Q ss_pred ccceeEEeecC
Q 003886 402 ATDSLHRIDWP 412 (789)
Q Consensus 402 ~~~~L~~~d~~ 412 (789)
...++-+||..
T Consensus 239 seRq~aLwdp~ 249 (472)
T KOG0303|consen 239 SERQIALWDPN 249 (472)
T ss_pred cccceeccCcc
Confidence 23467777643
|
|
| >TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0069 Score=70.01 Aligned_cols=104 Identities=18% Similarity=0.187 Sum_probs=65.8
Q ss_pred ceEEEecccccchhhhhhhhcCCCCCCCeeec-CCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 336 ALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 336 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-t~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
.|.++|. ++...+.+ +.....+.+|+|||||++|+|...-+.+ .+...||+.|+.+.
T Consensus 330 ~L~~~D~-----------------dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~-----~g~s~vYv~~L~t~ 387 (912)
T TIGR02171 330 NLAYIDY-----------------TKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGL-----PGKSSVYVRNLNAS 387 (912)
T ss_pred eEEEEec-----------------CCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCC-----CCCceEEEEehhcc
Confidence 7999998 66677777 6777789999999999999994433211 13457999999886
Q ss_pred CCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCC---------eEEEEEEECCCCc
Q 003886 415 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS---------SQVIISVNVSSGE 479 (789)
Q Consensus 415 ~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~---------~~~l~~~dl~tg~ 479 (789)
+...+...+.. ..+++....++|.++++..+..+ ...-|.|....|+
T Consensus 388 ~~~~vkl~ve~------------------aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gk 443 (912)
T TIGR02171 388 GSGLVKLPVEN------------------AAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGK 443 (912)
T ss_pred CCCceEeeccc------------------ccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCC
Confidence 65433222110 12344555677776665544322 1245666665543
|
This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown. |
| >KOG3967 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.017 Score=54.62 Aligned_cols=136 Identities=24% Similarity=0.309 Sum_probs=78.5
Q ss_pred hhhccccC-ceeeEeeecccccceeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhH------------
Q 003886 545 VKSLLSSR-QFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS------------ 611 (789)
Q Consensus 545 ~~~~l~~~-~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~------------ 611 (789)
+.++|+.. .+....||+... ...+.. +++..+++ ...+..++|+|||.+--. ..+|.
T Consensus 62 VYeLLEk~c~Lkr~~ip~d~~-------e~E~~S-FiF~s~~~-lt~~~kLlVLIHGSGvVr-AGQWARrLIIN~~Ld~G 131 (297)
T KOG3967|consen 62 VYELLEKDCNLKRVSIPVDAT-------ESEPKS-FIFMSEDA-LTNPQKLLVLIHGSGVVR-AGQWARRLIINEDLDSG 131 (297)
T ss_pred HHHHHHhcCCceeEeecCCCC-------CCCCcc-eEEEChhH-hcCccceEEEEecCceEe-cchHhhhhhhccccccC
Confidence 44455433 366667765331 111222 34443322 234556899999965421 12232
Q ss_pred ---HHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHH
Q 003886 612 ---KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHL 688 (789)
Q Consensus 612 ---~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~ 688 (789)
+.+....+.||.|++.|.--...+-+...+ +..+-...++...-+..+++.. ..++.|.++.||+||++++.+
T Consensus 132 TQiPyi~rAv~~Gygviv~N~N~~~kfye~k~n--p~kyirt~veh~~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l 207 (297)
T KOG3967|consen 132 TQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRN--PQKYIRTPVEHAKYVWKNIVLP--AKAESVFVVAHSYGGSLTLDL 207 (297)
T ss_pred CcChHHHHHHHcCCcEEEeCCchhhhhhhcccC--cchhccchHHHHHHHHHHHhcc--cCcceEEEEEeccCChhHHHH
Confidence 234556789999999996421112222211 1223334456666666666554 457889999999999999999
Q ss_pred HHhCCC
Q 003886 689 IGQAPD 694 (789)
Q Consensus 689 ~~~~p~ 694 (789)
+-++|+
T Consensus 208 ~~~f~~ 213 (297)
T KOG3967|consen 208 VERFPD 213 (297)
T ss_pred HHhcCC
Confidence 999875
|
|
| >PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.012 Score=65.48 Aligned_cols=134 Identities=19% Similarity=0.160 Sum_probs=79.3
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH-----------------HHHHHHHCCcEEEEEcCCCCC
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-----------------SLAFLSSVGYSLLIVNYRGSL 633 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-----------------~~~~la~~Gy~V~~~d~rGs~ 633 (789)
..+..+..|++..++ ..+..|+||++.|||++........ +..-+.+ -..||.+|.+-.+
T Consensus 21 ~~~~~lfyw~~~s~~--~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~-~an~l~iD~PvGt 97 (415)
T PF00450_consen 21 NENAHLFYWFFESRN--DPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNK-FANLLFIDQPVGT 97 (415)
T ss_dssp TTTEEEEEEEEE-SS--GGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGG-TSEEEEE--STTS
T ss_pred CCCcEEEEEEEEeCC--CCCCccEEEEecCCceeccccccccccCceEEeeccccccccccccccc-ccceEEEeecCce
Confidence 356778888887664 4567899999999999643221100 0011222 2689999966447
Q ss_pred CCCchhhccCCCCCC-cccHHHHHHHHHHHHHc-CCCCCccEEEEEcCccHHHHHHHHHh----C------CCceeEEEE
Q 003886 634 GFGEEALQSLPGKVG-SQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAAAA 701 (789)
Q Consensus 634 G~G~~~~~~~~~~~~-~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~~~~----~------p~~~~a~v~ 701 (789)
||+....... ..+. ....+|+..++..+.++ +.....++.|+|-||||..+..+|.. . +-.++++++
T Consensus 98 GfS~~~~~~~-~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkGi~I 176 (415)
T PF00450_consen 98 GFSYGNDPSD-YVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKGIAI 176 (415)
T ss_dssp TT-EESSGGG-GS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEEEEE
T ss_pred EEeecccccc-ccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhcccccccccccccccee
Confidence 7765543221 1111 22356666666655553 55666789999999999987666542 2 235899999
Q ss_pred eCCccch
Q 003886 702 RNPLCNL 708 (789)
Q Consensus 702 ~~pv~~~ 708 (789)
.+|+++.
T Consensus 177 Gng~~dp 183 (415)
T PF00450_consen 177 GNGWIDP 183 (415)
T ss_dssp ESE-SBH
T ss_pred cCccccc
Confidence 9998876
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A .... |
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.011 Score=65.90 Aligned_cols=143 Identities=12% Similarity=0.050 Sum_probs=94.5
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
++..|..||+...+-.... .....++.++.|+|--.. .++...+. +.|-.+|++.
T Consensus 154 QDg~vK~~DlR~~~S~~t~-~~nSESiRDV~fsp~~~~----~F~s~~ds--------------G~lqlWDlRq------ 208 (839)
T KOG0269|consen 154 QDGTVKCWDLRSKKSKSTF-RSNSESIRDVKFSPGYGN----KFASIHDS--------------GYLQLWDLRQ------ 208 (839)
T ss_pred CCceEEEEeeecccccccc-cccchhhhceeeccCCCc----eEEEecCC--------------ceEEEeeccC------
Confidence 4567888998777655552 123347889999996554 44444322 2466677641
Q ss_pred hhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeee
Q 003886 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~ 430 (789)
-..-..+++.+.+.+.-..|+|++.+||..+.+ ..+.+||+.++....+.. ...+.
T Consensus 209 ---------p~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD-----------K~vkiWd~t~~~~~~~~t-InTia--- 264 (839)
T KOG0269|consen 209 ---------PDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD-----------KMVKIWDMTDSRAKPKHT-INTIA--- 264 (839)
T ss_pred ---------chhHHHHhhcccCceEEEeecCCCceeeecCCC-----------ccEEEEeccCCCccceeE-Eeecc---
Confidence 223356889999999999999999999876633 258899987755533211 11111
Q ss_pred eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECC
Q 003886 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 476 (789)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~ 476 (789)
.+..+.|-|+-.+.+.+....+...++++|+.
T Consensus 265 --------------pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr 296 (839)
T KOG0269|consen 265 --------------PVGRVKWRPARSYHLATCSMVVDTSVHVWDVR 296 (839)
T ss_pred --------------eeeeeeeccCccchhhhhhccccceEEEEeec
Confidence 24577899998877777666677778888874
|
|
| >COG4947 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0024 Score=58.11 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhc
Q 003886 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 713 (789)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~ 713 (789)
+-..+--+|++++. =+.+..+.|.|+||+.++.+..++|++|..+|+.+++++...+++
T Consensus 85 ~rH~AyerYv~eEa--lpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg 143 (227)
T COG4947 85 ERHRAYERYVIEEA--LPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFG 143 (227)
T ss_pred HHHHHHHHHHHHhh--cCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhcc
Confidence 33445566777763 235678899999999999999999999999999999999876543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.2 Score=51.79 Aligned_cols=100 Identities=11% Similarity=0.126 Sum_probs=65.0
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
.+..|.+||+++|....- .........+..+|..+. |+..+ ...+|.++|....
T Consensus 279 wDHTIk~WDletg~~~~~--~~~~ksl~~i~~~~~~~L----l~~gs---------------sdr~irl~DPR~~----- 332 (423)
T KOG0313|consen 279 WDHTIKVWDLETGGLKST--LTTNKSLNCISYSPLSKL----LASGS---------------SDRHIRLWDPRTG----- 332 (423)
T ss_pred ccceEEEEEeecccceee--eecCcceeEeecccccce----eeecC---------------CCCceeecCCCCC-----
Confidence 347899999998865433 234456678889998876 55544 1236788886321
Q ss_pred hhhhhcCCCCCC-CeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCC
Q 003886 351 ELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 351 ~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
.+. ...+|..+...+....|||-..+++....- .+.+.+||+.+..
T Consensus 333 ---------~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~----------D~t~klWDvRS~k 379 (423)
T KOG0313|consen 333 ---------DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSY----------DNTVKLWDVRSTK 379 (423)
T ss_pred ---------CCceeEEeeecchhhhhheecCCCCceEEEEEec----------CCeEEEEEeccCC
Confidence 122 235678888889999999987765433322 2357888886633
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.24 Score=52.42 Aligned_cols=203 Identities=13% Similarity=0.113 Sum_probs=99.9
Q ss_pred cccEEEEeCCCCC-eEEEEecCCCCCCeEEEEec---CCceeEEEecCCCccccccCCCcccceeecCCCC-EEEEEeec
Q 003886 154 TGASAVVPSPSGS-KLLVVRNPENESPIQFELWS---QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAEE 228 (789)
Q Consensus 154 ~~~~~~~~SPdG~-~la~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~-~la~~~~~ 228 (789)
+.+...+|.|.-. .|+-+.+. .|...+|.+.. +.....+.. ...+.| .++.|||-.. +|+..+.+
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK-~G~VG~Wn~~~~~~d~d~v~~f~---~hs~~V------s~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDK-GGQVGLWNFGTQEKDKDGVYLFT---PHSGPV------SGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred cceEEEEecccCcceEEEEccC-CCcEEEEecCCCCCccCceEEec---cCCccc------cceEecCCChhheeeeccC
Confidence 4588899999987 55444333 35445555531 111111111 111223 8899999654 44445555
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc--eEeccCCCCCCccceEEEeeCC
Q 003886 229 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPKSLSVGQVVWAPLN 306 (789)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~--~~~l~~~~~~~~~~~~~wSPDg 306 (789)
...+-..+......+.....+...|.....+..+-+..+.+..-..+-+||+.++. ...+ .-..-.+..+++.|--
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~--~lh~kKI~sv~~NP~~ 334 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL--RLHKKKITSVALNPVC 334 (498)
T ss_pred ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh--hhhhcccceeecCCCC
Confidence 54433222211111111111122222222222222222222222345566765543 3333 1222367899999988
Q ss_pred CCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC--eeecCCCCCccCcceecCCCC
Q 003886 307 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP--VVNLTESISSAFFPRFSPDGK 384 (789)
Q Consensus 307 ~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~Lt~~~~~~~~p~~SpDG~ 384 (789)
.+ ++.++. .+..+.++|+... .... ..-...+...+.+..|||+|-
T Consensus 335 p~----~laT~s--------------~D~T~kIWD~R~l--------------~~K~sp~lst~~HrrsV~sAyFSPs~g 382 (498)
T KOG4328|consen 335 PW----FLATAS--------------LDQTAKIWDLRQL--------------RGKASPFLSTLPHRRSVNSAYFSPSGG 382 (498)
T ss_pred ch----heeecc--------------cCcceeeeehhhh--------------cCCCCcceecccccceeeeeEEcCCCC
Confidence 77 444441 1123445565321 1111 233345666788999999998
Q ss_pred EEEEEecCCCCCCCCccccceeEEeec
Q 003886 385 FLVFLSAKSSVDSGAHSATDSLHRIDW 411 (789)
Q Consensus 385 ~la~~s~~~~~~~g~~~~~~~L~~~d~ 411 (789)
.|+..+.+. .|.++|-
T Consensus 383 tl~TT~~D~-----------~IRv~ds 398 (498)
T KOG4328|consen 383 TLLTTCQDN-----------EIRVFDS 398 (498)
T ss_pred ceEeeccCC-----------ceEEeec
Confidence 888777553 5888875
|
|
| >COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.039 Score=54.17 Aligned_cols=112 Identities=21% Similarity=0.166 Sum_probs=64.9
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCC-----cEEEEEcCCCCCCC----CchhhccCC------CCCCccc-HHH
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG-----YSLLIVNYRGSLGF----GEEALQSLP------GKVGSQD-VND 654 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G-----y~V~~~d~rGs~G~----G~~~~~~~~------~~~~~~~-~~D 654 (789)
.+|+| |+||..+. ..++......|...+ --++.+|--|+.-. .......+- +.-...+ ..=
T Consensus 45 ~iPTI-fIhGsgG~--asS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~w 121 (288)
T COG4814 45 AIPTI-FIHGSGGT--ASSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKW 121 (288)
T ss_pred ccceE-EEecCCCC--hhHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHH
Confidence 56665 88997664 445555666666554 35666776554211 111110000 0001111 233
Q ss_pred HHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCC-----ceeEEEEeCCccc
Q 003886 655 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCN 707 (789)
Q Consensus 655 ~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~-----~~~a~v~~~pv~~ 707 (789)
+..++.||.++ .+..++-++|||+||.....++..+.+ .++..|+.++-++
T Consensus 122 lk~~msyL~~~--Y~i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN 177 (288)
T COG4814 122 LKKAMSYLQKH--YNIPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN 177 (288)
T ss_pred HHHHHHHHHHh--cCCceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc
Confidence 55677888887 466789999999999999888876421 3556666665544
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.11 Score=51.78 Aligned_cols=239 Identities=12% Similarity=0.169 Sum_probs=135.1
Q ss_pred CCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecC-CCC-----CC
Q 003886 106 GNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP-ENE-----SP 179 (789)
Q Consensus 106 pdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~-~~~-----~~ 179 (789)
.|...+.|-....++. ...++-+..++..++... ...|.-..+.+...+=||-.+.|+-.... .++ +.
T Consensus 22 ad~d~icFlvgTnslK---~dNqVhll~~d~e~s~l~---skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~a 95 (370)
T KOG1007|consen 22 ADRDHICFLVGTNSLK---EDNQVHLLRLDSEGSELL---SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGA 95 (370)
T ss_pred cCccceEEEEeccccC---CcceeEEEEecCccchhh---hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeE
Confidence 4556677776665543 335566665655544321 11122222668888889988776554332 222 22
Q ss_pred eEEEEe-cCCc-----eeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCC-CCCCc----
Q 003886 180 IQFELW-SQSQ-----LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKG-GSSDK---- 248 (789)
Q Consensus 180 ~~~~i~-~~~~-----~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~-~~~~~---- 248 (789)
.+|.|. .-+. .+.+..++...+|.+ ..+.|-|++++|+...+.. ...|.....++ ....+
T Consensus 96 aiw~ipe~~~~S~~~tlE~v~~Ldteavg~i------~cvew~Pns~klasm~dn~---i~l~~l~ess~~vaev~ss~s 166 (370)
T KOG1007|consen 96 AIWQIPEPLGQSNSSTLECVASLDTEAVGKI------NCVEWEPNSDKLASMDDNN---IVLWSLDESSKIVAEVLSSES 166 (370)
T ss_pred EEEecccccCccccchhhHhhcCCHHHhCce------eeEEEcCCCCeeEEeccCc---eEEEEcccCcchheeeccccc
Confidence 455555 2222 233334444455655 8999999999999876322 22333222222 11111
Q ss_pred -CCCCCCCcceeeCC-cccccCCccCceEEEEEccCCceE-eccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceee
Q 003886 249 -DCNSWKGQGDWEED-WGETYAGKRQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 325 (789)
Q Consensus 249 -~~~~~~~~~~~~~d-~g~~~~~~~~~~l~v~d~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~ 325 (789)
....-...+.|+|+ -|.++.......|.-||+.+.+.- .+. -.....+.++.|.|+-+. ++.++.+
T Consensus 167 ~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~-dAHgq~vrdlDfNpnkq~----~lvt~gD------ 235 (370)
T KOG1007|consen 167 AEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIE-DAHGQRVRDLDFNPNKQH----ILVTCGD------ 235 (370)
T ss_pred ccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchh-hhhcceeeeccCCCCceE----EEEEcCC------
Confidence 11122235678883 356666667788999998765322 121 011124667889998776 6665522
Q ss_pred eeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 326 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 326 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
.+.|.++|.+. ....+..|.++...+...+|.|--.+|+..+..+
T Consensus 236 --------dgyvriWD~R~---------------tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 236 --------DGYVRIWDTRK---------------TKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred --------CccEEEEeccC---------------CCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 23566777631 3445677888888899999999888887766443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.098 Score=58.85 Aligned_cols=205 Identities=8% Similarity=-0.013 Sum_probs=96.8
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
....=++|||+.|.-.++ -...+-.|+ ...+....+.+.... ..+.++|||++++..+.......
T Consensus 195 e~~~PlpnDGk~l~~~~e---y~~~vSvID~etmeV~~qV~Vdgnp----------d~v~~spdGk~afvTsyNsE~G~- 260 (635)
T PRK02888 195 EFRIPLPNDGKDLDDPKK---YRSLFTAVDAETMEVAWQVMVDGNL----------DNVDTDYDGKYAFSTCYNSEEGV- 260 (635)
T ss_pred ccccccCCCCCEeecccc---eeEEEEEEECccceEEEEEEeCCCc----------ccceECCCCCEEEEeccCcccCc-
Confidence 444558899997732211 222333444 333333344444444 67899999998877653221110
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccC-----CceEeccCCCCCCccceEEEeeCCCCC
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-----GEVQAVKGIPKSLSVGQVVWAPLNEGL 309 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-----g~~~~l~~~~~~~~~~~~~wSPDg~~~ 309 (789)
........+ ..+.-.-.|+....+.+++...+. ..+.+-++|..+ .++... ++-.-+...+..||||++
T Consensus 261 tl~em~a~e-~d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~y--IPVGKsPHGV~vSPDGky- 334 (635)
T PRK02888 261 TLAEMMAAE-RDWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRY--VPVPKNPHGVNTSPDGKY- 334 (635)
T ss_pred ceeeecccc-CceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEE--EECCCCccceEECCCCCE-
Confidence 000000000 000000111111112222211121 235688999887 344444 455667789999999997
Q ss_pred ccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEE
Q 003886 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 310 ~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~ 389 (789)
++..+. . ...+-++|+....+ +....-+.......++.-+. ....-+|.++|+ +|+
T Consensus 335 ---lyVank-l-------------S~tVSVIDv~k~k~----~~~~~~~~~~~vvaevevGl-GPLHTaFDg~G~--ayt 390 (635)
T PRK02888 335 ---FIANGK-L-------------SPTVTVIDVRKLDD----LFDGKIKPRDAVVAEPELGL-GPLHTAFDGRGN--AYT 390 (635)
T ss_pred ---EEEeCC-C-------------CCcEEEEEChhhhh----hhhccCCccceEEEeeccCC-CcceEEECCCCC--EEE
Confidence 555542 1 12577777621100 00000000111112222222 245668888887 555
Q ss_pred ecCCCCCCCCccccceeEEeecCC
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
+-- -.+++..||+..
T Consensus 391 slf---------~dsqv~kwn~~~ 405 (635)
T PRK02888 391 TLF---------LDSQIVKWNIEA 405 (635)
T ss_pred eEe---------ecceeEEEehHH
Confidence 532 235799999865
|
|
| >COG3150 Predicted esterase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.025 Score=51.80 Aligned_cols=117 Identities=16% Similarity=0.235 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccch-hhhhcCCCCCcchhhhhccCcc
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-ALMVGTTDIPDWCYVESYGSKG 730 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~-~~~~~~~~~~~~~~~~~~~~~~ 730 (789)
....++-++-++++. .....+|+|-|.|||.+.|++.++ -+++++ .+|..-. ..|.+.-+.+... +..
T Consensus 42 p~~a~~ele~~i~~~--~~~~p~ivGssLGGY~At~l~~~~--Girav~-~NPav~P~e~l~gylg~~en~----ytg-- 110 (191)
T COG3150 42 PQQALKELEKAVQEL--GDESPLIVGSSLGGYYATWLGFLC--GIRAVV-FNPAVRPYELLTGYLGRPENP----YTG-- 110 (191)
T ss_pred HHHHHHHHHHHHHHc--CCCCceEEeecchHHHHHHHHHHh--CChhhh-cCCCcCchhhhhhhcCCCCCC----CCc--
Confidence 344455555555542 223489999999999999999876 356554 4554332 2221111111100 000
Q ss_pred ccccCCCCChhhHHHHHhcCccccCCCCCCC-EEEEEeCC-CCCCChHHHHHHHHHCC
Q 003886 731 KDSFTESPSVEDLTRFHSKSPISHISKVKTP-TIFLLGAQ-DLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P-~Lii~G~~-D~~vp~~~~~~l~~~l~ 786 (789)
+.|.- ......... ...+..++.| .|++.... |.+....++.+.|....
T Consensus 111 -~~y~l--e~~hI~~l~----~~~~~~l~~p~~~~lL~qtgDEvLDyr~a~a~y~~~~ 161 (191)
T COG3150 111 -QEYVL--ESRHIATLC----VLQFRELNRPRCLVLLSQTGDEVLDYRQAVAYYHPCY 161 (191)
T ss_pred -ceEEe--ehhhHHHHH----HhhccccCCCcEEEeecccccHHHHHHHHHHHhhhhh
Confidence 00000 001111111 1234445555 45554444 99999988888887654
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.02 Score=64.50 Aligned_cols=93 Identities=13% Similarity=0.131 Sum_probs=65.7
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
..-.|.++|..+.++.+.. ......+.++.||||||| |+..+. ++.|..+|+
T Consensus 554 ddf~I~vvD~~t~kvvR~f-~gh~nritd~~FS~DgrW----lisasm---------------D~tIr~wDl-------- 605 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREF-WGHGNRITDMTFSPDGRW----LISASM---------------DSTIRTWDL-------- 605 (910)
T ss_pred CceeEEEEEchhhhhhHHh-hccccceeeeEeCCCCcE----EEEeec---------------CCcEEEEec--------
Confidence 3467999999888765541 223346789999999999 888873 457889998
Q ss_pred hhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEee
Q 003886 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 410 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d 410 (789)
.++...-.-.-...+.+.+|||.|.+||....+. ..||+|-
T Consensus 606 ---------pt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~----------~gIylWs 646 (910)
T KOG1539|consen 606 ---------PTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQ----------NGIYLWS 646 (910)
T ss_pred ---------cCcceeeeEecCCcceeeEECCCCCEEEEEEecC----------ceEEEEE
Confidence 3444332222244578999999999999877543 3588874
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.093 Score=53.65 Aligned_cols=200 Identities=14% Similarity=0.140 Sum_probs=118.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
+-+..+++-|-.++++..+.+. .+.|| ..|++... +++.+ +...++.+|+---+++...+++..
T Consensus 152 gWVr~vavdP~n~wf~tgs~Dr-----tikIwDlatg~Lklt--ltGhi-------~~vr~vavS~rHpYlFs~gedk~V 217 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSADR-----TIKIWDLATGQLKLT--LTGHI-------ETVRGVAVSKRHPYLFSAGEDKQV 217 (460)
T ss_pred ceEEEEeeCCCceeEEecCCCc-----eeEEEEcccCeEEEe--ecchh-------heeeeeeecccCceEEEecCCCee
Confidence 4477888999888887654432 66777 34544322 22221 122789999988887777666543
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
+ -|+..+++.....-.+.+-++.....|.-...+++.++..+.|||+.+....... ......+.++.+-|-.-+
T Consensus 218 K--CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l-~GH~~~V~~V~~~~~dpq--- 291 (460)
T KOG0285|consen 218 K--CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL-SGHTNPVASVMCQPTDPQ--- 291 (460)
T ss_pred E--EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe-cCCCCcceeEEeecCCCc---
Confidence 2 2333333222222222221111112222233455667889999999887544331 233456778888886666
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEec
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
|+-.+. +..|..+|+. .+.....||.+...+......|+-.. |.|.
T Consensus 292 -vit~S~---------------D~tvrlWDl~----------------agkt~~tlt~hkksvral~lhP~e~~--fASa 337 (460)
T KOG0285|consen 292 -VITGSH---------------DSTVRLWDLR----------------AGKTMITLTHHKKSVRALCLHPKENL--FASA 337 (460)
T ss_pred -eEEecC---------------CceEEEeeec----------------cCceeEeeecccceeeEEecCCchhh--hhcc
Confidence 666552 3367788873 66678899999888888888887554 4442
Q ss_pred CCCCCCCCccccceeEEeecCCCCCC
Q 003886 392 KSSVDSGAHSATDSLHRIDWPTNGNF 417 (789)
Q Consensus 392 ~~~~~~g~~~~~~~L~~~d~~~~~~~ 417 (789)
.. ..+..|+++.|...
T Consensus 338 s~----------dnik~w~~p~g~f~ 353 (460)
T KOG0285|consen 338 SP----------DNIKQWKLPEGEFL 353 (460)
T ss_pred CC----------ccceeccCCccchh
Confidence 22 34777888776543
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.4 Score=51.23 Aligned_cols=241 Identities=12% Similarity=0.039 Sum_probs=124.4
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCce--eEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQL--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~--~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
++..+.|+-... |...+..++ .++.+| ..|+. .+++....+-. ..-....++| ++-++.....
T Consensus 36 g~~s~~w~~~n~-lvvas~~gd---k~~~~~~K~g~~~~Vp~~~k~~gd~-----~~Cv~~~s~S-----~y~~sgG~~~ 101 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGD---KVMRIKEKDGKTPEVPRVRKLTGDN-----AFCVACASQS-----LYEISGGQSG 101 (673)
T ss_pred cceeeeccccce-EEEeecCCc---eeEEEecccCCCCccceeeccccch-----HHHHhhhhcc-----eeeeccCcCc
Confidence 477888886554 555444432 367777 44442 22222211110 0001233344 3334444334
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCccccc--CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCC
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY--AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL 309 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~--~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~ 309 (789)
-+..|+...+-..+..+++.+-+.-..| +|...| ...-..+|.+..+.++.-..-.+.+....+.-+.|||-.+.
T Consensus 102 ~Vkiwdl~~kl~hr~lkdh~stvt~v~Y--N~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~- 178 (673)
T KOG4378|consen 102 CVKIWDLRAKLIHRFLKDHQSTVTYVDY--NNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRF- 178 (673)
T ss_pred eeeehhhHHHHHhhhccCCcceeEEEEe--cCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccce-
Confidence 4455664434344555565543332222 222222 11224567777777764332211333445667889999888
Q ss_pred ccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEE
Q 003886 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 310 ~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~ 389 (789)
++..+.. ...+-++|+.+ .......+..+...+....|||-...|+..
T Consensus 179 ---lL~~asd--------------~G~VtlwDv~g---------------~sp~~~~~~~HsAP~~gicfspsne~l~vs 226 (673)
T KOG4378|consen 179 ---LLSIASD--------------KGAVTLWDVQG---------------MSPIFHASEAHSAPCRGICFSPSNEALLVS 226 (673)
T ss_pred ---eeEeecc--------------CCeEEEEeccC---------------CCcccchhhhccCCcCcceecCCccceEEE
Confidence 6665522 23566677621 122233455566778899999987766544
Q ss_pred ecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEE
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (789)
..- ...|++||..+.... . .++ |...+..++|+++|.+| ..++ .+..
T Consensus 227 VG~----------Dkki~~yD~~s~~s~---~---~l~--------------y~~Plstvaf~~~G~~L-~aG~--s~G~ 273 (673)
T KOG4378|consen 227 VGY----------DKKINIYDIRSQAST---D---RLT--------------YSHPLSTVAFSECGTYL-CAGN--SKGE 273 (673)
T ss_pred ecc----------cceEEEeeccccccc---c---eee--------------ecCCcceeeecCCceEE-Eeec--CCce
Confidence 322 247999997643221 1 111 22235678899999755 3333 3446
Q ss_pred EEEEECCC
Q 003886 470 IISVNVSS 477 (789)
Q Consensus 470 l~~~dl~t 477 (789)
|+.+|+..
T Consensus 274 ~i~YD~R~ 281 (673)
T KOG4378|consen 274 LIAYDMRS 281 (673)
T ss_pred EEEEeccc
Confidence 77778743
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.55 Score=47.02 Aligned_cols=105 Identities=15% Similarity=0.186 Sum_probs=58.7
Q ss_pred EEEeCCCCC-eEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCC
Q 003886 158 AVVPSPSGS-KLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (789)
Q Consensus 158 ~~~~SPdG~-~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~ 235 (789)
..+++|.-. .++|.+..+ +..++++ .+.+..++.....+-| .|..-.|||||++ +|..+.+..
T Consensus 72 gi~~~p~~~ravafARrPG---tf~~vfD~~~~~~pv~~~s~~~RH-------fyGHGvfs~dG~~-LYATEndfd---- 136 (366)
T COG3490 72 GIAFHPALPRAVAFARRPG---TFAMVFDPNGAQEPVTLVSQEGRH-------FYGHGVFSPDGRL-LYATENDFD---- 136 (366)
T ss_pred CeecCCCCcceEEEEecCC---ceEEEECCCCCcCcEEEecccCce-------eecccccCCCCcE-EEeecCCCC----
Confidence 456777654 566666654 1123333 3333333333333333 1245679999985 566554321
Q ss_pred ccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCC-CCCccceEEEeeCCCCCccEEE
Q 003886 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQYLV 314 (789)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~-~~~~~~~~~wSPDg~~~~~~l~ 314 (789)
..+..|-++|...+ ..++-..+ ..+...++.|.+||+. |+
T Consensus 137 ----------------------------------~~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm~DGrt----lv 177 (366)
T COG3490 137 ----------------------------------PNRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLMADGRT----LV 177 (366)
T ss_pred ----------------------------------CCCceEEEEecccc-cceecccccCCcCcceeEEecCCcE----EE
Confidence 14577888887633 33332122 2346679999999997 66
Q ss_pred EE
Q 003886 315 FV 316 (789)
Q Consensus 315 f~ 316 (789)
..
T Consensus 178 va 179 (366)
T COG3490 178 VA 179 (366)
T ss_pred Ee
Confidence 54
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.019 Score=67.03 Aligned_cols=230 Identities=16% Similarity=0.180 Sum_probs=118.2
Q ss_pred CCCcccceeecCCCCE----EEEEeecCCCCCCCccCCC---CCCC---CCCcCCCCCCCcceeeCCcc-cccCCccCce
Q 003886 206 ADGWFEGISWNSDETL----IAYVAEEPSPSKPTFSLGS---TKGG---SSDKDCNSWKGQGDWEEDWG-ETYAGKRQPS 274 (789)
Q Consensus 206 ~d~~~~~~~wSpDg~~----la~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~d~g-~~~~~~~~~~ 274 (789)
.+..|..+.|++-|.. ||=..++... ..|+... .... .....+..-+...+|.+.-+ ...++..+.+
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I--~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~ge 140 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNI--VLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGE 140 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCce--EEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCc
Confidence 3456789999998887 5544444322 1222111 1111 11122222222356666655 3445667889
Q ss_pred EEEEEccCCceEecc-C-CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 275 LFVININSGEVQAVK-G-IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 275 l~v~d~~~g~~~~l~-~-~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
|++||+..-+. ... + ......+..++|.-.-.+ |+-.+.. .....++|+.
T Consensus 141 I~iWDlnn~~t-P~~~~~~~~~~eI~~lsWNrkvqh----ILAS~s~--------------sg~~~iWDlr--------- 192 (1049)
T KOG0307|consen 141 ILIWDLNKPET-PFTPGSQAPPSEIKCLSWNRKVSH----ILASGSP--------------SGRAVIWDLR--------- 192 (1049)
T ss_pred EEEeccCCcCC-CCCCCCCCCcccceEeccchhhhH----HhhccCC--------------CCCceecccc---------
Confidence 99999976322 120 0 011123445556554444 3333311 1134455662
Q ss_pred hhhcCCCCCCCeeecCCCCC--ccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeee
Q 003886 353 ELKESSSEDLPVVNLTESIS--SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (789)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~~~--~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~ 430 (789)
....+..|+...+ .+....|.||+.+-+.+...+. ....|-+||+.-...- ..+.
T Consensus 193 -------~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd-------~~PviqlWDlR~assP---------~k~~ 249 (1049)
T KOG0307|consen 193 -------KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDD-------SAPVIQLWDLRFASSP---------LKIL 249 (1049)
T ss_pred -------CCCcccccccCCCccceeeeeeCCCCceeeeeecCCC-------CCceeEeecccccCCc---------hhhh
Confidence 3345556655533 4678999999876555554442 2235777776321110 0000
Q ss_pred eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC-CceeEEeeecC
Q 003886 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDG 499 (789)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~-~~~~~~~s~dg 499 (789)
. .+..++..+.|.+.+.++++++..+++ ++.+|.+||++.--.+..+ .+..+.|++..
T Consensus 250 --------~-~H~~GilslsWc~~D~~lllSsgkD~~--ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~ 308 (1049)
T KOG0307|consen 250 --------E-GHQRGILSLSWCPQDPRLLLSSGKDNR--IICWNPNTGEVLGELPAQGNWCFDVQWCPRN 308 (1049)
T ss_pred --------c-ccccceeeeccCCCCchhhhcccCCCC--eeEecCCCceEeeecCCCCcceeeeeecCCC
Confidence 0 123467788999887778777655554 5556888888754333322 23344566543
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.057 Score=56.10 Aligned_cols=63 Identities=13% Similarity=0.092 Sum_probs=47.3
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccC
Q 003886 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 375 (789)
Q Consensus 296 ~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~ 375 (789)
.+...+|+||+.. +++.+. ...++.+|+. .+.....+..+...+.
T Consensus 125 diydL~Ws~d~~~----l~s~s~---------------dns~~l~Dv~----------------~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 125 DIYDLAWSPDSNF----LVSGSV---------------DNSVRLWDVH----------------AGQLLAILDDHEHYVQ 169 (434)
T ss_pred chhhhhccCCCce----eeeeec---------------cceEEEEEec----------------cceeEeeccccccccc
Confidence 4567899999998 888762 3367888872 3344556777788899
Q ss_pred cceecCCCCEEEEEecCC
Q 003886 376 FPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 376 ~p~~SpDG~~la~~s~~~ 393 (789)
..+|-|-+++++-.+.+.
T Consensus 170 gvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 170 GVAWDPLNQYVASKSSDR 187 (434)
T ss_pred eeecchhhhhhhhhccCc
Confidence 999999999988777553
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.14 Score=51.01 Aligned_cols=119 Identities=15% Similarity=0.205 Sum_probs=71.2
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCC---CccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 158 AVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQ---TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~---~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
.-+|||||++|+-..++-+.+..++-+++ .....++-+.+. +. ..+.|++||+.|+.+-. .-+..
T Consensus 118 HGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGp----------Hev~lm~DGrtlvvanG-GIeth 186 (366)
T COG3490 118 HGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGP----------HEVTLMADGRTLVVANG-GIETH 186 (366)
T ss_pred ccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCc----------ceeEEecCCcEEEEeCC-ceecc
Confidence 45799999998766555555666777773 333444433322 23 47899999998886532 11111
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCC---CCCccceEEEeeCCCCCc
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP---KSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~---~~~~~~~~~wSPDg~~~~ 310 (789)
|.+.. -+.......+.|.++|..+|++..-...+ ...++..+..-+||.
T Consensus 187 pdfgR-------------------------~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgt--- 238 (366)
T COG3490 187 PDFGR-------------------------TELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGT--- 238 (366)
T ss_pred cccCc-------------------------cccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCc---
Confidence 11110 02222335689999998787653211133 245788899999998
Q ss_pred cEEEEEe
Q 003886 311 QYLVFVG 317 (789)
Q Consensus 311 ~~l~f~~ 317 (789)
|+|..
T Consensus 239 --vwfgc 243 (366)
T COG3490 239 --VWFGC 243 (366)
T ss_pred --EEEEE
Confidence 67765
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.041 Score=53.66 Aligned_cols=208 Identities=12% Similarity=0.077 Sum_probs=119.2
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
+...++||++-..++++..++ |+ ..+|+.+....-+..-+.... ++.++.|++-.+++...+.
T Consensus 62 ~LfdV~Wse~~e~~~~~a~GD-GS---Lrl~d~~~~s~Pi~~~kEH~~------EV~Svdwn~~~r~~~ltsS------- 124 (311)
T KOG0277|consen 62 GLFDVAWSENHENQVIAASGD-GS---LRLFDLTMPSKPIHKFKEHKR------EVYSVDWNTVRRRIFLTSS------- 124 (311)
T ss_pred ceeEeeecCCCcceEEEEecC-ce---EEEeccCCCCcchhHHHhhhh------heEEeccccccceeEEeec-------
Confidence 578899999999999887765 44 344433322222221111111 1257788887666655431
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~ 314 (789)
-+..|.+|+..-++-.... ......+.+.+|||--.. ++
T Consensus 125 ------------------------------------WD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp~~~n----lf 163 (311)
T KOG0277|consen 125 ------------------------------------WDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSPHIPN----LF 163 (311)
T ss_pred ------------------------------------cCCceEeecCCCCcceEee-cCCccEEEEEecCCCCCC----eE
Confidence 1245667776554432221 223346778999997665 43
Q ss_pred EEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCC
Q 003886 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 394 (789)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~ 394 (789)
-.+ + .++.+-.+|++ ..++...+..+...+..-.||.-...++.....+
T Consensus 164 as~-S-------------gd~~l~lwdvr----------------~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd- 212 (311)
T KOG0277|consen 164 ASA-S-------------GDGTLRLWDVR----------------SPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVD- 212 (311)
T ss_pred EEc-c-------------CCceEEEEEec----------------CCCceeEEEeccceeEeecccccCCcEEEecCCC-
Confidence 332 1 22344444542 2344444555666677788998777777766443
Q ss_pred CCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003886 395 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (789)
Q Consensus 395 ~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~d 474 (789)
+.|+.||+..=.. ++ ..+ .| ....+..+.|||-...|+.+++.+....||...
T Consensus 213 ---------~~vr~wDir~~r~-pl----~eL------------~g-h~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~ 265 (311)
T KOG0277|consen 213 ---------NLVRGWDIRNLRT-PL----FEL------------NG-HGLAVRKVKFSPHHASLLASASYDMTVRIWDPE 265 (311)
T ss_pred ---------ceEEEEehhhccc-cc----eee------------cC-CceEEEEEecCcchhhHhhhccccceEEecccc
Confidence 3588898854221 11 000 00 111345678999888898888888888888765
Q ss_pred CCCC
Q 003886 475 VSSG 478 (789)
Q Consensus 475 l~tg 478 (789)
...+
T Consensus 266 ~~ds 269 (311)
T KOG0277|consen 266 RQDS 269 (311)
T ss_pred cchh
Confidence 4333
|
|
| >PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.034 Score=55.05 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=63.3
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCch--hhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHH
Q 003886 578 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDV 655 (789)
Q Consensus 578 ~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~--~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~ 655 (789)
.|+..|+ ++. .||.+-||..-...+ .|....+.|+++||.|++.-|.-+--|... ...-....
T Consensus 8 ~wvl~P~-----~P~-gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~tfDH~~~---------A~~~~~~f 72 (250)
T PF07082_consen 8 SWVLIPP-----RPK-GVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVTFDHQAI---------AREVWERF 72 (250)
T ss_pred cEEEeCC-----CCC-EEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCCCcHHHH---------HHHHHHHH
Confidence 5677775 233 455555655433333 677888999999999999998631111111 11113455
Q ss_pred HHHHHHHHHcCCCCC--ccEEEEEcCccHHHHHHHHHhCC
Q 003886 656 LTAIDHVIDMGLANP--SKVTVVGGSHGGFLTTHLIGQAP 693 (789)
Q Consensus 656 ~~~i~~l~~~~~~d~--~rv~l~G~S~GG~~a~~~~~~~p 693 (789)
..+++.+.+++..+. -.+.=+|||+|+-+-+.+...++
T Consensus 73 ~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~ 112 (250)
T PF07082_consen 73 ERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFD 112 (250)
T ss_pred HHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhcc
Confidence 566777776644443 35777999999999888876654
|
Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.14 Score=51.64 Aligned_cols=165 Identities=21% Similarity=0.303 Sum_probs=87.3
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
..++..+|.||.++|+.+.+.. ..++.+...|+..+.+.+.+ . + ...++.+.-+++ ++.+.+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~---~~i~els~~G~vlr~i~l~g-~-~------D~EgI~y~g~~~-~vl~~E------ 83 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEP---GEIYELSLDGKVLRRIPLDG-F-G------DYEGITYLGNGR-YVLSEE------ 83 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTT---TEEEEEETT--EEEEEE-SS---S------SEEEEEE-STTE-EEEEET------
T ss_pred CCccccEEcCCCCeEEEEECCC---CEEEEEcCCCCEEEEEeCCC-C-C------CceeEEEECCCE-EEEEEc------
Confidence 3478899999999998887653 56888887777777777643 1 1 227888887774 333333
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccC--Cc-----eEecc-CCC--CCCccceEEEe
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS--GE-----VQAVK-GIP--KSLSVGQVVWA 303 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~--g~-----~~~l~-~~~--~~~~~~~~~wS 303 (789)
+...|+++++.. .. .+.+. +.+ .+..+..++|.
T Consensus 84 -------------------------------------r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D 126 (248)
T PF06977_consen 84 -------------------------------------RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYD 126 (248)
T ss_dssp -------------------------------------TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEE
T ss_pred -------------------------------------CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEc
Confidence 235677776632 21 12221 223 34567899999
Q ss_pred eCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCee---ecC---CCCCccCcc
Q 003886 304 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV---NLT---ESISSAFFP 377 (789)
Q Consensus 304 PDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~Lt---~~~~~~~~p 377 (789)
|.++. ++.+. +.. +..||.++.... . ...... .+. .........
T Consensus 127 ~~~~~----L~v~k-E~~------------P~~l~~~~~~~~---~----------~~~~~~~~~~~~~~~~~~~d~S~l 176 (248)
T PF06977_consen 127 PKTNR----LFVAK-ERK------------PKRLYEVNGFPG---G----------FDLFVSDDQDLDDDKLFVRDLSGL 176 (248)
T ss_dssp TTTTE----EEEEE-ESS------------SEEEEEEESTT----S----------S--EEEE-HHHH-HT--SS---EE
T ss_pred CCCCE----EEEEe-CCC------------ChhhEEEccccC---c----------cceeeccccccccccceeccccce
Confidence 99987 66554 322 234666653100 0 000000 000 111235667
Q ss_pred eecCCCCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 378 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 378 ~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
.+.|....|+.+|..+ ..|..+|..+
T Consensus 177 ~~~p~t~~lliLS~es----------~~l~~~d~~G 202 (248)
T PF06977_consen 177 SYDPRTGHLLILSDES----------RLLLELDRQG 202 (248)
T ss_dssp EEETTTTEEEEEETTT----------TEEEEE-TT-
T ss_pred EEcCCCCeEEEEECCC----------CeEEEECCCC
Confidence 7888888888888765 3588888543
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.41 Score=45.80 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=65.2
Q ss_pred CccCceEEEEEccCCce-EeccCCC-----CCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEec
Q 003886 269 GKRQPSLFVININSGEV-QAVKGIP-----KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 342 (789)
Q Consensus 269 ~~~~~~l~v~d~~~g~~-~~l~~~~-----~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~ 342 (789)
+.++..|..||+.-... ..+.... ....+..++-.|.|+. |+ .+. .++.-.++|+
T Consensus 200 gsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl----l~-sg~--------------~dssc~lydi 260 (350)
T KOG0641|consen 200 GSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL----LA-SGH--------------ADSSCMLYDI 260 (350)
T ss_pred cCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce----ee-ecc--------------CCCceEEEEe
Confidence 44567788888765433 3332111 1124567888999985 44 442 1224556666
Q ss_pred ccccchhhhhhhhcCCCCCC-CeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCc
Q 003886 343 SLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 419 (789)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~ 419 (789)
.++ .+++...+...+...+|||...+++..+-+ ..|.+-|++++-..++
T Consensus 261 -----------------rg~r~iq~f~phsadir~vrfsp~a~yllt~syd-----------~~ikltdlqgdla~el 310 (350)
T KOG0641|consen 261 -----------------RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYD-----------MKIKLTDLQGDLAHEL 310 (350)
T ss_pred -----------------eCCceeeeeCCCccceeEEEeCCCceEEEEeccc-----------ceEEEeecccchhhcC
Confidence 344 455666777789999999998888776644 3588888887544433
|
|
| >KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.014 Score=63.63 Aligned_cols=153 Identities=17% Similarity=0.155 Sum_probs=90.4
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHHH-HHHHHHCC--cEEEEEcCCC-CCCCCchhhccCCCCCCcccHHHHHHHHHHHHH
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSKS-LAFLSSVG--YSLLIVNYRG-SLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 664 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~-~~~la~~G--y~V~~~d~rG-s~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 664 (789)
-...|+++++||+|.......|.+. .+.|.-.| ..|..+|++- .+|-+ -....+-+..+.++.+.
T Consensus 173 v~~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~igG~n-----------I~h~ae~~vSf~r~kvl 241 (784)
T KOG3253|consen 173 VPASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIGGAN-----------IKHAAEYSVSFDRYKVL 241 (784)
T ss_pred ccCCceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCCCcc-----------hHHHHHHHHHHhhhhhh
Confidence 3457999999999833333344433 33444444 4566777762 22210 01113334444454333
Q ss_pred --cCCCCCccEEEEEcCccHHHHHHHHHhCCC-ceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChh
Q 003886 665 --MGLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVE 741 (789)
Q Consensus 665 --~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~-~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (789)
.+......|.|+|+|+|+.++.+......| .+.|+|+..=.++ .-+ +. + +.+
T Consensus 242 ei~gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~------~vd----------gp---r---gir--- 296 (784)
T KOG3253|consen 242 EITGEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLD------TVD----------GP---R---GIR--- 296 (784)
T ss_pred hhhccCCCCceEEEecccCceeeEEeccccCCceEEEEEEeccccc------CCC----------cc---c---CCc---
Confidence 355778899999999998888777665443 3566665421111 000 00 0 011
Q ss_pred hHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 742 DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 742 ~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
-+.+-.++.|+|++.|.+|.+|++..-+++.+..+.
T Consensus 297 ----------DE~Lldmk~PVLFV~Gsnd~mcspn~ME~vreKMqA 332 (784)
T KOG3253|consen 297 ----------DEALLDMKQPVLFVIGSNDHMCSPNSMEEVREKMQA 332 (784)
T ss_pred ----------chhhHhcCCceEEEecCCcccCCHHHHHHHHHHhhc
Confidence 123456789999999999999999999888887653
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.17 Score=53.49 Aligned_cols=71 Identities=13% Similarity=0.051 Sum_probs=43.9
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG 283 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g 283 (789)
-.++.||||++||+...+... ..|+..+....+.++.+..-+....|...-.+.|+...+..+-+|+++.-
T Consensus 206 l~~avS~Dgkylatgg~d~~v--~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~ 276 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATGGRDRHV--QIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL 276 (479)
T ss_pred EEEEEcCCCcEEEecCCCceE--EEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh
Confidence 478899999999997655432 24444444444445555544444455554456666666777777777643
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.038 Score=56.70 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=76.0
Q ss_pred HHHHHhhcCccccceEEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCcceecccEEEEeC
Q 003886 84 KLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPS 162 (789)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~S 162 (789)
+++..+...|.-.++..--+.++++.++||..++ ..+++.++++..- +++ .+..+. +.+.+.+||
T Consensus 117 klLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~-------t~GdV~l~d~~nl--~~v~~I~aH~-----~~lAalafs 182 (391)
T KOG2110|consen 117 KLLHTIETTPPNPKGLCALSPNNANCYLAYPGST-------TSGDVVLFDTINL--QPVNTINAHK-----GPLAALAFS 182 (391)
T ss_pred eeehhhhccCCCccceEeeccCCCCceEEecCCC-------CCceEEEEEcccc--eeeeEEEecC-----CceeEEEEC
Confidence 4666666665545544444556778899997543 2456777765221 111 122222 458889999
Q ss_pred CCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 163 PSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 163 PdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
|||..||..++.+ .++++....+..++.++..+.. --.+..++||||++.|+.+++.++
T Consensus 183 ~~G~llATASeKG----TVIRVf~v~~G~kl~eFRRG~~-----~~~IySL~Fs~ds~~L~~sS~TeT 241 (391)
T KOG2110|consen 183 PDGTLLATASEKG----TVIRVFSVPEGQKLYEFRRGTY-----PVSIYSLSFSPDSQFLAASSNTET 241 (391)
T ss_pred CCCCEEEEeccCc----eEEEEEEcCCccEeeeeeCCce-----eeEEEEEEECCCCCeEEEecCCCe
Confidence 9999999988765 5676663333344444322221 012368999999999988776543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.043 Score=61.44 Aligned_cols=169 Identities=14% Similarity=0.156 Sum_probs=93.0
Q ss_pred cccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCcc
Q 003886 122 ANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVH 201 (789)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 201 (789)
++.....+..+++..+.+........ ..+..++|||.-... |++..++| +..+|+--+..+-..--....
T Consensus 151 SGSQDg~vK~~DlR~~~S~~t~~~nS------ESiRDV~fsp~~~~~-F~s~~dsG---~lqlWDlRqp~r~~~k~~AH~ 220 (839)
T KOG0269|consen 151 SGSQDGTVKCWDLRSKKSKSTFRSNS------ESIRDVKFSPGYGNK-FASIHDSG---YLQLWDLRQPDRCEKKLTAHN 220 (839)
T ss_pred ecCCCceEEEEeeecccccccccccc------hhhhceeeccCCCce-EEEecCCc---eEEEeeccCchhHHHHhhccc
Confidence 44566777788875544322211111 347789999965443 33333334 455553222221111111233
Q ss_pred ccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEcc
Q 003886 202 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 281 (789)
Q Consensus 202 g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 281 (789)
|.| ..+.|+|++.+||... ++..+.+||..
T Consensus 221 GpV------~c~nwhPnr~~lATGG--------------------------------------------RDK~vkiWd~t 250 (839)
T KOG0269|consen 221 GPV------LCLNWHPNREWLATGG--------------------------------------------RDKMVKIWDMT 250 (839)
T ss_pred Cce------EEEeecCCCceeeecC--------------------------------------------CCccEEEEecc
Confidence 444 7899999999999753 33568888887
Q ss_pred CCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCC
Q 003886 282 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 361 (789)
Q Consensus 282 ~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 361 (789)
+++...+-.+..-..++.+.|-|+-..- |+-.+... ...|+++|+.. .-
T Consensus 251 ~~~~~~~~tInTiapv~rVkWRP~~~~h---LAtcsmv~-------------dtsV~VWDvrR---------------PY 299 (839)
T KOG0269|consen 251 DSRAKPKHTINTIAPVGRVKWRPARSYH---LATCSMVV-------------DTSVHVWDVRR---------------PY 299 (839)
T ss_pred CCCccceeEEeecceeeeeeeccCccch---hhhhhccc-------------cceEEEEeecc---------------cc
Confidence 7655433113334567899999987751 44444222 23688888731 11
Q ss_pred CCeeecCCCCCccCcceecC
Q 003886 362 LPVVNLTESISSAFFPRFSP 381 (789)
Q Consensus 362 ~~~~~Lt~~~~~~~~p~~Sp 381 (789)
-....+..+........|-.
T Consensus 300 IP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 300 IPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred ccceeeeccCccccceeccC
Confidence 23344555555566666643
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.76 Score=46.13 Aligned_cols=56 Identities=23% Similarity=0.455 Sum_probs=37.7
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEe--cC--CceeEEEecCCCccccccCCCcccceeecCCCCEEEEE
Q 003886 158 AVVPSPSGSKLLVVRNPENESPIQFELW--SQ--SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 225 (789)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~--~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~ 225 (789)
..+.+.||+.||.+.+. .++|. .+ +.......++.+.+ -+...+.||||+..|||+
T Consensus 2 ~~~~~~~Gk~lAi~qd~------~iEiRsa~Ddf~si~~kcqVpkD~~------PQWRkl~WSpD~tlLa~a 61 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQ------CIEIRSAKDDFSSIIGKCQVPKDPN------PQWRKLAWSPDCTLLAYA 61 (282)
T ss_pred ceeecCCCcEEEEEecc------EEEEEeccCCchheeEEEecCCCCC------chheEEEECCCCcEEEEE
Confidence 35788999999998764 46666 22 23334445554442 123579999999999997
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.33 Score=48.42 Aligned_cols=148 Identities=15% Similarity=0.095 Sum_probs=84.2
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeec-CC----
Q 003886 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNL-TE---- 369 (789)
Q Consensus 296 ~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~L-t~---- 369 (789)
.+.-+.|-|++++ |+.+.. .+|..+++. ++.+ ...| ..
T Consensus 125 ~i~cvew~Pns~k----lasm~d----------------n~i~l~~l~----------------ess~~vaev~ss~s~e 168 (370)
T KOG1007|consen 125 KINCVEWEPNSDK----LASMDD----------------NNIVLWSLD----------------ESSKIVAEVLSSESAE 168 (370)
T ss_pred ceeeEEEcCCCCe----eEEecc----------------CceEEEEcc----------------cCcchheeeccccccc
Confidence 4567899999999 887761 256677763 2222 1111 11
Q ss_pred CCCccCcceecC--CCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCC
Q 003886 370 SISSAFFPRFSP--DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 447 (789)
Q Consensus 370 ~~~~~~~p~~Sp--DG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~ 447 (789)
+....++-+||| ||++++.++.. .|+.||+.+.....-.... ....+.
T Consensus 169 ~~~~ftsg~WspHHdgnqv~tt~d~------------tl~~~D~RT~~~~~sI~dA------------------Hgq~vr 218 (370)
T KOG1007|consen 169 MRHSFTSGAWSPHHDGNQVATTSDS------------TLQFWDLRTMKKNNSIEDA------------------HGQRVR 218 (370)
T ss_pred ccceecccccCCCCccceEEEeCCC------------cEEEEEccchhhhcchhhh------------------hcceee
Confidence 123466779998 99998877644 4899998875442111111 111234
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCC
Q 003886 448 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~ 509 (789)
.+.|.|+-..++++..+++..+||-....+-.++.+.........+-|.+..+.|+.+.++.
T Consensus 219 dlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 219 DLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred eccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 56788888888888888888888865433333333322221111124455555555554433
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.17 Score=49.50 Aligned_cols=178 Identities=13% Similarity=0.176 Sum_probs=104.6
Q ss_pred cCceEEEEEccC-CceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchh
Q 003886 271 RQPSLFVININS-GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (789)
Q Consensus 271 ~~~~l~v~d~~~-g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (789)
+...|+++++.. +.++.+....-......++||+.-.. +++++- .+..|.++|+..
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~----~~~~a~--------------GDGSLrl~d~~~----- 92 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHEN----QVIAAS--------------GDGSLRLFDLTM----- 92 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcc----eEEEEe--------------cCceEEEeccCC-----
Confidence 568899999963 33333321222346679999999888 777763 233566666521
Q ss_pred hhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEee
Q 003886 350 SELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (789)
Q Consensus 350 ~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~ 429 (789)
..+.++.+.++...+.+..|++--++.+.++.=+ ..|.+|+..-.+..+.
T Consensus 93 ----------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD----------~TiKLW~~~r~~Sv~T---------- 142 (311)
T KOG0277|consen 93 ----------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWD----------GTIKLWDPNRPNSVQT---------- 142 (311)
T ss_pred ----------CCcchhHHHhhhhheEEeccccccceeEEeeccC----------CceEeecCCCCcceEe----------
Confidence 3455666777777888899998766665555211 2366666433222111
Q ss_pred eeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCC
Q 003886 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~ 509 (789)
|.| ...-+....|+|.-.-++.+.+.++..+||-++.. |+..-|......+---.|+.-...++++....
T Consensus 143 --------f~g-h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~-gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd 212 (311)
T KOG0277|consen 143 --------FNG-HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP-GKFMSIEAHNSEILCCDWSKYNHNVLATGGVD 212 (311)
T ss_pred --------ecC-CccEEEEEecCCCCCCeEEEccCCceEEEEEecCC-CceeEEEeccceeEeecccccCCcEEEecCCC
Confidence 111 01123466899877778888888889999988876 44433443332222223444445566666555
Q ss_pred CC
Q 003886 510 VD 511 (789)
Q Consensus 510 ~~ 511 (789)
..
T Consensus 213 ~~ 214 (311)
T KOG0277|consen 213 NL 214 (311)
T ss_pred ce
Confidence 43
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.068 Score=56.52 Aligned_cols=214 Identities=14% Similarity=0.102 Sum_probs=114.3
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEec-CCCccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~-~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
+-+.+.+-+|+|.+|+-....+ ++ .+| ..|....+..- -+.+ ..+.||-||..|...+.+..
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g----~l-YlWelssG~LL~v~~aHYQ~I----------TcL~fs~dgs~iiTgskDg~ 146 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISG----NL-YLWELSSGILLNVLSAHYQSI----------TCLKFSDDGSHIITGSKDGA 146 (476)
T ss_pred cceeeeecCCCceEEEeecccC----cE-EEEEeccccHHHHHHhhccce----------eEEEEeCCCcEEEecCCCcc
Confidence 5588899999999886432221 23 355 45655443321 1222 67888888888877666654
Q ss_pred CCCCCccC---C----CCCCCCCCcCCCCCCCcce--eeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEE
Q 003886 231 PSKPTFSL---G----STKGGSSDKDCNSWKGQGD--WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVV 301 (789)
Q Consensus 231 ~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~--~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~ 301 (789)
.-.+.... . ..+....+.++..-+.+.. +.+--+..|+...+..+.+||+..|.+..- +.-+.....++
T Consensus 147 V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt--i~fp~si~av~ 224 (476)
T KOG0646|consen 147 VLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT--ITFPSSIKAVA 224 (476)
T ss_pred EEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE--EecCCcceeEE
Confidence 33211110 0 0111122222222111110 000002334445678899999999965432 34455677889
Q ss_pred EeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcC-CCCCCCeeecCCCCC--ccCcce
Q 003886 302 WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKES-SSEDLPVVNLTESIS--SAFFPR 378 (789)
Q Consensus 302 wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~Lt~~~~--~~~~p~ 378 (789)
.+|-++ .+|++.+.+ .||..++-..+...... +... .....+...+..+.+ .++..+
T Consensus 225 lDpae~-----~~yiGt~~G--------------~I~~~~~~~~~~~~~~v-~~k~~~~~~t~~~~~~Gh~~~~~ITcLa 284 (476)
T KOG0646|consen 225 LDPAER-----VVYIGTEEG--------------KIFQNLLFKLSGQSAGV-NQKGRHEENTQINVLVGHENESAITCLA 284 (476)
T ss_pred Eccccc-----EEEecCCcc--------------eEEeeehhcCCcccccc-cccccccccceeeeeccccCCcceeEEE
Confidence 999877 577774433 46666552111000000 0000 012334455666655 688899
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCC
Q 003886 379 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 379 ~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
+|-||..|+.-+.+ ..+.+||..+.+
T Consensus 285 is~DgtlLlSGd~d-----------g~VcvWdi~S~Q 310 (476)
T KOG0646|consen 285 ISTDGTLLLSGDED-----------GKVCVWDIYSKQ 310 (476)
T ss_pred EecCccEEEeeCCC-----------CCEEEEecchHH
Confidence 99999977654433 258899987644
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.23 Score=56.82 Aligned_cols=260 Identities=13% Similarity=0.131 Sum_probs=140.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
.++-..+|.|.--+|+..--. ..+.+|+ -+.....++ ...|+| .++.|.|++-. |++..+..
T Consensus 10 sRvKglsFHP~rPwILtslHs-----G~IQlWDYRM~tli~rFd---eHdGpV------Rgv~FH~~qpl--FVSGGDDy 73 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHS-----GVIQLWDYRMGTLIDRFD---EHDGPV------RGVDFHPTQPL--FVSGGDDY 73 (1202)
T ss_pred ccccceecCCCCCEEEEeecC-----ceeeeehhhhhhHHhhhh---ccCCcc------ceeeecCCCCe--EEecCCcc
Confidence 346677899998888865433 3677773 333332222 223344 89999999874 44443333
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
....|+...+...-....+..|+....|....--.++...+..|.+|+-.+++...+. +...-.+--..|.|....
T Consensus 74 kIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl-tGHnHYVMcAqFhptEDl--- 149 (1202)
T KOG0292|consen 74 KIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL-TGHNHYVMCAQFHPTEDL--- 149 (1202)
T ss_pred EEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE-ecCceEEEeeccCCccce---
Confidence 4446665555555666677777776666544333344556788999999998876652 333345667789997776
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhh--hhc-------CCCC---CCCe-eecCCCCCccCcce
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE--LKE-------SSSE---DLPV-VNLTESISSAFFPR 378 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~--~~~-------~~~~---~~~~-~~Lt~~~~~~~~p~ 378 (789)
|+..+- +..|.++|+.+..++.-.+- .++ ...- ...+ ..|.++...+...+
T Consensus 150 -IVSaSL---------------DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaA 213 (1202)
T KOG0292|consen 150 -IVSASL---------------DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAA 213 (1202)
T ss_pred -EEEecc---------------cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEE
Confidence 666652 23566677643222110000 000 0000 0111 23445566677778
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEE
Q 003886 379 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 458 (789)
Q Consensus 379 ~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l 458 (789)
|.|-=-.|+..+.+ ..-.||+|+-.. . +++ +. | .| +..++..+-|.|... +
T Consensus 214 fhpTlpliVSG~DD---------RqVKlWrmnetK-a--------WEv-Dt-------c-rg-H~nnVssvlfhp~q~-l 264 (1202)
T KOG0292|consen 214 FHPTLPLIVSGADD---------RQVKLWRMNETK-A--------WEV-DT-------C-RG-HYNNVSSVLFHPHQD-L 264 (1202)
T ss_pred ecCCcceEEecCCc---------ceeeEEEecccc-c--------eee-hh-------h-hc-ccCCcceEEecCccc-e
Confidence 88764433322222 123466665221 1 111 00 0 01 112456677888655 6
Q ss_pred EEEEEeCCeEEEEEEECCCC
Q 003886 459 LLSSIWGSSQVIISVNVSSG 478 (789)
Q Consensus 459 ~~~~~~~~~~~l~~~dl~tg 478 (789)
+++...+...++|-++-.|+
T Consensus 265 IlSnsEDksirVwDm~kRt~ 284 (1202)
T KOG0292|consen 265 ILSNSEDKSIRVWDMTKRTS 284 (1202)
T ss_pred eEecCCCccEEEEecccccc
Confidence 66766666677776654443
|
|
| >PLN03016 sinapoylglucose-malate O-sinapoyltransferase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.042 Score=60.55 Aligned_cols=132 Identities=19% Similarity=0.284 Sum_probs=80.1
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchh-hHHH--H------------------HHHHHCCcEEEEEcCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YSKS--L------------------AFLSSVGYSLLIVNYR 630 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~-~~~~--~------------------~~la~~Gy~V~~~d~r 630 (789)
.+..+.-|++...+ .....|+|+++-|||++..... |... + .-+. +-..++.+|.+
T Consensus 48 ~~~~lfy~f~es~~--~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~-~~anllfiDqP 124 (433)
T PLN03016 48 ENVQFFYYFIKSEN--NPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWT-KMANIIFLDQP 124 (433)
T ss_pred CCeEEEEEEEecCC--CcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchh-hcCcEEEecCC
Confidence 45668888887653 3457899999999999643211 1100 0 0111 22678999976
Q ss_pred CCCCCCchhhccCCCCCCc-ccHHHHHHHHHHHHH-cCCCCCccEEEEEcCccHHHHHHHHHh----C------CCceeE
Q 003886 631 GSLGFGEEALQSLPGKVGS-QDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVA 698 (789)
Q Consensus 631 Gs~G~G~~~~~~~~~~~~~-~~~~D~~~~i~~l~~-~~~~d~~rv~l~G~S~GG~~a~~~~~~----~------p~~~~a 698 (789)
-+.||...... ...... .+++|+..++....+ .+..-..++.|+|.||||..+..+|.. . +-.+|+
T Consensus 125 vGtGfSy~~~~--~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~inLkG 202 (433)
T PLN03016 125 VGSGFSYSKTP--IDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQG 202 (433)
T ss_pred CCCCccCCCCC--CCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCccccee
Confidence 44677543211 111111 123566666555544 344456779999999999876666542 1 126889
Q ss_pred EEEeCCccch
Q 003886 699 AAARNPLCNL 708 (789)
Q Consensus 699 ~v~~~pv~~~ 708 (789)
+++.+|.++.
T Consensus 203 i~iGNg~t~~ 212 (433)
T PLN03016 203 YMLGNPVTYM 212 (433)
T ss_pred eEecCCCcCc
Confidence 9999998765
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.11 E-value=4.1 Score=48.91 Aligned_cols=88 Identities=8% Similarity=0.085 Sum_probs=48.1
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
..|.|||.+ |..... +.+.......++|-|.|.. |+....... ...|..+.-.+
T Consensus 222 RkirV~drE-g~Lns~-se~~~~l~~~LsWkPsgs~----iA~iq~~~s------------d~~IvffErNG-------- 275 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNST-SEPVEGLQHSLSWKPSGSL----IAAIQCKTS------------DSDIVFFERNG-------- 275 (1265)
T ss_pred eeEEEeccc-chhhcc-cCcccccccceeecCCCCe----EeeeeecCC------------CCcEEEEecCC--------
Confidence 567888877 544333 1233445668999999988 777653222 22344443200
Q ss_pred hhhcCCCCCCCee-ecCCCCCccCcceecCCCCEEEEEecC
Q 003886 353 ELKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 353 ~~~~~~~~~~~~~-~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
..-++.. ........+...+|+.++..|+.....
T Consensus 276 ------L~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~ 310 (1265)
T KOG1920|consen 276 ------LRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSN 310 (1265)
T ss_pred ------ccccccccCCcccccchheeeecCCCCceeeeecc
Confidence 0111111 111122237889999999998875533
|
|
| >PLN02209 serine carboxypeptidase | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.026 Score=62.17 Aligned_cols=133 Identities=20% Similarity=0.280 Sum_probs=80.9
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhh-HHH--H------------------HHHHHCCcEEEEEcCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKS--L------------------AFLSSVGYSLLIVNYR 630 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~-~~~--~------------------~~la~~Gy~V~~~d~r 630 (789)
.+..+.-|++.... .....|+|+++-|||++...... ... + .-+.+ -..++.+|.+
T Consensus 50 ~~~~lf~~f~es~~--~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~-~anllfiDqP 126 (437)
T PLN02209 50 ENVQFFYYFIKSDK--NPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTK-TANIIFLDQP 126 (437)
T ss_pred CCeEEEEEEEecCC--CCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhh-cCcEEEecCC
Confidence 45667778877652 34568999999999996532211 100 0 01112 2578999977
Q ss_pred CCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHc-CCCCCccEEEEEcCccHHHHHHHHHh----C------CCceeEE
Q 003886 631 GSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAA 699 (789)
Q Consensus 631 Gs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~~~~----~------p~~~~a~ 699 (789)
-.+||+........ .....+++|+..++....++ +..-..++.|+|.||||..+..++.. . +-.++++
T Consensus 127 vGtGfSy~~~~~~~-~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~~~inl~Gi 205 (437)
T PLN02209 127 VGSGFSYSKTPIER-TSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCNPPINLQGY 205 (437)
T ss_pred CCCCccCCCCCCCc-cCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccCCceeeeeE
Confidence 55777643211111 11123356666766655543 44445679999999999876666542 1 1257899
Q ss_pred EEeCCccch
Q 003886 700 AARNPLCNL 708 (789)
Q Consensus 700 v~~~pv~~~ 708 (789)
++.+|.++.
T Consensus 206 ~igng~td~ 214 (437)
T PLN02209 206 VLGNPITHI 214 (437)
T ss_pred EecCcccCh
Confidence 999998875
|
|
| >PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.1 Score=55.03 Aligned_cols=129 Identities=12% Similarity=0.118 Sum_probs=78.8
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchh-hHHHHHHHHHCCcEEEEEcCCCCCCC-Cchhhc--------
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YSKSLAFLSSVGYSLLIVNYRGSLGF-GEEALQ-------- 641 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~-~~~~~~~la~~Gy~V~~~d~rGs~G~-G~~~~~-------- 641 (789)
++.++-+ ++.|.. .++...+||++||.+.+..... .......|.+.||.++++....-.+. -..+..
T Consensus 70 ~~~~fla-L~~~~~--~~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~~~~~~~~~~a 146 (310)
T PF12048_consen 70 GEERFLA-LWRPAN--SAKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPASPNRATEAEEVPSA 146 (310)
T ss_pred CCEEEEE-EEeccc--CCCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCcccccCCccCCCCCCCCCC
Confidence 4455555 555652 5667889999999665543333 33455678999999999887641100 000000
Q ss_pred ---cCCCC-----------------CCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCC-ceeEEE
Q 003886 642 ---SLPGK-----------------VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAA 700 (789)
Q Consensus 642 ---~~~~~-----------------~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~-~~~a~v 700 (789)
..... .-..-..-+.+++.++.+++ ..+|+|+||+.|+++++.++...+. .+.++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~---~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV 223 (310)
T PF12048_consen 147 GDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQG---GKNIVLIGHGTGAGWAARYLAEKPPPMPDALV 223 (310)
T ss_pred CCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcC---CceEEEEEeChhHHHHHHHHhcCCCcccCeEE
Confidence 00000 00011233455566666654 4569999999999999999987654 478999
Q ss_pred EeCCcc
Q 003886 701 ARNPLC 706 (789)
Q Consensus 701 ~~~pv~ 706 (789)
++++..
T Consensus 224 ~I~a~~ 229 (310)
T PF12048_consen 224 LINAYW 229 (310)
T ss_pred EEeCCC
Confidence 988754
|
This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes. |
| >COG4782 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.043 Score=56.94 Aligned_cols=111 Identities=14% Similarity=0.232 Sum_probs=69.5
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCc--EEEEEcCC--CC-CCCCchhhccCCCCCCcccHHHHHHHHHHHHH
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYR--GS-LGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 664 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy--~V~~~d~r--Gs-~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 664 (789)
...-++||+||...+. ...-....+.....|+ +.+.+-.+ |+ .||.- ...-..+...++...+++|.+
T Consensus 114 ~~k~vlvFvHGfNntf-~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~------DreS~~~Sr~aLe~~lr~La~ 186 (377)
T COG4782 114 SAKTVLVFVHGFNNTF-EDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNY------DRESTNYSRPALERLLRYLAT 186 (377)
T ss_pred CCCeEEEEEcccCCch-hHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeeccc------chhhhhhhHHHHHHHHHHHHh
Confidence 4568999999954432 1222234455555553 44445444 22 12211 111223446788899999988
Q ss_pred cCCCCCccEEEEEcCccHHHHHHHHHh--------CCCceeEEEEeCCccchh
Q 003886 665 MGLANPSKVTVVGGSHGGFLTTHLIGQ--------APDKFVAAAARNPLCNLA 709 (789)
Q Consensus 665 ~~~~d~~rv~l~G~S~GG~~a~~~~~~--------~p~~~~a~v~~~pv~~~~ 709 (789)
.. ...+|.|++||||.++++.++-+ .+..|+-+|+.+|=.|..
T Consensus 187 ~~--~~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~D 237 (377)
T COG4782 187 DK--PVKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDVD 237 (377)
T ss_pred CC--CCceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCChh
Confidence 74 35789999999999999987643 134688899999976653
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.13 Score=54.77 Aligned_cols=138 Identities=17% Similarity=0.200 Sum_probs=83.2
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~ 235 (789)
+....+||.-+.|+.+...+ ....+|+........+... .|.+ .-.++.|||-...|+....
T Consensus 167 vRll~ys~skr~lL~~asd~----G~VtlwDv~g~sp~~~~~~-~HsA-----P~~gicfspsne~l~vsVG-------- 228 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDK----GAVTLWDVQGMSPIFHASE-AHSA-----PCRGICFSPSNEALLVSVG-------- 228 (673)
T ss_pred EEEeecccccceeeEeeccC----CeEEEEeccCCCcccchhh-hccC-----CcCcceecCCccceEEEec--------
Confidence 45788999999998876554 2667774332333333211 1211 1168999998766554321
Q ss_pred ccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEE
Q 003886 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 315 (789)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f 315 (789)
-+..|+++|....+...- +..+.....++|+++|-. |+.
T Consensus 229 -----------------------------------~Dkki~~yD~~s~~s~~~--l~y~~Plstvaf~~~G~~----L~a 267 (673)
T KOG4378|consen 229 -----------------------------------YDKKINIYDIRSQASTDR--LTYSHPLSTVAFSECGTY----LCA 267 (673)
T ss_pred -----------------------------------ccceEEEeecccccccce--eeecCCcceeeecCCceE----EEe
Confidence 124688888876544322 234556779999999986 554
Q ss_pred EeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCC
Q 003886 316 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPD 382 (789)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpD 382 (789)
.. -+..|+.||+.. ....+..+..+...+...+|-|-
T Consensus 268 G~---------------s~G~~i~YD~R~---------------~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 268 GN---------------SKGELIAYDMRS---------------TKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred ec---------------CCceEEEEeccc---------------CCCCceEeeecccceeEEEeeec
Confidence 33 234799999852 22344556666666777777543
|
|
| >KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.048 Score=59.66 Aligned_cols=135 Identities=19% Similarity=0.203 Sum_probs=84.7
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHH---------HH------HCCcEEEEEcCCCCCCC
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAF---------LS------SVGYSLLIVNYRGSLGF 635 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~---------la------~~Gy~V~~~d~rGs~G~ 635 (789)
..+..|..|++.... ..+..|+||++-|||+...........-. |. .+--.++.+|-+-..||
T Consensus 54 ~~~~~LFYwf~eS~~--~P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfLd~PvGvGF 131 (454)
T KOG1282|consen 54 SEGRQLFYWFFESEN--NPETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANILFLDQPVGVGF 131 (454)
T ss_pred CCCceEEEEEEEccC--CCCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccccEEEEecCCcCCc
Confidence 467889999998752 45668999999999996533321111000 00 11136788888754666
Q ss_pred CchhhccCCCCCCc-ccHHHHHHH-HHHHHHcCCCCCccEEEEEcCccHHHHHHHHHh----C------CCceeEEEEeC
Q 003886 636 GEEALQSLPGKVGS-QDVNDVLTA-IDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ----A------PDKFVAAAARN 703 (789)
Q Consensus 636 G~~~~~~~~~~~~~-~~~~D~~~~-i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~----~------p~~~~a~v~~~ 703 (789)
.-+...... ..+. ...+|...+ .+|+.+.+..-...+.|.|-||+|...-.+|.. . +-.+|++++.+
T Consensus 132 SYs~~~~~~-~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLkG~~IGN 210 (454)
T KOG1282|consen 132 SYSNTSSDY-KTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLKGYAIGN 210 (454)
T ss_pred cccCCCCcC-cCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccceEEEecC
Confidence 543322111 1222 224666665 455555677777889999999999776666542 1 12689999999
Q ss_pred Cccch
Q 003886 704 PLCNL 708 (789)
Q Consensus 704 pv~~~ 708 (789)
|++|.
T Consensus 211 g~td~ 215 (454)
T KOG1282|consen 211 GLTDP 215 (454)
T ss_pred cccCc
Confidence 98875
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.90 E-value=2.4 Score=43.21 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=65.6
Q ss_pred cceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 335 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 335 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
.+|-++|+... ..+.+..+..+...+...+.+-+|..||..|.+++ -|.++|..+|
T Consensus 159 GqvQi~dL~~~--------------~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGT----------LIRIFdt~~g 214 (346)
T KOG2111|consen 159 GQVQIVDLAST--------------KPNAPSIINAHDSDIACVALNLQGTLVATASTKGT----------LIRIFDTEDG 214 (346)
T ss_pred ceEEEEEhhhc--------------CcCCceEEEcccCceeEEEEcCCccEEEEeccCcE----------EEEEEEcCCC
Confidence 47888888210 22234566677778888999999999999887752 3777888877
Q ss_pred CCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003886 415 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 415 ~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
+..+.-....+ ...+..+.||||+..|.+ +++.|+.+++.+..
T Consensus 215 ~~l~E~RRG~d-----------------~A~iy~iaFSp~~s~Lav-sSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 215 TLLQELRRGVD-----------------RADIYCIAFSPNSSWLAV-SSDKGTLHIFSLRD 257 (346)
T ss_pred cEeeeeecCCc-----------------hheEEEEEeCCCccEEEE-EcCCCeEEEEEeec
Confidence 66422111000 013456789999986654 56678888888764
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.63 Score=49.27 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=83.8
Q ss_pred CccCceEEEEEccCCce--Eecc---CCC-CCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEec
Q 003886 269 GKRQPSLFVININSGEV--QAVK---GIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRV 342 (789)
Q Consensus 269 ~~~~~~l~v~d~~~g~~--~~l~---~~~-~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~ 342 (789)
+..+..|.+||+..... ..+. -.. ....+..++|.|-.+.. +.+++ ..+.|.++|+
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~l---F~sv~---------------dd~~L~iwD~ 257 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDL---FGSVG---------------DDGKLMIWDT 257 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhh---heeec---------------CCCeEEEEEc
Confidence 33456788888765322 1110 011 23367889999977761 23333 2347888998
Q ss_pred ccccchhhhhhhhcCCCCCCCe-eecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCccc
Q 003886 343 SLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE 421 (789)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~ 421 (789)
+. .+.+. .....+.+.+...+|+|-+..|+-+... ...|.+||+..-.....+.
T Consensus 258 R~---------------~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~----------D~tV~LwDlRnL~~~lh~~ 312 (422)
T KOG0264|consen 258 RS---------------NTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA----------DKTVALWDLRNLNKPLHTF 312 (422)
T ss_pred CC---------------CCCCCcccccccCCceeEEEeCCCCCceEEeccC----------CCcEEEeechhcccCceec
Confidence 42 01222 2333446667888999976655433322 2358999986522211111
Q ss_pred ceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003886 422 KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 422 ~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
.+ ....+..+.|||+...++.++..+++..+|.+.-
T Consensus 313 -----------------e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 313 -----------------EG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred -----------------cC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 00 1123457789999999998888777777776554
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.068 Score=58.79 Aligned_cols=154 Identities=12% Similarity=0.138 Sum_probs=87.5
Q ss_pred cccceeecCCCCEEEEEeecCCCCCCCccCCCC--CCCCCCcCCCCCCCccee-eCCccccc-CCccCceEEEEEccCCc
Q 003886 209 WFEGISWNSDETLIAYVAEEPSPSKPTFSLGST--KGGSSDKDCNSWKGQGDW-EEDWGETY-AGKRQPSLFVININSGE 284 (789)
Q Consensus 209 ~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~d~g~~~-~~~~~~~l~v~d~~~g~ 284 (789)
|...+..--+|+.|..++.+.+.. .|+.... -......++..|+....+ ..+ .+.. ++.-+..||+||+.+|.
T Consensus 75 WVNDiiL~~~~~tlIS~SsDtTVK--~W~~~~~~~~c~stir~H~DYVkcla~~ak~-~~lvaSgGLD~~IflWDin~~~ 151 (735)
T KOG0308|consen 75 WVNDIILCGNGKTLISASSDTTVK--VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKN-NELVASGGLDRKIFLWDINTGT 151 (735)
T ss_pred HHhhHHhhcCCCceEEecCCceEE--EeecccCcchhHhhhhcccchheeeeecccC-ceeEEecCCCccEEEEEccCcc
Confidence 346666667777777766665433 3432211 122334456666655455 222 2332 23346789999999885
Q ss_pred eEeccCCCC-----------CCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhh
Q 003886 285 VQAVKGIPK-----------SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 353 (789)
Q Consensus 285 ~~~l~~~~~-----------~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~ 353 (789)
.+.+. ... ..++.+++-.+.|. ++..+ .....|..+|..
T Consensus 152 ~~l~~-s~n~~t~~sl~sG~k~siYSLA~N~t~t-----~ivsG--------------gtek~lr~wDpr---------- 201 (735)
T KOG0308|consen 152 ATLVA-SFNNVTVNSLGSGPKDSIYSLAMNQTGT-----IIVSG--------------GTEKDLRLWDPR---------- 201 (735)
T ss_pred hhhhh-hccccccccCCCCCccceeeeecCCcce-----EEEec--------------CcccceEEeccc----------
Confidence 53221 111 11233333334442 22222 123367788862
Q ss_pred hhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecC
Q 003886 354 LKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 412 (789)
Q Consensus 354 ~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~ 412 (789)
...+...|-.+...+.....++||++++..+.+. .|.+||+.
T Consensus 202 ------t~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDg-----------tIrlWdLg 243 (735)
T KOG0308|consen 202 ------TCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDG-----------TIRLWDLG 243 (735)
T ss_pred ------cccceeeeeccccceEEEEEcCCCCeEeecCCCc-----------eEEeeecc
Confidence 3445667777777888999999999998777553 48888874
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.94 Score=45.83 Aligned_cols=176 Identities=12% Similarity=0.167 Sum_probs=86.1
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
++++|.||.++|+.+.+.+ ..|+.++.++.-.+.+.
T Consensus 25 SGLTy~pd~~tLfaV~d~~-------------------------------------------~~i~els~~G~vlr~i~- 60 (248)
T PF06977_consen 25 SGLTYNPDTGTLFAVQDEP-------------------------------------------GEIYELSLDGKVLRRIP- 60 (248)
T ss_dssp EEEEEETTTTEEEEEETTT-------------------------------------------TEEEEEETT--EEEEEE-
T ss_pred cccEEcCCCCeEEEEECCC-------------------------------------------CEEEEEcCCCCEEEEEe-
Confidence 8999999999988775542 67889998654444543
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecC--
Q 003886 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-- 368 (789)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-- 368 (789)
..+......+++.-+|+ ++.+. .|...|+.++++.... .......+.++
T Consensus 61 l~g~~D~EgI~y~g~~~-----~vl~~--------------Er~~~L~~~~~~~~~~----------~~~~~~~~~~~l~ 111 (248)
T PF06977_consen 61 LDGFGDYEGITYLGNGR-----YVLSE--------------ERDQRLYIFTIDDDTT----------SLDRADVQKISLG 111 (248)
T ss_dssp -SS-SSEEEEEE-STTE-----EEEEE--------------TTTTEEEEEEE----T----------T--EEEEEEEE--
T ss_pred CCCCCCceeEEEECCCE-----EEEEE--------------cCCCcEEEEEEecccc----------ccchhhceEEecc
Confidence 33334566778876664 34443 1344788887731100 00011112222
Q ss_pred ---CCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccC
Q 003886 369 ---ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 445 (789)
Q Consensus 369 ---~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~ 445 (789)
.++......+|.|.++.|+.+..+. ...|+-++...+... + .+........ ..+....
T Consensus 112 ~~~~~N~G~EGla~D~~~~~L~v~kE~~---------P~~l~~~~~~~~~~~-~-----~~~~~~~~~~----~~~~~~d 172 (248)
T PF06977_consen 112 FPNKGNKGFEGLAYDPKTNRLFVAKERK---------PKRLYEVNGFPGGFD-L-----FVSDDQDLDD----DKLFVRD 172 (248)
T ss_dssp -S---SS--EEEEEETTTTEEEEEEESS---------SEEEEEEESTT-SS--------EEEE-HHHH-----HT--SS-
T ss_pred cccCCCcceEEEEEcCCCCEEEEEeCCC---------ChhhEEEccccCccc-e-----eecccccccc----ccceecc
Confidence 1233467899999999988776543 234666664221110 0 0000000000 0011123
Q ss_pred CCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003886 446 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (789)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~ 481 (789)
++.+.+.|....||+.+... ..|..+|. +|++.
T Consensus 173 ~S~l~~~p~t~~lliLS~es--~~l~~~d~-~G~~~ 205 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDES--RLLLELDR-QGRVV 205 (248)
T ss_dssp --EEEEETTTTEEEEEETTT--TEEEEE-T-T--EE
T ss_pred ccceEEcCCCCeEEEEECCC--CeEEEECC-CCCEE
Confidence 45667888877888876433 35677785 56553
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.048 Score=58.84 Aligned_cols=132 Identities=20% Similarity=0.279 Sum_probs=84.9
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcC-CCCCCCchhh-----HHHHHHHHHCCcEEEEEcCCCCCCCCchhhc
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHG-GPHSVSLSSY-----SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ 641 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HG-g~~~~~~~~~-----~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~ 641 (789)
|.+..+....-+++.+..+. ....|+.++|-| ||.+ ..| ....+...+.|-.|+..++|= ||++..-
T Consensus 63 F~~~~~~~~Qq~~y~n~~~~-~~~gPiFLmIGGEgp~~---~~wv~~~~~~~~~~AkkfgA~v~~lEHRF---YG~S~P~ 135 (514)
T KOG2182|consen 63 FDSSNGKFFQQRFYNNNQWA-KPGGPIFLMIGGEGPES---DKWVGNENLTWLQWAKKFGATVFQLEHRF---YGQSSPI 135 (514)
T ss_pred hhcchhhhhhhheeeccccc-cCCCceEEEEcCCCCCC---CCccccCcchHHHHHHHhCCeeEEeeeec---cccCCCC
Confidence 33334444445556555432 456788888866 3332 222 123444557899999999995 4543211
Q ss_pred ------cCCCCCCcccHHHHHHHHHHHHHcC-CCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 642 ------SLPGKVGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 642 ------~~~~~~~~~~~~D~~~~i~~l~~~~-~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
.+.-.--.+.++|++..|+.+-.+- .-|..+.+.+|.||-|.+++|+-.++|+++.++|+.++..
T Consensus 136 ~~~st~nlk~LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 136 GDLSTSNLKYLSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred CCCcccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccce
Confidence 1111112334678888888876653 4455699999999999999999999999999888877543
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.26 Score=50.47 Aligned_cols=224 Identities=10% Similarity=0.127 Sum_probs=132.2
Q ss_pred cccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCC
Q 003886 122 ANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQT 199 (789)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~ 199 (789)
.+...+.+-++++.++ +. .+|-.+. ...+..+++|+---+|.-..++. ....|+ ..+..+..+. .
T Consensus 168 tgs~DrtikIwDlatg--~L-kltltGh---i~~vr~vavS~rHpYlFs~gedk-----~VKCwDLe~nkvIR~YhG--H 234 (460)
T KOG0285|consen 168 TGSADRTIKIWDLATG--QL-KLTLTGH---IETVRGVAVSKRHPYLFSAGEDK-----QVKCWDLEYNKVIRHYHG--H 234 (460)
T ss_pred ecCCCceeEEEEcccC--eE-EEeecch---hheeeeeeecccCceEEEecCCC-----eeEEEechhhhhHHHhcc--c
Confidence 3445566777777443 11 2222211 13467788998888875554433 556673 3333332221 1
Q ss_pred ccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEE
Q 003886 200 VHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVIN 279 (789)
Q Consensus 200 ~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d 279 (789)
. ..| .++...|--+.|+..+.+...+ .|+...+........+..-+.+..+.+--+..+++..+..|.+||
T Consensus 235 l-S~V------~~L~lhPTldvl~t~grDst~R--vWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWD 305 (460)
T KOG0285|consen 235 L-SGV------YCLDLHPTLDVLVTGGRDSTIR--VWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWD 305 (460)
T ss_pred c-cee------EEEeccccceeEEecCCcceEE--EeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEee
Confidence 1 112 5778888877777766665544 455444544445555555555555655446667777889999999
Q ss_pred ccCCceE-eccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCC
Q 003886 280 INSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESS 358 (789)
Q Consensus 280 ~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 358 (789)
+..|+.. .+ +.....+...+..|.... |.+... ..|-.++++
T Consensus 306 l~agkt~~tl--t~hkksvral~lhP~e~~------fASas~--------------dnik~w~~p--------------- 348 (460)
T KOG0285|consen 306 LRAGKTMITL--THHKKSVRALCLHPKENL------FASASP--------------DNIKQWKLP--------------- 348 (460)
T ss_pred eccCceeEee--ecccceeeEEecCCchhh------hhccCC--------------ccceeccCC---------------
Confidence 9887654 44 566667788888887654 333211 246666764
Q ss_pred CCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCC
Q 003886 359 SEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (789)
Q Consensus 359 ~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~ 417 (789)
++.-+.+|..+...+...+...||- ++... +...|+.|||.++-.-
T Consensus 349 -~g~f~~nlsgh~~iintl~~nsD~v--~~~G~----------dng~~~fwdwksg~ny 394 (460)
T KOG0285|consen 349 -EGEFLQNLSGHNAIINTLSVNSDGV--LVSGG----------DNGSIMFWDWKSGHNY 394 (460)
T ss_pred -ccchhhccccccceeeeeeeccCce--EEEcC----------CceEEEEEecCcCccc
Confidence 4455566776666666667777763 23332 2346999999886553
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.63 E-value=1.8 Score=43.43 Aligned_cols=182 Identities=21% Similarity=0.184 Sum_probs=89.0
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
...|+.+|..+|+...-...+...... + ..++.. |++.. ....|+.+|+
T Consensus 45 ~~~l~~~d~~tG~~~W~~~~~~~~~~~-~--~~~~~~----v~v~~---------------~~~~l~~~d~--------- 93 (238)
T PF13360_consen 45 DGNLYALDAKTGKVLWRFDLPGPISGA-P--VVDGGR----VYVGT---------------SDGSLYALDA--------- 93 (238)
T ss_dssp TSEEEEEETTTSEEEEEEECSSCGGSG-E--EEETTE----EEEEE---------------TTSEEEEEET---------
T ss_pred CCEEEEEECCCCCEEEEeeccccccce-e--eecccc----ccccc---------------ceeeeEeccc---------
Confidence 368999999999876542122222111 2 334444 55544 1226999997
Q ss_pred hhhhcCCCCCCCeeec---CCC--CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeE
Q 003886 352 LELKESSSEDLPVVNL---TES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (789)
Q Consensus 352 ~~~~~~~~~~~~~~~L---t~~--~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v 426 (789)
.+|+...- ... ......+....+|+.+++.... ..|+.+|..+|...-.
T Consensus 94 --------~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g~l~~~d~~tG~~~w~------- 147 (238)
T PF13360_consen 94 --------KTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS-----------GKLVALDPKTGKLLWK------- 147 (238)
T ss_dssp --------TTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC-----------SEEEEEETTTTEEEEE-------
T ss_pred --------CCcceeeeeccccccccccccccCceEecCEEEEEecc-----------CcEEEEecCCCcEEEE-------
Confidence 55554322 111 1112333444457777666643 2589999887765210
Q ss_pred EeeeeccCC-CCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEE
Q 003886 427 IPVVQCAEG-DCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAV 505 (789)
Q Consensus 427 ~~~~~~~~~-~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~ 505 (789)
.++ ..+.. ..+. ........+.+ .++ .+++.. ..+. ++.+|+.+|+... ...... .......+++.+++.
T Consensus 148 ~~~-~~~~~~~~~~-~~~~~~~~~~~-~~~-~v~~~~-~~g~--~~~~d~~tg~~~w-~~~~~~-~~~~~~~~~~~l~~~ 218 (238)
T PF13360_consen 148 YPV-GEPRGSSPIS-SFSDINGSPVI-SDG-RVYVSS-GDGR--VVAVDLATGEKLW-SKPISG-IYSLPSVDGGTLYVT 218 (238)
T ss_dssp EES-STT-SS--EE-EETTEEEEEEC-CTT-EEEEEC-CTSS--EEEEETTTTEEEE-EECSS--ECECEECCCTEEEEE
T ss_pred eec-CCCCCCccee-eecccccceEE-ECC-EEEEEc-CCCe--EEEEECCCCCEEE-EecCCC-ccCCceeeCCEEEEE
Confidence 000 00000 0000 00000011122 244 565543 3333 6777999998553 222221 222356677777666
Q ss_pred EeCCCCCCeEEEEeeccc
Q 003886 506 SSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 506 ~ss~~~p~~i~~~~~~~~ 523 (789)
. .. ..++.+|+.++
T Consensus 219 ~-~~---~~l~~~d~~tG 232 (238)
T PF13360_consen 219 S-SD---GRLYALDLKTG 232 (238)
T ss_dssp E-TT---TEEEEEETTTT
T ss_pred e-CC---CEEEEEECCCC
Confidence 6 32 56888898765
|
... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.65 Score=55.27 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=39.2
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~ 229 (789)
+....+--|+..|.++...+ .++.++ ......-+..+..++ ...+||||++.++++....
T Consensus 71 i~s~~fl~d~~~i~v~~~~G----~iilvd~et~~~eivg~vd~GI----------~aaswS~Dee~l~liT~~~ 131 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVITALG----DIILVDPETLELEIVGNVDNGI----------SAASWSPDEELLALITGRQ 131 (1265)
T ss_pred eEEEEEecccceEEEEecCC----cEEEEcccccceeeeeeccCce----------EEEeecCCCcEEEEEeCCc
Confidence 55666777777777765544 355554 333333333444454 7999999999999987654
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.54 E-value=2.1 Score=43.40 Aligned_cols=88 Identities=8% Similarity=0.010 Sum_probs=48.3
Q ss_pred ccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCC-CCcccceeeEEeeeeccCCCCCccccccCCCCCcc
Q 003886 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 451 (789)
Q Consensus 373 ~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~-~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~w 451 (789)
.....+|+|..+.|.+...+.. ..||.++...... ......... -..++...++.+.+
T Consensus 182 GfEGlA~d~~~~~l~~aKEr~P---------~~I~~~~~~~~~l~~~~~~~~~~------------~~~~f~~DvSgl~~ 240 (316)
T COG3204 182 GFEGLAWDPVDHRLFVAKERNP---------IGIFEVTQSPSSLSVHASLDPTA------------DRDLFVLDVSGLEF 240 (316)
T ss_pred CceeeecCCCCceEEEEEccCC---------cEEEEEecCCcccccccccCccc------------ccceEeecccccee
Confidence 4678999999999988887753 3577776322111 011111111 11123345567777
Q ss_pred ccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003886 452 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (789)
Q Consensus 452 s~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~l 483 (789)
.+....+++.+... ..|..+|+++.-+..+
T Consensus 241 ~~~~~~LLVLS~ES--r~l~Evd~~G~~~~~l 270 (316)
T COG3204 241 NAITNSLLVLSDES--RRLLEVDLSGEVIELL 270 (316)
T ss_pred cCCCCcEEEEecCC--ceEEEEecCCCeeeeE
Confidence 76666676665433 3566777744434333
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.53 E-value=2.7 Score=42.65 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=34.5
Q ss_pred CCCCccccCCCEEEEEEEeCCeEEEEEEECCCC-cEEEecCCCCCceeEEeeecCCEEEEEEe
Q 003886 446 ILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSG-ELLRITPAESNFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg-~~~~lt~~~~~~~~~~~s~dg~~l~~~~s 507 (789)
+..+.|+|=-+++ +++..+|-..+| |+.+. ++.++..-...++..+|+.+|..|+...+
T Consensus 235 VNai~Fhp~~~tf-aTgGsDG~V~~W--d~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 235 VNAIAFHPIHGTF-ATGGSDGIVNIW--DLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eceeEeccccceE-EecCCCceEEEc--cCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 3466777764433 444444544444 65443 34455554455666788999988776654
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.52 E-value=2 Score=43.13 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=66.6
Q ss_pred cCceEEEEEccCCceEeccCCCC-CCccceEEEeeCCCCCccEEEEEeecCCc-eeeeeeeeccCC-cceEEEecccccc
Q 003886 271 RQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSET-RKLGIKYCYNRP-CALYAVRVSLYKS 347 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~-~~~~~~~~wSPDg~~~~~~l~f~~~~~~~-~~~g~~~~~~~~-~~l~~~d~~~~~~ 347 (789)
+..+|.+.|+.+|..... ..+ ...+-.+.|||..++ +++++.-++. +-+.+ .|. ..+..+|..
T Consensus 166 r~~~VrLCDi~SGs~sH~--LsGHr~~vlaV~Wsp~~e~----vLatgsaDg~irlWDi----Rrasgcf~~lD~h---- 231 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHT--LSGHRDGVLAVEWSPSSEW----VLATGSADGAIRLWDI----RRASGCFRVLDQH---- 231 (397)
T ss_pred CCCcEEEEeccCCcceee--eccccCceEEEEeccCcee----EEEecCCCceEEEEEe----ecccceeEEeecc----
Confidence 447889999999987655 333 336778999999998 8887743221 11111 011 123334431
Q ss_pred hhhhhhhhcCCCCCCCeee---cCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCC
Q 003886 348 EASELELKESSSEDLPVVN---LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~---Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~ 417 (789)
++..... =+.+.+.+...+|+.||.+++....++ ++.+|+...|...
T Consensus 232 ------------n~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~-----------r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 232 ------------NTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD-----------RIRVWNMESGRNT 281 (397)
T ss_pred ------------cCccCccccccccccceeeeeeecccchhhhhccCcc-----------ceEEeecccCccc
Confidence 2222111 233456688899999999988766443 5788887766543
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.52 E-value=1.7 Score=44.11 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=42.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEE
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLI 222 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~l 222 (789)
.++++..|+||-+.|..+.+ ...++.++...|+..+.+.+.. .|+ .+.+.|.-+|+.+
T Consensus 86 ~nvS~LTynp~~rtLFav~n---~p~~iVElt~~GdlirtiPL~g-~~D-------pE~Ieyig~n~fv 143 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTN---KPAAIVELTKEGDLIRTIPLTG-FSD-------PETIEYIGGNQFV 143 (316)
T ss_pred ccccceeeCCCcceEEEecC---CCceEEEEecCCceEEEecccc-cCC-------hhHeEEecCCEEE
Confidence 45889999999999876654 3467888888888888887754 221 2578888877643
|
|
| >KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.042 Score=62.10 Aligned_cols=70 Identities=21% Similarity=0.406 Sum_probs=43.3
Q ss_pred CcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHc--C--CCC---CccEEEEEcCccHHHHHHHHHhCC
Q 003886 621 GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM--G--LAN---PSKVTVVGGSHGGFLTTHLIGQAP 693 (789)
Q Consensus 621 Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~--~--~~d---~~rv~l~G~S~GG~~a~~~~~~~p 693 (789)
.|..+++|+- +++ .+..|..-....+-+.+||+++++. + ..+ +..|+++||||||++|..++.. |
T Consensus 132 ~~DFFaVDFn------Ee~-tAm~G~~l~dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tl-k 203 (973)
T KOG3724|consen 132 SFDFFAVDFN------EEF-TAMHGHILLDQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTL-K 203 (973)
T ss_pred ccceEEEccc------chh-hhhccHhHHHHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhh-h
Confidence 3566777753 222 1223333233355677788887763 2 334 6779999999999999988874 4
Q ss_pred CceeE
Q 003886 694 DKFVA 698 (789)
Q Consensus 694 ~~~~a 698 (789)
...++
T Consensus 204 n~~~~ 208 (973)
T KOG3724|consen 204 NEVQG 208 (973)
T ss_pred hhccc
Confidence 33333
|
|
| >COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.065 Score=54.27 Aligned_cols=100 Identities=14% Similarity=0.158 Sum_probs=64.2
Q ss_pred cEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHH-HHHHHHcCCCCCc
Q 003886 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLANPS 671 (789)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d~~ 671 (789)
|.++++|++.+. ...|.....+|... ..|+..+.+|-.+... ...+++|..+. ++.+.+. -...
T Consensus 1 ~pLF~fhp~~G~--~~~~~~L~~~l~~~-~~v~~l~a~g~~~~~~----------~~~~l~~~a~~yv~~Ir~~--QP~G 65 (257)
T COG3319 1 PPLFCFHPAGGS--VLAYAPLAAALGPL-LPVYGLQAPGYGAGEQ----------PFASLDDMAAAYVAAIRRV--QPEG 65 (257)
T ss_pred CCEEEEcCCCCc--HHHHHHHHHHhccC-ceeeccccCccccccc----------ccCCHHHHHHHHHHHHHHh--CCCC
Confidence 568889996663 55676666777666 8899999887332111 12335555543 3333332 2356
Q ss_pred cEEEEEcCccHHHHHHHHHhC---CCceeEEEEeCCccc
Q 003886 672 KVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCN 707 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~---p~~~~a~v~~~pv~~ 707 (789)
.+.+.|||+||+++.-+|.+- -+-+..+++..++..
T Consensus 66 Py~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 66 PYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred CEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 799999999999999888752 234566666655554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.15 Score=56.11 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=39.2
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeec
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~ 228 (789)
+...+|-|||..|+...... ++..+ .+|...+.+. +..+-| ..++||.||++.|..+.+
T Consensus 15 i~d~afkPDGsqL~lAAg~r-----lliyD~ndG~llqtLK---gHKDtV------ycVAys~dGkrFASG~aD 74 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAGSR-----LLVYDTSDGTLLQPLK---GHKDTV------YCVAYAKDGKRFASGSAD 74 (1081)
T ss_pred hheeEECCCCceEEEecCCE-----EEEEeCCCcccccccc---cccceE------EEEEEccCCceeccCCCc
Confidence 67889999999998875543 66655 4444333222 222223 789999999998875444
|
|
| >KOG3975 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.4 Score=47.11 Aligned_cols=117 Identities=15% Similarity=0.223 Sum_probs=62.9
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHH-CC--cEEEEEcCCCCCCCCchhhccCCCC-C
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VG--YSLLIVNYRGSLGFGEEALQSLPGK-V 647 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~-~G--y~V~~~d~rGs~G~G~~~~~~~~~~-~ 647 (789)
.|.+.+-..+.|.-.+.+...|+|+++.|.|+. ...|..+...|.. .+ ..+..+-.-|..+.-.+.++..... -
T Consensus 9 ~gl~~si~~~~~~v~~~~~~~~li~~IpGNPG~--~gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~ 86 (301)
T KOG3975|consen 9 SGLPTSILTLKPWVTKSGEDKPLIVWIPGNPGL--LGFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNE 86 (301)
T ss_pred cCCcccceeeeeeeccCCCCceEEEEecCCCCc--hhHHHHHHHHHHHhcccccceeEEeccccccCCcccccccccccc
Confidence 444455555555433456788999999998884 3334444444432 22 2344444433322221111111111 1
Q ss_pred CcccHHHHHH-HHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHh
Q 003886 648 GSQDVNDVLT-AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 691 (789)
Q Consensus 648 ~~~~~~D~~~-~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~ 691 (789)
.....+|+.+ -++++.+. .-...||.++|||-|+|+++.++-.
T Consensus 87 eifsL~~QV~HKlaFik~~-~Pk~~ki~iiGHSiGaYm~Lqil~~ 130 (301)
T KOG3975|consen 87 EIFSLQDQVDHKLAFIKEY-VPKDRKIYIIGHSIGAYMVLQILPS 130 (301)
T ss_pred cccchhhHHHHHHHHHHHh-CCCCCEEEEEecchhHHHHHHHhhh
Confidence 1122444443 45555553 2345789999999999999999874
|
|
| >PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.023 Score=56.55 Aligned_cols=50 Identities=20% Similarity=0.262 Sum_probs=35.1
Q ss_pred HHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC----CCceeEEEEeCC
Q 003886 655 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA----PDKFVAAAARNP 704 (789)
Q Consensus 655 ~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~----p~~~~a~v~~~p 704 (789)
...|++|+.+...-.+.+|.+.|||.||++|..++... .+++..+...++
T Consensus 68 q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDg 121 (224)
T PF11187_consen 68 QKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDG 121 (224)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeC
Confidence 35566666553111234699999999999999999873 347788877665
|
|
| >PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.072 Score=56.76 Aligned_cols=120 Identities=15% Similarity=0.110 Sum_probs=79.3
Q ss_pred cCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeC-CccchhhhhcC---CCCCcchh-hhhccCccccccCCCCC
Q 003886 665 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN-PLCNLALMVGT---TDIPDWCY-VESYGSKGKDSFTESPS 739 (789)
Q Consensus 665 ~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~-pv~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~ 739 (789)
...++.++.+|.|+|-=|..+..+++ ..+|++|++... ++.++...+.. .-...|.+ ...|...++-...+.
T Consensus 166 ~~~~~i~~FvV~GaSKRGWTtWltaa-~D~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~l~t-- 242 (367)
T PF10142_consen 166 KFGVNIEKFVVTGASKRGWTTWLTAA-VDPRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAFQDYYNEGITQQLDT-- 242 (367)
T ss_pred hcCCCccEEEEeCCchHhHHHHHhhc-cCcceeEEeeEEEccCCcHHHHHHHHHHhCCCCccchhhhhHhCchhhcCC--
Confidence 34578899999999999999998888 456888887653 44444322110 00001110 001111112222222
Q ss_pred hhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 740 VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 740 ~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.+..+...-.+|+.+.++++.|-|||.|..|+...+..+.-+++.|+.
T Consensus 243 p~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~G 290 (367)
T PF10142_consen 243 PEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFVPDSSNFYYDKLPG 290 (367)
T ss_pred HHHHHHHHhcCHHHHHHhcCccEEEEecCCCceeccCchHHHHhhCCC
Confidence 244455566799999999999999999999999999999999999874
|
Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily. |
| >COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.073 Score=56.88 Aligned_cols=99 Identities=17% Similarity=0.235 Sum_probs=66.2
Q ss_pred EEEEEcCCCCCCCchhhHHHHHHHHHCCcE---EEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYS---LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~---V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
.+|++||... ....|......++..|+. +..+++.+..+.+ ......+.+.+-++.+... ...
T Consensus 61 pivlVhG~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~ql~~~V~~~l~~--~ga 126 (336)
T COG1075 61 PIVLVHGLGG--GYGNFLPLDYRLAILGWLTNGVYAFELSGGDGTY----------SLAVRGEQLFAYVDEVLAK--TGA 126 (336)
T ss_pred eEEEEccCcC--CcchhhhhhhhhcchHHHhcccccccccccCCCc----------cccccHHHHHHHHHHHHhh--cCC
Confidence 5678899632 344555555557777777 8888886531111 1122245555666665554 235
Q ss_pred ccEEEEEcCccHHHHHHHHHhCC--CceeEEEEeCCcc
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAP--DKFVAAAARNPLC 706 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p--~~~~a~v~~~pv~ 706 (789)
+++.++|||+||..+..++...+ .+++.++..++.-
T Consensus 127 ~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp~ 164 (336)
T COG1075 127 KKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTPH 164 (336)
T ss_pred CceEEEeecccchhhHHHHhhcCccceEEEEEEeccCC
Confidence 88999999999999999988877 6888888877644
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.01 E-value=2.1 Score=46.92 Aligned_cols=114 Identities=10% Similarity=-0.034 Sum_probs=65.6
Q ss_pred CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCC--
Q 003886 295 LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS-- 372 (789)
Q Consensus 295 ~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~-- 372 (789)
..+..+.|+-||-. ++..+ ....+|++|+ .+.++..+..+.+
T Consensus 229 ~svTal~F~d~gL~----~aVGt---------------s~G~v~iyDL-----------------Ra~~pl~~kdh~~e~ 272 (703)
T KOG2321|consen 229 PSVTALKFRDDGLH----VAVGT---------------STGSVLIYDL-----------------RASKPLLVKDHGYEL 272 (703)
T ss_pred CcceEEEecCCcee----EEeec---------------cCCcEEEEEc-----------------ccCCceeecccCCcc
Confidence 35778899999877 66544 3347999998 4444444444332
Q ss_pred ccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccc
Q 003886 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 452 (789)
Q Consensus 373 ~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws 452 (789)
.+-...|-+.+.+=..++++. .-|.+||-.+|....... +...+..+++-
T Consensus 273 pi~~l~~~~~~~q~~v~S~Dk----------~~~kiWd~~~Gk~~asiE--------------------pt~~lND~C~~ 322 (703)
T KOG2321|consen 273 PIKKLDWQDTDQQNKVVSMDK----------RILKIWDECTGKPMASIE--------------------PTSDLNDFCFV 322 (703)
T ss_pred ceeeecccccCCCceEEecch----------HHhhhcccccCCceeecc--------------------ccCCcCceeee
Confidence 244455544433323334433 236778877765421110 11134566778
Q ss_pred cCCCEEEEEEEeCCeEEEEEEEC
Q 003886 453 SDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 453 ~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
|++. ++|++...+....|.+..
T Consensus 323 p~sG-m~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 323 PGSG-MFFTANESSKMHTYYIPS 344 (703)
T ss_pred cCCc-eEEEecCCCcceeEEccc
Confidence 8876 778888777776666653
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.86 Score=47.26 Aligned_cols=160 Identities=13% Similarity=0.141 Sum_probs=92.9
Q ss_pred ceeeC-CcccccCCccCceEEEEEccCCceEecc-C-CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccC
Q 003886 257 GDWEE-DWGETYAGKRQPSLFVININSGEVQAVK-G-IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 333 (789)
Q Consensus 257 ~~~~~-d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~-~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~ 333 (789)
..|++ .-|..+++.....|++|...+|....=. + +....++....|||..+. +++.+.-
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~----vfaScS~-------------- 278 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG----VFASCSC-------------- 278 (440)
T ss_pred eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc----eEEeeec--------------
Confidence 34554 1245666777788999998887643211 0 223457889999999998 6665521
Q ss_pred CcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 334 PCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 334 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
+..|.++|++..+ ...+.....+.+.+.-.+|+-+-..||+-..+ ..+.+||+..
T Consensus 279 DgsIrIWDiRs~~--------------~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd-----------Gt~~iwDLR~ 333 (440)
T KOG0302|consen 279 DGSIRIWDIRSGP--------------KKAAVSTKAHNSDVNVISWNRREPLLASGGDD-----------GTLSIWDLRQ 333 (440)
T ss_pred CceEEEEEecCCC--------------ccceeEeeccCCceeeEEccCCcceeeecCCC-----------ceEEEEEhhh
Confidence 2256677763210 11222224455677788998877756554433 2488888854
Q ss_pred CCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003886 414 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 414 ~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
=.. + ..+..+.. +...+..+.|+|....++..+..+....||-+.+
T Consensus 334 ~~~-----~--~pVA~fk~---------Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 334 FKS-----G--QPVATFKY---------HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ccC-----C--CcceeEEe---------ccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 211 1 01111110 1123567889997777777766666677776554
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.56 Score=51.44 Aligned_cols=184 Identities=15% Similarity=0.147 Sum_probs=96.3
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc--h-
Q 003886 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS--E- 348 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~--~- 348 (789)
...|.+|.+.||...+. +.-+..+..++|.|.++.. |+.++.... +++++...+.. .
T Consensus 421 DGtvriWEi~TgRcvr~--~~~d~~I~~vaw~P~~~~~---vLAvA~~~~---------------~~ivnp~~G~~~e~~ 480 (733)
T KOG0650|consen 421 DGTVRIWEIATGRCVRT--VQFDSEIRSVAWNPLSDLC---VLAVAVGEC---------------VLIVNPIFGDRLEVG 480 (733)
T ss_pred CCcEEEEEeecceEEEE--EeecceeEEEEecCCCCce---eEEEEecCc---------------eEEeCccccchhhhc
Confidence 46788899999865444 3445577899999999862 555553221 33333211100 0
Q ss_pred -hhhhhhhc-------C-----------CCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEe
Q 003886 349 -ASELELKE-------S-----------SSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 409 (789)
Q Consensus 349 -~~~~~~~~-------~-----------~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~ 409 (789)
...++... + ....+ ++....+...+.+..|.-+|.+|+.+...+ +..++++.
T Consensus 481 ~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~-v~~~I~~~k~i~~vtWHrkGDYlatV~~~~--------~~~~VliH 551 (733)
T KOG0650|consen 481 PTKELLASAPNESEPDAAVVTWSRASLDELEKG-VCIVIKHPKSIRQVTWHRKGDYLATVMPDS--------GNKSVLIH 551 (733)
T ss_pred chhhhhhcCCCccCCcccceeechhhhhhhccc-eEEEEecCCccceeeeecCCceEEEeccCC--------CcceEEEE
Confidence 00000000 0 00111 122223344688899999999999888664 34568888
Q ss_pred ecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE-ecCCCC
Q 003886 410 DWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR-ITPAES 488 (789)
Q Consensus 410 d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~ 488 (789)
++...... ...... . ..+....|.|-..++++.+ ...+-.+|+..+++.. +..+--
T Consensus 552 QLSK~~sQ-~PF~ks--------------k----G~vq~v~FHPs~p~lfVaT----q~~vRiYdL~kqelvKkL~tg~k 608 (733)
T KOG0650|consen 552 QLSKRKSQ-SPFRKS--------------K----GLVQRVKFHPSKPYLFVAT----QRSVRIYDLSKQELVKKLLTGSK 608 (733)
T ss_pred eccccccc-Cchhhc--------------C----CceeEEEecCCCceEEEEe----ccceEEEehhHHHHHHHHhcCCe
Confidence 87543321 110000 0 0123445777777776654 2335556775554432 222222
Q ss_pred CceeEEeeecCCEEEEEEe
Q 003886 489 NFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 489 ~~~~~~~s~dg~~l~~~~s 507 (789)
.++..++++.|+.|+...-
T Consensus 609 wiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 609 WISSMSIHPNGDNLILGSY 627 (733)
T ss_pred eeeeeeecCCCCeEEEecC
Confidence 3455567778888766543
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.92 E-value=4.3 Score=41.41 Aligned_cols=82 Identities=18% Similarity=0.183 Sum_probs=47.7
Q ss_pred ceEEEEEccCCce-EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 273 PSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 273 ~~l~v~d~~~g~~-~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
.+|.+|+...=+. ..++ +....+..++..|.|| |+..-. ++..|..+|+-.+
T Consensus 107 G~i~iw~~~~W~~~~slK--~H~~~Vt~lsiHPS~K-----LALsVg--------------~D~~lr~WNLV~G------ 159 (362)
T KOG0294|consen 107 GHIIIWRVGSWELLKSLK--AHKGQVTDLSIHPSGK-----LALSVG--------------GDQVLRTWNLVRG------ 159 (362)
T ss_pred CcEEEEEcCCeEEeeeec--ccccccceeEecCCCc-----eEEEEc--------------CCceeeeehhhcC------
Confidence 5677787654322 2232 2233588999999999 454331 2335777777210
Q ss_pred hhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 352 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
..+.+.+|.. ......|+|.|.+++....+
T Consensus 160 --------r~a~v~~L~~---~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 160 --------RVAFVLNLKN---KATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred --------ccceeeccCC---cceeeEEcCCCCEEEEEecc
Confidence 2223344432 34569999999988766644
|
|
| >PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.074 Score=53.01 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=18.6
Q ss_pred CccEEEEEcCccHHHHHHHHHh
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQ 691 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~ 691 (789)
..+|.++|||+||.++-.++..
T Consensus 77 ~~~IsfIgHSLGGli~r~al~~ 98 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALGL 98 (217)
T ss_pred cccceEEEecccHHHHHHHHHH
Confidence 3689999999999999877763
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.87 E-value=1.1 Score=47.80 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=38.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
..+...+.||||++||+.. ..+.+.|| .+.+..+.+. +..+.| .++.|--.-..|+..+.+..
T Consensus 203 keil~~avS~Dgkylatgg-----~d~~v~Iw~~~t~ehv~~~~---ghr~~V------~~L~fr~gt~~lys~s~Drs 267 (479)
T KOG0299|consen 203 KEILTLAVSSDGKYLATGG-----RDRHVQIWDCDTLEHVKVFK---GHRGAV------SSLAFRKGTSELYSASADRS 267 (479)
T ss_pred ceeEEEEEcCCCcEEEecC-----CCceEEEecCcccchhhccc---ccccce------eeeeeecCccceeeeecCCc
Confidence 3477899999999999853 33577888 3444444422 333444 55665554445555555543
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.73 Score=52.95 Aligned_cols=206 Identities=10% Similarity=0.004 Sum_probs=125.1
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
.+++|.|..-+|+..-.....+ .|+-........+.++...+....|.+.----.++..+..|-||+-.+.+..--
T Consensus 13 KglsFHP~rPwILtslHsG~IQ--lWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft-- 88 (1202)
T KOG0292|consen 13 KGLSFHPKRPWILTSLHSGVIQ--LWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT-- 88 (1202)
T ss_pred cceecCCCCCEEEEeecCceee--eehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh--
Confidence 6899999999998776555444 343222223333444444444444554421112333457788998876654321
Q ss_pred CCCC-CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCC
Q 003886 291 IPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 369 (789)
Q Consensus 291 ~~~~-~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~ 369 (789)
.-++ ..+..+.|.+.=.| |+..++ +..|.+++-. ....+..||+
T Consensus 89 L~GHlDYVRt~~FHheyPW----IlSASD---------------DQTIrIWNwq----------------sr~~iavltG 133 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFFHHEYPW----ILSASD---------------DQTIRIWNWQ----------------SRKCIAVLTG 133 (1202)
T ss_pred hccccceeEEeeccCCCce----EEEccC---------------CCeEEEEecc----------------CCceEEEEec
Confidence 2233 36778889888777 877763 2356677751 3344568899
Q ss_pred CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccc-e-----------------eeEEeeee
Q 003886 370 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK-I-----------------VDVIPVVQ 431 (789)
Q Consensus 370 ~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~-~-----------------~~v~~~~~ 431 (789)
+...+-..+|.|--..|+..|-+. .+.+||..+-.++....+ . +.++..+
T Consensus 134 HnHYVMcAqFhptEDlIVSaSLDQ-----------TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V- 201 (1202)
T KOG0292|consen 134 HNHYVMCAQFHPTEDLIVSASLDQ-----------TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV- 201 (1202)
T ss_pred CceEEEeeccCCccceEEEecccc-----------eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee-
Confidence 999888999999878888777654 488899865443333222 0 1111111
Q ss_pred ccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003886 432 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
..| +++++...+|.|--- |++++.++....||+++-
T Consensus 202 ------LEG-HDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmne 237 (1202)
T KOG0292|consen 202 ------LEG-HDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNE 237 (1202)
T ss_pred ------ecc-cccccceEEecCCcc-eEEecCCcceeeEEEecc
Confidence 111 345566667777654 778887777889999984
|
|
| >PRK10252 entF enterobactin synthase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.17 Score=65.26 Aligned_cols=100 Identities=12% Similarity=0.120 Sum_probs=65.3
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.|.++++||.+++ ...|......|. .++.|+.++.+|. +... .....++++.+.+...+... ....
T Consensus 1068 ~~~l~~lh~~~g~--~~~~~~l~~~l~-~~~~v~~~~~~g~---~~~~-------~~~~~l~~la~~~~~~i~~~-~~~~ 1133 (1296)
T PRK10252 1068 GPTLFCFHPASGF--AWQFSVLSRYLD-PQWSIYGIQSPRP---DGPM-------QTATSLDEVCEAHLATLLEQ-QPHG 1133 (1296)
T ss_pred CCCeEEecCCCCc--hHHHHHHHHhcC-CCCcEEEEECCCC---CCCC-------CCCCCHHHHHHHHHHHHHhh-CCCC
Confidence 3668899997764 446666666663 4699999998873 3211 01224555555444333321 1235
Q ss_pred cEEEEEcCccHHHHHHHHHh---CCCceeEEEEeCCc
Q 003886 672 KVTVVGGSHGGFLTTHLIGQ---APDKFVAAAARNPL 705 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~---~p~~~~a~v~~~pv 705 (789)
++.++|||+||.++..++.+ .++++..+++..+.
T Consensus 1134 p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~~ 1170 (1296)
T PRK10252 1134 PYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDTW 1170 (1296)
T ss_pred CEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecCC
Confidence 79999999999999999885 46788888877653
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.28 Score=54.16 Aligned_cols=129 Identities=16% Similarity=0.205 Sum_probs=58.7
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~ 235 (789)
....++||+|+.++...+++ |.+......+..... .+ ..+.|+++++ .|...... ....
T Consensus 35 p~~ls~npngr~v~V~g~ge------Y~iyt~~~~r~k~~G-~g-----------~~~vw~~~n~-yAv~~~~~--~I~I 93 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCGDGE------YEIYTALAWRNKAFG-SG-----------LSFVWSSRNR-YAVLESSS--TIKI 93 (443)
T ss_dssp -SEEEE-TTSSEEEEEETTE------EEEEETTTTEEEEEE-E------------SEEEE-TSSE-EEEE-TTS---EEE
T ss_pred CeeEEECCCCCEEEEEcCCE------EEEEEccCCcccccC-ce-----------eEEEEecCcc-EEEEECCC--eEEE
Confidence 56788999999999854443 666642222222221 12 4688999666 33332111 1111
Q ss_pred ccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEE
Q 003886 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 315 (789)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f 315 (789)
+........+.. .........|. |..+.-.....|..+|.++++..+- +.-. .+..+.||+||+. +++
T Consensus 94 ~kn~~~~~~k~i--~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~--i~v~-~vk~V~Ws~~g~~----val 161 (443)
T PF04053_consen 94 YKNFKNEVVKSI--KLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRR--IDVS-AVKYVIWSDDGEL----VAL 161 (443)
T ss_dssp EETTEE-TT-------SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEE--ESS--E-EEEEE-TTSSE----EEE
T ss_pred EEcCccccceEE--cCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeE--EecC-CCcEEEEECCCCE----EEE
Confidence 110000000000 00111122333 4444444455699999998875443 1211 2579999999998 888
Q ss_pred Ee
Q 003886 316 VG 317 (789)
Q Consensus 316 ~~ 317 (789)
++
T Consensus 162 ~t 163 (443)
T PF04053_consen 162 VT 163 (443)
T ss_dssp E-
T ss_pred Ee
Confidence 87
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.63 Score=49.39 Aligned_cols=173 Identities=13% Similarity=0.072 Sum_probs=98.9
Q ss_pred cCceEEEEEccCCc---eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc
Q 003886 271 RQPSLFVININSGE---VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (789)
Q Consensus 271 ~~~~l~v~d~~~g~---~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (789)
+..+|-+||+.+.+ ......++....++...|+|.... -++.+. -+..|...|+
T Consensus 208 K~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s----~i~ssS--------------yDGtiR~~D~----- 264 (498)
T KOG4328|consen 208 KGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTS----QIYSSS--------------YDGTIRLQDF----- 264 (498)
T ss_pred CCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChh----heeeec--------------cCceeeeeee-----
Confidence 34678888885322 222223566678889999997765 444431 1236778887
Q ss_pred hhhhhhhhcCCCCCCCeee-cCC--CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCC--Ccccc
Q 003886 348 EASELELKESSSEDLPVVN-LTE--SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF--SSLEK 422 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~-Lt~--~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~--~~t~~ 422 (789)
+++..+. ++. .........|+.+..-++|..+-+ .+.++|+.+++.. .+...
T Consensus 265 ------------~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-----------~f~~iD~R~~~s~~~~~~lh 321 (498)
T KOG4328|consen 265 ------------EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-----------NFNVIDLRTDGSEYENLRLH 321 (498)
T ss_pred ------------cchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-----------ceEEEEeecCCccchhhhhh
Confidence 4443322 222 334466677888877777766432 4777887776542 11111
Q ss_pred eeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE-Ee-cCCC-CCceeEEeeecC
Q 003886 423 IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL-RI-TPAE-SNFSWSLLTLDG 499 (789)
Q Consensus 423 ~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~-~l-t~~~-~~~~~~~~s~dg 499 (789)
. .-+..+.+.|--.+++.++..+....||-+.--.++.. .| +-.+ -.+....|||++
T Consensus 322 ~--------------------kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 322 K--------------------KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG 381 (498)
T ss_pred h--------------------cccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence 1 12334556666667777777777777885543233332 12 1112 134456799999
Q ss_pred CEEEEEEeCC
Q 003886 500 DNIIAVSSSP 509 (789)
Q Consensus 500 ~~l~~~~ss~ 509 (789)
..|+.++.+.
T Consensus 382 gtl~TT~~D~ 391 (498)
T KOG4328|consen 382 GTLLTTCQDN 391 (498)
T ss_pred CceEeeccCC
Confidence 8877776543
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.47 E-value=1.7 Score=45.27 Aligned_cols=117 Identities=16% Similarity=0.192 Sum_probs=73.9
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceE-ecc
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVK 289 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~-~l~ 289 (789)
.++.|||-.+.+++.+.- +..|.+||+..+.-. .+.
T Consensus 261 EDLqWSptE~~vfaScS~-------------------------------------------DgsIrIWDiRs~~~~~~~~ 297 (440)
T KOG0302|consen 261 EDLQWSPTEDGVFASCSC-------------------------------------------DGSIRIWDIRSGPKKAAVS 297 (440)
T ss_pred hhhccCCccCceEEeeec-------------------------------------------CceEEEEEecCCCccceeE
Confidence 899999999888776442 357888888776321 111
Q ss_pred CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC-CeeecC
Q 003886 290 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLT 368 (789)
Q Consensus 290 ~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt 368 (789)
-...+..+.-+.|+-+-.. |++.++ +..+-++|++.- ..+ .+-...
T Consensus 298 ~kAh~sDVNVISWnr~~~l----LasG~D---------------dGt~~iwDLR~~--------------~~~~pVA~fk 344 (440)
T KOG0302|consen 298 TKAHNSDVNVISWNRREPL----LASGGD---------------DGTLSIWDLRQF--------------KSGQPVATFK 344 (440)
T ss_pred eeccCCceeeEEccCCcce----eeecCC---------------CceEEEEEhhhc--------------cCCCcceeEE
Confidence 0122335667788887765 776652 235666776311 222 344566
Q ss_pred CCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 369 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 369 ~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
.+...+++..|+|.-..++-.+.. .++|-+||+..
T Consensus 345 ~Hk~pItsieW~p~e~s~iaasg~----------D~QitiWDlsv 379 (440)
T KOG0302|consen 345 YHKAPITSIEWHPHEDSVIAASGE----------DNQITIWDLSV 379 (440)
T ss_pred eccCCeeEEEeccccCceEEeccC----------CCcEEEEEeec
Confidence 677889999999976665544433 35788888754
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.94 Score=46.04 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=42.8
Q ss_pred CCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC---CeeecC
Q 003886 292 PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL---PVVNLT 368 (789)
Q Consensus 292 ~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~Lt 368 (789)
..+..+..+.|+|-+.+ |+-.+.+ |+..+|... .++ ..-.|-
T Consensus 53 ~Hd~~vtgvdWap~snr----Ivtcs~d-------------rnayVw~~~------------------~~~~WkptlvLl 97 (361)
T KOG1523|consen 53 EHDKIVTGVDWAPKSNR----IVTCSHD-------------RNAYVWTQP------------------SGGTWKPTLVLL 97 (361)
T ss_pred hhCcceeEEeecCCCCc----eeEccCC-------------CCccccccC------------------CCCeeccceeEE
Confidence 34556778999999999 8887732 223344331 122 222344
Q ss_pred CCCCccCcceecCCCCEEEEEec
Q 003886 369 ESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 369 ~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
..++.+....|||.++++|..+.
T Consensus 98 RiNrAAt~V~WsP~enkFAVgSg 120 (361)
T KOG1523|consen 98 RINRAATCVKWSPKENKFAVGSG 120 (361)
T ss_pred EeccceeeEeecCcCceEEeccC
Confidence 45677899999999999887663
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.17 Score=56.53 Aligned_cols=176 Identities=13% Similarity=0.083 Sum_probs=96.0
Q ss_pred eEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-
Q 003886 110 QAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS- 188 (789)
Q Consensus 110 ~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~- 188 (789)
.|.|...+.-++++...+.|.+|++.. ....+.|+... .....+.|+|-|.+.|--+... =|.+|+..
T Consensus 75 Sl~f~~~E~LlaagsasgtiK~wDlee-Ak~vrtLtgh~-----~~~~sv~f~P~~~~~a~gStdt-----d~~iwD~Rk 143 (825)
T KOG0267|consen 75 SLTFDTSERLLAAGSASGTIKVWDLEE-AKIVRTLTGHL-----LNITSVDFHPYGEFFASGSTDT-----DLKIWDIRK 143 (825)
T ss_pred eeecCcchhhhcccccCCceeeeehhh-hhhhhhhhccc-----cCcceeeeccceEEeccccccc-----cceehhhhc
Confidence 355555666677777788899998842 23334555443 3455677999999875433221 25566422
Q ss_pred -ceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCccccc
Q 003886 189 -QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY 267 (789)
Q Consensus 189 -~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~ 267 (789)
....... +..+.+ ..+.++|||++++-..++...+ .|+...++..+.++.+..-....+|.|.---+.
T Consensus 144 ~Gc~~~~~---s~~~vv------~~l~lsP~Gr~v~~g~ed~tvk--i~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla 212 (825)
T KOG0267|consen 144 KGCSHTYK---SHTRVV------DVLRLSPDGRWVASGGEDNTVK--IWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLA 212 (825)
T ss_pred cCceeeec---CCccee------EEEeecCCCceeeccCCcceee--eecccccccccccccccccccccccCchhhhhc
Confidence 1111111 111112 6789999999999877755433 444333333322232222222222333211222
Q ss_pred CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCC
Q 003886 268 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 268 ~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~ 308 (789)
.+..+..+-.||+++-++..-. -+....+....|.|||+.
T Consensus 213 ~Gs~d~tv~f~dletfe~I~s~-~~~~~~v~~~~fn~~~~~ 252 (825)
T KOG0267|consen 213 PGSSDRTVRFWDLETFEVISSG-KPETDGVRSLAFNPDGKI 252 (825)
T ss_pred cCCCCceeeeeccceeEEeecc-CCccCCceeeeecCCcee
Confidence 3445677888998765443221 222446778899999984
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=94.26 E-value=1.3 Score=45.16 Aligned_cols=96 Identities=16% Similarity=0.108 Sum_probs=66.5
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
....|+++|+.+++...-. ......+....+.|+-.. |+..+..+ ..|.++++
T Consensus 113 ~~GvIrVid~~~~~~~~~~-~ghG~sINeik~~p~~~q----lvls~SkD--------------~svRlwnI-------- 165 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNY-RGHGGSINEIKFHPDRPQ----LVLSASKD--------------HSVRLWNI-------- 165 (385)
T ss_pred ceeEEEEEecchhhhccce-eccCccchhhhcCCCCCc----EEEEecCC--------------ceEEEEec--------
Confidence 4578999999988754321 233446778899999888 77766332 25667776
Q ss_pred hhhhhcCCCCCCCeeecCC----CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 351 ELELKESSSEDLPVVNLTE----SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~----~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
.+..+..+.. +.+.+.+..||+||.+|+...++. +|.+|+++.
T Consensus 166 ---------~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDh-----------slk~W~l~~ 212 (385)
T KOG1034|consen 166 ---------QTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDH-----------SLKLWRLNV 212 (385)
T ss_pred ---------cCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcc-----------eEEEEecCh
Confidence 5555555543 355688999999999988776654 577777764
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.18 E-value=1.8 Score=45.87 Aligned_cols=146 Identities=10% Similarity=0.070 Sum_probs=86.3
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
.+..|.+||+++|++.... ......+..+.|.|-.-. +...+. ....+.+.|++.-
T Consensus 264 aD~TV~lWD~~~g~p~~s~-~~~~k~Vq~l~wh~~~p~----~LLsGs--------------~D~~V~l~D~R~~----- 319 (463)
T KOG0270|consen 264 ADKTVKLWDVDTGKPKSSI-THHGKKVQTLEWHPYEPS----VLLSGS--------------YDGTVALKDCRDP----- 319 (463)
T ss_pred CCceEEEEEcCCCCcceeh-hhcCCceeEEEecCCCce----EEEecc--------------ccceEEeeeccCc-----
Confidence 4578999999999988773 224457889999998776 555552 2234556665310
Q ss_pred hhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeee
Q 003886 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~ 430 (789)
...+..-.. .+.+...+|.|-....+|++.++ ..||-+|....+.-. +.+.
T Consensus 320 --------~~s~~~wk~---~g~VEkv~w~~~se~~f~~~tdd----------G~v~~~D~R~~~~~v-----wt~~--- 370 (463)
T KOG0270|consen 320 --------SNSGKEWKF---DGEVEKVAWDPHSENSFFVSTDD----------GTVYYFDIRNPGKPV-----WTLK--- 370 (463)
T ss_pred --------cccCceEEe---ccceEEEEecCCCceeEEEecCC----------ceEEeeecCCCCCce-----eEEE---
Confidence 011111111 33466677887777666776554 258888876644211 1110
Q ss_pred eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003886 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (789)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~ 479 (789)
. +...+..+++++.-..++.++.......||.++...++
T Consensus 371 A----------Hd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 371 A----------HDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred e----------ccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc
Confidence 0 11235556666655667667666677788888765543
|
|
| >PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2 | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.2 Score=54.82 Aligned_cols=82 Identities=17% Similarity=0.237 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHCCcEE-----EE-EcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccH
Q 003886 609 SYSKSLAFLSSVGYSL-----LI-VNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGG 682 (789)
Q Consensus 609 ~~~~~~~~la~~Gy~V-----~~-~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG 682 (789)
.|...++.|.+.||.. .+ +|.|-+.. ....-...+.+.|+.+.+. ...+|.|+||||||
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~~~~------------~~~~~~~~lk~~ie~~~~~---~~~kv~li~HSmGg 130 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRLSPA------------ERDEYFTKLKQLIEEAYKK---NGKKVVLIAHSMGG 130 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhhchh------------hHHHHHHHHHHHHHHHHHh---cCCcEEEEEeCCCc
Confidence 5777888999988753 23 67764322 0011244556666666554 26899999999999
Q ss_pred HHHHHHHHhCCC------ceeEEEEeCCc
Q 003886 683 FLTTHLIGQAPD------KFVAAAARNPL 705 (789)
Q Consensus 683 ~~a~~~~~~~p~------~~~a~v~~~pv 705 (789)
.++..++...+. .+++.|..++.
T Consensus 131 l~~~~fl~~~~~~~W~~~~i~~~i~i~~p 159 (389)
T PF02450_consen 131 LVARYFLQWMPQEEWKDKYIKRFISIGTP 159 (389)
T ss_pred hHHHHHHHhccchhhHHhhhhEEEEeCCC
Confidence 999998876642 47888888764
|
3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process |
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.89 E-value=7.3 Score=44.37 Aligned_cols=229 Identities=16% Similarity=0.083 Sum_probs=117.9
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
.++.+..-+.+|+-.+.+++.+ .|+...+........+..-.. .....-.....+..+..|.||++++++...+.
T Consensus 253 ~~l~~~~~~~~lvsgS~D~t~r--vWd~~sg~C~~~l~gh~stv~--~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~- 327 (537)
T KOG0274|consen 253 WGLAFPSGGDKLVSGSTDKTER--VWDCSTGECTHSLQGHTSSVR--CLTIDPFLLVSGSRDNTVKVWDVTNGACLNLL- 327 (537)
T ss_pred eeEEEecCCCEEEEEecCCcEE--eEecCCCcEEEEecCCCceEE--EEEccCceEeeccCCceEEEEeccCcceEEEe-
Confidence 6777776566666666676654 344333333333322221111 01111011223457789999999999887773
Q ss_pred CC-CCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecC
Q 003886 291 IP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLT 368 (789)
Q Consensus 291 ~~-~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt 368 (789)
. ....+..+... +.. ++..+. ...|-++|+ .+++ .+.|+
T Consensus 328 -~~h~~~V~~v~~~--~~~----lvsgs~---------------d~~v~VW~~-----------------~~~~cl~sl~ 368 (537)
T KOG0274|consen 328 -RGHTGPVNCVQLD--EPL----LVSGSY---------------DGTVKVWDP-----------------RTGKCLKSLS 368 (537)
T ss_pred -ccccccEEEEEec--CCE----EEEEec---------------CceEEEEEh-----------------hhceeeeeec
Confidence 3 33455555555 443 444441 124666676 3333 56777
Q ss_pred CCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCC-CCCCcccceeeEEeeeeccCCCCCccccccCCC
Q 003886 369 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN-GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 447 (789)
Q Consensus 369 ~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~-~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~ 447 (789)
.+.+.+....+.+. +.++-.+.+ ..|.+||+.+. +-.....+...++.
T Consensus 369 gH~~~V~sl~~~~~-~~~~Sgs~D-----------~~IkvWdl~~~~~c~~tl~~h~~~v~------------------- 417 (537)
T KOG0274|consen 369 GHTGRVYSLIVDSE-NRLLSGSLD-----------TTIKVWDLRTKRKCIHTLQGHTSLVS------------------- 417 (537)
T ss_pred CCcceEEEEEecCc-ceEEeeeec-----------cceEeecCCchhhhhhhhcCCccccc-------------------
Confidence 77777776665443 555555544 35899999886 22221112211111
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 448 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
.....++ ++.+...++...+| |..+++..+............+.. ++..++.++.... +.+.|+..+
T Consensus 418 --~l~~~~~-~Lvs~~aD~~Ik~W--D~~~~~~~~~~~~~~~~~v~~l~~-~~~~il~s~~~~~---~~l~dl~~~ 484 (537)
T KOG0274|consen 418 --SLLLRDN-FLVSSSADGTIKLW--DAEEGECLRTLEGRHVGGVSALAL-GKEEILCSSDDGS---VKLWDLRSG 484 (537)
T ss_pred --ccccccc-eeEeccccccEEEe--ecccCceeeeeccCCcccEEEeec-CcceEEEEecCCe---eEEEecccC
Confidence 1122344 44565556656666 777888877766631112222222 2455555555444 344465544
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.82 E-value=3.3 Score=45.66 Aligned_cols=100 Identities=20% Similarity=0.204 Sum_probs=62.3
Q ss_pred CccCceEEEEEccCCceEeccCCCC-CCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc
Q 003886 269 GKRQPSLFVININSGEVQAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (789)
Q Consensus 269 ~~~~~~l~v~d~~~g~~~~l~~~~~-~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (789)
+.....++++++.+|++..-..+.. ...+....|+.+-.. |+.++ ....+..++.
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~c----iyS~~---------------ad~~v~~~~~----- 131 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGC----IYSVG---------------ADLKVVYILE----- 131 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCc----eEecC---------------CceeEEEEec-----
Confidence 3356789999999998865421122 224555566666554 44444 2235556665
Q ss_pred hhhhhhhhcCCCCCCCeeecCC-CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCC
Q 003886 348 EASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~ 417 (789)
......+... ......+...||||+.|+..+ .+|.++|.++++..
T Consensus 132 ------------~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-------------~~ik~~~~~~kevv 177 (541)
T KOG4547|consen 132 ------------KEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-------------RQIKVLDIETKEVV 177 (541)
T ss_pred ------------ccceeeeeeccCCCccceEEEcCCCCEEEecc-------------ceEEEEEccCceEE
Confidence 4444444432 234577889999999987655 25999999886653
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.74 Score=51.02 Aligned_cols=168 Identities=16% Similarity=0.150 Sum_probs=81.9
Q ss_pred cCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc---eEeccCCCCCCccceEEE-eeCCCCCccEEEEEeecCCce
Q 003886 248 KDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE---VQAVKGIPKSLSVGQVVW-APLNEGLHQYLVFVGWSSETR 323 (789)
Q Consensus 248 ~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~---~~~l~~~~~~~~~~~~~w-SPDg~~~~~~l~f~~~~~~~~ 323 (789)
..+..|..+...--+....++...+..+.+|+...+. ...| -....++..++. .++.. ++..+
T Consensus 70 e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti--r~H~DYVkcla~~ak~~~-----lvaSg------ 136 (735)
T KOG0308|consen 70 EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI--RTHKDYVKCLAYIAKNNE-----LVASG------ 136 (735)
T ss_pred hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh--hcccchheeeeecccCce-----eEEec------
Confidence 3455666554444443334445567789999987653 1222 112234555566 55544 33333
Q ss_pred eeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecC-CCCCccCcceecCCCCEEEEEecCCCCCCCCccc
Q 003886 324 KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 402 (789)
Q Consensus 324 ~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~ 402 (789)
| -...|+++|+..+... + ....+......|. +...++.+.+-.+.|..| ++.. .
T Consensus 137 --G------LD~~IflWDin~~~~~---l---~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~i--vsGg---------t 191 (735)
T KOG0308|consen 137 --G------LDRKIFLWDINTGTAT---L---VASFNNVTVNSLGSGPKDSIYSLAMNQTGTII--VSGG---------T 191 (735)
T ss_pred --C------CCccEEEEEccCcchh---h---hhhccccccccCCCCCccceeeeecCCcceEE--EecC---------c
Confidence 1 2236788887211000 0 0000011111122 223345555666666332 2211 2
Q ss_pred cceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 403 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 403 ~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
...|.+||..+..+.-...+..+ ++..+..++||+++ ++++.+|..+||.+
T Consensus 192 ek~lr~wDprt~~kimkLrGHTd-------------------NVr~ll~~dDGt~~-ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 192 EKDLRLWDPRTCKKIMKLRGHTD-------------------NVRVLLVNDDGTRL-LSASSDGTIRLWDL 242 (735)
T ss_pred ccceEEeccccccceeeeecccc-------------------ceEEEEEcCCCCeE-eecCCCceEEeeec
Confidence 34699999888665322223322 23344567899877 56666777888754
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.70 E-value=8.3 Score=41.51 Aligned_cols=143 Identities=18% Similarity=0.240 Sum_probs=74.0
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
..+.+|++..++..... ......+..+.|+|+++. ++..... ...|..+|.
T Consensus 178 ~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~----~~~~~~~--------------d~~i~~wd~---------- 228 (466)
T COG2319 178 GTIKLWDLRTGKPLSTL-AGHTDPVSSLAFSPDGGL----LIASGSS--------------DGTIRLWDL---------- 228 (466)
T ss_pred CceEEEEcCCCceEEee-ccCCCceEEEEEcCCcce----EEEEecC--------------CCcEEEEEC----------
Confidence 56778888765554441 123456778899999984 4444211 113334465
Q ss_pred hhhcCCCCCCCee--ecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeee
Q 003886 353 ELKESSSEDLPVV--NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (789)
Q Consensus 353 ~~~~~~~~~~~~~--~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~ 430 (789)
..+... .+..+.... ...|+|+|+.++..+.. ..+.++|....... +...
T Consensus 229 -------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d-----------~~~~~~~~~~~~~~--------~~~~- 280 (466)
T COG2319 229 -------STGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSD-----------GTIRLWDLRSSSSL--------LRTL- 280 (466)
T ss_pred -------CCCcEEeeecCCCCcce-eEeECCCCCEEEEecCC-----------CcEEEeeecCCCcE--------EEEE-
Confidence 222222 233333322 33899999666633322 35778877654330 0000
Q ss_pred eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003886 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (789)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt 484 (789)
.. . ...+....|.|++..++. ...++...+| +..++......
T Consensus 281 ~~-~--------~~~v~~~~~~~~~~~~~~-~~~d~~~~~~--~~~~~~~~~~~ 322 (466)
T COG2319 281 SG-H--------SSSVLSVAFSPDGKLLAS-GSSDGTVRLW--DLETGKLLSSL 322 (466)
T ss_pred ec-C--------CccEEEEEECCCCCEEEE-eeCCCcEEEE--EcCCCceEEEe
Confidence 00 0 012334478888876766 4444555566 76666544433
|
|
| >PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.64 Score=47.13 Aligned_cols=180 Identities=13% Similarity=0.105 Sum_probs=86.9
Q ss_pred cEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHH-HHHHHHHcCCCCCc
Q 003886 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT-AIDHVIDMGLANPS 671 (789)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~-~i~~l~~~~~~d~~ 671 (789)
|+||++ |..++ .........+...++|+.++.+-.+-. .+. +....+....+ .++.+.+...-+..
T Consensus 1 plvvl~-gW~gA-~~~hl~KY~~~Y~~~g~~il~~~~~~~-----~~~------~~~~~~~~~~~~l~~~l~~~~~~~~~ 67 (240)
T PF05705_consen 1 PLVVLL-GWMGA-KPKHLAKYSDLYQDPGFDILLVTSPPA-----DFF------WPSKRLAPAADKLLELLSDSQSASPP 67 (240)
T ss_pred CEEEEE-eCCCC-CHHHHHHHHHHHHhcCCeEEEEeCCHH-----HHe------eeccchHHHHHHHHHHhhhhccCCCC
Confidence 555554 64432 233444556666779999999876421 110 00012222222 33333333222224
Q ss_pred cEEEEEcCccHHHHHHHHHh---C-------CCceeEEEEeCCccchh------hhhcCCCCC--cc-----hhhhh-cc
Q 003886 672 KVTVVGGSHGGFLTTHLIGQ---A-------PDKFVAAAARNPLCNLA------LMVGTTDIP--DW-----CYVES-YG 727 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~---~-------p~~~~a~v~~~pv~~~~------~~~~~~~~~--~~-----~~~~~-~~ 727 (789)
+|.+-.+|.||......+.. . -.++++.|..+...... .+....... .| ..... +.
T Consensus 68 ~il~H~FSnGG~~~~~~l~~~~~~~~~~~~~~~~i~g~I~DS~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (240)
T PF05705_consen 68 PILFHSFSNGGSFLYSQLLEAYQSRKKFGKLLPRIKGIIFDSCPGIPTYSSSARAFSAALPKSSPRWFVPLWPLLQFLLR 147 (240)
T ss_pred CEEEEEEECchHHHHHHHHHHHHhcccccccccccceeEEeCCCCccccccHHHHHHHHcCccchhhHHHHHHHHHHHHH
Confidence 89999999988877765441 1 12377888776543211 110000000 00 00000 00
Q ss_pred Cc-cccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 728 SK-GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 728 ~~-~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.. ........+ .....+.+...........+|-|++.+.+|.+||.+..+++.+..++
T Consensus 148 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~ 206 (240)
T PF05705_consen 148 LSIISYFIFGYP--DVQEYYRRALNDFANSPSRCPRLYLYSKADPLIPWRDVEEHAEEARR 206 (240)
T ss_pred HHHHHHHHhcCC--cHHHHHHHHHhhhhcCCCCCCeEEecCCCCcCcCHHHHHHHHHHHHH
Confidence 00 000000111 11111222111122345568999999999999999999988876543
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.35 E-value=6.3 Score=45.43 Aligned_cols=104 Identities=13% Similarity=0.095 Sum_probs=58.5
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCC----ccceeecCCcceecccEEEEeCCCCCeEEEEecCCC
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENEN----SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN 176 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~ 176 (789)
.+..|+||..+|+... ....++.-.+.. +.. ...+... .....|+|.++| .|..+ +.+.
T Consensus 367 s~avS~~g~~~A~v~~--------~~~~l~vg~~~~-~~~~~~~~~~~~~~------~~Lt~PS~d~~g-~vWtv-d~~~ 429 (599)
T PRK13613 367 RVAVSRDESRAAGISA--------DGDSVYVGSLTP-GASIGVHSWGVTAD------GRLTSPSWDGRG-DLWVV-DRDP 429 (599)
T ss_pred ceEEcCCCceEEEEcC--------CCcEEEEeccCC-CCccccccceeecc------CcccCCcCcCCC-CEEEe-cCCC
Confidence 3455788888887732 123566544322 222 1122222 246789999999 66554 4433
Q ss_pred CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeec
Q 003886 177 ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (789)
Q Consensus 177 ~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~ 228 (789)
...+++.+. .+|+... ++.+ ...| ..+..+..|+||.++|.+.+.
T Consensus 430 ~~~~vl~v~~~~G~~~~-V~~~-~l~g-----~~I~~lrvSrDG~RvAvv~~~ 475 (599)
T PRK13613 430 ADPRLLWLLQGDGEPVE-VRTP-ELDG-----HRVVAVRVARDGVRVALIVEK 475 (599)
T ss_pred CCceEEEEEcCCCcEEE-eecc-ccCC-----CEeEEEEECCCccEEEEEEec
Confidence 344444444 5555533 3322 1111 134899999999999998764
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.33 E-value=1.8 Score=46.16 Aligned_cols=39 Identities=13% Similarity=0.232 Sum_probs=29.5
Q ss_pred ceEEEEEccCCceEeccCCCCCC-ccceEEEeeCCCCCccEEEEEe
Q 003886 273 PSLFVININSGEVQAVKGIPKSL-SVGQVVWAPLNEGLHQYLVFVG 317 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~-~~~~~~wSPDg~~~~~~l~f~~ 317 (789)
..||+|.+.+|+...+ ...+. .+.-..||-||+. |+-.+
T Consensus 103 g~lYlWelssG~LL~v--~~aHYQ~ITcL~fs~dgs~----iiTgs 142 (476)
T KOG0646|consen 103 GNLYLWELSSGILLNV--LSAHYQSITCLKFSDDGSH----IITGS 142 (476)
T ss_pred CcEEEEEeccccHHHH--HHhhccceeEEEEeCCCcE----EEecC
Confidence 6799999999987766 34443 6778899999996 55444
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=93.20 E-value=4.2 Score=45.32 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=25.3
Q ss_pred CceEEEEEccCCceEecc-CCCCCCccceEEEeeCCCC
Q 003886 272 QPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~-~~~~~~~~~~~~wSPDg~~ 308 (789)
+..+..||+++++..-.. -.....++.+.+|.|+...
T Consensus 121 DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~ 158 (720)
T KOG0321|consen 121 DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPA 158 (720)
T ss_pred CceeeeeeeccceeecceeecccccccchhhhccCCCc
Confidence 467888999887764331 0233446778999999986
|
|
| >COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.2 Score=54.52 Aligned_cols=112 Identities=19% Similarity=0.176 Sum_probs=63.8
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH-----------------HHHHHHHCCcEEEEEcCCCCCCCCch
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-----------------SLAFLSSVGYSLLIVNYRGSLGFGEE 638 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-----------------~~~~la~~Gy~V~~~d~rGs~G~G~~ 638 (789)
+.+|.+.+++ ...+.|+|+++-|||++........ +..-|.+. -.+|.+|.+=.+||..+
T Consensus 87 ~ffy~fe~~n--dp~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~-adLvFiDqPvGTGfS~a 163 (498)
T COG2939 87 FFFYTFESPN--DPANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDF-ADLVFIDQPVGTGFSRA 163 (498)
T ss_pred EEEEEecCCC--CCCCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccC-CceEEEecCcccCcccc
Confidence 5566666532 5668999999999999743321110 11112222 36788885534788775
Q ss_pred hhccCCCCCCcccHHHHHHHHHHHHHc-CCC--CCccEEEEEcCccHHHHHHHHHh
Q 003886 639 ALQSLPGKVGSQDVNDVLTAIDHVIDM-GLA--NPSKVTVVGGSHGGFLTTHLIGQ 691 (789)
Q Consensus 639 ~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~--d~~rv~l~G~S~GG~~a~~~~~~ 691 (789)
.......+.. ..-+|+..+.+.+.+. +.. ...+..|+|-||||+-+..+|..
T Consensus 164 ~~~e~~~d~~-~~~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~ 218 (498)
T COG2939 164 LGDEKKKDFE-GAGKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHE 218 (498)
T ss_pred cccccccchh-ccchhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHH
Confidence 2222111111 1134555555554442 111 22478999999999988877653
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.95 E-value=6.4 Score=44.93 Aligned_cols=65 Identities=8% Similarity=-0.008 Sum_probs=37.3
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCcee----E--EEecCCCccccccCCCcccceeecCCCCEEEEEeec
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLE----K--EFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~----~--~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~ 228 (789)
....|+|+++| ++..+.+.+ ...+..+...+... . ....+ ...| ..+..+..|+||.++|.+.+.
T Consensus 384 ~Lt~PS~d~~g-~vWtv~~g~--~~~vv~~~~~g~~~~~~~~~~~v~~~-~l~g-----~~I~~lrvSrDG~R~Avi~~~ 454 (573)
T PRK13614 384 TLTRPSFSPQD-WVWTAGPGG--NGRIVAYRPTGVAEGAQAPTVTLTAD-WLAG-----RTVKELRVSREGVRALVISEQ 454 (573)
T ss_pred CccCCcccCCC-CEEEeeCCC--CceEEEEecCCCcccccccceeeccc-ccCC-----CeeEEEEECCCccEEEEEEEe
Confidence 36789999999 776554432 22455544333211 0 11111 1111 124899999999999998764
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=92.88 E-value=6.6 Score=39.48 Aligned_cols=177 Identities=16% Similarity=0.122 Sum_probs=100.2
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
....|-.+|..+|+++.+. +........+.--|||.. .++- . ...|-++|-
T Consensus 81 g~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpdg~~-----Witd-~--------------~~aI~R~dp-------- 131 (353)
T COG4257 81 GTGAIGHLDPATGEVETYP-LGSGASPHGIVVGPDGSA-----WITD-T--------------GLAIGRLDP-------- 131 (353)
T ss_pred ccccceecCCCCCceEEEe-cCCCCCCceEEECCCCCe-----eEec-C--------------cceeEEecC--------
Confidence 4567889999999998874 444556677888999975 2221 1 115777775
Q ss_pred hhhhhcCCCCCCCeeec--CCC--CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeE
Q 003886 351 ELELKESSSEDLPVVNL--TES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~L--t~~--~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v 426 (789)
++.+.++. +.. ......+.|.++|. |.|+... |.+. ++|-.+ .+
T Consensus 132 ---------kt~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~-----G~yG------rLdPa~-----------~~ 179 (353)
T COG4257 132 ---------KTLEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQI-----GAYG------RLDPAR-----------NV 179 (353)
T ss_pred ---------cccceEEeecccccCCCcccceeeCCCcc-EEEeecc-----ccce------ecCccc-----------Cc
Confidence 55555543 322 44577899999997 6676654 3221 222221 12
Q ss_pred EeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC--CceeEEeeecCCEEEE
Q 003886 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIA 504 (789)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~--~~~~~~~s~dg~~l~~ 504 (789)
+.++..|.. ...+.++-.|||. ++|++-.+ ..|-++|..++..+.+..... ..+...++..=+.+..
T Consensus 180 i~vfpaPqG--------~gpyGi~atpdGs-vwyaslag--naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wi 248 (353)
T COG4257 180 ISVFPAPQG--------GGPYGICATPDGS-VWYASLAG--NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWI 248 (353)
T ss_pred eeeeccCCC--------CCCcceEECCCCc-EEEEeccc--cceEEcccccCCcceecCCCcccccccccccCccCcEEE
Confidence 222322221 1235677889997 77765433 357888988887666654433 2222223222233444
Q ss_pred EEeCCCCCCeEEEEeecc
Q 003886 505 VSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 505 ~~ss~~~p~~i~~~~~~~ 522 (789)
+. -....++++++..
T Consensus 249 tt---wg~g~l~rfdPs~ 263 (353)
T COG4257 249 TT---WGTGSLHRFDPSV 263 (353)
T ss_pred ec---cCCceeeEeCccc
Confidence 32 2234577777653
|
|
| >PLN02633 palmitoyl protein thioesterase family protein | Back alignment and domain information |
|---|
Probab=92.77 E-value=1.3 Score=45.68 Aligned_cols=104 Identities=17% Similarity=0.145 Sum_probs=60.7
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHHHHHHHHH-CCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCC
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (789)
..+.|+|| .||-+.+..........+.+.+ -|.-+.++.. |.. . ...+...-.+.+..+.+.+.+.+.
T Consensus 23 ~~~~P~Vi-wHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~i-g~~-~--------~~s~~~~~~~Qve~vce~l~~~~~ 91 (314)
T PLN02633 23 SVSVPFIM-LHGIGTQCSDATNANFTQLLTNLSGSPGFCLEI-GNG-V--------GDSWLMPLTQQAEIACEKVKQMKE 91 (314)
T ss_pred cCCCCeEE-ecCCCcccCCchHHHHHHHHHhCCCCceEEEEE-CCC-c--------cccceeCHHHHHHHHHHHHhhchh
Confidence 34556665 5997665444444445555544 3666666654 211 1 111222223344445555554333
Q ss_pred CCCccEEEEEcCccHHHHHHHHHhCCC--ceeEEEEeCC
Q 003886 668 ANPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNP 704 (789)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~~~~~p~--~~~a~v~~~p 704 (789)
.. +-+.++|+|.||.++=.++.+.|+ .++-.|..++
T Consensus 92 l~-~G~naIGfSQGGlflRa~ierc~~~p~V~nlISlgg 129 (314)
T PLN02633 92 LS-QGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLAG 129 (314)
T ss_pred hh-CcEEEEEEccchHHHHHHHHHCCCCCCcceEEEecC
Confidence 33 459999999999999999988876 4777777654
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.72 E-value=3.3 Score=46.68 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=69.1
Q ss_pred cceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC----CC
Q 003886 297 VGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES----IS 372 (789)
Q Consensus 297 ~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~----~~ 372 (789)
..++.-.|..+. ++.+. ..| .|.++++ ..++.+++..+ .+
T Consensus 599 lYDm~Vdp~~k~----v~t~c-------------QDr--nirif~i-----------------~sgKq~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 599 LYDMAVDPTSKL----VVTVC-------------QDR--NIRIFDI-----------------ESGKQVKSFKGSRDHEG 642 (1080)
T ss_pred EEEeeeCCCcce----EEEEe-------------ccc--ceEEEec-----------------cccceeeeecccccCCC
Confidence 446666777776 65554 233 5666676 44444444333 33
Q ss_pred ccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccc
Q 003886 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 452 (789)
Q Consensus 373 ~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws 452 (789)
..--....|.|-+||....+. .|.++|..+|+-.....+..++ +..+.|+
T Consensus 643 ~lIKv~lDPSgiY~atScsdk-----------tl~~~Df~sgEcvA~m~GHsE~-------------------VTG~kF~ 692 (1080)
T KOG1408|consen 643 DLIKVILDPSGIYLATSCSDK-----------TLCFVDFVSGECVAQMTGHSEA-------------------VTGVKFL 692 (1080)
T ss_pred ceEEEEECCCccEEEEeecCC-----------ceEEEEeccchhhhhhcCcchh-------------------eeeeeec
Confidence 444556788999998777554 4999999888764333333332 2356799
Q ss_pred cCCCEEEEEEEeCCeEEEEEEEC
Q 003886 453 SDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 453 ~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
+|=+.|+ +...+|..-+|.+..
T Consensus 693 nDCkHlI-SvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 693 NDCKHLI-SVSGDGCIFVWKLPL 714 (1080)
T ss_pred ccchhhe-eecCCceEEEEECch
Confidence 9988774 555566666666554
|
|
| >KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.70 E-value=4.2 Score=40.75 Aligned_cols=98 Identities=21% Similarity=0.242 Sum_probs=56.5
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHH-CCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHH-HHHHHHHHcCCCC
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL-TAIDHVIDMGLAN 669 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~-~~i~~l~~~~~~d 669 (789)
.|+| +.||-+.+.....+....+.+.+ -|..|.+.+.-- |-..++ -. ...++. .+.+.+...+..
T Consensus 24 ~P~i-i~HGigd~c~~~~~~~~~q~l~~~~g~~v~~leig~--g~~~s~--------l~-pl~~Qv~~~ce~v~~m~~l- 90 (296)
T KOG2541|consen 24 VPVI-VWHGIGDSCSSLSMANLTQLLEELPGSPVYCLEIGD--GIKDSS--------LM-PLWEQVDVACEKVKQMPEL- 90 (296)
T ss_pred CCEE-EEeccCcccccchHHHHHHHHHhCCCCeeEEEEecC--Ccchhh--------hc-cHHHHHHHHHHHHhcchhc-
Confidence 4555 56996665444445556666665 588888888621 111222 11 233434 344554433322
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCC-ceeEEEEe
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAAR 702 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~-~~~a~v~~ 702 (789)
.+-+.++|.|.||.++-.++...++ .++-.|..
T Consensus 91 sqGynivg~SQGglv~Raliq~cd~ppV~n~ISL 124 (296)
T KOG2541|consen 91 SQGYNIVGYSQGGLVARALIQFCDNPPVKNFISL 124 (296)
T ss_pred cCceEEEEEccccHHHHHHHHhCCCCCcceeEec
Confidence 4568999999999998888765432 34444443
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.67 E-value=4.8 Score=43.75 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=41.1
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCCcee---eee--eeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC
Q 003886 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRK---LGI--KYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES 370 (789)
Q Consensus 296 ~~~~~~wSPDg~~~~~~l~f~~~~~~~~~---~g~--~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 370 (789)
....+.|.|||+ |++.-....... .+. .........|++++. ++++.+.+..+
T Consensus 125 ~~~~l~~gpDG~-----LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p-----------------dg~~~e~~a~G 182 (367)
T TIGR02604 125 SLNSLAWGPDGW-----LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP-----------------DGGKLRVVAHG 182 (367)
T ss_pred cccCceECCCCC-----EEEecccCCCceeccCCCccCcccccCceEEEEec-----------------CCCeEEEEecC
Confidence 356889999996 666432111000 000 000012246999997 66777777766
Q ss_pred CCccCcceecCCCCE
Q 003886 371 ISSAFFPRFSPDGKF 385 (789)
Q Consensus 371 ~~~~~~p~~SpDG~~ 385 (789)
.......+|+|+|+.
T Consensus 183 ~rnp~Gl~~d~~G~l 197 (367)
T TIGR02604 183 FQNPYGHSVDSWGDV 197 (367)
T ss_pred cCCCccceECCCCCE
Confidence 666778999999975
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.56 E-value=2.9 Score=48.19 Aligned_cols=73 Identities=18% Similarity=0.115 Sum_probs=52.5
Q ss_pred CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCcc
Q 003886 295 LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSA 374 (789)
Q Consensus 295 ~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~ 374 (789)
..+...+||+||.. |+-.+ +.+.|.++.+ ++++.+-|..-.+.+
T Consensus 252 ~~V~~L~fS~~G~~----LlSGG---------------~E~VLv~Wq~-----------------~T~~kqfLPRLgs~I 295 (792)
T KOG1963|consen 252 DEVNSLSFSSDGAY----LLSGG---------------REGVLVLWQL-----------------ETGKKQFLPRLGSPI 295 (792)
T ss_pred cccceeEEecCCce----Eeecc---------------cceEEEEEee-----------------cCCCcccccccCCee
Confidence 35678899999998 77666 3346777777 667755565556678
Q ss_pred CcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 375 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 375 ~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
....+||||...+....+ ++|+++...+-
T Consensus 296 ~~i~vS~ds~~~sl~~~D-----------NqI~li~~~dl 324 (792)
T KOG1963|consen 296 LHIVVSPDSDLYSLVLED-----------NQIHLIKASDL 324 (792)
T ss_pred EEEEEcCCCCeEEEEecC-----------ceEEEEeccch
Confidence 999999999976655543 46777766543
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.97 Score=46.65 Aligned_cols=145 Identities=17% Similarity=0.128 Sum_probs=83.2
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
.+....++|--..|+-....+ . .+.+.+ ..+.+.+-+-+.... ..++|+| +. ..|++.......
T Consensus 189 ti~svkfNpvETsILas~~sD-r--sIvLyD~R~~~Pl~KVi~~mRT----------N~IswnP-ea-fnF~~a~ED~nl 253 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCASD-R--SIVLYDLRQASPLKKVILTMRT----------NTICWNP-EA-FNFVAANEDHNL 253 (433)
T ss_pred ceeEEecCCCcchheeeeccC-C--ceEEEecccCCccceeeeeccc----------cceecCc-cc-cceeeccccccc
Confidence 467888999887776544222 1 255555 344433333333333 5799999 33 344443322211
Q ss_pred CCccCCCCC-CCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003886 234 PTFSLGSTK-GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 234 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (789)
-+++..+.. ......++-+-..+.+|+|.+.|-.++.-+..|-++....+..+.+.-+..=..+..+.||-|++.
T Consensus 254 Y~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsky---- 329 (433)
T KOG0268|consen 254 YTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKY---- 329 (433)
T ss_pred eehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccE----
Confidence 122211111 112233444444467789988787778778889999988887665532222236789999999997
Q ss_pred EEEEee
Q 003886 313 LVFVGW 318 (789)
Q Consensus 313 l~f~~~ 318 (789)
|+..++
T Consensus 330 i~SGSd 335 (433)
T KOG0268|consen 330 IISGSD 335 (433)
T ss_pred EEecCC
Confidence 665553
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=8 Score=44.01 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=39.1
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeec
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~ 228 (789)
....|+|+++| ++..+.+.+ ...+... .+|+... +..+....+ .+..+..|+||.++|.+.+.
T Consensus 374 ~Lt~PS~d~~g-~vWtv~~g~---~~~l~~~~~~G~~~~-v~v~~~~~~------~I~~lrvSrDG~R~Avi~~~ 437 (557)
T PRK13615 374 GLVAPSLDAQG-YVWSTPASD---PRGLVAWGPDGVGHP-VAVSWTATG------RVVSLEVARDGARVLVQLET 437 (557)
T ss_pred ccccCcCcCCC-CEEEEeCCC---ceEEEEecCCCceEE-eeccccCCC------eeEEEEeCCCccEEEEEEec
Confidence 36789999999 776555433 2222223 3454433 343333222 34899999999999998764
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.28 E-value=6.8 Score=44.37 Aligned_cols=89 Identities=7% Similarity=-0.034 Sum_probs=47.2
Q ss_pred cceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc--eeEEEecCCCcc
Q 003886 124 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ--LEKEFHVPQTVH 201 (789)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~ 201 (789)
...+.++++. ..++..+.++... ..+....-..|++...+|+....+ ...++.+..... ...++.......
T Consensus 52 sS~G~lyl~~--R~~~~~~~~~~~~---~~~~~~~~~vs~~e~lvAagt~~g--~V~v~ql~~~~p~~~~~~t~~d~~~~ 124 (726)
T KOG3621|consen 52 SSAGSVYLYN--RHTGEMRKLKNEG---ATGITCVRSVSSVEYLVAAGTASG--RVSVFQLNKELPRDLDYVTPCDKSHK 124 (726)
T ss_pred cccceEEEEe--cCchhhhcccccC---ccceEEEEEecchhHhhhhhcCCc--eEEeehhhccCCCcceeeccccccCC
Confidence 3455666655 3444544444322 013355667999998888865543 222233333222 222333322212
Q ss_pred ccccCCCcccceeecCCCCEEEEE
Q 003886 202 GSVYADGWFEGISWNSDETLIAYV 225 (789)
Q Consensus 202 g~v~~d~~~~~~~wSpDg~~la~~ 225 (789)
..| ..+.||+||+++++.
T Consensus 125 ~rV------Tal~Ws~~~~k~ysG 142 (726)
T KOG3621|consen 125 CRV------TALEWSKNGMKLYSG 142 (726)
T ss_pred ceE------EEEEecccccEEeec
Confidence 223 799999999998774
|
|
| >PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ] | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.77 Score=51.46 Aligned_cols=128 Identities=16% Similarity=0.144 Sum_probs=81.1
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH---HHHHHHHCCcEEEEEcCCCCCCCC----chhhcc--CCC
Q 003886 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFG----EEALQS--LPG 645 (789)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~Gy~V~~~d~rGs~G~G----~~~~~~--~~~ 645 (789)
.|.-.+.+|.+.. + -++.+=||+.. ....+.. .+..-..+||+++.-|- |..+.. .++... ...
T Consensus 16 ~i~fev~LP~~WN--g---R~~~~GgGG~~-G~i~~~~~~~~~~~~~~~G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~ 88 (474)
T PF07519_consen 16 NIRFEVWLPDNWN--G---RFLQVGGGGFA-GGINYADGKASMATALARGYATASTDS-GHQGSAGSDDASFGNNPEALL 88 (474)
T ss_pred eEEEEEECChhhc--c---CeEEECCCeee-CcccccccccccchhhhcCeEEEEecC-CCCCCcccccccccCCHHHHH
Confidence 5666678886331 1 23444333332 1112211 13455689999999994 211111 111100 012
Q ss_pred CCCcccHHHHHHHHHHHHHcCC-CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchh
Q 003886 646 KVGSQDVNDVLTAIDHVIDMGL-ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709 (789)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~-~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~ 709 (789)
+++...+.+...+.+.|++.-+ -.+.+-...|.|-||-.++.+|.++|+.|.++|+.+|..++.
T Consensus 89 dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~~ 153 (474)
T PF07519_consen 89 DFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINWT 153 (474)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHHH
Confidence 4555556777777777777532 567888999999999999999999999999999999988763
|
It also includes several bacterial homologues of unknown function. |
| >PF03283 PAE: Pectinacetylesterase | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.19 Score=53.96 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHH
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG 690 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~ 690 (789)
..-+.+++++|..++.-++++|.|.|.|.||+-++..+-
T Consensus 137 ~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d 175 (361)
T PF03283_consen 137 YRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHAD 175 (361)
T ss_pred HHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHH
Confidence 456788999999998778999999999999998887554
|
|
| >KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.33 Score=53.10 Aligned_cols=89 Identities=22% Similarity=0.285 Sum_probs=62.7
Q ss_pred CCcEEEEEcCCCCCCCc-hhhHHHHHHH-HHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCC-
Q 003886 591 CDPLIVVLHGGPHSVSL-SSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL- 667 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~-~~~~~~~~~l-a~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~- 667 (789)
..-+|+..|||+.-... .+-......| .+.|+-|+.+||.-. +........+++.-+.-|++++..
T Consensus 395 S~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLA-----------PEaPFPRaleEv~fAYcW~inn~al 463 (880)
T KOG4388|consen 395 SRSLIVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLA-----------PEAPFPRALEEVFFAYCWAINNCAL 463 (880)
T ss_pred CceEEEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccC-----------CCCCCCcHHHHHHHHHHHHhcCHHH
Confidence 45689999998874332 2333344444 478999999999642 334445568899999999998632
Q ss_pred --CCCccEEEEEcCccHHHHHHHHH
Q 003886 668 --ANPSKVTVVGGSHGGFLTTHLIG 690 (789)
Q Consensus 668 --~d~~rv~l~G~S~GG~~a~~~~~ 690 (789)
--.+||++.|-|.||.+..-.+.
T Consensus 464 lG~TgEriv~aGDSAGgNL~~~VaL 488 (880)
T KOG4388|consen 464 LGSTGERIVLAGDSAGGNLCFTVAL 488 (880)
T ss_pred hCcccceEEEeccCCCcceeehhHH
Confidence 35699999999999987655443
|
|
| >cd00741 Lipase Lipase | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.32 Score=45.41 Aligned_cols=38 Identities=24% Similarity=0.155 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCC
Q 003886 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP 693 (789)
Q Consensus 654 D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p 693 (789)
.+...++....+ ....+|.++|||+||.+|..++....
T Consensus 13 ~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~~~~ 50 (153)
T cd00741 13 LVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGLDLR 50 (153)
T ss_pred HHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 334444443332 35689999999999999999887654
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.17 E-value=2.2 Score=42.85 Aligned_cols=153 Identities=14% Similarity=0.205 Sum_probs=92.2
Q ss_pred CCccCceEEEEEccCCc---eEecc-------C----CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccC
Q 003886 268 AGKRQPSLFVININSGE---VQAVK-------G----IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 333 (789)
Q Consensus 268 ~~~~~~~l~v~d~~~g~---~~~l~-------~----~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~ 333 (789)
++..+..|.|+|++.-. ..-+. + ......+..+.|-|-... + |++.+-+
T Consensus 61 SGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG----m-FtssSFD------------ 123 (397)
T KOG4283|consen 61 SGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG----M-FTSSSFD------------ 123 (397)
T ss_pred ecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc----e-eeccccc------------
Confidence 34467889999987432 11110 0 111236778899997776 4 4442222
Q ss_pred CcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCC--EEEEEecCCCCCCCCccccceeEEeec
Q 003886 334 PCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK--FLVFLSAKSSVDSGAHSATDSLHRIDW 411 (789)
Q Consensus 334 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~--~la~~s~~~~~~~g~~~~~~~L~~~d~ 411 (789)
-.|.++|. ++.+........+.+.+-+|||=.. .|+-...++ .++.+-|+
T Consensus 124 -htlKVWDt-----------------nTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~----------~~VrLCDi 175 (397)
T KOG4283|consen 124 -HTLKVWDT-----------------NTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRD----------VQVRLCDI 175 (397)
T ss_pred -ceEEEeec-----------------ccceeeEEeecCceeehhhcChhhhcceEEEEecCC----------CcEEEEec
Confidence 25667776 4444433333445566677887543 333333332 46888898
Q ss_pred CCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003886 412 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (789)
Q Consensus 412 ~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt 484 (789)
.+|.-.-...+..+ ++..+.|+|....+++++..++..+||-+...+|-...+-
T Consensus 176 ~SGs~sH~LsGHr~-------------------~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD 229 (397)
T KOG4283|consen 176 ASGSFSHTLSGHRD-------------------GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLD 229 (397)
T ss_pred cCCcceeeeccccC-------------------ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEee
Confidence 88765432233221 3557789999999999999999999998887766655554
|
|
| >PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides [] | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.33 Score=44.45 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC-------CCceeEEEEeCCcc
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-------PDKFVAAAARNPLC 706 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~-------p~~~~a~v~~~pv~ 706 (789)
.+.+...++.+.++.. ..+|.+.|||+||.+|..++... +..+++....+|-+
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~~ 106 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPRV 106 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S--
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCccc
Confidence 3455666666666532 47899999999999999887642 14567777666654
|
Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A .... |
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.85 E-value=17 Score=37.33 Aligned_cols=96 Identities=11% Similarity=0.158 Sum_probs=62.5
Q ss_pred cCceEEEEEccCCce---EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc
Q 003886 271 RQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~---~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (789)
+..+|.+.|+...+. ..+ ...+..+..++.+-+|.. |+-.+.. ..-|.+.|..
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I--~AH~s~Iacv~Ln~~Gt~----vATaStk--------------GTLIRIFdt~---- 212 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSII--NAHDSDIACVALNLQGTL----VATASTK--------------GTLIRIFDTE---- 212 (346)
T ss_pred ccceEEEEEhhhcCcCCceEE--EcccCceeEEEEcCCccE----EEEeccC--------------cEEEEEEEcC----
Confidence 347888999876655 344 234456778899999987 6665521 1245666762
Q ss_pred hhhhhhhhcCCCCCCCeeecCCC--CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 348 EASELELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~~--~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
.+.....+..+ ...+...+||||+++||..|+++ .||++.+..
T Consensus 213 ------------~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKg-----------TlHiF~l~~ 257 (346)
T KOG2111|consen 213 ------------DGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKG-----------TLHIFSLRD 257 (346)
T ss_pred ------------CCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCC-----------eEEEEEeec
Confidence 33334445433 23578899999999999999775 366666544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.73 E-value=9.2 Score=43.30 Aligned_cols=58 Identities=9% Similarity=0.061 Sum_probs=35.5
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEe
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 226 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~ 226 (789)
+.+.+|.-||++|+.+..++. +++=..+|...---++.+.. ...+.||+|.+.++|.-
T Consensus 118 V~SmsWn~dG~kIcIvYeDGa----vIVGsvdGNRIwgKeLkg~~---------l~hv~ws~D~~~~Lf~~ 175 (1189)
T KOG2041|consen 118 VVSMSWNLDGTKICIVYEDGA----VIVGSVDGNRIWGKELKGQL---------LAHVLWSEDLEQALFKK 175 (1189)
T ss_pred EEEEEEcCCCcEEEEEEccCC----EEEEeeccceecchhcchhe---------ccceeecccHHHHHhhh
Confidence 678899999999999877651 22222333322111221111 15688999999888853
|
|
| >PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.65 Score=47.36 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=46.2
Q ss_pred CCCcEEEEEcCCCCCCCch-hhHHHHHHHHH--CCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHH-HHHHHc
Q 003886 590 SCDPLIVVLHGGPHSVSLS-SYSKSLAFLSS--VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVIDM 665 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~-~~~~~~~~la~--~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~ 665 (789)
.+.|+| +.||-+.+.... .+......+.+ -|..|.+++.-. +..++.... + ...+.++.+.+ +.+.+.
T Consensus 4 ~~~PvV-iwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~ig~--~~~~D~~~s----~-f~~v~~Qv~~vc~~l~~~ 75 (279)
T PF02089_consen 4 SPLPVV-IWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEIGN--DPSEDVENS----F-FGNVNDQVEQVCEQLAND 75 (279)
T ss_dssp SS--EE-EE--TT--S--TTTHHHHHHHHHHHSTT--EEE--SSS--SHHHHHHHH----H-HSHHHHHHHHHHHHHHH-
T ss_pred CCCcEE-EEEcCccccCChhHHHHHHHHHHHhCCCceEEEEEECC--Ccchhhhhh----H-HHHHHHHHHHHHHHHhhC
Confidence 445555 569966543222 22222222222 477888888521 110111111 0 11244444433 333333
Q ss_pred CCCCCccEEEEEcCccHHHHHHHHHhCCC-ceeEEEEeCC
Q 003886 666 GLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNP 704 (789)
Q Consensus 666 ~~~d~~rv~l~G~S~GG~~a~~~~~~~p~-~~~a~v~~~p 704 (789)
+.+. +-+.++|+|.||.+.=.++.+.++ .++-.|..++
T Consensus 76 p~L~-~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlgg 114 (279)
T PF02089_consen 76 PELA-NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGG 114 (279)
T ss_dssp GGGT-T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES-
T ss_pred hhhh-cceeeeeeccccHHHHHHHHHCCCCCceeEEEecC
Confidence 3332 469999999999999999888764 5777777654
|
Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A. |
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=91.55 E-value=17 Score=36.81 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=26.1
Q ss_pred ceEEEEEccCCc----eEeccCCCCCCccceEEEeeCCCC
Q 003886 273 PSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 273 ~~l~v~d~~~g~----~~~l~~~~~~~~~~~~~wSPDg~~ 308 (789)
...-+||+++|. -++| +..+-.+..++|+-+|..
T Consensus 173 TTCTiWdie~~~~~~vkTQL--IAHDKEV~DIaf~~~s~~ 210 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQL--IAHDKEVYDIAFLKGSRD 210 (364)
T ss_pred CeEEEEEEeeccccceeeEE--EecCcceeEEEeccCccc
Confidence 567789998873 2456 677778899999998876
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.45 E-value=18 Score=36.87 Aligned_cols=213 Identities=12% Similarity=0.050 Sum_probs=105.0
Q ss_pred cccceeEEEEEEeecCCCC-ccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCC
Q 003886 122 ANKRKKFMLSTVISKENEN-SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQ 198 (789)
Q Consensus 122 ~~~~~~~l~~~~~~~~~~~-~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~ 198 (789)
+++....+..+.+...+.- .+-..... +.+....||-||.+++...-. + -..+| ..++..++-....
T Consensus 45 A~SWD~tVR~wevq~~g~~~~ka~~~~~-----~PvL~v~WsddgskVf~g~~D--k---~~k~wDL~S~Q~~~v~~Hd~ 114 (347)
T KOG0647|consen 45 AGSWDGTVRIWEVQNSGQLVPKAQQSHD-----GPVLDVCWSDDGSKVFSGGCD--K---QAKLWDLASGQVSQVAAHDA 114 (347)
T ss_pred ecccCCceEEEEEecCCcccchhhhccC-----CCeEEEEEccCCceEEeeccC--C---ceEEEEccCCCeeeeeeccc
Confidence 4455666777776443221 11111112 348889999999777544332 2 23444 3556666554433
Q ss_pred CccccccCCCcccceeecCCCC--EEEEEeecCCCCCCCccCCCCCCC--CCCcCCCCCCCcceeeCCcc--cccCCccC
Q 003886 199 TVHGSVYADGWFEGISWNSDET--LIAYVAEEPSPSKPTFSLGSTKGG--SSDKDCNSWKGQGDWEEDWG--ETYAGKRQ 272 (789)
Q Consensus 199 ~~~g~v~~d~~~~~~~wSpDg~--~la~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~g--~~~~~~~~ 272 (789)
.+ ..+.|=+... -|+..+-+++.+ +|+....... ..++++ .|..|-- -..+....
T Consensus 115 pv----------kt~~wv~~~~~~cl~TGSWDKTlK--fWD~R~~~pv~t~~LPeR-------vYa~Dv~~pm~vVata~ 175 (347)
T KOG0647|consen 115 PV----------KTCHWVPGMNYQCLVTGSWDKTLK--FWDTRSSNPVATLQLPER-------VYAADVLYPMAVVATAE 175 (347)
T ss_pred ce----------eEEEEecCCCcceeEeccccccee--ecccCCCCeeeeeeccce-------eeehhccCceeEEEecC
Confidence 33 6677766554 455555555433 3332111110 011110 1111100 01122345
Q ss_pred ceEEEEEccCCce--EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 273 PSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 273 ~~l~v~d~~~g~~--~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
.+|.+++++.+.. +++. .+-......++..+|.+. .+..+-+ .+..|..+|-+.. +++
T Consensus 176 r~i~vynL~n~~te~k~~~-SpLk~Q~R~va~f~d~~~----~alGsiE-------------Grv~iq~id~~~~--~~n 235 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEFKRIE-SPLKWQTRCVACFQDKDG----FALGSIE-------------GRVAIQYIDDPNP--KDN 235 (347)
T ss_pred CcEEEEEcCCCcchhhhhc-CcccceeeEEEEEecCCc----eEeeeec-------------ceEEEEecCCCCc--cCc
Confidence 7788889876543 2332 444557778888898887 5444421 2234555553100 000
Q ss_pred hhhhhcCCCCCCCeeecC---C-CCCccCcceecCCCCEEEEEecC
Q 003886 351 ELELKESSSEDLPVVNLT---E-SISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt---~-~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
-+-++.+-+ . ....+.+.+|.|.=..|+.+..+
T Consensus 236 ---------FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsD 272 (347)
T KOG0647|consen 236 ---------FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSD 272 (347)
T ss_pred ---------eeEEEeccCCCCCCceEEecceEeecccceEEEecCC
Confidence 111222211 1 24457788999987778776655
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=91.44 E-value=10 Score=42.29 Aligned_cols=94 Identities=18% Similarity=0.174 Sum_probs=59.7
Q ss_pred EEEEEccCCceEecc--CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 275 LFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 275 l~v~d~~~g~~~~l~--~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
-.+++...++++++. .++-...+...+++|+.++ ++... .++.|..+|.
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~k----LvlGC---------------~DgSiiLyD~---------- 288 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDK----LVLGC---------------EDGSIILYDT---------- 288 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccce----EEEEe---------------cCCeEEEEEc----------
Confidence 444555555554431 2344456678899999998 77776 2346888885
Q ss_pred hhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 353 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
. .....++...-.....+|.|||..++..+.++ +|.++|..-+..
T Consensus 289 -------~-~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qG-----------elQ~FD~ALspi 333 (545)
T PF11768_consen 289 -------T-RGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQG-----------ELQCFDMALSPI 333 (545)
T ss_pred -------C-CCeeeeeeecccceEEEEcCCCcEEEEEcCCc-----------eEEEEEeecCcc
Confidence 2 23344444444577889999999777666543 588888765443
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=91.43 E-value=6.4 Score=42.77 Aligned_cols=55 Identities=18% Similarity=0.111 Sum_probs=37.1
Q ss_pred CCCCccccCCCEEEEEEEeC-----------------CeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCE
Q 003886 446 ILSNPWLSDGCTMLLSSIWG-----------------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDN 501 (789)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~~-----------------~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~ 501 (789)
...+.|.|||+ ||++.... ....+++++.++++.+.+...........|+++|+.
T Consensus 126 ~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l 197 (367)
T TIGR02604 126 LNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDV 197 (367)
T ss_pred ccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCE
Confidence 35788999996 77754421 014699999998888877655443344577777654
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=91.39 E-value=24 Score=38.30 Aligned_cols=59 Identities=15% Similarity=0.100 Sum_probs=34.0
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 455 GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 455 g~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
+..+|+.+. . ..++.+|..+|+...-..... ......+++.+++... -..++.++..++
T Consensus 241 ~~~vy~~~~-~--g~l~a~d~~tG~~~W~~~~~~---~~~p~~~~~~vyv~~~----~G~l~~~d~~tG 299 (377)
T TIGR03300 241 GGQVYAVSY-Q--GRVAALDLRSGRVLWKRDASS---YQGPAVDDNRLYVTDA----DGVVVALDRRSG 299 (377)
T ss_pred CCEEEEEEc-C--CEEEEEECCCCcEEEeeccCC---ccCceEeCCEEEEECC----CCeEEEEECCCC
Confidence 445766543 2 358889999998765433221 1233456676665532 245888887654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=91.38 E-value=1.5 Score=44.72 Aligned_cols=144 Identities=17% Similarity=0.160 Sum_probs=82.4
Q ss_pred cCceEEEEEccCCceEecc---CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc
Q 003886 271 RQPSLFVININSGEVQAVK---GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~---~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (789)
.+..||-...+++ .+.+. ....+......+|+=|.....-.++..+ ....|+++|+
T Consensus 64 ~rvtiy~c~~d~~-ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G---------------~~GvIrVid~----- 122 (385)
T KOG1034|consen 64 NRVTIYECPGDGG-IRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG---------------YLGVIRVIDV----- 122 (385)
T ss_pred cEEEEEEECCccc-eeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec---------------ceeEEEEEec-----
Confidence 4455666555442 23221 1112335667889888663222233333 2347999998
Q ss_pred hhhhhhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeE
Q 003886 348 EASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v 426 (789)
..++ ...+-.+.+.+...++-|+--+|+....++ ..|.+||+++..-..+-.+.
T Consensus 123 ------------~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD----------~svRlwnI~~~~Cv~VfGG~--- 177 (385)
T KOG1034|consen 123 ------------VSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD----------HSVRLWNIQTDVCVAVFGGV--- 177 (385)
T ss_pred ------------chhhhccceeccCccchhhhcCCCCCcEEEEecCC----------ceEEEEeccCCeEEEEeccc---
Confidence 3333 456777778899999999987777666554 25888998774432221111
Q ss_pred EeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003886 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (789)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~d 474 (789)
+. +...+.++.|+.||.+|+ +...+....+|+++
T Consensus 178 -------eg------HrdeVLSvD~~~~gd~i~-ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 178 -------EG------HRDEVLSVDFSLDGDRIA-SCGMDHSLKLWRLN 211 (385)
T ss_pred -------cc------ccCcEEEEEEcCCCCeee-ccCCcceEEEEecC
Confidence 10 112456778999999653 33333445566665
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.28 E-value=16 Score=40.96 Aligned_cols=201 Identities=10% Similarity=0.115 Sum_probs=108.2
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
.+-.+.+.|---+++-.-..+ . ..|| .+....+-+++.... .....|=+--++|+..+.+...+
T Consensus 15 RVKsVd~HPtePw~la~LynG--~---V~IWnyetqtmVksfeV~~~P---------vRa~kfiaRknWiv~GsDD~~Ir 80 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNG--D---VQIWNYETQTMVKSFEVSEVP---------VRAAKFIARKNWIVTGSDDMQIR 80 (794)
T ss_pred ceeeeecCCCCceEEEeeecC--e---eEEEecccceeeeeeeecccc---------hhhheeeeccceEEEecCCceEE
Confidence 466777888877776543332 2 4555 233444444442211 14455555566666665554332
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc-eEeccCCCCC-CccceEEEeeCCCCCc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKS-LSVGQVVWAPLNEGLH 310 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~~-~~~~~~~wSPDg~~~~ 310 (789)
.|+..+....+.+..++.|.....-.|.--..++...+-.|.+||-+.+= ..+. ..++ -.+-+++|.|.....
T Consensus 81 --Vfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qt--feGH~HyVMqv~fnPkD~nt- 155 (794)
T KOG0276|consen 81 --VFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQT--FEGHEHYVMQVAFNPKDPNT- 155 (794)
T ss_pred --EEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeE--EcCcceEEEEEEecCCCccc-
Confidence 23333344445555666666544443332222334445667778876652 2233 2333 357789999955430
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEe
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s 390 (789)
.+..+ -.+ .+-++.+. ..-...+|..+...+....+-+-|.+=+.++
T Consensus 156 --FaS~s-------------LDr--TVKVWslg----------------s~~~nfTl~gHekGVN~Vdyy~~gdkpylIs 202 (794)
T KOG0276|consen 156 --FASAS-------------LDR--TVKVWSLG----------------SPHPNFTLEGHEKGVNCVDYYTGGDKPYLIS 202 (794)
T ss_pred --eeeee-------------ccc--cEEEEEcC----------------CCCCceeeeccccCcceEEeccCCCcceEEe
Confidence 33333 122 45555551 2233456777766777888888776666666
Q ss_pred cCCCCCCCCccccceeEEeecCCCCC
Q 003886 391 AKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 391 ~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
..+ ...+.+||.++..-
T Consensus 203 gaD---------D~tiKvWDyQtk~C 219 (794)
T KOG0276|consen 203 GAD---------DLTIKVWDYQTKSC 219 (794)
T ss_pred cCC---------CceEEEeecchHHH
Confidence 443 24588999887543
|
|
| >smart00824 PKS_TE Thioesterase | Back alignment and domain information |
|---|
Probab=91.10 E-value=1.5 Score=42.77 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=50.4
Q ss_pred chhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHH-HHHHHHHcCCCCCccEEEEEcCccHHHH
Q 003886 607 LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT-AIDHVIDMGLANPSKVTVVGGSHGGFLT 685 (789)
Q Consensus 607 ~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~-~i~~l~~~~~~d~~rv~l~G~S~GG~~a 685 (789)
...|......|.. .+.|+.++.+|. +... . ....++++.. .++.+.+. ....++.++|||+||.++
T Consensus 12 ~~~~~~~~~~l~~-~~~v~~~~~~g~---~~~~--~-----~~~~~~~~~~~~~~~l~~~--~~~~~~~l~g~s~Gg~~a 78 (212)
T smart00824 12 PHEYARLAAALRG-RRDVSALPLPGF---GPGE--P-----LPASADALVEAQAEAVLRA--AGGRPFVLVGHSSGGLLA 78 (212)
T ss_pred HHHHHHHHHhcCC-CccEEEecCCCC---CCCC--C-----CCCCHHHHHHHHHHHHHHh--cCCCCeEEEEECHHHHHH
Confidence 3456555566644 589999998773 2211 0 1122344333 23333332 235679999999999999
Q ss_pred HHHHHh---CCCceeEEEEeCC
Q 003886 686 THLIGQ---APDKFVAAAARNP 704 (789)
Q Consensus 686 ~~~~~~---~p~~~~a~v~~~p 704 (789)
..++.+ .++.+..++...+
T Consensus 79 ~~~a~~l~~~~~~~~~l~~~~~ 100 (212)
T smart00824 79 HAVAARLEARGIPPAAVVLLDT 100 (212)
T ss_pred HHHHHHHHhCCCCCcEEEEEcc
Confidence 877775 3445666666544
|
Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa. |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=91.09 E-value=5.1 Score=42.14 Aligned_cols=93 Identities=10% Similarity=0.051 Sum_probs=50.1
Q ss_pred EEEEEccCCceEeccCCCCCC-ccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhh
Q 003886 275 LFVININSGEVQAVKGIPKSL-SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 353 (789)
Q Consensus 275 l~v~d~~~g~~~~l~~~~~~~-~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~ 353 (789)
+.++.+..+..+.+ -++. -..+++||||++. +.+++++ .+|++...+
T Consensus 134 ~di~s~~~~~~~~~---lGhvSml~dVavS~D~~~-----IitaDRD--------------EkIRvs~yp---------- 181 (390)
T KOG3914|consen 134 FDILSADSGRCEPI---LGHVSMLLDVAVSPDDQF-----IITADRD--------------EKIRVSRYP---------- 181 (390)
T ss_pred eeeecccccCcchh---hhhhhhhheeeecCCCCE-----EEEecCC--------------ceEEEEecC----------
Confidence 33444444555544 2333 4679999999975 5555433 356666653
Q ss_pred hhcCCCCCCCee-ecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCC
Q 003886 354 LKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (789)
Q Consensus 354 ~~~~~~~~~~~~-~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~ 417 (789)
++-... -..++...+..++.-++ ..|+-.+ +..+|++||+.++...
T Consensus 182 ------a~f~IesfclGH~eFVS~isl~~~-~~LlS~s-----------GD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 182 ------ATFVIESFCLGHKEFVSTISLTDN-YLLLSGS-----------GDKTLRLWDITSGKLL 228 (390)
T ss_pred ------cccchhhhccccHhheeeeeeccC-ceeeecC-----------CCCcEEEEecccCCcc
Confidence 222222 12233444556665544 3333322 2357999999887653
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=90.72 E-value=2.7 Score=42.26 Aligned_cols=141 Identities=16% Similarity=0.103 Sum_probs=72.3
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEE--EeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVV--WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~--wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
..|..+|+.+|+...-..... ...... -.++++. ++... ....|+.+|+
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~----v~~~~---------------~~~~l~~~d~-------- 53 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGP--GIGGPVATAVPDGGR----VYVAS---------------GDGNLYALDA-------- 53 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSS--SCSSEEETEEEETTE----EEEEE---------------TTSEEEEEET--------
T ss_pred CEEEEEECCCCCEEEEEECCC--CCCCccceEEEeCCE----EEEEc---------------CCCEEEEEEC--------
Confidence 578899998887654421211 123333 3446664 44442 2347999997
Q ss_pred hhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeee
Q 003886 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~ 430 (789)
.+|+...-.........+. ..++..|++.... .+|+.+|..+|+..-. ...
T Consensus 54 ---------~tG~~~W~~~~~~~~~~~~-~~~~~~v~v~~~~-----------~~l~~~d~~tG~~~W~------~~~-- 104 (238)
T PF13360_consen 54 ---------KTGKVLWRFDLPGPISGAP-VVDGGRVYVGTSD-----------GSLYALDAKTGKVLWS------IYL-- 104 (238)
T ss_dssp ---------TTSEEEEEEECSSCGGSGE-EEETTEEEEEETT-----------SEEEEEETTTSCEEEE------EEE--
T ss_pred ---------CCCCEEEEeecccccccee-eecccccccccce-----------eeeEecccCCcceeee------ecc--
Confidence 5666543222222222222 3345556555522 2699999888765311 000
Q ss_pred eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003886 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (789)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~ 481 (789)
... +..+ .........++..+++... ...|+.+|+.+|++.
T Consensus 105 -~~~-~~~~-----~~~~~~~~~~~~~~~~~~~---~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 105 -TSS-PPAG-----VRSSSSPAVDGDRLYVGTS---SGKLVALDPKTGKLL 145 (238)
T ss_dssp --SS-CTCS-----TB--SEEEEETTEEEEEET---CSEEEEEETTTTEEE
T ss_pred -ccc-cccc-----cccccCceEecCEEEEEec---cCcEEEEecCCCcEE
Confidence 000 0000 0112223334666766543 457899999999884
|
... |
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.72 E-value=26 Score=37.48 Aligned_cols=170 Identities=18% Similarity=0.196 Sum_probs=86.6
Q ss_pred ceEEEEEccC-C-ceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 273 PSLFVININS-G-EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 273 ~~l~v~d~~~-g-~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
..+.+|+..+ . ....+ ......+..+.|+|+++. ++..+. ....+..+++.
T Consensus 134 ~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~----~~~~~~--------------~~~~~~~~~~~------- 186 (466)
T COG2319 134 GTVKLWDLSTPGKLIRTL--EGHSESVTSLAFSPDGKL----LASGSS--------------LDGTIKLWDLR------- 186 (466)
T ss_pred ccEEEEEecCCCeEEEEE--ecCcccEEEEEECCCCCE----EEecCC--------------CCCceEEEEcC-------
Confidence 5688888876 3 33334 233334558999999986 555531 12357777761
Q ss_pred hhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeee
Q 003886 351 ELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~ 430 (789)
.......+..+...+...+|+|+|+.++.....+ ..+.+||...+..... ..
T Consensus 187 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d----------~~i~~wd~~~~~~~~~---------~~ 238 (466)
T COG2319 187 ---------TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD----------GTIRLWDLSTGKLLRS---------TL 238 (466)
T ss_pred ---------CCceEEeeccCCCceEEEEEcCCcceEEEEecCC----------CcEEEEECCCCcEEee---------ec
Confidence 2233444544566788899999998333331221 2355666553222110 00
Q ss_pred eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCC
Q 003886 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~ 509 (789)
. +.. ... ...|++++..+ +.....+...+|.+.........+......+....+.+++..++. .+..
T Consensus 239 ~--------~~~-~~~-~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~d 305 (466)
T COG2319 239 S--------GHS-DSV-VSSFSPDGSLL-ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS-GSSD 305 (466)
T ss_pred C--------CCC-cce-eEeECCCCCEE-EEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE-eeCC
Confidence 0 000 000 11688998544 455555666666554322212333111223344466676666666 4333
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.67 E-value=33 Score=38.54 Aligned_cols=169 Identities=14% Similarity=0.147 Sum_probs=90.1
Q ss_pred eeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEecCCCccccc
Q 003886 126 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHVPQTVHGSV 204 (789)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~g~v 204 (789)
.-+|.+++.. ...+..++..++ ..+...+..|.--+++..+++- ++.+|+ .++........+..| .|
T Consensus 76 D~~IrVfnyn-t~ekV~~FeAH~-----DyIR~iavHPt~P~vLtsSDDm-----~iKlW~we~~wa~~qtfeGH~H-yV 143 (794)
T KOG0276|consen 76 DMQIRVFNYN-TGEKVKTFEAHS-----DYIRSIAVHPTLPYVLTSSDDM-----TIKLWDWENEWACEQTFEGHEH-YV 143 (794)
T ss_pred CceEEEEecc-cceeeEEeeccc-----cceeeeeecCCCCeEEecCCcc-----EEEEeeccCceeeeeEEcCcce-EE
Confidence 3455555542 233344454444 4577888999888887766553 677773 333222222222222 22
Q ss_pred cCCCcccceeecC-CCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcc--cccCCccCceEEEEEcc
Q 003886 205 YADGWFEGISWNS-DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWG--ETYAGKRQPSLFVININ 281 (789)
Q Consensus 205 ~~d~~~~~~~wSp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g--~~~~~~~~~~l~v~d~~ 281 (789)
..+.|.| |-...|..+-+.+.+ .|...........+.+..-+....|-+... ..+++..+..|.+||-+
T Consensus 144 ------Mqv~fnPkD~ntFaS~sLDrTVK--VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ 215 (794)
T KOG0276|consen 144 ------MQVAFNPKDPNTFASASLDRTVK--VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ 215 (794)
T ss_pred ------EEEEecCCCccceeeeeccccEE--EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecc
Confidence 7889999 567778777777654 344322222223333333333333433221 23445567789999998
Q ss_pred CCceEeccCCCCCC-ccceEEEeeCCCCCccEEEEEeecCC
Q 003886 282 SGEVQAVKGIPKSL-SVGQVVWAPLNEGLHQYLVFVGWSSE 321 (789)
Q Consensus 282 ~g~~~~l~~~~~~~-~~~~~~wSPDg~~~~~~l~f~~~~~~ 321 (789)
+....+. ..++. .+..+.|.|.=. |+.++.+++
T Consensus 216 tk~CV~T--LeGHt~Nvs~v~fhp~lp-----iiisgsEDG 249 (794)
T KOG0276|consen 216 TKSCVQT--LEGHTNNVSFVFFHPELP-----IIISGSEDG 249 (794)
T ss_pred hHHHHHH--hhcccccceEEEecCCCc-----EEEEecCCc
Confidence 8764433 23333 456667777544 555554443
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=90.65 E-value=26 Score=37.30 Aligned_cols=98 Identities=20% Similarity=0.181 Sum_probs=52.1
Q ss_pred CCccCcceecCCCCEEEEEecCCCCCCCCcc-----ccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccC
Q 003886 371 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHS-----ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 445 (789)
Q Consensus 371 ~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~-----~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~ 445 (789)
+......+++|||+.|+.+....-...|... ...+|+.+|..+.+.. ... -..++...+... ....
T Consensus 146 N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~--~~~--~~y~ld~~~~~~-----~~~~ 216 (326)
T PF13449_consen 146 NRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEP--VAE--YAYPLDPPPTAP-----GDNG 216 (326)
T ss_pred CCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCcc--ceE--EEEeCCcccccc-----CCCC
Confidence 3457788999999977666544321112111 1256888887663321 000 011111100000 1124
Q ss_pred CCCCccccCCCEEEEEEEe----CCeEEEEEEECCC
Q 003886 446 ILSNPWLSDGCTMLLSSIW----GSSQVIISVNVSS 477 (789)
Q Consensus 446 ~~~~~ws~Dg~~l~~~~~~----~~~~~l~~~dl~t 477 (789)
+..+.+.+|++.|++.... ....+||.+++..
T Consensus 217 isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 217 ISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred ceeEEEECCCcEEEEEccCCCCccceEEEEEEEccc
Confidence 5677888999866555442 3467899999753
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.64 E-value=1.1 Score=50.31 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=58.6
Q ss_pred ceEEEEEccCCc-eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 273 PSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 273 ~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
..|.+||++.++ ++.| +..-..+-.+.|+|=|.. |.+|.. .+++.++|..
T Consensus 92 gtiK~wDleeAk~vrtL--tgh~~~~~sv~f~P~~~~------~a~gSt-------------dtd~~iwD~R-------- 142 (825)
T KOG0267|consen 92 GTIKVWDLEEAKIVRTL--TGHLLNITSVDFHPYGEF------FASGST-------------DTDLKIWDIR-------- 142 (825)
T ss_pred Cceeeeehhhhhhhhhh--hccccCcceeeeccceEE------eccccc-------------cccceehhhh--------
Confidence 578999998876 4555 333445667889997764 344322 2356666652
Q ss_pred hhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 352 LELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
..|-...--.+.+.....+|+|||++++-... ...+.+||+..|+.
T Consensus 143 --------k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-----------d~tvki~d~~agk~ 188 (825)
T KOG0267|consen 143 --------KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-----------DNTVKIWDLTAGKL 188 (825)
T ss_pred --------ccCceeeecCCcceeEEEeecCCCceeeccCC-----------cceeeeeccccccc
Confidence 12222233334555777899999998764332 23577888766544
|
|
| >PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.32 Score=47.33 Aligned_cols=85 Identities=18% Similarity=0.146 Sum_probs=53.4
Q ss_pred cEEEEEcCCCCCCCCch-hhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC----C---
Q 003886 622 YSLLIVNYRGSLGFGEE-ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA----P--- 693 (789)
Q Consensus 622 y~V~~~d~rGs~G~G~~-~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~----p--- 693 (789)
..|++|=||-..-.... ...............|+.++.+|.+++- -+...++|.|||.|+.+...++-+. |
T Consensus 46 ~~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~-n~GRPfILaGHSQGs~~l~~LL~e~~~~~pl~~ 124 (207)
T PF11288_consen 46 CNVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANY-NNGRPFILAGHSQGSMHLLRLLKEEIAGDPLRK 124 (207)
T ss_pred CccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhc-CCCCCEEEEEeChHHHHHHHHHHHHhcCchHHh
Confidence 68999999843211111 0000011222334789999999988873 2345899999999999999998753 2
Q ss_pred CceeEEEEeCCccc
Q 003886 694 DKFVAAAARNPLCN 707 (789)
Q Consensus 694 ~~~~a~v~~~pv~~ 707 (789)
.++.|-+...++..
T Consensus 125 rLVAAYliG~~v~~ 138 (207)
T PF11288_consen 125 RLVAAYLIGYPVTV 138 (207)
T ss_pred hhheeeecCccccH
Confidence 24455555555543
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.45 E-value=10 Score=42.99 Aligned_cols=108 Identities=15% Similarity=0.073 Sum_probs=71.7
Q ss_pred eeCCcccccCCccCceEEEEEccCCceEecc-CCCCC-CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcc
Q 003886 259 WEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 336 (789)
Q Consensus 259 ~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~-~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~ 336 (789)
.++.|+-....-.+..|.++|+++|+.++.. +..++ ...--+...|.|-+ |+-.. .+ ..
T Consensus 604 Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY----~atSc-------------sd--kt 664 (1080)
T KOG1408|consen 604 VDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIY----LATSC-------------SD--KT 664 (1080)
T ss_pred eCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccE----EEEee-------------cC--Cc
Confidence 3444544444445677889999999877662 22221 23335566777665 55433 22 36
Q ss_pred eEEEecccccchhhhhhhhcCCCCCCCe-eecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 337 LYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 337 l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
|..+|. -++++ .+++.+...++...|++|=|.|+-++.+. -|++|.++.
T Consensus 665 l~~~Df-----------------~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDg-----------CIFvW~lp~ 714 (1080)
T KOG1408|consen 665 LCFVDF-----------------VSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDG-----------CIFVWKLPL 714 (1080)
T ss_pred eEEEEe-----------------ccchhhhhhcCcchheeeeeecccchhheeecCCc-----------eEEEEECch
Confidence 888887 55664 47788888899999999999998877553 488888765
|
|
| >PRK13614 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=90.38 E-value=13 Score=42.40 Aligned_cols=56 Identities=9% Similarity=0.118 Sum_probs=36.3
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEE
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 225 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~ 225 (789)
.+.+++.|+||+.+|++... ...++..+.++..+.+..- ... ..++|.++| ++..+
T Consensus 344 ~~~s~avS~~g~~~A~~~~~---~~~l~~~~~g~~~~~~~~g-~~L----------t~PS~d~~g-~vWtv 399 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGS---RTTLYTVSPGQPARALTSG-STL----------TRPSFSPQD-WVWTA 399 (573)
T ss_pred cccceeecCCCceEEEecCC---CcEEEEecCCCcceeeecC-CCc----------cCCcccCCC-CEEEe
Confidence 46688999999999998432 2356656655544444432 223 689999998 55443
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=90.35 E-value=22 Score=36.02 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=24.9
Q ss_pred CccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 372 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 372 ~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
..+.....||||+.||.+...+ .|.+|++++
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG-----------~lsLW~iPs 260 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSG-----------SLSLWEIPS 260 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCC-----------eEEEEecCc
Confidence 3467788999999999888653 588898876
|
|
| >PRK13613 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=90.32 E-value=14 Score=42.71 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=49.1
Q ss_pred ccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeec--CCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCc
Q 003886 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW--PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 450 (789)
Q Consensus 373 ~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~--~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ 450 (789)
.+...+.|+||-+++.+.... +..+|++--+ ..++.+.++. ...+.. .. ..+..+.
T Consensus 456 ~I~~lrvSrDG~RvAvv~~~~--------g~~~v~va~V~R~~~G~~~l~~----~~~l~~-----~l-----~~v~~~~ 513 (599)
T PRK13613 456 RVVAVRVARDGVRVALIVEKD--------GRRSLQIGRIVRDAKAVVSVEE----FRSLAP-----EL-----EDVTDMS 513 (599)
T ss_pred EeEEEEECCCccEEEEEEecC--------CCcEEEEEEEEeCCCCcEEeec----cEEecc-----CC-----CccceeE
Confidence 588899999999999998653 2234555433 2222222211 111100 00 1245778
Q ss_pred cccCCCEEEEE-EEeCCeEEEEEEECCCCcE
Q 003886 451 WLSDGCTMLLS-SIWGSSQVIISVNVSSGEL 480 (789)
Q Consensus 451 ws~Dg~~l~~~-~~~~~~~~l~~~dl~tg~~ 480 (789)
|..++. |++. ....+...+|.+++++...
T Consensus 514 W~~~~s-L~Vlg~~~~~~~~v~~v~vdG~~~ 543 (599)
T PRK13613 514 WAGDSQ-LVVLGREEGGVQQARYVQVDGSTP 543 (599)
T ss_pred EcCCCE-EEEEeccCCCCcceEEEecCCcCc
Confidence 998876 5554 3444577799999876544
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.27 E-value=7.1 Score=38.38 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=34.6
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEee
Q 003886 448 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLT 496 (789)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s 496 (789)
.+...|....|+|.+ |...+|.+|+++|++++...++.+|......
T Consensus 119 am~ldP~enSi~~Ag---GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 119 AMWLDPSENSILFAG---GDGVIYQVDLEDGRIQREYRGHTDYVHSVVG 164 (325)
T ss_pred eeEeccCCCcEEEec---CCeEEEEEEecCCEEEEEEcCCcceeeeeee
Confidence 344456666787764 7778999999999999999998877554444
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=90.27 E-value=31 Score=37.51 Aligned_cols=63 Identities=11% Similarity=0.107 Sum_probs=33.0
Q ss_pred CCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 454 DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 454 Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
++.+||+.. ....|+.+|..+|+...-...............++.++....+ ..++.++..++
T Consensus 278 ~~~~vyv~~---~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~----G~l~~~d~~tG 340 (377)
T TIGR03300 278 DDNRLYVTD---ADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFE----GYLHWLSREDG 340 (377)
T ss_pred eCCEEEEEC---CCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCC----CEEEEEECCCC
Confidence 456677653 3346899999899765322111111111222345655554322 24777776544
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=89.82 E-value=39 Score=38.07 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=33.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEE
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYV 225 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~ 225 (789)
+.+...+|-| |+.+++...++ +....|+ +++.... .+-.+..+.| ....|+|+..-++..
T Consensus 101 nAifDl~wap-ge~~lVsasGD----sT~r~Wdvk~s~l~G~-~~~~GH~~Sv------kS~cf~~~n~~vF~t 162 (720)
T KOG0321|consen 101 NAIFDLKWAP-GESLLVSASGD----STIRPWDVKTSRLVGG-RLNLGHTGSV------KSECFMPTNPAVFCT 162 (720)
T ss_pred ceeEeeccCC-CceeEEEccCC----ceeeeeeeccceeecc-eeeccccccc------chhhhccCCCcceee
Confidence 4578889999 77665544333 3445552 2222221 1122333444 788899998755443
|
|
| >cd00519 Lipase_3 Lipase (class 3) | Back alignment and domain information |
|---|
Probab=89.62 E-value=0.55 Score=47.27 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC-----CCceeEEEEeCCcc
Q 003886 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLC 706 (789)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~-----p~~~~a~v~~~pv~ 706 (789)
+++...+..++++ ....+|.++|||+||.+|..++... +..+.+....+|-.
T Consensus 112 ~~~~~~~~~~~~~--~p~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~~~tFg~P~v 168 (229)
T cd00519 112 NQVLPELKSALKQ--YPDYKIIVTGHSLGGALASLLALDLRLRGPGSDVTVYTFGQPRV 168 (229)
T ss_pred HHHHHHHHHHHhh--CCCceEEEEccCHHHHHHHHHHHHHHhhCCCCceEEEEeCCCCC
Confidence 3444445544444 3467899999999999999877642 33567777777654
|
Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=89.26 E-value=38 Score=37.12 Aligned_cols=63 Identities=13% Similarity=0.069 Sum_probs=32.5
Q ss_pred CCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 454 DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 454 Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
++.+||+... ...|+.+|..+|+...-...............++.+++.. .. ..++.++..++
T Consensus 293 ~~~~vy~~~~---~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~-~~---G~l~~ld~~tG 355 (394)
T PRK11138 293 DGGRIYLVDQ---NDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGD-SE---GYLHWINREDG 355 (394)
T ss_pred ECCEEEEEcC---CCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEe-CC---CEEEEEECCCC
Confidence 4556877643 3469999999997643222111011111122355555433 22 34777776654
|
|
| >PLN02606 palmitoyl-protein thioesterase | Back alignment and domain information |
|---|
Probab=89.20 E-value=3.9 Score=42.20 Aligned_cols=103 Identities=18% Similarity=0.204 Sum_probs=59.0
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHH-CCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (789)
.+.|+| +.||-+.+.....+....+.+.+ .|+-+..+. .|. +. ...+.....+.+..+.+.+.+.+..
T Consensus 25 ~~~PvV-iwHGlgD~~~~~~~~~~~~~i~~~~~~pg~~v~-ig~---~~------~~s~~~~~~~Qv~~vce~l~~~~~L 93 (306)
T PLN02606 25 LSVPFV-LFHGFGGECSNGKVSNLTQFLINHSGYPGTCVE-IGN---GV------QDSLFMPLRQQASIACEKIKQMKEL 93 (306)
T ss_pred CCCCEE-EECCCCcccCCchHHHHHHHHHhCCCCCeEEEE-ECC---Cc------ccccccCHHHHHHHHHHHHhcchhh
Confidence 345655 56997654444455555666642 366555554 231 11 0111111123444455555543333
Q ss_pred CCccEEEEEcCccHHHHHHHHHhCCC--ceeEEEEeCC
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNP 704 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~~p~--~~~a~v~~~p 704 (789)
. +-+.++|+|.||.++=.++.+.|+ .++-.|..++
T Consensus 94 ~-~G~naIGfSQGglflRa~ierc~~~p~V~nlISlgg 130 (306)
T PLN02606 94 S-EGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLGG 130 (306)
T ss_pred c-CceEEEEEcchhHHHHHHHHHCCCCCCcceEEEecC
Confidence 3 459999999999999999988876 4777776654
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.12 E-value=26 Score=35.12 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=26.3
Q ss_pred CCCCccCcceecCCCCE-EEEEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 369 ESISSAFFPRFSPDGKF-LVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 369 ~~~~~~~~p~~SpDG~~-la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
.+.|......|||-|-. |+|.+.. ...+++.|+.+...
T Consensus 248 ~hnGa~R~c~Fsl~g~lDLLf~sEh----------fs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 248 HHNGAFRVCRFSLYGLLDLLFISEH----------FSRVHVVDTRNYVN 286 (344)
T ss_pred CCCCceEEEEecCCCcceEEEEecC----------cceEEEEEcccCce
Confidence 35778889999986642 5666643 34689999877544
|
|
| >TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2 | Back alignment and domain information |
|---|
Probab=89.09 E-value=2 Score=46.76 Aligned_cols=112 Identities=20% Similarity=0.175 Sum_probs=72.9
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCc-EEEEEcCCCCCCCCchhhccCCCCCCcccH-HHHHHHHHHHHHc
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY-SLLIVNYRGSLGFGEEALQSLPGKVGSQDV-NDVLTAIDHVIDM 665 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy-~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~-~D~~~~i~~l~~~ 665 (789)
..-|.|+.|+.-|.-. ...|.. +-.+...|. ..+.-|.|--+ .+| -.|..+. +.+.+.|+..++.
T Consensus 285 GD~KPPL~VYFSGyR~---aEGFEg-y~MMk~Lg~PfLL~~DpRleG---GaF------YlGs~eyE~~I~~~I~~~L~~ 351 (511)
T TIGR03712 285 GDFKPPLNVYFSGYRP---AEGFEG-YFMMKRLGAPFLLIGDPRLEG---GAF------YLGSDEYEQGIINVIQEKLDY 351 (511)
T ss_pred cCCCCCeEEeeccCcc---cCcchh-HHHHHhcCCCeEEeecccccc---cee------eeCcHHHHHHHHHHHHHHHHH
Confidence 4557899999988332 223321 113344554 45677888522 233 1233333 2455556555554
Q ss_pred CCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcC
Q 003886 666 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 714 (789)
Q Consensus 666 ~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~ 714 (789)
-..+.+.+.+.|-|||.+-|+.++++. .-+|+|+.-|..++-.+...
T Consensus 352 LgF~~~qLILSGlSMGTfgAlYYga~l--~P~AIiVgKPL~NLGtiA~n 398 (511)
T TIGR03712 352 LGFDHDQLILSGLSMGTFGALYYGAKL--SPHAIIVGKPLVNLGTIASR 398 (511)
T ss_pred hCCCHHHeeeccccccchhhhhhcccC--CCceEEEcCcccchhhhhcc
Confidence 447899999999999999999999875 36899999999988665443
|
This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=88.81 E-value=9.3 Score=42.54 Aligned_cols=80 Identities=14% Similarity=0.110 Sum_probs=50.5
Q ss_pred CccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCcc
Q 003886 372 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 451 (789)
Q Consensus 372 ~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~w 451 (789)
..+..-++||+-++|+....++ .|.+||...+-.. .+.. .+ -+..++|
T Consensus 260 s~v~~ca~sp~E~kLvlGC~Dg-----------SiiLyD~~~~~t~-~~ka--~~------------------~P~~iaW 307 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDG-----------SIILYDTTRGVTL-LAKA--EF------------------IPTLIAW 307 (545)
T ss_pred CcceEEecCcccceEEEEecCC-----------eEEEEEcCCCeee-eeee--cc------------------cceEEEE
Confidence 3567789999999999988764 5899997553221 1100 11 1235689
Q ss_pred ccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003886 452 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (789)
Q Consensus 452 s~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt 484 (789)
.|||. +++.++..|...+|-+-++.=+.+-+.
T Consensus 308 Hp~ga-i~~V~s~qGelQ~FD~ALspi~~qLls 339 (545)
T PF11768_consen 308 HPDGA-IFVVGSEQGELQCFDMALSPIKMQLLS 339 (545)
T ss_pred cCCCc-EEEEEcCCceEEEEEeecCccceeecc
Confidence 99997 556666777777776555443443333
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=88.70 E-value=29 Score=35.23 Aligned_cols=78 Identities=10% Similarity=0.112 Sum_probs=46.5
Q ss_pred cccCCCCCccccCCCEEEEEEEeCCeEEEEEEECC-CCc-EEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEe
Q 003886 442 YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS-SGE-LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 519 (789)
Q Consensus 442 ~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~-tg~-~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~ 519 (789)
|+..+.++.|..=.-.++.+++-+.+..||-+... .|. .++|...+..+....|..++..++++...... +..+|
T Consensus 149 ~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGS---vRmFD 225 (364)
T KOG0290|consen 149 FCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGS---VRMFD 225 (364)
T ss_pred cCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCc---EEEEE
Confidence 34456788897644446666666777777765532 122 34555555455667788877777777666555 44455
Q ss_pred ecc
Q 003886 520 FVD 522 (789)
Q Consensus 520 ~~~ 522 (789)
+..
T Consensus 226 LR~ 228 (364)
T KOG0290|consen 226 LRS 228 (364)
T ss_pred ecc
Confidence 543
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.51 E-value=14 Score=37.74 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=51.3
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
..--+||+++|++..+. +..+.......-.|.-+ |+.++.++. ...++|+.
T Consensus 294 RTAnlwDVEtge~v~~L-tGHd~ELtHcstHptQr-----LVvTsSrDt--------------TFRLWDFR--------- 344 (481)
T KOG0300|consen 294 RTANLWDVETGEVVNIL-TGHDSELTHCSTHPTQR-----LVVTSSRDT--------------TFRLWDFR--------- 344 (481)
T ss_pred ccceeeeeccCceeccc-cCcchhccccccCCcce-----EEEEeccCc--------------eeEeccch---------
Confidence 44567999999987662 22222334445556544 777764332 34445542
Q ss_pred hhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 353 ELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 353 ~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
+.-. +.....+...+.+..|.-|.+ ++..+.+ ..+.+||+..
T Consensus 345 -------eaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDD-----------rTvKvWdLrN 387 (481)
T KOG0300|consen 345 -------EAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDD-----------RTVKVWDLRN 387 (481)
T ss_pred -------hhcceeeeecccccceeEEEEecCCc-eeecCCC-----------ceEEEeeecc
Confidence 1222 223334455677888887765 4433322 3588888854
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=87.98 E-value=27 Score=39.80 Aligned_cols=158 Identities=9% Similarity=-0.038 Sum_probs=86.0
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-ceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCC
Q 003886 157 SAVVPSPSGSKLLVVRNPENESPIQFELWSQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (789)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~ 235 (789)
.+++.|+||+.+|++... ..+.+...+ ....+.. .... ..++|.++| .+..+ .+..
T Consensus 337 ~s~avS~dg~~~A~v~~~-----~~l~vg~~~~~~~~~~~-~~~L----------t~PS~d~~g-~vWtv-~~g~----- 393 (557)
T PRK13615 337 DAATLSADGRQAAVRNAS-----GVWSVGDGDRDAVLLDT-RPGL----------VAPSLDAQG-YVWST-PASD----- 393 (557)
T ss_pred ccceEcCCCceEEEEcCC-----ceEEEecCCCcceeecc-CCcc----------ccCcCcCCC-CEEEE-eCCC-----
Confidence 678999999999999432 245555333 3333322 2222 689999998 55543 2210
Q ss_pred ccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEecc-CCCCCCccceEEEeeCCCCCccEEE
Q 003886 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLV 314 (789)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~~~~wSPDg~~~~~~l~ 314 (789)
...+... -.+|+...+. .......+..+..|+||-+ ++
T Consensus 394 ------------------------------------~~~l~~~-~~~G~~~~v~v~~~~~~~I~~lrvSrDG~R----~A 432 (557)
T PRK13615 394 ------------------------------------PRGLVAW-GPDGVGHPVAVSWTATGRVVSLEVARDGAR----VL 432 (557)
T ss_pred ------------------------------------ceEEEEe-cCCCceEEeeccccCCCeeEEEEeCCCccE----EE
Confidence 1112221 1233333321 0112235778899999999 88
Q ss_pred EEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC-------CeeecCCCCCccCcceecCCCCEEE
Q 003886 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-------PVVNLTESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-------~~~~Lt~~~~~~~~p~~SpDG~~la 387 (789)
.+....+. .+|++.-+.. .++ ..+.+....+...+..|..|++ |+
T Consensus 433 vi~~~~g~------------~~V~va~V~R---------------~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~-la 484 (557)
T PRK13615 433 VQLETGAG------------PQLLVASIVR---------------DGGVPTSLTTTPLELLASPGTPLDATWVDELD-VA 484 (557)
T ss_pred EEEecCCC------------CEEEEEEEEe---------------CCCcceEeeeccEEcccCcCcceeeEEcCCCE-EE
Confidence 87643321 2455544310 122 2233333344778899999887 55
Q ss_pred EEecCCCCCCCCccccceeEEeecCC
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
.+.... | +..+++++.+.+
T Consensus 485 Vl~~~~----~---~~~~v~~v~v~g 503 (557)
T PRK13615 485 TLTLAP----D---GERQVELHQVGG 503 (557)
T ss_pred EEeccC----C---CCceEEEEECCC
Confidence 555322 1 234577777764
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=87.90 E-value=28 Score=36.21 Aligned_cols=16 Identities=31% Similarity=0.601 Sum_probs=12.7
Q ss_pred ceEEEEEccCCceEec
Q 003886 273 PSLFVININSGEVQAV 288 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l 288 (789)
..|.|+|+.+|+..++
T Consensus 88 ~glIV~dl~~~~s~Rv 103 (287)
T PF03022_consen 88 PGLIVYDLATGKSWRV 103 (287)
T ss_dssp CEEEEEETTTTEEEEE
T ss_pred CcEEEEEccCCcEEEE
Confidence 5788888888887666
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.83 E-value=4.5 Score=41.48 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=80.6
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch--hhHHH-----------HHHHHHCCcEEEEEcCCCCCCCCch
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--SYSKS-----------LAFLSSVGYSLLIVNYRGSLGFGEE 638 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~--~~~~~-----------~~~la~~Gy~V~~~d~rGs~G~G~~ 638 (789)
++..+..|+|..... -....|+.+++.|||++.... .|... ...|.. ..++.+|.+-..||.--
T Consensus 12 ~~a~~F~wly~~~~~-~ks~~pl~lwlqGgpGaSstG~GNFeE~GPl~~~~~~r~~TWlk~--adllfvDnPVGaGfSyV 88 (414)
T KOG1283|consen 12 TGAHMFWWLYYATAN-VKSERPLALWLQGGPGASSTGFGNFEELGPLDLDGSPRDWTWLKD--ADLLFVDNPVGAGFSYV 88 (414)
T ss_pred cCceEEEEEeeeccc-cccCCCeeEEecCCCCCCCcCccchhhcCCcccCCCcCCchhhhh--ccEEEecCCCcCceeee
Confidence 456678888875422 235689999999999875322 22211 112222 46788887733444321
Q ss_pred hhccCCCCCCcccHHHHHHHHHHHHH-cCCCCCccEEEEEcCccHHHHHHHHHhCC---------CceeEEEEeCCccch
Q 003886 639 ALQSLPGKVGSQDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAP---------DKFVAAAARNPLCNL 708 (789)
Q Consensus 639 ~~~~~~~~~~~~~~~D~~~~i~~l~~-~~~~d~~rv~l~G~S~GG~~a~~~~~~~p---------~~~~a~v~~~pv~~~ 708 (789)
.....+..-..+-..|+.+.++.+.. ++....-+..|+-.||||-++...+...- -.|.++++..+.+..
T Consensus 89 dg~~~Y~~~~~qia~Dl~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~~aIk~G~i~~nf~~VaLGDSWISP 168 (414)
T KOG1283|consen 89 DGSSAYTTNNKQIALDLVELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALELDDAIKRGEIKLNFIGVALGDSWISP 168 (414)
T ss_pred cCcccccccHHHHHHHHHHHHHHHHhcCccccccceEEEEhhcccchhhhhhhhHHHHHhcCceeecceeEEccCcccCh
Confidence 11111112222224577777766665 46677788999999999999988765321 246677777665543
|
|
| >PLN02517 phosphatidylcholine-sterol O-acyltransferase | Back alignment and domain information |
|---|
Probab=87.79 E-value=1.1 Score=50.32 Aligned_cols=75 Identities=21% Similarity=0.242 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCC-CCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHH
Q 003886 609 SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG-KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH 687 (789)
Q Consensus 609 ~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~-~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~ 687 (789)
.|...++.|++.||. -.|++| ..-+|+.+... .....-+..+...|+.+.+. -...+|.|+||||||.+++.
T Consensus 157 vw~kLIe~L~~iGY~--~~nL~g---APYDWRls~~~le~rd~YF~rLK~lIE~ay~~--nggkKVVLV~HSMGglv~ly 229 (642)
T PLN02517 157 VWAVLIANLARIGYE--EKNMYM---AAYDWRLSFQNTEVRDQTLSRLKSNIELMVAT--NGGKKVVVVPHSMGVLYFLH 229 (642)
T ss_pred eHHHHHHHHHHcCCC--CCceee---cccccccCccchhhhhHHHHHHHHHHHHHHHH--cCCCeEEEEEeCCchHHHHH
Confidence 356788999999997 456555 22334322110 00011134555666665554 23579999999999999998
Q ss_pred HHH
Q 003886 688 LIG 690 (789)
Q Consensus 688 ~~~ 690 (789)
.+.
T Consensus 230 FL~ 232 (642)
T PLN02517 230 FMK 232 (642)
T ss_pred HHH
Confidence 765
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=87.72 E-value=2.6 Score=35.05 Aligned_cols=54 Identities=13% Similarity=0.032 Sum_probs=40.4
Q ss_pred CCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecC
Q 003886 333 RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 412 (789)
Q Consensus 333 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~ 412 (789)
....|+.+|. .+++.+.|-.+.......+.|||++.|++...- ..+|+++-+.
T Consensus 35 ~~GRll~ydp-----------------~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~----------~~Ri~rywl~ 87 (89)
T PF03088_consen 35 PTGRLLRYDP-----------------STKETTVLLDGLYFPNGVALSPDESFVLVAETG----------RYRILRYWLK 87 (89)
T ss_dssp --EEEEEEET-----------------TTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG----------GTEEEEEESS
T ss_pred CCcCEEEEEC-----------------CCCeEEEehhCCCccCeEEEcCCCCEEEEEecc----------CceEEEEEEe
Confidence 3457999998 888888887777778889999999998877643 4578888764
Q ss_pred C
Q 003886 413 T 413 (789)
Q Consensus 413 ~ 413 (789)
+
T Consensus 88 G 88 (89)
T PF03088_consen 88 G 88 (89)
T ss_dssp S
T ss_pred C
Confidence 3
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.32 E-value=74 Score=38.16 Aligned_cols=66 Identities=20% Similarity=0.253 Sum_probs=39.0
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCC--CccccccCCCcccceeecCCCCEEEEEeecC
Q 003886 159 VVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQ--TVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (789)
Q Consensus 159 ~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~ 229 (789)
-..|||.+++++.++... .|.-... ....+-.+.. ..|+..+.++.+..+.|||.|++|+|+.+..
T Consensus 102 ~~~s~d~~~~~~~~~~~~----~~rhs~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp~~~~l~yv~~~n 169 (755)
T KOG2100|consen 102 DLISPDRKYILLGRNYKK----RFRHSYT-AKYHLYDLNTGEKLHPPEYEGSKIQYASWSPLGNDLAYVLHNN 169 (755)
T ss_pred cccChhhhhheeccCccc----ccceeeE-EEEEEEEcCCCCcccCcccCCCeeEEEEEcCCCCEEEEEEecc
Confidence 378999999998776431 1111100 0111111111 2345555555668899999999999998754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 789 | ||||
| 2qzp_A | 562 | Crystal Structure Of Mutation Of An Acylptide Hydro | 4e-11 | ||
| 1ve6_A | 582 | Crystal Structure Of An Acylpeptide HydrolaseESTERA | 5e-11 | ||
| 2hu8_A | 582 | Binding Of Inhibitors By Acylaminoacyl Peptidase Le | 9e-11 | ||
| 3o4j_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 2e-10 | ||
| 3o4h_A | 582 | Structure And Catalysis Of Acylaminoacyl Peptidase | 4e-10 | ||
| 2qr5_A | 582 | Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mut | 6e-10 | ||
| 3azo_A | 662 | Crystal Structure Of Puromycin Hydrolase Length = 6 | 7e-09 | ||
| 2z3w_A | 706 | Prolyl Tripeptidyl Aminopeptidase Mutant E636a Leng | 3e-08 | ||
| 2d5l_A | 706 | Crystal Structure Of Prolyl Tripeptidyl Aminopeptid | 3e-08 | ||
| 2dcm_A | 706 | The Crystal Structure Of S603a Mutated Prolyl Tripe | 6e-08 | ||
| 2ecf_A | 741 | Crystal Structure Of Dipeptidyl Aminopeptidase Iv F | 5e-07 | ||
| 1z68_A | 719 | Crystal Structure Of Human Fibroblast Activation Pr | 4e-06 | ||
| 2bkl_A | 695 | Structural And Mechanistic Analysis Of Two Prolyl E | 8e-06 | ||
| 2gbc_A | 730 | Native Dpp-Iv (Cd26) From Rat Length = 730 | 6e-05 | ||
| 3azp_A | 662 | Crystal Structure Of Puromycin Hydrolase S511a Muta | 8e-05 | ||
| 4hvt_A | 711 | Structure Of A Post-Proline Cleaving Enzyme From Ri | 1e-04 | ||
| 4a5s_A | 740 | Crystal Structure Of Human Dpp4 In Complex With A N | 4e-04 | ||
| 3q8w_A | 732 | A B-Aminoacyl Containing Thiazolidine Derivative An | 5e-04 | ||
| 2g5p_A | 726 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 5e-04 | ||
| 1u8e_A | 728 | Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F Leng | 5e-04 | ||
| 1x70_A | 728 | Human Dipeptidyl Peptidase Iv In Complex With A Bet | 5e-04 | ||
| 1n1m_A | 728 | Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A | 5e-04 | ||
| 2rgu_A | 734 | Crystal Structure Of Complex Of Human Dpp4 And Inhi | 5e-04 | ||
| 2rip_A | 729 | Structure Of Dppiv In Complex With An Inhibitor Len | 5e-04 | ||
| 1r9n_A | 739 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 5e-04 | ||
| 2onc_A | 731 | Crystal Structure Of Human Dpp-4 Length = 731 | 5e-04 | ||
| 3ccb_A | 740 | Crystal Structure Of Human Dpp4 In Complex With A B | 5e-04 | ||
| 2bgr_A | 738 | Crystal Structure Of Hiv-1 Tat Derived Nonapeptides | 5e-04 | ||
| 1j2e_A | 740 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 5e-04 | ||
| 1pfq_A | 731 | Crystal Structure Of Human Apo Dipeptidyl Peptidase | 5e-04 | ||
| 1r9m_A | 733 | Crystal Structure Of Human Dipeptidyl Peptidase Iv | 5e-04 | ||
| 2jid_A | 736 | Human Dipeptidyl Peptidase Iv In Complex With 1-(3, | 5e-04 | ||
| 3nox_A | 753 | Crystal Structure Of Human Dpp-Iv In Complex With S | 5e-04 | ||
| 2qt9_A | 766 | Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A | 5e-04 | ||
| 3qbj_A | 748 | Crystal Structure Of Dipeptidyl Peptidase Iv In Com | 6e-04 | ||
| 2qjr_A | 748 | Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf | 6e-04 | ||
| 1orv_A | 728 | Crystal Structure Of Porcine Dipeptidyl Peptidase I | 8e-04 |
| >pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide HydrolaseESTERASE FROM AEROPYRUM PERNIX K1 Length = 562 | Back alignment and structure |
|
| >pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM Aeropyrum Pernix K1 Length = 582 | Back alignment and structure |
|
| >pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase Length = 582 | Back alignment and structure |
|
| >pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant Length = 582 | Back alignment and structure |
|
| >pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase Length = 662 | Back alignment and structure |
|
| >pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Length = 706 | Back alignment and structure |
|
| >pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase From Porphyromonas Gingivalis Length = 706 | Back alignment and structure |
|
| >pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl Aminopeptidase Complexed With Substrate Length = 706 | Back alignment and structure |
|
| >pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From Stenotrophomonas Maltophilia Length = 741 | Back alignment and structure |
|
| >pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein Alpha Length = 719 | Back alignment and structure |
|
| >pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl Endopeptidases: Role Of Inter-Domain Dynamics In Catalysis And Specificity Length = 695 | Back alignment and structure |
|
| >pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat Length = 730 | Back alignment and structure |
|
| >pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant Length = 662 | Back alignment and structure |
|
| >pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From Rickettsia Typhi Length = 711 | Back alignment and structure |
|
| >pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval Heterocyclic Dpp4 Inhibitor Length = 740 | Back alignment and structure |
|
| >pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv Complex Length = 732 | Back alignment and structure |
|
| >pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv) Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor 21ac Length = 726 | Back alignment and structure |
|
| >pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F Length = 728 | Back alignment and structure |
|
| >pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino Acid Inhibitor Length = 728 | Back alignment and structure |
|
| >pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN INHIBITOR Length = 728 | Back alignment and structure |
|
| >pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor Length = 734 | Back alignment and structure |
|
| >pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor Length = 729 | Back alignment and structure |
|
| >pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution Length = 739 | Back alignment and structure |
|
| >pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4 Length = 731 | Back alignment and structure |
|
| >pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Benzimidazole Derivative Length = 740 | Back alignment and structure |
|
| >pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides Tat(1-9) Bound To The Active Site Of Dipeptidyl Peptidase Iv (Cd26) Length = 738 | Back alignment and structure |
|
| >pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv Length = 740 | Back alignment and structure |
|
| >pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv / Cd26 Length = 731 | Back alignment and structure |
|
| >pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1 Ang. Resolution. Length = 733 | Back alignment and structure |
|
| >pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4- Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine Length = 736 | Back alignment and structure |
|
| >pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With Sa-(+)-(6- (Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1, 2-A]pyrimidin- 2-Yl)(Morpholino)methanone Length = 753 | Back alignment and structure |
|
| >pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl Cyclohexylalanine Inhibitor Length = 766 | Back alignment and structure |
|
| >pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex With Inhibitor Length = 748 | Back alignment and structure |
|
| >pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf Length = 748 | Back alignment and structure |
|
| >pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv (Cd26) Length = 728 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 789 | |||
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 7e-52 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 6e-50 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 2e-30 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 4e-25 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 3e-23 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 2e-21 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 5e-17 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 3e-15 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 8e-14 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 2e-13 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 3e-13 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 9e-13 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 1e-12 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 2e-12 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 4e-12 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 1e-11 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 2e-11 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 7e-11 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 5e-10 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 8e-10 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 2e-09 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 3e-09 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 1e-08 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 2e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-08 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 2e-07 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 3e-07 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 5e-07 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 2e-06 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 3e-06 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 4e-06 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 1e-05 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 2e-05 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 4e-05 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 4e-05 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 1e-04 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 2e-04 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 3e-04 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 3e-04 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 4e-04 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 4e-04 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 5e-04 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 6e-04 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 8e-04 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 8e-04 |
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A Length = 582 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 7e-52
Identities = 99/635 (15%), Positives = 191/635 (30%), Gaps = 138/635 (21%)
Query: 158 AVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNS 217
++ G KLLVV E L+ + K P
Sbjct: 26 SLQGVVDGDKLLVVGFSEGSVNAY--LYDGGETVKLNREPINSVL----------DPHYG 73
Query: 218 DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ--GDWEED-WGETYAGKRQPS 274
+I + +T ++ + K + + G +
Sbjct: 74 VGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDR 133
Query: 275 LFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 334
+ + ++ G ++ ++ P FV G+ +
Sbjct: 134 VALYALDGGGLR------------ELARLP-------GFGFVSDIRGDLIAGLGFFGGGR 174
Query: 335 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 394
+L+ + + L + S SP K L
Sbjct: 175 VSLFTSNL-----SSGGLRV------------FDSGEGSFSSASISPGMKVTAGLE---- 213
Query: 395 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 454
+ L +D + ++ D F ++I +L D
Sbjct: 214 -----TAREARLVTVDPRDGS-----------VEDLELPSKD-FSSYRPTAITWLGYLPD 256
Query: 455 GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQ 514
G +++ G S V I GE + + + L ++ +S P+
Sbjct: 257 GRLAVVARREGRSAVFID-----GERVEAPQG----NHGRVVLWRGKLVTSHTSLSTPPR 307
Query: 515 VKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMK-IPVKG-----VSANL 568
+ + L P R + + + V+ V +
Sbjct: 308 I---VSLPSGEP----LLEGGLP----------EDLRRSIAGSRLVWVESFDGSRVPTYV 350
Query: 569 TK--GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLI 626
+ A P P +V++HGGP + S+ A L++ G+ +++
Sbjct: 351 LESGRAPTPG----------------PTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVM 394
Query: 627 VNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT 686
NYRGS G+GEE + G ++ DV A + GLA+ ++ ++G S+GG++T
Sbjct: 395 PNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTL 452
Query: 687 HLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES-YGSKGKDSFTESPSVEDLTR 745
+ P F A A + + M +D ++E G
Sbjct: 453 CALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQLTG-------------GSREI 499
Query: 746 FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780
S+SPI+H+ ++K P + R P+ L+
Sbjct: 500 MRSRSPINHVDRIKEPLALIHPQNASRTPLKPLLR 534
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A Length = 662 | Back alignment and structure |
|---|
Score = 185 bits (472), Expect = 6e-50
Identities = 103/646 (15%), Positives = 207/646 (32%), Gaps = 111/646 (17%)
Query: 161 PSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVH---GSVYADGWFEGI---- 213
P+ +G LV R + +S L ++V V G +A
Sbjct: 43 PAEAGRATLVRRRADGAE--------ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL 94
Query: 214 --SWNSDETLIAYVAEEPSPSKPT--FSLGSTKGGSSDKDCNSWKGQGDW----EEDWGE 265
+ D+ L A+ + P + P + + GG D + E++
Sbjct: 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADP-VLLPERGEVWCMAEEFTG 153
Query: 266 TYAGKRQPSLFVININSGEVQAVKGIPKSLS-----VGQVVWAPLNEGLHQYLVFVGWSS 320
+ L + ++ + + V +P +G + V++ W
Sbjct: 154 EGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP--DG--RQAVWLAWDH 209
Query: 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFS 380
P ++ + + + + + ++
Sbjct: 210 P----------RMPWEGTELKTARVTEDGRFADTRTLLGGPE---------EAIAQAEWA 250
Query: 381 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG 440
PDG L+ + D + +LHR+D T + + E P
Sbjct: 251 PDGS-LIVAT-----D---RTGWWNLHRVDPATG----------AATQLCRREEEFAGPL 291
Query: 441 LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGD 500
P ++ + V+ ++ SGEL+ + ++ +L T+ G
Sbjct: 292 WTPGMRWFAP---LANGLIAVVHGKGAAVLGILDPESGELVDAAGPWTEWAATL-TVSGT 347
Query: 501 NIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMK-I 559
+ V++SP +V +D + + + + +
Sbjct: 348 RAVGVAASPRTAYEV---VELDTVTGRARTIGARHTD----------PVDPAYYPEPQIR 394
Query: 560 PVKG-----VSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL 614
+ A++ P F + + P +V+ HGGP S + +
Sbjct: 395 TFTAPDGREIHAHIYP----PHSPDFTGPADELP----PYVVMAHGGPTSRVPAVLDLDV 446
Query: 615 AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVT 674
A+ +S G + VNY GS G+G + L G+ G DV D + + G A+ +++
Sbjct: 447 AYFTSRGIGVADVNYGGSTGYGRAYRERLRGRWGVVDVEDCAAVATALAEEGTADRARLA 506
Query: 675 VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSF 734
V GGS GG+ + D + P+ +L D+ S+ D
Sbjct: 507 VRGGSAGGWTAASSLVS-TDVYACGTVLYPVLDLLGWADGGT-HDF------ESRYLDFL 558
Query: 735 TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780
S E R+ ++P++ +V+ P + L G +D P +
Sbjct: 559 IGSFE-EFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPEQCDR 603
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* Length = 318 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 2e-30
Identities = 38/208 (18%), Positives = 70/208 (33%), Gaps = 19/208 (9%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG---- 648
P IV HG S + + GY+ + RG + ++ +G
Sbjct: 83 PAIVKYHGYNASYD--GEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTK 140
Query: 649 ----------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 698
D + A++ + + +++ V GGS GG LT + A
Sbjct: 141 GILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAA 200
Query: 699 AAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV 758
A L N + + + S+ + TE +++ L+ F ++ +V
Sbjct: 201 VADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYF---DIMNLADRV 257
Query: 759 KTPTIFLLGAQDLRVPVSNGLQVIYHIP 786
K P + +G D P S H+
Sbjct: 258 KVPVLMSIGLIDKVTPPSTVFAAYNHLE 285
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} Length = 290 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 4e-25
Identities = 30/189 (15%), Positives = 59/189 (31%), Gaps = 19/189 (10%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P ++ +HG S S +G + + RG G+ +Q++
Sbjct: 29 PGVLFVHGWGGSQHHSLVR--AREAVGLGCICMTFDLRGHEGYASMRQSV----TRAQNL 82
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
+D+ A D + + + + VVG S+GG+L+ P+ LAL
Sbjct: 83 DDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSA-----------LLTRERPVEWLALRS 131
Query: 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 772
+ + S D ++ ++ K + + D+
Sbjct: 132 PALYKDAH-WDQPKVSLNADPDLMDYR-RRALAPGDNLALAACAQYKGDVLLVEAENDVI 189
Query: 773 VPVSNGLQV 781
VP
Sbjct: 190 VPHPVMRNY 198
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} Length = 346 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 3e-23
Identities = 28/200 (14%), Positives = 62/200 (31%), Gaps = 20/200 (10%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG---- 648
P ++ HG + + + + G++++ ++ RG G ++ +
Sbjct: 109 PALIRFHGYSSNSGDWNDKLNYV---AAGFTVVAMDVRGQGGQSQDVGGVTGNTLNGHII 165
Query: 649 ------------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKF 696
D V++M + +V V+G S GG L+ P
Sbjct: 166 RGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPRVR 225
Query: 697 VAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHIS 756
+ L + + + + + D E + E T+ +
Sbjct: 226 KVVSEYPFLSDYKRVWDLDLAKNAYQEITDYFRLFDPRHEREN-EVFTKLGYIDVKNLAK 284
Query: 757 KVKTPTIFLLGAQDLRVPVS 776
++K + +G D P S
Sbjct: 285 RIKGDVLMCVGLMDQVCPPS 304
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* Length = 337 | Back alignment and structure |
|---|
Score = 95.4 bits (237), Expect = 2e-21
Identities = 30/210 (14%), Positives = 60/210 (28%), Gaps = 29/210 (13%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS-------------------- 632
P +V G + F S+GY +++ RG
Sbjct: 96 PCVVQYIGYNGG---RGFPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQ 152
Query: 633 -LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 691
GF + + D + A++ + ++ + GGS GG + +
Sbjct: 153 YPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSAL 212
Query: 692 APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 751
+ LC+ V D + + ++ +D
Sbjct: 213 SKKAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRD-----KEEIVFRTLSYFDG 267
Query: 752 ISHISKVKTPTIFLLGAQDLRVPVSNGLQV 781
++ ++ K P +F +G D P S
Sbjct: 268 VNFAARAKIPALFSVGLMDNICPPSTVFAA 297
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} Length = 446 | Back alignment and structure |
|---|
Score = 83.3 bits (205), Expect = 5e-17
Identities = 25/197 (12%), Positives = 56/197 (28%), Gaps = 15/197 (7%)
Query: 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649
P IV + G + + L+ G++++ + Y LP + +
Sbjct: 172 GPFPGIVDMFGTGGGLL----EYRASLLAGKGFAVMALAYYNYED--------LPKTMET 219
Query: 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709
+ A+++++ V ++G S GG L + A + N+
Sbjct: 220 LHLEYFEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKGITAAVVINGSVANVG 279
Query: 710 LMV---GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLL 766
+ G T P + + + + ++ +FL+
Sbjct: 280 GTLRYKGETLPPVGVNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFLV 339
Query: 767 GAQDLRVPVSNGLQVIY 783
G D
Sbjct: 340 GQDDHNWKSEFYANEAC 356
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} Length = 422 | Back alignment and structure |
|---|
Score = 77.6 bits (190), Expect = 3e-15
Identities = 24/196 (12%), Positives = 58/196 (29%), Gaps = 15/196 (7%)
Query: 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650
P I+ + G + + L+ G++ L + Y LP + +
Sbjct: 157 PFPGIIDIFGIGGGLL----EYRASLLAGHGFATLALAYYNFED--------LPNNMDNI 204
Query: 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-- 708
+ A+ +++ + ++G S G + + + + +
Sbjct: 205 SLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKNVSATVSINGSGISGNT 264
Query: 709 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSV-EDLTRFHSKSPISHISKVKTPTIFLLG 767
A+ + IP Y + + L + + I K + P + ++G
Sbjct: 265 AINYKHSSIPPLGYDLRRIKVAFSGLVDIVDIRNALVGGYKNPSMIPIEKAQGPILLIVG 324
Query: 768 AQDLRVPVSNGLQVIY 783
D Q +
Sbjct: 325 QDDHNWRSELYAQTVS 340
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* Length = 706 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 8e-14
Identities = 66/324 (20%), Positives = 121/324 (37%), Gaps = 58/324 (17%)
Query: 472 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSW 531
+++ G+ +TP L DG II + SP VP+ V KG+ +
Sbjct: 386 CIDIKGGKTKDLTPESGMHRTQLSP-DGSAIIDIFQSP-TVPRKVT---VTNIGKGSHTL 440
Query: 532 LNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQ-KPFEAIFVSSSHKKDCS 590
L +P + + + + P F + KK
Sbjct: 441 LEAKNPDTGYA------MPEIRTGTIMAADGQTPLY---YKLTMPLH--FDPA--KKY-- 485
Query: 591 CDPLIVVLHGGPHSVS-LSSYSKSL----AFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 645
P+IV ++GGPH+ ++ S+ +++ GY++ V+ RGS G Q +
Sbjct: 486 --PVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHR 543
Query: 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705
++G ++ D + +D + + ++ V G S+GGF+TT+L+ D F A P
Sbjct: 544 RLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGP- 602
Query: 706 CNLALMVGTTDIPDWCYVESYGSKGKDS-FTE----SPSVEDLTRFHSKSPISHISKVKT 760
+ DW Y + E +P E+ + + + + +K
Sbjct: 603 -----------VIDWNR---Y-----AIMYGERYFDAPQ-ENPEGYDAANLLKRAGDLKG 642
Query: 761 PTIFLL--GAQDLRVPVSNGLQVI 782
+L GA D V + L +
Sbjct: 643 R--LMLIHGAIDPVVVWQHSLLFL 664
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} Length = 719 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 2e-13
Identities = 100/665 (15%), Positives = 203/665 (30%), Gaps = 136/665 (20%)
Query: 155 GASAVVPSPSGSKL-------LVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYAD 207
+ SP GSKL + ++ + P Q + +E + + VY +
Sbjct: 111 PIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQI-----TFNGRENKIFNGIPDWVYEE 165
Query: 208 GWF---EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWG 264
+ W+ + +AY + P + S G +
Sbjct: 166 EMLATKYALWWSPNGKFLAYAEFNDTD-IPVIAY-SYYGDEQYPRTINIP---------- 213
Query: 265 ETY--AGKRQP--SLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSS 320
Y AG + P +F+I+ + +V + Y ++ W +
Sbjct: 214 --YPKAGAKNPVVRIFIIDTTYP---------AYVGPQEVPVPAMIASSDYYFSWLTWVT 262
Query: 321 ETRKLGIKYCYNRP---CALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAFF 376
+ ++ +++ R L + +E E +
Sbjct: 263 DE-RVCLQWL-KRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVST---- 316
Query: 377 PRFSPDG-KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG 435
P FS D + S K + T+G + +++ V Q +
Sbjct: 317 PVFSYDAISYYKIFSDKDGYKHIHYIKDTV-ENAIQITSGKWE----AINIFRVTQDSLF 371
Query: 436 DCFPG---------LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA 486
+Y SI S P T L
Sbjct: 372 YSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRK-----------------------E 408
Query: 487 ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVK 546
+ + + V P +P D L + + + ++
Sbjct: 409 RCQYYTASFSDYAKYYALVCYGP-GIPISTL---HDGRTDQEIKILEENKELENALKNIQ 464
Query: 547 SLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS 606
+ I K+ V ++ + + + PL++ ++GGP S S
Sbjct: 465 L----PKEEIKKLEVDEITLWY---------KMILPPQFDRSKKY-PLLIQVYGGPCSQS 510
Query: 607 -LSSYSKSLA--FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVI 663
S ++ + S G + +V+ RG+ G++ L ++ K+G +V D +TA+ I
Sbjct: 511 VRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFI 570
Query: 664 DMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV 723
+MG + ++ + G S+GG++++ + F A P + W Y
Sbjct: 571 EMGFIDEKRIAIWGWSYGGYVSSLALASGTGLFKCGIAVAP------------VSSWEYY 618
Query: 724 ESYGSKGKDSFTE----SPSVED-LTRFHSKSPISHISKVKTPTIFLL-GAQDLRVPVSN 777
S +TE P+ +D L + + + ++ + L+ G D V N
Sbjct: 619 ASV-------YTERFMGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHGTADDNVHFQN 671
Query: 778 GLQVI 782
Q+
Sbjct: 672 SAQIA 676
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* Length = 251 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 3e-13
Identities = 27/207 (13%), Positives = 55/207 (26%), Gaps = 31/207 (14%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS---------LGFGEEALQSL 643
PL +++HG L+ +G + L + G +
Sbjct: 28 PLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDHTLFKW----- 82
Query: 644 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 703
+ ++L +D+ + + + G S GG D A +
Sbjct: 83 --------LTNILAVVDYAKKLDFVTD--IYMAGHSQGGLSVMLAAAMERDIIKALIPLS 132
Query: 704 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESP----SVEDLTRFHSKSPISHISKVK 759
P + + T ++ + D++ V + K
Sbjct: 133 PAAMIPEIARTGELLGLKFDPENIPDELDAWDGRKLKGNYVRVAQTI---RVEDFVDKYT 189
Query: 760 TPTIFLLGAQDLRVPVSNGLQVIYHIP 786
P + + G QD VP +
Sbjct: 190 KPVLIVHGDQDEAVPYEASVAFSKQYK 216
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... Length = 740 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 9e-13
Identities = 39/200 (19%), Positives = 79/200 (39%), Gaps = 30/200 (15%)
Query: 593 PLIVVLHGGPHSVS-LSSYSKSLA--FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649
PL++ ++ GP S + + + A S+ + + RGS G++ + ++ ++G+
Sbjct: 503 PLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGT 562
Query: 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709
+V D + A MG + ++ + G S+GG++T+ ++G F A P
Sbjct: 563 FEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAP----- 617
Query: 710 LMVGTTDIPDW-----CYVESY-GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 763
+ W Y E Y G + ++L + + + +S K
Sbjct: 618 -------VSRWEYYDSVYTERYMGLPTPE--------DNLDHYRNSTVMSRAENFKQVEY 662
Query: 764 FLL-GAQDLRVPVSNGLQVI 782
L+ G D V Q+
Sbjct: 663 LLIHGTADDNVHFQQSAQIS 682
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} Length = 405 | Back alignment and structure |
|---|
Score = 69.3 bits (169), Expect = 1e-12
Identities = 33/207 (15%), Positives = 69/207 (33%), Gaps = 29/207 (14%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
++V+ GG S + Y++L+V+ G G+ Q L +V ++
Sbjct: 160 DTLIVVGGGDTSRE-DLFYMLGYSGWEHDYNVLMVDLPG---QGKNPNQGLHFEVDARAA 215
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL---- 708
I ++D A K+ + G S GG+ T + + A A P+ ++
Sbjct: 216 ------ISAILDWYQAPTEKIAIAGFSGGGYFTAQAVEKDKR-IKAWIASTPIYDVAEVF 268
Query: 709 -ALMVGTTDIPDWCYVESYGSKGKDS-------------FTESPSVEDLTRFHSKSPISH 754
P + F + + + ++ I
Sbjct: 269 RISFSTALKAPKTILKWGSKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVD 328
Query: 755 ISKVKTPTIFLLGAQDLRVPVSNGLQV 781
+K+ P++FL+GA + + +
Sbjct: 329 YNKIDVPSLFLVGAGEDSELMRQSQVL 355
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 Length = 386 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 2e-12
Identities = 33/196 (16%), Positives = 60/196 (30%), Gaps = 21/196 (10%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P +++L G + + + G + + G GE K + D
Sbjct: 153 PAVIMLGGLESTKE--ESFQMENLVLDRGMATATFDGPGQ---GE----MFEYKRIAGDY 203
Query: 653 NDVLTAI-DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
+A+ D + + + V+G S GG P A + +L
Sbjct: 204 EKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPR-LAACISWGGFSDLDYW 262
Query: 712 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK-SPISHISKVKTPTIFLLGAQD 770
T + + + E H+ +S++ PT L G D
Sbjct: 263 DLETPLTKESWKYVSKVDTLE--------EARLHVHAALETRDVLSQIACPTYILHGVHD 314
Query: 771 LRVPVSNGLQVIYHIP 786
VP+S V+ +P
Sbjct: 315 -EVPLSFVDTVLELVP 329
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A Length = 380 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 4e-12
Identities = 24/138 (17%), Positives = 48/138 (34%), Gaps = 10/138 (7%)
Query: 593 PLIVVLHGGPHSVS----------LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQS 642
PL+V LHG + + + +L + +
Sbjct: 175 PLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSWSTLFTDR 234
Query: 643 LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR 702
+ + V+ I ++D + +++ + G S GG+ T I + P+ F AA
Sbjct: 235 ENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPI 294
Query: 703 NPLCNLALMVGTTDIPDW 720
+++ + DIP W
Sbjct: 295 CGGGDVSKVERIKDIPIW 312
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A Length = 415 | Back alignment and structure |
|---|
Score = 66.6 bits (162), Expect = 1e-11
Identities = 29/192 (15%), Positives = 62/192 (32%), Gaps = 14/192 (7%)
Query: 595 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 654
+V++ G S+ + L+ ++L V+ G + L ++D +
Sbjct: 195 VVIVSAGLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSV---GYSSKYPL-----TEDYSR 246
Query: 655 VLTA-IDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG 713
+ A ++ + + + +V ++G GG L +K A +
Sbjct: 247 LHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASP 306
Query: 714 TT--DIPDWCYVESYGSK-GKDSFTESPSVEDLTRF-HSKSPISHISKVKTPTIFLLGAQ 769
+P Y++ S+ GK + + K K P + +
Sbjct: 307 QKLQQMPKM-YLDVLASRLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEG 365
Query: 770 DLRVPVSNGLQV 781
D P S+ V
Sbjct: 366 DPVSPYSDNQMV 377
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} Length = 741 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 2e-11
Identities = 67/331 (20%), Positives = 125/331 (37%), Gaps = 63/331 (19%)
Query: 472 SVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSW 531
+V + G+ R++ A S S + + S+ P + +AN +
Sbjct: 410 AVPLQGGQPQRLSKAPGMHSASFAR-NASVYVDSWSNN-STPPQIE---LFRANGEKIAT 464
Query: 532 LNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGA-------QKPFEAIFVSSS 584
L + + ++ + PV+ + G KP F +
Sbjct: 465 LVEN-------DLADPKHPYARYREAQRPVEFGTLTAADGKTPLNYSVIKPAG--FDPA- 514
Query: 585 HKKDCSCDPLIVVLHGGPHS--V----SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEE 638
K+ P+ V ++GGP S V +L+ GY + ++ RG+ G +
Sbjct: 515 -KRY----PVAVYVYGGPASQTVTDSWPGRGDHLFNQYLAQQGYVVFSLDNRGTPRRGRD 569
Query: 639 ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 698
+L GK G+ +V D L + + +P+++ V G S+GG++T L+ +A D +
Sbjct: 570 FGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYAC 629
Query: 699 AAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDS-FTE----SPSVEDLTRFHSKSPIS 753
A P + DW Y DS +TE P+ + + ++
Sbjct: 630 GVAGAP------------VTDWGL---Y-----DSHYTERYMDLPA-RNDAGYREARVLT 668
Query: 754 HISKVKTPTIFLL--GAQDLRVPVSNGLQVI 782
HI +++P LL G D V +N ++
Sbjct: 669 HIEGLRSP--LLLIHGMADDNVLFTNSTSLM 697
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 Length = 723 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 7e-11
Identities = 38/202 (18%), Positives = 81/202 (40%), Gaps = 32/202 (15%)
Query: 593 PLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649
PL++V+ G P S S++ S +SS G ++ + RGS G + L + ++G
Sbjct: 497 PLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGL 556
Query: 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPL 705
+ D + A+ ++ + ++V V G +GG+L+T+++ + F +A +P
Sbjct: 557 LEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSP- 615
Query: 706 CNLALMVGTTDIPDWCYVESYGSKGKDSFTE----SPSVEDLTRFHSKSPISHISKVKTP 761
I D+ S F+E D + +S ++
Sbjct: 616 -----------ITDFKLYASA-------FSERYLGLHG-LDNRAYEMTKVAHRVSALEEQ 656
Query: 762 TIFLL-GAQDLRVPVSNGLQVI 782
++ D ++ + ++I
Sbjct: 657 QFLIIHPTADEKIHFQHTAELI 678
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 Length = 305 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 5e-10
Identities = 28/204 (13%), Positives = 57/204 (27%), Gaps = 22/204 (10%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG---- 648
I++ G + + ++ +LS+ G+ + + +G S G +
Sbjct: 36 NTILIASG--FARRMDHFAGLAEYLSTNGFHVFRYDSLHHVG------LS-SGSIDEFTM 86
Query: 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKF-VAAAARNPLCN 707
+ N + T + G + ++ S + +I F + A L +
Sbjct: 87 TTGKNSLCTVYHWLQTKG---TQNIGLIAASLSARVAYEVISDLELSFLITAVGVVNLRD 143
Query: 708 LALMVGTTDIPDWCYVESYGSKGKDSFTESPSV--EDLTRFHS---KSPISHISKVKTPT 762
D E + V D H S + ++ P
Sbjct: 144 TLEKALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPL 203
Query: 763 IFLLGAQDLRVPVSNGLQVIYHIP 786
I D V ++ HI
Sbjct: 204 IAFTANNDDWVKQEEVYDMLAHIR 227
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 Length = 238 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 8e-10
Identities = 26/193 (13%), Positives = 52/193 (26%), Gaps = 29/193 (15%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRG---SLGFGEEALQSLPGKVGS 649
L++ LHG S L + G+ LL + G + +
Sbjct: 25 ALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVY 82
Query: 650 QDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708
+ V + + + GGS G F+ L+ + A
Sbjct: 83 RVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLA-------- 134
Query: 709 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLG 767
+G+ + + + P + P + L G
Sbjct: 135 --FIGSGFPMKL------------PQGQVVEDPGVLALYQAPPATRGEAYGGVPLLHLHG 180
Query: 768 AQDLRVPVSNGLQ 780
++D VP++ +
Sbjct: 181 SRDHIVPLARMEK 193
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 Length = 262 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 2e-09
Identities = 26/186 (13%), Positives = 55/186 (29%), Gaps = 28/186 (15%)
Query: 593 PLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
L V +HGG + SS+S S G+++ + +Y P S+
Sbjct: 64 GLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELC-----------PEVRISEI 112
Query: 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
+ A+ + + G S GG L ++ A + N+ +
Sbjct: 113 TQQISQAVTAAAKE---IDGPIVLAGHSAGGHLVARMLDPEVLP---EAVGARIRNVVPI 166
Query: 712 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 771
+D+ + D ++SP+ ++ +G +
Sbjct: 167 SPLSDLRPL----------LRTSMNEKFKMDADAAIAESPVEMQNRYDAKVTVWVGGAER 216
Query: 772 RVPVSN 777
+
Sbjct: 217 PAFLDQ 222
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A Length = 254 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-09
Identities = 39/214 (18%), Positives = 73/214 (34%), Gaps = 32/214 (14%)
Query: 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFG--EEALQSLPGKVGS 649
D +++L G S + + L L+ ++++ + RG +G + P
Sbjct: 23 DHAVLLLPGMLGS-GETDFGPQLKNLNKKLFTVVAWDPRG---YGHSRPPDRDFPADFFE 78
Query: 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-----FVAAAARNP 704
+D D + + + KV+++G S GG + P A A
Sbjct: 79 RDAKDAVDLMKA---LKFK---KVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVT 132
Query: 705 LCNLALMVGTTDIPDWC------YVESYGSKGKDSFTESPS-VEDLTRFHSKSPISHI-- 755
+ + G D+ W Y G D F + D R P +I
Sbjct: 133 DEDSMIYEGIRDVSKWSERTRKPLEALY---GYDYFARTCEKWVDGIRQFKHLPDGNICR 189
Query: 756 ---SKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786
+V+ P + + G +D VP + + H+
Sbjct: 190 HLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVK 223
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* Length = 277 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 25/196 (12%), Positives = 56/196 (28%), Gaps = 27/196 (13%)
Query: 593 PLIVVLHGGPHS-VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
P++++ GG + S + + + G +++NY+ L V
Sbjct: 36 PIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQ---------LIVGDQSVYPWA 86
Query: 652 VNDVLTAI----DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707
+ + I + + ++ + G S GG + G A +
Sbjct: 87 LQQLGATIDWITTQASAHHV-DCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLD--- 142
Query: 708 LALMVGTTDIPDWCYVESYG-SKGKDSFTESPSVEDLTRFHSK--SPISHISKVKTPTIF 764
+ Y F + + + ++ + ++ P
Sbjct: 143 -----HYQGQHAAI-ILGYPVIDLTAGFPTTSAARNQITTDARLWAAQRLVTPASKPAFV 196
Query: 765 LLGAQDLRVPVSNGLQ 780
A D VP N L+
Sbjct: 197 WQTATDESVPPINSLK 212
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} Length = 276 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 32/193 (16%)
Query: 593 PLIVVLHGGPHS-VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
P I++ GG + +S + GY +L++NY + L Q+
Sbjct: 44 PAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLNYT--VMNKGTNYNFLS-----QN 96
Query: 652 VNDVLTAI----DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707
+ +V + + + NP +V ++G S GG L
Sbjct: 97 LEEVQAVFSLIHQNHKEWQI-NPEQVFLLGCSAGGHLAAWYGNSEQIHRPKG-------- 147
Query: 708 LALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLG 767
+ L T D + +E+++ + + ++ PT
Sbjct: 148 VILCYPVTSFTFGWP--------SDLSHFNFEIENISEY---NISEKVTSSTPPTFIWHT 196
Query: 768 AQDLRVPVSNGLQ 780
A D VP+ N L+
Sbjct: 197 ADDEGVPIYNSLK 209
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 3e-08
Identities = 96/549 (17%), Positives = 165/549 (30%), Gaps = 139/549 (25%)
Query: 32 HRHTRFTVAKPAYFSYKR-LSVFLAMDASKAAPAKQVSSVLDA--TAEEEYASLSKLLQD 88
H H F + Y YK LSVF K V + + + EE + ++
Sbjct: 4 HHHMDFETGEHQY-QYKDILSVFED-AFVDNFDCKDVQDMPKSILSKEE----IDHIIMS 57
Query: 89 FTNISSIDKA-WTFNSGNGNGTQAMF-SISQPNLLANKRKKFMLSTVISKENENSVTFQW 146
+S + WT S Q + + N KF++S I E
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY------KFLMSP-IKTEQR------- 103
Query: 147 APFPVEMTGASAVVP----SPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHG 202
P + + +K V R + ++ L +L +V + G
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSR-LQPYLKLRQAL---LELRPAKNV--LIDG 157
Query: 203 -----------SVYADGWFE-----GISW------NSDETLIAYVAEEPSPSKPTFSLGS 240
V + I W NS ET++ + + P ++
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR- 216
Query: 241 TKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQP-SLFVI-NINSGEVQAVKGIPKSLSVG 298
SD N + + K L V+ N+ + +
Sbjct: 217 -----SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK-------------- 257
Query: 299 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELK--E 356
W N + L+ + T L + L ++L E L LK +
Sbjct: 258 --AWNAFNLSC-KILLTTRFKQVTDFLSAATTTHIS--LDHHSMTLTPDEVKSLLLKYLD 312
Query: 357 SSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID-WPTNG 415
+DLP E +++ +P + + A+ S D L D W
Sbjct: 313 CRPQDLPR----EVLTT------NP---RRLSIIAE--------SIRDGLATWDNWKHV- 350
Query: 416 NFSSLEKIVDVIPVVQCAEGDCFPGLYSS-SIL-SNPWLSDGCTMLLSSIWGSS-----Q 468
N L I++ + E + ++ S+ + + T+LLS IW
Sbjct: 351 NCDKLTTIIESS--LNVLEPAEYRKMFDRLSVFPPSAHIP---TILLSLIWFDVIKSDVM 405
Query: 469 VIISVNVSSGELLRITPAESNFSWSLLTLD----GDNIIAVSSSPVD------------- 511
V+++ L+ P ES S + L+ +N A+ S VD
Sbjct: 406 VVVNKLHKYS-LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 512 VPQVKYGYF 520
+P YF
Sbjct: 465 IPPYLDQYF 473
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* Length = 270 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 26/201 (12%), Positives = 57/201 (28%), Gaps = 20/201 (9%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRG---SLG-FGEEALQSLPGKVG 648
+ ++ HG + + S + L + + ++ G S G F +
Sbjct: 47 DMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFENMTV-------- 98
Query: 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708
++ D +++V + + +VG + GG + + L G PD P L
Sbjct: 99 LNEIEDANAILNYVKTDP--HVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATL 156
Query: 709 ALMVGTTDIPDWCYVESY--GSKGKDSFTESPS-VEDLTRFHSKSPISHISKVKTPTIFL 765
+ Y + T + + ++ P +
Sbjct: 157 KGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLP---IYEVSAQFTKPVCLI 213
Query: 766 LGAQDLRVPVSNGLQVIYHIP 786
G D V + +
Sbjct: 214 HGTDDTVVSPNASKKYDQIYQ 234
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} Length = 223 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 3e-07
Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 2/118 (1%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
+++ HG S S ++ +A L G + L+++ +
Sbjct: 36 GIVLFAHGSGSS-RYSPRNRYVAEVLQQAGLATLLIDLLTQEEEEIDLRTRHLRFDIGLL 94
Query: 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709
+ ++ A D + KV G S GG + P+ A +R +LA
Sbjct: 95 ASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDLA 152
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} Length = 283 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 5e-07
Identities = 34/196 (17%), Positives = 64/196 (32%), Gaps = 28/196 (14%)
Query: 593 PLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
P I+++ GG + ++ + GY + Y L + +G
Sbjct: 51 PAIIIVPGGSYTHIPVAQAESLAMAFAGHGYQAFYLEYT---------LLTDQQPLGLAP 101
Query: 652 VNDVLTAI----DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC- 706
V D+ A+ H + + +P ++T G S GG + + P
Sbjct: 102 VLDLGRAVNLLRQHAAEWHI-DPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAML 160
Query: 707 --NLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIF 764
N ++ P + + T +P+ +L + H++ PT
Sbjct: 161 KPNNVVLG----YPVISPLLGFPKDDATLATWTPTPNEL------AADQHVNSDNQPTFI 210
Query: 765 LLGAQDLRVPVSNGLQ 780
A D VP +N L
Sbjct: 211 WTTADDPIVPATNTLA 226
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 Length = 273 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 2e-06
Identities = 22/207 (10%), Positives = 58/207 (28%), Gaps = 38/207 (18%)
Query: 592 DPLIVVLHGG------PHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLP 644
++ +HGG + + ++ + + YR S P
Sbjct: 41 REAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLS-----------P 89
Query: 645 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK--------F 696
+++ D ++ I ++ + + +VG S G ++ D
Sbjct: 90 EITNPRNLYDAVSNITRLVKEK--GLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQL 147
Query: 697 VAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISH-- 754
+ + L+ G + + + Y D FT + + + +
Sbjct: 148 QMLGLLQIVKRVFLLDGIYSLKEL--LIEYPE--YDCFTRLAFPDGIQMYEEEPSRVMPY 203
Query: 755 ----ISKVKTPTIFLLGAQDLRVPVSN 777
+S+ + D + +
Sbjct: 204 VKKALSRFSIDMHLVHSYSDELLTLRQ 230
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A Length = 251 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 33/202 (16%), Positives = 63/202 (31%), Gaps = 21/202 (10%)
Query: 595 IVVLHG-GPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRG-SLGFGEEALQSLPGKVGSQD 651
+V+LH + +A L GY + + + G + L K
Sbjct: 25 VVLLHAYTGSPNDM----NFMARALQRSGYGVYVPLFSGHGTVEPLDIL----TKGNPDI 76
Query: 652 -VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710
+ A+ H+ +KV V G S GG + P +P+
Sbjct: 77 WWAESSAAVAHMTAKY----AKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKH 132
Query: 711 MVGTTDIPDWCYVESYGSKGKDSFTE----SPSVEDLTRFHSKSPISHISKVKTPTIFLL 766
+ + Y+ K +S + + +F + + + ++ VK PT
Sbjct: 133 HLVPGFLKYAEYMNRLAGKSDESTQILAYLPGQLAAIDQF-ATTVAADLNLVKQPTFIGQ 191
Query: 767 GAQDLRVPVSNGLQVIYHIPFS 788
QD V Q+ + +
Sbjct: 192 AGQDELVDGRLAYQLRDALINA 213
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} Length = 270 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 4e-06
Identities = 40/204 (19%), Positives = 76/204 (37%), Gaps = 26/204 (12%)
Query: 595 IVVLHG-GPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 651
++++HG S+ + LA + GY++ + +G G E + + D
Sbjct: 43 VLLVHGFTGTPHSM----RPLAEAYAKAGYTVCLPRLKGH-GTHYEDM----ERTTFHDW 93
Query: 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
V V + + V G S GG LT +L PD + A+
Sbjct: 94 VASVEEGYGWLKQRC----QTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIA 149
Query: 712 VGTTDIPDWC-YVESYGSKGKDSFTE--------SPSVEDLTRFHSKSPISHISKVKTPT 762
G T + Y++S GS K+ + + S+ L R +++ + + ++ P
Sbjct: 150 AGMTGGGELPRYLDSIGSDLKNPDVKELAYEKTPTASLLQLARLMAQTK-AKLDRIVCPA 208
Query: 763 IFLLGAQDLRVPVSNGLQVIYHIP 786
+ + +D VP N + I
Sbjct: 209 LIFVSDEDHVVPPGNADIIFQGIS 232
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} Length = 367 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 14/124 (11%)
Query: 593 PLIVVLHG--GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650
P IV+ S Y++++A G+ L + GE P V S
Sbjct: 97 PAIVIGGPFGAVKEQSSGLYAQTMA---ERGFVTLAFDPSY---TGE--SGGQPRNVASP 148
Query: 651 D--VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708
D D A+D + + N ++ V+G G + + + A DK V A + + ++
Sbjct: 149 DINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAV--AVDKRVKAVVTSTMYDM 206
Query: 709 ALMV 712
++
Sbjct: 207 TRVM 210
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} Length = 245 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 30/219 (13%), Positives = 74/219 (33%), Gaps = 39/219 (17%)
Query: 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE---EALQSLPGKVG 648
++ +HG +L + + +L Y+ ++++ +G GE + ++
Sbjct: 16 PNTLLFVHGSG--CNLKIFGELEKYLE--DYNCILLDLKG---HGESKGQCPSTV----- 63
Query: 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-----FVAAAAR- 702
+++V I + + +T++G S GG + + + ++ AR
Sbjct: 64 YGYIDNVANFITNSEVT--KHQKNITLIGYSMGGAIVLGVALKKLPNVRKVVSLSGGARF 121
Query: 703 -------------NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK 749
N L N L+ I + + + + KD + DL
Sbjct: 122 DKLDKDFMEKIYHNQLDNNYLLECIGGIDNPLSEKYFETLEKDPDI---MINDLIACKLI 178
Query: 750 SPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPFS 788
+ ++ + P ++ +L V + + S
Sbjct: 179 DLVDNLKNIDIPVKAIVAKDELLTLVEYSEIIKKEVENS 217
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} Length = 306 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 4e-05
Identities = 19/115 (16%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
I + G ++ + SS + ++S G+ ++ ++ +L + ++ +
Sbjct: 97 GAIAISPG--YTGTQSSIAWLGERIASHGFVVIAIDTNTTLDQPDSR---------ARQL 145
Query: 653 N---DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 704
N D + + S++ V+G S GG T + AA P
Sbjct: 146 NAALDYMLTDASSAVRNRIDASRLAVMGHSMGGG-GTLRLASQRPDLKAAIPLTP 199
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A Length = 303 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 4e-05
Identities = 32/192 (16%), Positives = 56/192 (29%), Gaps = 27/192 (14%)
Query: 593 PLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
PL V +HGG + +S + L GY + +++Y P Q
Sbjct: 83 PLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNLC-----------PQVTLEQL 131
Query: 652 VNDVLTAIDHVIDMGLA-NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710
+ ++ + D S +T G G L ++ + A + L
Sbjct: 132 MTQFTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQIL--MRPNVITAQRSKMVWALIF 189
Query: 711 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKT-----PTIFL 765
+ G D+ + +ES K E S SP+ T +
Sbjct: 190 LCGVYDLRELSNLESVNPKNILGLNER-------NIESVSPMLWEYTDVTVWNSTKIYVV 242
Query: 766 LGAQDLRVPVSN 777
D +
Sbjct: 243 AAEHDSTTFIEQ 254
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} Length = 347 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 36/284 (12%), Positives = 78/284 (27%), Gaps = 73/284 (25%)
Query: 107 NGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGS 166
G + +++ NL NK + +T++ + +N+ + A+ SP G
Sbjct: 23 KGELVAYVLTKANLKDNKYE----NTIVIENLKNNARRF-------IENATMPRISPDGK 71
Query: 167 KLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 226
K+ +R E + + +W ++ + WN D + V
Sbjct: 72 KIAFMRANEEKKVSE--IWVADLETLS-SKKILEAKNI------RSLEWNEDSRKLLIVG 122
Query: 227 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ 286
+ D+D W + + + ++ + S EV
Sbjct: 123 FKRRE---------------DEDFIFEDDVPAW--FDDLGFFDGEKTTFWIFDTESEEVI 165
Query: 287 AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 346
+ +W K+ + + Y +Y
Sbjct: 166 E---EFEKPRFSSGIWHR------------------DKIVVNVPHREIIPQYFKFWDIYI 204
Query: 347 SEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390
E + E + E +S F DG+ ++
Sbjct: 205 WEDGKEE------------KMFEKVS---FYAVDSDGERILLYG 233
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* Length = 273 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 10/114 (8%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
V++HG H S+ K L + G+ + ++ S G + + +
Sbjct: 5 KHFVLVHGACHGGW--SWYKLKPLLEAAGHKVTALDLAAS---GTDLRKIEELRTLYDYT 59
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706
++ ++ L+ KV +VG S GG + + P K AA
Sbjct: 60 LPLMELMES-----LSADEKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFM 108
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} Length = 289 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 41/240 (17%), Positives = 95/240 (39%), Gaps = 64/240 (26%)
Query: 592 DPLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE-EALQSLPGKVGS 649
D +V+LHG GP + +++S+++ L GY +++++ G +G+ +++ + +
Sbjct: 36 DETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPG---WGKSDSVVNSGSRSDL 92
Query: 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709
+ + +D + + +K+ ++G S GG + + P++ V L
Sbjct: 93 N-ARILKSVVDQ---LDI---AKIHLLGNSMGGHSSVAFTLKWPER-VGK--------LV 136
Query: 710 LM-VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR-----FHSKSPIS---------- 753
LM GT + + + + G K + P++E+L S ++
Sbjct: 137 LMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLTDALFEARLNN 196
Query: 754 ---------------------------HISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786
++++K T+ + G D VP+ GL+++ I
Sbjct: 197 MLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVPMDAGLRLLSGIA 256
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} Length = 377 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 3e-04
Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 13/147 (8%)
Query: 593 PLIVVLHG-------GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 645
+I HG P + +Y A+ +S GY ++ +Y G +
Sbjct: 75 GIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVMPDYLGLGDNELTLHPYVQA 134
Query: 646 KVGSQDVNDVLTAIDHVI-DMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAA 699
+ + D+L A + + K+ + G S GGF T + A
Sbjct: 135 ETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPDLPVSAV 194
Query: 700 AARNPLCNLALMVGTTDIPDWCYVESY 726
A + + + +Y
Sbjct: 195 APGSAPYGWEETMHFVMLEPGPRATAY 221
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A Length = 259 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 4e-04
Identities = 20/124 (16%), Positives = 37/124 (29%), Gaps = 19/124 (15%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVN-----YRGSLGFGEEALQSL---- 643
L+++ HGG + + L G S + ++ R S+ G E +
Sbjct: 57 RLVLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGPGHGERASVQAGREPTDVVGLDA 116
Query: 644 ------PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFV 697
G + + D A+D + P G S G + + +
Sbjct: 117 FPRMWHEGGGTAAVIADWAAALDFI--EAEEGPRPTGWWGLSMGTMMGLPVTASDKR--I 172
Query: 698 AAAA 701
A
Sbjct: 173 KVAL 176
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* Length = 264 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 4e-04
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 15/114 (13%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
V++HGG + K L S G+ + V+ + G +
Sbjct: 11 KHFVLVHGGCLG--AWIWYKLKPLLESAGHKVTAVDLSAA---GINPRRLDEIHTFRDYS 65
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK-----FVAAAA 701
++ + + KV ++G S GG + P+K F++A
Sbjct: 66 EPLMEVMASIPPDE-----KVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAMM 114
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Length = 1045 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 5e-04
Identities = 37/364 (10%), Positives = 92/364 (25%), Gaps = 64/364 (17%)
Query: 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGI 213
+ + G + V + + + Q V + +
Sbjct: 297 SKFAEDFSPLDGDLIAFV--------SRGQAFIQDVSGTY--VLKVPEPLRIRY-----V 341
Query: 214 SWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQP 273
D + + + K +++ + + +
Sbjct: 342 RRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEEN-LGNVFAMGVDRNGKFAVVANDRF 400
Query: 274 SLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 333
+ +++ +G+ + + + + + +++ + G
Sbjct: 401 EIMTVDLETGKPTVI-ERSREAMITDFTISDNS----RFIAYGFPLKHGETDGYVM---- 451
Query: 334 PCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393
+ +Y E + + T S + P F D K L +LS +S
Sbjct: 452 ------QAIHVYDMEGRK------------IFAATTENSHDYAPAFDADSKNLYYLSYRS 493
Query: 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 453
+ +++ S E + + L S+ S
Sbjct: 494 ------LDPSPDRVVLNF-------SFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY 540
Query: 454 DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVP 513
D + +NV G+ I P ES+ + + G+ +P
Sbjct: 541 DL--------NDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGV 592
Query: 514 QVKY 517
+KY
Sbjct: 593 LLKY 596
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* Length = 710 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 18/135 (13%)
Query: 581 VSSSHKKDCSCD---PLIVVLHG-GPHSVSLS-SYSKS-LAFLSSVGYSLLIVNYRGSLG 634
+ HKK D P L+G G ++S++ +YS S L F+ +G L + N RG
Sbjct: 452 MFIVHKKGIKLDGSHPAF--LYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGE 509
Query: 635 FGE---EALQSLPGKVGS-QDV-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689
+GE + G + + Q+ +D A +++I G +P ++T+ GGS+GG L
Sbjct: 510 YGETWHKG-----GILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCA 564
Query: 690 GQAPDKFVAAAARNP 704
Q PD F A+
Sbjct: 565 NQRPDLFGCVIAQVG 579
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 Length = 210 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 8e-04
Identities = 21/139 (15%), Positives = 42/139 (30%), Gaps = 10/139 (7%)
Query: 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651
+++LHG S +L L+ GY + ++ G G +E
Sbjct: 32 RFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRAVAIDLPGL-GHSKE-----AAAPAPIG 85
Query: 652 VNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710
+ + V+D + L V+ S G + + + P+C +
Sbjct: 86 ELAPGSFLAAVVDALEL---GPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKI 142
Query: 711 MVGTTDIPDWCYVESYGSK 729
+ YG +
Sbjct: 143 NAANYASVKTPALIVYGDQ 161
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} Length = 270 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 8e-04
Identities = 38/229 (16%), Positives = 75/229 (32%), Gaps = 48/229 (20%)
Query: 585 HKKDCSCDPLIVVLHG------GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRG---SLG- 634
P + L G G ++ + +S+G + +Y G S G
Sbjct: 30 RAPAQDERPTCIWLGGYRSDMTGTKALEMD------DLAASLGVGAIRFDYSGHGASGGA 83
Query: 635 FGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 694
F + + S+ + + L +DH P K +VG S GG++ LI +
Sbjct: 84 FRDGTI--------SRWLEEALAVLDHF------KPEKAILVGSSMGGWIALRLIQELKA 129
Query: 695 KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH------- 747
+ + L+ D G + + E+ E+++ +
Sbjct: 130 ---RHDNPTQVSGMVLIAPAPDFTSDLIEPLLGDRERAELAENGYFEEVSEYSPEPNIFT 186
Query: 748 --------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPFS 788
+ ++ + P L G D VP + L+++ H+P
Sbjct: 187 RALMEDGRANRVMAGMIDTGCPVHILQGMADPDVPYQHALKLVEHLPAD 235
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 789 | |||
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 100.0 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 100.0 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 100.0 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 100.0 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 100.0 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 100.0 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 100.0 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 100.0 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 100.0 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 100.0 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 100.0 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.91 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.91 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.88 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.86 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.86 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.85 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.85 | |
| 4ao6_A | 259 | Esterase; hydrolase, thermo label; 1.60A {Unidenti | 99.85 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.84 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.83 | |
| 2jbw_A | 386 | Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine | 99.82 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.82 | |
| 1vlq_A | 337 | Acetyl xylan esterase; TM0077, structural genomics | 99.82 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.81 | |
| 3pfb_A | 270 | Cinnamoyl esterase; alpha/beta hydrolase fold, hyd | 99.81 | |
| 2wtm_A | 251 | EST1E; hydrolase; 1.60A {Clostridium proteoclastic | 99.8 | |
| 3hxk_A | 276 | Sugar hydrolase; alpha-beta protein., structural g | 99.8 | |
| 3fcy_A | 346 | Xylan esterase 1; alpha/beta hydrolase, carbohydra | 99.8 | |
| 1mpx_A | 615 | Alpha-amino acid ester hydrolase; alpha/beta hydro | 99.79 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.79 | |
| 3doh_A | 380 | Esterase; alpha-beta hydrolase, beta sheet; 2.60A | 99.79 | |
| 1l7a_A | 318 | Cephalosporin C deacetylase; structural genomics, | 99.79 | |
| 3trd_A | 208 | Alpha/beta hydrolase; cellular processes; 1.50A {C | 99.78 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.78 | |
| 3f67_A | 241 | Putative dienelactone hydrolase; alpha-beta-alpha | 99.78 | |
| 3bxp_A | 277 | Putative lipase/esterase; putative carboxylesteras | 99.77 | |
| 3bjr_A | 283 | Putative carboxylesterase; structural genomics, jo | 99.77 | |
| 2b9v_A | 652 | Alpha-amino acid ester hydrolase; catalytic triad, | 99.77 | |
| 2i3d_A | 249 | AGR_C_3351P, hypothetical protein ATU1826; structu | 99.76 | |
| 3hju_A | 342 | Monoglyceride lipase; alpha/beta hydrolase, hydrol | 99.76 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.75 | |
| 3pe6_A | 303 | Monoglyceride lipase; alpha-beta hydrolase fold, 2 | 99.75 | |
| 2pbl_A | 262 | Putative esterase/lipase/thioesterase; alpha/beta- | 99.75 | |
| 2hdw_A | 367 | Hypothetical protein PA2218; alpha/beta hydrolase | 99.74 | |
| 1zi8_A | 236 | Carboxymethylenebutenolidase; alpha and beta prote | 99.74 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.74 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.74 | |
| 3llc_A | 270 | Putative hydrolase; structural genomics, joint cen | 99.74 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.74 | |
| 2fuk_A | 220 | XC6422 protein; A/B hydrolase, structural genomics | 99.74 | |
| 4e15_A | 303 | Kynurenine formamidase; alpha/beta hydrolase fold, | 99.73 | |
| 4fbl_A | 281 | LIPS lipolytic enzyme; thermostable, structural ge | 99.73 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.73 | |
| 1lns_A | 763 | X-prolyl dipeptidyl aminopetidase; alpha beta hydr | 99.73 | |
| 3ksr_A | 290 | Putative serine hydrolase; catalytic triad, struct | 99.73 | |
| 2o2g_A | 223 | Dienelactone hydrolase; YP_324580.1, structural ge | 99.73 | |
| 3k2i_A | 422 | Acyl-coenzyme A thioesterase 4; alpha/beta hydrola | 99.72 | |
| 3fnb_A | 405 | Acylaminoacyl peptidase SMU_737; alpha-beta-alpha | 99.72 | |
| 3mve_A | 415 | FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/ | 99.72 | |
| 3iii_A | 560 | COCE/NOND family hydrolase; structural genomics, c | 99.71 | |
| 3bdi_A | 207 | Uncharacterized protein TA0194; NP_393672.1, predi | 99.71 | |
| 3hlk_A | 446 | Acyl-coenzyme A thioesterase 2, mitochondrial; alp | 99.7 | |
| 3fcx_A | 282 | FGH, esterase D, S-formylglutathione hydrolase; re | 99.7 | |
| 3h04_A | 275 | Uncharacterized protein; protein with unknown func | 99.69 | |
| 3nuz_A | 398 | Putative acetyl xylan esterase; structural genomic | 99.69 | |
| 3g8y_A | 391 | SUSD/RAGB-associated esterase-like protein; struct | 99.69 | |
| 1jfr_A | 262 | Lipase; serine hydrolase; 1.90A {Streptomyces exfo | 99.68 | |
| 4f0j_A | 315 | Probable hydrolytic enzyme; alpha/beta hydrolase f | 99.68 | |
| 3ebl_A | 365 | Gibberellin receptor GID1; alpha/beta hydrolase, l | 99.68 | |
| 3vis_A | 306 | Esterase; alpha/beta-hydrolase fold, polyethylene | 99.68 | |
| 3i6y_A | 280 | Esterase APC40077; lipase, structural genomics, PS | 99.68 | |
| 3fak_A | 322 | Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Unc | 99.68 | |
| 3ga7_A | 326 | Acetyl esterase; phosphoserine, IDP00896, hydrolas | 99.68 | |
| 1vkh_A | 273 | Putative serine hydrolase; structural genomics, jo | 99.67 | |
| 3qit_A | 286 | CURM TE, polyketide synthase; thioesterase, alpha/ | 99.67 | |
| 3ls2_A | 280 | S-formylglutathione hydrolase; psychrophilic organ | 99.67 | |
| 1tht_A | 305 | Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1. | 99.67 | |
| 3e4d_A | 278 | Esterase D; S-formylglutathione hydrolase, hydrola | 99.66 | |
| 1k8q_A | 377 | Triacylglycerol lipase, gastric; APHA beta hydrola | 99.66 | |
| 2zsh_A | 351 | Probable gibberellin receptor GID1L1; plant hormon | 99.66 | |
| 1jkm_A | 361 | Brefeldin A esterase; serine hydrolase, degradatio | 99.66 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.66 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.66 | |
| 3og9_A | 209 | Protein YAHD A copper inducible hydrolase; alpha/b | 99.66 | |
| 2hm7_A | 310 | Carboxylesterase; alpha/beta hydrolase fold, hydro | 99.65 | |
| 3dkr_A | 251 | Esterase D; alpha beta hydrolase, mechanism, catal | 99.65 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.65 | |
| 3h2g_A | 397 | Esterase; xanthomonas oryzae PV. oryzae, cell WALL | 99.65 | |
| 2qjw_A | 176 | Uncharacterized protein XCC1541; putative hydrolas | 99.65 | |
| 3i2k_A | 587 | Cocaine esterase; alpha/beta hydrolase, hydrolase; | 99.65 | |
| 2wir_A | 313 | Pesta, alpha/beta hydrolase fold-3 domain protein; | 99.65 | |
| 1ufo_A | 238 | Hypothetical protein TT1662; alpha-beta fold, hydr | 99.65 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.64 | |
| 1imj_A | 210 | CIB, CCG1-interacting factor B; alpha/beta hydrola | 99.64 | |
| 2o7r_A | 338 | CXE carboxylesterase; alpha/beta hydrolase; 1.40A | 99.63 | |
| 3qh4_A | 317 | Esterase LIPW; structural genomics, ssgcid, seattl | 99.63 | |
| 3r0v_A | 262 | Alpha/beta hydrolase fold protein; structural geno | 99.63 | |
| 4h0c_A | 210 | Phospholipase/carboxylesterase; PSI-biology, midwe | 99.63 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.63 | |
| 3rm3_A | 270 | MGLP, thermostable monoacylglycerol lipase; alpha/ | 99.63 | |
| 1fj2_A | 232 | Protein (acyl protein thioesterase 1); alpha/beta | 99.63 | |
| 2y6u_A | 398 | Peroxisomal membrane protein LPX1; hydrolase, puta | 99.63 | |
| 3om8_A | 266 | Probable hydrolase; structural genomics, PSI-2, pr | 99.63 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.63 | |
| 3cn9_A | 226 | Carboxylesterase; alpha/beta hydrolase fold super- | 99.62 | |
| 3ain_A | 323 | 303AA long hypothetical esterase; carboxylesterase | 99.62 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.62 | |
| 3d0k_A | 304 | Putative poly(3-hydroxybutyrate) depolymerase LPQ; | 99.61 | |
| 4fle_A | 202 | Esterase; structural genomics, PSI-biology, northe | 99.61 | |
| 2uz0_A | 263 | Esterase, tributyrin esterase; alpha/beta hydrolas | 99.61 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.61 | |
| 3ia2_A | 271 | Arylesterase; alpha-beta hydrolase fold, transitio | 99.61 | |
| 1lzl_A | 323 | Heroin esterase; alpha/beta hydrolase; 1.30A {Rhod | 99.61 | |
| 1brt_A | 277 | Bromoperoxidase A2; haloperoxidase, oxidoreductase | 99.61 | |
| 3kxp_A | 314 | Alpha-(N-acetylaminomethylene)succinic acid hydrol | 99.61 | |
| 2c7b_A | 311 | Carboxylesterase, ESTE1; carboxyesterase, thermoph | 99.61 | |
| 4b6g_A | 283 | Putative esterase; hydrolase, formaldehyde detoxif | 99.6 | |
| 3b5e_A | 223 | MLL8374 protein; NP_108484.1, carboxylesterase, st | 99.6 | |
| 2xua_A | 266 | PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, cate | 99.6 | |
| 3v48_A | 268 | Aminohydrolase, putative aminoacrylate hydrolase R | 99.6 | |
| 2ocg_A | 254 | Valacyclovir hydrolase; alpha beta hydrolase fold; | 99.6 | |
| 3k6k_A | 322 | Esterase/lipase; alpha/beta hydrolase fold; 2.20A | 99.59 | |
| 4dnp_A | 269 | DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petu | 99.59 | |
| 1zoi_A | 276 | Esterase; alpha/beta hydrolase fold; 1.60A {Pseudo | 99.59 | |
| 1auo_A | 218 | Carboxylesterase; hydrolase; 1.80A {Pseudomonas fl | 99.59 | |
| 1q0r_A | 298 | RDMC, aclacinomycin methylesterase; anthracycline, | 99.59 | |
| 3fob_A | 281 | Bromoperoxidase; structural genomics, IDP00046, ba | 99.59 | |
| 3oos_A | 278 | Alpha/beta hydrolase family protein; APC67239.0, p | 99.59 | |
| 3sty_A | 267 | Methylketone synthase 1; alpha/beta hydrolase, dec | 99.59 | |
| 3u1t_A | 309 | DMMA haloalkane dehalogenase; alpha/beta-hydrolase | 99.59 | |
| 1a8q_A | 274 | Bromoperoxidase A1; haloperoxidase, oxidoreductase | 99.59 | |
| 4ezi_A | 377 | Uncharacterized protein; alpha-beta hydrolases fol | 99.58 | |
| 1jjf_A | 268 | Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-x | 99.58 | |
| 1a88_A | 275 | Chloroperoxidase L; haloperoxidase, oxidoreductase | 99.58 | |
| 1a8s_A | 273 | Chloroperoxidase F; haloperoxidase, oxidoreductase | 99.58 | |
| 2r8b_A | 251 | AGR_C_4453P, uncharacterized protein ATU2452; APC6 | 99.58 | |
| 2puj_A | 286 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; | 99.58 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.57 | |
| 1c4x_A | 285 | BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-di | 99.57 | |
| 3g9x_A | 299 | Haloalkane dehalogenase; alpha/beta hydrolase, hel | 99.57 | |
| 3dqz_A | 258 | Alpha-hydroxynitrIle lyase-like protein; A/B-hydrl | 99.57 | |
| 2h1i_A | 226 | Carboxylesterase; structural genomics, PSI-2, prot | 99.57 | |
| 3qvm_A | 282 | OLEI00960; structural genomics, PSI-biology, midwe | 99.57 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.57 | |
| 3r40_A | 306 | Fluoroacetate dehalogenase; FACD, defluorinase, al | 99.57 | |
| 1iup_A | 282 | META-cleavage product hydrolase; aromatic compound | 99.56 | |
| 2yys_A | 286 | Proline iminopeptidase-related protein; TTHA1809, | 99.56 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.56 | |
| 3e0x_A | 245 | Lipase-esterase related protein; APC60309, clostri | 99.56 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.56 | |
| 1tqh_A | 247 | Carboxylesterase precursor; tetrahedral intermedia | 99.56 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.56 | |
| 1r88_A | 280 | MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBP | 99.56 | |
| 1mtz_A | 293 | Proline iminopeptidase; alpha-beta hydrolase, CAP | 99.55 | |
| 3fsg_A | 272 | Alpha/beta superfamily hydrolase; PF00561, MCSG, P | 99.55 | |
| 2wue_A | 291 | 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolas | 99.55 | |
| 2r11_A | 306 | Carboxylesterase NP; 2632844, putative hydrolase, | 99.55 | |
| 3d7r_A | 326 | Esterase; alpha/beta fold, hydrolase; 2.01A {Staph | 99.55 | |
| 2xt0_A | 297 | Haloalkane dehalogenase; hydrolase, alpha-beta hyd | 99.55 | |
| 1jji_A | 311 | Carboxylesterase; alpha-beta hydrolase fold, hydro | 99.55 | |
| 1gkl_A | 297 | Endo-1,4-beta-xylanase Y; hydrolase, esterase fami | 99.55 | |
| 3vdx_A | 456 | Designed 16NM tetrahedral protein CAGE containing | 99.54 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.54 | |
| 2qm0_A | 275 | BES; alpha-beta structure, structural genomics, PS | 99.54 | |
| 2fx5_A | 258 | Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pse | 99.54 | |
| 3hss_A | 293 | Putative bromoperoxidase; alpha beta hydrolase, ox | 99.54 | |
| 2qru_A | 274 | Uncharacterized protein; alpha/beta-hydrolase, str | 99.54 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.54 | |
| 1u2e_A | 289 | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | 99.54 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.54 | |
| 1sfr_A | 304 | Antigen 85-A; alpha/beta hydrolase, structural gen | 99.54 | |
| 2pl5_A | 366 | Homoserine O-acetyltransferase; alpha/beta hydrola | 99.54 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.53 | |
| 1hkh_A | 279 | Gamma lactamase; hydrolase, alpha/beta hydrolase, | 99.53 | |
| 1b6g_A | 310 | Haloalkane dehalogenase; hydrolase, alpha/beta-hyd | 99.52 | |
| 3nwo_A | 330 | PIP, proline iminopeptidase; structural genomics, | 99.52 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.52 | |
| 3i28_A | 555 | Epoxide hydrolase 2; aromatic hydrocarbons catabol | 99.52 | |
| 3u0v_A | 239 | Lysophospholipase-like protein 1; alpha, beta hydr | 99.52 | |
| 3p2m_A | 330 | Possible hydrolase; alpha/beta hydrolase superfami | 99.51 | |
| 1uxo_A | 192 | YDEN protein; hydrolase, A/B hydrolase, esterase, | 99.51 | |
| 1j1i_A | 296 | META cleavage compound hydrolase; carbazole degrad | 99.51 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.51 | |
| 4fhz_A | 285 | Phospholipase/carboxylesterase; alpha/beta hydrola | 99.51 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.51 | |
| 2vat_A | 444 | Acetyl-COA--deacetylcephalosporin C acetyltransfer | 99.5 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.5 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 99.5 | |
| 3i1i_A | 377 | Homoserine O-acetyltransferase; structural genomic | 99.5 | |
| 2wfl_A | 264 | Polyneuridine-aldehyde esterase; alkaloid metaboli | 99.5 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.49 | |
| 3bf7_A | 255 | Esterase YBFF; thioesterase, helical CAP, hydrolas | 99.49 | |
| 2qs9_A | 194 | Retinoblastoma-binding protein 9; B5T overexpresse | 99.49 | |
| 2qvb_A | 297 | Haloalkane dehalogenase 3; RV2579, alpha-beta hydr | 99.49 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.48 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.48 | |
| 1qlw_A | 328 | Esterase; anisotropic refinement, atomic resolutio | 99.48 | |
| 2e3j_A | 356 | Epoxide hydrolase EPHB; epoxide hydrolase B, struc | 99.48 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.48 | |
| 2b61_A | 377 | Homoserine O-acetyltransferase; acyl-enzyme, aspar | 99.48 | |
| 1wm1_A | 317 | Proline iminopeptidase; complex with inhibitor, hy | 99.48 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.48 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.48 | |
| 4g9e_A | 279 | AHL-lactonase, alpha/beta hydrolase fold protein; | 99.48 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.47 | |
| 1azw_A | 313 | Proline iminopeptidase; aminopeptidase, serine pro | 99.47 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.47 | |
| 1mj5_A | 302 | 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; | 99.47 | |
| 3bwx_A | 285 | Alpha/beta hydrolase; YP_496220.1, joint center fo | 99.47 | |
| 1xkl_A | 273 | SABP2, salicylic acid-binding protein 2; alpha-bet | 99.47 | |
| 1ehy_A | 294 | Protein (soluble epoxide hydrolase); alpha/beta hy | 99.46 | |
| 3fla_A | 267 | RIFR; alpha-beta hydrolase thioesterase, hydrolase | 99.46 | |
| 3afi_E | 316 | Haloalkane dehalogenase; A/B-hydrolase, hydrolase; | 99.46 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.46 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.46 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.46 | |
| 2xmz_A | 269 | Hydrolase, alpha/beta hydrolase fold family; menaq | 99.46 | |
| 3c6x_A | 257 | Hydroxynitrilase; atomic resolution, hydroxynitril | 99.45 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.45 | |
| 3kda_A | 301 | CFTR inhibitory factor (CIF); alpha/beta hydrolase | 99.45 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.45 | |
| 2q0x_A | 335 | Protein DUF1749, uncharacterized protein; alpha/be | 99.44 | |
| 1wom_A | 271 | RSBQ, sigma factor SIGB regulation protein RSBQ; a | 99.44 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.44 | |
| 2rau_A | 354 | Putative esterase; NP_343859.1, putative lipase, s | 99.44 | |
| 3d59_A | 383 | Platelet-activating factor acetylhydrolase; secret | 99.44 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 99.43 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.43 | |
| 1isp_A | 181 | Lipase; alpha/beta hydrolase fold, hydrolase; 1.30 | 99.43 | |
| 2cjp_A | 328 | Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tu | 99.43 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.43 | |
| 1dqz_A | 280 | 85C, protein (antigen 85-C); fibronectin, structur | 99.42 | |
| 3ibt_A | 264 | 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, | 99.42 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.41 | |
| 3l80_A | 292 | Putative uncharacterized protein SMU.1393C; alpha/ | 99.41 | |
| 1m33_A | 258 | BIOH protein; alpha-betta-alpha sandwich, structur | 99.4 | |
| 2qmq_A | 286 | Protein NDRG2, protein NDR2; alpha/beta-hydrolases | 99.4 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.4 | |
| 3bdv_A | 191 | Uncharacterized protein DUF1234; DUF1234 family pr | 99.4 | |
| 2psd_A | 318 | Renilla-luciferin 2-monooxygenase; alpha/beta-hydr | 99.4 | |
| 1pja_A | 302 | Palmitoyl-protein thioesterase 2 precursor; hydrol | 99.39 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.39 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.39 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.39 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.39 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.38 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.38 | |
| 1ycd_A | 243 | Hypothetical 27.3 kDa protein in AAP1-SMF2 interge | 99.37 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.37 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.37 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.36 | |
| 3b12_A | 304 | Fluoroacetate dehalogenase; dehalogease, hydrolase | 99.06 | |
| 3qmv_A | 280 | Thioesterase, REDJ; alpha/beta hydrolase fold, hyd | 99.35 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.35 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.35 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.35 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.34 | |
| 4f21_A | 246 | Carboxylesterase/phospholipase family protein; str | 99.34 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.34 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.34 | |
| 1qe3_A | 489 | PNB esterase, para-nitrobenzyl esterase; alpha-bet | 99.34 | |
| 3guu_A | 462 | Lipase A; protein structure, hydrolase; HET: 1PE; | 99.33 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.32 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.32 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.32 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.31 | |
| 3c8d_A | 403 | Enterochelin esterase; alpha-beta-alpha sandwich, | 99.31 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.31 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.31 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.3 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.29 | |
| 2gzs_A | 278 | IROE protein; enterobactin, salmochelin, DFP, hydr | 99.29 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.29 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.29 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.28 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.28 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.28 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.28 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.28 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.27 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.27 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.27 | |
| 3qyj_A | 291 | ALR0039 protein; alpha/beta fold, hydrolase; 1.78A | 99.27 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.27 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.27 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.26 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.25 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.25 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.24 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.22 | |
| 1tca_A | 317 | Lipase; hydrolase(carboxylic esterase); HET: NAG; | 99.22 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.22 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.22 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.21 | |
| 2h7c_A | 542 | Liver carboxylesterase 1; enzyme, cholesteryl este | 99.21 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.21 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.21 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.21 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.21 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.2 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.2 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.2 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.2 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.18 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.18 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.18 | |
| 4i19_A | 388 | Epoxide hydrolase; structural genomics, PSI-biolog | 99.16 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.16 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.15 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.15 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.14 | |
| 1r3d_A | 264 | Conserved hypothetical protein VC1974; structural | 99.13 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.12 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.12 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.12 | |
| 3gff_A | 331 | IROE-like serine hydrolase; NP_718593.1, structura | 99.12 | |
| 3fle_A | 249 | SE_1780 protein; structural genomics, APC61035.1, | 99.12 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.12 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.12 | |
| 3pic_A | 375 | CIP2; alpha/beta hydrolase fold, glucuronoyl ester | 99.11 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.11 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.11 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.1 | |
| 2ogt_A | 498 | Thermostable carboxylesterase EST50; alpha/beta hy | 99.1 | |
| 3lp5_A | 250 | Putative cell surface hydrolase; structural genom | 99.1 | |
| 2wj6_A | 276 | 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxid | 99.09 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.09 | |
| 1ukc_A | 522 | ESTA, esterase; fungi, A/B hydrolase fold, acetylc | 99.09 | |
| 3ds8_A | 254 | LIN2722 protein; unkonwn function, structural geno | 99.08 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.08 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.08 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.07 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.07 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.06 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.05 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.05 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.05 | |
| 2ha2_A | 543 | ACHE, acetylcholinesterase; hydrolase fold, serine | 99.05 | |
| 4g4g_A | 433 | 4-O-methyl-glucuronoyl methylesterase; alpha/beta | 99.04 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.04 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.03 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.03 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.03 | |
| 1p0i_A | 529 | Cholinesterase; serine hydrolase, butyrate, hydrol | 99.02 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.02 | |
| 1gpl_A | 432 | RP2 lipase; serine esterase, hydrolase, lipid degr | 99.01 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.0 | |
| 3g02_A | 408 | Epoxide hydrolase; alpha/beta hydrolase fold, enan | 99.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.0 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.0 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.99 | |
| 2k2q_B | 242 | Surfactin synthetase thioesterase subunit; A/B-hyd | 98.99 | |
| 1ea5_A | 537 | ACHE, acetylcholinesterase; hydrolase, serine hydr | 98.99 | |
| 2bce_A | 579 | Cholesterol esterase; hydrolase, serine esterase, | 98.99 | |
| 1thg_A | 544 | Lipase; hydrolase(carboxylic esterase); HET: NAG N | 98.99 | |
| 3c5v_A | 316 | PME-1, protein phosphatase methylesterase 1; demet | 98.99 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.99 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 98.98 | |
| 3lcr_A | 319 | Tautomycetin biosynthetic PKS; alpha-beta hydrolas | 98.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.97 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.97 | |
| 1llf_A | 534 | Lipase 3; candida cylindracea cholesterol esterase | 98.96 | |
| 2fj0_A | 551 | JuvenIle hormone esterase; manduca sexta, alpha-be | 98.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.95 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.95 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.95 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.94 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 98.94 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 98.93 | |
| 1dx4_A | 585 | ACHE, acetylcholinesterase; hydrolase, serine este | 98.93 | |
| 1kez_A | 300 | Erythronolide synthase; polyketide synthase, modul | 98.93 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 98.92 | |
| 3icv_A | 316 | Lipase B, CALB; circular permutation, cleavage on | 98.92 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 98.91 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.9 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.9 | |
| 1ex9_A | 285 | Lactonizing lipase; alpha-beta hydrolase fold, pho | 98.9 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 98.88 | |
| 2d81_A | 318 | PHB depolymerase; alpha/beta hydrolase fold, circu | 98.87 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 98.87 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 98.87 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.87 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 98.86 | |
| 4fol_A | 299 | FGH, S-formylglutathione hydrolase; D-type esteras | 98.86 | |
| 1ys1_X | 320 | Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor h | 98.85 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.85 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.84 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.84 | |
| 3bix_A | 574 | Neuroligin-1, neuroligin I; esterase domain, alpha | 98.83 | |
| 1bu8_A | 452 | Protein (pancreatic lipase related protein 2); hyd | 98.83 | |
| 3n2z_B | 446 | Lysosomal Pro-X carboxypeptidase; alpha/beta hydro | 98.82 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.82 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.8 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.8 | |
| 2x5x_A | 342 | PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE | 98.8 | |
| 3ils_A | 265 | PKS, aflatoxin biosynthesis polyketide synthase; A | 98.79 | |
| 1w52_X | 452 | Pancreatic lipase related protein 2; detergent, cl | 98.79 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.79 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 98.79 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.74 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.73 | |
| 1ei9_A | 279 | Palmitoyl protein thioesterase 1; alpha/beta hydro | 98.73 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 98.73 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.7 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 98.69 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.68 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.65 | |
| 2zyr_A | 484 | Lipase, putative; fatty acid, hydrolase; HET: 1PE; | 98.65 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.65 | |
| 1hpl_A | 449 | Lipase; hydrolase(carboxylic esterase); 2.30A {Equ | 98.65 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.63 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.63 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.63 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.61 | |
| 1rp1_A | 450 | Pancreatic lipase related protein 1; hydrolase, li | 98.57 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.54 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.54 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.54 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.53 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.53 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.51 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.5 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.48 | |
| 2dst_A | 131 | Hypothetical protein TTHA1544; conserved hypotheti | 98.47 | |
| 1jmk_C | 230 | SRFTE, surfactin synthetase; thioesterase, non-rib | 98.47 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.46 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.45 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 98.44 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.39 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 98.38 | |
| 2cb9_A | 244 | Fengycin synthetase; thioesterase, non-ribosomal p | 98.36 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.35 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 98.34 | |
| 3tej_A | 329 | Enterobactin synthase component F; nonribosomal pe | 98.33 | |
| 2hih_A | 431 | Lipase 46 kDa form; A1 phospholipase, phospholipid | 98.28 | |
| 2hfk_A | 319 | Pikromycin, type I polyketide synthase pikaiv; alp | 98.27 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.27 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.24 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.18 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.17 | |
| 2dsn_A | 387 | Thermostable lipase; T1 lipase, hydrolase; 1.50A { | 98.16 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.16 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.14 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.13 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 98.12 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.11 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.1 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.07 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.06 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.04 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.0 | |
| 3tjm_A | 283 | Fatty acid synthase; thioesterase domain, fatty ac | 97.99 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.98 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.97 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.97 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.95 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.9 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.89 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.83 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.82 | |
| 4ebb_A | 472 | Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2 | 97.81 | |
| 1whs_A | 255 | Serine carboxypeptidase II; HET: NAG FUC; 2.00A {T | 97.8 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.78 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.78 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.75 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.74 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.73 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.7 | |
| 1ivy_A | 452 | Human protective protein; carboxypeptidase, serine | 97.7 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.67 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.66 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.65 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.62 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.58 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.53 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.52 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.51 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.49 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.45 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 97.3 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 97.28 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.25 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.25 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.22 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.15 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 97.1 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 97.1 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.08 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.06 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.97 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 96.87 | |
| 2px6_A | 316 | Thioesterase domain; thioesaterse domain, orlistat | 96.86 | |
| 1ac5_A | 483 | KEX1(delta)P; carboxypeptidase, hydrolase, glycopr | 96.83 | |
| 4az3_A | 300 | Lysosomal protective protein 32 kDa chain; hydrola | 96.83 | |
| 1cpy_A | 421 | Serine carboxypeptidase; hydrolase (carboxypeptida | 96.81 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.78 |
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-54 Score=513.18 Aligned_cols=571 Identities=14% Similarity=0.152 Sum_probs=400.0
Q ss_pred ecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003886 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (789)
Q Consensus 102 ~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (789)
..+||||++|+|.......-.......+|++++. +++.++++..+ +.+..|+|||||++|||+++. .+
T Consensus 67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~--~~~~~~l~~~~-----~~~~~~~~SPdG~~la~~~~~-----~i 134 (740)
T 4a5s_A 67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN--KRQLITEERIP-----NNTQWVTWSPVGHKLAYVWNN-----DI 134 (740)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT--TTEECCSSCCC-----TTEEEEEECSSTTCEEEEETT-----EE
T ss_pred eEECCCCCEEEEEECCeeeEEEccceEEEEEECC--CCcEEEcccCC-----CcceeeEECCCCCEEEEEECC-----eE
Confidence 3458999999998764332222344788898874 34555665544 468899999999999999765 37
Q ss_pred EEEe-cCCceeEEEecCC------CccccccCCC---cccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCC
Q 003886 182 FELW-SQSQLEKEFHVPQ------TVHGSVYADG---WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCN 251 (789)
Q Consensus 182 ~~i~-~~~~~~~~~~~~~------~~~g~v~~d~---~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (789)
+... .+++.++++.... +...+||.++ ....++|||||++|||.+.+.... +.|......... ...
T Consensus 135 ~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v-~~~~~~~~~~~~---~~~ 210 (740)
T 4a5s_A 135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEV-PLIEYSFYSDES---LQY 210 (740)
T ss_dssp EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTC-CEEEEEECCSTT---CSS
T ss_pred EEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCC-ceEEEEeecCCC---CCC
Confidence 7666 5666666554211 1122333322 124689999999999998765422 122211000000 000
Q ss_pred CCCCcceeeCCcccccCCccCceEEEEEccC---C---ceEeccCCC-----CCCccceEEEeeCCCCCccEEEEEeecC
Q 003886 252 SWKGQGDWEEDWGETYAGKRQPSLFVININS---G---EVQAVKGIP-----KSLSVGQVVWAPLNEGLHQYLVFVGWSS 320 (789)
Q Consensus 252 ~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~---g---~~~~l~~~~-----~~~~~~~~~wSPDg~~~~~~l~f~~~~~ 320 (789)
.......|...+ + ......|+++|+++ + +.+.+. .+ .+..+..++|||||+. +++..++.
T Consensus 211 ~~~~~~~yp~~G-~---~~~~~~l~v~d~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~wspdg~~----~~~~~~r~ 281 (740)
T 4a5s_A 211 PKTVRVPYPKAG-A---VNPTVKFFVVNTDSLSSVTNATSIQIT-APASMLIGDHYLCDVTWATQERI----SLQWLRRI 281 (740)
T ss_dssp CEEEEEECCBTT-S---CCCEEEEEEEETTSCCSSSCCCEEEEC-CCHHHHTSCEEEEEEEEEETTEE----EEEEEESS
T ss_pred CcceeecCCCCc-C---cCCeeEEEEEECCCCCCCCcceEEEec-CCccCCCCCeEEEEEEEeCCCeE----EEEEeCCC
Confidence 000011222221 1 01234799999999 8 666663 21 3445778999999998 88887654
Q ss_pred CceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-------eeec--CCCCCc-----cCcceecCCCCEE
Q 003886 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-------VVNL--TESISS-----AFFPRFSPDGKFL 386 (789)
Q Consensus 321 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-------~~~L--t~~~~~-----~~~p~~SpDG~~l 386 (789)
.. ...|+++|+ ++++ .+++ ..+.+. ...|.|||||+.|
T Consensus 282 ~~-----------~~~i~~~d~-----------------~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l 333 (740)
T 4a5s_A 282 QN-----------YSVMDICDY-----------------DESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSF 333 (740)
T ss_dssp TT-----------EEEEEEEEE-----------------ETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEE
T ss_pred CC-----------EEEEEEEEC-----------------CCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEE
Confidence 32 236999998 4554 2333 112222 3489999999999
Q ss_pred E-EEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe-
Q 003886 387 V-FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW- 464 (789)
Q Consensus 387 a-~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~- 464 (789)
+ +.+.++ +..+||++|.+++..+++|.+..++.. .+++|++.|||++..
T Consensus 334 ~~~~s~~~--------G~~~l~~~~~~~~~~~~lT~g~~~v~~---------------------~~~~d~~~i~f~~~~~ 384 (740)
T 4a5s_A 334 YKIISNEE--------GYRHICYFQIDKKDCTFITKGTWEVIG---------------------IEALTSDYLYYISNEY 384 (740)
T ss_dssp EEEEECTT--------SCEEEEEEETTCSSCEESCCSSSCEEE---------------------EEEECSSEEEEEESCG
T ss_pred EEEEEcCC--------CceEEEEEECCCCceEecccCCEEEEE---------------------EEEEeCCEEEEEEecC
Confidence 8 666554 457899999998888888876555433 233568899999876
Q ss_pred ---CCeEEEEEEECCCCcEE-EecCC----CCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCC
Q 003886 465 ---GSSQVIISVNVSSGELL-RITPA----ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSS 536 (789)
Q Consensus 465 ---~~~~~l~~~dl~tg~~~-~lt~~----~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~~~~~~~~~~ 536 (789)
.+..+||++++++++.+ +++.. .+.+....||++++++++.++++. |+.+++++..+++ ...
T Consensus 385 ~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~-~p~~~l~~~~~~~-~~~-------- 454 (740)
T 4a5s_A 385 KGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPG-LPLYTLHSSVNDK-GLR-------- 454 (740)
T ss_dssp GGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBS-SCEEEEEETTTTE-EEE--------
T ss_pred CCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCC-CCEEEEEECCCCc-EEE--------
Confidence 56789999999887765 77743 134556789999999999999988 8889988865432 111
Q ss_pred CCCCCchhhhhccccCceeeEeeecccccceeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc-hhhH-HHH
Q 003886 537 PISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYS-KSL 614 (789)
Q Consensus 537 ~~~~~n~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~-~~~ 614 (789)
+...|+.+...+....+...+. ..+ ..+|..++++++.|+++++.+++|+||++||++++... ..|. ...
T Consensus 455 -~l~~n~~~~~~~~~~~~~~~~~------~~~-~~dg~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~ 526 (740)
T 4a5s_A 455 -VLEDNSALDKMLQNVQMPSKKL------DFI-ILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWA 526 (740)
T ss_dssp -EEECCHHHHHHHTTEECCEEEE------EEE-EETTEEEEEEEEECTTCCTTSCEEEEEECCCCTTCCCCCCCCCCSHH
T ss_pred -EeccChhhhhhhhhccCCccEE------EEE-ccCCeEEEEEEEeCCCCCCCCCccEEEEECCCCcccccccccCcCHH
Confidence 1233554444454433322211 133 55889999999999988788899999999999887432 2232 233
Q ss_pred HHHH-HCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCC
Q 003886 615 AFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP 693 (789)
Q Consensus 615 ~~la-~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p 693 (789)
..|+ ++||+|+++|+||++++|..+.......++..+++|+.++++++.+++.+|.+||+|+|||+||+++++++.++|
T Consensus 527 ~~l~~~~G~~Vv~~D~rG~g~~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ri~i~G~S~GG~~a~~~a~~~p 606 (740)
T 4a5s_A 527 TYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGS 606 (740)
T ss_dssp HHHHHTTCCEEEEECCTTCSSSCHHHHGGGTTCTTSHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHTTTC
T ss_pred HHHHhcCCeEEEEEcCCCCCcCChhHHHHHHhhhCcccHHHHHHHHHHHHhcCCcCCccEEEEEECHHHHHHHHHHHhCC
Confidence 4555 599999999999999999999888888888889999999999999888899999999999999999999999999
Q ss_pred CceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCC-ChhhHHHHHhcCccccCCCCCC-CEEEEEeCCCC
Q 003886 694 DKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESP-SVEDLTRFHSKSPISHISKVKT-PTIFLLGAQDL 771 (789)
Q Consensus 694 ~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~~~~~~i~~-P~Lii~G~~D~ 771 (789)
++|+++|+.+|+.++..+. -.+ .+++++.+ ..+..+.|...+|+.++.++++ |+||+||++|.
T Consensus 607 ~~~~~~v~~~p~~~~~~~~-------~~~--------~~~~~~~p~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~ 671 (740)
T 4a5s_A 607 GVFKCGIAVAPVSRWEYYD-------SVY--------TERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADD 671 (740)
T ss_dssp SCCSEEEEESCCCCGGGSB-------HHH--------HHHHHCCSSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCS
T ss_pred CceeEEEEcCCccchHHhh-------hHH--------HHHHcCCCCccccHHHHHhCCHHHHHhcCCCCcEEEEEcCCCC
Confidence 9999999999999865431 111 12233333 2356778889999999999997 99999999999
Q ss_pred CCChHHHHHHHHHCCC
Q 003886 772 RVPVSNGLQVIYHIPF 787 (789)
Q Consensus 772 ~vp~~~~~~l~~~l~~ 787 (789)
+||++++.+++++|++
T Consensus 672 ~v~~~~~~~l~~~l~~ 687 (740)
T 4a5s_A 672 NVHFQQSAQISKALVD 687 (740)
T ss_dssp SSCTHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 9999999999998853
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-49 Score=461.86 Aligned_cols=549 Identities=18% Similarity=0.238 Sum_probs=389.5
Q ss_pred CceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcce--e--cccEEEEeC--CCCCe-EEEEecCCCCCCe
Q 003886 108 GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVE--M--TGASAVVPS--PSGSK-LLVVRNPENESPI 180 (789)
Q Consensus 108 g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~--~--~~~~~~~~S--PdG~~-la~~~~~~~~~~~ 180 (789)
|+.++|...+.+ ...+..||... .+++.++++..+.... . .+...+.|| |||++ |+|..+. ..+
T Consensus 33 ~~~~~~~~~~~~---~~~~~~l~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~---~~~ 103 (662)
T 3azo_A 33 GDEVWWVAPRPA---EAGRATLVRRR---ADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG---DQR 103 (662)
T ss_dssp TTEEEEEEEETT---TTTEEEEEEEC---TTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT---TCC
T ss_pred CCeEEEEecCcc---cCCcEEEEEEC---CCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECC---CCe
Confidence 347888766433 12466788762 3455667765542210 0 001145555 99999 9998764 346
Q ss_pred EEEEecC----CceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCc
Q 003886 181 QFELWSQ----SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ 256 (789)
Q Consensus 181 ~~~i~~~----~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (789)
+|.+..+ ++..+++......|+ .....++|||||++|+|++.+.....
T Consensus 104 l~~~~~~~~g~~~~~~l~~~~~~~~~-----~~~~~~~~spDg~~l~~~~~~~~~~~----------------------- 155 (662)
T 3azo_A 104 LYAFEPDAPGGAVPRPLTPVSAVGGG-----LRWADPVLLPERGEVWCMAEEFTGEG----------------------- 155 (662)
T ss_dssp EEEECTTSTTCCCCEECSCCCCSTTC-----EEEEEEEEETTTTEEEEEEEEECSSS-----------------------
T ss_pred EEEEcCCCCCCCCCEeccCCccCCCC-----ccccCcEECCCCCEEEEEEecccCCC-----------------------
Confidence 8887744 666665543211111 12368999999999999987531100
Q ss_pred ceeeCCcccccCCccCceEEEEEccC------CceEeccCC-CCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeee
Q 003886 257 GDWEEDWGETYAGKRQPSLFVININS------GEVQAVKGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKY 329 (789)
Q Consensus 257 ~~~~~d~g~~~~~~~~~~l~v~d~~~------g~~~~l~~~-~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~ 329 (789)
. .....+|++||+++ ++.+.+ + .....+..++|||||+. |+|+++...... +
T Consensus 156 --------~---~~~~~~i~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~SpDG~~----la~~~~~~~~~~----~ 214 (662)
T 3azo_A 156 --------P---SDVRRFLAAVPLDGSAAADRSAVREL--SDDAHRFVTGPRLSPDGRQ----AVWLAWDHPRMP----W 214 (662)
T ss_dssp --------T---TCEEEEEEEEETTSTTTTCGGGSEES--SCSCSSEECCCEECTTSSE----EEEEEECTTCCT----T
T ss_pred --------C---CCceeEEEEEECCCCccccCCceeEE--EecCCCcccCceECCCCCE----EEEEECCCCCCC----C
Confidence 0 11347899999999 888888 5 44456678999999999 999986542110 0
Q ss_pred eccCCcceEEEecccccchhhhhhhhcCCCC-CC---CeeecCCC-CCccCcceecCCCCEEEEEecCCCCCCCCccccc
Q 003886 330 CYNRPCALYAVRVSLYKSEASELELKESSSE-DL---PVVNLTES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 404 (789)
Q Consensus 330 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~-~~---~~~~Lt~~-~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~ 404 (789)
....||++|+ + ++ +.++|+.. ......|.|||||+ |+|++..+ +..
T Consensus 215 ---~~~~i~~~d~-----------------~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~--------~~~ 265 (662)
T 3azo_A 215 ---EGTELKTARV-----------------TEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRT--------GWW 265 (662)
T ss_dssp ---TCEEEEEEEE-----------------CTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTT--------SSC
T ss_pred ---CCcEEEEEEE-----------------CCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCC--------CCe
Confidence 1247999998 4 45 66677654 46688999999999 88888664 245
Q ss_pred eeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003886 405 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (789)
Q Consensus 405 ~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt 484 (789)
+||++|+.+++.+.++.....+ ..| .|......+.|++|++ +++++.. +...||.+|++++++++++
T Consensus 266 ~l~~~~~~~~~~~~l~~~~~~~----------~~p-~w~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~d~~~~~~~~l~ 332 (662)
T 3azo_A 266 NLHRVDPATGAATQLCRREEEF----------AGP-LWTPGMRWFAPLANGL-IAVVHGK-GAAVLGILDPESGELVDAA 332 (662)
T ss_dssp EEEEECTTTCCEEESSCCSSBS----------SCC-CCSTTCCSEEECTTSC-EEEEEBS-SSCEEEEEETTTTEEEECC
T ss_pred EEEEEECCCCceeecccccccc----------cCc-cccccCceEeEeCCCE-EEEEEEc-CccEEEEEECCCCcEEEec
Confidence 7999998776654444322110 001 1222344567778887 6677777 8899999999999998887
Q ss_pred CCCCCceeEEe-eecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhhccccCcee-eEeeecc
Q 003886 485 PAESNFSWSLL-TLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFS-IMKIPVK 562 (789)
Q Consensus 485 ~~~~~~~~~~~-s~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~i~~~ 562 (789)
..... ...+ +++++.++++++++..|..+|++++.+++ ...+ +..+. ..+....+. ...+
T Consensus 333 ~~~~~--~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~-~~~l---------~~~~~---~~~~~~~~~~~~~~--- 394 (662)
T 3azo_A 333 GPWTE--WAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR-ARTI---------GARHT---DPVDPAYYPEPQIR--- 394 (662)
T ss_dssp SSCCE--EEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC-EEEE---------ESCCC---CSSCGGGSCCCEEE---
T ss_pred CCCCe--EEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc-eEEe---------ecCCc---ccCCccccCcceEE---
Confidence 66542 2345 88999999999999999999999876543 1111 11111 011111111 1222
Q ss_pred cccceeecCCCeeEEEEEEecCCCC----CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCch
Q 003886 563 GVSANLTKGAQKPFEAIFVSSSHKK----DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEE 638 (789)
Q Consensus 563 ~~~~~~~~~~g~~l~~~~~~P~~~~----~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~ 638 (789)
.+...+|..++++++.|++++ +++++|+||++||+++......|....+.|+++||.|+++|+||++|+|.+
T Consensus 395 ----~~~~~dg~~i~~~~~~P~~~~~~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~~~~G~~ 470 (662)
T 3azo_A 395 ----TFTAPDGREIHAHIYPPHSPDFTGPADELPPYVVMAHGGPTSRVPAVLDLDVAYFTSRGIGVADVNYGGSTGYGRA 470 (662)
T ss_dssp ----EEECTTSCEEEEEEECCCCSSEECCTTCCCCEEEEECSSSSSCCCCSCCHHHHHHHTTTCEEEEEECTTCSSSCHH
T ss_pred ----EEEcCCCCEEEEEEECCCCccccCCCCCCccEEEEECCCCCccCcccchHHHHHHHhCCCEEEEECCCCCCCccHH
Confidence 455668899999999998754 457899999999998876555777788899999999999999999999999
Q ss_pred hhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhc-CCCC
Q 003886 639 ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-TTDI 717 (789)
Q Consensus 639 ~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~-~~~~ 717 (789)
+.....+.++..+++|+.++++++++++.+|.+||+|+|||+||+++++++.+ |++|+++|+.+|+.++..+.. ....
T Consensus 471 ~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~ 549 (662)
T 3azo_A 471 YRERLRGRWGVVDVEDCAAVATALAEEGTADRARLAVRGGSAGGWTAASSLVS-TDVYACGTVLYPVLDLLGWADGGTHD 549 (662)
T ss_dssp HHHTTTTTTTTHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHH-CCCCSEEEEESCCCCHHHHHTTCSCG
T ss_pred HHHhhccccccccHHHHHHHHHHHHHcCCcChhhEEEEEECHHHHHHHHHHhC-cCceEEEEecCCccCHHHHhcccccc
Confidence 98877778888889999999999999988999999999999999999999886 999999999999999877654 1111
Q ss_pred CcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 718 PDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
....+. +.+.+... +..+.|...+|+.++.++++|+||+||++|.+||++++.+++++|++.
T Consensus 550 ~~~~~~--------~~~~~~~~-~~~~~~~~~sp~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~~ 611 (662)
T 3azo_A 550 FESRYL--------DFLIGSFE-EFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPEQCDRFLEAVAGC 611 (662)
T ss_dssp GGTTHH--------HHHTCCTT-TCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHHTTS
T ss_pred hhhHhH--------HHHhCCCc-cchhHHHhhChHhHhccCCCCEEEEeeCCCCCCCHHHHHHHHHHHHHc
Confidence 111111 11222222 556778889999999999999999999999999999999999998753
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-47 Score=453.22 Aligned_cols=556 Identities=14% Similarity=0.147 Sum_probs=384.1
Q ss_pred CCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecC-Cccee-cccEEEEeCCCCCeEEEEecCCC-CCCeE
Q 003886 105 NGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAP-FPVEM-TGASAVVPSPSGSKLLVVRNPEN-ESPIQ 181 (789)
Q Consensus 105 spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~-~~~~~-~~~~~~~~SPdG~~la~~~~~~~-~~~~~ 181 (789)
+|||++++|..... ++....||+.+.. +++.+.|.... +.... ..+..++|||||++|||..+..+ +..++
T Consensus 80 ~~dG~~~~~~~~~~----~~~~~~l~~~~~~--~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i 153 (710)
T 2xdw_A 80 FKKGKRYFYFYNTG----LQNQRVLYVQDSL--EGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTI 153 (710)
T ss_dssp EEETTEEEEEEECS----SCSSCEEEEESST--TSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEE
T ss_pred EEECCEEEEEEEcC----CceEEEEEEEcCC--CCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEE
Confidence 48999999987642 3445688887653 33333332211 11000 13668999999999999987652 22367
Q ss_pred EEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceee
Q 003886 182 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (789)
Q Consensus 182 ~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (789)
++++ .+++..+.+...... ..++|||||+.|+|++.+...... .
T Consensus 154 ~v~d~~tg~~~~~~~~~~~~----------~~~~wspDg~~l~~~~~~~~~~~~--------~----------------- 198 (710)
T 2xdw_A 154 KFMKVDGAKELPDVLERVKF----------SCMAWTHDGKGMFYNAYPQQDGKS--------D----------------- 198 (710)
T ss_dssp EEEETTTTEEEEEEEEEECS----------CCEEECTTSSEEEEEECCCCSSCC--------S-----------------
T ss_pred EEEECCCCCCCcccccCccc----------ceEEEEeCCCEEEEEEECCccccc--------c-----------------
Confidence 7777 566665543322122 689999999999999876431100 0
Q ss_pred CCcccccCCccCceEEEEEccCCceE--eccCCC-CCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcce
Q 003886 261 EDWGETYAGKRQPSLFVININSGEVQ--AVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 337 (789)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~--~l~~~~-~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l 337 (789)
+..........|+++++.+++.+ .+.... .......+.|||||+. |+|.+.+... ....|
T Consensus 199 ---~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~----l~~~~~~~~~----------~~~~l 261 (710)
T 2xdw_A 199 ---GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY----VLLSIREGCD----------PVNRL 261 (710)
T ss_dssp ---SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE----EEEEEECSSS----------SCCEE
T ss_pred ---ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE----EEEEEEccCC----------CccEE
Confidence 00000013467999999887632 221111 1223568899999999 9998853321 13589
Q ss_pred EEEecccccchhhhhhhhcCCCCC------C--CeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEe
Q 003886 338 YAVRVSLYKSEASELELKESSSED------L--PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 409 (789)
Q Consensus 338 ~~~d~~~~~~~~~~~~~~~~~~~~------~--~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~ 409 (789)
|++|+ .+ + ..+.|+.+.... ...|+|||++|+|.++.+. ...+|+++
T Consensus 262 ~~~d~-----------------~~~~~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~s~~~~-------~~~~l~~~ 316 (710)
T 2xdw_A 262 WYCDL-----------------QQESNGITGILKWVKLIDNFEGE-YDYVTNEGTVFTFKTNRHS-------PNYRLINI 316 (710)
T ss_dssp EEEEG-----------------GGSSSSSCSSCCCEEEECSSSSC-EEEEEEETTEEEEEECTTC-------TTCEEEEE
T ss_pred EEEEC-----------------cccccccCCccceEEeeCCCCcE-EEEEeccCCEEEEEECCCC-------CCCEEEEE
Confidence 99998 33 3 467777654433 3469999999999987641 34689999
Q ss_pred ecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc-EEEecCCCC
Q 003886 410 DWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE-LLRITPAES 488 (789)
Q Consensus 410 d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~-~~~lt~~~~ 488 (789)
|+.+++... ...++. .. +. ..+..+.|++ +..++++...++...|+.+++.+|+ .+.++...+
T Consensus 317 d~~~~~~~~----~~~l~~---~~-~~-------~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~ 380 (710)
T 2xdw_A 317 DFTDPEESK----WKVLVP---EH-EK-------DVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVG 380 (710)
T ss_dssp ETTSCCGGG----CEEEEC---CC-SS-------CEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSS
T ss_pred eCCCCCccc----ceeccC---CC-CC-------CeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCc
Confidence 997754210 011111 00 00 0122456774 4568888888999999999996666 566765544
Q ss_pred CceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhhccccCceeeEeeeccccccee
Q 003886 489 NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANL 568 (789)
Q Consensus 489 ~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~i~~~~~~~~~ 568 (789)
......++++++.+++.++++++|+.+|++++.+++....+ +... ++.. ++...+...++ .+
T Consensus 381 ~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~~~-l~~~--~~~~--------~~~~~~~~~~~-------~~ 442 (710)
T 2xdw_A 381 SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRV-FREV--TVKG--------IDASDYQTVQI-------FY 442 (710)
T ss_dssp EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEE-EEEC--CCTT--------CCGGGEEEEEE-------EE
T ss_pred eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCccceEE-eeec--ccCC--------cCccccEEEEE-------EE
Confidence 33344567789999999999999999999998754310111 1110 1111 12222333444 56
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHH-CCcEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
++.||.+++++++.|++++..++.|+||++|||++......|......|++ +||+|+++|+||++++|..+.......+
T Consensus 443 ~~~dg~~i~~~~~~p~~~~~~~~~P~vl~~hGg~~~~~~~~~~~~~~~l~~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~ 522 (710)
T 2xdw_A 443 PSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILAN 522 (710)
T ss_dssp ECTTSCEEEEEEEEETTCCCSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTTHHHHHHTTSGGG
T ss_pred EcCCCCEEEEEEEecCCCCCCCCccEEEEEcCCCCCcCCCcccHHHHHHHHhCCcEEEEEccCCCCCCChHHHHhhhhhc
Confidence 777899999999999977667889999999999887665667666667777 9999999999999999998877655566
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhcc
Q 003886 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 727 (789)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~ 727 (789)
+...++|+.+++++|++++++|++||+|+|+|+||+++++++.++|++|+++|+.+|+.++..+........|. ..++
T Consensus 523 ~~~~~~D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~a~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~~--~~~g 600 (710)
T 2xdw_A 523 KQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWT--TDYG 600 (710)
T ss_dssp THHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGH--HHHC
T ss_pred CCchHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHHhCccceeEEEEcCCcccHhhccccCCChhHH--HhCC
Confidence 66678999999999999998999999999999999999999999999999999999999876654332111121 1121
Q ss_pred CccccccCCCCChhhHHHHHhcCccccCC-----CCCC-CEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 728 SKGKDSFTESPSVEDLTRFHSKSPISHIS-----KVKT-PTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~-----~i~~-P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.....+..+.+..++|+.++. ++++ |+||+||++|.+||+.++.+++++|++
T Consensus 601 --------~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~pP~Li~~G~~D~~v~~~~~~~~~~~l~~ 658 (710)
T 2xdw_A 601 --------CSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQY 658 (710)
T ss_dssp --------CTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHHH
T ss_pred --------CCCCHHHHHHHHHhCcHhhhcccccccCCCCcEEEEEeCCCCccChhHHHHHHHHHHh
Confidence 122335566778899999998 8997 999999999999999999999998863
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-49 Score=457.50 Aligned_cols=521 Identities=17% Similarity=0.225 Sum_probs=377.1
Q ss_pred HHHHHHHHHHHhhcCccccceEEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccE
Q 003886 78 EYASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGAS 157 (789)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~~~~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~ 157 (789)
+|..+.+.++++...|-. ... .||||++|+|..... ....||.. ++++.+++|.... ..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~--~~~---~~~DG~~la~~s~~~------g~~~lw~~----~~g~~~~lt~~~~----~~~~ 68 (582)
T 3o4h_A 8 EFSRIVRDVERLIAVEKY--SLQ---GVVDGDKLLVVGFSE------GSVNAYLY----DGGETVKLNREPI----NSVL 68 (582)
T ss_dssp CHHHHHHHHHHHHHSCEE--EEE---EEETTTEEEEEEEET------TEEEEEEE----ETTEEEECCSSCC----SEEC
T ss_pred cHHHHHHHHHHHhccchh--eee---cCCCCCeEEEEEccC------CceeEEEE----cCCCcEeeecccc----cccc
Confidence 466666667766666521 222 359999999976431 34567774 3456667765441 2577
Q ss_pred EEEeCCCCCeEEEEecC--CCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 158 AVVPSPSGSKLLVVRNP--ENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 158 ~~~~SPdG~~la~~~~~--~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
.|+|||| +++|.+.. .+....+|.+.. .+...+++.. .+. ...+|||||+.++|++...
T Consensus 69 ~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~-~~~----------~~~~~s~dg~~~~~~s~~~---- 131 (582)
T 3o4h_A 69 DPHYGVG--RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV-KPM----------RILSGVDTGEAVVFTGATE---- 131 (582)
T ss_dssp EECTTCS--EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTS-CSB----------EEEEEEECSSCEEEEEECS----
T ss_pred cccCCCC--eEEEEeccCCCCcceEEEEEeccCCCccccccCC-CCc----------eeeeeCCCCCeEEEEecCC----
Confidence 8999999 67787764 223335666654 5554433221 122 4579999999999986542
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (789)
..+.+||+++|+.+++. .... ..++|||||+. |
T Consensus 132 ---------------------------------------~~~~l~d~~~g~~~~l~--~~~~--~~~~~spDG~~----l 164 (582)
T 3o4h_A 132 ---------------------------------------DRVALYALDGGGLRELA--RLPG--FGFVSDIRGDL----I 164 (582)
T ss_dssp ---------------------------------------SCEEEEEEETTEEEEEE--EESS--CEEEEEEETTE----E
T ss_pred ---------------------------------------CCceEEEccCCcEEEee--cCCC--ceEEECCCCCE----E
Confidence 22347899999988884 2222 78999999999 9
Q ss_pred EEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 314 ~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
+|.+...+. ...||++|+ ++++.++|+.+.+....|+|||||++|+ .+..+
T Consensus 165 a~~~~~~~~-----------~~~i~~~d~-----------------~~g~~~~l~~~~~~~~~~~~SpDG~~l~-~~~~~ 215 (582)
T 3o4h_A 165 AGLGFFGGG-----------RVSLFTSNL-----------------SSGGLRVFDSGEGSFSSASISPGMKVTA-GLETA 215 (582)
T ss_dssp EEEEEEETT-----------EEEEEEEET-----------------TTCCCEEECCSSCEEEEEEECTTSCEEE-EEECS
T ss_pred EEEEEcCCC-----------CeEEEEEcC-----------------CCCCceEeecCCCccccceECCCCCEEE-EccCC
Confidence 998854321 136999998 7888889998888889999999999998 44332
Q ss_pred CCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCc--------cccCCCEEEEEEEeC
Q 003886 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP--------WLSDGCTMLLSSIWG 465 (789)
Q Consensus 394 ~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~--------ws~Dg~~l~~~~~~~ 465 (789)
+..+|++||+++++.+ ++..... .+..+. |+||| .+++++..+
T Consensus 216 --------~~~~i~~~d~~~~~~~-~~~~~~~-------------------~~~~~~~~~~~~~~~spdg-~~~~~~~~~ 266 (582)
T 3o4h_A 216 --------REARLVTVDPRDGSVE-DLELPSK-------------------DFSSYRPTAITWLGYLPDG-RLAVVARRE 266 (582)
T ss_dssp --------SCEEEEEECTTTCCEE-ECCCSCS-------------------HHHHHCCSEEEEEEECTTS-CEEEEEEET
T ss_pred --------CeeEEEEEcCCCCcEE-EccCCCc-------------------ChhhhhhccccceeEcCCC-cEEEEEEcC
Confidence 2357999999887654 2221100 111234 99999 688999989
Q ss_pred CeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhh
Q 003886 466 SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKV 545 (789)
Q Consensus 466 ~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 545 (789)
+...||.+ |+..+. .. +.+....++ ++ .++++.++..+|+++++++..+ + .+. + .+++..
T Consensus 267 g~~~l~~~----g~~~~~-~~-~~v~~~~~s-dg-~~l~~~s~~~~p~~l~~~d~~~-~-~~~---------l-~~~~~~ 326 (582)
T 3o4h_A 267 GRSAVFID----GERVEA-PQ-GNHGRVVLW-RG-KLVTSHTSLSTPPRIVSLPSGE-P-LLE---------G-GLPEDL 326 (582)
T ss_dssp TEEEEEET----TEEECC-CS-SEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCC-E-EEC---------C-CCCHHH
T ss_pred CcEEEEEE----CCeecc-CC-CceEEEEec-CC-EEEEEEcCCCCCCeEEEEcCCC-c-eEE---------E-ecCCcc
Confidence 98888876 665542 22 223345667 54 5668888899999999988653 1 111 1 111110
Q ss_pred hhccccCce-eeEeeecccccceeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEE
Q 003886 546 KSLLSSRQF-SIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSL 624 (789)
Q Consensus 546 ~~~l~~~~~-~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V 624 (789)
. ..+ ....+ .++..+|.+++++++.|++.+ .++|+||++||+++......|....+.|+++||.|
T Consensus 327 ~-----~~~~~~~~~-------~~~~~~g~~i~~~~~~p~~~~--~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v 392 (582)
T 3o4h_A 327 R-----RSIAGSRLV-------WVESFDGSRVPTYVLESGRAP--TPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHV 392 (582)
T ss_dssp H-----HTEEEEEEE-------EEECTTSCEEEEEEEEETTSC--SSEEEEEEECSSSSCCCCSSCCHHHHHHHHTTCEE
T ss_pred c-----cccCcceEE-------EEECCCCCEEEEEEEcCCCCC--CCCcEEEEECCCcccccccccCHHHHHHHhCCCEE
Confidence 0 111 22233 556678999999999998643 38999999999988766667788889999999999
Q ss_pred EEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCC
Q 003886 625 LIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 704 (789)
Q Consensus 625 ~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~p 704 (789)
+++|+||++|+|.++.......++...++|+.++++++++++.+| +|+|+|||+||+++++++.++|++|+++|+.+|
T Consensus 393 ~~~d~rG~~~~G~s~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d--~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~ 470 (582)
T 3o4h_A 393 VMPNYRGSTGYGEEWRLKIIGDPCGGELEDVSAAARWARESGLAS--ELYIMGYSYGGYMTLCALTMKPGLFKAGVAGAS 470 (582)
T ss_dssp EEECCTTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHHTTCEE--EEEEEEETHHHHHHHHHHHHSTTTSSCEEEESC
T ss_pred EEeccCCCCCCchhHHhhhhhhcccccHHHHHHHHHHHHhCCCcc--eEEEEEECHHHHHHHHHHhcCCCceEEEEEcCC
Confidence 999999999999999888778888888999999999999997777 999999999999999999999999999999999
Q ss_pred ccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHH
Q 003886 705 LCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYH 784 (789)
Q Consensus 705 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~ 784 (789)
+.++..+....+.....+.+ .+++ +..+.+...+|+.++.++++|+|++||++|.+||++++.+++++
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~--------~~~~----~~~~~~~~~sp~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~ 538 (582)
T 3o4h_A 471 VVDWEEMYELSDAAFRNFIE--------QLTG----GSREIMRSRSPINHVDRIKEPLALIHPQNASRTPLKPLLRLMGE 538 (582)
T ss_dssp CCCHHHHHHTCCHHHHHHHH--------HHTT----TCHHHHHHTCGGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHH
T ss_pred ccCHHHHhhcccchhHHHHH--------HHcC----cCHHHHHhcCHHHHHhcCCCCEEEEecCCCCCcCHHHHHHHHHH
Confidence 99987766543322100111 1111 45567888999999999999999999999999999999999998
Q ss_pred CCC
Q 003886 785 IPF 787 (789)
Q Consensus 785 l~~ 787 (789)
|++
T Consensus 539 l~~ 541 (582)
T 3o4h_A 539 LLA 541 (582)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=474.51 Aligned_cols=576 Identities=16% Similarity=0.177 Sum_probs=381.9
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 180 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (789)
...+||||++|+|...............+|++++.+ ++.++++.... ....+..++|||||++|||+++. +
T Consensus 65 ~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~~--~~~~~~~~~~SPdG~~la~~~~~-----~ 135 (723)
T 1xfd_A 65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH--GDPQSLDPPEV--SNAKLQYAGWGPKGQQLIFIFEN-----N 135 (723)
T ss_dssp EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS--CCCEECCCTTC--CSCCCSBCCBCSSTTCEEEEETT-----E
T ss_pred eEEECCCCCEEEEEecCccceeecceeeEEEEECCC--CceEeccCCcc--ccccccccEECCCCCEEEEEECC-----e
Confidence 345689999999986543322223346888988743 33344543220 00126689999999999999873 4
Q ss_pred EEEEe-cCCceeEEEecCC-C-----ccccccCCCc---ccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCC
Q 003886 181 QFELW-SQSQLEKEFHVPQ-T-----VHGSVYADGW---FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDC 250 (789)
Q Consensus 181 ~~~i~-~~~~~~~~~~~~~-~-----~~g~v~~d~~---~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (789)
++.++ .+++..+++.... . +.+++|.++. ...++|||||++|||.+.+.... ..|....... . .
T Consensus 136 i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~-~~~~~~~~~~-~----~ 209 (723)
T 1xfd_A 136 IYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRV-PIMELPTYTG-S----I 209 (723)
T ss_dssp EEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTS-CEEEECCCSS-S----S
T ss_pred EEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCcc-ceEEeeccCC-c----C
Confidence 77766 5667777665421 1 1112222221 25799999999999998765321 1222110000 0 0
Q ss_pred CCCCCcceeeCCcccccCCccCceEEEEEccCCce-EeccCCCC-----CCccceEEEeeCCCCCccEEEEEeecCCcee
Q 003886 251 NSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPK-----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRK 324 (789)
Q Consensus 251 ~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~-~~l~~~~~-----~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~ 324 (789)
........|.++ |.. .....|++||+.+++. +.+. .+. ...+..++|||||+. |++...+..
T Consensus 210 ~~~~~~~~~~~~-G~~---~~~~~l~~~d~~~~~~~~~l~-~~~~~~~~~~~~~~~~~SpDg~~----l~~~~~~~~--- 277 (723)
T 1xfd_A 210 YPTVKPYHYPKA-GSE---NPSISLHVIGLNGPTHDLEMM-PPDDPRMREYYITMVKWATSTKV----AVTWLNRAQ--- 277 (723)
T ss_dssp SCCCEEEECCBT-TSC---CCEEEEEEEESSSSCCCEECC-CCCCGGGSSEEEEEEEESSSSEE----EEEEEETTS---
T ss_pred CCcceeccCCCC-CCC---CCeeEEEEEECCCCceeEEee-CCccCCCccceeEEEEEeCCCeE----EEEEEcCCC---
Confidence 001112233333 221 1245899999999884 6663 111 335678999999997 877764432
Q ss_pred eeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC--CCcc----CcceecCCCCEEEEE-ecCCCCCC
Q 003886 325 LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--ISSA----FFPRFSPDGKFLVFL-SAKSSVDS 397 (789)
Q Consensus 325 ~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~--~~~~----~~p~~SpDG~~la~~-s~~~~~~~ 397 (789)
....|+++|+ ++++...+... .+.. ..|+|||||++|+|. +.++
T Consensus 278 --------~~~~i~~~d~-----------------~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~---- 328 (723)
T 1xfd_A 278 --------NVSILTLCDA-----------------TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ---- 328 (723)
T ss_dssp --------CEEEEEEEET-----------------TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC----
T ss_pred --------CeEEEEEEeC-----------------CCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc----
Confidence 2237999998 66666555321 2222 489999999999998 4443
Q ss_pred CCccccceeEEee-cCCCC---CCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeC--CeEEEE
Q 003886 398 GAHSATDSLHRID-WPTNG---NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG--SSQVII 471 (789)
Q Consensus 398 g~~~~~~~L~~~d-~~~~~---~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~--~~~~l~ 471 (789)
|.+....+|+++| ..++. .+.++.+..++.. .+.|+|||+.|+|.+..+ +...||
T Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~-------------------~~~~spdg~~l~~~~~~~~~~~~~l~ 389 (723)
T 1xfd_A 329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTK-------------------ILAYDEKGNKIYFLSTEDLPRRRQLY 389 (723)
T ss_dssp SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEE-------------------EEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred CCCcceeEEEEEeccCCCCccceeEeecCCeEEEe-------------------eeEEcCCCCEEEEEEcCCCCcceEEE
Confidence 2222356899999 45555 4445433222111 247999999999988765 778999
Q ss_pred EEECCCC-cEEEecCC---CCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhh
Q 003886 472 SVNVSSG-ELLRITPA---ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKS 547 (789)
Q Consensus 472 ~~dl~tg-~~~~lt~~---~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ 547 (789)
.+++.++ +.++++.. ...+....|++||+.+++.+++++.|..+++ +...+ .++.+ + ..|+.+..
T Consensus 390 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~-~~~~~---~~~~~------~-~~~~~~~~ 458 (723)
T 1xfd_A 390 SANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVH-NTTDK---KKMFD------L-ETNEHVKK 458 (723)
T ss_dssp EECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEE-ETTTC---CEEEE------E-ECCHHHHH
T ss_pred EEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEE-ECCCC---CEEEE------e-ccChhhhh
Confidence 9998765 55666642 3334557899999999999999999987654 43222 22211 1 12333333
Q ss_pred ccccCcee-eEeeecccccceeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-chhh--HHHHHHHHHCCcE
Q 003886 548 LLSSRQFS-IMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSY--SKSLAFLSSVGYS 623 (789)
Q Consensus 548 ~l~~~~~~-~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~-~~~~--~~~~~~la~~Gy~ 623 (789)
.+....+. ...+ .++..+| +++++++.|+++++.+++|+||++||+++... ...| ....+.|+++||+
T Consensus 459 ~~~~~~~~~~~~~-------~~~~~~g-~l~~~~~~P~~~~~~~~~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~ 530 (723)
T 1xfd_A 459 AINDRQMPKVEYR-------DIEIDDY-NLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAV 530 (723)
T ss_dssp HHHTSCCCBCCBC-------CEEETTE-EECCBEEBCSSCCSSSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCE
T ss_pred hhhhccCCCceEE-------EEEcCCc-eEEEEEEeCCCCCCCCccCEEEEEcCCCCccccCccccccHHHHHhhcCCEE
Confidence 33333321 2222 4566678 99999999998777788999999999988642 2223 2455677789999
Q ss_pred EEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC----CCceeEE
Q 003886 624 LLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA----PDKFVAA 699 (789)
Q Consensus 624 V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~----p~~~~a~ 699 (789)
|+++|+||++++|..+.......++...++|+.++++++.+++.+|.+||+|+|||+||+++++++.++ |++|+++
T Consensus 531 vv~~d~rG~g~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~ 610 (723)
T 1xfd_A 531 VVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCG 610 (723)
T ss_dssp EECCCCTTCSSSHHHHHHTTTTCTTTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEE
T ss_pred EEEECCCCCccccHHHHHHHHhccCcccHHHHHHHHHHHHhCCCcChhhEEEEEECHHHHHHHHHHHhccccCCCeEEEE
Confidence 999999999998888776666677777899999999999998888999999999999999999999999 9999999
Q ss_pred EEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCC-CCEEEEEeCCCCCCChHHH
Q 003886 700 AARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNG 778 (789)
Q Consensus 700 v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Lii~G~~D~~vp~~~~ 778 (789)
|+.+|+.++..+ ...+.+.+ ++.+. ...+.+...++..++.+++ +|+||+||++|.+||++++
T Consensus 611 v~~~~~~~~~~~-------~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~ 674 (723)
T 1xfd_A 611 SALSPITDFKLY-------ASAFSERY--------LGLHG-LDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHT 674 (723)
T ss_dssp EEESCCCCTTSS-------BHHHHHHH--------HCCCS-SCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSCHHHH
T ss_pred EEccCCcchHHh-------hhhccHhh--------cCCcc-CChhHHHhcChhhHHhhcCCCCEEEEEeCCCCCcCHhHH
Confidence 999998876432 11111111 11111 1111344556667788999 7999999999999999999
Q ss_pred HHHHHHCC
Q 003886 779 LQVIYHIP 786 (789)
Q Consensus 779 ~~l~~~l~ 786 (789)
.+++++|+
T Consensus 675 ~~~~~~l~ 682 (723)
T 1xfd_A 675 AELITQLI 682 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999885
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-47 Score=456.24 Aligned_cols=559 Identities=17% Similarity=0.208 Sum_probs=381.9
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeecCC-CCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCC
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKEN-ENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESP 179 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~ 179 (789)
...+||||++|+|... ..||++++.+.. ...++++... ..+..++|||||++|||+++.
T Consensus 113 ~~~~SpDg~~l~~~~~----------~~i~~~d~~~~~~~~~~~l~~~~-----~~~~~~~~SPDG~~la~~~~~----- 172 (741)
T 2ecf_A 113 DYQWSPDAQRLLFPLG----------GELYLYDLKQEGKAAVRQLTHGE-----GFATDAKLSPKGGFVSFIRGR----- 172 (741)
T ss_dssp CCEECTTSSEEEEEET----------TEEEEEESSSCSTTSCCBCCCSS-----SCEEEEEECTTSSEEEEEETT-----
T ss_pred eeEECCCCCEEEEEeC----------CcEEEEECCCCCcceEEEcccCC-----cccccccCCCCCCEEEEEeCC-----
Confidence 4456899999999753 478888874321 0445565443 457889999999999999864
Q ss_pred eEEEEe-cCCceeEEEecCCC-----ccccccCC--CcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCC
Q 003886 180 IQFELW-SQSQLEKEFHVPQT-----VHGSVYAD--GWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCN 251 (789)
Q Consensus 180 ~~~~i~-~~~~~~~~~~~~~~-----~~g~v~~d--~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (789)
+++.++ .+++..+++..... ...+++.+ .....++|||||++|+|.+.+..... .+.. ....++.
T Consensus 173 ~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~-~~~~-----~~~~p~~- 245 (741)
T 2ecf_A 173 NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVP-VQKR-----YEVYADR- 245 (741)
T ss_dssp EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSC-EEEE-----EEECSSC-
T ss_pred cEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCc-eEec-----CCCCCCc-
Confidence 477666 45555554432111 00111110 01267999999999999987643211 0000 0000000
Q ss_pred CCCCcceeeCCcccccCCccCceEEEEEccC-CceEeccCC-CCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeee
Q 003886 252 SWKGQGDWEEDWGETYAGKRQPSLFVININS-GEVQAVKGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKY 329 (789)
Q Consensus 252 ~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-g~~~~l~~~-~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~ 329 (789)
.......|... |+ ......|++||+++ ++.+.+... .....+..++| |||+. |++.+.....
T Consensus 246 ~~~~~~~~~~~-g~---~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~----l~~~~~~~~~------- 309 (741)
T 2ecf_A 246 TDVIEQRYPAA-GD---ANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQH----LSFQRQSRDQ------- 309 (741)
T ss_dssp EEEEEEECCBT-TS---CCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTE----EEEEEEETTS-------
T ss_pred ccceEeecCCC-CC---CCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCE----EEEEEecccC-------
Confidence 00000011111 11 11234899999999 988777311 22345678999 99999 9988742221
Q ss_pred eccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCC-----ccCcceecCCCCEEEEEecCCCCCCCCccccc
Q 003886 330 CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS-----SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 404 (789)
Q Consensus 330 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~-----~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~ 404 (789)
....|+++|+ .+++.+.+..... ....++|||||+ +++.+..+ +..
T Consensus 310 ---~~~~i~~~d~-----------------~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~--------g~~ 360 (741)
T 2ecf_A 310 ---KKLDLVEVTL-----------------ASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSERT--------GFQ 360 (741)
T ss_dssp ---SEEEEEEEET-----------------TTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECTT--------SSC
T ss_pred ---CeEEEEEEEC-----------------CCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecCC--------Ccc
Confidence 2347999998 6666666543321 346899999999 66666554 346
Q ss_pred eeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCC-ccccCCCEEEEEEEeCC--eEEEEEEECCCCcEE
Q 003886 405 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN-PWLSDGCTMLLSSIWGS--SQVIISVNVSSGELL 481 (789)
Q Consensus 405 ~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~-~ws~Dg~~l~~~~~~~~--~~~l~~~dl~tg~~~ 481 (789)
+||.+|..++ .+.++..... +..+ .|+|||+.|++.+..++ ...||.+++.++..+
T Consensus 361 ~l~~~~~~~~-~~~l~~~~~~--------------------v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~ 419 (741)
T 2ecf_A 361 HLYRIDSKGK-AAALTHGNWS--------------------VDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQ 419 (741)
T ss_dssp EEEEECSSSC-EEESCCSSSC--------------------EEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCE
T ss_pred EEEEEcCCCC-eeeeeecceE--------------------EEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCee
Confidence 7999987654 4444332211 1123 49999999999887665 778999998777788
Q ss_pred EecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchh-hhh-ccccC--ce-ee
Q 003886 482 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEK-VKS-LLSSR--QF-SI 556 (789)
Q Consensus 482 ~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~-~~~-~l~~~--~~-~~ 556 (789)
+++...+ .....|++||+.+++.++++..|+.+++++..++. .+. ++. |.. +.. .+... .+ ..
T Consensus 420 ~l~~~~~-~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~-~~~---------l~~-~~~~~~~~~~~~~~~~~~~~ 487 (741)
T 2ecf_A 420 RLSKAPG-MHSASFARNASVYVDSWSNNSTPPQIELFRANGEK-IAT---------LVE-NDLADPKHPYARYREAQRPV 487 (741)
T ss_dssp ECCCSCS-EEEEEECTTSSEEEEEEEETTEEEEEEEEETTSCE-EEC---------SSC-CCSSSTTSTTHHHHTTCCCE
T ss_pred ecccCCC-ceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCe-EEE---------ecc-CcccccccchhhhhccCCCc
Confidence 8887443 44578999999999999999999999999875332 111 111 110 000 11111 12 22
Q ss_pred EeeecccccceeecCCC-eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc-hhhH-----HHHHHHHHCCcEEEEEcC
Q 003886 557 MKIPVKGVSANLTKGAQ-KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYS-----KSLAFLSSVGYSLLIVNY 629 (789)
Q Consensus 557 ~~i~~~~~~~~~~~~~g-~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~-----~~~~~la~~Gy~V~~~d~ 629 (789)
..+ .++..+| ..++++++.|+++++.+++|+||++||+++.... ..|. ...+.|+++||.|+++|+
T Consensus 488 ~~~-------~~~~~~g~~~l~~~~~~P~~~~~~~~~p~vv~~hG~~~~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~ 560 (741)
T 2ecf_A 488 EFG-------TLTAADGKTPLNYSVIKPAGFDPAKRYPVAVYVYGGPASQTVTDSWPGRGDHLFNQYLAQQGYVVFSLDN 560 (741)
T ss_dssp EEE-------EEECTTSSCEEEEEEECCSSCCTTSCEEEEEECCCSTTCCSCSSCCCCSHHHHHHHHHHHTTCEEEEECC
T ss_pred EEE-------EEEcCCCCEEEEEEEEeCCCCCCCCCcCEEEEEcCCCCcccccccccccchhHHHHHHHhCCCEEEEEec
Confidence 223 4566788 9999999999876667789999999998876421 2343 467889999999999999
Q ss_pred CCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchh
Q 003886 630 RGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709 (789)
Q Consensus 630 rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~ 709 (789)
||+++++..+.......++..+++|+.++++++.+++.+|.+||+|+|||+||++++.++.++|++|+++|+.+|+.++.
T Consensus 561 rG~g~s~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~ 640 (741)
T 2ecf_A 561 RGTPRRGRDFGGALYGKQGTVEVADQLRGVAWLKQQPWVDPARIGVQGWSNGGYMTLMLLAKASDSYACGVAGAPVTDWG 640 (741)
T ss_dssp TTCSSSCHHHHHTTTTCTTTHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCGG
T ss_pred CCCCCCChhhhHHHhhhcccccHHHHHHHHHHHHhcCCCChhhEEEEEEChHHHHHHHHHHhCCCceEEEEEcCCCcchh
Confidence 99888888877777777887889999999999999888899999999999999999999999999999999999998764
Q ss_pred hhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 710 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.+. ..+. +.++..+ .+..+.|...+|...+.++++|+||+||++|.+||++++.+++++|++
T Consensus 641 ~~~-------~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~~ 702 (741)
T 2ecf_A 641 LYD-------SHYT--------ERYMDLP-ARNDAGYREARVLTHIEGLRSPLLLIHGMADDNVLFTNSTSLMSALQK 702 (741)
T ss_dssp GSB-------HHHH--------HHHHCCT-GGGHHHHHHHCSGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHHHH
T ss_pred hhc-------cccc--------hhhcCCc-ccChhhhhhcCHHHHHhhCCCCEEEEccCCCCCCCHHHHHHHHHHHHH
Confidence 321 0111 1122222 345667778899999999999999999999999999999999998754
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-47 Score=447.10 Aligned_cols=551 Identities=14% Similarity=0.146 Sum_probs=383.5
Q ss_pred ecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcce--ecccEEEEeCCCCCeEEEEecCCC-CC
Q 003886 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVE--MTGASAVVPSPSGSKLLVVRNPEN-ES 178 (789)
Q Consensus 102 ~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~--~~~~~~~~~SPdG~~la~~~~~~~-~~ 178 (789)
+..+|||++++|..... ++....||+.+. .+++.++|+....-.+ ...+..++|||||++|||..+..+ +.
T Consensus 73 ~~p~~dG~~~~~~~~~~----~~~~~~l~~~~~--~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~ 146 (695)
T 2bkl_A 73 STPSRRNGRFFYVRTHK----DKEKAILYWRQG--ESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADE 146 (695)
T ss_dssp CCCEEETTEEEEEEECT----TCSSCEEEEEES--TTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSC
T ss_pred CCCEEECCEEEEEEEcC----CCeEEEEEEEcC--CCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCce
Confidence 34458999999987643 234668898775 3445556654321000 013678999999999999987653 34
Q ss_pred CeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcc
Q 003886 179 PIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 257 (789)
Q Consensus 179 ~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (789)
.++++++ .+++..+...+.. ..+..++|||||+.|+|++.+.....
T Consensus 147 ~~i~v~dl~tg~~~~~~~~~~---------~~~~~~~wspDg~~l~~~~~d~~~~~------------------------ 193 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSKVDVIEG---------GKYATPKWTPDSKGFYYEWLPTDPSI------------------------ 193 (695)
T ss_dssp CEEEEEETTTCCBCSSCCBSC---------CTTCCCEECTTSSEEEEEECCCCTTS------------------------
T ss_pred EEEEEEECCCCCCcCCcccCc---------ccccceEEecCCCEEEEEEecCCCCC------------------------
Confidence 5677777 4554321111111 11268999999999999987642110
Q ss_pred eeeCCcccccCCccCceEEEEEccCCce--EeccCCCC-CCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCC
Q 003886 258 DWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 334 (789)
Q Consensus 258 ~~~~d~g~~~~~~~~~~l~v~d~~~g~~--~~l~~~~~-~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~ 334 (789)
..-......+|+++++.+++. +.+..... ...+..+.|||||+. |++.+.... ..
T Consensus 194 -------~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~----l~~~~~~~~-----------~~ 251 (695)
T 2bkl_A 194 -------KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY----LFVYILRGW-----------SE 251 (695)
T ss_dssp -------CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC----EEEEEEETT-----------TE
T ss_pred -------ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE----EEEEEeCCC-----------Cc
Confidence 000011346899999998863 23321122 235668999999999 999885431 12
Q ss_pred cceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 335 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 335 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
..||+++. .+++.+.|+........+.| |||+ |++.++.+ ....+|+++|+.++
T Consensus 252 ~~l~~~~~-----------------~~~~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~-------~~~~~l~~~d~~~~ 305 (695)
T 2bkl_A 252 NDVYWKRP-----------------GEKDFRLLVKGVGAKYEVHA-WKDR-FYVLTDEG-------APRQRVFEVDPAKP 305 (695)
T ss_dssp EEEEEECT-----------------TCSSCEEEEECSSCCEEEEE-ETTE-EEEEECTT-------CTTCEEEEEBTTBC
T ss_pred eEEEEEcC-----------------CCCceEEeecCCCceEEEEe-cCCc-EEEEECCC-------CCCCEEEEEeCCCC
Confidence 37999886 56678888877666677777 7888 88887653 13468999998775
Q ss_pred CCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC-CCCceeE
Q 003886 415 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-ESNFSWS 493 (789)
Q Consensus 415 ~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~-~~~~~~~ 493 (789)
+.... ..++. ...+ ..+..+.|+ +..|+++...++...||.++++++..+.+... .+.....
T Consensus 306 ~~~~~----~~l~~---~~~~--------~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~ 368 (695)
T 2bkl_A 306 ARASW----KEIVP---EDSS--------ASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNL 368 (695)
T ss_dssp SGGGC----EEEEC---CCSS--------CEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCC
T ss_pred CccCC----eEEec---CCCC--------CeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEe
Confidence 43110 11111 0000 012234566 45688888889999999999876666666543 3323334
Q ss_pred EeeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhhccccCceeeEeeecccccceeecCCC
Q 003886 494 LLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQ 573 (789)
Q Consensus 494 ~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g 573 (789)
.++++++.+++.++++.+|+.+|++++.+++ ...+ ... +. . +....+...++ .+++.||
T Consensus 369 ~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~-~~~l--~~~--~~-~--------~~~~~~~~~~~-------~~~~~dg 427 (695)
T 2bkl_A 369 MGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK-SELW--AKV--DV-P--------MNPEQYQVEQV-------FYASKDG 427 (695)
T ss_dssp BSCTTCSEEEEEEEETTEEEEEEEEETTTCC-EEEE--EEC--CC-S--------SCGGGEEEEEE-------EEECTTS
T ss_pred ecCCCCCEEEEEEcCCCCCCEEEEEECCCCc-EEEE--ecC--CC-C--------CCHHHCeEEEE-------EEECCCC
Confidence 5678999999999999999999999987653 1111 111 00 1 11112333333 5667789
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHH
Q 003886 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (789)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~ 653 (789)
.+++++++.|++++..+++|+||++|||++......|....+.|+++||+|+++|+||++++|..+.......++...++
T Consensus 428 ~~i~~~~~~p~~~~~~~~~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~~~~~~~~ 507 (695)
T 2bkl_A 428 TKVPMFVVHRKDLKRDGNAPTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEYGKAWHDAGRLDKKQNVFD 507 (695)
T ss_dssp CEEEEEEEEETTCCCSSCCCEEEECCCCTTCCCCCCCCGGGHHHHHTTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHH
T ss_pred CEEEEEEEECCCCCCCCCccEEEEECCCCccccCCCcCHHHHHHHhCCCEEEEEecCCCCCcCHHHHHhhHhhcCCCcHH
Confidence 99999999999776678899999999998876555666666778899999999999999999999877655556666789
Q ss_pred HHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccc
Q 003886 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDS 733 (789)
Q Consensus 654 D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (789)
|+.+++++|++++++|++||+|+|+|+||+++++++.++|++|+++|+.+|+.++..+........| ...++
T Consensus 508 D~~~~~~~l~~~~~~~~~~i~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~--~~~~g------ 579 (695)
T 2bkl_A 508 DFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPELYGAVVCAVPLLDMVRYHLFGSGRTW--IPEYG------ 579 (695)
T ss_dssp HHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGG--HHHHC------
T ss_pred HHHHHHHHHHHcCCCCcccEEEEEECHHHHHHHHHHHhCCcceEEEEEcCCccchhhccccCCCcch--HHHhC------
Confidence 9999999999999999999999999999999999999999999999999999987654322111111 11121
Q ss_pred cCCCCChhhHHHHHhcCccccCCCCC--CCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 734 FTESPSVEDLTRFHSKSPISHISKVK--TPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 734 ~~~~~~~~~~~~~~~~sp~~~~~~i~--~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.....+..+.+..++|+.++.+++ +|+||+||++|.+||+.++.+++++|+.
T Consensus 580 --~~~~~~~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~ 633 (695)
T 2bkl_A 580 --TAEKPEDFKTLHAYSPYHHVRPDVRYPALLMMAADHDDRVDPMHARKFVAAVQN 633 (695)
T ss_dssp --CTTSHHHHHHHHHHCGGGCCCSSCCCCEEEEEEETTCSSSCTHHHHHHHHHHHT
T ss_pred --CCCCHHHHHHHHhcChHhhhhhcCCCCCEEEEeeCCCCCCChHHHHHHHHHHHh
Confidence 111234556778899999999877 6999999999999999999999999865
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=453.98 Aligned_cols=565 Identities=15% Similarity=0.139 Sum_probs=376.3
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCc---cceeecCCcceecccEEEEeCCCCCeEEEEecCCCC
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS---VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE 177 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~ 177 (789)
.+.+||||++|+|.......-.......+|++++.+ ++. .+++ ..+..++|||||++|||+++.
T Consensus 64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~--g~~~~~~~l~--------~~~~~~~~SPDG~~la~~~~~--- 130 (719)
T 1z68_A 64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN--GEFVRGNELP--------RPIQYLCWSPVGSKLAYVYQN--- 130 (719)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT--TEECCSSCCC--------SSBCCEEECSSTTCEEEEETT---
T ss_pred eEEECCCCCeEEEEecCceeEEeecceEEEEEECCC--CccccceecC--------cccccceECCCCCEEEEEECC---
Confidence 455689999999986532100111246889888633 333 3332 246789999999999999754
Q ss_pred CCeEEEEe-cCCceeEEEecCC------CccccccCCC---cccceeecCCCCEEEEEeecCCCCCCCccCC-CCCCCCC
Q 003886 178 SPIQFELW-SQSQLEKEFHVPQ------TVHGSVYADG---WFEGISWNSDETLIAYVAEEPSPSKPTFSLG-STKGGSS 246 (789)
Q Consensus 178 ~~~~~~i~-~~~~~~~~~~~~~------~~~g~v~~d~---~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~-~~~~~~~ 246 (789)
.++..+ .+++..+++.... +...++|.++ ....++|||||++|||.+.+.... ..+... +....
T Consensus 131 --~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~-~~~~~~~~~~~~-- 205 (719)
T 1z68_A 131 --NIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDI-PVIAYSYYGDEQ-- 205 (719)
T ss_dssp --EEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTS-CEEEEEECCSSS--
T ss_pred --eEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCC-ceEEeeccCCCC--
Confidence 366555 4566555442211 1111222211 124899999999999998764321 111100 00000
Q ss_pred CcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceE---eccCC-----CCCCccceEEEeeCCCCCccEEEEEe-
Q 003886 247 DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ---AVKGI-----PKSLSVGQVVWAPLNEGLHQYLVFVG- 317 (789)
Q Consensus 247 ~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~---~l~~~-----~~~~~~~~~~wSPDg~~~~~~l~f~~- 317 (789)
. .-.....|... |. ......|++||+++++.. .+. . .....+..++|||||+ ++|..
T Consensus 206 ~----~~~~~~~yp~~-g~---~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~SpD~~-----~~~~~~ 271 (719)
T 1z68_A 206 Y----PRTINIPYPKA-GA---KNPVVRIFIIDTTYPAYVGPQEVP-VPAMIASSDYYFSWLTWVTDER-----VCLQWL 271 (719)
T ss_dssp S----CEEEEEECCBT-TS---CCCEEEEEEEESSCHHHHCCEECC-CCHHHHTSCEEEEEEEESSSSE-----EEEEEE
T ss_pred C----ccceeecCCCC-CC---CCCeeEEEEEECCCCCccceeEcc-CCccCCCCcceEEEeEEeCCCe-----EEEEEe
Confidence 0 00001112111 11 113358999999998752 441 1 1233567899999975 55553
Q ss_pred ecCCceeeeeeeeccCCcceEEEe----cccccchhhhhhhhcCCCCCCCeeecC-----CCCCccC-----cceecCCC
Q 003886 318 WSSETRKLGIKYCYNRPCALYAVR----VSLYKSEASELELKESSSEDLPVVNLT-----ESISSAF-----FPRFSPDG 383 (789)
Q Consensus 318 ~~~~~~~~g~~~~~~~~~~l~~~d----~~~~~~~~~~~~~~~~~~~~~~~~~Lt-----~~~~~~~-----~p~~SpDG 383 (789)
++.. ....|+++| + .+++.+.++ .+.+.+. .|.|||||
T Consensus 272 ~~~~-----------~~~~l~~~d~~~~~-----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 323 (719)
T 1z68_A 272 KRVQ-----------NVSVLSICDFREDW-----------------QTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA 323 (719)
T ss_dssp ESST-----------TEEEEEEEEECSSS-----------------SSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred cccc-----------CeEEEEEEcccCCC-----------------CCCceEEEEecccccCCceEccccCCccEECCCC
Confidence 2211 123699999 6 566666665 2334444 89999999
Q ss_pred CEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEE
Q 003886 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 463 (789)
Q Consensus 384 ~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (789)
+.|+|.+.... +..+|+++|+.++..+.++.+..++. .+.++ ||+.|+|.+.
T Consensus 324 ~~l~~~~~~~~-------g~~~l~~~~~~~~~~~~lt~~~~~v~--------------------~~~~~-d~~~i~~~~~ 375 (719)
T 1z68_A 324 ISYYKIFSDKD-------GYKHIHYIKDTVENAIQITSGKWEAI--------------------NIFRV-TQDSLFYSSN 375 (719)
T ss_dssp SCEEEEEECTT-------SCEEEEEESSCSTTCEECSCSSSCEE--------------------EEEEE-CSSEEEEEES
T ss_pred CeEEEEEEccC-------CceEEEEEECCCCceEecccCceEEE--------------------EEEEE-eCCEEEEEEe
Confidence 99998654431 35689999998876555554332211 23445 8999999987
Q ss_pred e----CCeEEEEEEECCCC--cEEEecCC----CCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeec
Q 003886 464 W----GSSQVIISVNVSSG--ELLRITPA----ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLN 533 (789)
Q Consensus 464 ~----~~~~~l~~~dl~tg--~~~~lt~~----~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~~~~~~~ 533 (789)
. .+..+||.+++.+| +.++++.. ...+....|++|++.+++.+++++.| .++++++.+++ ...
T Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p-~~~l~d~~~g~-~~~----- 448 (719)
T 1z68_A 376 EFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIP-ISTLHDGRTDQ-EIK----- 448 (719)
T ss_dssp CGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSC-EEEEECSSSCC-EEE-----
T ss_pred cCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCC-eEEEEECCCCC-EEE-----
Confidence 6 57789999998777 46777742 22344568999999999999999887 57788765442 111
Q ss_pred cCCCCCCCchhhhhccccCce-eeEeeecccccceeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-chhhH
Q 003886 534 VSSPISRCPEKVKSLLSSRQF-SIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYS 611 (789)
Q Consensus 534 ~~~~~~~~n~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~-~~~~~ 611 (789)
+...|+.+...++...+ +...+ .++..+ .+++++++.|+++++.+++|+||++||+++... ...|.
T Consensus 449 ----~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~l~~~~~~P~~~~~~~~~p~vl~~hG~~~~~~~~~~~~ 516 (719)
T 1z68_A 449 ----ILEENKELENALKNIQLPKEEIK-------KLEVDE-ITLWYKMILPPQFDRSKKYPLLIQVYGGPCSQSVRSVFA 516 (719)
T ss_dssp ----EEECCHHHHHHTTSBCCCEEEEE-------EEEETT-EEEEEEEEECTTCCSSSCEEEEEEECCCTTBCCCCCCCC
T ss_pred ----EeecchhhhhhhccccCCceEEE-------EEecCC-eEEEEEEEeCCCCCCCCCccEEEEECCCCCcCcccccch
Confidence 12345544334444433 22223 445556 899999999998767788999999999987643 22332
Q ss_pred -HHHHHH-HHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHH
Q 003886 612 -KSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLI 689 (789)
Q Consensus 612 -~~~~~l-a~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~ 689 (789)
.....| +++||.|+++|+||++++|..+.......++...++|+.++++++.+++.+|.+||+|+|||+||+++++++
T Consensus 517 ~~~~~~l~~~~G~~v~~~d~rG~g~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a 596 (719)
T 1z68_A 517 VNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQITAVRKFIEMGFIDEKRIAIWGWSYGGYVSSLAL 596 (719)
T ss_dssp CCHHHHHHHTTCCEEEEEECTTBSSSCHHHHGGGTTCTTHHHHHHHHHHHHHHHTTSCEEEEEEEEEEETHHHHHHHHHH
T ss_pred hhHHHHHHhcCCeEEEEEcCCCCCCCchhhHHHHhhccCcccHHHHHHHHHHHHhcCCCCCceEEEEEECHHHHHHHHHH
Confidence 233444 479999999999999998888877777778878899999999999998889999999999999999999999
Q ss_pred HhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCC-hhhHHHHHhcCccccCCCCCC-CEEEEEe
Q 003886 690 GQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS-VEDLTRFHSKSPISHISKVKT-PTIFLLG 767 (789)
Q Consensus 690 ~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~~~~~~i~~-P~Lii~G 767 (789)
.++|++|+++|+.+|+.++..+. ..+.+ .+++.+. .+..+.|...+|..++.++++ |+||+||
T Consensus 597 ~~~p~~~~~~v~~~~~~~~~~~~-------~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G 661 (719)
T 1z68_A 597 ASGTGLFKCGIAVAPVSSWEYYA-------SVYTE--------RFMGLPTKDDNLEHYKNSTVMARAEYFRNVDYLLIHG 661 (719)
T ss_dssp TTSSSCCSEEEEESCCCCTTTSB-------HHHHH--------HHHCCSSTTTTHHHHHHTCSGGGGGGGTTSEEEEEEE
T ss_pred HhCCCceEEEEEcCCccChHHhc-------cccch--------hhcCCcccccchhhhhhCCHhHHHhcCCCCcEEEEEe
Confidence 99999999999999998764321 11111 1112221 244566778889889999998 8999999
Q ss_pred CCCCCCChHHHHHHHHHCCC
Q 003886 768 AQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 768 ~~D~~vp~~~~~~l~~~l~~ 787 (789)
++|.+||++++.+++++|++
T Consensus 662 ~~D~~v~~~~~~~~~~~l~~ 681 (719)
T 1z68_A 662 TADDNVHFQNSAQIAKALVN 681 (719)
T ss_dssp TTCSSSCTHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999998753
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-46 Score=443.69 Aligned_cols=549 Identities=14% Similarity=0.112 Sum_probs=378.7
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeec-CCCCccceeecC-Cccee-cccEEEEeCCCCCeEEEEecCCC-
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISK-ENENSVTFQWAP-FPVEM-TGASAVVPSPSGSKLLVVRNPEN- 176 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~lt~~~-~~~~~-~~~~~~~~SPdG~~la~~~~~~~- 176 (789)
.+..+|||++++|..... ++....||+.+... ++++.++|.... +.... ..+..++|||||++|||..+.++
T Consensus 111 ~~~p~pdG~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~ 186 (741)
T 1yr2_A 111 FGLPQRRGASVFYSWNSG----LMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGS 186 (741)
T ss_dssp ECCCEEETTEEEEEEECS----SCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTC
T ss_pred cCCCEEECCEEEEEEEcC----CCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCC
Confidence 344459999999987643 23457889877531 033444443221 11000 14678999999999999987642
Q ss_pred CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCC
Q 003886 177 ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 255 (789)
Q Consensus 177 ~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (789)
+..++++++ .+|+..+....... +..++|||| +.|+|++.+.....
T Consensus 187 e~~~i~v~dl~tg~~~~~~~~~~~----------~~~~~wspD-~~l~~~~~~~~~~~---------------------- 233 (741)
T 1yr2_A 187 DWRTVKFVGVADGKPLADELKWVK----------FSGLAWLGN-DALLYSRFAEPKEG---------------------- 233 (741)
T ss_dssp SEEEEEEEETTTCCEEEEEEEEEE----------SCCCEESTT-SEEEEEECCCC-------------------------
T ss_pred ceEEEEEEECCCCCCCCccCCCce----------eccEEEECC-CEEEEEEecCcccc----------------------
Confidence 224677777 56655443211111 257999999 99999876542100
Q ss_pred cceeeCCcccccCCccCceEEEEEccCCce--EeccCCCC-CCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeecc
Q 003886 256 QGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYN 332 (789)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~--~~l~~~~~-~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~ 332 (789)
++.........|+++++.++.. +.+...+. ......+.|||||+. |+|.+.+...
T Consensus 234 --------~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~----l~~~~~~~~~---------- 291 (741)
T 1yr2_A 234 --------QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW----VVITSSEGTD---------- 291 (741)
T ss_dssp -------------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE----EEEEEECTTC----------
T ss_pred --------cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE----EEEEEEccCC----------
Confidence 0000011246799999988763 23311121 123568999999999 9998854311
Q ss_pred CCcceEEEecccccchhhhhhhhcCCCCCC--C-eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEe
Q 003886 333 RPCALYAVRVSLYKSEASELELKESSSEDL--P-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 409 (789)
Q Consensus 333 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~ 409 (789)
....||++|+ +++ + .+.|+........+ ++|||++|+|.++.+. ...+|+++
T Consensus 292 ~~~~l~~~d~-----------------~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~-------~~~~l~~~ 346 (741)
T 1yr2_A 292 PVNTVHVARV-----------------TNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGA-------PLKKIVRV 346 (741)
T ss_dssp SCCEEEEEEE-----------------ETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTC-------TTCEEEEE
T ss_pred CcceEEEEEC-----------------CCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCC-------CCCEEEEE
Confidence 2347999998 444 5 67777665545555 5699999999997641 34689999
Q ss_pred ecCCCC--CCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC-
Q 003886 410 DWPTNG--NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA- 486 (789)
Q Consensus 410 d~~~~~--~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~- 486 (789)
|+.++. .+.++..... .+..+.|+ ++.|+++...++...||.++++++..+.++..
T Consensus 347 d~~~~~~~~~~l~~~~~~-------------------~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~ 405 (741)
T 1yr2_A 347 DLSGSTPRFDTVVPESKD-------------------NLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPG 405 (741)
T ss_dssp ECSSSSCEEEEEECCCSS-------------------EEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSS
T ss_pred eCCCCccccEEEecCCCC-------------------eEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCC
Confidence 987642 1111111100 11233454 55798998999999999999876667777643
Q ss_pred CCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhhccccCceeeEeeecccccc
Q 003886 487 ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSA 566 (789)
Q Consensus 487 ~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~i~~~~~~~ 566 (789)
.+......++++++.++++++++.+|+.+|++++.+++ .++ +..+... +....+...++
T Consensus 406 ~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~--~~~----l~~~~~~--------~~~~~~~~~~~------- 464 (741)
T 1yr2_A 406 IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK--TTP----WEPVHLT--------FDPADFRVEQV------- 464 (741)
T ss_dssp SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE--EEE----CSCCCCS--------SCGGGEEEEEE-------
T ss_pred CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc--EEE----EecCCCC--------CChhHCEEEEE-------
Confidence 33334456778999999999999999999999986543 111 1111001 12222333343
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
.+++.||..++++++.|++. .++.|+||++|||++......|....+.|+++||+|+++|+||++++|..+.......
T Consensus 465 ~~~~~dg~~i~~~~~~p~~~--~~~~p~vl~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~g~~~~~~~~~~ 542 (741)
T 1yr2_A 465 FYPSKDGTKVPMFIVRRKDA--KGPLPTLLYGYGGFNVALTPWFSAGFMTWIDSGGAFALANLRGGGEYGDAWHDAGRRD 542 (741)
T ss_dssp EEECTTSCEEEEEEEEETTC--CSCCCEEEECCCCTTCCCCCCCCHHHHHHHTTTCEEEEECCTTSSTTHHHHHHTTSGG
T ss_pred EEEcCCCCEEEEEEEecCCC--CCCCcEEEEECCCCCccCCCCcCHHHHHHHHCCcEEEEEecCCCCCCCHHHHHhhhhh
Confidence 56677899999999999854 5689999999999887665667677778999999999999999999999887765555
Q ss_pred CCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhc
Q 003886 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 726 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~ 726 (789)
++...++|+.+++++|++++++|++||+|+|+|+||+++++++.++|++|+++|+.+|+.++..+........| ...+
T Consensus 543 ~~~~~~~D~~~~~~~l~~~~~~~~~ri~i~G~S~GG~la~~~~~~~p~~~~~~v~~~~~~d~~~~~~~~~~~~~--~~~~ 620 (741)
T 1yr2_A 543 KKQNVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLFAAASPAVGVMDMLRFDQFTAGRYW--VDDY 620 (741)
T ss_dssp GTHHHHHHHHHHHHHHHHTTSSCTTCEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTSGGGSTTGGGG--HHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCCChHHEEEEEECHHHHHHHHHHHhCchhheEEEecCCccccccccCCCCCchh--HHHc
Confidence 55667899999999999999899999999999999999999999999999999999999987654322111111 1111
Q ss_pred cCccccccCCCCChhhHHHHHhcCccccCCC-CCC-CEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 727 GSKGKDSFTESPSVEDLTRFHSKSPISHISK-VKT-PTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~-i~~-P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
+ .....+..+.+...+|+.++.+ +++ |+||+||++|.+||+.++.+++++|+.
T Consensus 621 g--------~~~~~~~~~~~~~~sp~~~~~~~~~~~P~Li~~G~~D~~v~~~~~~~~~~~l~~ 675 (741)
T 1yr2_A 621 G--------YPEKEADWRVLRRYSPYHNVRSGVDYPAILVTTADTDDRVVPGHSFKYTAALQT 675 (741)
T ss_dssp C--------CTTSHHHHHHHHTTCGGGCCCTTSCCCEEEEEECSCCSSSCTHHHHHHHHHHHH
T ss_pred C--------CCCCHHHHHHHHHcCchhhhhccCCCCCEEEEeeCCCCCCChhHHHHHHHHHhh
Confidence 1 1112355667788999999997 885 999999999999999999999998864
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-46 Score=444.37 Aligned_cols=553 Identities=16% Similarity=0.207 Sum_probs=375.2
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 180 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (789)
...+||| ++++|..+ ..++++++. +++.++++... ..+..++|||||++|||+.+. +
T Consensus 86 ~~~~spd-~~~~~~~~----------~~i~~~d~~--~~~~~~l~~~~-----~~~~~~~~SpdG~~la~~~~~-----~ 142 (706)
T 2z3z_A 86 RTLDAGR-GLVVLFTQ----------GGLVGFDML--ARKVTYLFDTN-----EETASLDFSPVGDRVAYVRNH-----N 142 (706)
T ss_dssp EEEETTT-TEEEEEET----------TEEEEEETT--TTEEEEEECCT-----TCCTTCEECTTSSEEEEEETT-----E
T ss_pred eEEECCC-CeEEEEEC----------CEEEEEECC--CCceEEccCCc-----ccccCCcCCCCCCEEEEEECC-----e
Confidence 3345799 78888742 478888763 33445554433 346778999999999998653 4
Q ss_pred EEEEe-cC-----CceeEEEecCCC-c-ccc-ccCCC--cccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcC
Q 003886 181 QFELW-SQ-----SQLEKEFHVPQT-V-HGS-VYADG--WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKD 249 (789)
Q Consensus 181 ~~~i~-~~-----~~~~~~~~~~~~-~-~g~-v~~d~--~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (789)
++..+ .+ ++..+++..... + .|. +|.++ ....++|||||++|+|.+.+..... .+.............
T Consensus 143 i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~-~~~~~~~~~~~~~~~ 221 (706)
T 2z3z_A 143 LYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVK-PTPIVDYHPLEAESK 221 (706)
T ss_dssp EEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSC-CEEEEECCSSSCEEE
T ss_pred EEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCc-eEEeeccCCCCCceE
Confidence 66665 45 555554433211 0 000 11111 1368999999999999985543211 111000000000000
Q ss_pred CCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCC-CCCCccceEEEeeCCCCCccEEEEEeecCCceeeeee
Q 003886 250 CNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK 328 (789)
Q Consensus 250 ~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~-~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~ 328 (789)
...|.. .|. ......|++||+++++.+.+... .....+..++|||||+. |++.+.....
T Consensus 222 ------~~~y~~-~g~---~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~----l~~~~~~~~~------ 281 (706)
T 2z3z_A 222 ------PLYYPM-AGT---PSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENI----LYVAEVNRAQ------ 281 (706)
T ss_dssp ------EECCCB-TTS---CCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSE----EEEEEECTTS------
T ss_pred ------EeeCCC-CCC---CCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCE----EEEEEeCCCC------
Confidence 000100 011 12346899999999988777311 22345678999999998 8887643211
Q ss_pred eeccCCcceEEEecccccchhhhhhhhcCCCCCC-CeeecCCC--CC---ccCcceecC--CCCEEEEEecCCCCCCCCc
Q 003886 329 YCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTES--IS---SAFFPRFSP--DGKFLVFLSAKSSVDSGAH 400 (789)
Q Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt~~--~~---~~~~p~~Sp--DG~~la~~s~~~~~~~g~~ 400 (789)
....|+++|+ .++ ..+.+... .. ....++||| ||+.| +.+.++
T Consensus 282 ----~~~~v~~~d~-----------------~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l-~~~~~~------- 332 (706)
T 2z3z_A 282 ----NECKVNAYDA-----------------ETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFI-WQSRRD------- 332 (706)
T ss_dssp ----CEEEEEEEET-----------------TTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEE-EEECTT-------
T ss_pred ----CeeEEEEEEC-----------------CCCceeeEEEEccCCCeECccCCceeecCCCCEEE-EEEccC-------
Confidence 2237999998 555 44444321 11 135789999 99855 555443
Q ss_pred cccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCC-CccccCCCEEEEEEEeCC--eEEEEEEECCC
Q 003886 401 SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS-NPWLSDGCTMLLSSIWGS--SQVIISVNVSS 477 (789)
Q Consensus 401 ~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~-~~ws~Dg~~l~~~~~~~~--~~~l~~~dl~t 477 (789)
+..+||.+|..++..+.++.+... +.. +.|+|||+.|++.+...+ ...||.+|+.+
T Consensus 333 -g~~~l~~~~~~~~~~~~l~~~~~~--------------------v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~ 391 (706)
T 2z3z_A 333 -GWNHLYLYDTTGRLIRQVTKGEWE--------------------VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG 391 (706)
T ss_dssp -SSCEEEEEETTSCEEEECCCSSSC--------------------EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC
T ss_pred -CccEEEEEECCCCEEEecCCCCeE--------------------EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC
Confidence 346788888655443334332211 112 479999999999887654 57899999999
Q ss_pred CcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhhccccCcee-e
Q 003886 478 GELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKSLLSSRQFS-I 556 (789)
Q Consensus 478 g~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~ 556 (789)
++.++++.... +....|++||+.+++.++++..|+.+++.++.+++ ..+ ++..++ +....+. .
T Consensus 392 ~~~~~l~~~~~-~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~--~~~--------~~~~~~-----~~~~~~~~~ 455 (706)
T 2z3z_A 392 GKTKDLTPESG-MHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS--HTL--------LEAKNP-----DTGYAMPEI 455 (706)
T ss_dssp CCCEESCCSSS-EEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE--EEE--------EECC-----------CCCCE
T ss_pred CCceeccCCCc-eEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe--Eee--------ccccch-----hhhcCCCCc
Confidence 99888885443 45578999999999999999999999999976542 111 111111 1111111 1
Q ss_pred EeeecccccceeecCCC-eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc-hhhHH----HHHHHHHCCcEEEEEcCC
Q 003886 557 MKIPVKGVSANLTKGAQ-KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSK----SLAFLSSVGYSLLIVNYR 630 (789)
Q Consensus 557 ~~i~~~~~~~~~~~~~g-~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~~----~~~~la~~Gy~V~~~d~r 630 (789)
..+ .+...+| ..++++++.|+++++.+++|+||++|||+++... ..|.. ..+.|+++||.|+++|+|
T Consensus 456 ~~~-------~~~~~~g~~~~~~~~~~P~~~~~~~~~p~iv~~HGg~~~~~~~~~~~~~~~~~~~~la~~G~~v~~~d~r 528 (706)
T 2z3z_A 456 RTG-------TIMAADGQTPLYYKLTMPLHFDPAKKYPVIVYVYGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSR 528 (706)
T ss_dssp EEE-------EEECTTSSSEEEEEEECCTTCCTTSCEEEEEECCCCTTCCCCCSCC----CCHHHHHHHTTCEEEEECCT
T ss_pred EEE-------EEEcCCCCEEEEEEEEeCCCCCCCCCccEEEEecCCCCceeeccccccCchHHHHHHHhCCcEEEEEecC
Confidence 111 4556688 8999999999987777889999999999886532 34543 577899999999999999
Q ss_pred CCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh
Q 003886 631 GSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (789)
Q Consensus 631 Gs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~ 710 (789)
|+++++..+.......++..+++|+.++++++.+++.+|.+|++|+|||+||+++++++.++|++|+++|+.+|+.++..
T Consensus 529 G~g~s~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 608 (706)
T 2z3z_A 529 GSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLMLTHGDVFKVGVAGGPVIDWNR 608 (706)
T ss_dssp TCSSSCHHHHHTTTTCTTHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCCCCGGG
T ss_pred CCcccchhHHHHHhhccCCccHHHHHHHHHHHHhCCCCCchheEEEEEChHHHHHHHHHHhCCCcEEEEEEcCCccchHH
Confidence 99888888877777788888899999999999988888999999999999999999999999999999999999987643
Q ss_pred hhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 711 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
+. ..+. +++++.+ .+..+.|...+|...+.++++|+|++||++|.+||++++.+++++|+
T Consensus 609 ~~-------~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~l~ 668 (706)
T 2z3z_A 609 YA-------IMYG--------ERYFDAP-QENPEGYDAANLLKRAGDLKGRLMLIHGAIDPVVVWQHSLLFLDACV 668 (706)
T ss_dssp SB-------HHHH--------HHHHCCT-TTCHHHHHHHCGGGGGGGCCSEEEEEEETTCSSSCTHHHHHHHHHHH
T ss_pred HH-------hhhh--------hhhcCCc-ccChhhhhhCCHhHhHHhCCCCEEEEeeCCCCCCCHHHHHHHHHHHH
Confidence 21 0111 1222222 24456677889999999999999999999999999999999999875
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=435.07 Aligned_cols=500 Identities=15% Similarity=0.148 Sum_probs=362.1
Q ss_pred cEEEEeCCCCCeEEEEecCCC-CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~-~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
+..++|||||++|||..+..+ +...+++++ .+|+..+.. ..... +..++|| ||+.|+|++.+.....
T Consensus 131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k---------~~~~~Ws-Dg~~l~y~~~~~~~~~ 199 (693)
T 3iuj_A 131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVK---------FSGISWL-GNEGFFYSSYDKPDGS 199 (693)
T ss_dssp EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEE---------SCCCEEE-TTTEEEEEESSCCC--
T ss_pred EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCce---------eccEEEe-CCCEEEEEEecCcccc
Confidence 567899999999999887653 235666666 566654432 11110 1678999 9999999987642100
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCce--EeccCCCC--CCccceEEEeeCCCCC
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPK--SLSVGQVVWAPLNEGL 309 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~--~~l~~~~~--~~~~~~~~wSPDg~~~ 309 (789)
+.........||++++.++.. +.+...+. +.....+.|||||+.
T Consensus 200 -------------------------------~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~- 247 (693)
T 3iuj_A 200 -------------------------------ELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRF- 247 (693)
T ss_dssp ------------------------------------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCE-
T ss_pred -------------------------------cccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCE-
Confidence 000001346799999987653 33321122 223457899999999
Q ss_pred ccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC--CeeecCCCCCccCcceecCCCCEEE
Q 003886 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVVNLTESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 310 ~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~Lt~~~~~~~~p~~SpDG~~la 387 (789)
|++.+.... ....||++|+ +++ +.++|+........+ |++||++|+
T Consensus 248 ---l~~~~~~~~-----------~~~~i~~~d~-----------------~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~ 295 (693)
T 3iuj_A 248 ---LLISAANST-----------SGNRLYVKDL-----------------SQENAPLLTVQGDLDADVSL-VDNKGSTLY 295 (693)
T ss_dssp ---EEEEEESSS-----------SCCEEEEEET-----------------TSTTCCCEEEECSSSSCEEE-EEEETTEEE
T ss_pred ---EEEEEccCC-----------CCcEEEEEEC-----------------CCCCCceEEEeCCCCceEEE-EeccCCEEE
Confidence 998874332 2248999998 333 677787765555555 899999999
Q ss_pred EEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCe
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 467 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 467 (789)
|.++++. ...+|+++|+.+++.... ..+++ .. + ... .|+++++.|++....++.
T Consensus 296 ~~t~~~~-------~~~~l~~~d~~~~~~~~~----~~l~~---~~--~--------~~~--~~s~~g~~lv~~~~~~g~ 349 (693)
T 3iuj_A 296 LLTNRDA-------PNRRLVTVDAANPGPAHW----RDLIP---ER--Q--------QVL--TVHSGSGYLFAEYMVDAT 349 (693)
T ss_dssp EEECTTC-------TTCEEEEEETTSCCGGGC----EEEEC---CC--S--------SCE--EEEEETTEEEEEEEETTE
T ss_pred EEECCCC-------CCCEEEEEeCCCCCcccc----EEEec---CC--C--------CEE--EEEEECCEEEEEEEECCe
Confidence 9998752 346899999987554211 11211 00 0 111 799999999999999999
Q ss_pred EEEEEEECCCCcEEEecCCC-CCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhh
Q 003886 468 QVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVK 546 (789)
Q Consensus 468 ~~l~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~ 546 (789)
..|+.++++++..+.+.... +......++++++.+++..+++++|+.+|.+++.+++ ...+ . ..+.
T Consensus 350 ~~l~~~d~~g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~-~~~l--~-------~~~~--- 416 (693)
T 3iuj_A 350 ARVEQFDYEGKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA-ISLY--R-------ASAA--- 416 (693)
T ss_dssp EEEEEECTTSCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC-EEEE--E-------CCCS---
T ss_pred eEEEEEECCCCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe-EEEE--E-------eCCC---
Confidence 99999999888888776443 2233334567899999999999999999999986543 1111 1 1111
Q ss_pred hccccCceeeEeeecccccceeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEE
Q 003886 547 SLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLI 626 (789)
Q Consensus 547 ~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~ 626 (789)
.+....+...++ .+++.||.+++++++.|++++..++.|+||++|||++......|....+.|+++||+|++
T Consensus 417 -~~~~~~~~~~~~-------~~~~~dg~~i~~~l~~p~~~~~~~~~P~ll~~hGg~~~~~~~~~~~~~~~l~~~G~~v~~ 488 (693)
T 3iuj_A 417 -PFKPEDYVSEQR-------FYQSKDGTRVPLIISYRKGLKLDGSNPTILYGYGGFDVSLTPSFSVSVANWLDLGGVYAV 488 (693)
T ss_dssp -SCCGGGEEEEEE-------EEECTTSCEEEEEEEEESSCCCSSCCCEEEECCCCTTCCCCCCCCHHHHHHHHTTCEEEE
T ss_pred -CcChhhCeeEEE-------EEecCCCcEEEEEEEecCCCCCCCCccEEEEECCCCCcCCCCccCHHHHHHHHCCCEEEE
Confidence 122222334444 566779999999999999776678899999999998876666777777899999999999
Q ss_pred EcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 627 VNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 627 ~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
+|+||++++|..+........+...++|+.+++++|++++++|++||+|+|+|+||+++++++.++|++|+++|+.+|+.
T Consensus 489 ~d~RG~g~~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~~~~~~~p~~~~a~v~~~~~~ 568 (693)
T 3iuj_A 489 ANLRGGGEYGQAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLMRVALPAVGVL 568 (693)
T ss_dssp ECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCC
T ss_pred EeCCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCcceEEEEEECHHHHHHHHHHhhCccceeEEEecCCcc
Confidence 99999999999998876666666778999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcCCCCCcchhhhhccCccccccCCCCChhh-HHHHHhcCccccCCC-CCCC-EEEEEeCCCCCCChHHHHHHHH
Q 003886 707 NLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED-LTRFHSKSPISHISK-VKTP-TIFLLGAQDLRVPVSNGLQVIY 783 (789)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~sp~~~~~~-i~~P-~Lii~G~~D~~vp~~~~~~l~~ 783 (789)
++..+........|. ..++ .....+. .+.+..+||+.++.+ +++| +||+||++|.+||+.++.++++
T Consensus 569 d~~~~~~~~~~~~~~--~~~g--------~p~~~~~~~~~~~~~sp~~~~~~~~~~Pp~Li~~G~~D~~v~~~~~~~~~~ 638 (693)
T 3iuj_A 569 DMLRYHTFTAGTGWA--YDYG--------TSADSEAMFDYLKGYSPLHNVRPGVSYPSTMVTTADHDDRVVPAHSFKFAA 638 (693)
T ss_dssp CTTTGGGSGGGGGCH--HHHC--------CTTSCHHHHHHHHHHCHHHHCCTTCCCCEEEEEEESSCSSSCTHHHHHHHH
T ss_pred hhhhhccCCCchhHH--HHcC--------CccCHHHHHHHHHhcCHHHhhcccCCCCceeEEecCCCCCCChhHHHHHHH
Confidence 876553211111111 1111 1112233 556778999999999 8998 9999999999999999999999
Q ss_pred HCCC
Q 003886 784 HIPF 787 (789)
Q Consensus 784 ~l~~ 787 (789)
+|+.
T Consensus 639 ~l~~ 642 (693)
T 3iuj_A 639 TLQA 642 (693)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9864
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-45 Score=430.97 Aligned_cols=559 Identities=14% Similarity=0.111 Sum_probs=379.9
Q ss_pred HHHHHHhhcCccccceEEEecCCCCCceEEEEEeechhhcccceeEEEEEEeec-CCC--C-ccceeecCCcc--eeccc
Q 003886 83 SKLLQDFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISK-ENE--N-SVTFQWAPFPV--EMTGA 156 (789)
Q Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~-~~~--~-~~~lt~~~~~~--~~~~~ 156 (789)
.+|+++++..-.... .+...++|.++.|.... .++....++..+... .++ . .+.+....+.. +....
T Consensus 104 ~~l~~e~~~~~~~~~---~~~p~~~g~~~yy~~~~----~g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~~~~ 176 (751)
T 2xe4_A 104 DDIYAEHISHINEDD---MSAPYVYGKYRYYTREV----KGKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAFCDV 176 (751)
T ss_dssp HHHHHHHHHTSCSSE---ECCCEEETTEEEEEEEC----TTCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSCCEE
T ss_pred HHHHHHHHHhccccc---CCCCeEECCEEEEEEEC----CCCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCeEEE
Confidence 456677765544333 22223689999897653 223344566654310 222 2 22222111100 00135
Q ss_pred EEEEeC-CCCCeEEEEecCCC-CCCeEEEEe-cCC-ceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 157 SAVVPS-PSGSKLLVVRNPEN-ESPIQFELW-SQS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 157 ~~~~~S-PdG~~la~~~~~~~-~~~~~~~i~-~~~-~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
..++|| |||++|||+.+..+ +..++++++ .++ +.. ..... ..+.+++|||||+.|+|++.+...
T Consensus 177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l-----~~~~~------~~~~~~~WspDg~~l~y~~~d~~~- 244 (751)
T 2xe4_A 177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI-----ADKVS------GTNGEIVWGPDHTSLFYVTKDETL- 244 (751)
T ss_dssp EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC-----CCCEE------EECSCCEECSSTTEEEEEEECTTC-
T ss_pred eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC-----Ccccc------CceeeEEEecCCCEEEEEEECCCC-
Confidence 689999 99999999987653 234588877 455 411 11110 012689999999999999764310
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCce--EeccCCCCCCccceEEEeeCCCCCc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~--~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
...+||++++.++.. +.+...+.......+.|||||+.
T Consensus 245 --------------------------------------~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~-- 284 (751)
T 2xe4_A 245 --------------------------------------RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNT-- 284 (751)
T ss_dssp --------------------------------------CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSE--
T ss_pred --------------------------------------CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCE--
Confidence 125899999988753 22311122223457899999999
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC--Ce--eecCCCCCccCcceecCC---C
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PV--VNLTESISSAFFPRFSPD---G 383 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~--~~Lt~~~~~~~~p~~SpD---G 383 (789)
|+|.++.. ....||++|+ +++ +. +.|+... ..+.|||| |
T Consensus 285 --l~~~~~~~------------~~~~l~~~d~-----------------~~~~~~~~~~~l~~~~---~~~~~s~~~~~g 330 (751)
T 2xe4_A 285 --LCIGSQSP------------ETAEVHLLDL-----------------RKGNAHNTLEIVRPRE---KGVRYDVQMHGT 330 (751)
T ss_dssp --EEEEEECS------------SCEEEEEEES-----------------SSCTTCCCEEESSCCC---TTCCEEEEEETT
T ss_pred --EEEEecCC------------CCceEEEEEC-----------------CCCCCCceeEEeecCC---CCceEEEeeeeC
Confidence 99988533 2347999998 332 45 6676543 35667777 9
Q ss_pred CEEEEEecCCCCCCCCccccceeEEeecCCC-CCCC-cccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEE
Q 003886 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTN-GNFS-SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 461 (789)
Q Consensus 384 ~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~-~~~~-~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~ 461 (789)
+.|+|.++++. ....+|+++|+.+. ..+. +.....++ .+. .|+.+++.|++.
T Consensus 331 ~~l~~~t~~~~------a~~~~L~~~d~~~~~~~~~~li~~~~~~------------------~l~--~~~~~~~~lv~~ 384 (751)
T 2xe4_A 331 SHLVILTNEGG------AVNHKLLIAPRGQPSDWSHVLVDHSEDV------------------FME--SIAVRSNYLVVA 384 (751)
T ss_dssp TEEEEEECTTT------CTTCEEEEEETTSTTCCCCEEECCCSSE------------------EEE--EEEECSSEEEEE
T ss_pred CEEEEEeCCCC------CCCcEEEEEcCCCcccceeeEECCCCCc------------------EEE--EEEEECCEEEEE
Confidence 99999998750 13568999998752 3222 21111110 011 245567789999
Q ss_pred EEeCCeEEEEEEEC-------CCCc-EEEecCCCCCceeEEe------eecCCEEEEEEeCCCCCCeEEEEeecccCCCc
Q 003886 462 SIWGSSQVIISVNV-------SSGE-LLRITPAESNFSWSLL------TLDGDNIIAVSSSPVDVPQVKYGYFVDKANKG 527 (789)
Q Consensus 462 ~~~~~~~~l~~~dl-------~tg~-~~~lt~~~~~~~~~~~------s~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~ 527 (789)
...++...|+.+++ ++|+ .++|+.....+ ...+ +.+++.++++++++++|+.+|.+++.+++ ..
T Consensus 385 ~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~-~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~-~~ 462 (751)
T 2xe4_A 385 GRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIF-TVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS-RT 462 (751)
T ss_dssp EEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSC-EEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC-EE
T ss_pred EEeCCEEEEEEEecccccccccCCccceEECCCCcee-EEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc-EE
Confidence 99999999999996 6777 78885443222 2234 45788999999999999999999986543 11
Q ss_pred eeeeeccCCCCCCCchhhhhccccCceeeEeeecccccceeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc
Q 003886 528 TWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL 607 (789)
Q Consensus 528 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~ 607 (789)
.+ ... +.. ..+....+....+ .+++.||..++++++.|++++..+++|+||++|||++....
T Consensus 463 ~l--~~~--~~~-------~~~~~~~~~~~~~-------~~~s~dG~~i~~~l~~p~~~~~~~~~P~vl~~HGg~~~~~~ 524 (751)
T 2xe4_A 463 AV--KVR--EVG-------GGFDAANYKVERR-------FATAPDQTKIPLSVVYHKDLDMSQPQPCMLYGYGSYGLSMD 524 (751)
T ss_dssp EE--EEC--CCC-------TTCCGGGEEEEEE-------EEECTTCCEEEEEEEEETTSCTTSCCCEEEECCCCTTCCCC
T ss_pred EE--ecc--ccc-------cCCCccceEEEEE-------EEECCCCcEEEEEEEcCCCCCCCCCccEEEEECCCCCcCCC
Confidence 11 111 000 0122222333333 56777999999999999877667789999999999887655
Q ss_pred hhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhc-cCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHH
Q 003886 608 SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ-SLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT 686 (789)
Q Consensus 608 ~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~-~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~ 686 (789)
..|....+.|+++||+|+++|+||++++|..+.. .....++...++|+.+++++|++++++|++||+|+|+|+||++++
T Consensus 525 ~~~~~~~~~l~~~G~~v~~~d~RG~g~~G~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~la~ 604 (751)
T 2xe4_A 525 PQFSIQHLPYCDRGMIFAIAHIRGGSELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPSQLACEGRSAGGLLMG 604 (751)
T ss_dssp CCCCGGGHHHHTTTCEEEEECCTTSCTTCTHHHHTTSSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHH
T ss_pred CcchHHHHHHHhCCcEEEEEeeCCCCCcCcchhhccccccccCccHHHHHHHHHHHHHCCCCCcccEEEEEECHHHHHHH
Confidence 5666667789999999999999999999999887 655566667899999999999999989999999999999999999
Q ss_pred HHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCC-EEEE
Q 003886 687 HLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTP-TIFL 765 (789)
Q Consensus 687 ~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P-~Lii 765 (789)
+++.++|++|+|+|+.+|+.++..++.....+.+. ..+ ..+......+..+.+...||+.++.++++| +||+
T Consensus 605 ~~a~~~p~~~~a~v~~~~~~d~~~~~~~~~~~~~~--~~~-----~~~g~p~~~~~~~~~~~~sp~~~~~~~~~Pp~Lii 677 (751)
T 2xe4_A 605 AVLNMRPDLFKVALAGVPFVDVMTTMCDPSIPLTT--GEW-----EEWGNPNEYKYYDYMLSYSPMDNVRAQEYPNIMVQ 677 (751)
T ss_dssp HHHHHCGGGCSEEEEESCCCCHHHHHTCTTSTTHH--HHT-----TTTCCTTSHHHHHHHHHHCTGGGCCSSCCCEEEEE
T ss_pred HHHHhCchheeEEEEeCCcchHHhhhcccCcccch--hhH-----HHcCCCCCHHHHHHHHhcChhhhhccCCCCceeEE
Confidence 99999999999999999999987765433332211 011 111111122344567788999999999997 9999
Q ss_pred EeCCCCCCChHHHHHHHHHCCC
Q 003886 766 LGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 766 ~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
||++|.+||+.++.+++++|++
T Consensus 678 ~G~~D~~vp~~~~~~~~~~L~~ 699 (751)
T 2xe4_A 678 CGLHDPRVAYWEPAKWVSKLRE 699 (751)
T ss_dssp EETTCSSSCTHHHHHHHHHHHH
T ss_pred eeCCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999998863
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=343.72 Aligned_cols=307 Identities=15% Similarity=0.183 Sum_probs=241.2
Q ss_pred CCCccccCCCEEEEEEEeCCeEEEEEEECCCCc--EEE-ecCC-CCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 447 LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE--LLR-ITPA-ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 447 ~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~--~~~-lt~~-~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
..+.|..| .|+++...++...|+++++.+|+ .+. +... .+.+.....+++++.+++..+++.+|+.+|.+++.
T Consensus 353 ~~~~~~~~--~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~- 429 (711)
T 4hvt_A 353 NFISTTKD--RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT- 429 (711)
T ss_dssp EEEEECSS--CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-
T ss_pred EEEEEECC--EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-
Confidence 35567655 58888888999999999987774 444 4332 23344445567888999999999999999999976
Q ss_pred cCCCceeeeeccCCCCCCCchhhhhccccCceeeEeeecccccceeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCC
Q 003886 523 KANKGTWSWLNVSSPISRCPEKVKSLLSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP 602 (789)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~ 602 (789)
++ ...+ ...+. .+....+...++ .+++.||.+++++++.|++.+..+++|+||++|||+
T Consensus 430 ~~-~~~l---------~~~~~----~~~~~~~~~e~v-------~~~s~DG~~i~~~l~~P~~~~~~~~~P~vl~~HGG~ 488 (711)
T 4hvt_A 430 HE-LKII---------RKALY----SFDSENYVLEQK-------EATSFDGVKIPYFLVYKKGIKFDGKNPTLLEAYGGF 488 (711)
T ss_dssp SC-EEEE---------ECCSS----CCCGGGEEEEEE-------EEECTTSCEEEEEEEEETTCCCSSCCCEEEECCCCT
T ss_pred Cc-EEEE---------ecCCc----ccCcccCeeEEE-------EEECCCCeEEEEEEEecCCCCCCCCccEEEEECCCC
Confidence 32 1111 11121 122233344444 567789999999999999876778999999999999
Q ss_pred CCCCchhhHHHH-HHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCcc
Q 003886 603 HSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHG 681 (789)
Q Consensus 603 ~~~~~~~~~~~~-~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~G 681 (789)
+......|.... +.|+++||+|+++|+||++|+|..+.......++...++|+.+++++|++++.+|++||+|+|+|+|
T Consensus 489 ~~~~~~~~~~~~~q~la~~Gy~Vv~~d~RGsg~~G~~~~~~~~~~~~~~~~~D~~aav~~L~~~~~~d~~rI~i~G~S~G 568 (711)
T 4hvt_A 489 QVINAPYFSRIKNEVWVKNAGVSVLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAVSEELIKQNITSPEYLGIKGGSNG 568 (711)
T ss_dssp TCCCCCCCCHHHHHHTGGGTCEEEEECCTTSSTTCHHHHHTTSGGGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHH
T ss_pred CCCCCCcccHHHHHHHHHCCCEEEEEeCCCCCCcchhHHHhhhhccCcCcHHHHHHHHHHHHHcCCCCcccEEEEeECHH
Confidence 877666666555 5899999999999999999999999888887888888999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCC-
Q 003886 682 GFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKT- 760 (789)
Q Consensus 682 G~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~- 760 (789)
|+++++++.++|++|+|+|+.+|+.++..+........|. ..++ .....+..+.+..+||+.++.++++
T Consensus 569 G~la~~~a~~~pd~f~a~V~~~pv~D~~~~~~~~~~~~~~--~~~G--------~p~~~~~~~~l~~~SP~~~v~~i~~~ 638 (711)
T 4hvt_A 569 GLLVSVAMTQRPELFGAVACEVPILDMIRYKEFGAGHSWV--TEYG--------DPEIPNDLLHIKKYAPLENLSLTQKY 638 (711)
T ss_dssp HHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGH--HHHC--------CTTSHHHHHHHHHHCGGGSCCTTSCC
T ss_pred HHHHHHHHHhCcCceEEEEEeCCccchhhhhccccchHHH--HHhC--------CCcCHHHHHHHHHcCHHHHHhhcCCC
Confidence 9999999999999999999999999986654332222221 1122 1222345677889999999999987
Q ss_pred -CEEEEEeCCCCCCChHHHHHHHHHC-CC
Q 003886 761 -PTIFLLGAQDLRVPVSNGLQVIYHI-PF 787 (789)
Q Consensus 761 -P~Lii~G~~D~~vp~~~~~~l~~~l-~~ 787 (789)
|+||+||++|.+||+.++.+++++| +.
T Consensus 639 pPvLii~G~~D~~Vp~~~s~~~~~aL~~~ 667 (711)
T 4hvt_A 639 PTVLITDSVLDQRVHPWHGRIFEYVLAQN 667 (711)
T ss_dssp CEEEEEEETTCCSSCTHHHHHHHHHHTTC
T ss_pred CCEEEEecCCCCcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999 64
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-22 Score=221.69 Aligned_cols=267 Identities=16% Similarity=0.190 Sum_probs=197.2
Q ss_pred CCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe
Q 003886 106 GNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW 185 (789)
Q Consensus 106 pdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~ 185 (789)
+.+.+++|..... .+...+.|++++++ +...+.++... ..+..++|||||++|||++..+ +...++..+
T Consensus 141 ~~~~~l~~~s~~~---~~~~~~~i~i~d~~--g~~~~~l~~~~-----~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d 209 (415)
T 2hqs_A 141 AFRTRIAYVVQTN---GGQFPYELRVSDYD--GYNQFVVHRSP-----QPLMSPAWSPDGSKLAYVTFES-GRSALVIQT 209 (415)
T ss_dssp CTTCEEEEEEECS---SSSCCEEEEEEETT--SCSCEEEEEES-----SCEEEEEECTTSSEEEEEECTT-SSCEEEEEE
T ss_pred cCCCEEEEEEecC---CCCccceEEEEcCC--CCCCEEEeCCC-----CcceeeEEcCCCCEEEEEEecC-CCcEEEEEE
Confidence 4567888876542 12223789998873 44556666544 4588999999999999998654 344566555
Q ss_pred -cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcc
Q 003886 186 -SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWG 264 (789)
Q Consensus 186 -~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g 264 (789)
.+++..++......+ ..++|||||++|+|+....
T Consensus 210 ~~tg~~~~l~~~~~~~----------~~~~~spdg~~la~~~~~~----------------------------------- 244 (415)
T 2hqs_A 210 LANGAVRQVASFPRHN----------GAPAFSPDGSKLAFALSKT----------------------------------- 244 (415)
T ss_dssp TTTCCEEEEECCSSCE----------EEEEECTTSSEEEEEECTT-----------------------------------
T ss_pred CCCCcEEEeecCCCcc----------cCEEEcCCCCEEEEEEecC-----------------------------------
Confidence 456665554433222 7899999999999976532
Q ss_pred cccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEeccc
Q 003886 265 ETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 344 (789)
Q Consensus 265 ~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 344 (789)
+...|++||+.+++.+.+ ......+..+.|||||+. |+|.+.+. ....||++|+
T Consensus 245 ------g~~~i~~~d~~~~~~~~l--~~~~~~~~~~~~spdg~~----l~~~s~~~------------g~~~i~~~d~-- 298 (415)
T 2hqs_A 245 ------GSLNLYVMDLASGQIRQV--TDGRSNNTEPTWFPDSQN----LAFTSDQA------------GRPQVYKVNI-- 298 (415)
T ss_dssp ------SSCEEEEEETTTCCEEEC--CCCSSCEEEEEECTTSSE----EEEEECTT------------SSCEEEEEET--
T ss_pred ------CCceEEEEECCCCCEEeC--cCCCCcccceEECCCCCE----EEEEECCC------------CCcEEEEEEC--
Confidence 346899999999998888 444556778999999999 99988432 1237999998
Q ss_pred ccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCccccee
Q 003886 345 YKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 424 (789)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~ 424 (789)
.+++.++++.+......++|||||++|++.+... +...|++||+.+++.+.++...
T Consensus 299 ---------------~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~--------g~~~i~~~d~~~~~~~~l~~~~- 354 (415)
T 2hqs_A 299 ---------------NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG--------GQQHIAKQDLATGGVQVLSSTF- 354 (415)
T ss_dssp ---------------TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECS--------SCEEEEEEETTTCCEEECCCSS-
T ss_pred ---------------CCCCEEEEecCCCcccCeEECCCCCEEEEEECcC--------CceEEEEEECCCCCEEEecCCC-
Confidence 6777778877766778899999999999988653 2457999999886654332211
Q ss_pred eEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeec
Q 003886 425 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLD 498 (789)
Q Consensus 425 ~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~d 498 (789)
.+..+.|+|||+.|++.+...+...||.+|++++..++++...+.+..+.|+|.
T Consensus 355 --------------------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 355 --------------------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp --------------------SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred --------------------CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCccccc
Confidence 133568999999999998888888999999998888898877666666677764
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-23 Score=225.29 Aligned_cols=321 Identities=14% Similarity=0.144 Sum_probs=210.2
Q ss_pred ecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003886 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (789)
Q Consensus 102 ~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (789)
+.+||||++|+|.... ....+||++++ .+++.++++.... .....+.|||||++|+|++... .+
T Consensus 41 ~~~SpDg~~l~~~~~~------~g~~~l~~~d~--~~g~~~~lt~~~~----~~~~~~~~spdg~~l~~~~~~~----~l 104 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAF------DGPWNYYLLDL--NTQVATQLTEGRG----DNTFGGFLSPDDDALFYVKDGR----NL 104 (388)
T ss_dssp CCBCTTSCEEEEEECT------TSSCEEEEEET--TTCEEEECCCSSC----BCSSSCEECTTSSEEEEEETTT----EE
T ss_pred ccCCCCCCEEEEEEcC------CCCceEEEEeC--CCCceEEeeeCCC----CCccceEEcCCCCEEEEEeCCC----eE
Confidence 6789999999998642 13457999876 4456667765441 1233678999999999998643 57
Q ss_pred EEEe-cCCceeEEEecCCCccccccCCCcccce--eecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcce
Q 003886 182 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGI--SWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 258 (789)
Q Consensus 182 ~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~--~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (789)
+.++ .+++.+.++..+... .... .++|||+.|+..........+. ..|. .
T Consensus 105 ~~~d~~~g~~~~~~~~~~~~---------~~~~~~~~~~dg~~l~~~~~~~~~~~~~---------------~~~~---~ 157 (388)
T 3pe7_A 105 MRVDLATLEENVVYQVPAEW---------VGYGTWVANSDCTKLVGIEIRREDWVPL---------------TDWK---K 157 (388)
T ss_dssp EEEETTTCCEEEEEECCTTE---------EEEEEEEECTTSSEEEEEEEEGGGCCCC---------------CSHH---H
T ss_pred EEEECCCCcceeeeechhhc---------ccccceeECCCCCeeccccccCcccccc---------------cccc---h
Confidence 7777 566766666654332 1223 3499999998764332110000 0000 0
Q ss_pred eeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEee-CCCCCccEEEEEeecCCceeeeeeeeccCCcce
Q 003886 259 WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP-LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 337 (789)
Q Consensus 259 ~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP-Dg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l 337 (789)
| .+.+.......|+++|+++|+.+.+ +.....+..+.||| ||+. |+|++.... ......|
T Consensus 158 ~----~~~~~~~~~~~l~~~d~~~g~~~~l--~~~~~~~~~~~~sp~dg~~----l~~~~~~~~---------~~~~~~l 218 (388)
T 3pe7_A 158 F----HEFYFTKPCCRLMRVDLKTGESTVI--LQENQWLGHPIYRPYDDST----VAFCHEGPH---------DLVDARM 218 (388)
T ss_dssp H----HHHGGGCCCEEEEEEETTTCCEEEE--EEESSCEEEEEEETTEEEE----EEEEECSCT---------TTSSCSE
T ss_pred h----hhhhccCCcceEEEEECCCCceEEe--ecCCccccccEECCCCCCE----EEEEEecCC---------CCCcceE
Confidence 0 0011122447899999999999888 44445567899999 9999 999885321 0124489
Q ss_pred EEEecccccchhhhhhhhcCCCCCCCeeecCCCCC--ccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCC
Q 003886 338 YAVRVSLYKSEASELELKESSSEDLPVVNLTESIS--SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 338 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~--~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
|.+|+ +++..+.|+.... .+..|+|||||++|+|.+.... .....|+++|+.+++
T Consensus 219 ~~~d~-----------------~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~------~~~~~l~~~d~~~g~ 275 (388)
T 3pe7_A 219 WLINE-----------------DGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKG------SPDRFIYSADPETLE 275 (388)
T ss_dssp EEEET-----------------TSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETT------CCCEEEEEECTTTCC
T ss_pred EEEeC-----------------CCCceEEeeeCCCCcccccceECCCCCEEEEEecCCC------CCcceEEEEecCCCc
Confidence 99998 6777888877652 4678999999999999987641 112359999998876
Q ss_pred CCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe------CCeEEEEEEECCCCcEEEecCCCC-
Q 003886 416 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW------GSSQVIISVNVSSGELLRITPAES- 488 (789)
Q Consensus 416 ~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~------~~~~~l~~~dl~tg~~~~lt~~~~- 488 (789)
.+.++.... ... +........|+|||+.|++.... .+...||.+|+.+|+.++++....
T Consensus 276 ~~~l~~~~~-~~~-------------~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~ 341 (388)
T 3pe7_A 276 NRQLTSMPA-CSH-------------LMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTS 341 (388)
T ss_dssp EEEEEEECC-EEE-------------EEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCC
T ss_pred eEEEEcCCC-cee-------------eeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCc
Confidence 543322111 000 00112345799999999987654 566789999999999999886654
Q ss_pred ----------CceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 489 ----------NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 489 ----------~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
......|++||+.|++..... ..+.||++++..
T Consensus 342 ~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~-g~~~l~~~~l~~ 384 (388)
T 3pe7_A 342 WKVFEGDRQVTHPHPSFTPDDKQILFTSDVH-GKPALYLATLPE 384 (388)
T ss_dssp CCCBTTBSSTTCCCCEECTTSSEEEEEECTT-SSCEEEEEECCG
T ss_pred ccccccccccCCCCccCCCCCCEEEEEecCC-CceeEEEEECCh
Confidence 234568999999998887654 456799988764
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-21 Score=208.17 Aligned_cols=317 Identities=13% Similarity=0.126 Sum_probs=199.3
Q ss_pred HhhcCccccceEEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCe
Q 003886 88 DFTNISSIDKAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSK 167 (789)
Q Consensus 88 ~~~~~~~~~~~~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~ 167 (789)
++.+.+.+....+ ||++++|+....+...+.....||++++. +++.+++ ..+..|+|||||++
T Consensus 10 ~l~~~~~~~~~~~------dG~~i~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~l---------~~~~~~~~SpDg~~ 72 (347)
T 2gop_A 10 TFAKFAYLSDPRT------KGELVAYVLTKANLKDNKYENTIVIENLK--NNARRFI---------ENATMPRISPDGKK 72 (347)
T ss_dssp CCCCSCEEEEEEE------ETTEEEEEEEEEETTTTEEEEEEEEEETT--TCCEEEE---------ESCEEEEECTTSSE
T ss_pred cceeeEEcccceE------CCcEEEEEEeecCcccCCccceEEEEeCC--CCceEEc---------ccCCCeEECCCCCE
Confidence 4445555444433 99999999877665556668899998863 3344444 24778999999999
Q ss_pred EEEEecCC-CCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCC
Q 003886 168 LLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGS 245 (789)
Q Consensus 168 la~~~~~~-~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~ 245 (789)
|||++..+ ++..++|.+. .+++.++++.... + ..+.|||||++|+|.+.+..... ..
T Consensus 73 la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~----------~~~~wspdg~~l~~~~~~~~~~~----------~~ 131 (347)
T 2gop_A 73 IAFMRANEEKKVSEIWVADLETLSSKKILEAKN-I----------RSLEWNEDSRKLLIVGFKRREDE----------DF 131 (347)
T ss_dssp EEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-E----------EEEEECTTSSEEEEEEECCCC--------------
T ss_pred EEEEEeccCCCcceEEEEECCCCceEEEEcCCC-c----------cceeECCCCCEEEEEEccCCCcC----------Cc
Confidence 99998654 2445688777 5677777776543 3 78999999999999986421100 00
Q ss_pred CCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCce-EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCcee
Q 003886 246 SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK 324 (789)
Q Consensus 246 ~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~-~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~ 324 (789)
.......|..+ |..+......+|+++|+.+|+. +.++ . . .+..+.||||| . + |++.......
T Consensus 132 ------~~~~~~~~~~~-g~~~~~~~~~~l~~~d~~~~~~~~~l~--~-~-~~~~~~~spdg-~----~-~~~~~~~~~~ 194 (347)
T 2gop_A 132 ------IFEDDVPAWFD-DLGFFDGEKTTFWIFDTESEEVIEEFE--K-P-RFSSGIWHRDK-I----V-VNVPHREIIP 194 (347)
T ss_dssp -----------CCCC----------CEEEEEEEETTTTEEEEEEE--E-E-TTCEEEEETTE-E----E-EEEECCCSSC
T ss_pred ------EEEcccceeec-CcccccCccceEEEEECCCCeEEeeec--C-C-CcccccCCCCe-E----E-EEEecccccc
Confidence 00001111112 2222223457899999999988 7774 3 3 77899999998 5 4 4443221100
Q ss_pred eeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccc
Q 003886 325 LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 404 (789)
Q Consensus 325 ~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~ 404 (789)
+......||.+| . ++.+.|+.+ .....+ ||||++|+|.+..... ......
T Consensus 195 -----~~~~~~~l~~~d-~------------------~~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~---~~~~~~ 244 (347)
T 2gop_A 195 -----QYFKFWDIYIWE-D------------------GKEEKMFEK-VSFYAV--DSDGERILLYGKPEKK---YMSEHN 244 (347)
T ss_dssp -----CSSCCEEEEEEE-T------------------TEEEEEEEE-ESEEEE--EECSSCEEEEECCSSS---CCCSSC
T ss_pred -----cccccccEEEeC-C------------------CceEEeccC-cceeeE--CCCCCEEEEEEccccC---Cccccc
Confidence 000134688887 2 345566654 433333 9999999999866421 111245
Q ss_pred eeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCC-CccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003886 405 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS-NPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (789)
Q Consensus 405 ~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~-~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~l 483 (789)
+|+++| +++.+.++..... .+.. +.|+ || +++.+..++...|| ++ +|+.+++
T Consensus 245 ~l~~~d--~~~~~~l~~~~~~-------------------~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~--~g~~~~~ 297 (347)
T 2gop_A 245 KLYIYD--GKEVMGILDEVDR-------------------GVGQAKIKD-GK--VYFTLFEEGSVNLY-IW--DGEIKPI 297 (347)
T ss_dssp EEEEEC--SSCEEESSTTCCS-------------------EEEEEEEET-TE--EEEEEEETTEEEEE-EE--SSSEEEE
T ss_pred eEEEEC--CCceEeccccCCc-------------------ccCCccEEc-Cc--EEEEEecCCcEEEE-Ec--CCceEEE
Confidence 799998 4444333332111 1122 5798 87 88888888899999 99 5777777
Q ss_pred cCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEe
Q 003886 484 TPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 519 (789)
Q Consensus 484 t~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~ 519 (789)
+...+.+....+++ .++++.++...|++||.++
T Consensus 298 ~~~~~~v~~~~~s~---~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 298 AKGRHWIMGFDVDE---IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp ECSSSEEEEEEESS---SEEEEEECSSSCCEEEEES
T ss_pred ecCCCeEEeeeeeC---cEEEEEcCCCChHHheEeC
Confidence 76544333334444 6888999999999999987
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-20 Score=221.65 Aligned_cols=313 Identities=12% Similarity=0.089 Sum_probs=194.2
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCcccee-ecCCcceecccEEEEeCCCCCeEEEEecCCC---
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQ-WAPFPVEMTGASAVVPSPSGSKLLVVRNPEN--- 176 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt-~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~--- 176 (789)
...++|||+.++.. .+.|+++++.++ +..++. ...+.........++|||||++|||..+...
T Consensus 21 ~~~w~~dg~~~~~~-----------~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r 87 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ-----------ENNILVFNAEYG--NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR 87 (740)
T ss_dssp CEEECSSSEEEEEE-----------TTEEEEEETTTC--CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred ccEECCCCcEEEEc-----------CCcEEEEECCCC--ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEE
Confidence 45678999766432 136778776433 323332 2221110011234899999999999886421
Q ss_pred --CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCC
Q 003886 177 --ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSW 253 (789)
Q Consensus 177 --~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (789)
....++..+ .+++..+++..... ...++|||||++|||+.
T Consensus 88 ~~~~~~~~~~d~~~~~~~~l~~~~~~----------~~~~~~SPdG~~la~~~--------------------------- 130 (740)
T 4a5s_A 88 HSYTASYDIYDLNKRQLITEERIPNN----------TQWVTWSPVGHKLAYVW--------------------------- 130 (740)
T ss_dssp SCEEEEEEEEETTTTEECCSSCCCTT----------EEEEEECSSTTCEEEEE---------------------------
T ss_pred EccceEEEEEECCCCcEEEcccCCCc----------ceeeEECCCCCEEEEEE---------------------------
Confidence 113455555 45554443322222 27899999999999973
Q ss_pred CCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCC------------------ccceEEEeeCCCCCccEEEE
Q 003886 254 KGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL------------------SVGQVVWAPLNEGLHQYLVF 315 (789)
Q Consensus 254 ~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~------------------~~~~~~wSPDg~~~~~~l~f 315 (789)
+..||++|+.+|+.++++ ..+.. ....+.|||||+. |+|
T Consensus 131 ------------------~~~i~~~~~~~~~~~~lt-~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~----la~ 187 (740)
T 4a5s_A 131 ------------------NNDIYVKIEPNLPSYRIT-WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTF----LAY 187 (740)
T ss_dssp ------------------TTEEEEESSTTSCCEECC-SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSE----EEE
T ss_pred ------------------CCeEEEEECCCCceEEEc-CCCCccceecCcccccccchhcCCCcceEECCCCCE----EEE
Confidence 257999999999988884 22211 1124899999999 999
Q ss_pred EeecCCc-eeee----------------eeee----ccCCcceEEEecccccchhhhhhhhcCCCCC---C---CeeecC
Q 003886 316 VGWSSET-RKLG----------------IKYC----YNRPCALYAVRVSLYKSEASELELKESSSED---L---PVVNLT 368 (789)
Q Consensus 316 ~~~~~~~-~~~g----------------~~~~----~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~---~---~~~~Lt 368 (789)
.+.+... +... +.|. .+....|+++|+ ++ + ..++|+
T Consensus 188 ~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~-----------------~~~~~~~~~~~~~l~ 250 (740)
T 4a5s_A 188 AQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNT-----------------DSLSSVTNATSIQIT 250 (740)
T ss_dssp EEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEET-----------------TSCCSSSCCCEEEEC
T ss_pred EEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEEC-----------------CCCCCCCcceEEEec
Confidence 8754331 1100 0010 012236888998 55 5 556665
Q ss_pred C------CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCC----CCCcccceeeEEeeeeccCCCCC
Q 003886 369 E------SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG----NFSSLEKIVDVIPVVQCAEGDCF 438 (789)
Q Consensus 369 ~------~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~----~~~~t~~~~~v~~~~~~~~~~~f 438 (789)
. +......++|||||+.+++..++.. ....|+++|+.+++ ...+.. +.. ...+ .
T Consensus 251 ~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~-------~~~~i~~~d~~tg~~~~~~~~~~~----l~~---~~~~-~- 314 (740)
T 4a5s_A 251 APASMLIGDHYLCDVTWATQERISLQWLRRIQ-------NYSVMDICDYDESSGRWNCLVARQ----HIE---MSTT-G- 314 (740)
T ss_dssp CCHHHHTSCEEEEEEEEEETTEEEEEEEESST-------TEEEEEEEEEETTTTEEEECGGGC----EEE---ECSS-S-
T ss_pred CCccCCCCCeEEEEEEEeCCCeEEEEEeCCCC-------CEEEEEEEECCCCccccceeEEEE----eee---ccCC-c-
Confidence 4 4456788999999998888877652 34579999998876 111100 000 0000 0
Q ss_pred cccccc--CCCCCccccCCCEEE-EEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeC--C-CCC
Q 003886 439 PGLYSS--SILSNPWLSDGCTML-LSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS--P-VDV 512 (789)
Q Consensus 439 ~g~~~~--~~~~~~ws~Dg~~l~-~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss--~-~~p 512 (789)
|.. ....+.|+|||+.|+ +.+..+|..+||.+|+++++.++||....... ..++.|++.|+|+.+. . ..-
T Consensus 315 ---~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~-~~~~~d~~~i~f~~~~~~~~~~~ 390 (740)
T 4a5s_A 315 ---WVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVI-GIEALTSDYLYYISNEYKGMPGG 390 (740)
T ss_dssp ---CSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEE-EEEEECSSEEEEEESCGGGCTTC
T ss_pred ---eEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEE-EEEEEeCCEEEEEEecCCCCCce
Confidence 110 123678999999988 66667788999999999999999998765433 2455778888888865 1 223
Q ss_pred CeEEEEeeccc
Q 003886 513 PQVKYGYFVDK 523 (789)
Q Consensus 513 ~~i~~~~~~~~ 523 (789)
..||++++.++
T Consensus 391 ~~ly~v~~~g~ 401 (740)
T 4a5s_A 391 RNLYKIQLIDY 401 (740)
T ss_dssp BEEEEEETTEE
T ss_pred eEEEEEECCCC
Confidence 56888776543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8.4e-20 Score=201.45 Aligned_cols=244 Identities=17% Similarity=0.148 Sum_probs=180.8
Q ss_pred CCCCeEEEEecCCCCC--CeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCC
Q 003886 163 PSGSKLLVVRNPENES--PIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 239 (789)
Q Consensus 163 PdG~~la~~~~~~~~~--~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 239 (789)
+.+++|+|++...++. ..++..+ .++..+.++.....+ ..++|||||++|||.+.+.
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v----------~~~~~Spdg~~la~~s~~~---------- 200 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPL----------MSPAWSPDGSKLAYVTFES---------- 200 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCE----------EEEEECTTSSEEEEEECTT----------
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcc----------eeeEEcCCCCEEEEEEecC----------
Confidence 4589999998764221 4555555 444445554433333 7899999999999987543
Q ss_pred CCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeec
Q 003886 240 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (789)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~ 319 (789)
+...|++||+.+|+.+.+. .....+..++|||||+. |+|++..
T Consensus 201 -------------------------------~~~~i~~~d~~tg~~~~l~--~~~~~~~~~~~spdg~~----la~~~~~ 243 (415)
T 2hqs_A 201 -------------------------------GRSALVIQTLANGAVRQVA--SFPRHNGAPAFSPDGSK----LAFALSK 243 (415)
T ss_dssp -------------------------------SSCEEEEEETTTCCEEEEE--CCSSCEEEEEECTTSSE----EEEEECT
T ss_pred -------------------------------CCcEEEEEECCCCcEEEee--cCCCcccCEEEcCCCCE----EEEEEec
Confidence 2368999999999988873 34446789999999999 9988743
Q ss_pred CCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCC
Q 003886 320 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 399 (789)
Q Consensus 320 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~ 399 (789)
. ....||++|+ .+++.++|+.+...+..++|||||++|+|.+.++
T Consensus 244 ~------------g~~~i~~~d~-----------------~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~------ 288 (415)
T 2hqs_A 244 T------------GSLNLYVMDL-----------------ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA------ 288 (415)
T ss_dssp T------------SSCEEEEEET-----------------TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTT------
T ss_pred C------------CCceEEEEEC-----------------CCCCEEeCcCCCCcccceEECCCCCEEEEEECCC------
Confidence 2 2347999998 7778888988877788999999999999998654
Q ss_pred ccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003886 400 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (789)
Q Consensus 400 ~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~ 479 (789)
+..+||++|+.++..+.++.... .+..+.|+|||+.|++.+...+...|+.+|+.+++
T Consensus 289 --g~~~i~~~d~~~~~~~~l~~~~~--------------------~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 289 --GRPQVYKVNINGGAPQRITWEGS--------------------QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp --SSCEEEEEETTSSCCEECCCSSS--------------------EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred --CCcEEEEEECCCCCEEEEecCCC--------------------cccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 24579999998766443322111 12256899999999988877777899999999999
Q ss_pred EEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 480 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 480 ~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
.+.++... ......|+++|+.|++...... ...|++.++.+
T Consensus 347 ~~~l~~~~-~~~~~~~spdg~~l~~~s~~~~-~~~l~~~d~~g 387 (415)
T 2hqs_A 347 VQVLSSTF-LDETPSLAPNGTMVIYSSSQGM-GSVLNLVSTDG 387 (415)
T ss_dssp EEECCCSS-SCEEEEECTTSSEEEEEEEETT-EEEEEEEETTS
T ss_pred EEEecCCC-CcCCeEEcCCCCEEEEEEcCCC-ccEEEEEECCC
Confidence 98887654 4556789999999888775443 34688888653
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.2e-21 Score=207.60 Aligned_cols=311 Identities=13% Similarity=0.137 Sum_probs=201.2
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecc-cEEEEeCCCCCeEEEEecCCCCCC
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTG-ASAVVPSPSGSKLLVVRNPENESP 179 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~-~~~~~~SPdG~~la~~~~~~~~~~ 179 (789)
.+.+||||++|+|.... .....||++++ .+++.++++... .. ...+.|||||++|+|++...
T Consensus 40 ~~~~SpdG~~l~~~~~~------~g~~~l~~~d~--~~~~~~~l~~~~-----~~~~~~~~~spdg~~l~~~~~~~---- 102 (396)
T 3c5m_A 40 QKCFTQDGKKLLFAGDF------DGNRNYYLLNL--ETQQAVQLTEGK-----GDNTFGGFISTDERAFFYVKNEL---- 102 (396)
T ss_dssp SCCBCTTSCEEEEEECT------TSSCEEEEEET--TTTEEEECCCSS-----CBCTTTCEECTTSSEEEEEETTT----
T ss_pred cCcCCCCCCEEEEEEec------CCCceEEEEEC--CCCcEEEeecCC-----CCccccceECCCCCEEEEEEcCC----
Confidence 35678999999998653 13457888876 344555665443 12 22388999999999998764
Q ss_pred eEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcce
Q 003886 180 IQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 258 (789)
Q Consensus 180 ~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (789)
+++.++ .+++.++++... .. |+|||++|+|.+...... .+.....
T Consensus 103 ~l~~~d~~~~~~~~~~~~~-------------~~--~~~~g~~l~~~~~~~~~~-------------------~~~~~~~ 148 (396)
T 3c5m_A 103 NLMKVDLETLEEQVIYTVD-------------EE--WKGYGTWVANSDCTKLVG-------------------IEILKRD 148 (396)
T ss_dssp EEEEEETTTCCEEEEEECC-------------TT--EEEEEEEEECTTSSEEEE-------------------EEEEGGG
T ss_pred cEEEEECCCCCcEEEEecc-------------cc--cCCCCCEEEeccCCcccc-------------------ccccccc
Confidence 577777 566666655532 11 888888888764321100 0000112
Q ss_pred eeCCcccccC-----CccCceEEEEEccCCceEeccCCCCCCccceEEEee-CCCCCccEEEEEeecCCceeeeeeeecc
Q 003886 259 WEEDWGETYA-----GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP-LNEGLHQYLVFVGWSSETRKLGIKYCYN 332 (789)
Q Consensus 259 ~~~d~g~~~~-----~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP-Dg~~~~~~l~f~~~~~~~~~~g~~~~~~ 332 (789)
|++|...... ......|+++|+++++.+.+ ......+..+.||| ||+. |+|++.... ..
T Consensus 149 ~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~--~~~~~~~~~~~~sp~dg~~----l~~~~~~~~---------~~ 213 (396)
T 3c5m_A 149 WQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI--HQDTAWLGHPIYRPFDDST----VGFCHEGPH---------DL 213 (396)
T ss_dssp CCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE--EEESSCEEEEEEETTEEEE----EEEEECSCS---------SS
T ss_pred cCCCCcceeeeeeccCCCcceEEEEECCCCcEEee--ccCCcccccceECCCCCCE----EEEEecCCC---------CC
Confidence 2333211110 12457899999999998887 34445677899999 8998 999874111 01
Q ss_pred CCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCC--CccCcceecCCCCEEEEEecCCCCCCCCccccceeEEee
Q 003886 333 RPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI--SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 410 (789)
Q Consensus 333 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~--~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d 410 (789)
....||.+|+ +++..+.|+... ..+..+.|||||++|+|.+.... .....|+++|
T Consensus 214 ~~~~l~~~d~-----------------~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~------~~~~~l~~~d 270 (396)
T 3c5m_A 214 VDARMWLVNE-----------------DGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKG------QTDRVIYKAN 270 (396)
T ss_dssp CSCCCEEEET-----------------TSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETT------TCCEEEEEEC
T ss_pred CCceEEEEEC-----------------CCCceeEeeccCCCccccceEECCCCCEEEEEecCCC------CccceEEEEE
Confidence 2257999998 666777776632 24677899999999999987641 1123499999
Q ss_pred cCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCcccc-CCCEEEEEEE-------------eCCeEEEEEEECC
Q 003886 411 WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS-DGCTMLLSSI-------------WGSSQVIISVNVS 476 (789)
Q Consensus 411 ~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~-Dg~~l~~~~~-------------~~~~~~l~~~dl~ 476 (789)
+.++..+.++. +++ .. +.|+| ||+.+++... ..+...||.+|+.
T Consensus 271 ~~~g~~~~l~~----------------~~~-----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~ 328 (396)
T 3c5m_A 271 PETLENEEVMV----------------MPP-----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK 328 (396)
T ss_dssp TTTCCEEEEEE----------------CCS-----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred CCCCCeEEeee----------------CCC-----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence 98765432211 111 11 57999 9997665432 1245789999999
Q ss_pred CCcEEEecCCCCC-----------ceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 477 SGELLRITPAESN-----------FSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 477 tg~~~~lt~~~~~-----------~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
+++.++++..... .....|++||+.|++..... ..+.||.+++.++
T Consensus 329 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~-~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 329 AKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFE-GVPAIYIADVPES 385 (396)
T ss_dssp TTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTT-SSCEEEEEECCTT
T ss_pred cCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCC-CCceEEEEEEccc
Confidence 9988888765431 23357899999998887654 4567999887654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.9e-20 Score=217.11 Aligned_cols=312 Identities=13% Similarity=0.090 Sum_probs=199.6
Q ss_pred ceEEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcc--------e------------eccc
Q 003886 97 KAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPV--------E------------MTGA 156 (789)
Q Consensus 97 ~~~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~--------~------------~~~~ 156 (789)
.....+.+||||++++|..... .+.....||++++.+ ++.++++...... + ...+
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d---~~~~~~~i~~~d~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 111 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKD---SDRNQLDLWSYDIGS--GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGI 111 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCS---SCTTEEEEEEEETTT--CCEEEEECGGGTC--------------------CCEES
T ss_pred CCCCCceEecCCCEEEEEeccC---CCCcccEEEEEECCC--CceeEccchhhcccccccccchhhhhhhhhhhccccCc
Confidence 3445667789999999976421 112345889988633 3444443221000 0 0125
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCC---ceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 157 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQS---QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~---~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
..++|||||++|+|.+. .+++.++ .++ +..+++.....+ ..++|||||++|||++.
T Consensus 112 ~~~~~SpDg~~l~~~~~-----~~i~~~d~~~~~~~~~~~l~~~~~~~----------~~~~~SPDG~~la~~~~----- 171 (741)
T 2ecf_A 112 VDYQWSPDAQRLLFPLG-----GELYLYDLKQEGKAAVRQLTHGEGFA----------TDAKLSPKGGFVSFIRG----- 171 (741)
T ss_dssp CCCEECTTSSEEEEEET-----TEEEEEESSSCSTTSCCBCCCSSSCE----------EEEEECTTSSEEEEEET-----
T ss_pred ceeEECCCCCEEEEEeC-----CcEEEEECCCCCcceEEEcccCCccc----------ccccCCCCCCEEEEEeC-----
Confidence 78899999999999886 2466666 444 444433322222 78999999999999732
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCc----------------
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLS---------------- 296 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~---------------- 296 (789)
..|++||+.+++.++++ .....
T Consensus 172 ----------------------------------------~~i~~~d~~~g~~~~~~--~~~~~~~~~g~~~~v~~~~~~ 209 (741)
T 2ecf_A 172 ----------------------------------------RNLWVIDLASGRQMQLT--ADGSTTIGNGIAEFVADEEMD 209 (741)
T ss_dssp ----------------------------------------TEEEEEETTTTEEEECC--CCCCSSEEESCCCHHHHHHSC
T ss_pred ----------------------------------------CcEEEEecCCCCEEEec--cCCccceeccccceeeeeccc
Confidence 36999999999888873 22211
Q ss_pred -cceEEEeeCCCCCccEEEEEeecCCcee--------------eeeeee----ccCCcceEEEecccccchhhhhhhhcC
Q 003886 297 -VGQVVWAPLNEGLHQYLVFVGWSSETRK--------------LGIKYC----YNRPCALYAVRVSLYKSEASELELKES 357 (789)
Q Consensus 297 -~~~~~wSPDg~~~~~~l~f~~~~~~~~~--------------~g~~~~----~~~~~~l~~~d~~~~~~~~~~~~~~~~ 357 (789)
...+.|||||+. |+|.+....... ....|. .+....||++|+
T Consensus 210 ~~~~~~~SpDg~~----l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~--------------- 270 (741)
T 2ecf_A 210 RHTGYWWAPDDSA----IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP--------------- 270 (741)
T ss_dssp CCCSEEECTTSSC----EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS---------------
T ss_pred cccceEECCCCCE----EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC---------------
Confidence 467999999999 999875432100 000000 012237899998
Q ss_pred CCCC-CCeeecCC---CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeecc
Q 003886 358 SSED-LPVVNLTE---SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA 433 (789)
Q Consensus 358 ~~~~-~~~~~Lt~---~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~ 433 (789)
++ ++.+.+.. +...+..++| |||++|++.+.... .....|+++|+.++..+.+.....
T Consensus 271 --~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~------~~~~~i~~~d~~~g~~~~~~~~~~--------- 332 (741)
T 2ecf_A 271 --AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRD------QKKLDLVEVTLASNQQRVLAHETS--------- 332 (741)
T ss_dssp --STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETT------SSEEEEEEEETTTCCEEEEEEEEC---------
T ss_pred --CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEeccc------CCeEEEEEEECCCCceEEEEEcCC---------
Confidence 66 66666652 3445778999 99999999886431 134679999998866433221110
Q ss_pred CCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeE-EeeecCCEEEEEEeCCCC-
Q 003886 434 EGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWS-LLTLDGDNIIAVSSSPVD- 511 (789)
Q Consensus 434 ~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~-~~s~dg~~l~~~~ss~~~- 511 (789)
.. |...+..+.|+|||+ +++++..++...||.+|++++ .+.++......... .|++||+.|++..+....
T Consensus 333 -~~-----~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~ 404 (741)
T 2ecf_A 333 -PT-----WVPLHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESAR 404 (741)
T ss_dssp -SS-----CCCCCSCCEECTTSC-EEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTT
T ss_pred -CC-----cCCcCCceEECCCCe-EEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCc
Confidence 00 111234678999999 777777778889999998766 88887765544333 589999998887764331
Q ss_pred CCeEEEEee
Q 003886 512 VPQVKYGYF 520 (789)
Q Consensus 512 p~~i~~~~~ 520 (789)
...||..+.
T Consensus 405 ~~~l~~~~~ 413 (741)
T 2ecf_A 405 ESQIYAVPL 413 (741)
T ss_dssp CBEEEEEET
T ss_pred eEEEEEEEc
Confidence 234666554
|
| >4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A 4ao8_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=194.08 Aligned_cols=175 Identities=17% Similarity=0.181 Sum_probs=120.8
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC-
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG- 648 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~- 648 (789)
+.||.+|+|+++.|. ...+.|+||++||+++......+....+.|+++||+|+++|+||++..+............
T Consensus 37 ~~dG~~i~g~l~~P~---~~~~~p~Vl~~HG~g~~~~~~~~~~~a~~la~~Gy~Vl~~D~rG~G~s~~~~~~~~~~~~~~ 113 (259)
T 4ao6_A 37 EVDGRTVPGVYWSPA---EGSSDRLVLLGHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGPGHGERASVQAGREPTDVVG 113 (259)
T ss_dssp EETTEEEEEEEEEES---SSCCSEEEEEEC--------CHHHHHHHHHHHTTEEEEEECCCC-------------CCGGG
T ss_pred eeCCeEEEEEEEeCC---CCCCCCEEEEeCCCcccccchHHHHHHHHHHHCCCeEEeeccCCCCCCCCcccccccchhhh
Confidence 458999999999997 4567899999999887655556677788999999999999999965443322111111110
Q ss_pred --------------cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcC
Q 003886 649 --------------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT 714 (789)
Q Consensus 649 --------------~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~ 714 (789)
...+.|..++++++... +|.+||+++|+|+||+++++++...| +++++|+..+....
T Consensus 114 ~~~~~~~~~~~~~~~~~~~d~~a~l~~l~~~--~d~~rv~~~G~S~GG~~a~~~a~~~p-ri~Aav~~~~~~~~------ 184 (259)
T 4ao6_A 114 LDAFPRMWHEGGGTAAVIADWAAALDFIEAE--EGPRPTGWWGLSMGTMMGLPVTASDK-RIKVALLGLMGVEG------ 184 (259)
T ss_dssp STTHHHHHHHTTHHHHHHHHHHHHHHHHHHH--HCCCCEEEEECTHHHHHHHHHHHHCT-TEEEEEEESCCTTS------
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHhhhc--cCCceEEEEeechhHHHHHHHHhcCC-ceEEEEEecccccc------
Confidence 11145677788887665 68999999999999999999999877 57777765432210
Q ss_pred CCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 715 TDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.. ..++...+.+|++|+|++||++|.+||++++.++|++|..
T Consensus 185 -----------------------~~--------~~~~~~~a~~i~~P~Li~hG~~D~~vp~~~~~~l~~al~~ 226 (259)
T 4ao6_A 185 -----------------------VN--------GEDLVRLAPQVTCPVRYLLQWDDELVSLQSGLELFGKLGT 226 (259)
T ss_dssp -----------------------TT--------HHHHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHHCCC
T ss_pred -----------------------cc--------ccchhhhhccCCCCEEEEecCCCCCCCHHHHHHHHHHhCC
Confidence 00 0122345678999999999999999999999999999864
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-20 Score=202.30 Aligned_cols=291 Identities=15% Similarity=0.082 Sum_probs=186.9
Q ss_pred EEEEEEeecCCCCccceeecCCcceecccEE-----EEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCcc
Q 003886 128 FMLSTVISKENENSVTFQWAPFPVEMTGASA-----VVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVH 201 (789)
Q Consensus 128 ~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~-----~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~ 201 (789)
.+|... ..+...++||..+ ..... |+|||||++|||.+..+ +..++|.++ .+++.++++......
T Consensus 12 ~~~~~~--~~g~~~~~lt~~~-----~~~~~~~~~~~~~SpDg~~l~~~~~~~-g~~~l~~~d~~~g~~~~lt~~~~~~- 82 (388)
T 3pe7_A 12 DTYQDA--STGAQVTRLTPPD-----VTCHRNYFYQKCFTRDGSKLLFGGAFD-GPWNYYLLDLNTQVATQLTEGRGDN- 82 (388)
T ss_dssp EEEECT--TTCCEEEECSCTT-----SCEECCCTTSCCBCTTSCEEEEEECTT-SSCEEEEEETTTCEEEECCCSSCBC-
T ss_pred eEEecC--CCCcceEEecCCc-----ccccchhhcCccCCCCCCEEEEEEcCC-CCceEEEEeCCCCceEEeeeCCCCC-
Confidence 455533 3444566776554 22333 89999999999998754 566788888 567766665543222
Q ss_pred ccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEcc
Q 003886 202 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 281 (789)
Q Consensus 202 g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 281 (789)
...+.|||||++|+|...+ ..|+++|++
T Consensus 83 --------~~~~~~spdg~~l~~~~~~--------------------------------------------~~l~~~d~~ 110 (388)
T 3pe7_A 83 --------TFGGFLSPDDDALFYVKDG--------------------------------------------RNLMRVDLA 110 (388)
T ss_dssp --------SSSCEECTTSSEEEEEETT--------------------------------------------TEEEEEETT
T ss_pred --------ccceEEcCCCCEEEEEeCC--------------------------------------------CeEEEEECC
Confidence 1367899999999997532 479999999
Q ss_pred CCceEeccCCCCCC-ccceEEEeeCCCCCccEEEEEeecCCcee-----eee--eeeccCCcceEEEecccccchhhhhh
Q 003886 282 SGEVQAVKGIPKSL-SVGQVVWAPLNEGLHQYLVFVGWSSETRK-----LGI--KYCYNRPCALYAVRVSLYKSEASELE 353 (789)
Q Consensus 282 ~g~~~~l~~~~~~~-~~~~~~wSPDg~~~~~~l~f~~~~~~~~~-----~g~--~~~~~~~~~l~~~d~~~~~~~~~~~~ 353 (789)
+++.+.+...+... ......++|||+. ++.......... .++ .+.......||++|+
T Consensus 111 ~g~~~~~~~~~~~~~~~~~~~~~~dg~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~----------- 175 (388)
T 3pe7_A 111 TLEENVVYQVPAEWVGYGTWVANSDCTK----LVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDL----------- 175 (388)
T ss_dssp TCCEEEEEECCTTEEEEEEEEECTTSSE----EEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEET-----------
T ss_pred CCcceeeeechhhcccccceeECCCCCe----eccccccCcccccccccchhhhhhccCCcceEEEEEC-----------
Confidence 99887763222221 1122345899998 775432111000 000 001123458999998
Q ss_pred hhcCCCCCCCeeecCCCCCccCcceecC-CCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeec
Q 003886 354 LKESSSEDLPVVNLTESISSAFFPRFSP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC 432 (789)
Q Consensus 354 ~~~~~~~~~~~~~Lt~~~~~~~~p~~Sp-DG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~ 432 (789)
.+++.+.|+........++||| ||++|+|.+.... .....+||++|..++..+.++......
T Consensus 176 ------~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~-----~~~~~~l~~~d~~~~~~~~l~~~~~~~------ 238 (388)
T 3pe7_A 176 ------KTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPH-----DLVDARMWLINEDGTNMRKVKTHAEGE------ 238 (388)
T ss_dssp ------TTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCT-----TTSSCSEEEEETTSCCCEESCCCCTTE------
T ss_pred ------CCCceEEeecCCccccccEECCCCCCEEEEEEecCC-----CCCcceEEEEeCCCCceEEeeeCCCCc------
Confidence 7788888887766778999999 9999999986421 112457999998876655444322100
Q ss_pred cCCCCCccccccCCCCCccccCCCEEEEEEEeCCeE--EEEEEECCCCcEEEecCCCCC------ceeEEeeecCCEEEE
Q 003886 433 AEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ--VIISVNVSSGELLRITPAESN------FSWSLLTLDGDNIIA 504 (789)
Q Consensus 433 ~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~--~l~~~dl~tg~~~~lt~~~~~------~~~~~~s~dg~~l~~ 504 (789)
.+..+.|||||+.|+|.+...+.. .||.+|+++|+.+.++...+. .....|++||+.|++
T Consensus 239 ------------~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~ 306 (388)
T 3pe7_A 239 ------------SCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPV 306 (388)
T ss_dssp ------------EEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC--
T ss_pred ------------ccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCccee
Confidence 112457999999998888776554 599999999998887654320 111368999999888
Q ss_pred EEeC-----CCCCCeEEEEeeccc
Q 003886 505 VSSS-----PVDVPQVKYGYFVDK 523 (789)
Q Consensus 505 ~~ss-----~~~p~~i~~~~~~~~ 523 (789)
.... ......|++.++.++
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 307 DVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp ----------CCCCEEEEEETTTT
T ss_pred EeeeccccccCCCCEEEEEeccCC
Confidence 7643 245567999987654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=214.88 Aligned_cols=314 Identities=11% Similarity=0.038 Sum_probs=192.6
Q ss_pred EEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCC-
Q 003886 99 WTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE- 177 (789)
Q Consensus 99 ~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~- 177 (789)
.....+||||+.+ +. + ..+.++++++.+. +..++....- .....+..++|||||++|||.......
T Consensus 19 ~~~~~~spdg~~~-~~-~--------~dg~i~~~d~~~g--~~~~~~~~~~-~~~~~v~~~~~SpDg~~l~~~~~~~~~~ 85 (723)
T 1xfd_A 19 DPEAKWISDTEFI-YR-E--------QKGTVRLWNVETN--TSTVLIEGKK-IESLRAIRYEISPDREYALFSYNVEPIY 85 (723)
T ss_dssp CCCCCBSSSSCBC-CC-C--------SSSCEEEBCGGGC--CCEEEECTTT-TTTTTCSEEEECTTSSEEEEEESCCCCS
T ss_pred ccccEEcCCCcEE-EE-e--------CCCCEEEEECCCC--cEEEEecccc-ccccccceEEECCCCCEEEEEecCccce
Confidence 4456789999955 32 1 1236788776433 3333332210 000137789999999999999765422
Q ss_pred ----CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCC
Q 003886 178 ----SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNS 252 (789)
Q Consensus 178 ----~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (789)
..++++.+ .+++.+++.... ... .....++|||||++|||++.
T Consensus 86 ~~~~~~~i~~~d~~~~~~~~l~~~~-~~~------~~~~~~~~SPdG~~la~~~~------------------------- 133 (723)
T 1xfd_A 86 QHSYTGYYVLSKIPHGDPQSLDPPE-VSN------AKLQYAGWGPKGQQLIFIFE------------------------- 133 (723)
T ss_dssp SSCCCSEEEEEESSSCCCEECCCTT-CCS------CCCSBCCBCSSTTCEEEEET-------------------------
T ss_pred eecceeeEEEEECCCCceEeccCCc-ccc------ccccccEECCCCCEEEEEEC-------------------------
Confidence 14555555 455553333221 111 11268999999999999742
Q ss_pred CCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCC------------------ccceEEEeeCCCCCccEEE
Q 003886 253 WKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL------------------SVGQVVWAPLNEGLHQYLV 314 (789)
Q Consensus 253 ~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~------------------~~~~~~wSPDg~~~~~~l~ 314 (789)
..|+++|+++|+.++++. .... ....++|||||+. |+
T Consensus 134 --------------------~~i~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~----la 188 (723)
T 1xfd_A 134 --------------------NNIYYCAHVGKQAIRVVS-TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR----LA 188 (723)
T ss_dssp --------------------TEEEEESSSSSCCEEEEC-CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE----EE
T ss_pred --------------------CeEEEEECCCCceEEEec-CCCCCceECcccceeEEEEeccCcceEEECCCCCE----EE
Confidence 469999999998887741 1111 1257999999999 99
Q ss_pred EEeecCCceee---------------eeeee----ccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCC----
Q 003886 315 FVGWSSETRKL---------------GIKYC----YNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTES---- 370 (789)
Q Consensus 315 f~~~~~~~~~~---------------g~~~~----~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~---- 370 (789)
|.+......+. ...|. .+....|+++|+ .+++ .+.|+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~-----------------~~~~~~~~l~~~~~~~ 251 (723)
T 1xfd_A 189 YAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL-----------------NGPTHDLEMMPPDDPR 251 (723)
T ss_dssp EEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES-----------------SSSCCCEECCCCCCGG
T ss_pred EEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC-----------------CCCceeEEeeCCccCC
Confidence 98754321000 00000 011237999998 5555 3666653
Q ss_pred --CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCcccccc-CCC
Q 003886 371 --ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS-SIL 447 (789)
Q Consensus 371 --~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~-~~~ 447 (789)
...+..++|||||+.|++.+.+. .....|+++|+.+++...+..... . . |.. ...
T Consensus 252 ~~~~~~~~~~~SpDg~~l~~~~~~~-------~~~~~i~~~d~~~g~~~~~~~~~~----------~-~----~~~~~~~ 309 (723)
T 1xfd_A 252 MREYYITMVKWATSTKVAVTWLNRA-------QNVSILTLCDATTGVCTKKHEDES----------E-A----WLHRQNE 309 (723)
T ss_dssp GSSEEEEEEEESSSSEEEEEEEETT-------SCEEEEEEEETTTCCEEEEEEEEC----------S-S----CCCCCCC
T ss_pred CccceeEEEEEeCCCeEEEEEEcCC-------CCeEEEEEEeCCCCcceEEEEecc----------C-C----EEeccCC
Confidence 34567899999999887776653 134579999998765432211100 0 0 000 013
Q ss_pred CCccccCCCEEEEE-EEeCC----eEEEEEEE-CCCCc---EEEecCCCCCce-eEEeeecCCEEEEEEeCCC-CCCeEE
Q 003886 448 SNPWLSDGCTMLLS-SIWGS----SQVIISVN-VSSGE---LLRITPAESNFS-WSLLTLDGDNIIAVSSSPV-DVPQVK 516 (789)
Q Consensus 448 ~~~ws~Dg~~l~~~-~~~~~----~~~l~~~d-l~tg~---~~~lt~~~~~~~-~~~~s~dg~~l~~~~ss~~-~p~~i~ 516 (789)
.+.|||||+.|++. +...+ ..+||.+| ..+++ .+.++....... ...|++||+.|++...... .-..||
T Consensus 310 ~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 389 (723)
T 1xfd_A 310 EPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLY 389 (723)
T ss_dssp CCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred CceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEE
Confidence 67899999999887 55555 67899999 67777 777775544332 2479999999988876531 223466
Q ss_pred EEeec
Q 003886 517 YGYFV 521 (789)
Q Consensus 517 ~~~~~ 521 (789)
.++..
T Consensus 390 ~~~~~ 394 (723)
T 1xfd_A 390 SANTV 394 (723)
T ss_dssp EECSS
T ss_pred EEeCC
Confidence 66544
|
| >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-19 Score=196.52 Aligned_cols=191 Identities=16% Similarity=0.080 Sum_probs=141.2
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~ 651 (789)
+|.+++++++.|++ .++.|+||++||++.. ...+....+.|+++||.|+++|+|| +|.+. .......+
T Consensus 135 dg~~i~~~l~~p~~---~~~~P~vl~~hG~~~~--~~~~~~~~~~l~~~G~~v~~~d~rG---~G~s~----~~~~~~~~ 202 (386)
T 2jbw_A 135 DGIPMPVYVRIPEG---PGPHPAVIMLGGLEST--KEESFQMENLVLDRGMATATFDGPG---QGEMF----EYKRIAGD 202 (386)
T ss_dssp TTEEEEEEEECCSS---SCCEEEEEEECCSSCC--TTTTHHHHHHHHHTTCEEEEECCTT---SGGGT----TTCCSCSC
T ss_pred CCEEEEEEEEcCCC---CCCCCEEEEeCCCCcc--HHHHHHHHHHHHhCCCEEEEECCCC---CCCCC----CCCCCCcc
Confidence 78999999999974 3678999999987654 2333334788999999999999998 44441 11111223
Q ss_pred -HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCcc
Q 003886 652 -VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 730 (789)
Q Consensus 652 -~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (789)
.+++.++++++.+++.+|.++|+|+|||+||+++++++.+ |++|+++|+. |+.++...... .+. .....
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~la~~~a~~-~~~~~a~v~~-~~~~~~~~~~~--~~~-~~~~~----- 272 (386)
T 2jbw_A 203 YEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAAC-EPRLAACISW-GGFSDLDYWDL--ETP-LTKES----- 272 (386)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHH-CTTCCEEEEE-SCCSCSTTGGG--SCH-HHHHH-----
T ss_pred HHHHHHHHHHHHHhCCCcCcccEEEEEEChHHHHHHHHHcC-CcceeEEEEe-ccCChHHHHHh--ccH-HHHHH-----
Confidence 3568889999999888899999999999999999999998 8899999999 98876443321 000 00000
Q ss_pred ccccCCC-CChhhH-HHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHC
Q 003886 731 KDSFTES-PSVEDL-TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHI 785 (789)
Q Consensus 731 ~~~~~~~-~~~~~~-~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l 785 (789)
.....+. ...+.. ..+...++...+.++++|+|++||++|. ||+.++.++++++
T Consensus 273 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-v~~~~~~~l~~~l 328 (386)
T 2jbw_A 273 WKYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLSFVDTVLELV 328 (386)
T ss_dssp HHHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SCTHHHHHHHHHS
T ss_pred HHHHhCCCCHHHHHHHHHHhCChhhhhcccCCCEEEEECCCCC-CCHHHHHHHHHHh
Confidence 0001111 122333 5567788888899999999999999999 9999999999998
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-18 Score=179.26 Aligned_cols=263 Identities=14% Similarity=0.141 Sum_probs=180.1
Q ss_pred cceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC-CceeEEEecCCCcc
Q 003886 124 KRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ-SQLEKEFHVPQTVH 201 (789)
Q Consensus 124 ~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~-~~~~~~~~~~~~~~ 201 (789)
.....|+++++. .++.+.+.... ..+..++|||||++|++..+. .++.++ .+ ++..++..... .
T Consensus 19 ~~~~~i~~~d~~--~~~~~~~~~~~-----~~v~~~~~spdg~~l~~~~~~-----~i~~~d~~~~~~~~~~~~~~~--~ 84 (297)
T 2ojh_A 19 SMRSSIEIFNIR--TRKMRVVWQTP-----ELFEAPNWSPDGKYLLLNSEG-----LLYRLSLAGDPSPEKVDTGFA--T 84 (297)
T ss_dssp CCCEEEEEEETT--TTEEEEEEEES-----SCCEEEEECTTSSEEEEEETT-----EEEEEESSSCCSCEECCCTTC--C
T ss_pred CcceeEEEEeCC--CCceeeeccCC-----cceEeeEECCCCCEEEEEcCC-----eEEEEeCCCCCCceEeccccc--c
Confidence 456678887763 33344444333 458899999999999997643 365555 44 55544432210 0
Q ss_pred ccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEcc
Q 003886 202 GSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ 281 (789)
Q Consensus 202 g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~ 281 (789)
.. ...+.|||||++|++...... ....||++++.
T Consensus 85 ~~------~~~~~~spdg~~l~~~~~~~~----------------------------------------~~~~l~~~~~~ 118 (297)
T 2ojh_A 85 IC------NNDHGISPDGALYAISDKVEF----------------------------------------GKSAIYLLPST 118 (297)
T ss_dssp CB------CSCCEECTTSSEEEEEECTTT----------------------------------------SSCEEEEEETT
T ss_pred cc------ccceEECCCCCEEEEEEeCCC----------------------------------------CcceEEEEECC
Confidence 11 268999999999999864321 24789999999
Q ss_pred CCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCC
Q 003886 282 SGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED 361 (789)
Q Consensus 282 ~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 361 (789)
+++.+.+. ... ....+.|+|||+. |+|++.... ...||.+++ .+
T Consensus 119 ~~~~~~~~--~~~-~~~~~~~spdg~~----l~~~~~~~~------------~~~l~~~~~-----------------~~ 162 (297)
T 2ojh_A 119 GGTPRLMT--KNL-PSYWHGWSPDGKS----FTYCGIRDQ------------VFDIYSMDI-----------------DS 162 (297)
T ss_dssp CCCCEECC--SSS-SEEEEEECTTSSE----EEEEEEETT------------EEEEEEEET-----------------TT
T ss_pred CCceEEee--cCC-CccceEECCCCCE----EEEEECCCC------------ceEEEEEEC-----------------CC
Confidence 88887773 222 3667899999999 998774322 236888887 66
Q ss_pred CCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccc
Q 003886 362 LPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 441 (789)
Q Consensus 362 ~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~ 441 (789)
+..+.++........+.|||||+.|++.+..+ +..+||.++..++....++....
T Consensus 163 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~----------------- 217 (297)
T 2ojh_A 163 GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRT--------GQMQIWRVRVDGSSVERITDSAY----------------- 217 (297)
T ss_dssp CCEEECCCSSSCEEEEEECTTSSEEEEEECTT--------SSCEEEEEETTSSCEEECCCCSE-----------------
T ss_pred CcceEcccCCCccccceECCCCCEEEEEecCC--------CCccEEEECCCCCCcEEEecCCc-----------------
Confidence 77788887777788999999999999887643 24568888766544333322111
Q ss_pred cccCCCCCccccCCCEEEEEEEeC--------CeEEEEEEECCCCcEEEecC---CCCCceeEEeeecCCEEEEEEeCCC
Q 003886 442 YSSSILSNPWLSDGCTMLLSSIWG--------SSQVIISVNVSSGELLRITP---AESNFSWSLLTLDGDNIIAVSSSPV 510 (789)
Q Consensus 442 ~~~~~~~~~ws~Dg~~l~~~~~~~--------~~~~l~~~dl~tg~~~~lt~---~~~~~~~~~~s~dg~~l~~~~ss~~ 510 (789)
.+..+.|+|||+.|++.+... +...|+.+|+.+++.+.+.. .........|+++|+.|++......
T Consensus 218 ---~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 294 (297)
T 2ojh_A 218 ---GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFPV 294 (297)
T ss_dssp ---EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECCC
T ss_pred ---ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEeccC
Confidence 123467999999998887764 34789999999988776653 2233445689999999988877654
|
| >1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR structure initiative, PSI, joint center for structural GENO hydrolase; 2.10A {Thermotoga maritima} SCOP: c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.6e-19 Score=193.42 Aligned_cols=210 Identities=13% Similarity=0.165 Sum_probs=145.5
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCch--hhc-cC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEE--ALQ-SL 643 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~--~~~-~~ 643 (789)
.+.+.+|.++.++++.|++. .++.|+||++||+++... +......|+++||.|+++|+||.++.+.. ... ..
T Consensus 72 ~~~~~dg~~i~~~~~~P~~~--~~~~p~vv~~HG~g~~~~---~~~~~~~l~~~G~~v~~~d~rG~g~s~~~~~~~~~p~ 146 (337)
T 1vlq_A 72 TFSGYRGQRIKGWLLVPKLE--EEKLPCVVQYIGYNGGRG---FPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPE 146 (337)
T ss_dssp EEECGGGCEEEEEEEEECCS--CSSEEEEEECCCTTCCCC---CGGGGCHHHHTTCEEEEECCTTCCCSSSCCCCCBCCS
T ss_pred EEEcCCCCEEEEEEEecCCC--CCCccEEEEEcCCCCCCC---CchhhcchhhCCCEEEEecCCCCCCcccCCCCccccc
Confidence 45666889999999999742 567899999999876532 22334577899999999999997644321 100 00
Q ss_pred ---CCCC--------C-------cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 644 ---PGKV--------G-------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 644 ---~~~~--------~-------~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
...+ . ...++|+.++++++.+++.+|.++|+|+|||+||++++.++.++| +++++|+.+|.
T Consensus 147 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p-~v~~~vl~~p~ 225 (337)
T 1vlq_A 147 GPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK-KAKALLCDVPF 225 (337)
T ss_dssp SSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-SCCEEEEESCC
T ss_pred ccCCCCCCcccccCCCCHHHhHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeCHHHHHHHHHHhcCC-CccEEEECCCc
Confidence 0000 0 134789999999999988889999999999999999999999988 59999999985
Q ss_pred c-chhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHH
Q 003886 706 C-NLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYH 784 (789)
Q Consensus 706 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~ 784 (789)
. ++..+........+.....+.. .. ..........+...++...+.++++|+|++||++|.+||++++.+++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~~p~~~~~~~~~~ 300 (337)
T 1vlq_A 226 LCHFRRAVQLVDTHPYAEITNFLK----TH-RDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPSTVFAAYNY 300 (337)
T ss_dssp SCCHHHHHHHCCCTTHHHHHHHHH----HC-TTCHHHHHHHHHTTCHHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHH
T ss_pred ccCHHHHHhcCCCcchHHHHHHHH----hC-chhHHHHHHhhhhccHHHHHHHcCCCEEEEeeCCCCCCCchhHHHHHHh
Confidence 4 4433321111111111000000 00 0001122333455677778889999999999999999999999999999
Q ss_pred CCC
Q 003886 785 IPF 787 (789)
Q Consensus 785 l~~ 787 (789)
++.
T Consensus 301 l~~ 303 (337)
T 1vlq_A 301 YAG 303 (337)
T ss_dssp CCS
T ss_pred cCC
Confidence 874
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=4e-19 Score=210.74 Aligned_cols=311 Identities=12% Similarity=0.110 Sum_probs=186.3
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCC----
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN---- 176 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~---- 176 (789)
.+.++|||+ +++.. ..+.|+++++. +++.++++...- .....+..++|||||++|||.+..++
T Consensus 20 ~~~~s~dg~-~~~~~---------~d~~i~~~~~~--~g~~~~~~~~~~-~~~~~~~~~~~SpDg~~la~~~~~~~~~~~ 86 (719)
T 1z68_A 20 FPNWISGQE-YLHQS---------ADNNIVLYNIE--TGQSYTILSNRT-MKSVNASNYGLSPDRQFVYLESDYSKLWRY 86 (719)
T ss_dssp CCEESSSSE-EEEEC---------TTSCEEEEESS--SCCEEEEECHHH-HHTTTCSEEEECTTSSEEEEEEEEEECSSS
T ss_pred ccEECCCCe-EEEEc---------CCCCEEEEEcC--CCcEEEEEcccc-ccccceeeEEECCCCCeEEEEecCceeEEe
Confidence 456789995 44431 13468888863 334445543220 00013778999999999999876321
Q ss_pred -CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCC
Q 003886 177 -ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK 254 (789)
Q Consensus 177 -~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (789)
...+++..+ .+++......+...+ ..++|||||++|||+.
T Consensus 87 s~~~~i~~~d~~~g~~~~~~~l~~~~----------~~~~~SPDG~~la~~~---------------------------- 128 (719)
T 1z68_A 87 SYTATYYIYDLSNGEFVRGNELPRPI----------QYLCWSPVGSKLAYVY---------------------------- 128 (719)
T ss_dssp CEEEEEEEEETTTTEECCSSCCCSSB----------CCEEECSSTTCEEEEE----------------------------
T ss_pred ecceEEEEEECCCCccccceecCccc----------ccceECCCCCEEEEEE----------------------------
Confidence 123455554 445441001122222 7899999999999973
Q ss_pred CcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCC------------------ccceEEEeeCCCCCccEEEEE
Q 003886 255 GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL------------------SVGQVVWAPLNEGLHQYLVFV 316 (789)
Q Consensus 255 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~------------------~~~~~~wSPDg~~~~~~l~f~ 316 (789)
+..|++||+.+|+.++++ ..+.. ....++|||||+. |+|.
T Consensus 129 -----------------~~~i~~~~~~~g~~~~l~-~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~----la~~ 186 (719)
T 1z68_A 129 -----------------QNNIYLKQRPGDPPFQIT-FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKF----LAYA 186 (719)
T ss_dssp -----------------TTEEEEESSTTSCCEECC-CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSE----EEEE
T ss_pred -----------------CCeEEEEeCCCCCcEEEe-cCCCcCCeEcccccceeeeecccCcccEEECCCCCE----EEEE
Confidence 147999999999888773 11211 1147999999999 9998
Q ss_pred eecCCc-eee--------------eeee----eccCCcceEEEecccccchhhhhhhhcCCCCCCCee---ec------C
Q 003886 317 GWSSET-RKL--------------GIKY----CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV---NL------T 368 (789)
Q Consensus 317 ~~~~~~-~~~--------------g~~~----~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~L------t 368 (789)
+.+... ... ...| ..+....|+++|+ ++++.. ++ .
T Consensus 187 ~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~-----------------~~~~~~~~~~~~~~~~~~ 249 (719)
T 1z68_A 187 EFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDT-----------------TYPAYVGPQEVPVPAMIA 249 (719)
T ss_dssp EEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEES-----------------SCHHHHCCEECCCCHHHH
T ss_pred EECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEEC-----------------CCCCccceeEccCCccCC
Confidence 854321 100 0000 0012237889998 444431 23 3
Q ss_pred CCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEee----cCCCCCCCcccceeeEEeeeeccCCCCCcccccc
Q 003886 369 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID----WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS 444 (789)
Q Consensus 369 ~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d----~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~ 444 (789)
.+......++|||||+.++...++. ....+|+++| ..+++.+.++..... . . .+ |..
T Consensus 250 ~~~~~~~~~~~SpD~~~~~~~~~~~-------~~~~~l~~~d~~~~~~~g~~~~~~~~~~~------~-~----~~-~~~ 310 (719)
T 1z68_A 250 SSDYYFSWLTWVTDERVCLQWLKRV-------QNVSVLSICDFREDWQTWDCPKTQEHIEE------S-R----TG-WAG 310 (719)
T ss_dssp TSCEEEEEEEESSSSEEEEEEEESS-------TTEEEEEEEEECSSSSSEECCGGGEEEEE------C-S----SS-CSS
T ss_pred CCcceEEEeEEeCCCeEEEEEeccc-------cCeEEEEEEcccCCCCCCceEEEEecccc------c-C----Cc-eEc
Confidence 3455678899999976444333332 1345799999 776655443310000 0 0 00 000
Q ss_pred --CCCCCccccCCCEEEEEE-EeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeC--C-CCCCeEEEE
Q 003886 445 --SILSNPWLSDGCTMLLSS-IWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS--P-VDVPQVKYG 518 (789)
Q Consensus 445 --~~~~~~ws~Dg~~l~~~~-~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss--~-~~p~~i~~~ 518 (789)
....+.|+|||+.|++.. ...+..+||.+|+.+++.++++.....+....++ +++.|+++... . ..-..+|..
T Consensus 311 ~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~ 389 (719)
T 1z68_A 311 GFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRI 389 (719)
T ss_dssp SSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEE
T ss_pred cccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEE
Confidence 012678999999888854 4567889999999999988998765544445566 89999888865 1 233457777
Q ss_pred eec
Q 003886 519 YFV 521 (789)
Q Consensus 519 ~~~ 521 (789)
++.
T Consensus 390 ~~~ 392 (719)
T 1z68_A 390 SIG 392 (719)
T ss_dssp ECS
T ss_pred eCC
Confidence 764
|
| >3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase, cinnamoyl/Fe esterase, hydroxycinammates, extracellular; HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-19 Score=182.28 Aligned_cols=206 Identities=12% Similarity=0.062 Sum_probs=141.1
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC-c
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG-S 649 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~-~ 649 (789)
.+|.+++++++.|. +++.|+||++||++++.....|......|+++||.|+++|+|| +|.+.... .... .
T Consensus 29 ~~g~~l~~~~~~p~----~~~~p~vv~~HG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~G---~G~s~~~~--~~~~~~ 99 (270)
T 3pfb_A 29 RDGLQLVGTREEPF----GEIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNG---HGDSDGKF--ENMTVL 99 (270)
T ss_dssp ETTEEEEEEEEECS----SSSEEEEEEECCTTCCTTCHHHHHHHHHHHHTTCEEEEECCTT---STTSSSCG--GGCCHH
T ss_pred cCCEEEEEEEEcCC----CCCCCEEEEEcCCCCCccccHHHHHHHHHHhCCcEEEEEcccc---ccCCCCCC--CccCHH
Confidence 47899999999885 3468999999998876445567778889999999999999998 44332111 1111 2
Q ss_pred ccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCc
Q 003886 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 729 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~ 729 (789)
..++|+.++++++.++ .+.++++|+|||+||++++.++.++|++++++|+.+|.................+.......
T Consensus 100 ~~~~d~~~~i~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (270)
T 3pfb_A 100 NEIEDANAILNYVKTD--PHVRNIYLVGHAQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHIPD 177 (270)
T ss_dssp HHHHHHHHHHHHHHTC--TTEEEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCTHHHHHHHHTEETTEECCTTSCCS
T ss_pred HHHHhHHHHHHHHHhC--cCCCeEEEEEeCchhHHHHHHHHhCchhhcEEEEeccccccchhhhhhhhhccccCcccccc
Confidence 2367888899998876 34469999999999999999999999999999999998765432111000000000000000
Q ss_pred cccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 730 GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
................+...+....+.++++|+|+++|++|..+|++.+.++++.+++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~ 235 (270)
T 3pfb_A 178 RLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLIHGTDDTVVSPNASKKYDQIYQN 235 (270)
T ss_dssp EEEETTEEEEHHHHHHHHHCCHHHHHTTCCSCEEEEEETTCSSSCTHHHHHHHHHCSS
T ss_pred cccccccccchhHhhcccccCHHHHHhhCCccEEEEEcCCCCCCCHHHHHHHHHhCCC
Confidence 0000000001122333444555667889999999999999999999999999998764
|
| >2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-19 Score=182.93 Aligned_cols=207 Identities=14% Similarity=0.156 Sum_probs=135.0
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC-cc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG-SQ 650 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~-~~ 650 (789)
+|.+++++++.|++ ..++.|+||++||.+.+.....|......|+++||.|+++|+|| +|.+.... ..+. ..
T Consensus 9 ~g~~l~~~~~~p~~--~~~~~p~vvl~HG~~~~~~~~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~~~--~~~~~~~ 81 (251)
T 2wtm_A 9 DGIKLNAYLDMPKN--NPEKCPLCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYG---HGKSDGKF--EDHTLFK 81 (251)
T ss_dssp TTEEEEEEEECCTT--CCSSEEEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEEEECCTT---STTSSSCG--GGCCHHH
T ss_pred CCcEEEEEEEccCC--CCCCCCEEEEEcCCCcccccccHHHHHHHHHHCCCEEEEecCCC---CCCCCCcc--ccCCHHH
Confidence 78899999998863 13467999999997765335567777889999999999999998 44432111 1111 12
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCcc
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 730 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (789)
..+|+.++++++.+...+ ++++|+|||+||.+++.++.++|++++++|+.+|...+.............+........
T Consensus 82 ~~~d~~~~~~~l~~~~~~--~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (251)
T 2wtm_A 82 WLTNILAVVDYAKKLDFV--TDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAAMIPEIARTGELLGLKFDPENIPDE 159 (251)
T ss_dssp HHHHHHHHHHHHTTCTTE--EEEEEEEETHHHHHHHHHHHHTTTTEEEEEEESCCTTHHHHHHHTEETTEECBTTBCCSE
T ss_pred HHHHHHHHHHHHHcCccc--ceEEEEEECcchHHHHHHHHhCcccceEEEEECcHHHhHHHHhhhhhccccCCchhcchH
Confidence 357888888888665323 589999999999999999999999999999999975432211000000000000000000
Q ss_pred ccccCCCC-ChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 731 KDSFTESP-SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 731 ~~~~~~~~-~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
...+.... ...........++...+.++++|+|++||++|..||++.+.++++.+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~G~~D~~v~~~~~~~~~~~~~~ 217 (251)
T 2wtm_A 160 LDAWDGRKLKGNYVRVAQTIRVEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQYKN 217 (251)
T ss_dssp EEETTTEEEETHHHHHHTTCCHHHHHHHCCSCEEEEEETTCSSSCHHHHHHHHHHSSS
T ss_pred HhhhhccccchHHHHHHHccCHHHHHHhcCCCEEEEEeCCCCCcChHHHHHHHHhCCC
Confidence 00000000 0011222223344445678899999999999999999999999988764
|
| >3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 3.20A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-19 Score=184.38 Aligned_cols=193 Identities=17% Similarity=0.201 Sum_probs=139.8
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~-~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
+...+|..+.+++..|....+.++.|+||++|||++.. ....+......|+++||.|+++|+||.+. +.. ..
T Consensus 19 ~~~~~g~~l~~~~~~~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~-s~~------~~ 91 (276)
T 3hxk_A 19 FSLNDTAWVDFYQLQNPRQNENYTFPAIIICPGGGYQHISQRESDPLALAFLAQGYQVLLLNYTVMNK-GTN------YN 91 (276)
T ss_dssp CCCBTTBEEEEECCCC------CCBCEEEEECCSTTTSCCGGGSHHHHHHHHHTTCEEEEEECCCTTS-CCC------SC
T ss_pred ccCCCCeEEEEEEeCCcccccCCCCCEEEEEcCCccccCCchhhHHHHHHHHHCCCEEEEecCccCCC-cCC------CC
Confidence 34557888887776664322347889999999977432 34456677889999999999999998532 110 01
Q ss_pred CCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHh-CCCceeEEEEeCCccchhhhhcCCCCCcchh
Q 003886 647 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMVGTTDIPDWCY 722 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~-~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~ 722 (789)
.....+.|+.++++++.++. .+|.++|+|+|||+||++++.++.+ .+++++++|+.+|+.++...+.... .
T Consensus 92 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~p~~~~~~~~~~~~--~--- 166 (276)
T 3hxk_A 92 FLSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTFGWPSDL--S--- 166 (276)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTTTBCTTCCEEEEEHHHHHHHHHHSSSCSTTCCSEEEEEEECCBTTSSCSSSS--S---
T ss_pred cCchHHHHHHHHHHHHHHhHHHcCCCcceEEEEEeCHHHHHHHHHHhhccCCCccEEEEecCcccHHhhCCcch--h---
Confidence 11234789999999998864 2788999999999999999999987 6889999999999887543311110 0
Q ss_pred hhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 723 VESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
...+. + +.. ...++...+.++.+|+|++||++|..||++++..+++.|++
T Consensus 167 --------~~~~~--~--~~~---~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~ 216 (276)
T 3hxk_A 167 --------HFNFE--I--ENI---SEYNISEKVTSSTPPTFIWHTADDEGVPIYNSLKYCDRLSK 216 (276)
T ss_dssp --------SSCCC--C--SCC---GGGBTTTTCCTTSCCEEEEEETTCSSSCTHHHHHHHHHHHT
T ss_pred --------hhhcC--c--hhh---hhCChhhccccCCCCEEEEecCCCceeChHHHHHHHHHHHH
Confidence 01111 1 111 45677778889999999999999999999999999998864
|
| >3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7; 2.10A {Thermoanaerobacterium SP} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=187.51 Aligned_cols=212 Identities=16% Similarity=0.183 Sum_probs=144.8
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCC--
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP-- 644 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~-- 644 (789)
.+...+|.+++++++.|.+ .++.|+||++||+++.. ..|.... .++++||.|+++|+||.++.+........
T Consensus 86 ~~~~~~g~~l~~~~~~P~~---~~~~p~vv~~HG~g~~~--~~~~~~~-~~~~~G~~v~~~D~rG~g~s~~~~~~~~~~~ 159 (346)
T 3fcy_A 86 YFTGVRGARIHAKYIKPKT---EGKHPALIRFHGYSSNS--GDWNDKL-NYVAAGFTVVAMDVRGQGGQSQDVGGVTGNT 159 (346)
T ss_dssp EEECGGGCEEEEEEEEESC---SSCEEEEEEECCTTCCS--CCSGGGH-HHHTTTCEEEEECCTTSSSSCCCCCCCSSCC
T ss_pred EEEcCCCCEEEEEEEecCC---CCCcCEEEEECCCCCCC--CChhhhh-HHHhCCcEEEEEcCCCCCCCCCCCcccCCCC
Confidence 5666789999999999973 56789999999987753 3333222 66799999999999996554432211000
Q ss_pred --C--CCCc----------ccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc-hh
Q 003886 645 --G--KVGS----------QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN-LA 709 (789)
Q Consensus 645 --~--~~~~----------~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~-~~ 709 (789)
+ ..+. ..++|+.++++++..+..+|.+||+|+|||+||++++.++.++|+ ++++|+.+|... +.
T Consensus 160 ~~~~~~~g~~~~~~~~~~~~~~~D~~~a~~~l~~~~~~d~~~i~l~G~S~GG~la~~~a~~~p~-v~~~vl~~p~~~~~~ 238 (346)
T 3fcy_A 160 LNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMPEVDEDRVGVMGPSQGGGLSLACAALEPR-VRKVVSEYPFLSDYK 238 (346)
T ss_dssp SBCSSSTTTTSCGGGCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSTT-CCEEEEESCSSCCHH
T ss_pred cCcceeccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCcCcEEEEEcCHHHHHHHHHHHhCcc-ccEEEECCCcccCHH
Confidence 0 0000 125899999999998877899999999999999999999999987 999999999653 33
Q ss_pred hhhcCC-CCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 710 LMVGTT-DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 710 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
...... ....+.....+... ..............+...++...+.++++|+|+++|++|..||++++.+++++++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~~~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~ 315 (346)
T 3fcy_A 239 RVWDLDLAKNAYQEITDYFRL--FDPRHERENEVFTKLGYIDVKNLAKRIKGDVLMCVGLMDQVCPPSTVFAAYNNIQS 315 (346)
T ss_dssp HHHHTTCCCGGGHHHHHHHHH--HCTTCTTHHHHHHHHGGGCHHHHGGGCCSEEEEEEETTCSSSCHHHHHHHHTTCCS
T ss_pred HHhhccccccchHHHHHHHHh--cCCCcchHHHHHHHhCcccHHHHHHhcCCCEEEEeeCCCCcCCHHHHHHHHHhcCC
Confidence 222111 11111100000000 00000111223344445666677889999999999999999999999999998863
|
| >1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll, selenomethionine; 1.90A {Xanthomonas citri} SCOP: b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-19 Score=205.95 Aligned_cols=216 Identities=14% Similarity=0.140 Sum_probs=149.3
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCC----Cc-hhhHH-HH---HHHHHCCcEEEEEcCCCCCCCCc
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV----SL-SSYSK-SL---AFLSSVGYSLLIVNYRGSLGFGE 637 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~----~~-~~~~~-~~---~~la~~Gy~V~~~d~rGs~G~G~ 637 (789)
.++..||..|+++++.|.+ .+++|+||++||.+... .. ..|.. .. ++|+++||+|+.+|+||+++++.
T Consensus 29 ~i~~~DG~~L~~~~~~P~~---~~~~P~vl~~hgyg~~~~~~~~~~~~~~~~~~~~~~~la~~Gy~Vv~~D~RG~g~S~g 105 (615)
T 1mpx_A 29 MIPMRDGVKLHTVIVLPKG---AKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGKYGSEG 105 (615)
T ss_dssp EEECTTSCEEEEEEEEETT---CCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEECTTSTTCCS
T ss_pred EEECCCCCEEEEEEEeCCC---CCCeeEEEEEcCCCCccccccccccccccccchhHHHHHhCCeEEEEECCCCCCCCCC
Confidence 5567799999999999974 36789999999844321 11 12222 12 78999999999999999887766
Q ss_pred hhhccCC-----CCCCcccHHHHHHHHHHHHHc-CCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccch-h-
Q 003886 638 EALQSLP-----GKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-A- 709 (789)
Q Consensus 638 ~~~~~~~-----~~~~~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~-~- 709 (789)
.+....+ +.++..+++|+.++++|+.++ ++.| .||+++|+||||+++++++.+++++++|+|+.+|+.++ .
T Consensus 106 ~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~~-~rv~l~G~S~GG~~al~~a~~~~~~l~a~v~~~~~~d~~~~ 184 (615)
T 1mpx_A 106 DYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESN-GKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGWMG 184 (615)
T ss_dssp CCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTSCCTTEEEEEEESCCCCTTTT
T ss_pred ccccccccccccccccccHHHHHHHHHHHHHhcCCCCC-CeEEEEecCHHHHHHHHHhhcCCCceEEEEecCCccccccc
Confidence 5532211 222237899999999999998 7766 59999999999999999998889999999999999984 3
Q ss_pred hhhcCC---CCC--cchhhhhccCcc--------cc----------------cc-C-CCCChh-------hHHHHHhcCc
Q 003886 710 LMVGTT---DIP--DWCYVESYGSKG--------KD----------------SF-T-ESPSVE-------DLTRFHSKSP 751 (789)
Q Consensus 710 ~~~~~~---~~~--~~~~~~~~~~~~--------~~----------------~~-~-~~~~~~-------~~~~~~~~sp 751 (789)
..+... ... .|.+........ .+ .+ . ..+.++ ..+.|.+.||
T Consensus 185 ~~~~~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~w~~~Sp 264 (615)
T 1mpx_A 185 DDWFNYGAFRQVNFDYFTGQLSKRGKGAGIARQGHDDYSNFLQAGSAGDFAKAAGLEQLPWWHKLTEHAAYDAFWQEQAL 264 (615)
T ss_dssp SSSEETTEEBGGGHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGSHHHHHHHHTCSSCHHHHTTCH
T ss_pred cccccCCeehhhhHHHHHHhhcccCCcccccccchhHHHHHhhcCCccchhhhhccccchHHHHHHhCCCcChhhhhcCh
Confidence 111000 000 011000000000 00 00 0 000000 1144667899
Q ss_pred cccCCC--CCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 752 ISHISK--VKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 752 ~~~~~~--i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
+.++++ |++|+|++||.+|.+ ++.++.++|++|++
T Consensus 265 ~~~~~~~~I~~P~Lii~G~~D~~-~~~~~~~~~~aL~~ 301 (615)
T 1mpx_A 265 DKVMARTPLKVPTMWLQGLWDQE-DMWGAIHSYAAMEP 301 (615)
T ss_dssp HHHHHTSCCCSCEEEEEETTCSS-CSSHHHHHHHHHGG
T ss_pred hhhhhccCCCCCEEEeecccCcc-ccccHHHHHHHHHh
Confidence 999999 999999999999998 88999999999974
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-17 Score=205.53 Aligned_cols=328 Identities=11% Similarity=0.032 Sum_probs=210.6
Q ss_pred ceEEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceeccc-------EEEEeCCCCCeEE
Q 003886 97 KAWTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGA-------SAVVPSPSGSKLL 169 (789)
Q Consensus 97 ~~~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~-------~~~~~SPdG~~la 169 (789)
.....+.+||||++|+|...... ......||++++ .+++.++|+..+ ..+ ..++|||||+ |+
T Consensus 53 ~~v~~~~~SPDG~~la~~s~~~~---~~~~~~i~~~d~--~~g~~~~lt~~~-----~~~~~~~~~~~~~~~SpDg~-ll 121 (1045)
T 1k32_A 53 GVINNARFFPDGRKIAIRVMRGS---SLNTADLYFYNG--ENGEIKRITYFS-----GKSTGRRMFTDVAGFDPDGN-LI 121 (1045)
T ss_dssp SEEEEEEECTTSSEEEEEEEEST---TCCEEEEEEEET--TTTEEEECCCCC-----EEEETTEECSEEEEECTTCC-EE
T ss_pred CcccCeEECCCCCEEEEEEeecc---CCCCCeEEEEEC--CCCCeEEcccCC-----CcccccccccccccCCCCCE-EE
Confidence 34567778999999999865421 124568899886 344566776554 334 7899999998 87
Q ss_pred EEecCCC---CCCeEEEEe-cCCceeEEEecC------------------------------------------------
Q 003886 170 VVRNPEN---ESPIQFELW-SQSQLEKEFHVP------------------------------------------------ 197 (789)
Q Consensus 170 ~~~~~~~---~~~~~~~i~-~~~~~~~~~~~~------------------------------------------------ 197 (789)
|+...+. ...++|.+. .+++..+++...
T Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~ 201 (1045)
T 1k32_A 122 ISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVD 201 (1045)
T ss_dssp EEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEEC
T ss_pred EEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcC
Confidence 8775431 234566665 333322211100
Q ss_pred -----------C-------Cccc--ccc---CC----------CcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCC
Q 003886 198 -----------Q-------TVHG--SVY---AD----------GWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG 244 (789)
Q Consensus 198 -----------~-------~~~g--~v~---~d----------~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~ 244 (789)
. ...+ .+| .+ ..+..++|||||++|+|..... ...|+......
T Consensus 202 ~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~---i~~~d~~~~~l- 277 (1045)
T 1k32_A 202 MSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGS---IYIFNPDTEKI- 277 (1045)
T ss_dssp CSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTE---EEEECTTTCCE-
T ss_pred CCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCE---EEEecCCceEe-
Confidence 0 0000 111 00 1134678999999999974221 11111100000
Q ss_pred CCCc-----------CCCCCCCcceee-CCcccccCCccCceEEEEEccCCceEeccCCCCCC-ccceEEEeeCCCCCcc
Q 003886 245 SSDK-----------DCNSWKGQGDWE-EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL-SVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 245 ~~~~-----------~~~~~~~~~~~~-~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~-~~~~~~wSPDg~~~~~ 311 (789)
.... .+........|+ ||...... .....|+++++.+++.+.+ ..... .+..++|+ ||+.
T Consensus 278 ~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~-~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~s-dg~~--- 350 (1045)
T 1k32_A 278 EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF-VSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGD-TKVA--- 350 (1045)
T ss_dssp EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE-EETTEEEEECTTSSBEEEC--SCCSCEEEEEECSS-SEEE---
T ss_pred eeeccCcccccccccccccccceeeecCCCCCEEEE-EEcCEEEEEcCCCCceEEc--cCCCcceEEeeeEc-CCCe---
Confidence 0000 011234456788 88543333 3367899999999988877 33333 67789999 9999
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceE-EEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEe
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALY-AVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s 390 (789)
|+|.+. ...|| ++++ .+++.+.|+.+...+..++|||||++|++.+
T Consensus 351 -l~~~s~---------------~~~l~~~~d~-----------------~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~ 397 (1045)
T 1k32_A 351 -FIHGTR---------------EGDFLGIYDY-----------------RTGKAEKFEENLGNVFAMGVDRNGKFAVVAN 397 (1045)
T ss_dssp -EEEEET---------------TEEEEEEEET-----------------TTCCEEECCCCCCSEEEEEECTTSSEEEEEE
T ss_pred -EEEEEC---------------CCceEEEEEC-----------------CCCCceEecCCccceeeeEECCCCCEEEEEC
Confidence 998873 23799 8998 6777888885556788999999999999887
Q ss_pred cCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeC-----
Q 003886 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG----- 465 (789)
Q Consensus 391 ~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~----- 465 (789)
.+. .|++||+.++..+.+.... ...+..+.|||||++|++.+...
T Consensus 398 ~~~-----------~v~~~d~~tg~~~~~~~~~-------------------~~~v~~~~~SpDG~~la~~~~~~~~~~~ 447 (1045)
T 1k32_A 398 DRF-----------EIMTVDLETGKPTVIERSR-------------------EAMITDFTISDNSRFIAYGFPLKHGETD 447 (1045)
T ss_dssp TTS-----------EEEEEETTTCCEEEEEECS-------------------SSCCCCEEECTTSCEEEEEEEECSSTTC
T ss_pred CCC-----------eEEEEECCCCceEEeccCC-------------------CCCccceEECCCCCeEEEEecCcccccc
Confidence 543 6999999886653222110 01235778999999998877653
Q ss_pred --CeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCC
Q 003886 466 --SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 466 --~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~ 509 (789)
....|+.+|+.+++...++..........|++||+.|++.....
T Consensus 448 ~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~ 493 (1045)
T 1k32_A 448 GYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRS 493 (1045)
T ss_dssp SCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred CCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEeccc
Confidence 45689999999999888877655445568999999998877543
|
| >3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga maritima} PDB: 3doi_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.6e-19 Score=191.39 Aligned_cols=177 Identities=15% Similarity=0.135 Sum_probs=140.6
Q ss_pred eeecC-CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH----------HHHHHHHCCcEEEEEcCCCCCCC
Q 003886 567 NLTKG-AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK----------SLAFLSSVGYSLLIVNYRGSLGF 635 (789)
Q Consensus 567 ~~~~~-~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~----------~~~~la~~Gy~V~~~d~rGs~G~ 635 (789)
.+.+. +|..+.++++.|+++++.+++|+||++||+++......... ...+....|+.|+++|++|..++
T Consensus 148 ~~~~~~dg~~l~~~v~~P~~~~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~vv~pd~~g~~~~ 227 (380)
T 3doh_A 148 TFKDPETGVEIPYRLFVPKDVNPDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSW 227 (380)
T ss_dssp EEECTTTCCEEEEEEECCSSCCTTSCEEEEEEECCGGGCSSSSSHHHHSSTTTTGGGSHHHHTTSCCEEEEECCCTTCCS
T ss_pred eeccCCCCcEEEEEEEcCCCCCCCCCccEEEEECCCCCCCCchhhhhhccccceeecCccccccCCEEEEEecCCCCCcc
Confidence 55667 89999999999998777889999999999876532211111 12234567899999999998888
Q ss_pred CchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCC
Q 003886 636 GEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT 715 (789)
Q Consensus 636 G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~ 715 (789)
|..+........+..+.+|+.+++++++++..+|++||+|+|||+||++++.++.++|++|+++|+.+|..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~d~~~~i~~~~~~~~~d~~ri~l~G~S~GG~~a~~~a~~~p~~~~~~v~~sg~~~~------- 300 (380)
T 3doh_A 228 STLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGDV------- 300 (380)
T ss_dssp BTTTTCSSCTTSBCHHHHHHHHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCG-------
T ss_pred cccccccccccCCcchHHHHHHHHHHHHHhcCCCcCcEEEEEECccHHHHHHHHHhCCccceEEEEecCCCCh-------
Confidence 8776543334444667899999999999987789999999999999999999999999999999999987521
Q ss_pred CCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCC-CCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 716 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
..+.++ .+|+|++||++|..||++++.+++++|++
T Consensus 301 -------------------------------------~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~ 336 (380)
T 3doh_A 301 -------------------------------------SKVERIKDIPIWVFHAEDDPVVPVENSRVLVKKLAE 336 (380)
T ss_dssp -------------------------------------GGGGGGTTSCEEEEEETTCSSSCTHHHHHHHHHHHH
T ss_pred -------------------------------------hhhhhccCCCEEEEecCCCCccCHHHHHHHHHHHHH
Confidence 112223 37999999999999999999999998863
|
| >1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha sandwich, PSI, protein structure initiative; 1.50A {Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A 3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-18 Score=182.63 Aligned_cols=210 Identities=19% Similarity=0.213 Sum_probs=141.5
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCC--
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP-- 644 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~-- 644 (789)
.+...+|..+.++++.|++ .++.|+||++||++++ ....+. ....|+++||.|+++|+||.++..........
T Consensus 60 ~~~~~~g~~i~~~~~~P~~---~~~~p~vv~~HG~~~~-~~~~~~-~~~~l~~~g~~v~~~d~rg~g~s~~~~~~~~~~~ 134 (318)
T 1l7a_A 60 TYKSFGNARITGWYAVPDK---EGPHPAIVKYHGYNAS-YDGEIH-EMVNWALHGYATFGMLVRGQQRSEDTSISPHGHA 134 (318)
T ss_dssp EEEEGGGEEEEEEEEEESS---CSCEEEEEEECCTTCC-SGGGHH-HHHHHHHTTCEEEEECCTTTSSSCCCCCCSSCCS
T ss_pred EEEccCCCEEEEEEEeeCC---CCCccEEEEEcCCCCC-CCCCcc-cccchhhCCcEEEEecCCCCCCCCCcccccCCcc
Confidence 4555678899999999973 5678999999998764 123333 33478889999999999996554433210000
Q ss_pred -C--CCC---------cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc-chhhh
Q 003886 645 -G--KVG---------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC-NLALM 711 (789)
Q Consensus 645 -~--~~~---------~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~-~~~~~ 711 (789)
+ ..+ ...++|+.++++++.++..+|.++|+|+|||+||.+++.++.++|+ ++++|+.+|.. ++...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~~-~~~~v~~~p~~~~~~~~ 213 (318)
T 1l7a_A 135 LGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAVADYPYLSNFERA 213 (318)
T ss_dssp SSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCSC-CSEEEEESCCSCCHHHH
T ss_pred ccceeccCCCHHHHHHHHHHHHHHHHHHHHHhCCCcccceeEEEecChHHHHHHHHhccCCC-ccEEEecCCcccCHHHH
Confidence 0 011 1237899999999999877889999999999999999999999875 77888888864 33332
Q ss_pred hcCCCCCcchhhhhccCccccccCCCC--ChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 712 VGTTDIPDWCYVESYGSKGKDSFTESP--SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
........+.....+.. .. ..+ ...........++...+.++++|+|++||++|..+|++++.++++.++.
T Consensus 214 ~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~g~~D~~~~~~~~~~~~~~l~~ 286 (318)
T 1l7a_A 214 IDVALEQPYLEINSFFR----RN-GSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYNHLET 286 (318)
T ss_dssp HHHCCSTTTTHHHHHHH----HS-CCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHHCCS
T ss_pred HhcCCcCccHHHHHHHh----cc-CCcccHHHHHHhhccccHHHHHhhCCCCEEEEeccCCCCCCcccHHHHHhhcCC
Confidence 21111111111000000 00 000 0011222333456667888999999999999999999999999999875
|
| >3trd_A Alpha/beta hydrolase; cellular processes; 1.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.9e-18 Score=166.90 Aligned_cols=166 Identities=15% Similarity=0.214 Sum_probs=129.1
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCC---CCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP---HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 643 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~---~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~ 643 (789)
.+...+| +++++++.|. ..++.|+||++||++ +......|......|+++||.|+++|+||. |.+...
T Consensus 10 ~~~~~~g-~l~~~~~~p~---~~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~---g~s~~~-- 80 (208)
T 3trd_A 10 LIQGPVG-QLEVMITRPK---GIEKSVTGIICHPHPLHGGTMNNKVVTTLAKALDELGLKTVRFNFRGV---GKSQGR-- 80 (208)
T ss_dssp EEECSSS-EEEEEEECCS---SCCCSEEEEEECSCGGGTCCTTCHHHHHHHHHHHHTTCEEEEECCTTS---TTCCSC--
T ss_pred EEECCCc-eEEEEEEcCC---CCCCCCEEEEEcCCCCCCCccCCchHHHHHHHHHHCCCEEEEEecCCC---CCCCCC--
Confidence 4566678 9999999986 345789999999953 332344566677899999999999999984 333211
Q ss_pred CCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhh
Q 003886 644 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV 723 (789)
Q Consensus 644 ~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~ 723 (789)
........+|+.++++++.++ .+.++++++|||+||.+++.++ ++| +++++|+.+|..+. +
T Consensus 81 -~~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a-~~~-~v~~~v~~~~~~~~-----------~--- 141 (208)
T 3trd_A 81 -YDNGVGEVEDLKAVLRWVEHH--WSQDDIWLAGFSFGAYISAKVA-YDQ-KVAQLISVAPPVFY-----------E--- 141 (208)
T ss_dssp -CCTTTHHHHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHH-HHS-CCSEEEEESCCTTS-----------G---
T ss_pred -ccchHHHHHHHHHHHHHHHHh--CCCCeEEEEEeCHHHHHHHHHh-ccC-CccEEEEecccccc-----------C---
Confidence 122344588999999999987 5668999999999999999999 667 89999999887510 0
Q ss_pred hhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 724 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
....+..+++|+|++||++|..+|++++.++++++++
T Consensus 142 ---------------------------~~~~~~~~~~p~l~i~g~~D~~~~~~~~~~~~~~~~~ 178 (208)
T 3trd_A 142 ---------------------------GFASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQISS 178 (208)
T ss_dssp ---------------------------GGTTCCSCCSCEEEEEETTCSSSCHHHHHHHHHHSSS
T ss_pred ---------------------------CchhhhhcCCCEEEEECCCCCCCCHHHHHHHHHHccC
Confidence 0123455689999999999999999999999999876
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=189.41 Aligned_cols=261 Identities=16% Similarity=0.121 Sum_probs=169.8
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
...|+|||||++|||+...+ +..+++.++ .+++..+++...... ...+.|||||++|+|++.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~-g~~~l~~~d~~~~~~~~l~~~~~~~---------~~~~~~spdg~~l~~~~~~------ 101 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFD-GNRNYYLLNLETQQAVQLTEGKGDN---------TFGGFISTDERAFFYVKNE------ 101 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTT-SSCEEEEEETTTTEEEECCCSSCBC---------TTTCEECTTSSEEEEEETT------
T ss_pred eecCcCCCCCCEEEEEEecC-CCceEEEEECCCCcEEEeecCCCCc---------cccceECCCCCEEEEEEcC------
Confidence 56789999999999998764 555788777 555555443322111 1348899999999998542
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~ 314 (789)
..|+++|+++++.+.+. .... .|+|||+. |+
T Consensus 102 --------------------------------------~~l~~~d~~~~~~~~~~--~~~~-----~~~~~g~~----l~ 132 (396)
T 3c5m_A 102 --------------------------------------LNLMKVDLETLEEQVIY--TVDE-----EWKGYGTW----VA 132 (396)
T ss_dssp --------------------------------------TEEEEEETTTCCEEEEE--ECCT-----TEEEEEEE----EE
T ss_pred --------------------------------------CcEEEEECCCCCcEEEE--eccc-----ccCCCCCE----EE
Confidence 36999999999887773 2111 17777776 66
Q ss_pred EEeec-------------CCceeeeeee--eccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCccee
Q 003886 315 FVGWS-------------SETRKLGIKY--CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRF 379 (789)
Q Consensus 315 f~~~~-------------~~~~~~g~~~--~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~ 379 (789)
|.... .+.+...... .......||++|+ .+++.+.++........+.|
T Consensus 133 ~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~-----------------~~g~~~~~~~~~~~~~~~~~ 195 (396)
T 3c5m_A 133 NSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDI-----------------ETGELEVIHQDTAWLGHPIY 195 (396)
T ss_dssp CTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEET-----------------TTCCEEEEEEESSCEEEEEE
T ss_pred eccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEEC-----------------CCCcEEeeccCCcccccceE
Confidence 64321 1100000000 0023457999998 67777777766666788999
Q ss_pred cC-CCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEE
Q 003886 380 SP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 458 (789)
Q Consensus 380 Sp-DG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l 458 (789)
|| ||++|+|.+.... .....+|+++|+.++..+.++..... ..+..+.|+|||+.|
T Consensus 196 sp~dg~~l~~~~~~~~-----~~~~~~l~~~d~~~~~~~~l~~~~~~------------------~~~~~~~~spdg~~l 252 (396)
T 3c5m_A 196 RPFDDSTVGFCHEGPH-----DLVDARMWLVNEDGSNVRKIKEHAEG------------------ESCTHEFWIPDGSAM 252 (396)
T ss_dssp ETTEEEEEEEEECSCS-----SSCSCCCEEEETTSCCCEESSCCCTT------------------EEEEEEEECTTSSCE
T ss_pred CCCCCCEEEEEecCCC-----CCCCceEEEEECCCCceeEeeccCCC------------------ccccceEECCCCCEE
Confidence 99 8999999985321 11125799999877654433321000 012346899999999
Q ss_pred EEEEEeCCe--EEEEEEECCCCcEEEecCCCCCceeEEeee-cCCEEEEEEeC------------CCCCCeEEEEeeccc
Q 003886 459 LLSSIWGSS--QVIISVNVSSGELLRITPAESNFSWSLLTL-DGDNIIAVSSS------------PVDVPQVKYGYFVDK 523 (789)
Q Consensus 459 ~~~~~~~~~--~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~-dg~~l~~~~ss------------~~~p~~i~~~~~~~~ 523 (789)
++.+...+. ..|+.+|+.+|+.++++.... .. ..+++ ||+.+++..+. ......|++.++.++
T Consensus 253 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 253 AYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp EEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred EEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 988877655 449999999999888865443 23 78899 99966664432 012267888887654
|
| >3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.4e-19 Score=177.20 Aligned_cols=179 Identities=15% Similarity=0.124 Sum_probs=132.7
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhc------
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ------ 641 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~------ 641 (789)
+.. +|..+.++++.|.+ ..++.|+||++||..+. ...+....+.|+++||.|+++|++|.+|.......
T Consensus 11 ~~~-~~~~~~~~~~~p~~--~~~~~p~vv~~HG~~g~--~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~~~~~~~~~~~~ 85 (241)
T 3f67_A 11 IPS-QGENMPAYHARPKN--ADGPLPIVIVVQEIFGV--HEHIRDLCRRLAQEGYLAIAPELYFRQGDPNEYHDIPTLFK 85 (241)
T ss_dssp EEE-TTEEEEEEEEEETT--CCSCEEEEEEECCTTCS--CHHHHHHHHHHHHTTCEEEEECTTTTTCCGGGCCSHHHHHH
T ss_pred Eec-CCcceEEEEecCCC--CCCCCCEEEEEcCcCcc--CHHHHHHHHHHHHCCcEEEEecccccCCCCCchhhHHHHHH
Confidence 344 78899999999974 33578999999996553 45677778899999999999999985544322110
Q ss_pred -cCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcc
Q 003886 642 -SLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDW 720 (789)
Q Consensus 642 -~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~ 720 (789)
...........+|+.++++++.+++ +|.++|+|+|||+||.+++.++.++|+ ++++|+..+..... .
T Consensus 86 ~~~~~~~~~~~~~d~~~~~~~l~~~~-~d~~~i~l~G~S~Gg~~a~~~a~~~~~-~~~~v~~~~~~~~~-------~--- 153 (241)
T 3f67_A 86 ELVSKVPDAQVLADLDHVASWAARHG-GDAHRLLITGFCWGGRITWLYAAHNPQ-LKAAVAWYGKLVGE-------K--- 153 (241)
T ss_dssp HTGGGSCHHHHHHHHHHHHHHHHTTT-EEEEEEEEEEETHHHHHHHHHHTTCTT-CCEEEEESCCCSCC-------C---
T ss_pred HhhhcCCchhhHHHHHHHHHHHHhcc-CCCCeEEEEEEcccHHHHHHHHhhCcC-cceEEEEeccccCC-------C---
Confidence 0000111234789999999999887 888999999999999999999999887 77777765542100 0
Q ss_pred hhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 721 CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
..+...+|...+.++++|+|++||++|..+|++++.++++.++
T Consensus 154 -----------------------~~~~~~~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~ 196 (241)
T 3f67_A 154 -----------------------SLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETMRQALR 196 (241)
T ss_dssp -----------------------CSSSCCCHHHHGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHH
T ss_pred -----------------------ccCCccCHHHhhhhcCCCEEEEEecCCCCCCHHHHHHHHHHHH
Confidence 0011234455677889999999999999999999999999874
|
| >3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.2e-18 Score=175.99 Aligned_cols=188 Identities=17% Similarity=0.189 Sum_probs=137.0
Q ss_pred CCCeeEEEEEEecCC---CCCCCCCcEEEEEcCCCCCC-CchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 571 GAQKPFEAIFVSSSH---KKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~---~~~~~~~P~vv~~HGg~~~~-~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
.+|..+.+.++.|+. +...++.|+||++|||++.. ....|......|+++||.|+++|+||.+..+.
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~g~~~~--------- 81 (277)
T 3bxp_A 11 TAAHPFQITAYWLDQISDFETAVDYPIMIICPGGGFTYHSGREEAPIATRMMAAGMHTVVLNYQLIVGDQS--------- 81 (277)
T ss_dssp STTCCEEEEEEEECCCCSSSCCCCEEEEEEECCSTTTSCCCTTHHHHHHHHHHTTCEEEEEECCCSTTTCC---------
T ss_pred cCCCcceEEEEeCCcccccccCCCccEEEEECCCccccCCCccchHHHHHHHHCCCEEEEEecccCCCCCc---------
Confidence 356778888998872 23456789999999976432 33456677888999999999999998431111
Q ss_pred CCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhC--------------CCceeEEEEeCCccchh
Q 003886 647 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--------------PDKFVAAAARNPLCNLA 709 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~--------------p~~~~a~v~~~pv~~~~ 709 (789)
.....++|+.++++++.++. .+|.++|+|+|||+||++++.++.++ +.+++++|+.+|..++.
T Consensus 82 ~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~~ 161 (277)
T 3bxp_A 82 VYPWALQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHYQGQHAAIILGYPVIDLT 161 (277)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTSHHHHHHTTCTTCCCCCSEEEEESCCCBTT
T ss_pred cCchHHHHHHHHHHHHHhhhhhcCCChhheEEEEeCHHHHHHHHHHhhccCcccccccCcccccCCcCEEEEeCCcccCC
Confidence 11245789999999998762 26788999999999999999999885 67899999999987643
Q ss_pred hhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 710 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
..+.. ...+... +.. .+...+|...+.++.+|+|++||++|..||++++.++++.|++
T Consensus 162 ~~~~~----~~~~~~~--------~~~--------~~~~~~~~~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~ 219 (277)
T 3bxp_A 162 AGFPT----TSAARNQ--------ITT--------DARLWAAQRLVTPASKPAFVWQTATDESVPPINSLKYVQAMLQ 219 (277)
T ss_dssp SSSSS----SHHHHHH--------HCS--------CGGGSBGGGGCCTTSCCEEEEECTTCCCSCTHHHHHHHHHHHH
T ss_pred CCCCC----ccccchh--------ccc--------hhhhcCHhhccccCCCCEEEEeeCCCCccChHHHHHHHHHHHH
Confidence 21100 0000000 000 1234567777888899999999999999999999999988753
|
| >3bjr_A Putative carboxylesterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.09A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=180.04 Aligned_cols=190 Identities=16% Similarity=0.159 Sum_probs=134.9
Q ss_pred eecCCCeeEEEEEEecCCC---CCCCCCcEEEEEcCCCCC-CCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccC
Q 003886 568 LTKGAQKPFEAIFVSSSHK---KDCSCDPLIVVLHGGPHS-VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 643 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~---~~~~~~P~vv~~HGg~~~-~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~ 643 (789)
+...+|..+...+| |+.. ...++.|+||++|||++. .....|......|+++||.|+++|+||.+..+
T Consensus 24 ~~~~~g~~~~~~~y-p~~~~~~~~~~~~p~vv~lHGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~~~~~------- 95 (283)
T 3bjr_A 24 KQKLTATCAQLTGY-LHQPDTNAHQTNLPAIIIVPGGSYTHIPVAQAESLAMAFAGHGYQAFYLEYTLLTDQQ------- 95 (283)
T ss_dssp EEECTTSSCEEEEE-EC--------CCEEEEEEECCSTTTCCCHHHHHHHHHHHHTTTCEEEEEECCCTTTCS-------
T ss_pred EeecCCCceeEEEe-cCCccccccCCCCcEEEEECCCccccCCccccHHHHHHHHhCCcEEEEEeccCCCccc-------
Confidence 34445655666677 6531 145678999999997743 23345667788899999999999999854432
Q ss_pred CCCCCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhCCCc-------------eeEEEEeCCccc
Q 003886 644 PGKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPDK-------------FVAAAARNPLCN 707 (789)
Q Consensus 644 ~~~~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~p~~-------------~~a~v~~~pv~~ 707 (789)
........|+.++++++.+.. .+|.++|+|+|||+||++++.++.++|++ ++++|+.+|..+
T Consensus 96 --~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~ 173 (283)
T 3bjr_A 96 --PLGLAPVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGGHIVALYNDYWATRVATELNVTPAMLKPNNVVLGYPVIS 173 (283)
T ss_dssp --SCBTHHHHHHHHHHHHHHHSHHHHTEEEEEEEEEEETHHHHHHHHHHHHTTTHHHHHHTCCHHHHCCSSEEEESCCCC
T ss_pred --cCchhHHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHHHHHHHHHHhhccccchhhcCCCcCCCCccEEEEcCCccc
Confidence 011234788999999998753 36778999999999999999999999987 899999999876
Q ss_pred hhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 708 LALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
+...+.... . ....+.. .+...++...+.++.+|+|++||++|..+|++++.++++.+++
T Consensus 174 ~~~~~~~~~-------~-----~~~~~~~--------~~~~~~~~~~~~~~~~P~lii~G~~D~~~p~~~~~~~~~~l~~ 233 (283)
T 3bjr_A 174 PLLGFPKDD-------A-----TLATWTP--------TPNELAADQHVNSDNQPTFIWTTADDPIVPATNTLAYATALAT 233 (283)
T ss_dssp TTSBC--------------------CCCC--------CGGGGCGGGSCCTTCCCEEEEEESCCTTSCTHHHHHHHHHHHH
T ss_pred ccccccccc-------c-----hHHHHHH--------HhHhcCHHHhccCCCCCEEEEEcCCCCCCChHHHHHHHHHHHH
Confidence 432110000 0 0001111 1234566777888999999999999999999999999998753
|
| >2b9v_A Alpha-amino acid ester hydrolase; catalytic triad, alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus} SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A | Back alignment and structure |
|---|
Probab=99.77 E-value=9.9e-19 Score=202.31 Aligned_cols=214 Identities=12% Similarity=0.142 Sum_probs=148.6
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-----Cc-hhhHHH---H-HHHHHCCcEEEEEcCCCCCCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-----SL-SSYSKS---L-AFLSSVGYSLLIVNYRGSLGFG 636 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~-----~~-~~~~~~---~-~~la~~Gy~V~~~d~rGs~G~G 636 (789)
.++..||..|+++++.|.+ .+++|+||++||..... .. ..|... . ++|+++||+|+.+|+||+++++
T Consensus 41 ~i~~~DG~~L~~~l~~P~~---~~~~PvIl~~hpyg~~~~~~~~~~~~~~~~~~~~~~~~la~~GyaVv~~D~RG~g~S~ 117 (652)
T 2b9v_A 41 MVPMRDGVKLYTVIVIPKN---ARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQDIRGKYGSQ 117 (652)
T ss_dssp EEECTTSCEEEEEEEEETT---CCSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEEECTTSTTCC
T ss_pred EEECCCCcEEEEEEEecCC---CCCccEEEEECCCCCCcccccccccccccccccchHHHHHhCCCEEEEEecCcCCCCC
Confidence 4567799999999999974 36789999999743220 00 112111 2 8899999999999999998887
Q ss_pred chhhccC--CCCCC---cccHHHHHHHHHHHHHc-CCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh
Q 003886 637 EEALQSL--PGKVG---SQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (789)
Q Consensus 637 ~~~~~~~--~~~~~---~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~ 710 (789)
..+.... .+.++ ..+++|+.++++|+.++ ++.| .||+++|+||||++++.++++++++++|+|+.+|+.|+..
T Consensus 118 g~~~~~~~~~~~~~~~g~~~~~D~~~~i~~l~~~~~~~d-~rvgl~G~SyGG~~al~~a~~~~~~lka~v~~~~~~d~~~ 196 (652)
T 2b9v_A 118 GDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESN-GRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVDGWM 196 (652)
T ss_dssp SCCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEE-EEEEEEEEEHHHHHHHHHHTSCCTTEEEEEEEEECCCTTT
T ss_pred CcccccccccccccccccchhhHHHHHHHHHHhcCCCCC-CCEEEEecCHHHHHHHHHHhcCCCceEEEEeccccccccc
Confidence 7654321 11233 47899999999999999 8777 5999999999999999999888999999999999988632
Q ss_pred --hh---cCCCCC--cchhhhhcc-Cc-----------c---c--------------------cccCCCCChhhHHHHHh
Q 003886 711 --MV---GTTDIP--DWCYVESYG-SK-----------G---K--------------------DSFTESPSVEDLTRFHS 748 (789)
Q Consensus 711 --~~---~~~~~~--~~~~~~~~~-~~-----------~---~--------------------~~~~~~~~~~~~~~~~~ 748 (789)
.+ +..... .|....... .. + + ..+...+. ..+.|.+
T Consensus 197 ~d~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~d~yw~~ 274 (652)
T 2b9v_A 197 GDDWFHYGAFRQGAFDYFVSQMTARGGGNDIPRRDADDYTNFLKAGSAGSFATQAGLDQYPFWQRMHAHPA--YDAFWQG 274 (652)
T ss_dssp BSSSEETTEEBTTHHHHHHHHHSSSSCCCCCCCSSSCHHHHHHHHCSHHHHHHHTTGGGCHHHHHHHHCCS--SSHHHHT
T ss_pred ccceecCCchhhhhHHHHHHhhhcccCcccccccchHHHHHHhhcCchhhHHHhhccccchHHHHHHhCCC--CChHHhc
Confidence 11 000010 011000000 00 0 0 00000010 1134567
Q ss_pred cCccccCCC--CCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 749 KSPISHISK--VKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 749 ~sp~~~~~~--i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.||..++++ |++|+|++||.+|.+ +..++.++|++|++
T Consensus 275 ~Sp~~~~~~~~I~~PvLiv~G~~D~~-~~~~~~~~~~aL~~ 314 (652)
T 2b9v_A 275 QALDKILAQRKPTVPMLWEQGLWDQE-DMWGAIHAWQALKD 314 (652)
T ss_dssp TCHHHHHHHHCCCSCEEEEEETTCSS-CSSHHHHHHHHHHH
T ss_pred CChhhhhhcCCCCCCEEEEeecCCcc-ccccHHHHHHHHHh
Confidence 899889999 999999999999998 77899999999873
|
| >2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics, APC5865, hydrolase, PSI-2, protein STRU initiative; HET: MSE; 1.50A {Agrobacterium tumefaciens str} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-17 Score=168.05 Aligned_cols=167 Identities=17% Similarity=0.275 Sum_probs=129.3
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCC---CCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPH---SVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 643 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~---~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~ 643 (789)
.+...+| .+.++++.|. +++.|+||++||.+. ......|......|+++||.|+++|+||. |.+...
T Consensus 27 ~~~~~~g-~l~~~~~~p~----~~~~p~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g~---G~s~~~-- 96 (249)
T 2i3d_A 27 IFNGPAG-RLEGRYQPSK----EKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSI---GRSQGE-- 96 (249)
T ss_dssp EEEETTE-EEEEEEECCS----STTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTS---TTCCSC--
T ss_pred EEECCCc-eEEEEEEcCC----CCCCCEEEEECCCcccCCCccchHHHHHHHHHHHCCCEEEEECCCCC---CCCCCC--
Confidence 4455566 8999999884 357899999999643 21223456677889999999999999984 333211
Q ss_pred CCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhh
Q 003886 644 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV 723 (789)
Q Consensus 644 ~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~ 723 (789)
.......++|+.++++++.++. .+.++++++|||+||++++.++.++|+ ++++|+.+|..+...
T Consensus 97 -~~~~~~~~~d~~~~i~~l~~~~-~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~------------- 160 (249)
T 2i3d_A 97 -FDHGAGELSDAASALDWVQSLH-PDSKSCWVAGYSFGAWIGMQLLMRRPE-IEGFMSIAPQPNTYD------------- 160 (249)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHC-TTCCCEEEEEETHHHHHHHHHHHHCTT-EEEEEEESCCTTTSC-------------
T ss_pred -CCCccchHHHHHHHHHHHHHhC-CCCCeEEEEEECHHHHHHHHHHhcCCC-ccEEEEEcCchhhhh-------------
Confidence 1123345689999999998875 477899999999999999999999998 999999998764200
Q ss_pred hhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 724 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
...+.++++|+|+++|++|..+|++++.++++.++.
T Consensus 161 ----------------------------~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~ 196 (249)
T 2i3d_A 161 ----------------------------FSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKLKT 196 (249)
T ss_dssp ----------------------------CTTCTTCCSCEEEEEETTCSSSCHHHHHHHHHHHTT
T ss_pred ----------------------------hhhhcccCCCEEEEEcCCCCCCCHHHHHHHHHHHhh
Confidence 123557889999999999999999999999998873
|
| >3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine esterase; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-17 Score=176.44 Aligned_cols=208 Identities=16% Similarity=0.139 Sum_probs=139.7
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
.+...+|..+.+.++.|. +.+.|+||++||++.+ ...|......|+++||.|+++|+|| +|.+........
T Consensus 39 ~~~~~dg~~l~~~~~~p~----~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~~~~~~~ 109 (342)
T 3hju_A 39 HLVNADGQYLFCRYWKPT----GTPKALIFVSHGAGEH--SGRYEELARMLMGLDLLVFAHDHVG---HGQSEGERMVVS 109 (342)
T ss_dssp EEECTTSCEEEEEEECCS----SCCSEEEEEECCTTCC--GGGGHHHHHHHHTTTEEEEEECCTT---STTSCSSTTCCS
T ss_pred eEEccCCeEEEEEEeCCC----CCCCcEEEEECCCCcc--cchHHHHHHHHHhCCCeEEEEcCCC---CcCCCCcCCCcC
Confidence 456678999999999885 4567999999997764 4577788889999999999999998 444432211111
Q ss_pred CCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCc--chhhh
Q 003886 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD--WCYVE 724 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~--~~~~~ 724 (789)
.....++|+.++++++..+ .+.++|+|+|||+||++++.++.++|++++++|+.+|........... ... ..+..
T Consensus 110 ~~~~~~~d~~~~l~~l~~~--~~~~~v~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~-~~~~~~~~~~ 186 (342)
T 3hju_A 110 DFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATT-FKVLAAKVLN 186 (342)
T ss_dssp CTHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCSCCTTTTSH-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHh--CCCCcEEEEEeChHHHHHHHHHHhCccccceEEEECcccccchhhhhH-HHHHHHHHHH
Confidence 2223378999999999887 567799999999999999999999999999999999976542110000 000 00000
Q ss_pred hccC-c----cccccCCCCChhhHHHHHh---------------------cCccccCCCCCCCEEEEEeCCCCCCChHHH
Q 003886 725 SYGS-K----GKDSFTESPSVEDLTRFHS---------------------KSPISHISKVKTPTIFLLGAQDLRVPVSNG 778 (789)
Q Consensus 725 ~~~~-~----~~~~~~~~~~~~~~~~~~~---------------------~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~ 778 (789)
.+.. . ....+.. ........+.. .+....+.++++|+|+++|++|..+|++.+
T Consensus 187 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Pvlii~G~~D~~~~~~~~ 265 (342)
T 3hju_A 187 LVLPNLSLGPIDSSVLS-RNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGA 265 (342)
T ss_dssp HHCTTCBCCCCCGGGSC-SCHHHHHHHHTCTTCCCSCCBHHHHHHHHHHHHHHHHHGGGCCSCEEEEEETTCSSSCHHHH
T ss_pred HhccccccCcccccccc-cchHHHHHHhcCcccccccccHHHHHHHHHHHHHHHHHHHhCCcCEEEEEeCCCcccChHHH
Confidence 0000 0 0000000 00111111110 011244778999999999999999999999
Q ss_pred HHHHHHCCC
Q 003886 779 LQVIYHIPF 787 (789)
Q Consensus 779 ~~l~~~l~~ 787 (789)
.++++.++.
T Consensus 266 ~~~~~~~~~ 274 (342)
T 3hju_A 266 YLLMELAKS 274 (342)
T ss_dssp HHHHHHCCC
T ss_pred HHHHHHcCC
Confidence 999999873
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-16 Score=166.59 Aligned_cols=250 Identities=14% Similarity=0.163 Sum_probs=165.8
Q ss_pred EEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCC
Q 003886 99 WTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENES 178 (789)
Q Consensus 99 ~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~ 178 (789)
.....+||||+++++.. ...++++++.+. ++..++.... ....+..++|||||++|++.....++.
T Consensus 44 v~~~~~spdg~~l~~~~----------~~~i~~~d~~~~-~~~~~~~~~~---~~~~~~~~~~spdg~~l~~~~~~~~~~ 109 (297)
T 2ojh_A 44 FEAPNWSPDGKYLLLNS----------EGLLYRLSLAGD-PSPEKVDTGF---ATICNNDHGISPDGALYAISDKVEFGK 109 (297)
T ss_dssp CEEEEECTTSSEEEEEE----------TTEEEEEESSSC-CSCEECCCTT---CCCBCSCCEECTTSSEEEEEECTTTSS
T ss_pred eEeeEECCCCCEEEEEc----------CCeEEEEeCCCC-CCceEecccc---ccccccceEECCCCCEEEEEEeCCCCc
Confidence 33455689999998852 236888876431 3333333221 013466789999999999998655456
Q ss_pred CeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcc
Q 003886 179 PIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 257 (789)
Q Consensus 179 ~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (789)
..+|.+. .+++...+.. .... ..+.|||||++|+|++...
T Consensus 110 ~~l~~~~~~~~~~~~~~~-~~~~----------~~~~~spdg~~l~~~~~~~---------------------------- 150 (297)
T 2ojh_A 110 SAIYLLPSTGGTPRLMTK-NLPS----------YWHGWSPDGKSFTYCGIRD---------------------------- 150 (297)
T ss_dssp CEEEEEETTCCCCEECCS-SSSE----------EEEEECTTSSEEEEEEEET----------------------------
T ss_pred ceEEEEECCCCceEEeec-CCCc----------cceEECCCCCEEEEEECCC----------------------------
Confidence 6788887 4444333222 1112 5789999999999876532
Q ss_pred eeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcce
Q 003886 258 DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 337 (789)
Q Consensus 258 ~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l 337 (789)
+...||.+++.+++.+.+ ......+..+.|+|||+. |++.+... ....|
T Consensus 151 -------------~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l~~~~~~~------------~~~~i 199 (297)
T 2ojh_A 151 -------------QVFDIYSMDIDSGVETRL--THGEGRNDGPDYSPDGRW----IYFNSSRT------------GQMQI 199 (297)
T ss_dssp -------------TEEEEEEEETTTCCEEEC--CCSSSCEEEEEECTTSSE----EEEEECTT------------SSCEE
T ss_pred -------------CceEEEEEECCCCcceEc--ccCCCccccceECCCCCE----EEEEecCC------------CCccE
Confidence 225788888888888877 444556788999999998 88877322 23478
Q ss_pred EEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCC
Q 003886 338 YAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (789)
Q Consensus 338 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~ 417 (789)
|.+++ .++..+.++.+......+.|||||++|++.+.+......+.....+|+++|+.+++..
T Consensus 200 ~~~~~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 262 (297)
T 2ojh_A 200 WRVRV-----------------DGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE 262 (297)
T ss_dssp EEEET-----------------TSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE
T ss_pred EEECC-----------------CCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce
Confidence 88887 6677788887777778899999999999998764211000012357999999876543
Q ss_pred CcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCC
Q 003886 418 SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (789)
Q Consensus 418 ~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (789)
.+. .+... ...+..+.|+|||+.|++.+...+
T Consensus 263 ~~~-------~~~~~----------~~~~~~~~~spdg~~l~~~~~~~~ 294 (297)
T 2ojh_A 263 TLF-------DLFGG----------QGTMNSPNWSPDGDEFAYVRYFPV 294 (297)
T ss_dssp EEE-------EEEES----------TTTSCSCCBCTTSSEEEEEEECCC
T ss_pred eee-------ccCCC----------CcccccceECCCCCEEEEEEeccC
Confidence 221 11000 013457889999999988876543
|
| >3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold, 2-arachidonyl-glycerol, M associated, hydrolase, hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A {Homo sapiens} PDB: 3jw8_A 3jwe_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-17 Score=169.86 Aligned_cols=208 Identities=17% Similarity=0.147 Sum_probs=137.5
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
.+...+|..++++++.|. +++.|+||++||.+.+ ...|......|+++||.|+++|+|| +|.+........
T Consensus 21 ~~~~~~g~~l~~~~~~~~----~~~~~~vv~~hG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G---~G~s~~~~~~~~ 91 (303)
T 3pe6_A 21 HLVNADGQYLFCRYWAPT----GTPKALIFVSHGAGEH--SGRYEELARMLMGLDLLVFAHDHVG---HGQSEGERMVVS 91 (303)
T ss_dssp EEECTTSCEEEEEEECCS----SCCSEEEEEECCTTCC--GGGGHHHHHHHHHTTEEEEEECCTT---STTSCSSTTCCS
T ss_pred eEecCCCeEEEEEEeccC----CCCCeEEEEECCCCch--hhHHHHHHHHHHhCCCcEEEeCCCC---CCCCCCCCCCCC
Confidence 456678999999999875 4568999999997664 5578888889999999999999998 444432211111
Q ss_pred CCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCC-cchhhhh
Q 003886 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP-DWCYVES 725 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~-~~~~~~~ 725 (789)
.....++|+.++++++..+ .+..+++++|||+||.+++.++.++|++++++|+.+|.............. .......
T Consensus 92 ~~~~~~~d~~~~l~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (303)
T 3pe6_A 92 DFHVFVRDVLQHVDSMQKD--YPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLAAKVLNS 169 (303)
T ss_dssp STHHHHHHHHHHHHHHHHH--STTCCEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCSSSBCHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhc--cCCceEEEEEeCHHHHHHHHHHHhCcccccEEEEECccccCchhccHHHHHHHHHHHHH
Confidence 1223368888899988877 456799999999999999999999999999999999976542110000000 0000000
Q ss_pred ccC----c-cccccCCCCChhhHHHHHh---------------------cCccccCCCCCCCEEEEEeCCCCCCChHHHH
Q 003886 726 YGS----K-GKDSFTESPSVEDLTRFHS---------------------KSPISHISKVKTPTIFLLGAQDLRVPVSNGL 779 (789)
Q Consensus 726 ~~~----~-~~~~~~~~~~~~~~~~~~~---------------------~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~ 779 (789)
+.. . ...... .........+.. ......+.++++|+|+++|++|..+|++.+.
T Consensus 170 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~ 248 (303)
T 3pe6_A 170 VLPNLSSGPIDSSVL-SRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAY 248 (303)
T ss_dssp TCCSCCCCCCCGGGT-CSCHHHHHHHHTCTTSCCSCCCHHHHHHHHHHHHHHHHHGGGCCSCEEEEEETTCSSBCHHHHH
T ss_pred hcccccCCccchhhh-hcchhHHHHhccCccccccchhhhhHHHHHHHHHHHHHHhhcCCCCEEEEeeCCCCCCChHHHH
Confidence 000 0 000000 000011111110 0112346788999999999999999999999
Q ss_pred HHHHHCC
Q 003886 780 QVIYHIP 786 (789)
Q Consensus 780 ~l~~~l~ 786 (789)
++++.++
T Consensus 249 ~~~~~~~ 255 (303)
T 3pe6_A 249 LLMELAK 255 (303)
T ss_dssp HHHHHCC
T ss_pred HHHHhcc
Confidence 9999986
|
| >2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold, structural genomics, joint cente structural genomics, JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=7.5e-18 Score=173.25 Aligned_cols=178 Identities=15% Similarity=0.184 Sum_probs=134.3
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCC-CCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS-VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~-~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
++..+...++.|.+ ++.|+||++|||++. .....|......|+++||.|+++|+||++.+. ...
T Consensus 47 ~~~~~~~~~~~p~~----~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~~~~~~~~-----------~~~ 111 (262)
T 2pbl_A 47 EGDRHKFDLFLPEG----TPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVR-----------ISE 111 (262)
T ss_dssp SSTTCEEEEECCSS----SCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTSC-----------HHH
T ss_pred CCCCceEEEEccCC----CCCCEEEEEcCcccccCChHHHHHHHHHHHhCCCEEEEeCCCCCCCCC-----------hHH
Confidence 34445566777862 678999999997632 34456666778899999999999999854321 122
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC------CCceeEEEEeCCccchhhhhcCCCCCcchhhh
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 724 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~------p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~ 724 (789)
..+|+.++++++..+.. ++++|+|||+||++++.++.++ +++++++|+.+|+.++..+.... ...
T Consensus 112 ~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~v~~~vl~~~~~~~~~~~~~~------~~~ 182 (262)
T 2pbl_A 112 ITQQISQAVTAAAKEID---GPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRTS------MNE 182 (262)
T ss_dssp HHHHHHHHHHHHHHHSC---SCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGST------THH
T ss_pred HHHHHHHHHHHHHHhcc---CCEEEEEECHHHHHHHHHhccccccccccccceEEEEecCccCchHHHhhh------hhh
Confidence 37899999999988742 7899999999999999999887 88999999999988754332110 000
Q ss_pred hccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 725 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
.+ . .....+...+|...+.++++|+|++||++|..||++++.++++.++
T Consensus 183 ~~---------~----~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~ 231 (262)
T 2pbl_A 183 KF---------K----MDADAAIAESPVEMQNRYDAKVTVWVGGAERPAFLDQAIWLVEAWD 231 (262)
T ss_dssp HH---------C----CCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHHHHHHHHHHHHHT
T ss_pred hh---------C----CCHHHHHhcCcccccCCCCCCEEEEEeCCCCcccHHHHHHHHHHhC
Confidence 00 0 1123455678888888999999999999999999999999998864
|
| >2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural genomics, PSI, structure initiative; 2.00A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.9e-17 Score=175.29 Aligned_cols=210 Identities=13% Similarity=0.074 Sum_probs=140.8
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH-HHHHHHHCCcEEEEEcCCCCCCCCchhhccCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK-SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 645 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~-~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~ 645 (789)
.+.+.||..+.++++.|.+ .+.++.|+||++||+++. ...|.. ....|+++||.|+++|+||.+ .+.......
T Consensus 72 ~~~~~~g~~~~~~~~~p~~-~~~~~~p~vv~~hG~~~~--~~~~~~~~~~~l~~~G~~v~~~d~~g~g---~s~~~~~~~ 145 (367)
T 2hdw_A 72 TFANRYGITLAADLYLPKN-RGGDRLPAIVIGGPFGAV--KEQSSGLYAQTMAERGFVTLAFDPSYTG---ESGGQPRNV 145 (367)
T ss_dssp EEECTTSCEEEEEEEEESS-CCSSCEEEEEEECCTTCC--TTSHHHHHHHHHHHTTCEEEEECCTTST---TSCCSSSSC
T ss_pred EEecCCCCEEEEEEEeCCC-CCCCCCCEEEEECCCCCc--chhhHHHHHHHHHHCCCEEEEECCCCcC---CCCCcCccc
Confidence 4566788999999999975 235678999999997764 344443 677899999999999999843 322111111
Q ss_pred CCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhh-cCCC--------
Q 003886 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV-GTTD-------- 716 (789)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~-~~~~-------- 716 (789)
......++|+.++++++.++..+|.++|+|+|||+||++++.++.++| +++++|+.+|+....... +...
T Consensus 146 ~~~~~~~~d~~~~~~~l~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~p-~~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~ 224 (367)
T 2hdw_A 146 ASPDINTEDFSAAVDFISLLPEVNRERIGVIGICGWGGMALNAVAVDK-RVKAVVTSTMYDMTRVMSKGYNDSVTLEQRT 224 (367)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCCCHHHHHHHTTTTCCCHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhCcCCCcCcEEEEEECHHHHHHHHHHhcCC-CccEEEEeccccccHHHhhhhccccchHHHH
Confidence 112345789999999999988788899999999999999999999988 699999999863211100 0000
Q ss_pred ------------------------CC---c---c---hhhhhccCc-c-ccc---cCCCCChhhHHHHHhcCccccCCCC
Q 003886 717 ------------------------IP---D---W---CYVESYGSK-G-KDS---FTESPSVEDLTRFHSKSPISHISKV 758 (789)
Q Consensus 717 ------------------------~~---~---~---~~~~~~~~~-~-~~~---~~~~~~~~~~~~~~~~sp~~~~~~i 758 (789)
.+ . . .....+... . ... ............+...++...+.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 304 (367)
T 2hdw_A 225 RTLEQLGQQRWKDAESGTPAYQPPYNELKGGEAQFLVDYHDYYMTPRGYHPRAVNSGNAWTMTTPLSFMNMPILTYIKEI 304 (367)
T ss_dssp HHHHHHHHHHHHHHHHTSCCBCSCTTCCCSCCCHHHHHHHHHHTSTTTCCTTCSTTTCCCBTTTHHHHTTSCSCTTGGGG
T ss_pred HHHHHHHHHHHHHhccCCceeecCCCccccccccccCCccceeecccccCcccccccchhhhhhHHHhcCCChhHhHHhh
Confidence 00 0 0 000000000 0 000 0000001224455566777788899
Q ss_pred C-CCEEEEEeCCCCCCChHHHHHHHHHC
Q 003886 759 K-TPTIFLLGAQDLRVPVSNGLQVIYHI 785 (789)
Q Consensus 759 ~-~P~Lii~G~~D~~vp~~~~~~l~~~l 785 (789)
+ +|+|++||++|. ++.++.++++..
T Consensus 305 ~~~PvLii~G~~D~--~~~~~~~~~~~~ 330 (367)
T 2hdw_A 305 SPRPILLIHGERAH--SRYFSETAYAAA 330 (367)
T ss_dssp TTSCEEEEEETTCT--THHHHHHHHHHS
T ss_pred cCCceEEEecCCCC--CHHHHHHHHHhC
Confidence 9 999999999999 889999998863
|
| >1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D structure, serine esterase, HYD aromatic hydrocarbons, catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A* 1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A 1ggv_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.5e-18 Score=169.17 Aligned_cols=171 Identities=19% Similarity=0.189 Sum_probs=128.9
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhcc----
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQS---- 642 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~---- 642 (789)
.+...+|..+.++++.|. +++.|+||++||.++. ...|......|+++||.|+++|+||.+..+......
T Consensus 7 ~~~~~~g~~l~~~~~~p~----~~~~p~vv~~hG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~g~g~s~~~~~~~~~~~ 80 (236)
T 1zi8_A 7 SIQSYDGHTFGALVGSPA----KAPAPVIVIAQDIFGV--NAFMRETVSWLVDQGYAAVCPDLYARQAPGTALDPQDERQ 80 (236)
T ss_dssp CEECTTSCEECEEEECCS----SCSEEEEEEECCTTBS--CHHHHHHHHHHHHTTCEEEEECGGGGTSTTCBCCTTCHHH
T ss_pred EEecCCCCeEEEEEECCC----CCCCCEEEEEcCCCCC--CHHHHHHHHHHHhCCcEEEeccccccCCCcccccccchhh
Confidence 455668899999999985 3678999999997654 446777788999999999999999754333211000
Q ss_pred -------CCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCC
Q 003886 643 -------LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT 715 (789)
Q Consensus 643 -------~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~ 715 (789)
..........+|+.++++++.++..++ ++|+|+|||+||++++.++.++| ++++++.+|....
T Consensus 81 ~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~~i~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~------- 150 (236)
T 1zi8_A 81 REQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSN-GKVGLVGYSLGGALAFLVASKGY--VDRAVGYYGVGLE------- 150 (236)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHTSSTTEE-EEEEEEEETHHHHHHHHHHHHTC--SSEEEEESCSSGG-------
T ss_pred hhhhhhhhhccCcchhhHHHHHHHHHHHhccCCC-CCEEEEEECcCHHHHHHHhccCC--ccEEEEecCcccc-------
Confidence 000011223678899999998775444 79999999999999999999987 8999887774210
Q ss_pred CCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 716 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
++...+.++++|+|+++|++|..+|++++.++++.+++
T Consensus 151 ----------------------------------~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~ 188 (236)
T 1zi8_A 151 ----------------------------------KQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGA 188 (236)
T ss_dssp ----------------------------------GCGGGGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHTT
T ss_pred ----------------------------------cchhhhhhcCCCEEEEecCCCCCCCHHHHHHHHHHHHh
Confidence 12234567889999999999999999999999998853
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=192.00 Aligned_cols=234 Identities=16% Similarity=0.089 Sum_probs=159.3
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
.+...++||||++|||++..+ +..++|.+ .+++.++++.... +.+ ..+.|||| +|+|.+....
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~-g~~~lw~~-~~g~~~~lt~~~~---~~~------~~~~~spd--~~l~~~~~~~---- 85 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSE-GSVNAYLY-DGGETVKLNREPI---NSV------LDPHYGVG--RVILVRDVSK---- 85 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEET-TEEEEEEE-ETTEEEECCSSCC---SEE------CEECTTCS--EEEEEEECST----
T ss_pred chheeecCCCCCeEEEEEccC-CceeEEEE-cCCCcEeeecccc---ccc------ccccCCCC--eEEEEeccCC----
Confidence 377889999999999998754 44556665 5666666554321 122 68999999 6888765310
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEc--cCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI--NSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~--~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (789)
+.....||.+++ .++.. .+. ... .....+|||||+.
T Consensus 86 ----------------------------------g~~~~~l~~~~~~~~g~~~-~l~--~~~-~~~~~~~s~dg~~---- 123 (582)
T 3o4h_A 86 ----------------------------------GAEQHALFKVNTSRPGEEQ-RLE--AVK-PMRILSGVDTGEA---- 123 (582)
T ss_dssp ----------------------------------TSCCEEEEEEETTSTTCCE-ECT--TSC-SBEEEEEEECSSC----
T ss_pred ----------------------------------CCcceEEEEEeccCCCccc-ccc--CCC-CceeeeeCCCCCe----
Confidence 002357999998 55544 552 222 2346799999999
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
++|++...+ .+.++|+ ++++.++|+.... ..++|||||++|++.+.+
T Consensus 124 ~~~~s~~~~--------------~~~l~d~-----------------~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~ 170 (582)
T 3o4h_A 124 VVFTGATED--------------RVALYAL-----------------DGGGLRELARLPG--FGFVSDIRGDLIAGLGFF 170 (582)
T ss_dssp EEEEEECSS--------------CEEEEEE-----------------ETTEEEEEEEESS--CEEEEEEETTEEEEEEEE
T ss_pred EEEEecCCC--------------CceEEEc-----------------cCCcEEEeecCCC--ceEEECCCCCEEEEEEEc
Confidence 999874322 3446687 6777788876544 789999999999998876
Q ss_pred CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (789)
.. ....|+++|+.+++.+.++..... ...+.|||||+.|+ .+...+...||+
T Consensus 171 ~~-------~~~~i~~~d~~~g~~~~l~~~~~~--------------------~~~~~~SpDG~~l~-~~~~~~~~~i~~ 222 (582)
T 3o4h_A 171 GG-------GRVSLFTSNLSSGGLRVFDSGEGS--------------------FSSASISPGMKVTA-GLETAREARLVT 222 (582)
T ss_dssp ET-------TEEEEEEEETTTCCCEEECCSSCE--------------------EEEEEECTTSCEEE-EEECSSCEEEEE
T ss_pred CC-------CCeEEEEEcCCCCCceEeecCCCc--------------------cccceECCCCCEEE-EccCCCeeEEEE
Confidence 41 234699999988776554432211 23568999999887 556667778999
Q ss_pred EECCCCcEEEecCCC-CCceeEE--------eeecCCEEEEEEeCCC
Q 003886 473 VNVSSGELLRITPAE-SNFSWSL--------LTLDGDNIIAVSSSPV 510 (789)
Q Consensus 473 ~dl~tg~~~~lt~~~-~~~~~~~--------~s~dg~~l~~~~ss~~ 510 (789)
+|+++|+.+ ++... ....... |++|| .++++.+...
T Consensus 223 ~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g 267 (582)
T 3o4h_A 223 VDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREG 267 (582)
T ss_dssp ECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETT
T ss_pred EcCCCCcEE-EccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCC
Confidence 999999988 44433 2223335 89999 6777665543
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-17 Score=192.90 Aligned_cols=272 Identities=14% Similarity=0.115 Sum_probs=173.1
Q ss_pred cccEEEEeCCCCCeEEEEec--CCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeec--CCCCE-EEEEeec
Q 003886 154 TGASAVVPSPSGSKLLVVRN--PENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWN--SDETL-IAYVAEE 228 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wS--pDg~~-la~~~~~ 228 (789)
..+..|++||| +++|++. .+++...+|.+..+++.++++.....+...+...+ -..+.|| |||++ |+|+...
T Consensus 24 ~~~~~~~~s~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~SPDg~~~la~~~~~ 100 (662)
T 3azo_A 24 GRPACVGAVGD--EVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYS-GFPWAGVPRPAGGPLLVFTHFG 100 (662)
T ss_dssp SCCEEEEEETT--EEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTC-CCCEEEECCSSSSCEEEEEBTT
T ss_pred CccceeEEcCC--eEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccC-CccceeeeecCCCeEEEEEECC
Confidence 35788999965 7888876 33344455555445555554433222211110000 0145565 99999 9987432
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEcc--C-CceEeccCCC---CCCccceEEE
Q 003886 229 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ--S-GEVQAVKGIP---KSLSVGQVVW 302 (789)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~--~-g~~~~l~~~~---~~~~~~~~~w 302 (789)
...||+++++ + ++.++++..+ ....+..++|
T Consensus 101 -------------------------------------------~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 137 (662)
T 3azo_A 101 -------------------------------------------DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVL 137 (662)
T ss_dssp -------------------------------------------TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEE
T ss_pred -------------------------------------------CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEE
Confidence 2569999998 5 8888884222 2345678999
Q ss_pred eeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCC------CCeeecC-CCCCccC
Q 003886 303 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED------LPVVNLT-ESISSAF 375 (789)
Q Consensus 303 SPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~------~~~~~Lt-~~~~~~~ 375 (789)
||||+. |+|++....... .......||++|+ ++ ++.++|+ .+.....
T Consensus 138 spDg~~----l~~~~~~~~~~~-----~~~~~~~i~~~~~-----------------~~~~~~~~~~~~~l~~~~~~~~~ 191 (662)
T 3azo_A 138 LPERGE----VWCMAEEFTGEG-----PSDVRRFLAAVPL-----------------DGSAAADRSAVRELSDDAHRFVT 191 (662)
T ss_dssp ETTTTE----EEEEEEEECSSS-----TTCEEEEEEEEET-----------------TSTTTTCGGGSEESSCSCSSEEC
T ss_pred CCCCCE----EEEEEecccCCC-----CCCceeEEEEEEC-----------------CCCccccCCceeEEEecCCCccc
Confidence 999999 999885321000 0012247999998 55 6788888 7666788
Q ss_pred cceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC-C---CCCCcccceeeEEeeeeccCCCCCccccccCCCCCcc
Q 003886 376 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT-N---GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 451 (789)
Q Consensus 376 ~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~-~---~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~w 451 (789)
.|+|||||++|+|.+.... +......+|+++|+.+ + ..+.++... ...+..+.|
T Consensus 192 ~~~~SpDG~~la~~~~~~~---~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~-------------------~~~~~~~~~ 249 (662)
T 3azo_A 192 GPRLSPDGRQAVWLAWDHP---RMPWEGTELKTARVTEDGRFADTRTLLGGP-------------------EEAIAQAEW 249 (662)
T ss_dssp CCEECTTSSEEEEEEECTT---CCTTTCEEEEEEEECTTSCEEEEEEEEEET-------------------TBCEEEEEE
T ss_pred CceECCCCCEEEEEECCCC---CCCCCCcEEEEEEECCCCcccccEEeCCCC-------------------CceEcceEE
Confidence 9999999999999986542 1111235799999983 4 222221110 012346789
Q ss_pred ccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCc---------eeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 452 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNF---------SWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 452 s~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~---------~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
+|||+ ++|++..++..+||++|+++|+.++++...... ....+++++. ++++.+. .-..|+++++.+
T Consensus 250 spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~--~~~~l~~~d~~~ 325 (662)
T 3azo_A 250 APDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGL-IAVVHGK--GAAVLGILDPES 325 (662)
T ss_dssp CTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBS--SSCEEEEEETTT
T ss_pred CCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCE-EEEEEEc--CccEEEEEECCC
Confidence 99999 888887777779999999999999988754422 1234445544 6666665 456788888654
Q ss_pred c
Q 003886 523 K 523 (789)
Q Consensus 523 ~ 523 (789)
+
T Consensus 326 ~ 326 (662)
T 3azo_A 326 G 326 (662)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3llc_A Putative hydrolase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE PG4; 1.80A {Agrobacterium vitis} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=163.93 Aligned_cols=205 Identities=17% Similarity=0.223 Sum_probs=133.1
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
...+|..+....+.+. ..+.|+||++||++.+.....+......|+++||.|+++|+||. |.+.. ...
T Consensus 18 ~~~~g~~l~~~~~~~~----~~~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G~---G~s~~-----~~~ 85 (270)
T 3llc_A 18 QGSDARSIAALVRAPA----QDERPTCIWLGGYRSDMTGTKALEMDDLAASLGVGAIRFDYSGH---GASGG-----AFR 85 (270)
T ss_dssp SGGGCEEEEEEEECCS----STTSCEEEEECCTTCCTTSHHHHHHHHHHHHHTCEEEEECCTTS---TTCCS-----CGG
T ss_pred eccCcceEEEEeccCC----CCCCCeEEEECCCccccccchHHHHHHHHHhCCCcEEEeccccC---CCCCC-----ccc
Confidence 4457888887766653 23479999999987654333344466778889999999999984 43321 112
Q ss_pred cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHh---CC---CceeEEEEeCCccchhhhhcCCCCCcchh
Q 003886 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ---AP---DKFVAAAARNPLCNLALMVGTTDIPDWCY 722 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~---~p---~~~~a~v~~~pv~~~~~~~~~~~~~~~~~ 722 (789)
...++++.+.+..+++. +..++++|+|||+||.+++.++.+ +| ++++++|+.+|..++..............
T Consensus 86 ~~~~~~~~~d~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~~~~p~~~~~v~~~il~~~~~~~~~~~~~~~~~~~~~ 163 (270)
T 3llc_A 86 DGTISRWLEEALAVLDH--FKPEKAILVGSSMGGWIALRLIQELKARHDNPTQVSGMVLIAPAPDFTSDLIEPLLGDRER 163 (270)
T ss_dssp GCCHHHHHHHHHHHHHH--HCCSEEEEEEETHHHHHHHHHHHHHHTCSCCSCEEEEEEEESCCTTHHHHTTGGGCCHHHH
T ss_pred cccHHHHHHHHHHHHHH--hccCCeEEEEeChHHHHHHHHHHHHHhccccccccceeEEecCcccchhhhhhhhhhhhhh
Confidence 23344544444444443 236789999999999999999999 99 99999999999877644221111110000
Q ss_pred ---hhhccCccccccCCCC---ChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 723 ---VESYGSKGKDSFTESP---SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 723 ---~~~~~~~~~~~~~~~~---~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
...........+...+ .......+........+.++++|+|++||++|..||++++.++++.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~v~~~~~~~~~~~~~~ 234 (270)
T 3llc_A 164 AELAENGYFEEVSEYSPEPNIFTRALMEDGRANRVMAGMIDTGCPVHILQGMADPDVPYQHALKLVEHLPA 234 (270)
T ss_dssp HHHHHHSEEEECCTTCSSCEEEEHHHHHHHHHTCCTTSCCCCCSCEEEEEETTCSSSCHHHHHHHHHTSCS
T ss_pred hhhhccCcccChhhcccchhHHHHHHHhhhhhhhhhhhhhcCCCCEEEEecCCCCCCCHHHHHHHHHhcCC
Confidence 0000000000111111 1123344445555667889999999999999999999999999998875
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.6e-17 Score=198.16 Aligned_cols=180 Identities=9% Similarity=0.022 Sum_probs=125.1
Q ss_pred CceEEEEEccCCceEeccCCC---------CCCccceEEEe-eCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEe
Q 003886 272 QPSLFVININSGEVQAVKGIP---------KSLSVGQVVWA-PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 341 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~---------~~~~~~~~~wS-PDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d 341 (789)
...|++||++++++..+.+.. ....+..++|| |||+. |+|.+. ..|+.++
T Consensus 264 ~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~----la~~~~----------------~~i~~~~ 323 (1045)
T 1k32_A 264 GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDL----IAFVSR----------------GQAFIQD 323 (1045)
T ss_dssp TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGC----EEEEET----------------TEEEEEC
T ss_pred CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCE----EEEEEc----------------CEEEEEc
Confidence 445666666555444432100 01146789999 99999 999871 2689999
Q ss_pred cccccchhhhhhhhcCCCCCCCeeecCCCCC-ccCcceecCCCCEEEEEecCCCCCCCCccccceeE-EeecCCCCCCCc
Q 003886 342 VSLYKSEASELELKESSSEDLPVVNLTESIS-SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLH-RIDWPTNGNFSS 419 (789)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~-~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~-~~d~~~~~~~~~ 419 (789)
+ .++..+.++.+.. ....++|| ||+.|++.+.+ .+|| ++|+.++..+.+
T Consensus 324 ~-----------------~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~-----------~~l~~~~d~~~~~~~~l 374 (1045)
T 1k32_A 324 V-----------------SGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTRE-----------GDFLGIYDYRTGKAEKF 374 (1045)
T ss_dssp T-----------------TSSBEEECSCCSCEEEEEECSS-SEEEEEEEETT-----------EEEEEEEETTTCCEEEC
T ss_pred C-----------------CCCceEEccCCCcceEEeeeEc-CCCeEEEEECC-----------CceEEEEECCCCCceEe
Confidence 8 6677777877766 78899999 99999998852 3699 999887654433
Q ss_pred ccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC-CCCceeEEeeec
Q 003886 420 LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-ESNFSWSLLTLD 498 (789)
Q Consensus 420 t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~-~~~~~~~~~s~d 498 (789)
+ ... ..+..+.|||||+.|++... + ..|+.+|+.+|+.+.+... .+.+....|+||
T Consensus 375 ~-~~~-------------------~~~~~~~~SpDG~~la~~~~-~--~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpD 431 (1045)
T 1k32_A 375 E-ENL-------------------GNVFAMGVDRNGKFAVVAND-R--FEIMTVDLETGKPTVIERSREAMITDFTISDN 431 (1045)
T ss_dssp C-CCC-------------------CSEEEEEECTTSSEEEEEET-T--SEEEEEETTTCCEEEEEECSSSCCCCEEECTT
T ss_pred c-CCc-------------------cceeeeEECCCCCEEEEECC-C--CeEEEEECCCCceEEeccCCCCCccceEECCC
Confidence 3 110 02235689999998887643 2 3788999999999888743 334455789999
Q ss_pred CCEEEEEEeCC------CCCCeEEEEeeccc
Q 003886 499 GDNIIAVSSSP------VDVPQVKYGYFVDK 523 (789)
Q Consensus 499 g~~l~~~~ss~------~~p~~i~~~~~~~~ 523 (789)
|++|++..... ..+..+++.++.++
T Consensus 432 G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g 462 (1045)
T 1k32_A 432 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGR 462 (1045)
T ss_dssp SCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred CCeEEEEecCccccccCCCCCeEEEEECCCC
Confidence 99998887654 34567888887543
|
| >2fuk_A XC6422 protein; A/B hydrolase, structural genomics, X-RAY diffraction; 1.60A {Xanthomonas campestris} SCOP: c.69.1.36 | Back alignment and structure |
|---|
Probab=99.74 E-value=9e-17 Score=160.20 Aligned_cols=164 Identities=13% Similarity=0.104 Sum_probs=125.2
Q ss_pred eeecCCCeeEEEEEEecCCCCCC--CCCcEEEEEcCCCC---CCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhc
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDC--SCDPLIVVLHGGPH---SVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQ 641 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~--~~~P~vv~~HGg~~---~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~ 641 (789)
.+...+| .+.++++.|.+ . ++.|+||++||++. ......|......|+++||.|+++|+||. |.+...
T Consensus 14 ~~~~~~g-~~~~~~~~p~~---~~~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g~---g~s~~~ 86 (220)
T 2fuk_A 14 TLDGPVG-PLDVAVDLPEP---DVAVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSV---GTSAGS 86 (220)
T ss_dssp EEEETTE-EEEEEEECCCT---TSCCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTS---TTCCSC
T ss_pred EEeCCCC-eEEEEEEeCCC---CCccccCEEEEECCCCCcCCcccchHHHHHHHHHHHCCCeEEEEecCCC---CCCCCC
Confidence 3445567 89999999973 3 56899999999652 22233456677889999999999999984 333211
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcch
Q 003886 642 SLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC 721 (789)
Q Consensus 642 ~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~ 721 (789)
........+|+.++++++.++ .+.++++++|||+||.+++.++.++ +++++|+.+|......
T Consensus 87 ---~~~~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~~--~v~~~v~~~~~~~~~~----------- 148 (220)
T 2fuk_A 87 ---FDHGDGEQDDLRAVAEWVRAQ--RPTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWD----------- 148 (220)
T ss_dssp ---CCTTTHHHHHHHHHHHHHHHH--CTTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBC-----------
T ss_pred ---cccCchhHHHHHHHHHHHHhc--CCCCcEEEEEECHHHHHHHHHHhhc--cccEEEEecccccchh-----------
Confidence 122344589999999999988 3678999999999999999999986 8999999998764211
Q ss_pred hhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 722 YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
...+. ..+|+|++||++|..+|++++.++++.++
T Consensus 149 ------------------------------~~~~~-~~~p~l~i~g~~D~~~~~~~~~~~~~~~~ 182 (220)
T 2fuk_A 149 ------------------------------FSDVQ-PPAQWLVIQGDADEIVDPQAVYDWLETLE 182 (220)
T ss_dssp ------------------------------CTTCC-CCSSEEEEEETTCSSSCHHHHHHHHTTCS
T ss_pred ------------------------------hhhcc-cCCcEEEEECCCCcccCHHHHHHHHHHhC
Confidence 00111 25799999999999999999999999884
|
| >4e15_A Kynurenine formamidase; alpha/beta hydrolase fold, hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A {Drosophila melanogaster} PDB: 4e14_A* 4e11_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.1e-18 Score=178.73 Aligned_cols=182 Identities=15% Similarity=0.148 Sum_probs=132.6
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHH
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 654 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~-~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D 654 (789)
+...++.|.+ ..++.|+||++|||++.. ....|....+.|+++||.|+++||||+++... ...++|
T Consensus 68 ~~~~~~~p~~--~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~l~~~G~~v~~~d~r~~~~~~~-----------~~~~~d 134 (303)
T 4e15_A 68 QLVDVFYSEK--TTNQAPLFVFVHGGYWQEMDMSMSCSIVGPLVRRGYRVAVMDYNLCPQVTL-----------EQLMTQ 134 (303)
T ss_dssp CEEEEEECTT--CCTTCCEEEEECCSTTTSCCGGGSCTTHHHHHHTTCEEEEECCCCTTTSCH-----------HHHHHH
T ss_pred cEEEEEecCC--CCCCCCEEEEECCCcCcCCChhHHHHHHHHHHhCCCEEEEecCCCCCCCCh-----------hHHHHH
Confidence 4555777863 456789999999987543 23345556788999999999999998654321 224789
Q ss_pred HHHHHHHHHHc-CCCCCccEEEEEcCccHHHHHHHHHhCC-------CceeEEEEeCCccchhhhhcCCCCCcchhhhhc
Q 003886 655 VLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAP-------DKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 726 (789)
Q Consensus 655 ~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~~~~~p-------~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~ 726 (789)
+.++++++.+. ..++.++|+|+|||+||++++.++.+.. ++++++|+.+|+.++..+...... ....
T Consensus 135 ~~~~~~~l~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~p~~~~v~~~v~~~~~~~~~~~~~~~~~---~~~~-- 209 (303)
T 4e15_A 135 FTHFLNWIFDYTEMTKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWALIFLCGVYDLRELSNLESV---NPKN-- 209 (303)
T ss_dssp HHHHHHHHHHHHHHTTCSCEEEEEETHHHHHHGGGGGCTTTSCHHHHHTEEEEEEESCCCCCHHHHTCTTT---SGGG--
T ss_pred HHHHHHHHHHHhhhcCCCeEEEEeecHHHHHHHHHHhccccccCcccccccEEEEEeeeeccHhhhccccc---chhh--
Confidence 99999999873 2356899999999999999999988643 279999999999987655431100 0001
Q ss_pred cCccccccCCCCChhhHHHHHhcCcc-ccCCCC----CCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 727 GSKGKDSFTESPSVEDLTRFHSKSPI-SHISKV----KTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~sp~-~~~~~i----~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
..... .+.+...+|+ ..+.++ ++|+||+||++|..||+.++.+++++|+
T Consensus 210 -------~~~~~----~~~~~~~sp~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~l~ 263 (303)
T 4e15_A 210 -------ILGLN----ERNIESVSPMLWEYTDVTVWNSTKIYVVAAEHDSTTFIEQSRHYADVLR 263 (303)
T ss_dssp -------TTCCC----TTTTTTTCGGGCCCCCGGGGTTSEEEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred -------hhcCC----HHHHHHcCchhhcccccccCCCCCEEEEEeCCCCCCchHHHHHHHHHHH
Confidence 11111 1223456777 566666 8999999999999999999999999885
|
| >4fbl_A LIPS lipolytic enzyme; thermostable, structural genomics, enzyme function initiativ structural proteomics in europe, spine; HET: SPD; 1.99A {Unidentified} PDB: 4fbm_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=173.11 Aligned_cols=186 Identities=20% Similarity=0.232 Sum_probs=119.7
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
..+.||++||.+++ ...|....+.|+++||.|+++|+|| +|.+........+ ...++|+.++++++.+. .
T Consensus 50 ~~~~VlllHG~~~s--~~~~~~la~~La~~Gy~Via~Dl~G---hG~S~~~~~~~~~-~~~~~d~~~~~~~l~~~----~ 119 (281)
T 4fbl_A 50 SRIGVLVSHGFTGS--PQSMRFLAEGFARAGYTVATPRLTG---HGTTPAEMAASTA-SDWTADIVAAMRWLEER----C 119 (281)
T ss_dssp SSEEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEECCCTT---SSSCHHHHHTCCH-HHHHHHHHHHHHHHHHH----C
T ss_pred CCceEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEECCCC---CCCCCccccCCCH-HHHHHHHHHHHHHHHhC----C
Confidence 44668999996654 5678888899999999999999998 5655332111111 11257888888888765 3
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhh-----hcCCCCCcch--hhhhccCccccccC--CCCChh
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM-----VGTTDIPDWC--YVESYGSKGKDSFT--ESPSVE 741 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~ 741 (789)
++++|+|||+||.+++.++.++|++++++|+.+|...+... .......... ............+. ..+ ..
T Consensus 120 ~~v~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 198 (281)
T 4fbl_A 120 DVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRMESPDLAALAFNPDAPAELPGIGSDIKAEGVKELAYPVTP-VP 198 (281)
T ss_dssp SEEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCSCCCCHHHHHHHTCTTCCSEEECCCCCCSSTTCCCCCCSEEE-GG
T ss_pred CeEEEEEECcchHHHHHHHHhCchhhhhhhcccchhcccchhhHHHHHhHhhHHhhhcchhhhhhHHHHHhhhccCc-hH
Confidence 68999999999999999999999999999999987543211 0000000000 00000000000000 000 01
Q ss_pred hHHHHHhc--CccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 742 DLTRFHSK--SPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 742 ~~~~~~~~--sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
....+... .....+.+|++|+|++||++|.+||++++..+++.++.
T Consensus 199 ~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~v~~~~~~~l~~~l~~ 246 (281)
T 4fbl_A 199 AIKHLITIGAVAEMLLPRVKCPALIIQSREDHVVPPHNGELIYNGIGS 246 (281)
T ss_dssp GHHHHHHHHHHHHHHGGGCCSCEEEEEESSCSSSCTHHHHHHHHHCCC
T ss_pred HHHHHHHhhhhccccccccCCCEEEEEeCCCCCcCHHHHHHHHHhCCC
Confidence 11111110 11134678999999999999999999999999999864
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.1e-16 Score=183.58 Aligned_cols=263 Identities=11% Similarity=0.080 Sum_probs=173.6
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
.+..++|||| ++++|..+. .++..+ .+++..+++.....+ ..++|||||++|||+.
T Consensus 83 ~v~~~~~spd-~~~~~~~~~-----~i~~~d~~~~~~~~l~~~~~~~----------~~~~~SpdG~~la~~~------- 139 (706)
T 2z3z_A 83 PSFRTLDAGR-GLVVLFTQG-----GLVGFDMLARKVTYLFDTNEET----------ASLDFSPVGDRVAYVR------- 139 (706)
T ss_dssp CCEEEEETTT-TEEEEEETT-----EEEEEETTTTEEEEEECCTTCC----------TTCEECTTSSEEEEEE-------
T ss_pred CceeEEECCC-CeEEEEECC-----EEEEEECCCCceEEccCCcccc----------cCCcCCCCCCEEEEEE-------
Confidence 4788999999 888888653 466555 456655555433333 7899999999999962
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccC-----CceEeccCCCCCCc------------
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS-----GEVQAVKGIPKSLS------------ 296 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~-----g~~~~l~~~~~~~~------------ 296 (789)
+..|++||+.+ ++.++++ .....
T Consensus 140 --------------------------------------~~~i~v~~~~~~~~~~g~~~~~~--~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 140 --------------------------------------NHNLYIARGGKLGEGMSRAIAVT--IDGTETLVYGQAVHQRE 179 (706)
T ss_dssp --------------------------------------TTEEEEEECBCTTSCCCCCEESC--SCCBTTEEESSCCGGGC
T ss_pred --------------------------------------CCeEEEEecCcccccCCCcEEec--cCCCCCeEcccchhhhh
Confidence 25799999999 8888773 32222
Q ss_pred ---cceEEEeeCCCCCccEEEEEeecCCcee--------------eeeee----eccCCcceEEEecccccchhhhhhhh
Q 003886 297 ---VGQVVWAPLNEGLHQYLVFVGWSSETRK--------------LGIKY----CYNRPCALYAVRVSLYKSEASELELK 355 (789)
Q Consensus 297 ---~~~~~wSPDg~~~~~~l~f~~~~~~~~~--------------~g~~~----~~~~~~~l~~~d~~~~~~~~~~~~~~ 355 (789)
+..+.|||||+. |+|.+....... ....| ..+....|+++|+
T Consensus 180 ~~~~~~~~~SpDg~~----la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~------------- 242 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSC----LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL------------- 242 (706)
T ss_dssp TTCCCSEEECTTSSE----EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET-------------
T ss_pred cCCCceEEECCCCCE----EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC-------------
Confidence 478999999999 999874321000 00000 0113357999998
Q ss_pred cCCCCCCCeeecCCC---CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCC-CCCcccceeeEEeeee
Q 003886 356 ESSSEDLPVVNLTES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG-NFSSLEKIVDVIPVVQ 431 (789)
Q Consensus 356 ~~~~~~~~~~~Lt~~---~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~-~~~~t~~~~~v~~~~~ 431 (789)
++++.+.++.. ...+..++|||||++|++.+.... .....|+++|+.++. .+.+....
T Consensus 243 ----~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~------~~~~~v~~~d~~~g~~~~~~~~~~-------- 304 (706)
T 2z3z_A 243 ----ATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA------QNECKVNAYDAETGRFVRTLFVET-------- 304 (706)
T ss_dssp ----TTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT------SCEEEEEEEETTTCCEEEEEEEEE--------
T ss_pred ----CCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC------CCeeEEEEEECCCCceeeEEEEcc--------
Confidence 66766666532 345678999999999999775431 134579999998762 22111000
Q ss_pred ccCCCCCccccccCCCCCcccc--CCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCcee-EEeeecCCEEEEEEeC
Q 003886 432 CAEGDCFPGLYSSSILSNPWLS--DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSW-SLLTLDGDNIIAVSSS 508 (789)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~--Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~-~~~s~dg~~l~~~~ss 508 (789)
... |...+..+.|+| ||+ +++.+..++...||.++..++.++.++........ ..+++||+.|++..+.
T Consensus 305 ---~~~----~~~~~~~~~~sp~~dg~-~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 305 ---DKH----YVEPLHPLTFLPGSNNQ-FIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp ---CSS----CCCCCSCCEECTTCSSE-EEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESS
T ss_pred ---CCC----eECccCCceeecCCCCE-EEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecC
Confidence 000 111124678999 998 55666667888999999878888888776544433 5799999999888765
Q ss_pred CCC-CCeEEEEeeccc
Q 003886 509 PVD-VPQVKYGYFVDK 523 (789)
Q Consensus 509 ~~~-p~~i~~~~~~~~ 523 (789)
... -..||..++.++
T Consensus 377 ~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 377 ASPLERHFYCIDIKGG 392 (706)
T ss_dssp SCTTCBEEEEEETTCC
T ss_pred CCCceEEEEEEEcCCC
Confidence 331 246888776543
|
| >1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.7e-17 Score=191.03 Aligned_cols=208 Identities=12% Similarity=0.092 Sum_probs=144.2
Q ss_pred ecCCCee--EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc---------------------------------------
Q 003886 569 TKGAQKP--FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL--------------------------------------- 607 (789)
Q Consensus 569 ~~~~g~~--l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~--------------------------------------- 607 (789)
+..||.+ |.+.++.|++ .+++|+||..||...+...
T Consensus 179 ~~~DG~~d~L~a~l~~P~~---~~k~PvIv~~~pYg~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~ 255 (763)
T 1lns_A 179 SEQRGENDLIKIQIIRPKS---TEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAKEL 255 (763)
T ss_dssp TTCSSSCCEEEEEEEECCC---SSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCCCCCCCCCCCCCC
T ss_pred cCCCCCeeeEEEEEEecCC---CCcccEEEecCCcCCCCcccccccccccccccccccCccccccccccccccccccccc
Confidence 5679999 9999999984 4689999988774332100
Q ss_pred -------hhh-----HHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHc----------
Q 003886 608 -------SSY-----SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM---------- 665 (789)
Q Consensus 608 -------~~~-----~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~---------- 665 (789)
..| ....++|+++||+|+++|+||.++.+.. ...++..+.+|+.++++|+..+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~la~~GYaVv~~D~RG~G~S~G~-----~~~~~~~e~~D~~a~IdwL~~~~~~~~d~~~~ 330 (763)
T 1lns_A 256 PIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGF-----QTSGDYQQIYSMTAVIDWLNGRARAYTSRKKT 330 (763)
T ss_dssp CEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSC-----CCTTSHHHHHHHHHHHHHHTTSSCEESSTTCC
T ss_pred cccccchhccccccccchHHHHHHCCCEEEEECCCcCCCCCCc-----CCCCCHHHHHHHHHHHHHHhhccccccccccc
Confidence 011 1234789999999999999996554322 2234445789999999999843
Q ss_pred -----CCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCC-------CCCcchhh----hhccCc
Q 003886 666 -----GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT-------DIPDWCYV----ESYGSK 729 (789)
Q Consensus 666 -----~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~-------~~~~~~~~----~~~~~~ 729 (789)
+ .+..||+++|+||||++++.+|+++|+.++++|+.+|+.++..++... ..+.+... ..+...
T Consensus 331 ~~v~q~-~~~grVgl~G~SyGG~ial~~Aa~~p~~lkaiV~~~~~~d~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~~~~ 409 (763)
T 1lns_A 331 HEIKAS-WANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRN 409 (763)
T ss_dssp CEECCT-TEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHHHHHHHHCGGG
T ss_pred cccccc-CCCCcEEEEEECHHHHHHHHHHHhCCcccEEEEEecccccHHHHhhhcchhhhcccCCchhhhHHhHHHHhhh
Confidence 3 345799999999999999999999999999999999998765543221 11111000 000000
Q ss_pred c---------------cccc-----CCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 730 G---------------KDSF-----TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 730 ~---------------~~~~-----~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
. .+.+ ...+. ....+...++..++++|++|+|++||.+|.+||+.++.+++++|++
T Consensus 410 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~w~~~s~~~~l~~I~~PvLii~G~~D~~vp~~~a~~l~~al~~ 485 (763)
T 1lns_A 410 LDGADFLKGNAEYEKRLAEMTAALDRKSGD--YNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALPE 485 (763)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHCTTTCC--CCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSCTHHHHHHHHHSCT
T ss_pred cCcchhhhHHHHHHHHHHHHHhhhhhccCc--hhHHhhccChhhHhhcCCCCEEEEEECCCCCCChHHHHHHHHhhcc
Confidence 0 0000 00010 1123445677888999999999999999999999999999999975
|
| >3ksr_A Putative serine hydrolase; catalytic triad, structural genomics, JOIN for structural genomics, JCSG; 2.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-18 Score=178.26 Aligned_cols=192 Identities=16% Similarity=0.177 Sum_probs=134.1
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~ 651 (789)
+|..+.++++.|. +.|+||++||++++ ...|......|+++||.|+++|+|| +|.+..... .......
T Consensus 14 ~g~~l~~~~~~p~------~~p~vv~~HG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G---~g~s~~~~~-~~~~~~~ 81 (290)
T 3ksr_A 14 GQDELSGTLLTPT------GMPGVLFVHGWGGS--QHHSLVRAREAVGLGCICMTFDLRG---HEGYASMRQ-SVTRAQN 81 (290)
T ss_dssp TTEEEEEEEEEEE------SEEEEEEECCTTCC--TTTTHHHHHHHHTTTCEEECCCCTT---SGGGGGGTT-TCBHHHH
T ss_pred CCeEEEEEEecCC------CCcEEEEeCCCCCC--cCcHHHHHHHHHHCCCEEEEeecCC---CCCCCCCcc-cccHHHH
Confidence 6789999999985 78999999998764 4567777889999999999999998 444432211 1111233
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccc
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 731 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (789)
.+|+.++++++.+++.+|.++|+|+|||+||++++.++.++| ++++++.+|.......+ ..+...+.. ....
T Consensus 82 ~~d~~~~i~~l~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~~--~~~~~l~~p~~~~~~~~---~~~~~~~~~---~~~~ 153 (290)
T 3ksr_A 82 LDDIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP--VEWLALRSPALYKDAHW---DQPKVSLNA---DPDL 153 (290)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHTTTSC--CSEEEEESCCCCCSSCT---TSBHHHHHH---STTH
T ss_pred HHHHHHHHHHHHhcCCCCccceEEEEEchHHHHHHHHHHhCC--CCEEEEeCcchhhhhhh---hcccccccC---Chhh
Confidence 689999999999887788899999999999999999999887 78888888876432110 001100000 0000
Q ss_pred cccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 732 DSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
..+..... .+...++...+.++++|+|++||++|..||++++..+++.+++.
T Consensus 154 ~~~~~~~~-----~~~~~~~~~~~~~~~~P~lii~G~~D~~v~~~~~~~~~~~~~~~ 205 (290)
T 3ksr_A 154 MDYRRRAL-----APGDNLALAACAQYKGDVLLVEAENDVIVPHPVMRNYADAFTNA 205 (290)
T ss_dssp HHHTTSCC-----CGGGCHHHHHHHHCCSEEEEEEETTCSSSCHHHHHHHHHHTTTS
T ss_pred hhhhhhhh-----hhccccHHHHHHhcCCCeEEEEecCCcccChHHHHHHHHHhccC
Confidence 00110000 00112223345678899999999999999999999999998753
|
| >2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.1e-17 Score=163.56 Aligned_cols=163 Identities=20% Similarity=0.234 Sum_probs=124.3
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCC--CCCC-
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP--GKVG- 648 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~--~~~~- 648 (789)
+|.++.++++.|.+ +.|+||++||++.......+....+.|+++||.|+++|+|| +|.+...... ....
T Consensus 20 ~g~~l~~~~~~p~~-----~~p~vv~~hG~~~~~~~~~~~~~~~~l~~~G~~v~~~d~~g---~g~s~~~~~~~~~~~~~ 91 (223)
T 2o2g_A 20 GEVKLKGNLVIPNG-----ATGIVLFAHGSGSSRYSPRNRYVAEVLQQAGLATLLIDLLT---QEEEEIDLRTRHLRFDI 91 (223)
T ss_dssp TTEEEEEEEECCTT-----CCEEEEEECCTTCCTTCHHHHHHHHHHHHHTCEEEEECSSC---HHHHHHHHHHCSSTTCH
T ss_pred CCeEEEEEEecCCC-----CceEEEEecCCCCCCCccchHHHHHHHHHCCCEEEEEcCCC---cCCCCccchhhcccCcH
Confidence 78899999999862 68999999998765443345567788999999999999997 4443322111 0011
Q ss_pred cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccC
Q 003886 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~ 728 (789)
....+|+.++++++..++.+|.++++++|||+||.+++.++.++|++++++|+.+|..++.
T Consensus 92 ~~~~~d~~~~i~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~------------------- 152 (223)
T 2o2g_A 92 GLLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAAAERPETVQAVVSRGGRPDLA------------------- 152 (223)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSEEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCGGGC-------------------
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCcEEEEEeCccHHHHHHHHHhCCCceEEEEEeCCCCCcC-------------------
Confidence 2225788999999998887899999999999999999999999999999999999865320
Q ss_pred ccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHC
Q 003886 729 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHI 785 (789)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l 785 (789)
...+.++++|+|+++|++|..+|... .+.++.+
T Consensus 153 -----------------------~~~~~~~~~P~l~i~g~~D~~~~~~~-~~~~~~~ 185 (223)
T 2o2g_A 153 -----------------------PSALPHVKAPTLLIVGGYDLPVIAMN-EDALEQL 185 (223)
T ss_dssp -----------------------TTTGGGCCSCEEEEEETTCHHHHHHH-HHHHHHC
T ss_pred -----------------------HHHHhcCCCCEEEEEccccCCCCHHH-HHHHHhh
Confidence 02345678999999999999998554 4444444
|
| >3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold seven-stranded beta-sandwich, structural genomics, structural genomics consortium, SGC; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.6e-17 Score=179.84 Aligned_cols=191 Identities=13% Similarity=0.099 Sum_probs=129.0
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHH
Q 003886 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 654 (789)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D 654 (789)
.+.+.++.|+ ..++.|+||++||+++.. +......|+++||.|+++|+||.++.. ........+|
T Consensus 144 ~l~~~l~~P~---~~~~~P~Vv~~hG~~~~~----~~~~a~~La~~Gy~V~a~D~rG~g~~~--------~~~~~~~~~d 208 (422)
T 3k2i_A 144 RVRATLFLPP---GPGPFPGIIDIFGIGGGL----LEYRASLLAGHGFATLALAYYNFEDLP--------NNMDNISLEY 208 (422)
T ss_dssp TEEEEEEECS---SSCCBCEEEEECCTTCSC----CCHHHHHHHTTTCEEEEEECSSSTTSC--------SSCSCEETHH
T ss_pred cEEEEEEcCC---CCCCcCEEEEEcCCCcch----hHHHHHHHHhCCCEEEEEccCCCCCCC--------CCcccCCHHH
Confidence 5899999997 356789999999976642 233477899999999999999954432 2233456899
Q ss_pred HHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhh---cCCCCCcchhh-h--hccC
Q 003886 655 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV---GTTDIPDWCYV-E--SYGS 728 (789)
Q Consensus 655 ~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~---~~~~~~~~~~~-~--~~~~ 728 (789)
+.++++++.++..+|.++|+|+|||+||++++.++.++|+ ++++|+.+|........ .....+...+. . ....
T Consensus 209 ~~~~~~~l~~~~~v~~~~i~l~G~S~GG~lAl~~a~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (422)
T 3k2i_A 209 FEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKN-VSATVSINGSGISGNTAINYKHSSIPPLGYDLRRIKVAF 287 (422)
T ss_dssp HHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSS-EEEEEEESCCSBCCSSCEEETTEEECCCCBCGGGCEECT
T ss_pred HHHHHHHHHhCcCcCCCCEEEEEECHHHHHHHHHHhhCcC-ccEEEEEcCcccccCCchhhcCCcCCCcccchhhcccCc
Confidence 9999999999888899999999999999999999999997 99999998876321100 00000000000 0 0000
Q ss_pred cccc---ccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHH-HHHHHHCC
Q 003886 729 KGKD---SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQVIYHIP 786 (789)
Q Consensus 729 ~~~~---~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~-~~l~~~l~ 786 (789)
.... .....+. .....+....+.++++|+|++||++|.++|.++. ..+++.|+
T Consensus 288 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~~l~ 344 (422)
T 3k2i_A 288 SGLVDIVDIRNALV-----GGYKNPSMIPIEKAQGPILLIVGQDDHNWRSELYAQTVSERLQ 344 (422)
T ss_dssp TSCEECTTCBCCCT-----TGGGSTTBCCGGGCCSCEEEEEETTCSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHhhhh-----hcccccccccHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 0000 0000110 0112233345678899999999999999999866 56776654
|
| >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-17 Score=180.13 Aligned_cols=199 Identities=17% Similarity=0.217 Sum_probs=131.9
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHH-HHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~-~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
+|..+.++++.+ ..++.|+||++||++.+ ...|.... ..+.++||.|+++|+|| +|.+..... .....
T Consensus 143 ~~~~l~~~~~~~----~~~~~p~vv~~HG~~~~--~~~~~~~~~~~~~~~g~~vi~~D~~G---~G~s~~~~~--~~~~~ 211 (405)
T 3fnb_A 143 EGELLPGYAIIS----EDKAQDTLIVVGGGDTS--REDLFYMLGYSGWEHDYNVLMVDLPG---QGKNPNQGL--HFEVD 211 (405)
T ss_dssp TTEEEEEEEECC----SSSCCCEEEEECCSSCC--HHHHHHHTHHHHHHTTCEEEEECCTT---STTGGGGTC--CCCSC
T ss_pred CCeEEEEEEEcC----CCCCCCEEEEECCCCCC--HHHHHHHHHHHHHhCCcEEEEEcCCC---CcCCCCCCC--CCCcc
Confidence 578899988853 34556999999996553 44444333 36678999999999998 454432222 22234
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcC-----CCCCcchhhhh
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-----TDIPDWCYVES 725 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~-----~~~~~~~~~~~ 725 (789)
..+|+.++++++..++ ++|+|+|||+||++++.++.++| +++++|+.+|+.++...... ...+.+.....
T Consensus 212 ~~~d~~~~~~~l~~~~----~~v~l~G~S~GG~~a~~~a~~~p-~v~~~v~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~ 286 (405)
T 3fnb_A 212 ARAAISAILDWYQAPT----EKIAIAGFSGGGYFTAQAVEKDK-RIKAWIASTPIYDVAEVFRISFSTALKAPKTILKWG 286 (405)
T ss_dssp THHHHHHHHHHCCCSS----SCEEEEEETTHHHHHHHHHTTCT-TCCEEEEESCCSCHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHhcC----CCEEEEEEChhHHHHHHHHhcCc-CeEEEEEecCcCCHHHHHHHhhhhhhhCcHHHHHHH
Confidence 4788999999986653 78999999999999999999988 89999999999987544311 00111000000
Q ss_pred ccC-------------ccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 726 YGS-------------KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 726 ~~~-------------~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
... .....+...........+...++...+.++++|+|++||++|..||++++.++++.++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~v~~~~~~~l~~~l~ 360 (405)
T 3fnb_A 287 SKLVTSVNKVAEVNLNKYAWQFGQVDFITSVNEVLEQAQIVDYNKIDVPSLFLVGAGEDSELMRQSQVLYDNFK 360 (405)
T ss_dssp -----CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHHHCCCCCGGGCCSCEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHhhccchhHHHHHHHhhhhcCCCCHHHHHHHHHHhhcccCHhhCCCCEEEEecCCCcCCChHHHHHHHHHhc
Confidence 000 0000001111112223344455555578899999999999999999999999999885
|
| >3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration switch protein, hydrolase ACTI lyase; 2.20A {Vibrio vulnificus} PDB: 3our_A | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-17 Score=177.62 Aligned_cols=199 Identities=14% Similarity=0.125 Sum_probs=132.3
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~ 651 (789)
+|..+.++++.|. ..++.|+||++||.++.. ...+......|+++||.|+++|+|| +|.+........ .
T Consensus 176 ~g~~l~~~~~~P~---~~~~~P~vv~~hG~~~~~-~~~~~~~~~~l~~~G~~V~~~D~~G---~G~s~~~~~~~~----~ 244 (415)
T 3mve_A 176 EKGKITAHLHLTN---TDKPHPVVIVSAGLDSLQ-TDMWRLFRDHLAKHDIAMLTVDMPS---VGYSSKYPLTED----Y 244 (415)
T ss_dssp SSSEEEEEEEESC---SSSCEEEEEEECCTTSCG-GGGHHHHHHTTGGGTCEEEEECCTT---SGGGTTSCCCSC----T
T ss_pred CCEEEEEEEEecC---CCCCCCEEEEECCCCccH-HHHHHHHHHHHHhCCCEEEEECCCC---CCCCCCCCCCCC----H
Confidence 6788999999997 356789999999976531 2334445677889999999999998 444432111111 1
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhh--hcCCCCCcchhhhhccCc
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM--VGTTDIPDWCYVESYGSK 729 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~--~~~~~~~~~~~~~~~~~~ 729 (789)
.....++++++...+.+|.++|+|+|||+||++++.++..+|++++++|+.+|+.+.... ......+. .+...+..
T Consensus 245 ~~~~~~v~~~l~~~~~vd~~~i~l~G~S~GG~~a~~~a~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 322 (415)
T 3mve_A 245 SRLHQAVLNELFSIPYVDHHRVGLIGFRFGGNAMVRLSFLEQEKIKACVILGAPIHDIFASPQKLQQMPK-MYLDVLAS- 322 (415)
T ss_dssp THHHHHHHHHGGGCTTEEEEEEEEEEETHHHHHHHHHHHHTTTTCCEEEEESCCCSHHHHCHHHHTTSCH-HHHHHHHH-
T ss_pred HHHHHHHHHHHHhCcCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEECCccccccccHHHHHHhHH-HHHHHHHH-
Confidence 233456788887777788999999999999999999999889999999999998642111 00001111 01111100
Q ss_pred cccccCCCC--Chh-hHHHHHhcCcccc----CCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 730 GKDSFTESP--SVE-DLTRFHSKSPISH----ISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 730 ~~~~~~~~~--~~~-~~~~~~~~sp~~~----~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
..+.. ... ....+..+++... +.++++|+|++||++|.+||++++..+++..++
T Consensus 323 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp~~~~~~l~~~~~~ 383 (415)
T 3mve_A 323 ----RLGKSVVDIYSLSGQMAAWSLKVQGFLSSRKTKVPILAMSLEGDPVSPYSDNQMVAFFSTY 383 (415)
T ss_dssp ----HTTCSSBCHHHHHHHGGGGCTTTTTTTTSSCBSSCEEEEEETTCSSSCHHHHHHHHHTBTT
T ss_pred ----HhCCCccCHHHHHHHHhhcCcccccccccCCCCCCEEEEEeCCCCCCCHHHHHHHHHhCCC
Confidence 01111 111 1122233333322 468899999999999999999999999886654
|
| >3iii_A COCE/NOND family hydrolase; structural genomics, center for structural genomi infectious diseases, csgid; HET: MSE PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6.3e-17 Score=182.58 Aligned_cols=208 Identities=12% Similarity=0.096 Sum_probs=147.0
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch--h------------------h-HHHHHHHHHCCcEEE
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS--S------------------Y-SKSLAFLSSVGYSLL 625 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~--~------------------~-~~~~~~la~~Gy~V~ 625 (789)
.++..||.+|.+.++.|++ .+++|+||+.||.+...... . | ....+.|+++||+|+
T Consensus 45 ~i~~~DG~~L~a~l~~P~~---~~~~P~vl~~~pyg~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~~Gy~vv 121 (560)
T 3iii_A 45 TVEMRDGEKLYINIFRPNK---DGKFPVVMSADTYGKDNKPKITNMGALWPTLGTIPTSSFTPEESPDPGFWVPNDYVVV 121 (560)
T ss_dssp EEECTTSCEEEEEEEECSS---SSCEEEEEEEESSCTTCCCC--CHHHHSGGGCCCCCCTTCCTTSCCHHHHGGGTCEEE
T ss_pred EEECCCCcEEEEEEEecCC---CCCCCEEEEecCCCCCcccccccccccccccccccccccccccCCCHHHHHhCCCEEE
Confidence 5677899999999999973 57899999999855532100 0 0 012578999999999
Q ss_pred EEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 626 IVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 626 ~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
.+|+||+++.+..+. .++..+.+|+.++++|+.+++++| .||+++|+|+||++++.+|+..|+.++|+|+.+|+
T Consensus 122 ~~D~RG~G~S~G~~~-----~~~~~~~~D~~~~i~~l~~~~~~~-~~igl~G~S~GG~~al~~a~~~p~~l~aiv~~~~~ 195 (560)
T 3iii_A 122 KVALRGSDKSKGVLS-----PWSKREAEDYYEVIEWAANQSWSN-GNIGTNGVSYLAVTQWWVASLNPPHLKAMIPWEGL 195 (560)
T ss_dssp EEECTTSTTCCSCBC-----TTSHHHHHHHHHHHHHHHTSTTEE-EEEEEEEETHHHHHHHHHHTTCCTTEEEEEEESCC
T ss_pred EEcCCCCCCCCCccc-----cCChhHHHHHHHHHHHHHhCCCCC-CcEEEEccCHHHHHHHHHHhcCCCceEEEEecCCc
Confidence 999999777665442 344567899999999999988777 89999999999999999999989999999999999
Q ss_pred cchhh-hhcCCCCCcchhhh--------hccC-cccc----ccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCC
Q 003886 706 CNLAL-MVGTTDIPDWCYVE--------SYGS-KGKD----SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL 771 (789)
Q Consensus 706 ~~~~~-~~~~~~~~~~~~~~--------~~~~-~~~~----~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~ 771 (789)
.|+.. ...........+.. .... ...+ .+...+..+ +.+...++ .+++|++|+|+++|-.|.
T Consensus 196 ~d~~~~~~~~gG~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~hp~~d--~~W~~~~~--~~~~I~vPvl~v~Gw~D~ 271 (560)
T 3iii_A 196 NDMYREVAFHGGIPDTGFYRFWTQGIFARWTDNPNIEDLIQAQQEHPLFD--DFWKQRQV--PLSQIKTPLLTCASWSTQ 271 (560)
T ss_dssp CBHHHHTTEETTEECCSHHHHHHHHHHHHTTTCTTBCCHHHHHHHCCSSC--HHHHTTBC--CGGGCCSCEEEEEEGGGT
T ss_pred ccccccceecCCCCchhHHHHHHhhhccccccccchHHHHHHHHHCCCcc--hHhhccCC--chhhCCCCEEEeCCcCCC
Confidence 99753 11111111110000 0000 0000 011111111 23444444 678999999999999998
Q ss_pred CCChHHHHHHHHHCCC
Q 003886 772 RVPVSNGLQVIYHIPF 787 (789)
Q Consensus 772 ~vp~~~~~~l~~~l~~ 787 (789)
.+...++.+.|++|+.
T Consensus 272 ~~~~~g~l~~y~~l~~ 287 (560)
T 3iii_A 272 GLHNRGSFEGFKQAAS 287 (560)
T ss_dssp TTTHHHHHHHHHHCCC
T ss_pred cccchhHHHHHHhccc
Confidence 7888888999998864
|
| >3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like hydrolase, structural genomi center for structural genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.2e-16 Score=153.41 Aligned_cols=162 Identities=19% Similarity=0.229 Sum_probs=127.1
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH--HHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK--SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~--~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
.+|.+++++++.|.+ +.|+||++||++.+ ...|.. ....|+++||.|+++|+|| +|.+..... ...
T Consensus 11 ~~g~~l~~~~~~~~~-----~~~~vv~~hG~~~~--~~~~~~~~~~~~l~~~G~~v~~~d~~g---~g~s~~~~~--~~~ 78 (207)
T 3bdi_A 11 VNGTRVFQRKMVTDS-----NRRSIALFHGYSFT--SMDWDKADLFNNYSKIGYNVYAPDYPG---FGRSASSEK--YGI 78 (207)
T ss_dssp ETTEEEEEEEECCTT-----CCEEEEEECCTTCC--GGGGGGGTHHHHHHTTTEEEEEECCTT---STTSCCCTT--TCC
T ss_pred eCCcEEEEEEEeccC-----CCCeEEEECCCCCC--ccccchHHHHHHHHhCCCeEEEEcCCc---ccccCcccC--CCC
Confidence 478899999998863 67899999997764 456777 7889999999999999998 444421000 112
Q ss_pred cc-cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhcc
Q 003886 649 SQ-DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 727 (789)
Q Consensus 649 ~~-~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~ 727 (789)
.. +.+++.+.+..++++ ++.++++++|||+||.+++.++.++|++++++|+.+|..... +
T Consensus 79 ~~~~~~~~~~~~~~~~~~--~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~------------~----- 139 (207)
T 3bdi_A 79 DRGDLKHAAEFIRDYLKA--NGVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPAWVES------------L----- 139 (207)
T ss_dssp TTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCGG------------G-----
T ss_pred CcchHHHHHHHHHHHHHH--cCCCceEEEEECccHHHHHHHHHhCchhheEEEEeCCccccc------------h-----
Confidence 23 578888888888876 456799999999999999999999999999999998863110 0
Q ss_pred CccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 728 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
...+.++++|+|+++|++|..+|++.+.++++.+++
T Consensus 140 ------------------------~~~~~~~~~p~l~i~g~~D~~~~~~~~~~~~~~~~~ 175 (207)
T 3bdi_A 140 ------------------------KGDMKKIRQKTLLVWGSKDHVVPIALSKEYASIISG 175 (207)
T ss_dssp ------------------------HHHHTTCCSCEEEEEETTCTTTTHHHHHHHHHHSTT
T ss_pred ------------------------hHHHhhccCCEEEEEECCCCccchHHHHHHHHhcCC
Confidence 123456789999999999999999999999998854
|
| >3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta hydrolase, alternative splicing, hydrolase, mitochondrion, polymorphism, serine esterase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.6e-17 Score=178.69 Aligned_cols=194 Identities=12% Similarity=0.113 Sum_probs=127.6
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHH
Q 003886 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 654 (789)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D 654 (789)
.+.++++.|+ ..++.|+||++||+++.. +......|+++||.|+++|+||.++... ......++|
T Consensus 160 ~l~~~l~~P~---~~~~~P~Vv~lhG~~~~~----~~~~a~~La~~Gy~Vla~D~rG~~~~~~--------~~~~~~~~d 224 (446)
T 3hlk_A 160 RVRGTLFLPP---EPGPFPGIVDMFGTGGGL----LEYRASLLAGKGFAVMALAYYNYEDLPK--------TMETLHLEY 224 (446)
T ss_dssp TEEEEEEECS---SSCCBCEEEEECCSSCSC----CCHHHHHHHTTTCEEEEECCSSSTTSCS--------CCSEEEHHH
T ss_pred eEEEEEEeCC---CCCCCCEEEEECCCCcch----hhHHHHHHHhCCCEEEEeccCCCCCCCc--------chhhCCHHH
Confidence 5899999997 346789999999987642 2234778999999999999999544322 223356899
Q ss_pred HHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhh---cCCCCCcchh---hhhccC
Q 003886 655 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV---GTTDIPDWCY---VESYGS 728 (789)
Q Consensus 655 ~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~---~~~~~~~~~~---~~~~~~ 728 (789)
+.++++++.++..+|.++|+|+|||+||++++.++.++|+ ++++|+.+|........ .....+...+ ......
T Consensus 225 ~~~a~~~l~~~~~vd~~~i~l~G~S~GG~lAl~~A~~~p~-v~a~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (446)
T 3hlk_A 225 FEEAMNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKG-ITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVTK 303 (446)
T ss_dssp HHHHHHHHHTSTTBCCSSEEEEEETHHHHHHHHHHHHCSC-EEEEEEESCCSBCCSSEEEETTEEECCCCBCGGGCEECS
T ss_pred HHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHHhCCC-ceEEEEEcCcccccCCCccccCccCCccccchhcccccc
Confidence 9999999999988899999999999999999999999987 99999998865321100 0000000000 000000
Q ss_pred ccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHH-HHHHHHCC
Q 003886 729 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNG-LQVIYHIP 786 (789)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~-~~l~~~l~ 786 (789)
.....+... ...............+.++++|+|++||++|.++|..+. ..+++.|+
T Consensus 304 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~vp~~~~~~~~~~~l~ 360 (446)
T 3hlk_A 304 DGYADIVDV--LNSPLEGPDQKSFIPVERAESTFLFLVGQDDHNWKSEFYANEACKRLQ 360 (446)
T ss_dssp SSCEECTTC--BCCTTSGGGGGGBCCGGGCCSEEEEEEETTCCSSCHHHHHHHHHHHHH
T ss_pred chHHHHHHH--HhchhhccccccccCHHHCCCCEEEEEeCCCCCcChHHHHHHHHHHHH
Confidence 000000000 000000011122234678899999999999999999554 57776654
|
| >3fcx_A FGH, esterase D, S-formylglutathione hydrolase; retinoblastoma, genetic marker, cytoplasm, cytoplasmic vesicle, polymorphism, serine esterase; 1.50A {Homo sapiens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-17 Score=172.66 Aligned_cols=194 Identities=14% Similarity=0.138 Sum_probs=122.5
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHH---HHHHHHCCcEEEEEcC--CCCCCCCch------
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS---LAFLSSVGYSLLIVNY--RGSLGFGEE------ 638 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~---~~~la~~Gy~V~~~d~--rGs~G~G~~------ 638 (789)
...|..+...++.|++++ .+++|+||++||+++. ...|... .+.++++||.|+++|+ ||.++.|..
T Consensus 24 ~~~~~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~--~~~~~~~~~~~~~~~~~g~~vv~~d~~~rG~~~~~~~~~~~~g 100 (282)
T 3fcx_A 24 VELNCKMKFAVYLPPKAE-TGKCPALYWLSGLTCT--EQNFISKSGYHQSASEHGLVVIAPDTSPRGCNIKGEDESWDFG 100 (282)
T ss_dssp TTTTEEEEEEEEECGGGG-TSCEEEEEEECCTTCC--SHHHHHHSCCHHHHHHHTCEEEEECSCSSCCCC--------CC
T ss_pred hhcCCeeEEEEEcCCCCC-CCCCCEEEEEcCCCCC--ccchhhcchHHHHhhcCCeEEEEeccccCcccccccccccccc
Confidence 446788999999998543 3689999999998775 3344433 5678899999999999 876654432
Q ss_pred ----hhccCCC-CCC--cccHHHHH-HHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh
Q 003886 639 ----ALQSLPG-KVG--SQDVNDVL-TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (789)
Q Consensus 639 ----~~~~~~~-~~~--~~~~~D~~-~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~ 710 (789)
+...... .+. .....++. ++++++.++..+|++||+|+|+|+||++++.++.++|++|+++|+.+|+.+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~~~~~~~ 180 (282)
T 3fcx_A 101 TGAGFYVDATEDPWKTNYRMYSYVTEELPQLINANFPVDPQRMSIFGHSMGGHGALICALKNPGKYKSVSAFAPICNPVL 180 (282)
T ss_dssp CCCCTTCBCCSTTHHHHCBHHHHHHTHHHHHHHHHSSEEEEEEEEEEETHHHHHHHHHHHTSTTTSSCEEEESCCCCGGG
T ss_pred CCcccccccCcccccchhhHHHHHHHHHHHHHHHHcCCCccceEEEEECchHHHHHHHHHhCcccceEEEEeCCccCccc
Confidence 1111110 000 01123333 444555445447889999999999999999999999999999999999887432
Q ss_pred hhcCCCCCcch---hhhhccCccccccCCCCChhhHHHHHhcCcccc---CCCCCCCEEEEEeCCCCCCChHH--HHHHH
Q 003886 711 MVGTTDIPDWC---YVESYGSKGKDSFTESPSVEDLTRFHSKSPISH---ISKVKTPTIFLLGAQDLRVPVSN--GLQVI 782 (789)
Q Consensus 711 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~---~~~i~~P~Lii~G~~D~~vp~~~--~~~l~ 782 (789)
. .|. +...++. ....+...+|... +.++++|+|++||++|.+||..+ +.+++
T Consensus 181 ~-------~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~ 240 (282)
T 3fcx_A 181 C-------PWGKKAFSGYLGT-------------DQSKWKAYDATHLVKSYPGSQLDILIDQGKDDQFLLDGQLLPDNFI 240 (282)
T ss_dssp S-------HHHHHHHHHHHC----------------CCGGGGCHHHHHTTCC---CCEEEEEETTCHHHHTTSSCHHHHH
T ss_pred C-------chhHHHHHHhcCC-------------chhhhhhcCHHHHHHhcccCCCcEEEEcCCCCcccccchhhHHHHH
Confidence 1 111 0011111 0011223344333 44558999999999999997655 44666
Q ss_pred HHCC
Q 003886 783 YHIP 786 (789)
Q Consensus 783 ~~l~ 786 (789)
++|+
T Consensus 241 ~~l~ 244 (282)
T 3fcx_A 241 AACT 244 (282)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
|
| >3h04_A Uncharacterized protein; protein with unknown function, structural genomics, MCSG, PS protein structure initiative; 1.90A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.2e-16 Score=158.92 Aligned_cols=199 Identities=14% Similarity=0.202 Sum_probs=129.2
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CchhhH-HHHHHHHHCCcEEEEEcCCCCCCCCchhhccCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 644 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~-~~~~~~-~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~ 644 (789)
.+...||..+++.++.|. ..++.|+||++||++... ....|. .....|++. |.|+++|+||++...
T Consensus 7 ~~~~~dg~~l~~~~~~p~---~~~~~~~vv~~HG~~~~~~~~~~~~~~~~~~l~~~-~~v~~~d~~~~~~~~-------- 74 (275)
T 3h04_A 7 KVITKDAFALPYTIIKAK---NQPTKGVIVYIHGGGLMFGKANDLSPQYIDILTEH-YDLIQLSYRLLPEVS-------- 74 (275)
T ss_dssp EEECTTSCEEEEEEECCS---SSSCSEEEEEECCSTTTSCCTTCSCHHHHHHHTTT-EEEEEECCCCTTTSC--------
T ss_pred EEecCCcEEEEEEEEccC---CCCCCCEEEEEECCcccCCchhhhHHHHHHHHHhC-ceEEeeccccCCccc--------
Confidence 456678999999999986 445789999999987322 222333 455667666 999999999853221
Q ss_pred CCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcc----
Q 003886 645 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDW---- 720 (789)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~---- 720 (789)
.....+|+.++++++.++ ++.++++|+|||+||++++.++.+ ++++++|+.+|..++............
T Consensus 75 ---~~~~~~d~~~~~~~l~~~--~~~~~i~l~G~S~Gg~~a~~~a~~--~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 147 (275)
T 3h04_A 75 ---LDCIIEDVYASFDAIQSQ--YSNCPIFTFGRSSGAYLSLLIARD--RDIDGVIDFYGYSRINTEPFKTTNSYYAKIA 147 (275)
T ss_dssp ---HHHHHHHHHHHHHHHHHT--TTTSCEEEEEETHHHHHHHHHHHH--SCCSEEEEESCCSCSCSHHHHSCCHHHHHHH
T ss_pred ---cchhHHHHHHHHHHHHhh--CCCCCEEEEEecHHHHHHHHHhcc--CCccEEEeccccccccccccccccchhhccc
Confidence 123478999999999988 678899999999999999999998 789999999998865211100000000
Q ss_pred -----hhhhhccCccccccCCCCChhhHHH-------------HHh-------cC-ccccCCCCCCCEEEEEeCCCCCCC
Q 003886 721 -----CYVESYGSKGKDSFTESPSVEDLTR-------------FHS-------KS-PISHISKVKTPTIFLLGAQDLRVP 774 (789)
Q Consensus 721 -----~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-------~s-p~~~~~~i~~P~Lii~G~~D~~vp 774 (789)
.....+.. ............... +.. .. ....+.+++ |+|++||++|..||
T Consensus 148 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-P~lii~G~~D~~~~ 224 (275)
T 3h04_A 148 QSINETMIAQLTS--PTPVVQDQIAQRFLIYVYARGTGKWINMINIADYTDSKYNIAPDELKTLP-PVFIAHCNGDYDVP 224 (275)
T ss_dssp TTSCHHHHHTTSC--SSCCSSCSSGGGHHHHHHHHHHTCHHHHHCCSCTTSGGGSCCHHHHTTCC-CEEEEEETTCSSSC
T ss_pred ccchHHHHhcccC--CCCcCCCccccchhhhhhhhhcCchHHhhccccccccccccccchhccCC-CEEEEecCCCCCCC
Confidence 00000000 000000000000000 000 00 011136677 99999999999999
Q ss_pred hHHHHHHHHHCCC
Q 003886 775 VSNGLQVIYHIPF 787 (789)
Q Consensus 775 ~~~~~~l~~~l~~ 787 (789)
++++.++++.+++
T Consensus 225 ~~~~~~~~~~~~~ 237 (275)
T 3h04_A 225 VEESEHIMNHVPH 237 (275)
T ss_dssp THHHHHHHTTCSS
T ss_pred hHHHHHHHHhcCC
Confidence 9999999998865
|
| >3nuz_A Putative acetyl xylan esterase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.30A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-17 Score=178.61 Aligned_cols=141 Identities=11% Similarity=0.005 Sum_probs=105.2
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc------------hhhH----HHHHHHHHCCcEEEEEcCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL------------SSYS----KSLAFLSSVGYSLLIVNYR 630 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~------------~~~~----~~~~~la~~Gy~V~~~d~r 630 (789)
.+...+|..+.++++.|++. .++.|+||++||++++... ..|. ...+.|+++||+|+++|+|
T Consensus 96 ~~~~~~g~~l~~~l~~P~~~--~~~~P~Vv~~HG~g~~~~~~~~~~g~~~~~~~~y~~~~~~~a~~la~~Gy~Vl~~D~r 173 (398)
T 3nuz_A 96 EFYPLPKCVSTFLVLIPDNI--NKPVPAILCIPGSGGNKEGLAGEPGIAPKLNDRYKDPKLTQALNFVKEGYIAVAVDNP 173 (398)
T ss_dssp EECCSTTBCEEEEEEEESSC--CSCEEEEEEECCTTCCHHHHHTCCCSSSTTCCSTTCTTTCHHHHHHTTTCEEEEECCT
T ss_pred EEEcCCCcEEEEEEEeCCCC--CCCccEEEEEcCCCCCcccccccccccccccccccchHHHHHHHHHHCCCEEEEecCC
Confidence 56677899999999999742 5689999999997663210 0111 4678999999999999999
Q ss_pred CCCCCCchhhcc----------------CCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCC
Q 003886 631 GSLGFGEEALQS----------------LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 694 (789)
Q Consensus 631 Gs~G~G~~~~~~----------------~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~ 694 (789)
|.++.+...... ....++...+.|+.++++++.+++.+|.+||+|+|||+||++++.+++.. +
T Consensus 174 G~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~ald~l~~~~~vd~~rI~v~G~S~GG~~a~~~aa~~-~ 252 (398)
T 3nuz_A 174 AAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPMMVLGTLD-T 252 (398)
T ss_dssp TSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSSEEEEEEEEEEEGGGHHHHHHHHHHC-T
T ss_pred CCCccccccccccccccchhhhhhHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCCCCeEEEEEECHhHHHHHHHHhcC-C
Confidence 855443222100 11122233457999999999999889999999999999999999988864 5
Q ss_pred ceeEEEEeCCccchhh
Q 003886 695 KFVAAAARNPLCNLAL 710 (789)
Q Consensus 695 ~~~a~v~~~pv~~~~~ 710 (789)
+++++|+.++++.+..
T Consensus 253 ~i~a~v~~~~~~~~~~ 268 (398)
T 3nuz_A 253 SIYAFVYNDFLCQTQE 268 (398)
T ss_dssp TCCEEEEESCBCCHHH
T ss_pred cEEEEEEecccccchh
Confidence 8999999877766543
|
| >3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint center for structural genomics, JCSG; HET: MSE; 1.90A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.3e-17 Score=176.12 Aligned_cols=207 Identities=11% Similarity=0.027 Sum_probs=129.8
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc------------hhhH----HHHHHHHHCCcEEEEEcCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL------------SSYS----KSLAFLSSVGYSLLIVNYR 630 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~------------~~~~----~~~~~la~~Gy~V~~~d~r 630 (789)
.+...+|..+.++++.|++. .++.|+||++||.++.... ..|. ...+.|+++||+|+++|+|
T Consensus 91 ~~~~~~g~~l~~~l~~P~~~--~~~~P~Vl~~HG~g~~~~~~~~~~~~~~~~~~~y~~~~~~~a~~la~~G~~Vl~~D~r 168 (391)
T 3g8y_A 91 EFYPFPKSVSTFLVLKPEHL--KGAVPGVLCIPGSGRTKEGLVGEPGICDKLTEDYNNPKVSMALNMVKEGYVAVAVDNA 168 (391)
T ss_dssp EECCSTTCCEEEEEEEETTC--CSCEEEEEEECCTTCCHHHHTTCCCSSGGGCCCTTSTTTCHHHHHHTTTCEEEECCCT
T ss_pred EEEcCCCCEEEEEEEeCCCC--CCCCCEEEEeCCCCCCchhhccccccccccchhhcchHHHHHHHHHHCCCEEEEecCC
Confidence 56677899999999999742 5689999999997653210 0112 4678899999999999999
Q ss_pred CCCCCCchhhccC----------------CCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCC
Q 003886 631 GSLGFGEEALQSL----------------PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 694 (789)
Q Consensus 631 Gs~G~G~~~~~~~----------------~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~ 694 (789)
|.++.+....... ...++...+.|+.++++++.+++.+|.+||+|+|||+||++++.+++. ++
T Consensus 169 g~G~s~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~a~d~l~~~~~vd~~rI~v~G~S~GG~~al~~a~~-~~ 247 (391)
T 3g8y_A 169 AAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPMMVLGVL-DK 247 (391)
T ss_dssp TSGGGCSSGGGTTTTSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCTTEEEEEEEEEEEGGGHHHHHHHHHH-CT
T ss_pred CccccCCcccccccccchHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEChhHHHHHHHHHc-CC
Confidence 8554432211000 001111223789999999999988999999999999999999999886 46
Q ss_pred ceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCC-CCCEEEEEeCCCCCC
Q 003886 695 KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRV 773 (789)
Q Consensus 695 ~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~G~~D~~v 773 (789)
+++++|+.++++.+..........+..-...+.. ....+ .+.. ....+....+..+ ..|+||+||++|..|
T Consensus 248 ~i~a~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~--~p~~-----~~~~d~~~~~~~~ap~P~LiihG~~D~~v 319 (391)
T 3g8y_A 248 DIYAFVYNDFLCQTQERAVVMTKPDKENRRPFPN-SIRHL--IPGY-----WRYFNFPDVVASLAPRPIIFTEGGLDRDF 319 (391)
T ss_dssp TCCEEEEESCBCCHHHHHHHCCCCCTTSCCCCSS-CGGGC--CTTG-----GGTCCHHHHHHTTTTSCEEECSCBCHHHH
T ss_pred ceeEEEEccCCCCcccchhhcccccccccccccc-cHHHh--CccH-----HhhCCHHHHHHhhcCCCEEEEcCCccHHH
Confidence 8999999998887643211000000000000000 00000 0000 0111111111112 369999999999988
Q ss_pred ChHHHHHHHHHCC
Q 003886 774 PVSNGLQVIYHIP 786 (789)
Q Consensus 774 p~~~~~~l~~~l~ 786 (789)
+...++++.+.
T Consensus 320 --~~~~~~~~~~g 330 (391)
T 3g8y_A 320 --RLVQSAYAASG 330 (391)
T ss_dssp --HHHHHHHHHTT
T ss_pred --HHHHHHHHHcC
Confidence 66777777654
|
| >1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP: c.69.1.16 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-16 Score=161.23 Aligned_cols=151 Identities=17% Similarity=0.161 Sum_probs=120.3
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHH
Q 003886 577 EAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL 656 (789)
Q Consensus 577 ~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~ 656 (789)
.+.++.|... ..++.|+||++||.+.. ...|......|+++||.|+++|+||.+ ... .....|+.
T Consensus 40 ~~~l~~p~~~-~~~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~g---~~~---------~~~~~d~~ 104 (262)
T 1jfr_A 40 GGTIYYPTST-ADGTFGAVVISPGFTAY--QSSIAWLGPRLASQGFVVFTIDTNTTL---DQP---------DSRGRQLL 104 (262)
T ss_dssp CEEEEEESCC-TTCCEEEEEEECCTTCC--GGGTTTHHHHHHTTTCEEEEECCSSTT---CCH---------HHHHHHHH
T ss_pred ceeEEecCCC-CCCCCCEEEEeCCcCCC--chhHHHHHHHHHhCCCEEEEeCCCCCC---CCC---------chhHHHHH
Confidence 3567777632 24678999999997664 456667788899999999999999843 221 12356888
Q ss_pred HHHHHHHH----cCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCcccc
Q 003886 657 TAIDHVID----MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 732 (789)
Q Consensus 657 ~~i~~l~~----~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (789)
++++++.+ ...++.++++|+|||+||++++.++.++|+ ++++|+.+|...
T Consensus 105 ~~~~~l~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~p~~~------------------------- 158 (262)
T 1jfr_A 105 SALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTS-LKAAIPLTGWNT------------------------- 158 (262)
T ss_dssp HHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS-------------------------
T ss_pred HHHHHHHhccccccccCcccEEEEEEChhHHHHHHHHhcCcc-ceEEEeecccCc-------------------------
Confidence 99999987 344678899999999999999999999987 899999877431
Q ss_pred ccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHH-HHHHHHHCCC
Q 003886 733 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSN-GLQVIYHIPF 787 (789)
Q Consensus 733 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~-~~~l~~~l~~ 787 (789)
...+.++++|+|++||++|..+|++. +.++++.+++
T Consensus 159 -------------------~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~l~~ 195 (262)
T 1jfr_A 159 -------------------DKTWPELRTPTLVVGADGDTVAPVATHSKPFYESLPG 195 (262)
T ss_dssp -------------------CCCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHHSCT
T ss_pred -------------------cccccccCCCEEEEecCccccCCchhhHHHHHHHhhc
Confidence 12456778999999999999999998 9999999865
|
| >4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-15 Score=156.46 Aligned_cols=122 Identities=16% Similarity=0.338 Sum_probs=93.7
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~ 651 (789)
+|..+...++.+.. ..++.|+||++||.+++ ...|......|+++||.|+++|+|| +|.+... ......
T Consensus 28 ~~~~~~~~~~~~~~--~~~~~p~vv~~hG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G---~G~s~~~----~~~~~~ 96 (315)
T 4f0j_A 28 QGQPLSMAYLDVAP--KKANGRTILLMHGKNFC--AGTWERTIDVLADAGYRVIAVDQVG---FCKSSKP----AHYQYS 96 (315)
T ss_dssp TTEEEEEEEEEECC--SSCCSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC----SSCCCC
T ss_pred CCCCeeEEEeecCC--CCCCCCeEEEEcCCCCc--chHHHHHHHHHHHCCCeEEEeecCC---CCCCCCC----CccccC
Confidence 44445544444321 34567999999997764 5578888899999999999999998 4444321 112446
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
++++.+.+..+++. ++.++++|+|||+||++++.++.++|++++++|+.+|..
T Consensus 97 ~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 149 (315)
T 4f0j_A 97 FQQLAANTHALLER--LGVARASVIGHSMGGMLATRYALLYPRQVERLVLVNPIG 149 (315)
T ss_dssp HHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSC
T ss_pred HHHHHHHHHHHHHH--hCCCceEEEEecHHHHHHHHHHHhCcHhhheeEEecCcc
Confidence 78888888888877 566799999999999999999999999999999999864
|
| >3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase, gibberellin signaling pathway, hydrolase, nucleus, hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp} PDB: 3ed1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=170.82 Aligned_cols=129 Identities=20% Similarity=0.243 Sum_probs=98.2
Q ss_pred eeecCCCeeEEEEEEe-cCCC--------------------CCCCCCcEEEEEcCCCCCCCch---hhHHHHHHHHHC-C
Q 003886 567 NLTKGAQKPFEAIFVS-SSHK--------------------KDCSCDPLIVVLHGGPHSVSLS---SYSKSLAFLSSV-G 621 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~-P~~~--------------------~~~~~~P~vv~~HGg~~~~~~~---~~~~~~~~la~~-G 621 (789)
.+...+| +.+.+|. |... ...++.|+||++|||++..... .|...+..|+++ |
T Consensus 68 ~~~~~~g--l~~~~~~~P~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Pvvv~~HGGg~~~g~~~~~~~~~~~~~la~~~g 145 (365)
T 3ebl_A 68 IIDQSVG--LEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSK 145 (365)
T ss_dssp EEETTTT--EEEEEEEEC----------------CGGGGSCCBSSCCEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHT
T ss_pred EecCCCC--ceEEEEeCCCccccccccccccccccccccCCCCCCcceEEEEEcCCccccCCCchhhHHHHHHHHHHHCC
Confidence 4556677 5666776 7642 2346789999999988643322 356677788875 9
Q ss_pred cEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcC----CCCCc-cEEEEEcCccHHHHHHHHHhCCC--
Q 003886 622 YSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG----LANPS-KVTVVGGSHGGFLTTHLIGQAPD-- 694 (789)
Q Consensus 622 y~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~----~~d~~-rv~l~G~S~GG~~a~~~~~~~p~-- 694 (789)
|+|+++|||+++++. ....++|+.++++|+.++. .+|++ ||+|+|+|+||++++.++.+.++
T Consensus 146 ~~Vv~~dyR~~p~~~-----------~~~~~~D~~~a~~~l~~~~~~~~~~d~~~ri~l~G~S~GG~la~~~a~~~~~~~ 214 (365)
T 3ebl_A 146 GVVVSVNYRRAPEHR-----------YPCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADEG 214 (365)
T ss_dssp SEEEEECCCCTTTSC-----------TTHHHHHHHHHHHHHHHCTTTEETTTTEEEEEEEEETHHHHHHHHHHHHHHHTT
T ss_pred CEEEEeeCCCCCCCC-----------CcHHHHHHHHHHHHHHhCchhhhCCCCCCcEEEEeeCccHHHHHHHHHHHHhcC
Confidence 999999999865432 1234789999999999764 58998 99999999999999999987655
Q ss_pred -ceeEEEEeCCccch
Q 003886 695 -KFVAAAARNPLCNL 708 (789)
Q Consensus 695 -~~~a~v~~~pv~~~ 708 (789)
+++++|+.+|+++.
T Consensus 215 ~~~~g~vl~~p~~~~ 229 (365)
T 3ebl_A 215 VKVCGNILLNAMFGG 229 (365)
T ss_dssp CCCCEEEEESCCCCC
T ss_pred CceeeEEEEccccCC
Confidence 79999999998864
|
| >3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal hydrolase; HET: PE4; 1.76A {Thermobifida alba} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-16 Score=164.62 Aligned_cols=148 Identities=19% Similarity=0.207 Sum_probs=121.0
Q ss_pred EEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHH
Q 003886 578 AIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT 657 (789)
Q Consensus 578 ~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~ 657 (789)
+.++.|.. ..+.|+||++||+++. ...|......|+++||.|+++|+||. |.+. ....+|+.+
T Consensus 85 ~~~~~p~~---~~~~p~vv~~HG~~~~--~~~~~~~~~~la~~G~~vv~~d~~g~---g~s~---------~~~~~d~~~ 147 (306)
T 3vis_A 85 GTIYYPRE---NNTYGAIAISPGYTGT--QSSIAWLGERIASHGFVVIAIDTNTT---LDQP---------DSRARQLNA 147 (306)
T ss_dssp EEEEEESS---CSCEEEEEEECCTTCC--HHHHHHHHHHHHTTTEEEEEECCSST---TCCH---------HHHHHHHHH
T ss_pred eEEEeeCC---CCCCCEEEEeCCCcCC--HHHHHHHHHHHHhCCCEEEEecCCCC---CCCc---------chHHHHHHH
Confidence 56777763 3378999999997654 55777788899999999999999983 3322 123578899
Q ss_pred HHHHHHHc------CCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccc
Q 003886 658 AIDHVIDM------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 731 (789)
Q Consensus 658 ~i~~l~~~------~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (789)
+++++.+. ..+|.++|+|+|||+||++++.++.++|+ ++++|+.+|...
T Consensus 148 ~~~~l~~~~~~~~~~~~~~~~v~l~G~S~GG~~a~~~a~~~p~-v~~~v~~~~~~~------------------------ 202 (306)
T 3vis_A 148 ALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD-LKAAIPLTPWHL------------------------ 202 (306)
T ss_dssp HHHHHHHTSCHHHHTTEEEEEEEEEEETHHHHHHHHHHHHCTT-CSEEEEESCCCS------------------------
T ss_pred HHHHHHhhcchhhhccCCcccEEEEEEChhHHHHHHHHhhCCC-eeEEEEeccccC------------------------
Confidence 99999887 66889999999999999999999999887 999999887432
Q ss_pred cccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChH-HHHHHHHHCCC
Q 003886 732 DSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVS-NGLQVIYHIPF 787 (789)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~-~~~~l~~~l~~ 787 (789)
...+.++++|+|++||++|..+|++ ++..+++.+++
T Consensus 203 --------------------~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~l~~ 239 (306)
T 3vis_A 203 --------------------NKSWRDITVPTLIIGAEYDTIASVTLHSKPFYNSIPS 239 (306)
T ss_dssp --------------------CCCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHTCCT
T ss_pred --------------------ccccccCCCCEEEEecCCCcccCcchhHHHHHHHhcc
Confidence 1235677899999999999999999 79999999876
|
| >3i6y_A Esterase APC40077; lipase, structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic hydrolase; HET: MSE; 1.75A {Oleispira antarctica} PDB: 3s8y_A | Back alignment and structure |
|---|
Probab=99.68 E-value=8.1e-17 Score=167.26 Aligned_cols=197 Identities=12% Similarity=0.102 Sum_probs=126.3
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH---HHHHHHHCCcEEEEEcCCCCC-----------CC
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSL-----------GF 635 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~Gy~V~~~d~rGs~-----------G~ 635 (789)
..+|..+...++.|++++..+++|+||++||+++.. ..|.. ....+++.||.|+++|.++.+ |.
T Consensus 25 ~~~g~~~~~~v~~P~~~~~~~~~p~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~pd~~~~g~~~~~~~~~~~G~ 102 (280)
T 3i6y_A 25 NTLNCAMRFAIYLPPQASTGAKVPVLYWLSGLTCSD--ENFMQKAGAQRLAAELGIAIVAPDTSPRGEGVADDEGYDLGQ 102 (280)
T ss_dssp TTTTEEEEEEEEECGGGGTTCCEEEEEEECCTTCCS--SHHHHHSCCHHHHHHHTCEEEEECSSCCSTTCCCCSSTTSST
T ss_pred cccCCeeEEEEEeCCCCCCCCCccEEEEecCCCCCh--hHHhhcccHHHHHhhCCeEEEEeCCcccccccCccccccccc
Confidence 456889999999998766678899999999987653 34433 345677889999999987421 11
Q ss_pred CchhhccCCC-CC-Cccc-HHHHH-HHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhh
Q 003886 636 GEEALQSLPG-KV-GSQD-VNDVL-TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711 (789)
Q Consensus 636 G~~~~~~~~~-~~-~~~~-~~D~~-~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~ 711 (789)
|..+...... .+ .... ...+. +.++++.++..+ .+|++|+|||+||++++.++.++|++|+++|+.+|+.++...
T Consensus 103 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~~~~~~~~ 181 (280)
T 3i6y_A 103 GAGFYVNATQAPWNRHYQMYDYVVNELPELIESMFPV-SDKRAIAGHSMGGHGALTIALRNPERYQSVSAFSPINNPVNC 181 (280)
T ss_dssp TCCTTCBCCSTTGGGTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEETHHHHHHHHHHHHCTTTCSCEEEESCCCCGGGS
T ss_pred CccccccccCCCccchhhHHHHHHHHHHHHHHHhCCC-CCCeEEEEECHHHHHHHHHHHhCCccccEEEEeCCccccccC
Confidence 2221111110 00 0011 22232 445555454323 589999999999999999999999999999999998875321
Q ss_pred hcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCC--CCEEEEEeCCCCCCChHH-HHHHHHHCC
Q 003886 712 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK--TPTIFLLGAQDLRVPVSN-GLQVIYHIP 786 (789)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~--~P~Lii~G~~D~~vp~~~-~~~l~~~l~ 786 (789)
... ...+...++. ....+...+|...+.+++ +|+||+||++|.+||.+. +.+++++|+
T Consensus 182 ~~~----~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~~l~ 242 (280)
T 3i6y_A 182 PWG----QKAFTAYLGK-------------DTDTWREYDASLLMRAAKQYVPALVDQGEADNFLAEQLKPEVLEAAAS 242 (280)
T ss_dssp HHH----HHHHHHHHCS-------------CGGGTGGGCHHHHHHHCSSCCCEEEEEETTCTTHHHHTCHHHHHHHHH
T ss_pred chH----HHHHHHhcCC-------------chHHHHhcCHHHHHHhcCCCccEEEEEeCCCccccchhhHHHHHHHHH
Confidence 100 0000111111 011233445555555554 899999999999999855 777777765
|
| >3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A* 3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=169.01 Aligned_cols=186 Identities=18% Similarity=0.253 Sum_probs=124.1
Q ss_pred eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-chhhHHHHHHHHH-CCcEEEEEcCCCCCCCCchhhccCCCCCCcccH
Q 003886 575 PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652 (789)
Q Consensus 575 ~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~-~~~~~~~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~ 652 (789)
.+.++++.|. ..++.|+||++|||++... ...+...+..|+. .||.|+++|||+++++. ....+
T Consensus 66 ~i~~~~~~p~---~~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~-----------~~~~~ 131 (322)
T 3fak_A 66 GCAAEWVRAP---GCQAGKAILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYRLAPEHP-----------FPAAV 131 (322)
T ss_dssp TEEEEEEECT---TCCTTCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTSEEEEECCCCTTTSC-----------TTHHH
T ss_pred CeEEEEEeCC---CCCCccEEEEEcCCccccCChHHHHHHHHHHHHhcCCEEEEEeCCCCCCCC-----------CCcHH
Confidence 3888899997 3467899999999886433 3355556667765 69999999999865432 23357
Q ss_pred HHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCc----eeEEEEeCCccchhhhhcCCCCCcchhhhhccC
Q 003886 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728 (789)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~----~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~ 728 (789)
+|+.++++|+.++ .+|++||+|+|+|+||++++.++.+.+++ ++++|+.+|++++.... ..+ ......
T Consensus 132 ~D~~~a~~~l~~~-~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~-----~~~--~~~~~~ 203 (322)
T 3fak_A 132 EDGVAAYRWLLDQ-GFKPQHLSISGDSAGGGLVLAVLVSARDQGLPMPASAIPISPWADMTCTN-----DSF--KTRAEA 203 (322)
T ss_dssp HHHHHHHHHHHHH-TCCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCC-----THH--HHTTTT
T ss_pred HHHHHHHHHHHHc-CCCCceEEEEEcCcCHHHHHHHHHHHHhcCCCCceEEEEECCEecCcCCC-----cCH--HHhCcc
Confidence 9999999999998 58999999999999999999999876654 99999999998753211 000 000000
Q ss_pred ccccccCCCCCh-hhHHHH--------HhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 729 KGKDSFTESPSV-EDLTRF--------HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 729 ~~~~~~~~~~~~-~~~~~~--------~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
..+...... .....| ...+|+...-....|+||+||+.|.. ..++.+++++|++
T Consensus 204 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~~--~~~~~~~~~~l~~ 266 (322)
T 3fak_A 204 ---DPMVAPGGINKMAARYLNGADAKHPYASPNFANLKGLPPLLIHVGRDEVL--LDDSIKLDAKAKA 266 (322)
T ss_dssp ---CCSCCSSHHHHHHHHHHTTSCTTCTTTCGGGSCCTTCCCEEEEEETTSTT--HHHHHHHHHHHHH
T ss_pred ---CcccCHHHHHHHHHHhcCCCCCCCcccCCCcccccCCChHhEEEcCcCcc--HHHHHHHHHHHHH
Confidence 000000000 000111 12344433222235999999999987 4678888887753
|
| >3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine structural genomics, center for structural genomics of INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.3e-16 Score=165.84 Aligned_cols=189 Identities=16% Similarity=0.206 Sum_probs=128.9
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CchhhHHHHHHHHH-CCcEEEEEcCCCCCCCCchhhccCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLP 644 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~-~~~~~~~~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~~ 644 (789)
++...+| .+.++++.|.+ ...|+||++|||++.. ....|...+..|++ .||.|+++|||+++++.
T Consensus 67 ~~~~~~g-~i~~~~~~p~~----~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~V~~~dyr~~p~~~-------- 133 (326)
T 3ga7_A 67 AVPTPYG-DVTTRLYSPQP----TSQATLYYLHGGGFILGNLDTHDRIMRLLARYTGCTVIGIDYSLSPQAR-------- 133 (326)
T ss_dssp EECCTTS-CEEEEEEESSS----SCSCEEEEECCSTTTSCCTTTTHHHHHHHHHHHCSEEEEECCCCTTTSC--------
T ss_pred EeecCCC-CeEEEEEeCCC----CCCcEEEEECCCCcccCChhhhHHHHHHHHHHcCCEEEEeeCCCCCCCC--------
Confidence 4556677 89999999963 2349999999988432 23456667778887 89999999999865532
Q ss_pred CCCCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhCCCc------eeEEEEeCCccchhhhhcCC
Q 003886 645 GKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPDK------FVAAAARNPLCNLALMVGTT 715 (789)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~p~~------~~a~v~~~pv~~~~~~~~~~ 715 (789)
....++|+.++++|+.++. .+|++||+|+|+|+||++++.++.+++++ ++++|+.+|+.+.....
T Consensus 134 ---~~~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~la~~~a~~~~~~~~~~~~~~~~vl~~~~~~~~~~~--- 207 (326)
T 3ga7_A 134 ---YPQAIEETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALASALWLRDKHIRCGNVIAILLWYGLYGLQDSV--- 207 (326)
T ss_dssp ---TTHHHHHHHHHHHHHHHTTTTTTCCCSEEEEEEETHHHHHHHHHHHHHHHHTCCSSEEEEEEEESCCCSCSCCH---
T ss_pred ---CCcHHHHHHHHHHHHHHhHHHhCCChhheEEEEeCHHHHHHHHHHHHHHhcCCCccCceEEEEeccccccCCCh---
Confidence 1234789999999999863 47899999999999999999999877654 99999999987642110
Q ss_pred CCCcchhhhhccCccccccCCCCChhhHHHHH---------hcCcc-----ccCCCCCCCEEEEEeCCCCCCChHHHHHH
Q 003886 716 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFH---------SKSPI-----SHISKVKTPTIFLLGAQDLRVPVSNGLQV 781 (789)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~sp~-----~~~~~i~~P~Lii~G~~D~~vp~~~~~~l 781 (789)
....+.. .+. ....+....+. ..+|. ..+.+..+|+||+||+.|.++ .++.++
T Consensus 208 ------~~~~~~~----~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~~--~~~~~~ 274 (326)
T 3ga7_A 208 ------SRRLFGG----AWD-GLTREDLDMYEKAYLRNDEDRESPWYCLFNNDLTRDVPPCFIASAEFDPLI--DDSRLL 274 (326)
T ss_dssp ------HHHHCCC----TTT-TCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCSSCCCCEEEEEETTCTTH--HHHHHH
T ss_pred ------hHhhhcC----CCC-CCCHHHHHHHHHHhCCCCCccCCcccCCCcchhhcCCCCEEEEecCcCcCH--HHHHHH
Confidence 0000000 000 00011111111 11222 124446679999999999998 478888
Q ss_pred HHHCCC
Q 003886 782 IYHIPF 787 (789)
Q Consensus 782 ~~~l~~ 787 (789)
+++|++
T Consensus 275 ~~~l~~ 280 (326)
T 3ga7_A 275 HQTLQA 280 (326)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887753
|
| >1vkh_A Putative serine hydrolase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae} SCOP: c.69.1.32 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=165.45 Aligned_cols=179 Identities=10% Similarity=0.139 Sum_probs=121.4
Q ss_pred CCCCcEEEEEcCCCCCC---CchhhHHHHHHH----HHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHH
Q 003886 589 CSCDPLIVVLHGGPHSV---SLSSYSKSLAFL----SSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDH 661 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~---~~~~~~~~~~~l----a~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~ 661 (789)
.++.|+||++|||++.. ....|......| ++.||.|+++|||++++.. ....++|+.+++++
T Consensus 38 ~~~~p~vv~lHGgg~~~g~~~~~~~~~~~~~L~~~a~~~g~~vi~~d~r~~~~~~-----------~~~~~~d~~~~~~~ 106 (273)
T 1vkh_A 38 QNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEIT-----------NPRNLYDAVSNITR 106 (273)
T ss_dssp TTCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTSC-----------TTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCcccCCcCChHHHHHHHHHHhhhhccCCcEEEEeecccCCCCC-----------CCcHHHHHHHHHHH
Confidence 56789999999987542 344677777777 5899999999999754311 12347899999999
Q ss_pred HHHcCCCCCccEEEEEcCccHHHHHHHHHhC-----------------CCceeEEEEeCCccchhhhhcCCCCCcchhhh
Q 003886 662 VIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-----------------PDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 724 (789)
Q Consensus 662 l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~-----------------p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~ 724 (789)
++++ ++.++++|+|||+||++++.++.++ |++++++|+.+|+.++................
T Consensus 107 l~~~--~~~~~i~l~G~S~GG~~a~~~a~~~~~~~p~~~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 184 (273)
T 1vkh_A 107 LVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTRL 184 (273)
T ss_dssp HHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHHHHHH
T ss_pred HHHh--CCcCcEEEEEeCHHHHHHHHHHHHhccCCccccccccccccCCcccceeeeecccccHHHhhhhcccHHHHHHH
Confidence 9987 6788999999999999999999885 78999999999988765443211100000111
Q ss_pred hccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 725 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.++. ..+.+. ........+.. .....+++|+|++||++|..||++++.++++.+++
T Consensus 185 ~~~~-~~~~~~--~~~~~~~~~~~----~~~~~~~~P~lii~G~~D~~vp~~~~~~~~~~l~~ 240 (273)
T 1vkh_A 185 AFPD-GIQMYE--EEPSRVMPYVK----KALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQD 240 (273)
T ss_dssp HCTT-CGGGCC--CCHHHHHHHHH----HHHHHHTCEEEEEEETTCSSCCTHHHHHHHHHHHH
T ss_pred Hhcc-cccchh--hcccccChhhh----hcccccCCCEEEEecCCcCCCChHHHHHHHHHHHh
Confidence 1100 000000 00011111100 01223788999999999999999999999988753
|
| >3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase, decarboxylase, sulfate elimination, terminal alkene production; 1.68A {Lyngbya majuscula 19L} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.4e-16 Score=158.30 Aligned_cols=121 Identities=20% Similarity=0.205 Sum_probs=94.6
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
.+|..++...+.|. +.|+||++||.+.+ ...|......|+++||.|+++|+|| +|.+.... .....
T Consensus 11 ~~g~~l~~~~~g~~------~~~~vv~~hG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~G---~G~s~~~~---~~~~~ 76 (286)
T 3qit_A 11 FGGNQICLCSWGSP------EHPVVLCIHGILEQ--GLAWQEVALPLAAQGYRVVAPDLFG---HGRSSHLE---MVTSY 76 (286)
T ss_dssp ETTEEEEEEEESCT------TSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCCS---SGGGC
T ss_pred cCCceEEEeecCCC------CCCEEEEECCCCcc--cchHHHHHHHhhhcCeEEEEECCCC---CCCCCCCC---CCCCc
Confidence 47888888777543 46899999997764 5577788889999999999999998 44443211 11234
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
..+++.+.+..+++. ++.+++.++|||+||++++.++.++|++++++|+.+|...
T Consensus 77 ~~~~~~~~~~~~~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~ 131 (286)
T 3qit_A 77 SSLTFLAQIDRVIQE--LPDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLP 131 (286)
T ss_dssp SHHHHHHHHHHHHHH--SCSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCC
T ss_pred CHHHHHHHHHHHHHh--cCCCCEEEEEeCHHHHHHHHHHHhChhhccEEEEecCCCC
Confidence 567777777777776 4568899999999999999999999999999999998754
|
| >3ls2_A S-formylglutathione hydrolase; psychrophilic organism; 2.20A {Pseudoalteromonas haloplanktis} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-16 Score=165.07 Aligned_cols=197 Identities=12% Similarity=0.092 Sum_probs=124.6
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH---HHHHHHHCCcEEEEEcCCCC--C---------CC
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGS--L---------GF 635 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~Gy~V~~~d~rGs--~---------G~ 635 (789)
...|.++...++.|++++..+++|+||++||+++. ...|.. ..+.+++.||.|+++|.++. . |.
T Consensus 23 ~~~g~~~~~~v~~P~~~~~~~~~P~vv~lHG~~~~--~~~~~~~~~~~~~~~~~g~~vv~~d~~~~g~~~~~~~~~~~g~ 100 (280)
T 3ls2_A 23 VSTHCTMRFAVFLPPGASESNKVPVLYWLSGLTCT--DENFMQKAGAFKKAAELGIAIVAPDTSPRGDNVPNEDSYDFAQ 100 (280)
T ss_dssp TTTTEEEEEEEEECTTCBTTBCEEEEEEECCTTCC--SHHHHHHSCCHHHHHHHTCEEEECCSSCCSTTSCCCSCTTSST
T ss_pred hhcCCceEEEEEcCCCCCCCCCcCEEEEeCCCCCC--hhhhhcchhHHHHHhhCCeEEEEeCCccccccccccccccccc
Confidence 34678899999999987667899999999998764 334433 34567788999999997632 1 22
Q ss_pred CchhhccCCC-CC-Cccc-HHHHH-HHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhh
Q 003886 636 GEEALQSLPG-KV-GSQD-VNDVL-TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711 (789)
Q Consensus 636 G~~~~~~~~~-~~-~~~~-~~D~~-~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~ 711 (789)
|..+...... .+ +... ...+. +.+.++.+...+ .+|++|+|||+||++++.++.++|++|+++++.+|+.++...
T Consensus 101 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~s~~~~~~~~ 179 (280)
T 3ls2_A 101 GAGFYVNATQAPYNTHFNMYDYVVNELPALIEQHFPV-TSTKAISGHSMGGHGALMIALKNPQDYVSASAFSPIVNPINC 179 (280)
T ss_dssp TCCTTCBCCSTTTTTTCBHHHHHHTHHHHHHHHHSSE-EEEEEEEEBTHHHHHHHHHHHHSTTTCSCEEEESCCSCGGGS
T ss_pred CCccccccccccccccccHHHHHHHHHHHHHHhhCCC-CCCeEEEEECHHHHHHHHHHHhCchhheEEEEecCccCcccC
Confidence 2222111111 01 1112 22222 334444444223 489999999999999999999999999999999998875321
Q ss_pred hcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCC----CCCEEEEEeCCCCCCChHH-HHHHHHHCC
Q 003886 712 VGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV----KTPTIFLLGAQDLRVPVSN-GLQVIYHIP 786 (789)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i----~~P~Lii~G~~D~~vp~~~-~~~l~~~l~ 786 (789)
... ...+...++. ....+...+|...+.++ .+|+||+||++|.+||.+. +.+++++|+
T Consensus 180 ~~~----~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~l~ 242 (280)
T 3ls2_A 180 PWG----VKAFTGYLGA-------------DKTTWAQYDSCKLMAKAEQSNYLPMLVSQGDADNFLDEQLKPQNLVAVAK 242 (280)
T ss_dssp HHH----HHHHHHHHCS-------------CGGGTGGGCHHHHHHTCCGGGCCCEEEEEETTCTTCCCCCCHHHHHHHHH
T ss_pred cch----hhHHHhhcCc-------------hHHHHHhcCHHHHHHhccccCCCcEEEEEeCCCcccCCchhHHHHHHHHH
Confidence 100 0000111111 01123344555555554 4599999999999999844 667776664
|
| >1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.67 E-value=7.5e-16 Score=161.99 Aligned_cols=205 Identities=12% Similarity=0.118 Sum_probs=127.3
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
+...+|..++++.+.|.+. ..++.|+||++||.+.+ ...|......|+++||.|+++|+||.. |.+... ...+
T Consensus 12 i~~~dG~~l~~~~~~p~~~-~~~~~~~VvllHG~g~~--~~~~~~~~~~L~~~G~~Vi~~D~rGh~--G~S~~~--~~~~ 84 (305)
T 1tht_A 12 LRVNNGQELHVWETPPKEN-VPFKNNTILIASGFARR--MDHFAGLAEYLSTNGFHVFRYDSLHHV--GLSSGS--IDEF 84 (305)
T ss_dssp EEETTTEEEEEEEECCCTT-SCCCSCEEEEECTTCGG--GGGGHHHHHHHHTTTCCEEEECCCBCC------------CC
T ss_pred EEcCCCCEEEEEEecCccc-CCCCCCEEEEecCCccC--chHHHHHHHHHHHCCCEEEEeeCCCCC--CCCCCc--ccce
Confidence 3455888999988877521 12356899999996653 557888888999999999999999842 433211 1122
Q ss_pred Cc-ccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchh--hh
Q 003886 648 GS-QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCY--VE 724 (789)
Q Consensus 648 ~~-~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~--~~ 724 (789)
.. ...+|+.++++++.+. +.++++|+||||||++++.++.+ | +++++|+.++..++...........+.. ..
T Consensus 85 ~~~~~~~D~~~~~~~l~~~---~~~~~~lvGhSmGG~iA~~~A~~-~-~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (305)
T 1tht_A 85 TMTTGKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISD-L-ELSFLITAVGVVNLRDTLEKALGFDYLSLPID 159 (305)
T ss_dssp CHHHHHHHHHHHHHHHHHT---TCCCEEEEEETHHHHHHHHHTTT-S-CCSEEEEESCCSCHHHHHHHHHSSCGGGSCGG
T ss_pred ehHHHHHHHHHHHHHHHhC---CCCceEEEEECHHHHHHHHHhCc-c-CcCEEEEecCchhHHHHHHHHhhhhhhhcchh
Confidence 21 1246788888888743 45789999999999999999987 7 8999999888754322110000000000 00
Q ss_pred hccCccccccCCCC--ChhhHHHHHhc------CccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 725 SYGSKGKDSFTESP--SVEDLTRFHSK------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 725 ~~~~~~~~~~~~~~--~~~~~~~~~~~------sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
.+.. ... +.... ........... +....+.++++|+|++||++|..+|++.+.++++.++
T Consensus 160 ~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G~~D~~vp~~~~~~l~~~i~ 227 (305)
T 1tht_A 160 ELPN-DLD-FEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIR 227 (305)
T ss_dssp GCCS-EEE-ETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSCHHHHHHHHTTCT
T ss_pred hCcc-ccc-ccccccCHHHHHHHHHhccccchhhHHHHHhhcCCCEEEEEeCCCCccCHHHHHHHHHhcC
Confidence 0000 000 00000 00001111111 1223578899999999999999999999999998774
|
| >3e4d_A Esterase D; S-formylglutathione hydrolase, hydrolase fold family, catalytic triad, kinetics, proposed reaction mechanism; HET: MSE; 2.01A {Agrobacterium tumefaciens} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-16 Score=163.44 Aligned_cols=198 Identities=11% Similarity=-0.002 Sum_probs=126.0
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH---HHHHHHHCCcEEEEEcCCCCCCCCc---------
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGE--------- 637 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~Gy~V~~~d~rGs~G~G~--------- 637 (789)
...|..+...++.|+++. .+++|+||++||+++. ...|.. ....+.+.||.|+++|+||.+....
T Consensus 23 ~~~g~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~--~~~~~~~~~~~~~~~~~g~~vv~~d~~g~G~s~~~~~~~~~~g 99 (278)
T 3e4d_A 23 ETLKSEMTFAVYVPPKAI-HEPCPVVWYLSGLTCT--HANVMEKGEYRRMASELGLVVVCPDTSPRGNDVPDELTNWQMG 99 (278)
T ss_dssp TTTTEEEEEEEEECGGGG-TSCEEEEEEECCTTCC--SHHHHHHSCCHHHHHHHTCEEEECCSSCCSTTSCCCTTCTTSB
T ss_pred cccCCcceEEEEcCCCCC-CCCCCEEEEEcCCCCC--ccchhhcccHHHHHhhCCeEEEecCCcccCccccccccccccc
Confidence 446788999999998543 6789999999998764 334444 3345667799999999987332111
Q ss_pred ---hhhccCCC-C-CCcccHH-HHH-HHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh
Q 003886 638 ---EALQSLPG-K-VGSQDVN-DVL-TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (789)
Q Consensus 638 ---~~~~~~~~-~-~~~~~~~-D~~-~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~ 710 (789)
.+...... . ....... .+. ++++++.+...+|+++++|+|||+||++++.++.++|++|+++|+.+|+.++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~~~~~~~~~ 179 (278)
T 3e4d_A 100 KGAGFYLDATEEPWSEHYQMYSYVTEELPALIGQHFRADMSRQSIFGHSMGGHGAMTIALKNPERFKSCSAFAPIVAPSS 179 (278)
T ss_dssp TTBCTTSBCCSTTTTTTCBHHHHHHTHHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCTTTCSCEEEESCCSCGGG
T ss_pred CCccccccCCcCcccchhhHHHHHHHHHHHHHHhhcCCCcCCeEEEEEChHHHHHHHHHHhCCcccceEEEeCCcccccC
Confidence 00000000 0 0111222 222 366666666457789999999999999999999999999999999999887543
Q ss_pred hhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCC--CCCEEEEEeCCCCCCChHH-HHHHHHHCCC
Q 003886 711 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV--KTPTIFLLGAQDLRVPVSN-GLQVIYHIPF 787 (789)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i--~~P~Lii~G~~D~~vp~~~-~~~l~~~l~~ 787 (789)
... ....+...++. . ...+...+|...+.++ .+|+||+||++|..||.+. +.+++++|++
T Consensus 180 ~~~----~~~~~~~~~~~---------~----~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~~l~~ 242 (278)
T 3e4d_A 180 ADW----SEPALEKYLGA---------D----RAAWRRYDACSLVEDGARFPEFLIDQGKADSFLEKGLRPWLFEEAIKG 242 (278)
T ss_dssp CTT----THHHHHHHHCS---------C----GGGGGGGCHHHHHHTTCCCSEEEEEEETTCTTHHHHTCTHHHHHHHTT
T ss_pred Ccc----chhhHHHhcCC---------c----HHHHHhcChhhHhhcCCCCCcEEEEecCCCcccccchhHHHHHHHHHH
Confidence 210 00001111111 0 1122334444444433 4699999999999998532 6777777764
|
| >1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold, hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus familiaris} SCOP: c.69.1.6 PDB: 1hlg_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=8.7e-16 Score=166.27 Aligned_cols=134 Identities=16% Similarity=0.203 Sum_probs=95.4
Q ss_pred eeecCCCeeEEEEEEecCCCC--CCCCCcEEEEEcCCCCCCCchhhH------HHHHHHHHCCcEEEEEcCCCCCCCCch
Q 003886 567 NLTKGAQKPFEAIFVSSSHKK--DCSCDPLIVVLHGGPHSVSLSSYS------KSLAFLSSVGYSLLIVNYRGSLGFGEE 638 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~--~~~~~P~vv~~HGg~~~~~~~~~~------~~~~~la~~Gy~V~~~d~rGs~G~G~~ 638 (789)
.+...||..+.++.+.|.... +.++.|+||++||.+++. ..|. .....|+++||.|+++|+|| +|.+
T Consensus 31 ~~~~~dG~~l~~~~~~~~~~~~~~~~~~~~vvl~HG~~~~~--~~~~~~~~~~~~a~~l~~~G~~vi~~D~~G---~G~S 105 (377)
T 1k8q_A 31 EVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASA--TNWISNLPNNSLAFILADAGYDVWLGNSRG---NTWA 105 (377)
T ss_dssp EEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCCG--GGGSSSCTTTCHHHHHHHTTCEEEECCCTT---STTS
T ss_pred EeEcCCCCEEEEEEecCCCCCccccCCCCeEEEECCCCCch--hhhhcCCCcccHHHHHHHCCCCEEEecCCC---CCCC
Confidence 445678999998888764211 113679999999977653 3333 23448999999999999998 4443
Q ss_pred hhcc----CCC---CCCccc-HH-HHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCC---ceeEEEEeCCcc
Q 003886 639 ALQS----LPG---KVGSQD-VN-DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLC 706 (789)
Q Consensus 639 ~~~~----~~~---~~~~~~-~~-D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~---~~~a~v~~~pv~ 706 (789)
.... ... .+...+ .+ |+.+++++++++ .+.++++|+|||+||.+++.++.++|+ +++++|+.+|..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~~i~~~~~~--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~v~~lvl~~~~~ 183 (377)
T 1k8q_A 106 RRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKK--TGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALAPVA 183 (377)
T ss_dssp CEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHH--HCCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEEEEEESCCS
T ss_pred CCCCCCCCCcccccCccHHHHHhhhHHHHHHHHHHh--cCcCceEEEEechhhHHHHHHHhcCchhhhhhhEEEEeCCch
Confidence 3210 000 111112 34 777889988776 356789999999999999999999998 899999999875
Q ss_pred c
Q 003886 707 N 707 (789)
Q Consensus 707 ~ 707 (789)
.
T Consensus 184 ~ 184 (377)
T 1k8q_A 184 T 184 (377)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=9.7e-16 Score=164.90 Aligned_cols=125 Identities=18% Similarity=0.214 Sum_probs=98.7
Q ss_pred CeeEEEEEEecCCCC--------------CCCCCcEEEEEcCCCCCCCch---hhHHHHHHHH-HCCcEEEEEcCCCCCC
Q 003886 573 QKPFEAIFVSSSHKK--------------DCSCDPLIVVLHGGPHSVSLS---SYSKSLAFLS-SVGYSLLIVNYRGSLG 634 (789)
Q Consensus 573 g~~l~~~~~~P~~~~--------------~~~~~P~vv~~HGg~~~~~~~---~~~~~~~~la-~~Gy~V~~~d~rGs~G 634 (789)
+..+.+.++.|++.. ..++.|+||++|||++..... .|......|+ ++||.|+++||||+++
T Consensus 80 ~~~l~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~p~vv~~HGgg~~~g~~~~~~~~~~~~~la~~~g~~vv~~d~rg~~~ 159 (351)
T 2zsh_A 80 RINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPE 159 (351)
T ss_dssp TTTEEEEEEEECCTTCSSCCCTTSTTCCCCSSSCEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTSEEEEECCCCTTT
T ss_pred CCCeEEEEEecCCccccccccccccccccCCCCceEEEEECCCcCcCCCCcchhHHHHHHHHHHHcCCEEEEecCCCCCC
Confidence 344777788887542 246789999999987643222 3666778888 7899999999999554
Q ss_pred CCchhhccCCCCCCcccHHHHHHHHHHHHHcC----CCCCc-cEEEEEcCccHHHHHHHHHhCCC---ceeEEEEeCCcc
Q 003886 635 FGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG----LANPS-KVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNPLC 706 (789)
Q Consensus 635 ~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~----~~d~~-rv~l~G~S~GG~~a~~~~~~~p~---~~~a~v~~~pv~ 706 (789)
+. ....++|+.++++++.++. .+|.+ ||+|+|||+||++++.++.++++ +++++|+.+|+.
T Consensus 160 ~~-----------~~~~~~D~~~~~~~l~~~~~~~~~~d~~~~i~l~G~S~GG~la~~~a~~~~~~~~~v~~~vl~~p~~ 228 (351)
T 2zsh_A 160 NP-----------YPCAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGIDVLGNILLNPMF 228 (351)
T ss_dssp SC-----------TTHHHHHHHHHHHHHHTCGGGCCTTTSSCEEEEEEETHHHHHHHHHHHHHHTTTCCCCEEEEESCCC
T ss_pred CC-----------CchhHHHHHHHHHHHHhCchhhcCCCCCCcEEEEEeCcCHHHHHHHHHHhhccCCCeeEEEEECCcc
Confidence 21 1234789999999999864 47889 99999999999999999998888 899999999987
Q ss_pred ch
Q 003886 707 NL 708 (789)
Q Consensus 707 ~~ 708 (789)
+.
T Consensus 229 ~~ 230 (351)
T 2zsh_A 229 GG 230 (351)
T ss_dssp CC
T ss_pred CC
Confidence 53
|
| >1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A, alpha/beta hydrolase family; 1.85A {Bacillus subtilis} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-16 Score=170.44 Aligned_cols=133 Identities=19% Similarity=0.137 Sum_probs=101.4
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-Cch--hhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLS--SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 643 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~-~~~--~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~ 643 (789)
.+...+|..+.+.++.|.+ ..++.|+||++|||+... ... .|......|+++||.|+++||||.+|+...
T Consensus 86 ~~~~~~g~~l~~~v~~p~~--~~~~~p~vv~iHGgg~~~g~~~~~~~~~~~~~la~~g~~vv~~d~r~~gg~~~~----- 158 (361)
T 1jkm_A 86 TILGVDGNEITLHVFRPAG--VEGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWTAEGH----- 158 (361)
T ss_dssp EEECTTSCEEEEEEEEETT--CCSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEETTEE-----
T ss_pred eeecCCCCeEEEEEEeCCC--CCCCCeEEEEEcCCccccCCCcccchhHHHHHHHhCCCEEEEEecCCCCCCCCC-----
Confidence 4455677789999999974 223789999999987332 233 566677889889999999999996544211
Q ss_pred CCCCCcccHHHHHHHHHHHHHcC-CCCCccEEEEEcCccHHHHHHHHHh-----CCCceeEEEEeCCccch
Q 003886 644 PGKVGSQDVNDVLTAIDHVIDMG-LANPSKVTVVGGSHGGFLTTHLIGQ-----APDKFVAAAARNPLCNL 708 (789)
Q Consensus 644 ~~~~~~~~~~D~~~~i~~l~~~~-~~d~~rv~l~G~S~GG~~a~~~~~~-----~p~~~~a~v~~~pv~~~ 708 (789)
..+...+.|+.++++|+.++. ..+.++|+|+|||+||++++.++.. +|++++++|+.+|+.+.
T Consensus 159 --~~~~~~~~D~~~~~~~v~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~p~~i~~~il~~~~~~~ 227 (361)
T 1jkm_A 159 --HPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISG 227 (361)
T ss_dssp --CCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCCC
T ss_pred --CCCCccHHHHHHHHHHHHhhHHhcCCCeEEEEEECHHHHHHHHHHHHHHhcCCCcCcceEEEECCcccc
Confidence 123345789999999998762 1123399999999999999999988 78899999999998875
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5e-14 Score=150.80 Aligned_cols=281 Identities=5% Similarity=-0.016 Sum_probs=171.0
Q ss_pred ecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003886 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 180 (789)
Q Consensus 102 ~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (789)
...||||+++.+...... . ......++.++.. .++.. .+... .....++|||||+++++....+ ..
T Consensus 46 ~~~s~dg~~l~~~~~~~~-~-~~~~~~v~~~d~~--~~~~~~~~~~~------~~~~~~~~s~dg~~l~v~~~~~---~~ 112 (353)
T 3vgz_A 46 MAYSQQENALWLATSQSR-K-LDKGGVVYRLDPV--TLEVTQAIHND------LKPFGATINNTTQTLWFGNTVN---SA 112 (353)
T ss_dssp EEEETTTTEEEEEECCCT-T-TEESEEEEEECTT--TCCEEEEEEES------SCCCSEEEETTTTEEEEEETTT---TE
T ss_pred eEECCCCCEEEEEcCCCc-C-CCCCccEEEEcCC--CCeEEEEEecC------CCcceEEECCCCCEEEEEecCC---CE
Confidence 345799998855432211 0 1124577887652 22322 22221 2356789999999987765533 25
Q ss_pred EEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCccee
Q 003886 181 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (789)
Q Consensus 181 ~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (789)
++.++ .+++..+.+.................++.|||||++|++....
T Consensus 113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~------------------------------- 161 (353)
T 3vgz_A 113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG------------------------------- 161 (353)
T ss_dssp EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES-------------------------------
T ss_pred EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC-------------------------------
Confidence 66666 5666656555432110000000012568999999987765422
Q ss_pred eCCcccccCCccCceEEEEEccCCceEeccCCC-CCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceE
Q 003886 260 EEDWGETYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (789)
Q Consensus 260 ~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~-~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~ 338 (789)
....|+++|+.+++.... .+ .......++|+|||+. |++.. ....|+
T Consensus 162 -----------~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~s~dg~~----l~~~~---------------~~~~i~ 209 (353)
T 3vgz_A 162 -----------KESVIWVVDGGNIKLKTA--IQNTGKMSTGLALDSEGKR----LYTTN---------------ADGELI 209 (353)
T ss_dssp -----------SSCEEEEEETTTTEEEEE--ECCCCTTCCCCEEETTTTE----EEEEC---------------TTSEEE
T ss_pred -----------CCceEEEEcCCCCceEEE--ecCCCCccceEEECCCCCE----EEEEc---------------CCCeEE
Confidence 135799999999887655 23 2334678899999997 66654 123688
Q ss_pred EEecccccchhhhhhhhcCCCCCCCee-ecCC----CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 339 AVRVSLYKSEASELELKESSSEDLPVV-NLTE----SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~-~Lt~----~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
++|+ .+++.. .+.. ........+|+|||++|+..... ...|+++|..+
T Consensus 210 ~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------~~~v~~~d~~~ 262 (353)
T 3vgz_A 210 TIDT-----------------ADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK----------AAEVLVVDTRN 262 (353)
T ss_dssp EEET-----------------TTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS----------SSEEEEEETTT
T ss_pred EEEC-----------------CCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC----------CCEEEEEECCC
Confidence 8997 444433 3322 12234457999999988665532 24699999877
Q ss_pred CCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeE
Q 003886 414 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWS 493 (789)
Q Consensus 414 ~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~ 493 (789)
++... ... .. ....+.|+|||+++|++...+ ..|+.+|+.+++..............
T Consensus 263 ~~~~~-------~~~---~~-----------~~~~~~~s~dg~~l~v~~~~~--~~v~~~d~~~~~~~~~~~~~~~~~~~ 319 (353)
T 3vgz_A 263 GNILA-------KVA---AP-----------ESLAVLFNPARNEAYVTHRQA--GKVSVIDAKSYKVVKTFDTPTHPNSL 319 (353)
T ss_dssp CCEEE-------EEE---CS-----------SCCCEEEETTTTEEEEEETTT--TEEEEEETTTTEEEEEEECCSEEEEE
T ss_pred CcEEE-------EEE---cC-----------CCceEEECCCCCEEEEEECCC--CeEEEEECCCCeEEEEEecCCCCCeE
Confidence 54321 111 00 123578999999887765333 36778899888877655544444556
Q ss_pred EeeecCCEEEEEEeC
Q 003886 494 LLTLDGDNIIAVSSS 508 (789)
Q Consensus 494 ~~s~dg~~l~~~~ss 508 (789)
.+++||+.++++..+
T Consensus 320 ~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 320 ALSADGKTLYVSVKQ 334 (353)
T ss_dssp EECTTSCEEEEEEEC
T ss_pred EEcCCCCEEEEEEcc
Confidence 889999988877766
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-14 Score=156.27 Aligned_cols=243 Identities=14% Similarity=0.106 Sum_probs=163.2
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
.+..++|||||++|++....+ ..+...+ ..++..+.+.....+ ..+.|||||++|++....
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d---~~i~v~d~~~~~~~~~~~~~~~v----------~~~~~spdg~~l~~~~~~----- 94 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHS---NDVSIIDTATNNVIATVPAGSSP----------QGVAVSPDGKQVYVTNMA----- 94 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGG---TEEEEEETTTTEEEEEEECSSSE----------EEEEECTTSSEEEEEETT-----
T ss_pred CcceEEECCCCCEEEEECCCC---CeEEEEECCCCeEEEEEECCCCc----------cceEECCCCCEEEEEECC-----
Confidence 467899999999997765332 1344333 456665555543333 789999999999876432
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (789)
...|++||+.+++.... ......+..++|+|||+. |
T Consensus 95 --------------------------------------~~~v~v~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l 130 (391)
T 1l0q_A 95 --------------------------------------SSTLSVIDTTSNTVAGT--VKTGKSPLGLALSPDGKK----L 130 (391)
T ss_dssp --------------------------------------TTEEEEEETTTTEEEEE--EECSSSEEEEEECTTSSE----E
T ss_pred --------------------------------------CCEEEEEECCCCeEEEE--EeCCCCcceEEECCCCCE----E
Confidence 25799999999987665 344456788999999998 7
Q ss_pred EEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 314 ~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
++++. ....|+++|+ .+++...............|+|||++|+.....+
T Consensus 131 ~~~~~--------------~~~~v~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~ 179 (391)
T 1l0q_A 131 YVTNN--------------GDKTVSVINT-----------------VTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDS 179 (391)
T ss_dssp EEEET--------------TTTEEEEEET-----------------TTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT
T ss_pred EEEeC--------------CCCEEEEEEC-----------------CCCcEEEEEecCCCcceEEECCCCCEEEEEeCCC
Confidence 66652 2337999998 4554443333334457889999999886665432
Q ss_pred CCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 394 ~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
..|++||+.++..... .. .. ..+..+.|+|||+.|++.........|+.+
T Consensus 180 ----------~~v~~~d~~~~~~~~~-------~~---~~----------~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~ 229 (391)
T 1l0q_A 180 ----------MSISVIDTVTNSVIDT-------VK---VE----------AAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (391)
T ss_dssp ----------TEEEEEETTTTEEEEE-------EE---CS----------SEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred ----------CEEEEEECCCCeEEEE-------Ee---cC----------CCccceEECCCCCEEEEEecCcCCCcEEEE
Confidence 3699999877543211 10 00 012356799999988877654355678888
Q ss_pred ECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 474 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 474 dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
|+.+++.......+.......++++|+.++++.+.. ..+.+.++.++
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d---~~v~v~d~~~~ 276 (391)
T 1l0q_A 230 DTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFX---NTVSVIDTATN 276 (391)
T ss_dssp ETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT---TEEEEEETTTT
T ss_pred ECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCC---CEEEEEECCCC
Confidence 998888766555444444567899999887776544 34777776543
|
| >3og9_A Protein YAHD A copper inducible hydrolase; alpha/beta hydrolase, copper homeostasis, malic acid; 1.88A {Lactococcus lactis subsp} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.5e-16 Score=154.87 Aligned_cols=155 Identities=10% Similarity=0.045 Sum_probs=109.6
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhcc-----C-CCCC----CcccHHHHHH
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQS-----L-PGKV----GSQDVNDVLT 657 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~-----~-~~~~----~~~~~~D~~~ 657 (789)
...+.| ||++||.+.+ ...|......|+ .||.|+++|.++..+.+..+... . .+.. .....+++.+
T Consensus 13 ~~~~~p-vv~lHG~g~~--~~~~~~~~~~l~-~~~~v~~~~~~~~~~g~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~ 88 (209)
T 3og9_A 13 RKDLAP-LLLLHSTGGD--EHQLVEIAEMIA-PSHPILSIRGRINEQGVNRYFKLRGLGGFTKENFDLESLDEETDWLTD 88 (209)
T ss_dssp CTTSCC-EEEECCTTCC--TTTTHHHHHHHS-TTCCEEEECCSBCGGGCCBSSCBCSCTTCSGGGBCHHHHHHHHHHHHH
T ss_pred CCCCCC-EEEEeCCCCC--HHHHHHHHHhcC-CCceEEEecCCcCCCCcccceecccccccccCCCCHHHHHHHHHHHHH
Confidence 345778 9999997654 456666777776 78999999965322112222110 0 0001 0112455666
Q ss_pred HHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCC
Q 003886 658 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTES 737 (789)
Q Consensus 658 ~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (789)
.++.+.++..+|.++++|+|||+||++++.++.++|++++++|+.+|......
T Consensus 89 ~~~~~~~~~~~d~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~--------------------------- 141 (209)
T 3og9_A 89 EVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKINFDKIIAFHGMQLEDF--------------------------- 141 (209)
T ss_dssp HHHHHHHHHTCCGGGCEEEEETHHHHHHHHHHHTTSCCCSEEEEESCCCCCCC---------------------------
T ss_pred HHHHHHHhcCCCcceEEEEEECHHHHHHHHHHHhCCcccceEEEECCCCCCcc---------------------------
Confidence 66666666557889999999999999999999999999999999988643100
Q ss_pred CChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 738 PSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 738 ~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.......++|+|++||++|.+||++++.++++.|++
T Consensus 142 --------------~~~~~~~~~p~li~~G~~D~~v~~~~~~~~~~~l~~ 177 (209)
T 3og9_A 142 --------------EQTVQLDDKHVFLSYAPNDMIVPQKNFGDLKGDLED 177 (209)
T ss_dssp --------------CCCCCCTTCEEEEEECTTCSSSCHHHHHHHHHHHHH
T ss_pred --------------cccccccCCCEEEEcCCCCCccCHHHHHHHHHHHHH
Confidence 011235678999999999999999999999988764
|
| >2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A {Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A 1qz3_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-16 Score=166.30 Aligned_cols=129 Identities=18% Similarity=0.211 Sum_probs=101.7
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CchhhHHHHHHHHHC-CcEEEEEcCCCCCCCCchhhccCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLP 644 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~-~~~~~~~~~~~la~~-Gy~V~~~d~rGs~G~G~~~~~~~~ 644 (789)
.+...+| .+.++++.|.+. .++.|+||++|||++.. ....|......|+++ ||.|+++||||.+++..
T Consensus 52 ~i~~~~g-~l~~~~~~P~~~--~~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~~~~~~------- 121 (310)
T 2hm7_A 52 DMDLPGR-TLKVRMYRPEGV--EPPYPALVYYHGGSWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEHKF------- 121 (310)
T ss_dssp EEEETTE-EEEEEEEECTTC--CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSCT-------
T ss_pred EeccCCC-eEEEEEEecCCC--CCCCCEEEEECCCccccCChhHhHHHHHHHHHhcCCEEEEeCCCCCCCCCC-------
Confidence 3445556 899999999742 46789999999977432 344677778888875 99999999998654321
Q ss_pred CCCCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhCCC----ceeEEEEeCCccchh
Q 003886 645 GKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLA 709 (789)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~p~----~~~a~v~~~pv~~~~ 709 (789)
....+|+.++++++.++. .+|.++|+|+|||+||++++.++.++|+ +++++|+.+|..+..
T Consensus 122 ----~~~~~d~~~~~~~l~~~~~~~~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~v~~~vl~~p~~~~~ 189 (310)
T 2hm7_A 122 ----PAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTGYD 189 (310)
T ss_dssp ----THHHHHHHHHHHHHHHTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCCCEEEESCCCCCC
T ss_pred ----CccHHHHHHHHHHHHhhHHHhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCceEEEEEcCCcCCC
Confidence 234789999999998864 3678999999999999999999987765 699999999987653
|
| >3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.7e-16 Score=159.42 Aligned_cols=181 Identities=19% Similarity=0.176 Sum_probs=119.1
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC-CCcccHHHHHHHHHHHHHcCCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK-VGSQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~-~~~~~~~D~~~~i~~l~~~~~~ 668 (789)
++.|+||++||.+.+ ...|......|+++||.|+++|+||. |.+........ ......+|+.++++++..+
T Consensus 20 ~~~~~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g~---g~s~~~~~~~~~~~~~~~~d~~~~i~~l~~~--- 91 (251)
T 3dkr_A 20 GTDTGVVLLHAYTGS--PNDMNFMARALQRSGYGVYVPLFSGH---GTVEPLDILTKGNPDIWWAESSAAVAHMTAK--- 91 (251)
T ss_dssp CSSEEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEECCCTTC---SSSCTHHHHHHCCHHHHHHHHHHHHHHHHTT---
T ss_pred CCCceEEEeCCCCCC--HHHHHHHHHHHHHCCCEEEecCCCCC---CCCChhhhcCcccHHHHHHHHHHHHHHHHHh---
Confidence 356889999997664 55777888899999999999999984 43311100000 1111257788888888765
Q ss_pred CCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcc-hhhhhccCccccccCCCCCh-------
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDW-CYVESYGSKGKDSFTESPSV------- 740 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------- 740 (789)
.++++|+|||+||++++.++.++|++++++++.+|......... +.+ .+...+. ......+..
T Consensus 92 -~~~~~l~G~S~Gg~~a~~~a~~~p~~~~~~i~~~p~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 162 (251)
T 3dkr_A 92 -YAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPILPGKHHLV----PGFLKYAEYMN----RLAGKSDESTQILAYL 162 (251)
T ss_dssp -CSEEEEEESHHHHHHHHHHHHHCSSCCEEEESSCCCCTTCBCHH----HHHHHHHHHHH----HHHTCCCCHHHHHHHH
T ss_pred -cCCeEEEEechHHHHHHHHHHhCccceeeEEEecchhhccchhh----HHHHHHHHHHH----hhcccCcchhhHHhhh
Confidence 57999999999999999999999999999999998865311000 000 0000000 000000000
Q ss_pred -hhHHHHHh--cCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 741 -EDLTRFHS--KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 741 -~~~~~~~~--~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.....+.. ......+.++++|+|+++|++|..+|++.+.++++.+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~ 212 (251)
T 3dkr_A 163 PGQLAAIDQFATTVAADLNLVKQPTFIGQAGQDELVDGRLAYQLRDALIN 212 (251)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSBCTTHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhccccccCCCEEEEecCCCcccChHHHHHHHHHhcC
Confidence 00111111 112345778899999999999999999999999999876
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.4e-15 Score=175.56 Aligned_cols=266 Identities=9% Similarity=0.107 Sum_probs=166.1
Q ss_pred CCCCCeEEEEecCCCC-CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCC
Q 003886 162 SPSGSKLLVVRNPENE-SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 239 (789)
Q Consensus 162 SPdG~~la~~~~~~~~-~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 239 (789)
+|||++++|+++.++. ...+|.+. .+++.+.+++...-..+. ...+..++|||||++|||......
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~---~~~~~~~~~SPDg~~la~~~~~~G--------- 147 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDG---TVALRGYAFSEDGEYFAYGLSASG--------- 147 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTS---CEEEEEEEECTTSSEEEEEEEETT---------
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCC---CEEEEEEEECCCCCEEEEEEcCCC---------
Confidence 4999999999876532 33677777 456666666542211110 012368999999999999876531
Q ss_pred CCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeec
Q 003886 240 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (789)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~ 319 (789)
.....|+++|+++|+...+ +.....+..++|||||+. |+|++..
T Consensus 148 ------------------------------~~~~~i~v~d~~tg~~~~~--~~~~~~~~~~~wspDg~~----l~~~~~~ 191 (710)
T 2xdw_A 148 ------------------------------SDWVTIKFMKVDGAKELPD--VLERVKFSCMAWTHDGKG----MFYNAYP 191 (710)
T ss_dssp ------------------------------CSCEEEEEEETTTTEEEEE--EEEEECSCCEEECTTSSE----EEEEECC
T ss_pred ------------------------------CceEEEEEEECCCCCCCcc--cccCcccceEEEEeCCCE----EEEEEEC
Confidence 1235899999999988765 222333678999999999 9998854
Q ss_pred CCce-eeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe--eec-CC--CCCccCcceecCCCCEEEEEecCC
Q 003886 320 SETR-KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNL-TE--SISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 320 ~~~~-~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~L-t~--~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
.... ..+.....++...||++++ .++.. +.+ +. +......+.|||||++|++.+.+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~l-----------------~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~ 254 (710)
T 2xdw_A 192 QQDGKSDGTETSTNLHQKLYYHVL-----------------GTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREG 254 (710)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEET-----------------TSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECS
T ss_pred CccccccccccccCCCCEEEEEEC-----------------CCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEcc
Confidence 3310 0011111234567999998 44432 222 22 123356899999999999998654
Q ss_pred CCCCCCccccceeEEeecCC------CC--CCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeC
Q 003886 394 SVDSGAHSATDSLHRIDWPT------NG--NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 465 (789)
Q Consensus 394 ~~~~g~~~~~~~L~~~d~~~------~~--~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~ 465 (789)
. ....+||++|+.+ +. .+.++... . .....|++||+.|+|.+..+
T Consensus 255 ~------~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~---------------~------~~~~~~s~dg~~l~~~s~~~ 307 (710)
T 2xdw_A 255 C------DPVNRLWYCDLQQESNGITGILKWVKLIDNF---------------E------GEYDYVTNEGTVFTFKTNRH 307 (710)
T ss_dssp S------SSCCEEEEEEGGGSSSSSCSSCCCEEEECSS---------------S------SCEEEEEEETTEEEEEECTT
T ss_pred C------CCccEEEEEECcccccccCCccceEEeeCCC---------------C------cEEEEEeccCCEEEEEECCC
Confidence 1 1146899999876 32 11111100 0 01225899999999998755
Q ss_pred C-eEEEEEEECCCCc---EEEecCCCC--CceeEEeeecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 466 S-SQVIISVNVSSGE---LLRITPAES--NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 466 ~-~~~l~~~dl~tg~---~~~lt~~~~--~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
+ ...|+.+|+++++ .+.++.... ......++ +++.++++..... -..|+++++.
T Consensus 308 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~lv~~~~~~g-~~~l~~~~~~ 367 (710)
T 2xdw_A 308 SPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHDV-KNTLQLHDLA 367 (710)
T ss_dssp CTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE-TTTEEEEEEEETT-EEEEEEEETT
T ss_pred CCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE-cCCEEEEEEEECC-EEEEEEEECC
Confidence 3 6789999998875 466665543 22223444 4677777765543 3457777763
|
| >3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading enzyme, RICE, virulence, innate immune responses, pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A 3h2k_A* 3h2h_A 3h2i_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5e-16 Score=170.12 Aligned_cols=137 Identities=17% Similarity=0.104 Sum_probs=92.4
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc---------hhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCC
Q 003886 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL---------SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 644 (789)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~---------~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~ 644 (789)
..+.|+++.|.+..+.+++|+||++||+++.... ..|......|+++||.|+++|+||.++.+........
T Consensus 61 ~~~~g~l~~P~~~~~~~~~P~vv~~HG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~V~~~D~~G~G~s~~~~~~~~~ 140 (397)
T 3h2g_A 61 ATASGVLLIPGGERCSGPYPLLGWGHPTEALRAQEQAKEIRDAKGDDPLVTRLASQGYVVVGSDYLGLGKSNYAYHPYLH 140 (397)
T ss_dssp EEEEEEEEEEECTTCCSCEEEEEEECCCCCBTTCCHHHHHHHTTTCSHHHHTTGGGTCEEEEECCTTSTTCCCSSCCTTC
T ss_pred EEEEEEEEeCCCCCCCCCCcEEEEeCCCcCCCCcccccccccccchHHHHHHHHHCCCEEEEecCCCCCCCCCCccchhh
Confidence 5799999999865556789999999998775322 1144567788999999999999995433211100000
Q ss_pred CCCCcccHHHHHHHHHHHHHc-CCCCCccEEEEEcCccHHHHHHHHHh-CC-----CceeEEEEeCCccchhh
Q 003886 645 GKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQ-AP-----DKFVAAAARNPLCNLAL 710 (789)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~~~~-~p-----~~~~a~v~~~pv~~~~~ 710 (789)
......++.|..+++..+.++ +..|.++|+|+|||+||+++++++.. .+ ..+.+++..++..++..
T Consensus 141 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~ 213 (397)
T 3h2g_A 141 SASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEFHLVASAPISGPYALEQ 213 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTTSEEEEEEEESCCSSHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEECHHHHHHHHHHHHhhhhcCcCcceEEEecccccccHHH
Confidence 000012355566666666554 44457899999999999999888632 22 26888888888887753
|
| >2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the alpha/beta superfamily, structural genomics; HET: MSE TLA P6G; 1.35A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.4e-16 Score=147.31 Aligned_cols=144 Identities=10% Similarity=0.110 Sum_probs=108.0
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (789)
++.|+||++||.+.+.....+......|+++||.|+++|+|| +|.+.... ......+++.++++++.+.. +
T Consensus 2 ~~~~~vv~~HG~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~g---~g~s~~~~----~~~~~~~~~~~~~~~~~~~~--~ 72 (176)
T 2qjw_A 2 MSRGHCILAHGFESGPDALKVTALAEVAERLGWTHERPDFTD---LDARRDLG----QLGDVRGRLQRLLEIARAAT--E 72 (176)
T ss_dssp CSSCEEEEECCTTCCTTSHHHHHHHHHHHHTTCEEECCCCHH---HHTCGGGC----TTCCHHHHHHHHHHHHHHHH--T
T ss_pred CCCcEEEEEeCCCCCccHHHHHHHHHHHHHCCCEEEEeCCCC---CCCCCCCC----CCCCHHHHHHHHHHHHHhcC--C
Confidence 467999999998765433344467788999999999999997 33332111 11112345555677776653 4
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhc
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK 749 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (789)
.++++++|||+||.+++.++.++| ++++|+.+|..+...+ +
T Consensus 73 ~~~~~l~G~S~Gg~~a~~~a~~~~--~~~~v~~~~~~~~~~~--------------------------~----------- 113 (176)
T 2qjw_A 73 KGPVVLAGSSLGSYIAAQVSLQVP--TRALFLMVPPTKMGPL--------------------------P----------- 113 (176)
T ss_dssp TSCEEEEEETHHHHHHHHHHTTSC--CSEEEEESCCSCBTTB--------------------------C-----------
T ss_pred CCCEEEEEECHHHHHHHHHHHhcC--hhheEEECCcCCcccc--------------------------C-----------
Confidence 589999999999999999999887 9999999987643110 0
Q ss_pred CccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHC
Q 003886 750 SPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHI 785 (789)
Q Consensus 750 sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l 785 (789)
.+.++++|+|++||++|..+|++++.++++.+
T Consensus 114 ----~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~ 145 (176)
T 2qjw_A 114 ----ALDAAAVPISIVHAWHDELIPAADVIAWAQAR 145 (176)
T ss_dssp ----CCCCCSSCEEEEEETTCSSSCHHHHHHHHHHH
T ss_pred ----cccccCCCEEEEEcCCCCccCHHHHHHHHHhC
Confidence 05678899999999999999999999998876
|
| >3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL; 1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A* 3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A 1l7q_A 1l7r_A | Back alignment and structure |
|---|
Probab=99.65 E-value=8.9e-16 Score=175.67 Aligned_cols=207 Identities=14% Similarity=0.099 Sum_probs=143.3
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch-hhHHHH-HHHHHCCcEEEEEcCCCCCCCCchhhccCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLP 644 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~~~~~-~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~ 644 (789)
.++..||..|.+.++.|. ..+++|+||+.||.+...... .|.... +.|+++||+|+.+|+||+++.+..+..
T Consensus 13 ~i~~~DG~~L~~~~~~P~---~~~~~P~vv~~~~~g~~~~~~~~y~~~~~~~la~~Gy~vv~~D~RG~G~S~g~~~~--- 86 (587)
T 3i2k_A 13 MVPMRDGVRLAVDLYRPD---ADGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEGEFVP--- 86 (587)
T ss_dssp EEECTTSCEEEEEEEEEC---CSSCEEEEEEEESSCTTCHHHHHTTTCCTHHHHHTTCEEEEEECTTSTTCCSCCCT---
T ss_pred EEECCCCCEEEEEEEECC---CCCCeeEEEEECCcCCCccccccchhhHHHHHHHCCCEEEEEcCCCCCCCCCcccc---
Confidence 456678999999999997 346889999999854431111 122123 789999999999999997766544321
Q ss_pred CCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc-cchhhhh-cCCCCC----
Q 003886 645 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL-CNLALMV-GTTDIP---- 718 (789)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv-~~~~~~~-~~~~~~---- 718 (789)
...+.+|+.++++|+.++++.+ .+|+++|+||||++++.++.++|+.++|+|+.++. .++..-. ......
T Consensus 87 ---~~~~~~D~~~~i~~l~~~~~~~-~~v~l~G~S~GG~~a~~~a~~~~~~l~a~v~~~~~~~d~~~~~~~~gG~~~~~~ 162 (587)
T 3i2k_A 87 ---HVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGGALSVEA 162 (587)
T ss_dssp ---TTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCTTCCCCHHH
T ss_pred ---ccchhHHHHHHHHHHHhCCCCC-CeEEEEeeCHHHHHHHHHHhhCCCccEEEEEeCCcccccccceeecCCccccch
Confidence 2357899999999999887665 89999999999999999999989999999999998 7653211 111111
Q ss_pred --cchhhhhc-------------------------------cCccc-------------ccc-CCCCChhhHHHHHhcCc
Q 003886 719 --DWCYVESY-------------------------------GSKGK-------------DSF-TESPSVEDLTRFHSKSP 751 (789)
Q Consensus 719 --~~~~~~~~-------------------------------~~~~~-------------~~~-~~~~~~~~~~~~~~~sp 751 (789)
.|...... ....+ ..+ ...+ .....|.+.++
T Consensus 163 ~~~w~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~yw~~~s~ 240 (587)
T 3i2k_A 163 LLGWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHP--DNDESWQSISL 240 (587)
T ss_dssp HHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHTCHHHHHTCSSTTCCHHHHHHCTHHHHTTTTCC--SCCHHHHTTCC
T ss_pred HHHHHHHhhhhcccccccCCccchhhhhhhhhhhhHHHHHHhcCCcccchhccccchhHHhhhhcCC--CCChHHhcCCh
Confidence 12110000 00000 000 1111 11234667777
Q ss_pred cccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 752 ISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 752 ~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
...+++|++|+|+++|..|..+ ..+.++|++|+.
T Consensus 241 ~~~l~~I~vPvL~v~Gw~D~~~--~~~~~~~~~l~~ 274 (587)
T 3i2k_A 241 FERLGGLATPALITAGWYDGFV--GESLRTFVAVKD 274 (587)
T ss_dssp HHHHTTCCCCEEEEEEEECTTH--HHHHHHHHHHTT
T ss_pred hhhhccCCCCEEEEccCCCccc--hHHHHHHHHHhh
Confidence 7889999999999999999864 457888988864
|
| >1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.60A {Thermus thermophilus} SCOP: c.69.1.27 | Back alignment and structure |
|---|
Probab=99.65 E-value=7.5e-16 Score=154.98 Aligned_cols=176 Identities=16% Similarity=0.137 Sum_probs=126.3
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC---------
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK--------- 646 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~--------- 646 (789)
+..+++.|.+ +.|+||++||.+.+ ...|......|+++||.|+++|+|| +|.+........
T Consensus 13 ~~~~~~~~~~-----~~~~vv~~hG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~g---~g~s~~~~~~~~~~~~~~~~~ 82 (238)
T 1ufo_A 13 LSVLARIPEA-----PKALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPR---HGEREGPPPSSKSPRYVEEVY 82 (238)
T ss_dssp EEEEEEEESS-----CCEEEEEECCTTCC--HHHHHHTSTTTGGGTEEEEECCCTT---STTSSCCCCCTTSTTHHHHHH
T ss_pred EEEEEEecCC-----CccEEEEECCCccc--chHHHHHHHHHHhCCCEEEEecCCC---CccCCCCCCcccccchhhhHH
Confidence 4445677752 77999999997653 4566666678888999999999998 343321111000
Q ss_pred -CCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhh
Q 003886 647 -VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (789)
Q Consensus 647 -~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~ 725 (789)
......+|+.++++++.+++. ++++++|||+||.+++.++.++|++++++++.++...... ...
T Consensus 83 ~~~~~~~~d~~~~~~~l~~~~~---~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~~~~~~-------~~~----- 147 (238)
T 1ufo_A 83 RVALGFKEEARRVAEEAERRFG---LPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPMKL-------PQG----- 147 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---CCEEEEEETHHHHHHHHHHHTTCCCSCEEEESCCSSCCCC-------CTT-----
T ss_pred HHHHHHHHHHHHHHHHHHhccC---CcEEEEEEChHHHHHHHHHHhccCcceEEEEecCCccchh-------hhh-----
Confidence 011236788888888887652 7899999999999999999999999999988876532110 000
Q ss_pred ccCccccccCCCCChhhHHHHHhcCccccCCCC-CCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
+...+ +....+...++...+.++ ++|+|++||++|..+|++.+.++++.++
T Consensus 148 --------~~~~~--~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~ 199 (238)
T 1ufo_A 148 --------QVVED--PGVLALYQAPPATRGEAYGGVPLLHLHGSRDHIVPLARMEKTLEALR 199 (238)
T ss_dssp --------CCCCC--HHHHHHHHSCGGGCGGGGTTCCEEEEEETTCTTTTHHHHHHHHHHHG
T ss_pred --------hccCC--cccchhhcCChhhhhhhccCCcEEEEECCCCCccCcHHHHHHHHHHh
Confidence 00111 224555666777778888 8999999999999999999999999886
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-15 Score=160.74 Aligned_cols=248 Identities=11% Similarity=0.053 Sum_probs=155.5
Q ss_pred ccEEEEeCCCCCeEEEEecCCC-----CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeec
Q 003886 155 GASAVVPSPSGSKLLVVRNPEN-----ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~-----~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~ 228 (789)
.+..|++ ||++|||+....+ ...+++.+. .+++.+++ ... ..+.|||||++|||++.+
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~----------~~~~~SpDg~~la~~~~~ 79 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENA----------TMPRISPDGKKIAFMRAN 79 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESC----------EEEEECTTSSEEEEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccC----------CCeEECCCCCEEEEEEec
Confidence 3667888 9999999864321 134566666 45555444 223 689999999999998764
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCC
Q 003886 229 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~ 308 (789)
.. ....+||++|+++|+.+.+. .... +..+.|||||+.
T Consensus 80 ~~---------------------------------------~~~~~l~~~~~~~g~~~~l~--~~~~-~~~~~wspdg~~ 117 (347)
T 2gop_A 80 EE---------------------------------------KKVSEIWVADLETLSSKKIL--EAKN-IRSLEWNEDSRK 117 (347)
T ss_dssp TT---------------------------------------TTEEEEEEEETTTTEEEEEE--EESE-EEEEEECTTSSE
T ss_pred cC---------------------------------------CCcceEEEEECCCCceEEEE--cCCC-ccceeECCCCCE
Confidence 31 02367999999999988883 3333 788999999999
Q ss_pred CccEEEEEeecCCce------------eeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe-eecCCCCCccC
Q 003886 309 LHQYLVFVGWSSETR------------KLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTESISSAF 375 (789)
Q Consensus 309 ~~~~l~f~~~~~~~~------------~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~~~~~~ 375 (789)
|+|.+...... ..|..+.......||++|+ .+++. +.|+. . ...
T Consensus 118 ----l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~-----------------~~~~~~~~l~~-~-~~~ 174 (347)
T 2gop_A 118 ----LLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT-----------------ESEEVIEEFEK-P-RFS 174 (347)
T ss_dssp ----EEEEEECCCC---------CCCC---------CEEEEEEEET-----------------TTTEEEEEEEE-E-TTC
T ss_pred ----EEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC-----------------CCCeEEeeecC-C-Ccc
Confidence 99987531100 0010011112357999998 66776 77776 4 678
Q ss_pred cceecCCCCEEEEEecCCCCCCCCccc-cceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccC
Q 003886 376 FPRFSPDGKFLVFLSAKSSVDSGAHSA-TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 454 (789)
Q Consensus 376 ~p~~SpDG~~la~~s~~~~~~~g~~~~-~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~D 454 (789)
.+.||||| |+|.+...... .... ..+||++| +++.+.++.. . .. ..++||
T Consensus 175 ~~~~spdg--~~~~~~~~~~~--~~~~~~~~l~~~d--~~~~~~l~~~-~--------------------~~--~~~spd 225 (347)
T 2gop_A 175 SGIWHRDK--IVVNVPHREII--PQYFKFWDIYIWE--DGKEEKMFEK-V--------------------SF--YAVDSD 225 (347)
T ss_dssp EEEEETTE--EEEEEECCCSS--CCSSCCEEEEEEE--TTEEEEEEEE-E--------------------SE--EEEEEC
T ss_pred cccCCCCe--EEEEEeccccc--ccccccccEEEeC--CCceEEeccC-c--------------------ce--eeECCC
Confidence 89999999 77776543100 0001 35799998 4433222211 0 01 124899
Q ss_pred CCEEEEEEEeC-----CeEEEEEEECCCCcEEEecCCCC-Ccee-EEeeecCCEEEEEEeCCCCCCeEEEEe
Q 003886 455 GCTMLLSSIWG-----SSQVIISVNVSSGELLRITPAES-NFSW-SLLTLDGDNIIAVSSSPVDVPQVKYGY 519 (789)
Q Consensus 455 g~~l~~~~~~~-----~~~~l~~~dl~tg~~~~lt~~~~-~~~~-~~~s~dg~~l~~~~ss~~~p~~i~~~~ 519 (789)
|++|++.+... ....||.+| +|+.++++.... .+.. ..|+ |+ ++++.+... ...|+ ++
T Consensus 226 g~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~~~~-~~~l~-~~ 290 (347)
T 2gop_A 226 GERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLFEEG-SVNLY-IW 290 (347)
T ss_dssp SSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE--EEEEEEETT-EEEEE-EE
T ss_pred CCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc--EEEEEecCC-cEEEE-Ec
Confidence 99998887554 246899999 788888887643 3332 4566 65 665554443 34566 55
|
| >1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1 interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-15 Score=149.82 Aligned_cols=161 Identities=16% Similarity=0.267 Sum_probs=118.1
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH--HHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK--SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~--~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
.+|..++++.+.|. ..++.|+||++||++.+ ...|.. ....|+++||.|+++|+|| +|.+..........
T Consensus 14 ~~g~~l~~~~~~p~---~~~~~~~vv~~hG~~~~--~~~~~~~~~~~~l~~~G~~v~~~d~~g---~g~s~~~~~~~~~~ 85 (210)
T 1imj_A 14 VQGQALFFREALPG---SGQARFSVLLLHGIRFS--SETWQNLGTLHRLAQAGYRAVAIDLPG---LGHSKEAAAPAPIG 85 (210)
T ss_dssp ETTEEECEEEEECS---SSCCSCEEEECCCTTCC--HHHHHHHTHHHHHHHTTCEEEEECCTT---SGGGTTSCCSSCTT
T ss_pred eCCeEEEEEEeCCC---CCCCCceEEEECCCCCc--cceeecchhHHHHHHCCCeEEEecCCC---CCCCCCCCCcchhh
Confidence 37889999999886 34578999999997764 455665 4778999999999999998 55443322111111
Q ss_pred cc-cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhcc
Q 003886 649 SQ-DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 727 (789)
Q Consensus 649 ~~-~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~ 727 (789)
.. ..+++.+.++.+ +.++++++|||+||.+++.++.++|++++++|+.+|......
T Consensus 86 ~~~~~~~~~~~~~~~------~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~v~~~~~~~~~~----------------- 142 (210)
T 1imj_A 86 ELAPGSFLAAVVDAL------ELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKI----------------- 142 (210)
T ss_dssp SCCCTHHHHHHHHHH------TCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGGS-----------------
T ss_pred hcchHHHHHHHHHHh------CCCCeEEEEECchHHHHHHHHHhCccccceEEEeCCCccccc-----------------
Confidence 11 114555555543 457899999999999999999999999999999998753100
Q ss_pred CccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 728 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
....+.++++|+|+++|++|. +|++.+.++ +.+++
T Consensus 143 -----------------------~~~~~~~~~~p~l~i~g~~D~-~~~~~~~~~-~~~~~ 177 (210)
T 1imj_A 143 -----------------------NAANYASVKTPALIVYGDQDP-MGQTSFEHL-KQLPN 177 (210)
T ss_dssp -----------------------CHHHHHTCCSCEEEEEETTCH-HHHHHHHHH-TTSSS
T ss_pred -----------------------cchhhhhCCCCEEEEEcCccc-CCHHHHHHH-hhCCC
Confidence 011234678999999999999 999999988 76654
|
| >2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia eriantha} PDB: 2o7v_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-16 Score=166.50 Aligned_cols=124 Identities=19% Similarity=0.213 Sum_probs=96.7
Q ss_pred eeEEEEEEecCCC-CCCCCCcEEEEEcCCCCCCCc---hhhHHHHHHHH-HCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 574 KPFEAIFVSSSHK-KDCSCDPLIVVLHGGPHSVSL---SSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 574 ~~l~~~~~~P~~~-~~~~~~P~vv~~HGg~~~~~~---~~~~~~~~~la-~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
..+.+.++.|++. ...++.|+||++|||++.... ..|...+..|+ +.||.|+++||||.+++. .
T Consensus 64 ~~~~~~~~~P~~~~~~~~~~p~vv~~HGgg~~~~~~~~~~~~~~~~~la~~~g~~vv~~d~rg~~~~~-----------~ 132 (338)
T 2o7r_A 64 HNTFVRLFLPRHALYNSAKLPLVVYFHGGGFILFSAASTIFHDFCCEMAVHAGVVIASVDYRLAPEHR-----------L 132 (338)
T ss_dssp TTEEEEEEEEGGGGGSSCCEEEEEEECCSTTTSCCTTBHHHHHHHHHHHHHHTCEEEEEECCCTTTTC-----------T
T ss_pred CCeEEEEEeCCCCCcCCCCceEEEEEcCCcCcCCCCCchhHHHHHHHHHHHCCcEEEEecCCCCCCCC-----------C
Confidence 3466778888643 235788999999998854322 23666777887 789999999999854321 1
Q ss_pred cccHHHHHHHHHHHHHcC------CCCCccEEEEEcCccHHHHHHHHHhCCC--------ceeEEEEeCCccch
Q 003886 649 SQDVNDVLTAIDHVIDMG------LANPSKVTVVGGSHGGFLTTHLIGQAPD--------KFVAAAARNPLCNL 708 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~------~~d~~rv~l~G~S~GG~~a~~~~~~~p~--------~~~a~v~~~pv~~~ 708 (789)
...++|+.++++|+.++. .+|.+|++|+|||+||++++.++.++|+ +++++|+.+|+.+.
T Consensus 133 ~~~~~d~~~~~~~l~~~~~~~~~~~~d~~~v~l~G~S~GG~ia~~~a~~~~~~~~~~~~~~v~~~vl~~p~~~~ 206 (338)
T 2o7r_A 133 PAAYDDAMEALQWIKDSRDEWLTNFADFSNCFIMGESAGGNIAYHAGLRAAAVADELLPLKIKGLVLDEPGFGG 206 (338)
T ss_dssp THHHHHHHHHHHHHHTCCCHHHHHHEEEEEEEEEEETHHHHHHHHHHHHHHTTHHHHTTCCEEEEEEESCCCCC
T ss_pred chHHHHHHHHHHHHHhCCcchhhccCCcceEEEEEeCccHHHHHHHHHHhccccccCCCCceeEEEEECCccCC
Confidence 234789999999998762 2577899999999999999999998887 89999999998754
|
| >3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, tuberculosis, O LIPW, heroin esterase; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=160.18 Aligned_cols=128 Identities=18% Similarity=0.249 Sum_probs=102.1
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CchhhHHHHHHHH-HCCcEEEEEcCCCCCCCCchhhccCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLP 644 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~-~~~~~~~~~~~la-~~Gy~V~~~d~rGs~G~G~~~~~~~~ 644 (789)
++...+|..+.++++.|.+ ++.|+||++|||++.. ....+...+..|+ +.||.|+++|||+++++.
T Consensus 64 ~i~~~~G~~i~~~~~~P~~----~~~p~vv~~HGgG~~~g~~~~~~~~~~~la~~~g~~vv~~dyr~~p~~~-------- 131 (317)
T 3qh4_A 64 VVTGEAGRPVPVRIYRAAP----TPAPVVVYCHAGGFALGNLDTDHRQCLELARRARCAVVSVDYRLAPEHP-------- 131 (317)
T ss_dssp EEECTTSCEEEEEEEECSC----SSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSC--------
T ss_pred EecCCCCCeEEEEEEecCC----CCCcEEEEECCCcCccCChHHHHHHHHHHHHHcCCEEEEecCCCCCCCC--------
Confidence 5566788899999999963 6789999999987533 2335666777777 569999999999865532
Q ss_pred CCCCcccHHHHHHHHHHHHHc---CCCCCccEEEEEcCccHHHHHHHHHhCCC----ceeEEEEeCCccchh
Q 003886 645 GKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLA 709 (789)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~~~~~p~----~~~a~v~~~pv~~~~ 709 (789)
....++|+.++++|+.++ ..+|++||+|+|+|+||++++.++.++++ .++++++.+|+++..
T Consensus 132 ---~p~~~~D~~~a~~~l~~~~~~~~~d~~ri~l~G~S~GG~lA~~~a~~~~~~~~~~~~~~vl~~p~~~~~ 200 (317)
T 3qh4_A 132 ---YPAALHDAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGLAHGAADGSLPPVIFQLLHQPVLDDR 200 (317)
T ss_dssp ---TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTSSCCCCEEEEESCCCCSS
T ss_pred ---CchHHHHHHHHHHHHHhhHHhhCCCcceEEEEEECHHHHHHHHHHHHHHhcCCCCeeEEEEECceecCC
Confidence 133478999999999885 34788999999999999999999987554 499999999998753
|
| >3r0v_A Alpha/beta hydrolase fold protein; structural genomics, PSI-biology, protein structure initiati alpha/beta hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.8e-15 Score=150.27 Aligned_cols=194 Identities=14% Similarity=0.160 Sum_probs=125.3
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
+...+|.+++....- +.|.||++||++.+ ...|......|+ +||.|+++|+|| +|.+....
T Consensus 7 ~~~~~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~l~-~~~~vi~~d~~G---~G~S~~~~----- 67 (262)
T 3r0v_A 7 VPSSDGTPIAFERSG--------SGPPVVLVGGALST--RAGGAPLAERLA-PHFTVICYDRRG---RGDSGDTP----- 67 (262)
T ss_dssp EECTTSCEEEEEEEE--------CSSEEEEECCTTCC--GGGGHHHHHHHT-TTSEEEEECCTT---STTCCCCS-----
T ss_pred EEcCCCcEEEEEEcC--------CCCcEEEECCCCcC--hHHHHHHHHHHh-cCcEEEEEecCC---CcCCCCCC-----
Confidence 455678888755442 24789999997764 456777777887 899999999998 55443211
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcch--hhhh
Q 003886 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC--YVES 725 (789)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~--~~~~ 725 (789)
...++++.+.+..+++. ++ +++.++|||+||.+++.++.++| +++++|+.+|............ ..+. ....
T Consensus 68 -~~~~~~~~~~~~~~~~~--l~-~~~~l~G~S~Gg~ia~~~a~~~p-~v~~lvl~~~~~~~~~~~~~~~-~~~~~~~~~~ 141 (262)
T 3r0v_A 68 -PYAVEREIEDLAAIIDA--AG-GAAFVFGMSSGAGLSLLAAASGL-PITRLAVFEPPYAVDDSRPPVP-PDYQTRLDAL 141 (262)
T ss_dssp -SCCHHHHHHHHHHHHHH--TT-SCEEEEEETHHHHHHHHHHHTTC-CEEEEEEECCCCCCSTTSCCCC-TTHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHh--cC-CCeEEEEEcHHHHHHHHHHHhCC-CcceEEEEcCCcccccccchhh-hHHHHHHHHH
Confidence 34566777666666665 34 79999999999999999999999 9999999998764322111000 0000 0000
Q ss_pred ccC--------ccccccCCCCChhhHHHHH------------------------hcCccccCCCCCCCEEEEEeCCCCCC
Q 003886 726 YGS--------KGKDSFTESPSVEDLTRFH------------------------SKSPISHISKVKTPTIFLLGAQDLRV 773 (789)
Q Consensus 726 ~~~--------~~~~~~~~~~~~~~~~~~~------------------------~~sp~~~~~~i~~P~Lii~G~~D~~v 773 (789)
+.. .........+ .+..+.+. ...+...+.++++|+|+++|++|..+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~ 220 (262)
T 3r0v_A 142 LAEGRRGDAVTYFMTEGVGVP-PDLVAQMQQAPMWPGMEAVAHTLPYDHAVMGDNTIPTARFASISIPTLVMDGGASPAW 220 (262)
T ss_dssp HHTTCHHHHHHHHHHHTSCCC-HHHHHHHHTSTTHHHHHHTGGGHHHHHHHHTTSCCCHHHHTTCCSCEEEEECTTCCHH
T ss_pred hhccchhhHHHHHhhcccCCC-HHHHHHHHhhhcccchHHHHhhhhhhhhhhhcCCCCHHHcCcCCCCEEEEeecCCCCC
Confidence 000 0000000111 11111111 01223457889999999999999999
Q ss_pred ChHHHHHHHHHCCC
Q 003886 774 PVSNGLQVIYHIPF 787 (789)
Q Consensus 774 p~~~~~~l~~~l~~ 787 (789)
|++.+.++.+.+++
T Consensus 221 ~~~~~~~~~~~~~~ 234 (262)
T 3r0v_A 221 IRHTAQELADTIPN 234 (262)
T ss_dssp HHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHhCCC
Confidence 99999999998865
|
| >4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-16 Score=155.80 Aligned_cols=159 Identities=14% Similarity=0.086 Sum_probs=108.3
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHH---
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID--- 664 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~--- 664 (789)
..+..++||++||.+. ....|....+.|...|+.|++||.+|...|+..+..... .....+++..+.++.+++
T Consensus 18 ~~~a~~~Vv~lHG~G~--~~~~~~~l~~~l~~~~~~v~~P~~~g~~w~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~ 93 (210)
T 4h0c_A 18 VQRAKKAVVMLHGRGG--TAADIISLQKVLKLDEMAIYAPQATNNSWYPYSFMAPVQ--QNQPALDSALALVGEVVAEIE 93 (210)
T ss_dssp TTTCSEEEEEECCTTC--CHHHHHGGGGTSSCTTEEEEEECCGGGCSSSSCTTSCGG--GGTTHHHHHHHHHHHHHHHHH
T ss_pred cccCCcEEEEEeCCCC--CHHHHHHHHHHhCCCCeEEEeecCCCCCccccccCCCcc--cchHHHHHHHHHHHHHHHHHH
Confidence 3556799999999544 244555556677778999999999876555443322111 111223444444444332
Q ss_pred cCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHH
Q 003886 665 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLT 744 (789)
Q Consensus 665 ~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (789)
...+|++||+|+|+|+||++++.++.++|++|+++|+.++....... .. .
T Consensus 94 ~~~i~~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~vv~~sg~l~~~~~--------------------------~~-~--- 143 (210)
T 4h0c_A 94 AQGIPAEQIYFAGFSQGACLTLEYTTRNARKYGGIIAFTGGLIGQEL--------------------------AI-G--- 143 (210)
T ss_dssp HTTCCGGGEEEEEETHHHHHHHHHHHHTBSCCSEEEEETCCCCSSSC--------------------------CG-G---
T ss_pred HhCCChhhEEEEEcCCCcchHHHHHHhCcccCCEEEEecCCCCChhh--------------------------hh-h---
Confidence 23489999999999999999999999999999999998874310000 00 0
Q ss_pred HHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 745 RFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 745 ~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
. ......++|+|++||++|++||+++++++++.|++
T Consensus 144 ---~----~~~~~~~~Pvl~~hG~~D~~vp~~~~~~~~~~L~~ 179 (210)
T 4h0c_A 144 ---N----YKGDFKQTPVFISTGNPDPHVPVSRVQESVTILED 179 (210)
T ss_dssp ---G----CCBCCTTCEEEEEEEESCTTSCHHHHHHHHHHHHH
T ss_pred ---h----hhhhccCCceEEEecCCCCccCHHHHHHHHHHHHH
Confidence 0 00112357999999999999999999999998864
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.2e-15 Score=173.21 Aligned_cols=268 Identities=13% Similarity=0.102 Sum_probs=166.5
Q ss_pred EEEeCCCCCeEEEEecCCCC-CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCC
Q 003886 158 AVVPSPSGSKLLVVRNPENE-SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (789)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~~-~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~ 235 (789)
.+.++|||++++|+++.++. ...+|.+. .+++.+.+++...-..+. ......++|||||++|||......
T Consensus 72 ~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~---~~~~~~~~~SPDG~~la~~~~~~G----- 143 (695)
T 2bkl_A 72 VSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDG---TVSLGTWAVSWDGKKVAFAQKPNA----- 143 (695)
T ss_dssp ECCCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSS---CEEEEEEEECTTSSEEEEEEEETT-----
T ss_pred CCCCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCC---CEEEEEEEECCCCCEEEEEECCCC-----
Confidence 34556999999999976532 45678777 566777777653211100 012378999999999999876431
Q ss_pred ccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEE
Q 003886 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 315 (789)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f 315 (789)
.....|+++|+++|+..... .........++|||||+. |+|
T Consensus 144 ----------------------------------~~~~~i~v~dl~tg~~~~~~-~~~~~~~~~~~wspDg~~----l~~ 184 (695)
T 2bkl_A 144 ----------------------------------ADEAVLHVIDVDSGEWSKVD-VIEGGKYATPKWTPDSKG----FYY 184 (695)
T ss_dssp ----------------------------------CSCCEEEEEETTTCCBCSSC-CBSCCTTCCCEECTTSSE----EEE
T ss_pred ----------------------------------CceEEEEEEECCCCCCcCCc-ccCcccccceEEecCCCE----EEE
Confidence 13478999999999875111 111222368999999999 999
Q ss_pred EeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe--eecCCC---CCccCcceecCCCCEEEEEe
Q 003886 316 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLTES---ISSAFFPRFSPDGKFLVFLS 390 (789)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~Lt~~---~~~~~~p~~SpDG~~la~~s 390 (789)
++..... .+.....++...||++++ .++.. +.+... ......+.|||||++|++.+
T Consensus 185 ~~~d~~~--~~~~~~~~~~~~v~~~~l-----------------~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~ 245 (695)
T 2bkl_A 185 EWLPTDP--SIKVDERPGYTTIRYHTL-----------------GTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYI 245 (695)
T ss_dssp EECCCCT--TSCGGGGGGGCEEEEEET-----------------TSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEE
T ss_pred EEecCCC--CCccccCCCCCEEEEEEC-----------------CCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEE
Confidence 9864320 000111234557999998 44432 233222 23567899999999999988
Q ss_pred cCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeC-CeEE
Q 003886 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-SSQV 469 (789)
Q Consensus 391 ~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~-~~~~ 469 (789)
.... ...+||++|..++..+.++.... ....+.| +||+ +|+.++.+ ....
T Consensus 246 ~~~~-------~~~~l~~~~~~~~~~~~l~~~~~--------------------~~~~~~~-~~g~-l~~~s~~~~~~~~ 296 (695)
T 2bkl_A 246 LRGW-------SENDVYWKRPGEKDFRLLVKGVG--------------------AKYEVHA-WKDR-FYVLTDEGAPRQR 296 (695)
T ss_dssp EETT-------TEEEEEEECTTCSSCEEEEECSS--------------------CCEEEEE-ETTE-EEEEECTTCTTCE
T ss_pred eCCC-------CceEEEEEcCCCCceEEeecCCC--------------------ceEEEEe-cCCc-EEEEECCCCCCCE
Confidence 6541 34579999876554433322110 1112334 7888 88887644 4678
Q ss_pred EEEEECCCCcE---EEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 470 IISVNVSSGEL---LRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 470 l~~~dl~tg~~---~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
|+.+|+++++. +.++..........++..++.++++..... -..|+++++.
T Consensus 297 l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg-~~~l~~~~~~ 350 (695)
T 2bkl_A 297 VFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDA-TSEVRVATLK 350 (695)
T ss_dssp EEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETT-EEEEEEEETT
T ss_pred EEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECC-EEEEEEEeCC
Confidence 99999988763 666655422222234444677777765543 3467777754
|
| >3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase fold, hydrolase; 1.20A {Bacillus SP} PDB: 3rli_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=156.99 Aligned_cols=183 Identities=17% Similarity=0.252 Sum_probs=120.2
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
+.|+||++||.+.+ ...|......|+++||.|+++|+|| +|.+...... .......+|+.++++++.++ .
T Consensus 39 ~~~~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~G---~G~s~~~~~~-~~~~~~~~d~~~~i~~l~~~----~ 108 (270)
T 3rm3_A 39 GPVGVLLVHGFTGT--PHSMRPLAEAYAKAGYTVCLPRLKG---HGTHYEDMER-TTFHDWVASVEEGYGWLKQR----C 108 (270)
T ss_dssp SSEEEEEECCTTCC--GGGTHHHHHHHHHTTCEEEECCCTT---CSSCHHHHHT-CCHHHHHHHHHHHHHHHHTT----C
T ss_pred CCeEEEEECCCCCC--hhHHHHHHHHHHHCCCEEEEeCCCC---CCCCcccccc-CCHHHHHHHHHHHHHHHHhh----C
Confidence 45999999997664 5567788889999999999999998 4443321111 11122257788888887665 6
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCC----CCcchhhhhccCcc----cc--ccCCCCCh
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD----IPDWCYVESYGSKG----KD--SFTESPSV 740 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~----~~~~~~~~~~~~~~----~~--~~~~~~~~ 740 (789)
++++|+|||+||++++.++.++|+ ++++|+.+|..+......... ...+. ..+.... .. .+...+ .
T Consensus 109 ~~i~l~G~S~Gg~~a~~~a~~~p~-v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~ 184 (270)
T 3rm3_A 109 QTIFVTGLSMGGTLTLYLAEHHPD-ICGIVPINAAVDIPAIAAGMTGGGELPRYL--DSIGSDLKNPDVKELAYEKTP-T 184 (270)
T ss_dssp SEEEEEEETHHHHHHHHHHHHCTT-CCEEEEESCCSCCHHHHHHSCC---CCSEE--ECCCCCCSCTTCCCCCCSEEE-H
T ss_pred CcEEEEEEcHhHHHHHHHHHhCCC-ccEEEEEcceecccccccchhcchhHHHHH--HHhCccccccchHhhcccccC-h
Confidence 789999999999999999999999 999999999776543321100 01110 0000000 00 000000 1
Q ss_pred hhHHHHHh--cCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 741 EDLTRFHS--KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 741 ~~~~~~~~--~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.....+.. ......+.++++|+|+++|++|..+|++.+.++++.+++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~~~~ 233 (270)
T 3rm3_A 185 ASLLQLARLMAQTKAKLDRIVCPALIFVSDEDHVVPPGNADIIFQGISS 233 (270)
T ss_dssp HHHHHHHHHHHHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHHHhhhhhcCCCEEEEECCCCcccCHHHHHHHHHhcCC
Confidence 11111110 112245778899999999999999999999999999875
|
| >1fj2_A Protein (acyl protein thioesterase 1); alpha/beta hydrolase, serine hydrolase, SAD, anomalous diffr hydrolase; 1.50A {Homo sapiens} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=151.02 Aligned_cols=159 Identities=14% Similarity=0.150 Sum_probs=113.1
Q ss_pred EEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCC----------------CCCCchhhccC
Q 003886 580 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS----------------LGFGEEALQSL 643 (789)
Q Consensus 580 ~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs----------------~G~G~~~~~~~ 643 (789)
++.|+ ..++.|+||++||.+.+ ...|......|+++||.|+++|.+|. .|+...
T Consensus 14 ~~~p~---~~~~~~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~w~d~~g~~~~----- 83 (232)
T 1fj2_A 14 AIVPA---ARKATAAVIFLHGLGDT--GHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPD----- 83 (232)
T ss_dssp EEECC---SSCCSEEEEEECCSSSC--HHHHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTT-----
T ss_pred cccCC---CCCCCceEEEEecCCCc--cchHHHHHHHHhcCCcEEEecCCCccccccccccccccccccccCCcc-----
Confidence 44565 45678999999997663 45666677778778999999854430 001100
Q ss_pred CCCCCcc----cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCc
Q 003886 644 PGKVGSQ----DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD 719 (789)
Q Consensus 644 ~~~~~~~----~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~ 719 (789)
...... ..+|+.+.++++.+ ..+|.++++|+|||+||++++.++.++|++++++|+.+|........
T Consensus 84 -~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~------- 154 (232)
T 1fj2_A 84 -SQEDESGIKQAAENIKALIDQEVK-NGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASF------- 154 (232)
T ss_dssp -CCBCHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGS-------
T ss_pred -cccccHHHHHHHHHHHHHHHHHhc-CCCCcCCEEEEEECHHHHHHHHHHHhCCCceeEEEEeecCCCCCccc-------
Confidence 001111 23556666666655 34788999999999999999999999999999999999976432110
Q ss_pred chhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 720 WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
+ .....+.++++|+|++||++|..+|++++.++++.++
T Consensus 155 ------------------~-----------~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~l~ 192 (232)
T 1fj2_A 155 ------------------P-----------QGPIGGANRDISILQCHGDCDPLVPLMFGSLTVEKLK 192 (232)
T ss_dssp ------------------C-----------SSCCCSTTTTCCEEEEEETTCSSSCHHHHHHHHHHHH
T ss_pred ------------------c-----------ccccccccCCCCEEEEecCCCccCCHHHHHHHHHHHH
Confidence 0 0012356788999999999999999999999988774
|
| >2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase, putative lipase; HET: CME CSO; 1.90A {Saccharomyces cerevisiae} PDB: 2y6v_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-15 Score=163.53 Aligned_cols=137 Identities=18% Similarity=0.165 Sum_probs=94.7
Q ss_pred eeecCCCeeEEEEEEecCC---CCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHH----HCCc---EEEEEcCCCCCCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSH---KKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLS----SVGY---SLLIVNYRGSLGFG 636 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~---~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la----~~Gy---~V~~~d~rGs~G~G 636 (789)
.+...+|..+++..+.|.+ ..+.++.|+||++||.+.+ ...|...+..|+ ..|| .|+++|+|| +|
T Consensus 24 ~~~~~dg~~l~~~~~g~~~~~~~~~~~~~~~vvllHG~~~~--~~~~~~~~~~L~~~~~~~G~~~~~vi~~D~~G---~G 98 (398)
T 2y6u_A 24 TLCATDRLELTYDVYTSAERQRRSRTATRLNLVFLHGSGMS--KVVWEYYLPRLVAADAEGNYAIDKVLLIDQVN---HG 98 (398)
T ss_dssp BSSTTCCCEEEEEEEEESCTTTCCTTCEEEEEEEECCTTCC--GGGGGGGGGGSCCCBTTTTEEEEEEEEECCTT---SH
T ss_pred cccCCCceEEEEEEEecCCCCCCCCCCCCCeEEEEcCCCCc--HHHHHHHHHHHHHhhhhcCcceeEEEEEcCCC---CC
Confidence 4567789999999998863 1123456899999997764 456666677787 4589 999999998 66
Q ss_pred chhhccCCCCCCcccHHHHHHHHHHHHHc-C---CCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccch
Q 003886 637 EEALQSLPGKVGSQDVNDVLTAIDHVIDM-G---LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708 (789)
Q Consensus 637 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~---~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~ 708 (789)
.+.............+.+..+.+..+++. . .++..+++|+|||+||++++.++.++|++++++|+.+|....
T Consensus 99 ~S~~~~~~~~~~~~~~~~~~~dl~~~l~~~~~~~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 174 (398)
T 2y6u_A 99 DSAVRNRGRLGTNFNWIDGARDVLKIATCELGSIDSHPALNVVIGHSMGGFQALACDVLQPNLFHLLILIEPVVIT 174 (398)
T ss_dssp HHHHHTTTTBCSCCCHHHHHHHHHHHHHHHTCSSTTCSEEEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSC
T ss_pred CCCCCCccccCCCCCcchHHHHHHHHHHHhcccccccCCceEEEEEChhHHHHHHHHHhCchheeEEEEecccccc
Confidence 66543211011122343433333333332 1 134455999999999999999999999999999999987653
|
| >3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 2.25A {Pseudomonas aeruginosa} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-14 Score=148.95 Aligned_cols=202 Identities=15% Similarity=0.229 Sum_probs=125.5
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
+...+|..++....-+ ...|+||++||.+.+ ...|......|++ +|.|+++|+|| +|.+....
T Consensus 9 ~~~~~g~~l~y~~~G~------~~~p~lvl~hG~~~~--~~~w~~~~~~L~~-~~~vi~~D~rG---~G~S~~~~----- 71 (266)
T 3om8_A 9 LATSDGASLAYRLDGA------AEKPLLALSNSIGTT--LHMWDAQLPALTR-HFRVLRYDARG---HGASSVPP----- 71 (266)
T ss_dssp EECTTSCEEEEEEESC------TTSCEEEEECCTTCC--GGGGGGGHHHHHT-TCEEEEECCTT---STTSCCCC-----
T ss_pred EeccCCcEEEEEecCC------CCCCEEEEeCCCccC--HHHHHHHHHHhhc-CcEEEEEcCCC---CCCCCCCC-----
Confidence 3455788887665533 235889999996654 5567777778875 79999999998 66554211
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh----------hhcCCCC
Q 003886 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL----------MVGTTDI 717 (789)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~----------~~~~~~~ 717 (789)
+...++++.+.+..+++. +..+++.|+|||+||.+++.++.++|++++++|+.++...... .......
T Consensus 72 ~~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (266)
T 3om8_A 72 GPYTLARLGEDVLELLDA--LEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAAVLQAEDM 149 (266)
T ss_dssp SCCCHHHHHHHHHHHHHH--TTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSBCCCSHHHHHHHHHHHHCSSS
T ss_pred CCCCHHHHHHHHHHHHHH--hCCCceEEEEEChHHHHHHHHHHhChHhhheeeEecCcccCCchhHHHHHHHHHHccccH
Confidence 123466666666666555 3457899999999999999999999999999999876432100 0000000
Q ss_pred Ccch---hhhhccCccc-------cc----cCCCCCh---hhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHH
Q 003886 718 PDWC---YVESYGSKGK-------DS----FTESPSV---EDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780 (789)
Q Consensus 718 ~~~~---~~~~~~~~~~-------~~----~~~~~~~---~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~ 780 (789)
.... ....+..... +. +...... .....+...+....+.++++|+|+|+|++|..+|++.+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lvi~G~~D~~~~~~~~~~ 229 (266)
T 3om8_A 150 SETAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAYDTVTAASHGEL 229 (266)
T ss_dssp HHHHHHHHHHHSCHHHHHSCCHHHHHHHHHHHTSCHHHHHHHHHHHHTCBCTTTGGGCCSCEEEEEETTCSSSCHHHHHH
T ss_pred HHHHHHHHHHhcChhhhhcChHHHHHHHHHHHhCCHHHHHHHHHHhhccchhhHhcCCCCCEEEEEeCCCCCCCHHHHHH
Confidence 0000 0000000000 00 0000000 0001111222334578899999999999999999999999
Q ss_pred HHHHCCCC
Q 003886 781 VIYHIPFS 788 (789)
Q Consensus 781 l~~~l~~~ 788 (789)
+.+.++++
T Consensus 230 l~~~ip~a 237 (266)
T 3om8_A 230 IAASIAGA 237 (266)
T ss_dssp HHHHSTTC
T ss_pred HHHhCCCC
Confidence 99998764
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.6e-15 Score=173.84 Aligned_cols=268 Identities=12% Similarity=0.120 Sum_probs=167.8
Q ss_pred EEEeCCCCCeEEEEecCCCC-CCeEEEEe-c---CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 158 AVVPSPSGSKLLVVRNPENE-SPIQFELW-S---QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~~-~~~~~~i~-~---~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
.+.++|||++++|+++.++. ...+|.+. . +++.+.+++...-..+. +..+..++|||||++|||...+..
T Consensus 111 ~~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~---~~~~~~~~~SPDG~~la~~~~~~G-- 185 (741)
T 1yr2_A 111 FGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDG---ATALDAWAASDDGRLLAYSVQDGG-- 185 (741)
T ss_dssp ECCCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC-------EEEEEEEECTTSSEEEEEEEETT--
T ss_pred cCCCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCC---CEEEEeEEECCCCCEEEEEEcCCC--
Confidence 44556999999999976532 45678777 4 56667766643211110 012378999999999999876531
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (789)
.....|+++|+++|+.... .........++|||| +.
T Consensus 186 -------------------------------------~e~~~i~v~dl~tg~~~~~--~~~~~~~~~~~wspD-~~---- 221 (741)
T 1yr2_A 186 -------------------------------------SDWRTVKFVGVADGKPLAD--ELKWVKFSGLAWLGN-DA---- 221 (741)
T ss_dssp -------------------------------------CSEEEEEEEETTTCCEEEE--EEEEEESCCCEESTT-SE----
T ss_pred -------------------------------------CceEEEEEEECCCCCCCCc--cCCCceeccEEEECC-CE----
Confidence 0236799999999987654 222223468999999 98
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe--eecCCC---CCccCcceecCCCCEEE
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLTES---ISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~Lt~~---~~~~~~p~~SpDG~~la 387 (789)
|+|++..... +.+.....++...||++++ .++.. +.+... ......+.|||||++|+
T Consensus 222 l~~~~~~~~~-~~~~~~~~~~~~~v~~~~l-----------------gt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~ 283 (741)
T 1yr2_A 222 LLYSRFAEPK-EGQAFQALNYNQTVWLHRL-----------------GTPQSADQPVFATPELPKRGHGASVSSDGRWVV 283 (741)
T ss_dssp EEEEECCCC---------CCCCCEEEEEET-----------------TSCGGGCEEEECCTTCTTCEEEEEECTTSCEEE
T ss_pred EEEEEecCcc-cccccccCCCCCEEEEEEC-----------------CCCchhCEEEeccCCCCeEEEEEEECCCCCEEE
Confidence 9998754321 1111122334567999998 33331 223222 12366899999999999
Q ss_pred EEecCCCCCCCCccccceeEEeecCCC--C-CCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPTN--G-NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 464 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~~--~-~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~ 464 (789)
+.+.+.. ....+||++|+.++ + .+.++.... .. ...++|||+.|+|.++.
T Consensus 284 ~~~~~~~------~~~~~l~~~d~~~~~~~~~~~l~~~~~--------------------~~-~~~~~~dg~~l~~~s~~ 336 (741)
T 1yr2_A 284 ITSSEGT------DPVNTVHVARVTNGKIGPVTALIPDLK--------------------AQ-WDFVDGVGDQLWFVSGD 336 (741)
T ss_dssp EEEECTT------CSCCEEEEEEEETTEECCCEEEECSSS--------------------SC-EEEEEEETTEEEEEECT
T ss_pred EEEEccC------CCcceEEEEECCCCCCcccEEecCCCC--------------------ce-EEEEeccCCEEEEEECC
Confidence 9986541 12468999999775 3 222221110 01 11356899999998876
Q ss_pred CC-eEEEEEEECCCC--cEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 465 GS-SQVIISVNVSSG--ELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 465 ~~-~~~l~~~dl~tg--~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
.+ ...|+.+|++++ +.+.+++.... ....++..++.++++...... ..|+++++.
T Consensus 337 ~~~~~~l~~~d~~~~~~~~~~l~~~~~~-~l~~~~~~~~~lv~~~~~dg~-~~l~~~~~~ 394 (741)
T 1yr2_A 337 GAPLKKIVRVDLSGSTPRFDTVVPESKD-NLESVGIAGNRLFASYIHDAK-SQVLAFDLD 394 (741)
T ss_dssp TCTTCEEEEEECSSSSCEEEEEECCCSS-EEEEEEEEBTEEEEEEEETTE-EEEEEEETT
T ss_pred CCCCCEEEEEeCCCCccccEEEecCCCC-eEEEEEEECCEEEEEEEECCE-EEEEEEeCC
Confidence 53 678999999884 57777765442 223445557778777765443 457777753
|
| >3cn9_A Carboxylesterase; alpha/beta hydrolase fold super-family, hydrolase; HET: 2PE; 2.09A {Pseudomonas aeruginosa} PDB: 3cn7_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-15 Score=150.98 Aligned_cols=153 Identities=15% Similarity=0.138 Sum_probs=110.9
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHH--CCcEEEEEcCCCCC----------------CCCchhhccCCCCCCc
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS--VGYSLLIVNYRGSL----------------GFGEEALQSLPGKVGS 649 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~--~Gy~V~~~d~rGs~----------------G~G~~~~~~~~~~~~~ 649 (789)
..++.|+||++||++.+ ...|......|++ +||.|+++|++|.+ |+|.+. ....
T Consensus 20 ~~~~~~~vv~lHG~~~~--~~~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~------~~~~ 91 (226)
T 3cn9_A 20 APNADACIIWLHGLGAD--RTDFKPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFSPAR------AIDE 91 (226)
T ss_dssp CTTCCEEEEEECCTTCC--GGGGHHHHHHHHHHCTTEEEEECCCCEEECGGGTSCEEECSSCBCCSSSTT------CBCH
T ss_pred CCCCCCEEEEEecCCCC--hHHHHHHHHHHhhcCCCcEEEeecCCCCccccCCCCccccccccccccccc------cccc
Confidence 55678999999997764 5567778888988 99999999987421 222110 1112
Q ss_pred ccHHHHHHHHHHHHHc---CCCCCccEEEEEcCccHHHHHHHHH-hCCCceeEEEEeCCccchhhhhcCCCCCcchhhhh
Q 003886 650 QDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~~~-~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~ 725 (789)
..+.+..+.+..+++. ..+|.++++|+|||+||++++.++. ++|++++++|+.+|..+.....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~~~~------------- 158 (226)
T 3cn9_A 92 DQLNASADQVIALIDEQRAKGIAAERIILAGFSQGGAVVLHTAFRRYAQPLGGVLALSTYAPTFDDL------------- 158 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHHTCSSCCSEEEEESCCCGGGGGC-------------
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCcccEEEEEECHHHHHHHHHHHhcCccCcceEEEecCcCCCchhh-------------
Confidence 2234444444433332 2478899999999999999999999 9999999999999976532110
Q ss_pred ccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
+. ...++++|+|+++|++|..+|++++.++++.+++
T Consensus 159 ----------------------~~----~~~~~~~P~lii~G~~D~~~~~~~~~~~~~~l~~ 194 (226)
T 3cn9_A 159 ----------------------AL----DERHKRIPVLHLHGSQDDVVDPALGRAAHDALQA 194 (226)
T ss_dssp ----------------------CC----CTGGGGCCEEEEEETTCSSSCHHHHHHHHHHHHH
T ss_pred ----------------------hh----cccccCCCEEEEecCCCCccCHHHHHHHHHHHHH
Confidence 00 1145678999999999999999999999988763
|
| >3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic, dimer, archaea, R267G, hydro; 1.65A {Sulfolobus tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-15 Score=158.52 Aligned_cols=127 Identities=17% Similarity=0.124 Sum_probs=98.8
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCC-CCchhhHHHHHHHHH-CCcEEEEEcCCCCCCCCchhhccCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS-VSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLP 644 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~-~~~~~~~~~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~~ 644 (789)
.+...+| .+.+.+|.|.+ .++.|+||++|||++. .....|...+..|++ .||.|+++||||.+.+.
T Consensus 69 ~i~~~~~-~i~~~iy~P~~---~~~~p~vv~~HGGg~~~g~~~~~~~~~~~La~~~g~~Vv~~Dyrg~~~~~-------- 136 (323)
T 3ain_A 69 TIPGSET-NIKARVYYPKT---QGPYGVLVYYHGGGFVLGDIESYDPLCRAITNSCQCVTISVDYRLAPENK-------- 136 (323)
T ss_dssp EEECSSS-EEEEEEEECSS---CSCCCEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTSC--------
T ss_pred EecCCCC-eEEEEEEecCC---CCCCcEEEEECCCccccCChHHHHHHHHHHHHhcCCEEEEecCCCCCCCC--------
Confidence 3344455 89999999973 4678999999998743 234467777788886 49999999999854321
Q ss_pred CCCCcccHHHHHHHHHHHHHcCC-C-CCccEEEEEcCccHHHHHHHHHhCCCce---eEEEEeCCccch
Q 003886 645 GKVGSQDVNDVLTAIDHVIDMGL-A-NPSKVTVVGGSHGGFLTTHLIGQAPDKF---VAAAARNPLCNL 708 (789)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~~-~-d~~rv~l~G~S~GG~~a~~~~~~~p~~~---~a~v~~~pv~~~ 708 (789)
....++|+.++++++.+... + |.+||+|+|+|+||.+++.++.+++++. +++|+.+|+.+.
T Consensus 137 ---~p~~~~d~~~~~~~l~~~~~~lgd~~~i~l~G~S~GG~lA~~~a~~~~~~~~~~~~~vl~~p~~~~ 202 (323)
T 3ain_A 137 ---FPAAVVDSFDALKWVYNNSEKFNGKYGIAVGGDSAGGNLAAVTAILSKKENIKLKYQVLIYPAVSF 202 (323)
T ss_dssp ---TTHHHHHHHHHHHHHHHTGGGGTCTTCEEEEEETHHHHHHHHHHHHHHHTTCCCSEEEEESCCCSC
T ss_pred ---CcchHHHHHHHHHHHHHhHHHhCCCceEEEEecCchHHHHHHHHHHhhhcCCCceeEEEEeccccC
Confidence 12347899999999988631 2 7899999999999999999998887766 899999998764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.2e-13 Score=143.31 Aligned_cols=242 Identities=13% Similarity=0.136 Sum_probs=150.4
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCce-eEEEecCCCccccccCCCcccc-eeecCCCCEEEEEeecCCCCCC
Q 003886 158 AVVPSPSGSKLLVVRNPENESPIQFELW-SQSQL-EKEFHVPQTVHGSVYADGWFEG-ISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~-~~~~~~~~~~~g~v~~d~~~~~-~~wSpDg~~la~~~~~~~~~~~ 234 (789)
.++|||||++|++....+ ..++.++ ..++. .+.+...... .. +.|||||++|+ +.....
T Consensus 44 ~~~~s~dg~~l~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~----------~~~~~~s~dg~~l~-~~~~~~---- 105 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFC---QTLVQIETQLEPPKVVAIQEGQSS----------MADVDITPDDQFAV-TVTGLN---- 105 (331)
T ss_dssp EEEECSSSCEEEEEESTT---CEEEEEECSSSSCEEEEEEECSSC----------CCCEEECTTSSEEE-ECCCSS----
T ss_pred eEEEcCCCCEEEEEeCCC---CeEEEEECCCCceeEEecccCCCC----------ccceEECCCCCEEE-EecCCC----
Confidence 889999999888776543 2577666 45554 4444333333 34 89999999988 432210
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~ 314 (789)
....|++||+++++.... ++.......++|+|||+. |+
T Consensus 106 ------------------------------------~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~spdg~~----l~ 143 (331)
T 3u4y_A 106 ------------------------------------HPFNMQSYSFLKNKFIST--IPIPYDAVGIAISPNGNG----LI 143 (331)
T ss_dssp ------------------------------------SSCEEEEEETTTTEEEEE--EECCTTEEEEEECTTSSC----EE
T ss_pred ------------------------------------CcccEEEEECCCCCeEEE--EECCCCccceEECCCCCE----EE
Confidence 124899999999887655 334445678999999998 77
Q ss_pred EEeecCCceeeeeeeeccCCcc-eEEEecccccchhhhhhhhcCCCCCCCe----eecCCCCCccCcceecCCCCEEEEE
Q 003886 315 FVGWSSETRKLGIKYCYNRPCA-LYAVRVSLYKSEASELELKESSSEDLPV----VNLTESISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~-l~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~Lt~~~~~~~~p~~SpDG~~la~~ 389 (789)
++.... .. |+++++. ..+.. ..+..........+|||||++|++.
T Consensus 144 ~~~~~~--------------~~~i~~~~~~----------------~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 193 (331)
T 3u4y_A 144 LIDRSS--------------ANTVRRFKID----------------ADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVA 193 (331)
T ss_dssp EEEETT--------------TTEEEEEEEC----------------TTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEE
T ss_pred EEecCC--------------CceEEEEEEC----------------CCCcEeecCCccccCCCCccceEECCCCCEEEEE
Confidence 665321 23 6666652 11221 1122223346778999999988776
Q ss_pred ecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEE
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (789)
.... ..|++||+.++.... .+..+.. . ..+..+.|+|||++||+... +...
T Consensus 194 ~~~~----------~~v~v~d~~~~~~~~-------~~~~~~~---~-------~~~~~~~~spdg~~l~v~~~--~~~~ 244 (331)
T 3u4y_A 194 NLIG----------NSIGILETQNPENIT-------LLNAVGT---N-------NLPGTIVVSRDGSTVYVLTE--STVD 244 (331)
T ss_dssp ETTT----------TEEEEEECSSTTSCE-------EEEEEEC---S-------SCCCCEEECTTSSEEEEECS--SEEE
T ss_pred eCCC----------CeEEEEECCCCcccc-------eeeeccC---C-------CCCceEEECCCCCEEEEEEc--CCCE
Confidence 6432 469999987755410 0010100 0 12456789999998876543 4556
Q ss_pred EEEEECCCCcEEEecC---C----CCC---ceeEEeeecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 470 IISVNVSSGELLRITP---A----ESN---FSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 470 l~~~dl~tg~~~~lt~---~----~~~---~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
|+.+|+.+++++.+.. . ... .....|++||+.|+++..... .+.+.++.
T Consensus 245 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~---~v~v~d~~ 303 (331)
T 3u4y_A 245 VFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISR---ELKVFTIS 303 (331)
T ss_dssp EEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTT---EEEEEETT
T ss_pred EEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCC---cEEEEEec
Confidence 8889999998844321 1 110 112488999998877765433 36677754
|
| >3d0k_A Putative poly(3-hydroxybutyrate) depolymerase LPQ; alpha-beta-alpha sandwich, structural genomics, PSI-2; 1.83A {Bordetella parapertussis 12822} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-15 Score=157.34 Aligned_cols=131 Identities=19% Similarity=0.256 Sum_probs=97.8
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhh-HHHHHHHHHCCcEEEEEcCCCCC---------CC--Cc
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGSL---------GF--GE 637 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~-~~~~~~la~~Gy~V~~~d~rGs~---------G~--G~ 637 (789)
..+|.++.++++.|.+. ..+.|+||++||+++. ...| ......++++||.|+++|+|+.. |+ |.
T Consensus 34 ~~~~~~l~~~~~~P~~~--~~~~p~vv~lHG~~~~--~~~~~~~~~~~l~~~g~~v~~~d~~~~~~p~~~~~~~g~~~g~ 109 (304)
T 3d0k_A 34 RNADRPFTLNTYRPYGY--TPDRPVVVVQHGVLRN--GADYRDFWIPAADRHKLLIVAPTFSDEIWPGVESYNNGRAFTA 109 (304)
T ss_dssp -CTTCCEEEEEEECTTC--CTTSCEEEEECCTTCC--HHHHHHHTHHHHHHHTCEEEEEECCTTTSCHHHHTTTTTCBCT
T ss_pred CCCCceEEEEEEeCCCC--CCCCcEEEEeCCCCCC--HHHHHHHHHHHHHHCCcEEEEeCCccccCCCccccccCccccc
Confidence 56788999999999743 3568999999998775 3445 44567788999999999999631 22 22
Q ss_pred hhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCC-ceeEEEEeC-Cccc
Q 003886 638 EALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARN-PLCN 707 (789)
Q Consensus 638 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~-~~~a~v~~~-pv~~ 707 (789)
+.. ........++|+.++++++.++..+|.++|+|+|||+||++++.++.++|+ +++++|+.+ |..+
T Consensus 110 s~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~vl~~~~~~~ 178 (304)
T 3d0k_A 110 AGN---PRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAANPGWYT 178 (304)
T ss_dssp TSC---BCCGGGSTTHHHHHHHHHHHHTTSCCCSSEEEEEETHHHHHHHHHHHHSCSTTCSEEEEESCSSCC
T ss_pred cCC---CCcccchHHHHHHHHHHHHHhccCCCCCcEEEEEeChHHHHHHHHHHHCCCCceEEEEEecCcccc
Confidence 211 011122345789999999998767899999999999999999999999985 788888665 5544
|
| >4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=148.91 Aligned_cols=160 Identities=12% Similarity=0.069 Sum_probs=100.2
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHC--CcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~--Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (789)
.|+|||+||...+..+.......+++.++ ||.|+++|++| +|+ +..+.++.++.+ .+
T Consensus 2 mptIl~lHGf~ss~~s~k~~~l~~~~~~~~~~~~v~~pdl~~---~g~----------------~~~~~l~~~~~~--~~ 60 (202)
T 4fle_A 2 MSTLLYIHGFNSSPSSAKATTFKSWLQQHHPHIEMQIPQLPP---YPA----------------EAAEMLESIVMD--KA 60 (202)
T ss_dssp -CEEEEECCTTCCTTCHHHHHHHHHHHHHCTTSEEECCCCCS---SHH----------------HHHHHHHHHHHH--HT
T ss_pred CcEEEEeCCCCCCCCccHHHHHHHHHHHcCCCcEEEEeCCCC---CHH----------------HHHHHHHHHHHh--cC
Confidence 38999999965543322223345567665 49999999987 443 223344444443 35
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhc
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK 749 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (789)
.++|+|+|+|+||++|+.++.++|+...+++...+..+........ ...+ .. .+.+. ....... ...
T Consensus 61 ~~~i~l~G~SmGG~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~---~~~~~--~~~~~~~--~~~ 127 (202)
T 4fle_A 61 GQSIGIVGSSLGGYFATWLSQRFSIPAVVVNPAVRPFELLSDYLGE---NQNP---YT---GQKYV--LESRHIY--DLK 127 (202)
T ss_dssp TSCEEEEEETHHHHHHHHHHHHTTCCEEEESCCSSHHHHGGGGCEE---EECT---TT---CCEEE--ECHHHHH--HHH
T ss_pred CCcEEEEEEChhhHHHHHHHHHhcccchheeeccchHHHHHHhhhh---hccc---cc---ccccc--chHHHHH--HHH
Confidence 6899999999999999999999998877777666544322111000 0000 00 00000 0111111 122
Q ss_pred CccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHC
Q 003886 750 SPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHI 785 (789)
Q Consensus 750 sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l 785 (789)
+....+.++++|+||+||++|.+||++++.++++..
T Consensus 128 ~~~~~~~~~~~P~LiihG~~D~~Vp~~~s~~l~~~~ 163 (202)
T 4fle_A 128 AMQIEKLESPDLLWLLQQTGDEVLDYRQAVAYYTPC 163 (202)
T ss_dssp TTCCSSCSCGGGEEEEEETTCSSSCHHHHHHHTTTS
T ss_pred hhhhhhhccCceEEEEEeCCCCCCCHHHHHHHhhCC
Confidence 344567889999999999999999999999988643
|
| >2uz0_A Esterase, tributyrin esterase; alpha/beta hydrolase, hydrolase, A virulence facto LUNG infection; HET: MSE; 1.7A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-15 Score=156.11 Aligned_cols=195 Identities=13% Similarity=0.103 Sum_probs=118.2
Q ss_pred CCCeeEEEEEEecCCCC----CCCCCcEEEEEcCCCCCCCchhhHH--HHHHH-HHCCcEEEEEcCCCCCCCCchhhccC
Q 003886 571 GAQKPFEAIFVSSSHKK----DCSCDPLIVVLHGGPHSVSLSSYSK--SLAFL-SSVGYSLLIVNYRGSLGFGEEALQSL 643 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~----~~~~~P~vv~~HGg~~~~~~~~~~~--~~~~l-a~~Gy~V~~~d~rGs~G~G~~~~~~~ 643 (789)
..|..+.+.++.|++++ +.+++|+||++||++++ ...|.. ....+ ++.||.|+.+|++++.. .... .
T Consensus 16 ~~~~~~~~~v~~P~~~~~~~~~~~~~p~vv~~HG~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~--~- 89 (263)
T 2uz0_A 16 VLDMEWGVNVLYPDANRVEEPECEDIPVLYLLHGMSGN--HNSWLKRTNVERLLRGTNLIVVMPNTSNGWY-TDTQ--Y- 89 (263)
T ss_dssp TTTEEEEEEEEECC---------CCBCEEEEECCTTCC--TTHHHHHSCHHHHTTTCCCEEEECCCTTSTT-SBCT--T-
T ss_pred hhCCceeEEEEeCCCccccCCcCCCCCEEEEECCCCCC--HHHHHhccCHHHHHhcCCeEEEEECCCCCcc-ccCC--C-
Confidence 46788999999998752 35789999999998764 344544 34444 45899999999987432 1100 0
Q ss_pred CCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcC-CCCCcch-
Q 003886 644 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT-TDIPDWC- 721 (789)
Q Consensus 644 ~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~-~~~~~~~- 721 (789)
...+.....+|+.+.++.+..+..+|.++++|+|||+||++++.++. +|++|+++|+.+|..++..+... .......
T Consensus 90 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 168 (263)
T 2uz0_A 90 GFDYYTALAEELPQVLKRFFPNMTSKREKTFIAGLSMGGYGCFKLAL-TTNRFSHAASFSGALSFQNFSPESQNLGSPAY 168 (263)
T ss_dssp SCBHHHHHHTHHHHHHHHHCTTBCCCGGGEEEEEETHHHHHHHHHHH-HHCCCSEEEEESCCCCSSSCCGGGTTCSCHHH
T ss_pred cccHHHHHHHHHHHHHHHHhccccCCCCceEEEEEChHHHHHHHHHh-CccccceEEEecCCcchhhccccccccccchh
Confidence 00000111234444444443323468899999999999999999999 89999999999998865431100 0000000
Q ss_pred hhhhccCccccccCCCCChhhHHHHHhcCccccCCCCC--CCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 722 YVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK--TPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~--~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
+...++. .. ...+...+|...+.++. +|+|++||++|..++ ++.+++++|+
T Consensus 169 ~~~~~~~---------~~---~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~v~--~~~~~~~~l~ 221 (263)
T 2uz0_A 169 WRGVFGE---------IR---DWTTSPYSLESLAKKSDKKTKLWAWCGEQDFLYE--ANNLAVKNLK 221 (263)
T ss_dssp HHHHHCC---------CS---CTTTSTTSHHHHGGGCCSCSEEEEEEETTSTTHH--HHHHHHHHHH
T ss_pred HHHHcCC---------hh---hhccccCCHHHHHHhccCCCeEEEEeCCCchhhH--HHHHHHHHHH
Confidence 0001111 00 00122344554555554 799999999999884 4677777765
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.1e-14 Score=165.64 Aligned_cols=265 Identities=9% Similarity=0.025 Sum_probs=170.1
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCC----
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN---- 176 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~---- 176 (789)
...+||||+++||+.+.. +.....|+++++.+ ++..+.+... .....++|| ||+.|+|++..+.
T Consensus 133 ~~~~SpDg~~lAy~~~~~----G~~~~~i~v~dl~t--g~~~~~~~~~-----~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 133 QLSFSRDGRILAYSLSLA----GSDWREIHLMDVES--KQPLETPLKD-----VKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp EEEECTTSSEEEEEEECS----SCCEEEEEEEETTT--CSEEEEEEEE-----EESCCCEEE-TTTEEEEEESSCCC---
T ss_pred EEEECCCCCEEEEEEecC----CCceEEEEEEECCC--CCCCccccCC-----ceeccEEEe-CCCEEEEEEecCccccc
Confidence 346789999999987642 34457899988743 3333322111 113578999 9999999987642
Q ss_pred -----CCCeEEEEec-CCc--eeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCc
Q 003886 177 -----ESPIQFELWS-QSQ--LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDK 248 (789)
Q Consensus 177 -----~~~~~~~i~~-~~~--~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (789)
...+++.... +++ ...+....... +.++.++.|||||++|++.+....
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~------~~~~~~~~~SpDg~~l~~~~~~~~------------------ 256 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ------HHRYVGATVTEDDRFLLISAANST------------------ 256 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGG------CCSEEEEEECTTSCEEEEEEESSS------------------
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCC------CeEEEEEEEcCCCCEEEEEEccCC------------------
Confidence 2345655542 222 23333322201 112357899999999999765431
Q ss_pred CCCCCCCcceeeCCcccccCCccCceEEEEEccCC--ceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeee
Q 003886 249 DCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG--EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 326 (789)
Q Consensus 249 ~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g--~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g 326 (789)
...+||++|++++ +.+.+. ........+ |++||++ |+|.++...
T Consensus 257 ----------------------~~~~i~~~d~~~~~~~~~~l~--~~~~~~~~~-~~~~g~~----l~~~t~~~~----- 302 (693)
T 3iuj_A 257 ----------------------SGNRLYVKDLSQENAPLLTVQ--GDLDADVSL-VDNKGST----LYLLTNRDA----- 302 (693)
T ss_dssp ----------------------SCCEEEEEETTSTTCCCEEEE--CSSSSCEEE-EEEETTE----EEEEECTTC-----
T ss_pred ----------------------CCcEEEEEECCCCCCceEEEe--CCCCceEEE-EeccCCE----EEEEECCCC-----
Confidence 2258999999876 566663 332222333 8999999 999986543
Q ss_pred eeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe---eecCCCCCccCcceecCCCCEEEEEecCCCCCCCCcccc
Q 003886 327 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT 403 (789)
Q Consensus 327 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~ 403 (789)
....|+.+|+ +++.. +.|+.+..... .|||+|++|++...++ +.
T Consensus 303 ------~~~~l~~~d~-----------------~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~--------g~ 349 (693)
T 3iuj_A 303 ------PNRRLVTVDA-----------------ANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVD--------AT 349 (693)
T ss_dssp ------TTCEEEEEET-----------------TSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEET--------TE
T ss_pred ------CCCEEEEEeC-----------------CCCCccccEEEecCCCCEE--EEEEECCEEEEEEEEC--------Ce
Confidence 2347999998 44433 56666654443 9999999999988765 35
Q ss_pred ceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe-CCeEEEEEEECCCCcEEE
Q 003886 404 DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGELLR 482 (789)
Q Consensus 404 ~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~-~~~~~l~~~dl~tg~~~~ 482 (789)
.+|+++|+.++..+.+..... ..+..+.+++|++.|+|.... .....||.+|+.+++.+.
T Consensus 350 ~~l~~~d~~g~~~~~l~~p~~-------------------~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~ 410 (693)
T 3iuj_A 350 ARVEQFDYEGKRVREVALPGL-------------------GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISL 410 (693)
T ss_dssp EEEEEECTTSCEEEEECCSSS-------------------SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEE
T ss_pred eEEEEEECCCCeeEEeecCCC-------------------ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEE
Confidence 689999987644322211100 012244577899988887654 345689999999999888
Q ss_pred ecCCC
Q 003886 483 ITPAE 487 (789)
Q Consensus 483 lt~~~ 487 (789)
+....
T Consensus 411 l~~~~ 415 (693)
T 3iuj_A 411 YRASA 415 (693)
T ss_dssp EECCC
T ss_pred EEeCC
Confidence 76543
|
| >3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog, hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas fluorescens} SCOP: c.69.1.12 PDB: 1va4_A 3t52_A* 3t4u_A* 3hi4_A 3hea_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=149.22 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=83.3
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
+...||..++...+- ..|.||++||.+.+ ...|......|+++||.|+++|+|| +|.+... .
T Consensus 3 ~~~~~g~~l~y~~~G--------~g~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G---~G~S~~~-----~ 64 (271)
T 3ia2_A 3 FVAKDGTQIYFKDWG--------SGKPVLFSHGWLLD--ADMWEYQMEYLSSRGYRTIAFDRRG---FGRSDQP-----W 64 (271)
T ss_dssp EECTTSCEEEEEEES--------SSSEEEEECCTTCC--GGGGHHHHHHHHTTTCEEEEECCTT---STTSCCC-----S
T ss_pred EEcCCCCEEEEEccC--------CCCeEEEECCCCCc--HHHHHHHHHHHHhCCceEEEecCCC---CccCCCC-----C
Confidence 455678887654432 23568899997664 5678778889999999999999998 5554321 1
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHh-CCCceeEEEEeCCcc
Q 003886 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLC 706 (789)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~-~p~~~~a~v~~~pv~ 706 (789)
...+++++.+.+..+++. ++.+++.|+||||||++++.++++ .|++++++|+.++..
T Consensus 65 ~~~~~~~~a~d~~~~l~~--l~~~~~~lvGhS~GG~~~~~~~a~~~p~~v~~lvl~~~~~ 122 (271)
T 3ia2_A 65 TGNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVT 122 (271)
T ss_dssp SCCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCC
T ss_pred CCCCHHHHHHHHHHHHHH--hCCCCceEEEEcccHHHHHHHHHHhCCcccceEEEEccCC
Confidence 123345555555555444 355789999999999866665554 589999999988653
|
| >1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP: c.69.1.2 PDB: 1lzk_A | Back alignment and structure |
|---|
Probab=99.61 E-value=8.9e-15 Score=155.38 Aligned_cols=130 Identities=20% Similarity=0.207 Sum_probs=100.3
Q ss_pred eeecCCCe-eEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CchhhHHHHHHHHH-CCcEEEEEcCCCCCCCCchhhccC
Q 003886 567 NLTKGAQK-PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSL 643 (789)
Q Consensus 567 ~~~~~~g~-~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~-~~~~~~~~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~ 643 (789)
.+...+|. .+.++++.|++ ..++.|+||++|||++.. ....|...+..|++ .||.|+++||||.+...
T Consensus 55 ~i~~~~g~~~l~~~~~~P~~--~~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~G~~Vv~~d~rg~~~~~------- 125 (323)
T 1lzl_A 55 SAPGLDGDPEVKIRFVTPDN--TAGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAPETT------- 125 (323)
T ss_dssp EECCSTTCCCEEEEEEEESS--CCSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTTTSC-------
T ss_pred EecCCCCCceeEEEEEecCC--CCCCCcEEEEECCCccccCChhhhHHHHHHHHHhcCcEEEEecCCCCCCCC-------
Confidence 44556776 79999999963 346789999999987432 34456667777876 59999999999854321
Q ss_pred CCCCCcccHHHHHHHHHHHHHc---CCCCCccEEEEEcCccHHHHHHHHHhCCC----ceeEEEEeCCccchh
Q 003886 644 PGKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLA 709 (789)
Q Consensus 644 ~~~~~~~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~~~~~p~----~~~a~v~~~pv~~~~ 709 (789)
.....+|+.++++++.+. ..+|+++|+|+|||+||++++.++.++++ .++++|+.+|+.+..
T Consensus 126 ----~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~ 194 (323)
T 1lzl_A 126 ----FPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLKARDEGVVPVAFQFLEIPELDDR 194 (323)
T ss_dssp ----TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHHCSSCCCEEEEESCCCCTT
T ss_pred ----CCchHHHHHHHHHHHHhhHHHcCCChhheEEEecCchHHHHHHHHHHHhhcCCCCeeEEEEECCccCCC
Confidence 123478999999999874 23678899999999999999999987665 499999999988753
|
| >1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta hydrolase fold, mutant M99T; 1.50A {Streptomyces aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-14 Score=149.73 Aligned_cols=102 Identities=22% Similarity=0.325 Sum_probs=78.0
Q ss_pred cEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCcc
Q 003886 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (789)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (789)
|.||++||.+.+ ...|......|+++||.|+++|+|| +|.+.... ....++++.+.+..+++. ++.++
T Consensus 24 ~pvvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G---~G~S~~~~-----~~~~~~~~a~dl~~~l~~--l~~~~ 91 (277)
T 1brt_A 24 QPVVLIHGFPLS--GHSWERQSAALLDAGYRVITYDRRG---FGQSSQPT-----TGYDYDTFAADLNTVLET--LDLQD 91 (277)
T ss_dssp SEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCCS-----SCCSHHHHHHHHHHHHHH--HTCCS
T ss_pred CeEEEECCCCCc--HHHHHHHHHHHhhCCCEEEEeCCCC---CCCCCCCC-----CCccHHHHHHHHHHHHHH--hCCCc
Confidence 448999997764 5678888889999999999999998 56554211 123455555555555544 34578
Q ss_pred EEEEEcCccHHHHHHHHHhCCC-ceeEEEEeCCcc
Q 003886 673 VTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLC 706 (789)
Q Consensus 673 v~l~G~S~GG~~a~~~~~~~p~-~~~a~v~~~pv~ 706 (789)
+.|+|||+||.+++.++.++|+ +++++|+.++..
T Consensus 92 ~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~ 126 (277)
T 1brt_A 92 AVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLE 126 (277)
T ss_dssp EEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCC
T ss_pred eEEEEECccHHHHHHHHHHcCcceEEEEEEecCcC
Confidence 9999999999999999999998 999999998743
|
| >3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta hydrolase, PLP degradation, E-2- (acetamidomethylene)succinate; 2.26A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=153.61 Aligned_cols=192 Identities=16% Similarity=0.172 Sum_probs=122.5
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~ 651 (789)
+|..++..... +.|+||++||++.+ ...|......|++ ||.|+++|+|| +|.+.. ......
T Consensus 56 ~~~~~~~~~~g--------~~p~vv~lhG~~~~--~~~~~~~~~~L~~-~~~v~~~D~~G---~G~S~~-----~~~~~~ 116 (314)
T 3kxp_A 56 GRITLNVREKG--------SGPLMLFFHGITSN--SAVFEPLMIRLSD-RFTTIAVDQRG---HGLSDK-----PETGYE 116 (314)
T ss_dssp SSCEEEEEEEC--------CSSEEEEECCTTCC--GGGGHHHHHTTTT-TSEEEEECCTT---STTSCC-----CSSCCS
T ss_pred CCEEEEEEecC--------CCCEEEEECCCCCC--HHHHHHHHHHHHc-CCeEEEEeCCC---cCCCCC-----CCCCCC
Confidence 56666654432 26899999997764 4567777777776 69999999998 444331 122345
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhh--------cCCC--CCcch
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV--------GTTD--IPDWC 721 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~--------~~~~--~~~~~ 721 (789)
++++.+.+..+++. ++.++++|+|||+||++++.++.++|++++++|+.+|........ .... ...+.
T Consensus 117 ~~~~~~dl~~~l~~--l~~~~v~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (314)
T 3kxp_A 117 ANDYADDIAGLIRT--LARGHAILVGHSLGARNSVTAAAKYPDLVRSVVAIDFTPYIETEALDALEARVNAGSQLFEDIK 194 (314)
T ss_dssp HHHHHHHHHHHHHH--HTSSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCTTCCHHHHHHHHHHTTTTCSCBSSHH
T ss_pred HHHHHHHHHHHHHH--hCCCCcEEEEECchHHHHHHHHHhChhheeEEEEeCCCCCCCcchhhHHHHHhhhchhhhcCHH
Confidence 67777777777665 345799999999999999999999999999999998865331110 0000 00000
Q ss_pred hhhhccCccccccCCCCChhhHHHHH---------------------------hcCccccCCCCCCCEEEEEeCCCCCCC
Q 003886 722 YVESYGSKGKDSFTESPSVEDLTRFH---------------------------SKSPISHISKVKTPTIFLLGAQDLRVP 774 (789)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~sp~~~~~~i~~P~Lii~G~~D~~vp 774 (789)
....+. ...+... ..+....+. ..+....+.++++|+|+++|++|..+|
T Consensus 195 ~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~~~ 270 (314)
T 3kxp_A 195 AVEAYL---AGRYPNI-PADAIRIRAESGYQPVDGGLRPLASSAAMAQTARGLRSDLVPAYRDVTKPVLIVRGESSKLVS 270 (314)
T ss_dssp HHHHHH---HHHSTTS-CHHHHHHHHHHSEEEETTEEEESSCHHHHHHHHHHTTSCCHHHHHHCCSCEEEEEETTCSSSC
T ss_pred HHHHHH---HhhcccC-chHHHHHHhhhhhcccccccccccChhhhhhhccccCcchhhHhhcCCCCEEEEecCCCccCC
Confidence 000000 0000000 011111111 113344467899999999999999999
Q ss_pred hHHHHHHHHHCCCC
Q 003886 775 VSNGLQVIYHIPFS 788 (789)
Q Consensus 775 ~~~~~~l~~~l~~~ 788 (789)
++.+.++++.+++.
T Consensus 271 ~~~~~~~~~~~~~~ 284 (314)
T 3kxp_A 271 AAALAKTSRLRPDL 284 (314)
T ss_dssp HHHHHHHHHHCTTS
T ss_pred HHHHHHHHHhCCCc
Confidence 99999999988653
|
| >2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme, hydrolase, HSL, alpha/beta hydrolase fold; 2.3A {Uncultured archaeon} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-15 Score=157.57 Aligned_cols=126 Identities=20% Similarity=0.248 Sum_probs=98.0
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCC-CCchhhHHHHHHHHHC-CcEEEEEcCCCCCCCCchhhccCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS-VSLSSYSKSLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLP 644 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~-~~~~~~~~~~~~la~~-Gy~V~~~d~rGs~G~G~~~~~~~~ 644 (789)
.+...+| .+.+.++.|.+ ..+.|+||++||+++. .....|......|+++ ||.|+++||||.+++.
T Consensus 52 ~i~~~~g-~i~~~~~~p~~---~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~d~rg~g~~~-------- 119 (311)
T 2c7b_A 52 HIPVSGG-SIRARVYFPKK---AAGLPAVLYYHGGGFVFGSIETHDHICRRLSRLSDSVVVSVDYRLAPEYK-------- 119 (311)
T ss_dssp EEEETTE-EEEEEEEESSS---CSSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTCEEEEECCCCTTTSC--------
T ss_pred EecCCCC-cEEEEEEecCC---CCCCcEEEEECCCcccCCChhhhHHHHHHHHHhcCCEEEEecCCCCCCCC--------
Confidence 3445556 89999999973 4467999999998732 1344677777888875 9999999999854421
Q ss_pred CCCCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhCCC----ceeEEEEeCCccc
Q 003886 645 GKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCN 707 (789)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~p~----~~~a~v~~~pv~~ 707 (789)
.....+|+.++++++.+.. .+|+++|+|+|||+||++++.++.++|+ +++++|+.+|+.+
T Consensus 120 ---~~~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~ 186 (311)
T 2c7b_A 120 ---FPTAVEDAYAALKWVADRADELGVDPDRIAVAGDSAGGNLAAVVSILDRNSGEKLVKKQVLIYPVVN 186 (311)
T ss_dssp ---TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCC
T ss_pred ---CCccHHHHHHHHHHHHhhHHHhCCCchhEEEEecCccHHHHHHHHHHHHhcCCCCceeEEEECCccC
Confidence 1234789999999998752 3677899999999999999999987665 5999999999887
|
| >4b6g_A Putative esterase; hydrolase, formaldehyde detoxification, alpha/beta serine HY; 1.40A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.7e-16 Score=160.63 Aligned_cols=197 Identities=12% Similarity=0.094 Sum_probs=121.9
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH---HHHHHHHCCcEEEEEcCC--CCC---------C
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYR--GSL---------G 634 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~Gy~V~~~d~r--Gs~---------G 634 (789)
....|.++...++.|++++ .+++|+||++||+++.. ..|.. ....+++.||.|+++|.+ |.. |
T Consensus 29 s~~~~~~~~~~v~~P~~~~-~~~~p~vv~lHG~~~~~--~~~~~~~~~~~~~~~~g~~vv~~d~~~rg~~~~~~~~~~~G 105 (283)
T 4b6g_A 29 AQTLQCEMKFAVYLPNNPE-NRPLGVIYWLSGLTCTE--QNFITKSGFQRYAAEHQVIVVAPDTSPRGEQVPNDDAYDLG 105 (283)
T ss_dssp ETTTTEEEEEEEEECCCTT-CCCEEEEEEECCTTCCS--HHHHHHSCTHHHHHHHTCEEEEECSSCCSTTSCCCSSTTSB
T ss_pred chhhCCceEEEEEeCCCCC-CCCCCEEEEEcCCCCCc--cchhhcccHHHHHhhCCeEEEEecccccccccccccccccc
Confidence 3446788999999998654 67899999999987653 34422 345677889999999964 432 2
Q ss_pred CCchhhccCCC-CC-Cccc-HHHHH-HHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh
Q 003886 635 FGEEALQSLPG-KV-GSQD-VNDVL-TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710 (789)
Q Consensus 635 ~G~~~~~~~~~-~~-~~~~-~~D~~-~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~ 710 (789)
+|.++...... .+ +... ...+. +.+.++.+. +-+.+|++|+|||+||++++.++.++|++|+++++.+|+++...
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~G~S~GG~~a~~~a~~~p~~~~~~~~~s~~~~~~~ 184 (283)
T 4b6g_A 106 QSAGFYLNATEQPWAANYQMYDYILNELPRLIEKH-FPTNGKRSIMGHSMGGHGALVLALRNQERYQSVSAFSPILSPSL 184 (283)
T ss_dssp TTBCTTSBCCSTTGGGTCBHHHHHHTHHHHHHHHH-SCEEEEEEEEEETHHHHHHHHHHHHHGGGCSCEEEESCCCCGGG
T ss_pred CCCcccccCccCcccchhhHHHHHHHHHHHHHHHh-CCCCCCeEEEEEChhHHHHHHHHHhCCccceeEEEECCcccccc
Confidence 33332211111 11 1112 22222 234444333 22468999999999999999999999999999999999886532
Q ss_pred hhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCC--CCCEEEEEeCCCCCCChH-HHHHHHHHCC
Q 003886 711 MVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV--KTPTIFLLGAQDLRVPVS-NGLQVIYHIP 786 (789)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i--~~P~Lii~G~~D~~vp~~-~~~~l~~~l~ 786 (789)
.... ...+...++. ....+...+|...+.++ .+|+||+||++|.+++.. ++.+++++|+
T Consensus 185 ~~~~----~~~~~~~~g~-------------~~~~~~~~~~~~~~~~~~~~~p~li~~G~~D~~~~~~~~~~~~~~~l~ 246 (283)
T 4b6g_A 185 VPWG----EKAFTAYLGK-------------DREKWQQYDANSLIQQGYKVQGMRIDQGLEDEFLPTQLRTEDFIETCR 246 (283)
T ss_dssp SHHH----HHHHHHHHCS-------------CGGGGGGGCHHHHHHHTCCCSCCEEEEETTCTTHHHHTCHHHHHHHHH
T ss_pred Ccch----hhhHHhhcCC-------------chHHHHhcCHHHHHHhcccCCCEEEEecCCCccCcchhhHHHHHHHHH
Confidence 1000 0000111111 00122334444444333 459999999999999872 2677777664
|
| >3b5e_A MLL8374 protein; NP_108484.1, carboxylesterase, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Mesorhizobium loti} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-15 Score=150.89 Aligned_cols=165 Identities=15% Similarity=0.101 Sum_probs=115.1
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccC-CCCC----
Q 003886 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL-PGKV---- 647 (789)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~-~~~~---- 647 (789)
+.+++..++.|. ..+.|+||++||++.+ ...|......|++ ||.|+++|.++..+.|..+.... .+..
T Consensus 15 ~~~l~~~~~~~~----~~~~p~vv~lHG~g~~--~~~~~~~~~~l~~-~~~vv~~d~~~~~~~g~~~~~~~~~~~~~~~~ 87 (223)
T 3b5e_A 15 DLAFPYRLLGAG----KESRECLFLLHGSGVD--ETTLVPLARRIAP-TATLVAARGRIPQEDGFRWFERIDPTRFEQKS 87 (223)
T ss_dssp SSSSCEEEESTT----SSCCCEEEEECCTTBC--TTTTHHHHHHHCT-TSEEEEECCSEEETTEEESSCEEETTEECHHH
T ss_pred CCCceEEEeCCC----CCCCCEEEEEecCCCC--HHHHHHHHHhcCC-CceEEEeCCCCCcCCccccccccCCCcccHHH
Confidence 344555555553 2344999999997664 4466666777765 99999999876322222221100 0000
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhcc
Q 003886 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 727 (789)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~ 727 (789)
.....+++.+.++++.++..+|.++++|+|||+||.+++.++.++|++++++|+.+|.....
T Consensus 88 ~~~~~~~~~~~i~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~------------------ 149 (223)
T 3b5e_A 88 ILAETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLD------------------ 149 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCS------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcHHHHHHHHHHhCccccceEEEecCccCcc------------------
Confidence 01124566777777777644788999999999999999999999999999999999865310
Q ss_pred CccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 728 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
. + .....+++|+|++||++|..||++++. +++.++
T Consensus 150 ~---------~--------------~~~~~~~~P~li~~G~~D~~v~~~~~~-~~~~l~ 184 (223)
T 3b5e_A 150 H---------V--------------PATDLAGIRTLIIAGAADETYGPFVPA-LVTLLS 184 (223)
T ss_dssp S---------C--------------CCCCCTTCEEEEEEETTCTTTGGGHHH-HHHHHH
T ss_pred c---------c--------------ccccccCCCEEEEeCCCCCcCCHHHHH-HHHHHH
Confidence 0 0 122346789999999999999999999 888775
|
| >2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism; 1.90A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=99.60 E-value=8e-15 Score=150.96 Aligned_cols=199 Identities=17% Similarity=0.245 Sum_probs=123.1
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~ 651 (789)
+|..++...+-|. +.+.|.||++||.+.+ ...|......|++ +|.|+++|+|| +|.+.... ....
T Consensus 10 ~g~~l~y~~~g~~----~~~~~~vvllHG~~~~--~~~~~~~~~~L~~-~~~vi~~D~~G---~G~S~~~~-----~~~~ 74 (266)
T 2xua_A 10 NGTELHYRIDGER----HGNAPWIVLSNSLGTD--LSMWAPQVAALSK-HFRVLRYDTRG---HGHSEAPK-----GPYT 74 (266)
T ss_dssp SSSEEEEEEESCS----SSCCCEEEEECCTTCC--GGGGGGGHHHHHT-TSEEEEECCTT---STTSCCCS-----SCCC
T ss_pred CCEEEEEEEcCCc----cCCCCeEEEecCccCC--HHHHHHHHHHHhc-CeEEEEecCCC---CCCCCCCC-----CCCC
Confidence 6777876665432 1125889999996654 5567777777865 59999999998 56554211 1234
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchh---hhhc------CCCCCcch-
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA---LMVG------TTDIPDWC- 721 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~---~~~~------~~~~~~~~- 721 (789)
++++.+.+..+++. +..+++.|+|||+||.+++.+|.++|++++++|+.++..... .+.. ........
T Consensus 75 ~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (266)
T 2xua_A 75 IEQLTGDVLGLMDT--LKIARANFCGLSMGGLTGVALAARHADRIERVALCNTAARIGSPEVWVPRAVKARTEGMHALAD 152 (266)
T ss_dssp HHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCSCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCCCceEEEEECHHHHHHHHHHHhChhhhheeEEecCCCCCCchHHHHHHHHHHHhcChHHHHH
Confidence 56666666666554 345689999999999999999999999999999998754210 0000 00000000
Q ss_pred -h-hhhccCcc-----------ccccCCCCChhh----HHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHH
Q 003886 722 -Y-VESYGSKG-----------KDSFTESPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYH 784 (789)
Q Consensus 722 -~-~~~~~~~~-----------~~~~~~~~~~~~----~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~ 784 (789)
. ...+.... .+.+... .... ...+...+....+.++++|+|+++|++|..+|++.+.++.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~ 231 (266)
T 2xua_A 153 AVLPRWFTADYMEREPVVLAMIRDVFVHT-DKEGYASNCEAIDAADLRPEAPGIKVPALVISGTHDLAATPAQGRELAQA 231 (266)
T ss_dssp HHHHHHSCHHHHHHCHHHHHHHHHHHHTS-CHHHHHHHHHHHHHCCCGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHH
T ss_pred HHHHHHcCcccccCCHHHHHHHHHHHhhC-CHHHHHHHHHHHhccCchhhhccCCCCEEEEEcCCCCcCCHHHHHHHHHh
Confidence 0 00000000 0000000 0000 011122334445778999999999999999999999999998
Q ss_pred CCCC
Q 003886 785 IPFS 788 (789)
Q Consensus 785 l~~~ 788 (789)
+++.
T Consensus 232 ~~~~ 235 (266)
T 2xua_A 232 IAGA 235 (266)
T ss_dssp STTC
T ss_pred CCCC
Confidence 8753
|
| >3v48_A Aminohydrolase, putative aminoacrylate hydrolase RUTD; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.10A {Escherichia coli SE11} | Back alignment and structure |
|---|
Probab=99.60 E-value=6e-15 Score=152.15 Aligned_cols=187 Identities=16% Similarity=0.244 Sum_probs=118.7
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (789)
...|+||++||.+.+ ...|......|++ +|.|+++|+|| +|.+... ......++++.+.+..+++. .+
T Consensus 13 ~~~~~vvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G---~G~S~~~----~~~~~~~~~~a~dl~~~l~~--l~ 80 (268)
T 3v48_A 13 ADAPVVVLISGLGGS--GSYWLPQLAVLEQ-EYQVVCYDQRG---TGNNPDT----LAEDYSIAQMAAELHQALVA--AG 80 (268)
T ss_dssp TTCCEEEEECCTTCC--GGGGHHHHHHHHT-TSEEEECCCTT---BTTBCCC----CCTTCCHHHHHHHHHHHHHH--TT
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHHHhh-cCeEEEECCCC---CCCCCCC----ccccCCHHHHHHHHHHHHHH--cC
Confidence 346889999997664 5678777777754 69999999998 5655321 11234577777777777765 34
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhc-----------CCCCCcchhh--------hhccCc-
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-----------TTDIPDWCYV--------ESYGSK- 729 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~-----------~~~~~~~~~~--------~~~~~~- 729 (789)
.+++.|+|||+||.+++.++.++|++++++|+.++......... ......+... ..+...
T Consensus 81 ~~~~~lvGhS~GG~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (268)
T 3v48_A 81 IEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARA 160 (268)
T ss_dssp CCSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTTH
T ss_pred CCCeEEEEecHHHHHHHHHHHhChhhceEEEEeccccccchhhhHHHHHHHHHHhccchhhhhhhhhhhcCchhhhhccc
Confidence 57899999999999999999999999999999987543210000 0000000000 000000
Q ss_pred ------cccccCCCCChh----hHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 730 ------GKDSFTESPSVE----DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 730 ------~~~~~~~~~~~~----~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
............ ....+...+....+.++++|+|+|+|++|..+|++.+.++.+.++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~l~~~~p~~ 229 (268)
T 3v48_A 161 PRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDS 229 (268)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCBCTTTGGGCCSCEEEEEETTCSSSCTHHHHHHHHHCSSE
T ss_pred ccchhhHHHHHhhcCchhHHHHHHHHHhccchhhhhhcCCCCeEEEEeCCCcccCHHHHHHHHHhCCcC
Confidence 000000000001 11112233334457889999999999999999999999999988753
|
| >2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo sapiens} PDB: 2oci_A* 2ock_A 2ocl_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=148.50 Aligned_cols=196 Identities=17% Similarity=0.206 Sum_probs=117.0
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~ 651 (789)
+|..++....-+ ..|.||++||.+++ ....|......|+++||.|+++|+|| +|.+... ...+....
T Consensus 10 ~g~~l~~~~~g~-------~~~~vvllHG~~~~-~~~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~~--~~~~~~~~ 76 (254)
T 2ocg_A 10 NGVQLHYQQTGE-------GDHAVLLLPGMLGS-GETDFGPQLKNLNKKLFTVVAWDPRG---YGHSRPP--DRDFPADF 76 (254)
T ss_dssp TTEEEEEEEEEC-------CSEEEEEECCTTCC-HHHHCHHHHHHSCTTTEEEEEECCTT---STTCCSS--CCCCCTTH
T ss_pred CCEEEEEEEecC-------CCCeEEEECCCCCC-CccchHHHHHHHhhCCCeEEEECCCC---CCCCCCC--CCCCChHH
Confidence 566666443321 23679999996653 13457777788888999999999998 5554321 11111111
Q ss_pred H-HHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh-----hhcCCCCCcchh--h
Q 003886 652 V-NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL-----MVGTTDIPDWCY--V 723 (789)
Q Consensus 652 ~-~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~-----~~~~~~~~~~~~--~ 723 (789)
+ +++.++++++.+. +.+++.|+|||+||.+++.+|.++|++++++|+.++...... +........|.. .
T Consensus 77 ~~~~~~~~~~~l~~l---~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (254)
T 2ocg_A 77 FERDAKDAVDLMKAL---KFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERTR 153 (254)
T ss_dssp HHHHHHHHHHHHHHT---TCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSBCCHHHHHHHHTTSCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCCEEEEEECHhHHHHHHHHHHChHHhhheeEeccccccChhhHHHHHHHHHHHHHHHHhH
Confidence 2 2333444444333 457899999999999999999999999999999987532110 000111111100 0
Q ss_pred h----hccCccccccCCCCChhh-HHHHHhc-------CccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 724 E----SYGSKGKDSFTESPSVED-LTRFHSK-------SPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 724 ~----~~~~~~~~~~~~~~~~~~-~~~~~~~-------sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
. .++...... .+.. ...+... .....+.++++|+|+++|++|..+|++.+..+++.+++.
T Consensus 154 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~ 225 (254)
T 2ocg_A 154 KPLEALYGYDYFAR-----TCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVKGS 225 (254)
T ss_dssp HHHHHHHCHHHHHH-----HHHHHHHHHHGGGGSGGGBSSGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHSTTC
T ss_pred HHHHHHhcchhhHH-----HHHHHHHHHHHHHhccCCchhhhhhhcccCCEEEEecCCCccCCHHHHHHHHHhCCCC
Confidence 0 000000000 0000 0011110 112346789999999999999999999999999988753
|
| >3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured bacterium} PDB: 3dnm_A | Back alignment and structure |
|---|
Probab=99.59 E-value=7.3e-15 Score=155.96 Aligned_cols=183 Identities=18% Similarity=0.216 Sum_probs=119.8
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CchhhHHHHHHHHH-CCcEEEEEcCCCCCCCCchhhccCCCCCCc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~-~~~~~~~~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~ 649 (789)
+|.++ +.|.+ .....|+||++|||++.. ....|......|+. .||.|+++|||++++.. ..
T Consensus 66 ~g~~~----~~p~~--~~~~~~~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~v~~~dyr~~~~~~-----------~~ 128 (322)
T 3k6k_A 66 GGVPC----IRQAT--DGAGAAHILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYRLAPENP-----------FP 128 (322)
T ss_dssp TTEEE----EEEEC--TTCCSCEEEEECCSTTTSCCHHHHHHHHHHHHHHHTCEEEEECCCCTTTSC-----------TT
T ss_pred CCEeE----EecCC--CCCCCeEEEEEcCCcccCCChHHHHHHHHHHHHhcCCEEEEeeCCCCCCCC-----------Cc
Confidence 56555 45652 233445599999987533 33456666777775 49999999999865421 23
Q ss_pred ccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCc----eeEEEEeCCccchhhhhcCCCCCcchhhhh
Q 003886 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~----~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~ 725 (789)
..++|+.++++|+.++ .+|.++|+|+|+|+||.+++.++.+++++ ++++|+.+|++++.... ..+...
T Consensus 129 ~~~~d~~~a~~~l~~~-~~~~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~~~~~-------~~~~~~ 200 (322)
T 3k6k_A 129 AAVDDCVAAYRALLKT-AGSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLSPFVDLTLSR-------WSNSNL 200 (322)
T ss_dssp HHHHHHHHHHHHHHHH-HSSGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCTTCCS-------HHHHHT
T ss_pred hHHHHHHHHHHHHHHc-CCCCccEEEEecCccHHHHHHHHHHHHhcCCCCceEEEEecCCcCcccCc-------cchhhc
Confidence 3578999999999998 47899999999999999999999887665 99999999998753210 000000
Q ss_pred ccCccccccCCCCChhhH----HHH--------HhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 726 YGSKGKDSFTESPSVEDL----TRF--------HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~----~~~--------~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
... ... ...... ..| ...+|+....+..+|+||+||++|.. ..++.+++++|+.
T Consensus 201 ~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~G~~D~~--~~~~~~~~~~l~~ 266 (322)
T 3k6k_A 201 ADR----DFL--AEPDTLGEMSELYVGGEDRKNPLISPVYADLSGLPEMLIHVGSEEAL--LSDSTTLAERAGA 266 (322)
T ss_dssp GGG----CSS--SCHHHHHHHHHHHHTTSCTTCTTTCGGGSCCTTCCCEEEEEESSCTT--HHHHHHHHHHHHH
T ss_pred cCC----CCc--CCHHHHHHHHHHhcCCCCCCCCcCCcccccccCCCcEEEEECCcCcc--HHHHHHHHHHHHH
Confidence 000 000 000000 111 12344444334447999999999987 4688888887753
|
| >4dnp_A DAD2; alpha/beta hydrolase, hydrolase; 2.15A {Petunia hybrida} PDB: 4dnq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=5.8e-15 Score=151.23 Aligned_cols=188 Identities=13% Similarity=0.084 Sum_probs=117.1
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
..|+||++||.+.+ ...|......|++ ||.|+++|+|| +|.+...... .....+++++.+.+..+++. ++.
T Consensus 19 ~~p~vv~~HG~~~~--~~~~~~~~~~l~~-g~~v~~~D~~G---~G~S~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~ 89 (269)
T 4dnp_A 19 GERVLVLAHGFGTD--QSAWNRILPFFLR-DYRVVLYDLVC---AGSVNPDFFD-FRRYTTLDPYVDDLLHILDA--LGI 89 (269)
T ss_dssp CSSEEEEECCTTCC--GGGGTTTGGGGTT-TCEEEEECCTT---STTSCGGGCC-TTTCSSSHHHHHHHHHHHHH--TTC
T ss_pred CCCEEEEEeCCCCc--HHHHHHHHHHHhC-CcEEEEEcCCC---CCCCCCCCCC-ccccCcHHHHHHHHHHHHHh--cCC
Confidence 45899999997764 4566666677877 99999999998 5554321111 11122455666666666655 456
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCC-CCc--ch-hhhhccC-------ccccccCCCCC
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD-IPD--WC-YVESYGS-------KGKDSFTESPS 739 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~-~~~--~~-~~~~~~~-------~~~~~~~~~~~ 739 (789)
+++.|+|||+||++++.++.++|++++++|+.+|............ ... .. ....... ...........
T Consensus 90 ~~~~l~GhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (269)
T 4dnp_A 90 DCCAYVGHSVSAMIGILASIRRPELFSKLILIGASPRFLNDEDYHGGFEQGEIEKVFSAMEANYEAWVNGFAPLAVGADV 169 (269)
T ss_dssp CSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCCBCBTTBCCSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCSSC
T ss_pred CeEEEEccCHHHHHHHHHHHhCcHhhceeEEeCCCCCCCChHHhccccchHHHHHHHHhccccHHHHHHHhhhhhccCCC
Confidence 7999999999999999999999999999999998643211000000 000 00 0000000 00000000000
Q ss_pred hh-------------------hHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 740 VE-------------------DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 740 ~~-------------------~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.+ ....+...+....+.++++|+|+++|++|..+|++.+..+++.+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~ 236 (269)
T 4dnp_A 170 PAAVREFSRTLFNMRPDITLFVSRTVFNSDMRGVLGLVKVPCHIFQTARDHSVPASVATYLKNHLGG 236 (269)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHTCCCGGGGGGCCSCEEEEEEESBTTBCHHHHHHHHHHSSS
T ss_pred hhHHHHHHHHHHccCcchhhhHhhhhcchhhHhhhccccCCEEEEecCCCcccCHHHHHHHHHhCCC
Confidence 00 1111223344556788999999999999999999999999998875
|
| >1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} PDB: 4dgq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=149.79 Aligned_cols=119 Identities=20% Similarity=0.241 Sum_probs=86.3
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
...+|..++...+-|. ..|.||++||.+.+ ...|......|+++||.|+++|+|| +|.+.... .
T Consensus 5 ~~~~g~~l~y~~~g~~------~~~~vvllHG~~~~--~~~w~~~~~~L~~~g~~vi~~D~~G---~G~S~~~~-----~ 68 (276)
T 1zoi_A 5 TTKDGVQIFYKDWGPR------DAPVIHFHHGWPLS--ADDWDAQLLFFLAHGYRVVAHDRRG---HGRSSQVW-----D 68 (276)
T ss_dssp ECTTSCEEEEEEESCT------TSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCCS-----S
T ss_pred ECCCCcEEEEEecCCC------CCCeEEEECCCCcc--hhHHHHHHHHHHhCCCEEEEecCCC---CCCCCCCC-----C
Confidence 4457777776555432 24789999997664 5678888889999999999999998 55553211 1
Q ss_pred cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC-CCceeEEEEeCCc
Q 003886 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPL 705 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~-p~~~~a~v~~~pv 705 (789)
...++++.+.+..+++. ++.+++.|+|||+||.+++.++.++ |++++++|+.++.
T Consensus 69 ~~~~~~~~~d~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~ 124 (276)
T 1zoi_A 69 GHDMDHYADDVAAVVAH--LGIQGAVHVGHSTGGGEVVRYMARHPEDKVAKAVLIAAV 124 (276)
T ss_dssp CCSHHHHHHHHHHHHHH--HTCTTCEEEEETHHHHHHHHHHHHCTTSCCCCEEEESCC
T ss_pred CCCHHHHHHHHHHHHHH--hCCCceEEEEECccHHHHHHHHHHhCHHheeeeEEecCC
Confidence 23455555545444443 3456899999999999999977776 9999999999864
|
| >1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.14 PDB: 1aur_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.4e-15 Score=146.81 Aligned_cols=153 Identities=14% Similarity=0.105 Sum_probs=109.9
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHH--CCcEEEEEcCCCC-----C-----------CCCchhhccCCCCCCc
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS--VGYSLLIVNYRGS-----L-----------GFGEEALQSLPGKVGS 649 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~--~Gy~V~~~d~rGs-----~-----------G~G~~~~~~~~~~~~~ 649 (789)
..++.|+||++||.+.+ ...|......|++ +||.|+++|++|. . |+|.+. ....
T Consensus 10 ~~~~~~~vv~~HG~~~~--~~~~~~~~~~l~~~~~g~~v~~~d~p~~~~~~~~g~~~~~w~d~~g~g~~~------~~~~ 81 (218)
T 1auo_A 10 AKPADACVIWLHGLGAD--RYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPAR------SISL 81 (218)
T ss_dssp SSCCSEEEEEECCTTCC--TTTTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSC------EECH
T ss_pred CCCCCcEEEEEecCCCC--hhhHHHHHHHHhhcCCceEEEeCCCCCccccCCCCCcccceecCcCCCccc------ccch
Confidence 45678999999997764 4567777888988 9999999997641 1 111110 0111
Q ss_pred cc----HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHH-hCCCceeEEEEeCCccchhhhhcCCCCCcchhhh
Q 003886 650 QD----VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 724 (789)
Q Consensus 650 ~~----~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~-~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~ 724 (789)
.. .+++.+.++++.+ ..++.++++++|||+||++++.++. ++|++++++|+.+|..... ..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~v~~~~~~~~~------~~~------ 148 (218)
T 1auo_A 82 EELEVSAKMVTDLIEAQKR-TGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTF------GDE------ 148 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTC------CTT------
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCCcccEEEEEECHHHHHHHHHHHhcCCCCccEEEEECCCCCCc------hhh------
Confidence 12 3444445555544 2478889999999999999999999 9999999999999976430 000
Q ss_pred hccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 725 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
. . ....++++|+|++||++|..||++++.++++.+++
T Consensus 149 ---~----------~-------------~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~l~~ 185 (218)
T 1auo_A 149 ---L----------E-------------LSASQQRIPALCLHGQYDDVVQNAMGRSAFEHLKS 185 (218)
T ss_dssp ---C----------C-------------CCHHHHTCCEEEEEETTCSSSCHHHHHHHHHHHHT
T ss_pred ---h----------h-------------hhhcccCCCEEEEEeCCCceecHHHHHHHHHHHHh
Confidence 0 0 01135678999999999999999999999998864
|
| >1q0r_A RDMC, aclacinomycin methylesterase; anthracycline, hydrolase, polyketide, tailoring enzyme, structural proteomics in europe, spine; HET: AKT 1PE; 1.45A {Streptomyces purpurascens} SCOP: c.69.1.28 PDB: 1q0z_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=150.45 Aligned_cols=121 Identities=15% Similarity=0.148 Sum_probs=87.2
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHH-HHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCc
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~-~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~ 649 (789)
.+|..++...+-+. ..|.||++||.+.+ ...|.... ..|+++||.|+++|+|| +|.+.... +. ...
T Consensus 8 ~~g~~l~y~~~G~~------~~~~vvllHG~~~~--~~~w~~~~~~~L~~~G~~vi~~D~rG---~G~S~~~~-~~-~~~ 74 (298)
T 1q0r_A 8 SGDVELWSDDFGDP------ADPALLLVMGGNLS--ALGWPDEFARRLADGGLHVIRYDHRD---TGRSTTRD-FA-AHP 74 (298)
T ss_dssp ETTEEEEEEEESCT------TSCEEEEECCTTCC--GGGSCHHHHHHHHTTTCEEEEECCTT---STTSCCCC-TT-TSC
T ss_pred cCCeEEEEEeccCC------CCCeEEEEcCCCCC--ccchHHHHHHHHHhCCCEEEeeCCCC---CCCCCCCC-CC-cCC
Confidence 36777776555332 34789999997764 45666544 78999999999999998 55543200 01 112
Q ss_pred ccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
..++++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.++..
T Consensus 75 ~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 129 (298)
T 1q0r_A 75 YGFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGG 129 (298)
T ss_dssp CCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred cCHHHHHHHHHHHHHH--hCCCceEEEEeCcHHHHHHHHHHhCchhhheeEEecccC
Confidence 3456666666655554 456789999999999999999999999999999988754
|
| >3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT peroxidase, oxidoreductase; 1.74A {Bacillus anthracis str} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-14 Score=149.38 Aligned_cols=117 Identities=20% Similarity=0.268 Sum_probs=83.1
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
.+.+|..++.... + ..|.||++||.+.+ ...|......|+++||.|+++|+|| +|.+... ..
T Consensus 12 ~~~~g~~l~y~~~-------G-~g~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G---~G~S~~~-----~~ 73 (281)
T 3fob_A 12 ENQAPIEIYYEDH-------G-TGKPVVLIHGWPLS--GRSWEYQVPALVEAGYRVITYDRRG---FGKSSQP-----WE 73 (281)
T ss_dssp ETTEEEEEEEEEE-------S-SSEEEEEECCTTCC--GGGGTTTHHHHHHTTEEEEEECCTT---STTSCCC-----SS
T ss_pred CCCCceEEEEEEC-------C-CCCeEEEECCCCCc--HHHHHHHHHHHHhCCCEEEEeCCCC---CCCCCCC-----cc
Confidence 3456666653322 1 23668899998764 5567777888999999999999998 5655321 12
Q ss_pred cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHh-CCCceeEEEEeCCc
Q 003886 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPL 705 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~-~p~~~~a~v~~~pv 705 (789)
...++++.+.+..+++. ++.+++.|+|||+||.+++.+++. +|++++++|+.++.
T Consensus 74 ~~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~GG~i~~~~~a~~~p~~v~~lvl~~~~ 129 (281)
T 3fob_A 74 GYEYDTFTSDLHQLLEQ--LELQNVTLVGFSMGGGEVARYISTYGTDRIEKVVFAGAV 129 (281)
T ss_dssp CCSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred ccCHHHHHHHHHHHHHH--cCCCcEEEEEECccHHHHHHHHHHccccceeEEEEecCC
Confidence 23456666666666665 456789999999999877766554 58999999998865
|
| >3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure initiative, PSI-2, structural midwest center for structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.59 E-value=7e-15 Score=151.26 Aligned_cols=186 Identities=15% Similarity=0.203 Sum_probs=118.2
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
+.|+||++||++.+ ...|......|++ ||.|+++|+|| +|.+... .......++++.+.+..+++. ++.
T Consensus 22 ~~~~vv~~HG~~~~--~~~~~~~~~~L~~-~~~vi~~d~~G---~G~s~~~---~~~~~~~~~~~~~~~~~~~~~--l~~ 90 (278)
T 3oos_A 22 EGPPLCVTHLYSEY--NDNGNTFANPFTD-HYSVYLVNLKG---CGNSDSA---KNDSEYSMTETIKDLEAIREA--LYI 90 (278)
T ss_dssp SSSEEEECCSSEEC--CTTCCTTTGGGGG-TSEEEEECCTT---STTSCCC---SSGGGGSHHHHHHHHHHHHHH--TTC
T ss_pred CCCeEEEEcCCCcc--hHHHHHHHHHhhc-CceEEEEcCCC---CCCCCCC---CCcccCcHHHHHHHHHHHHHH--hCC
Confidence 35789999997764 3345555667777 99999999998 4544321 112234567777777777776 456
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCC-----Ccchh----hhhccC-------------
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDI-----PDWCY----VESYGS------------- 728 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~-----~~~~~----~~~~~~------------- 728 (789)
+++.|+|||+||.+++.++.++|++++++|+.+|............. ..... ...+..
T Consensus 91 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (278)
T 3oos_A 91 NKWGFAGHSAGGMLALVYATEAQESLTKIIVGGAAASKEYASHKDSIYCSKNVKFNRIVSIMNALNDDSTVQEERKALSR 170 (278)
T ss_dssp SCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBGGGGGSTTSTTSTTSTTHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred CeEEEEeecccHHHHHHHHHhCchhhCeEEEecCccccccccccchhhhhhchhHHHHHHHHHhhcccccCchHHHHHHH
Confidence 79999999999999999999999999999999998762111100000 00000 000000
Q ss_pred ----------ccccccCCCC-----ChhhHHHHH-----hcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 729 ----------KGKDSFTESP-----SVEDLTRFH-----SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 729 ----------~~~~~~~~~~-----~~~~~~~~~-----~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.....+...+ .......+. ..+....+.++++|+|+++|++|..+|++.+.++++.+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~ 249 (278)
T 3oos_A 171 EWALMSFYSEEKLEEALKLPNSGKTVGNRLNYFRQVEYKDYDVRQKLKFVKIPSFIYCGKHDVQCPYIFSCEIANLIPN 249 (278)
T ss_dssp HHHHHHCSCHHHHHHHTTSCCCCEECHHHHHHHHHTTGGGCBCHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHHSTT
T ss_pred HHhhcccCCcHHHHHHhhccccchhHHHHHHHhhhcccccccHHHHHhCCCCCEEEEEeccCCCCCHHHHHHHHhhCCC
Confidence 0000000000 001112222 2233345788999999999999999999999999998864
|
| >3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=147.13 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=83.5
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (789)
....|+||++||.+.+ ...|......|+++||.|+++|+|| +|.+.... .....+++..+.+..+++.- -
T Consensus 9 ~~~~~~vvllHG~~~~--~~~~~~~~~~l~~~g~~v~~~D~~G---~G~S~~~~----~~~~~~~~~~~~~~~~l~~l-~ 78 (267)
T 3sty_A 9 PFVKKHFVLVHAAFHG--AWCWYKIVALMRSSGHNVTALDLGA---SGINPKQA----LQIPNFSDYLSPLMEFMASL-P 78 (267)
T ss_dssp -CCCCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTCSCCG----GGCCSHHHHHHHHHHHHHTS-C
T ss_pred CCCCCeEEEECCCCCC--cchHHHHHHHHHhcCCeEEEecccc---CCCCCCcC----CccCCHHHHHHHHHHHHHhc-C
Confidence 3567899999997764 5678888889999999999999998 55543221 11234666666666666652 1
Q ss_pred CCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
+.+++.|+|||+||.+++.++.++|++++++|+.++..
T Consensus 79 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 116 (267)
T 3sty_A 79 ANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLM 116 (267)
T ss_dssp TTSCEEEEEETTHHHHHHHHHHHSGGGEEEEEEESCCC
T ss_pred CCCCEEEEEEcHHHHHHHHHHHhChhhcceEEEecCCC
Confidence 46899999999999999999999999999999998854
|
| >3u1t_A DMMA haloalkane dehalogenase; alpha/beta-hydrolase, hydrolase; 2.20A {Unidentified} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=151.96 Aligned_cols=116 Identities=18% Similarity=0.268 Sum_probs=87.4
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~ 651 (789)
+|..++....- +.|+||++||.+.+ ...|......|.++||.|+++|+|| +|.+... .....
T Consensus 17 ~g~~l~~~~~g--------~~~~vv~~HG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G---~G~S~~~-----~~~~~ 78 (309)
T 3u1t_A 17 EGATIAYVDEG--------SGQPVLFLHGNPTS--SYLWRNIIPYVVAAGYRAVAPDLIG---MGDSAKP-----DIEYR 78 (309)
T ss_dssp TTEEEEEEEEE--------CSSEEEEECCTTCC--GGGGTTTHHHHHHTTCEEEEECCTT---STTSCCC-----SSCCC
T ss_pred CCeEEEEEEcC--------CCCEEEEECCCcch--hhhHHHHHHHHHhCCCEEEEEccCC---CCCCCCC-----CcccC
Confidence 67777654432 25789999997764 5567777778888999999999998 5554321 11345
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
++++.+.+..+++. ++.+++.|+|||+||++++.++.++|++++++|+.+|...
T Consensus 79 ~~~~~~~~~~~~~~--~~~~~~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~~ 132 (309)
T 3u1t_A 79 LQDHVAYMDGFIDA--LGLDDMVLVIHDWGSVIGMRHARLNPDRVAAVAFMEALVP 132 (309)
T ss_dssp HHHHHHHHHHHHHH--HTCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEESCT
T ss_pred HHHHHHHHHHHHHH--cCCCceEEEEeCcHHHHHHHHHHhChHhheEEEEeccCCC
Confidence 66777766666665 3457899999999999999999999999999999987543
|
| >1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A {Streptomyces aureofaciens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.59 E-value=6e-14 Score=144.75 Aligned_cols=117 Identities=17% Similarity=0.216 Sum_probs=84.7
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
+..+|..++...+- +.|.||++||.+.+ ...|......|+++||.|+++|+|| +|.+... ..
T Consensus 4 ~~~~g~~l~y~~~g--------~g~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G---~G~S~~~-----~~ 65 (274)
T 1a8q_A 4 TTRDGVEIFYKDWG--------QGRPVVFIHGWPLN--GDAWQDQLKAVVDAGYRGIAHDRRG---HGHSTPV-----WD 65 (274)
T ss_dssp ECTTSCEEEEEEEC--------SSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC-----SS
T ss_pred EccCCCEEEEEecC--------CCceEEEECCCcch--HHHHHHHHHHHHhCCCeEEEEcCCC---CCCCCCC-----CC
Confidence 44567777543331 24679999997664 5678778889999999999999998 5554321 11
Q ss_pred cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC-CCceeEEEEeCCc
Q 003886 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPL 705 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~-p~~~~a~v~~~pv 705 (789)
...++++.+.+..+++. ++.+++.|+||||||.+++.++.++ |++++++|+.++.
T Consensus 66 ~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~ 121 (274)
T 1a8q_A 66 GYDFDTFADDLNDLLTD--LDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAI 121 (274)
T ss_dssp CCSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred CCcHHHHHHHHHHHHHH--cCCCceEEEEeCccHHHHHHHHHHhhhHheeeeeEecCC
Confidence 23455555555555554 4557899999999999999877665 8999999999864
|
| >4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.15A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=155.13 Aligned_cols=140 Identities=18% Similarity=0.124 Sum_probs=90.9
Q ss_pred ecCCC--eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc-hh-----hHHHHHHHH-HCCcEEEEEcCCCCCCCCchh
Q 003886 569 TKGAQ--KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SS-----YSKSLAFLS-SVGYSLLIVNYRGSLGFGEEA 639 (789)
Q Consensus 569 ~~~~g--~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~-----~~~~~~~la-~~Gy~V~~~d~rGs~G~G~~~ 639 (789)
++.+| ..+.|+++.|.+. .++.|+|++.||....... .+ .......|+ ++||+|+++||||.++.+...
T Consensus 51 ~d~~G~~~~~~g~l~~P~~~--~~~~PvV~~~HG~~~~~~~~ps~~~~~~~~~~~~lal~~Gy~Vv~~D~rG~G~s~~~~ 128 (377)
T 4ezi_A 51 QSPDGNLTIASGLVAMPIHP--VGQVGIISYQHGTRFERNDVPSRNNEKNYIYLAAYGNSAGYMTVMPDYLGLGDNELTL 128 (377)
T ss_dssp ECTTSCEEEEEEEEEEESSC--SSCEEEEEEECCCCCSTTCSGGGCCGGGHHHHHHHTTTTCCEEEEECCTTSTTCCCSS
T ss_pred ECCCCCEEEEEEEEEECCCC--CCCCcEEEEeCCCcCCcccCCCcCcccchHHHHHHHHhCCcEEEEeCCCCCCCCCCCC
Confidence 34445 5688999999852 4679999999997743211 11 112445688 999999999999965543311
Q ss_pred hccCCCCCCcccHHHHHHHHHHHHHc-CCCCCccEEEEEcCccHHHHHHHHHhCC----C-ceeEEEEeCCccchhh
Q 003886 640 LQSLPGKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAP----D-KFVAAAARNPLCNLAL 710 (789)
Q Consensus 640 ~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~~~~~p----~-~~~a~v~~~pv~~~~~ 710 (789)
.....+.....++.|...++..+.+. +..+.+||+++|||+||+++++++..+| + .++++++.++..|+..
T Consensus 129 ~~~~~~~~~~~~~~D~~~a~~~~~~~~g~~~~~~v~l~G~S~GG~~al~~A~~~p~~~~~l~l~g~~~~~~p~dl~~ 205 (377)
T 4ezi_A 129 HPYVQAETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEGGFSTIVMFEMLAKEYPDLPVSAVAPGSAPYGWEE 205 (377)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEETHHHHHHHHHHHHHHHHCTTSCCCEEEEESCCCCHHH
T ss_pred cccccchhHHHHHHHHHHHHHHHhhccCCCCCCceEEEEECHHHHHHHHHHHHhhhhCCCCceEEEEecCcccCHHH
Confidence 11100000111233444444444333 4346799999999999999999988654 3 6899999999888754
|
| >1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl esterase, ferulic acid esterase, FAE_XYNZ, XYNZ, structural genomics; 1.75A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1jt2_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.1e-15 Score=151.56 Aligned_cols=172 Identities=13% Similarity=-0.006 Sum_probs=115.3
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch-----hhHHHHHHHHHC----CcEEEEEcCCCCCCCCchhhc
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----SYSKSLAFLSSV----GYSLLIVNYRGSLGFGEEALQ 641 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-----~~~~~~~~la~~----Gy~V~~~d~rGs~G~G~~~~~ 641 (789)
.+|..+.+.++.|+++...+++|+||++||+++..... .+......|+++ ||.|+.+|+++.+. + .
T Consensus 41 ~~~~~~~~~v~~P~~~~~~~~~P~vv~lHG~g~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~vv~~d~~~~~~-~--~-- 115 (268)
T 1jjf_A 41 ATNSTRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNTNAAGP-G--I-- 115 (268)
T ss_dssp TTTEEEEEEEEECTTCCTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECCCCCCT-T--C--
T ss_pred ccCCceEEEEEeCCCCCCCCCccEEEEECCCCCCcchhhhccccHHHHHHHHHHcCCCCCEEEEEeCCCCCCc-c--c--
Confidence 35788999999999876678899999999987643211 122345677776 59999999997421 1 0
Q ss_pred cCCCCCCcccHHH-HHHHHHHHHHcCCC--CCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCC
Q 003886 642 SLPGKVGSQDVND-VLTAIDHVIDMGLA--NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIP 718 (789)
Q Consensus 642 ~~~~~~~~~~~~D-~~~~i~~l~~~~~~--d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~ 718 (789)
...+. ...++ +.++++++.++..+ |.+|++|+|||+||++++.++.++|++|+++++.+|..++..
T Consensus 116 --~~~~~-~~~~~~~~~~~~~l~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~v~~s~~~~~~~-------- 184 (268)
T 1jjf_A 116 --ADGYE-NFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPNTYP-------- 184 (268)
T ss_dssp --SCHHH-HHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCCTTSCC--------
T ss_pred --cccHH-HHHHHHHHHHHHHHHhhcCCCCCCCceEEEEECHHHHHHHHHHHhCchhhhheEEeCCCCCCCc--------
Confidence 00110 11233 44566777665434 889999999999999999999999999999999999764311
Q ss_pred cchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCC-CEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 719 DWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKT-PTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~-P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
+ ...+.. .. .. ...+. |+|++||++|..||. +.++++.|+
T Consensus 185 -~--~~~~~~---------~~-~~-------------~~~~~pp~li~~G~~D~~v~~--~~~~~~~l~ 225 (268)
T 1jjf_A 185 -N--ERLFPD---------GG-KA-------------AREKLKLLFIACGTNDSLIGF--GQRVHEYCV 225 (268)
T ss_dssp -H--HHHCTT---------TT-HH-------------HHHHCSEEEEEEETTCTTHHH--HHHHHHHHH
T ss_pred -h--hhhcCc---------ch-hh-------------hhhcCceEEEEecCCCCCccH--HHHHHHHHH
Confidence 0 000100 00 00 01223 499999999999985 566766664
|
| >1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-14 Score=147.49 Aligned_cols=119 Identities=18% Similarity=0.265 Sum_probs=86.0
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
+..+|..++...+-|. +.|.||++||.+.+ ...|......|+++||.|+++|+|| +|.+.... .
T Consensus 4 ~~~~g~~l~y~~~g~~------~~~~vvllHG~~~~--~~~w~~~~~~l~~~g~~vi~~D~~G---~G~S~~~~-----~ 67 (275)
T 1a88_A 4 TTSDGTNIFYKDWGPR------DGLPVVFHHGWPLS--ADDWDNQMLFFLSHGYRVIAHDRRG---HGRSDQPS-----T 67 (275)
T ss_dssp ECTTSCEEEEEEESCT------TSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCCS-----S
T ss_pred EccCCCEEEEEEcCCC------CCceEEEECCCCCc--hhhHHHHHHHHHHCCceEEEEcCCc---CCCCCCCC-----C
Confidence 4457777776555432 34789999997664 5578778889999999999999998 55543211 1
Q ss_pred cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC-CCceeEEEEeCCc
Q 003886 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPL 705 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~-p~~~~a~v~~~pv 705 (789)
...++++.+.+..+++. ++.+++.|+|||+||++++.++.++ |++++++|+.++.
T Consensus 68 ~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~ 123 (275)
T 1a88_A 68 GHDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAV 123 (275)
T ss_dssp CCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCC
T ss_pred CCCHHHHHHHHHHHHHH--cCCCceEEEEeccchHHHHHHHHHhCchheEEEEEecCC
Confidence 23455555555555444 3456899999999999999877776 9999999999864
|
| >1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} SCOP: c.69.1.12 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-14 Score=147.28 Aligned_cols=118 Identities=19% Similarity=0.295 Sum_probs=85.2
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
++..+|..++....- ..|.||++||.+.+ ...|......|+++||.|+++|+|| +|.+... .
T Consensus 3 ~~~~~g~~l~y~~~g--------~~~~vvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G---~G~S~~~-----~ 64 (273)
T 1a8s_A 3 FTTRDGTQIYYKDWG--------SGQPIVFSHGWPLN--ADSWESQMIFLAAQGYRVIAHDRRG---HGRSSQP-----W 64 (273)
T ss_dssp EECTTSCEEEEEEES--------CSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC-----S
T ss_pred EecCCCcEEEEEEcC--------CCCEEEEECCCCCc--HHHHhhHHhhHhhCCcEEEEECCCC---CCCCCCC-----C
Confidence 344577777543321 24679999997664 5678778889999999999999998 5554321 1
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC-CCceeEEEEeCCc
Q 003886 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPL 705 (789)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~-p~~~~a~v~~~pv 705 (789)
....++++.+.+..+++. ++.+++.|+|||+||.+++.++.++ |++++++|+.++.
T Consensus 65 ~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~ 121 (273)
T 1a8s_A 65 SGNDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAV 121 (273)
T ss_dssp SCCSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCC
T ss_pred CCCCHHHHHHHHHHHHHH--hCCCCeEEEEeChHHHHHHHHHHhcCchheeEEEEEccc
Confidence 123455555555555554 4567899999999999999877665 8999999999864
|
| >2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.58 E-value=6.5e-15 Score=150.11 Aligned_cols=149 Identities=17% Similarity=0.152 Sum_probs=109.8
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEE--cCCCCCCCCchhhccC-CCCCC----cccHHHHHHHHHHH
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIV--NYRGSLGFGEEALQSL-PGKVG----SQDVNDVLTAIDHV 662 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~--d~rGs~G~G~~~~~~~-~~~~~----~~~~~D~~~~i~~l 662 (789)
++.|+||++||++.+ ...|......|++ +|.|+++ |++|.++++ +.... .+... ...++|+.+.++++
T Consensus 60 ~~~p~vv~~HG~~~~--~~~~~~~~~~l~~-~~~v~~~~~d~~g~g~s~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (251)
T 2r8b_A 60 AGAPLFVLLHGTGGD--ENQFFDFGARLLP-QATILSPVGDVSEHGAAR--FFRRTGEGVYDMVDLERATGKMADFIKAN 134 (251)
T ss_dssp TTSCEEEEECCTTCC--HHHHHHHHHHHST-TSEEEEECCSEEETTEEE--SSCBCGGGCBCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCC--HhHHHHHHHhcCC-CceEEEecCCcCCCCCcc--cccCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 578999999997754 5566667777766 4999999 676633221 10000 01111 11256777778877
Q ss_pred HHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhh
Q 003886 663 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 742 (789)
Q Consensus 663 ~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (789)
.++. +.++++|+|||+||++++.++.++|++++++|+.+|..+...
T Consensus 135 ~~~~--~~~~i~l~G~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~-------------------------------- 180 (251)
T 2r8b_A 135 REHY--QAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP-------------------------------- 180 (251)
T ss_dssp HHHH--TCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC--------------------------------
T ss_pred Hhcc--CCCcEEEEEECHHHHHHHHHHHhCCcccCeEEEEecCCCccc--------------------------------
Confidence 7763 789999999999999999999999999999999999764210
Q ss_pred HHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 743 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 743 ~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
......+++|+|++||++|..||++++.++++.++
T Consensus 181 ---------~~~~~~~~~P~li~~g~~D~~~~~~~~~~~~~~l~ 215 (251)
T 2r8b_A 181 ---------KISPAKPTRRVLITAGERDPICPVQLTKALEESLK 215 (251)
T ss_dssp ---------CCCCCCTTCEEEEEEETTCTTSCHHHHHHHHHHHH
T ss_pred ---------cccccccCCcEEEeccCCCccCCHHHHHHHHHHHH
Confidence 01234568899999999999999999999999886
|
| >2puj_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrola; C-C bond hydrolase, hydrolase; HET: HPZ; 1.57A {Burkholderia xenovorans} PDB: 2pu7_A* 3v1m_A* 3v1l_A* 2puh_A* 3v1n_A* 3v1k_A* 2og1_A 2pu5_A 2rhw_A* 2rht_A* 2ri6_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-14 Score=148.29 Aligned_cols=186 Identities=18% Similarity=0.289 Sum_probs=113.7
Q ss_pred CcEEEEEcCCC-CCCCchhhHHHH-HHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 003886 592 DPLIVVLHGGP-HSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 592 ~P~vv~~HGg~-~~~~~~~~~~~~-~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (789)
.|.||++||.+ ++.....|.... ..|++. |.|+++|+|| +|.+.... . ....++++.+.+..+++. ++
T Consensus 33 g~~vvllHG~~~~~~~~~~w~~~~~~~L~~~-~~vi~~D~~G---~G~S~~~~---~-~~~~~~~~a~dl~~~l~~--l~ 102 (286)
T 2puj_A 33 GETVIMLHGGGPGAGGWSNYYRNVGPFVDAG-YRVILKDSPG---FNKSDAVV---M-DEQRGLVNARAVKGLMDA--LD 102 (286)
T ss_dssp SSEEEEECCCSTTCCHHHHHTTTHHHHHHTT-CEEEEECCTT---STTSCCCC---C-SSCHHHHHHHHHHHHHHH--TT
T ss_pred CCcEEEECCCCCCCCcHHHHHHHHHHHHhcc-CEEEEECCCC---CCCCCCCC---C-cCcCHHHHHHHHHHHHHH--hC
Confidence 36899999964 333344666666 777765 9999999998 66554211 1 123566666666666665 45
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCC------------CCcchhhhh----ccCc--cc
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD------------IPDWCYVES----YGSK--GK 731 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~------------~~~~~~~~~----~~~~--~~ 731 (789)
.+++.|+|||+||.+++.+|.++|++++++|+.+|............ .+.+..... +... ..
T Consensus 103 ~~~~~lvGhS~GG~va~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (286)
T 2puj_A 103 IDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSLI 182 (286)
T ss_dssp CCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGGGC
T ss_pred CCceEEEEECHHHHHHHHHHHhChHhhheEEEECccccCCCcccccchhhHHHHHHHhhCCcHHHHHHHHHHHhcCCccC
Confidence 67899999999999999999999999999999987542100000000 000000000 0000 00
Q ss_pred -----c-ccC-CCCChhhHHHHH---------hcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 732 -----D-SFT-ESPSVEDLTRFH---------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 732 -----~-~~~-~~~~~~~~~~~~---------~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
+ ++. ..........+. ..+....+.++++|+|+++|++|..+|++.+.++.+.+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~~~~~~~~ 254 (286)
T 2puj_A 183 TEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDD 254 (286)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHhhcCHHHHHHHHHHHhhhhccccchhhHHhhcCCCEEEEEECCCCccCHHHHHHHHHHCCC
Confidence 0 000 000000001111 1122345778999999999999999999999999998875
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-12 Score=140.83 Aligned_cols=245 Identities=11% Similarity=0.113 Sum_probs=156.4
Q ss_pred ecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003886 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (789)
Q Consensus 102 ~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (789)
..++|||++++++.. ....|+++++. .++........ ..+...+|||||++|++....+ ..+
T Consensus 37 ~~~s~dg~~l~~~~~--------~d~~i~v~d~~--~~~~~~~~~~~-----~~v~~~~~spdg~~l~~~~~~~---~~v 98 (391)
T 1l0q_A 37 AVISPDGTKVYVANA--------HSNDVSIIDTA--TNNVIATVPAG-----SSPQGVAVSPDGKQVYVTNMAS---STL 98 (391)
T ss_dssp EEECTTSSEEEEEEG--------GGTEEEEEETT--TTEEEEEEECS-----SSEEEEEECTTSSEEEEEETTT---TEE
T ss_pred EEECCCCCEEEEECC--------CCCeEEEEECC--CCeEEEEEECC-----CCccceEECCCCCEEEEEECCC---CEE
Confidence 345799998866432 23467777752 22222221122 3577899999999998875432 234
Q ss_pred EEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceee
Q 003886 182 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (789)
Q Consensus 182 ~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (789)
..++ ..++....+...... ..+.|+|||++|++....
T Consensus 99 ~v~d~~~~~~~~~~~~~~~~----------~~~~~s~dg~~l~~~~~~-------------------------------- 136 (391)
T 1l0q_A 99 SVIDTTSNTVAGTVKTGKSP----------LGLALSPDGKKLYVTNNG-------------------------------- 136 (391)
T ss_dssp EEEETTTTEEEEEEECSSSE----------EEEEECTTSSEEEEEETT--------------------------------
T ss_pred EEEECCCCeEEEEEeCCCCc----------ceEEECCCCCEEEEEeCC--------------------------------
Confidence 4444 455555555433333 689999999998776432
Q ss_pred CCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEE
Q 003886 261 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (789)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (789)
...|++||+.+++.... ......+..+.|+|||+. |++++. ....|+++
T Consensus 137 -----------~~~v~~~d~~~~~~~~~--~~~~~~~~~~~~~~dg~~----l~~~~~--------------~~~~v~~~ 185 (391)
T 1l0q_A 137 -----------DKTVSVINTVTKAVINT--VSVGRSPKGIAVTPDGTK----VYVANF--------------DSMSISVI 185 (391)
T ss_dssp -----------TTEEEEEETTTTEEEEE--EECCSSEEEEEECTTSSE----EEEEET--------------TTTEEEEE
T ss_pred -----------CCEEEEEECCCCcEEEE--EecCCCcceEEECCCCCE----EEEEeC--------------CCCEEEEE
Confidence 36799999999887655 333445678999999997 766542 22368999
Q ss_pred ecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcc
Q 003886 341 RVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 420 (789)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t 420 (789)
|+ .+++..............+|+|||++|+..+... ....|++||+.+++...
T Consensus 186 d~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~--------~~~~v~~~d~~~~~~~~-- 238 (391)
T 1l0q_A 186 DT-----------------VTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK--------YFNTVSMIDTGTNKITA-- 238 (391)
T ss_dssp ET-----------------TTTEEEEEEECSSEEEEEEECTTSSEEEEEEECS--------SCCEEEEEETTTTEEEE--
T ss_pred EC-----------------CCCeEEEEEecCCCccceEECCCCCEEEEEecCc--------CCCcEEEEECCCCeEEE--
Confidence 98 4555444433444567789999999988777421 12469999987654321
Q ss_pred cceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003886 421 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (789)
Q Consensus 421 ~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt 484 (789)
... .. ..+..+.|+|||+.|+++...++ .|..+|+.++++....
T Consensus 239 -----~~~---~~----------~~~~~~~~s~dg~~l~~s~~~d~--~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 239 -----RIP---VG----------PDPAGIAVTPDGKKVYVALSFXN--TVSVIDTATNTITATM 282 (391)
T ss_dssp -----EEE---CC----------SSEEEEEECTTSSEEEEEETTTT--EEEEEETTTTEEEEEE
T ss_pred -----EEe---cC----------CCccEEEEccCCCEEEEEcCCCC--EEEEEECCCCcEEEEE
Confidence 111 00 01235689999998887765454 4666788888876543
|
| >1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase); PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.5e-14 Score=146.14 Aligned_cols=201 Identities=17% Similarity=0.199 Sum_probs=117.1
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCC-CCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCc
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~-~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~ 649 (789)
.+|..++....-+ ...|+||++||.+ +......|......|++. |.|+++|+|| +|.+.... . ..
T Consensus 14 ~~g~~l~y~~~g~------~g~p~vvllHG~~~~~~~~~~~~~~~~~L~~~-~~vi~~D~~G---~G~S~~~~--~--~~ 79 (285)
T 1c4x_A 14 SGTLASHALVAGD------PQSPAVVLLHGAGPGAHAASNWRPIIPDLAEN-FFVVAPDLIG---FGQSEYPE--T--YP 79 (285)
T ss_dssp CTTSCEEEEEESC------TTSCEEEEECCCSTTCCHHHHHGGGHHHHHTT-SEEEEECCTT---STTSCCCS--S--CC
T ss_pred ECCEEEEEEecCC------CCCCEEEEEeCCCCCCcchhhHHHHHHHHhhC-cEEEEecCCC---CCCCCCCC--C--cc
Confidence 3566676543321 2347799999964 322344666666777665 9999999998 55543211 1 02
Q ss_pred ccHHHH----HHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchh--------hhhcCCCC
Q 003886 650 QDVNDV----LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA--------LMVGTTDI 717 (789)
Q Consensus 650 ~~~~D~----~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~--------~~~~~~~~ 717 (789)
..++++ .+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.+|..... .+......
T Consensus 80 ~~~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~ 157 (285)
T 1c4x_A 80 GHIMSWVGMRVEQILGLMNH--FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAFYAD 157 (285)
T ss_dssp SSHHHHHHHHHHHHHHHHHH--HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTGGGS
T ss_pred cchhhhhhhHHHHHHHHHHH--hCCCccEEEEEChHHHHHHHHHHhChHHhheEEEeccCCCCCCccchhHHHHHHHhcc
Confidence 345555 5555555554 345789999999999999999999999999999998754210 00000000
Q ss_pred CcchhhhhccCccccccCCC--C------------ChhhHHHHHh------------cCccccCCCCCCCEEEEEeCCCC
Q 003886 718 PDWCYVESYGSKGKDSFTES--P------------SVEDLTRFHS------------KSPISHISKVKTPTIFLLGAQDL 771 (789)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~~~~------------~sp~~~~~~i~~P~Lii~G~~D~ 771 (789)
+.+.....+........... . .......+.. ......+.++++|+|+++|++|.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~ 237 (285)
T 1c4x_A 158 PRLTPYRELIHSFVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHDVLVFHGRQDR 237 (285)
T ss_dssp CCHHHHHHHHHTTSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTCCSCEEEEEETTCS
T ss_pred ccHHHHHHHHHHhhcCcccccCcHHHHHHHHHhccCHHHHHHHHHHhccccccccccccchhhhccCCCCEEEEEeCCCe
Confidence 00000000000000000000 0 0000010000 01123467899999999999999
Q ss_pred CCChHHHHHHHHHCCC
Q 003886 772 RVPVSNGLQVIYHIPF 787 (789)
Q Consensus 772 ~vp~~~~~~l~~~l~~ 787 (789)
.+|++.+..+++.+++
T Consensus 238 ~~p~~~~~~~~~~~~~ 253 (285)
T 1c4x_A 238 IVPLDTSLYLTKHLKH 253 (285)
T ss_dssp SSCTHHHHHHHHHCSS
T ss_pred eeCHHHHHHHHHhCCC
Confidence 9999999999998865
|
| >3g9x_A Haloalkane dehalogenase; alpha/beta hydrolase, helical CAP domain, catalytic triad (A His272, Glu130), mutant, I135F, haloalkanes; 0.95A {Rhodococcus SP} SCOP: c.69.1.8 PDB: 3fwh_A 3fbw_A 3rlt_A 3rk4_A 1bn6_A 1bn7_A 4fwb_A 1cqw_A 3sk0_A 2v9z_A | Back alignment and structure |
|---|
Probab=99.57 E-value=8.9e-15 Score=152.50 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=87.1
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~ 651 (789)
+|..++....-+ ...|+||++||++.+ ...|......|+ +||.|+++|+|| +|.+.... ....
T Consensus 18 ~g~~l~~~~~g~------~~~~~vl~lHG~~~~--~~~~~~~~~~l~-~~~~v~~~d~~G---~G~s~~~~-----~~~~ 80 (299)
T 3g9x_A 18 LGERMHYVDVGP------RDGTPVLFLHGNPTS--SYLWRNIIPHVA-PSHRCIAPDLIG---MGKSDKPD-----LDYF 80 (299)
T ss_dssp TTEEEEEEEESC------SSSCCEEEECCTTCC--GGGGTTTHHHHT-TTSCEEEECCTT---STTSCCCC-----CCCC
T ss_pred CCeEEEEEecCC------CCCCEEEEECCCCcc--HHHHHHHHHHHc-cCCEEEeeCCCC---CCCCCCCC-----Cccc
Confidence 677777655533 235789999997764 456666667774 699999999998 55443211 1345
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
++++.+.+..+++. ++.+++.|+|||+||++++.++.++|++++++|+.++..
T Consensus 81 ~~~~~~~~~~~~~~--~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 133 (299)
T 3g9x_A 81 FDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIR 133 (299)
T ss_dssp HHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHSGGGEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHH--hCCCcEEEEEeCccHHHHHHHHHhcchheeEEEEecCCc
Confidence 77777777777776 456789999999999999999999999999999988544
|
| >3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0 | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-14 Score=146.45 Aligned_cols=104 Identities=18% Similarity=0.165 Sum_probs=80.4
Q ss_pred cEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCcc
Q 003886 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (789)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (789)
|+||++||.+.+ ...|......|+++||.|+++|+|| +|.+.... .....+++..+.+..+++.-.. .++
T Consensus 5 ~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~~~----~~~~~~~~~~~~l~~~l~~l~~-~~~ 74 (258)
T 3dqz_A 5 HHFVLVHNAYHG--AWIWYKLKPLLESAGHRVTAVELAA---SGIDPRPI----QAVETVDEYSKPLIETLKSLPE-NEE 74 (258)
T ss_dssp CEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTT---STTCSSCG----GGCCSHHHHHHHHHHHHHTSCT-TCC
T ss_pred CcEEEECCCCCc--cccHHHHHHHHHhCCCEEEEecCCC---CcCCCCCC----CccccHHHhHHHHHHHHHHhcc-cCc
Confidence 899999997764 5567778889999999999999998 55443211 1123566666666666665211 378
Q ss_pred EEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 673 v~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
+.|+|||+||++++.++.++|++++++|+.+|..
T Consensus 75 ~~lvGhS~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 108 (258)
T 3dqz_A 75 VILVGFSFGGINIALAADIFPAKIKVLVFLNAFL 108 (258)
T ss_dssp EEEEEETTHHHHHHHHHTTCGGGEEEEEEESCCC
T ss_pred eEEEEeChhHHHHHHHHHhChHhhcEEEEecCCC
Confidence 9999999999999999999999999999998854
|
| >2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP: c.69.1.14 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=145.57 Aligned_cols=151 Identities=13% Similarity=0.142 Sum_probs=111.4
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEE--cCCCCCCCCchhh--ccCCCCCC----cccHHHHHHHHHH
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIV--NYRGSLGFGEEAL--QSLPGKVG----SQDVNDVLTAIDH 661 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~--d~rGs~G~G~~~~--~~~~~~~~----~~~~~D~~~~i~~ 661 (789)
++.|+||++||++.. ...|......|++ ||.|+++ |++| +|.+.. ....+.+. ..+++++.+.+++
T Consensus 36 ~~~~~vv~~HG~~~~--~~~~~~~~~~l~~-g~~v~~~~~d~~g---~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 109 (226)
T 2h1i_A 36 TSKPVLLLLHGTGGN--ELDLLPLAEIVDS-EASVLSVRGNVLE---NGMPRFFRRLAEGIFDEEDLIFRTKELNEFLDE 109 (226)
T ss_dssp TTSCEEEEECCTTCC--TTTTHHHHHHHHT-TSCEEEECCSEEE---TTEEESSCEEETTEECHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEecCCCC--hhHHHHHHHHhcc-CceEEEecCcccC---CcchhhccccCccCcChhhHHHHHHHHHHHHHH
Confidence 578999999997764 4567777778877 9999999 7766 333211 00011111 1124456666766
Q ss_pred HHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChh
Q 003886 662 VIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVE 741 (789)
Q Consensus 662 l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (789)
+.++..++.++++++|||+||++++.++.++|++++++|+.+|......
T Consensus 110 ~~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~------------------------------- 158 (226)
T 2h1i_A 110 AAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRRG------------------------------- 158 (226)
T ss_dssp HHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCSS-------------------------------
T ss_pred HHhhcCCCcccEEEEEEChHHHHHHHHHHhChhhhCEEEEeCCCCCcCc-------------------------------
Confidence 6777667889999999999999999999999999999999998753210
Q ss_pred hHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 742 DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 742 ~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
......+++|+|+++|++|..+|++.+.++++.+++
T Consensus 159 ----------~~~~~~~~~p~l~~~G~~D~~~~~~~~~~~~~~l~~ 194 (226)
T 2h1i_A 159 ----------MQLANLAGKSVFIAAGTNDPICSSAESEELKVLLEN 194 (226)
T ss_dssp ----------CCCCCCTTCEEEEEEESSCSSSCHHHHHHHHHHHHT
T ss_pred ----------cccccccCCcEEEEeCCCCCcCCHHHHHHHHHHHHh
Confidence 011234578999999999999999999999998864
|
| >3qvm_A OLEI00960; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase fold, hydrolase; 2.00A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.2e-15 Score=151.54 Aligned_cols=186 Identities=14% Similarity=0.214 Sum_probs=117.3
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.|+||++||.+.+ ...|......|++ ||.|+++|+|| +|.+..... .......++++.+.+..+++. ++.+
T Consensus 28 ~~~vv~lHG~~~~--~~~~~~~~~~l~~-g~~v~~~d~~G---~G~s~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~ 98 (282)
T 3qvm_A 28 EKTVLLAHGFGCD--QNMWRFMLPELEK-QFTVIVFDYVG---SGQSDLESF-STKRYSSLEGYAKDVEEILVA--LDLV 98 (282)
T ss_dssp SCEEEEECCTTCC--GGGGTTTHHHHHT-TSEEEECCCTT---STTSCGGGC-CTTGGGSHHHHHHHHHHHHHH--TTCC
T ss_pred CCeEEEECCCCCC--cchHHHHHHHHhc-CceEEEEecCC---CCCCCCCCC-CccccccHHHHHHHHHHHHHH--cCCC
Confidence 3899999997664 4567667778877 99999999998 444433221 111222566777777766665 3568
Q ss_pred cEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcC--CCCC----------------cch--hhh-hccCcc
Q 003886 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGT--TDIP----------------DWC--YVE-SYGSKG 730 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~--~~~~----------------~~~--~~~-~~~~~~ 730 (789)
+++|+|||+||.+++.++.++|++++++|+.+|.......... .... .|. +.. .+....
T Consensus 99 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (282)
T 3qvm_A 99 NVSIIGHSVSSIIAGIASTHVGDRISDITMICPSPCFMNFPPDYVGGFERDDLEELINLMDKNYIGWANYLAPLVMGASH 178 (282)
T ss_dssp SEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBSBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCTTS
T ss_pred ceEEEEecccHHHHHHHHHhCchhhheEEEecCcchhccCchhhhchhccccHHHHHHHHhcchhhHHHHHHhhccCCcc
Confidence 9999999999999999999999999999999987542111000 0000 000 000 000000
Q ss_pred --------ccccCCCCChhh----HHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 731 --------KDSFTESPSVED----LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 731 --------~~~~~~~~~~~~----~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.+.+... .... .......+....+.++++|+|+++|++|..+|++.+.++.+.+++
T Consensus 179 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~~ 246 (282)
T 3qvm_A 179 SSELIGELSGSFCTT-DPIVAKTFAKATFFSDYRSLLEDISTPALIFQSAKDSLASPEVGQYMAENIPN 246 (282)
T ss_dssp CHHHHHHHHHHHHHS-CHHHHHHHHHHHHSCBCGGGGGGCCSCEEEEEEEECTTCCHHHHHHHHHHSSS
T ss_pred chhhHHHHHHHHhcC-CcHHHHHHHHHHhcccHHHHHhcCCCCeEEEEeCCCCcCCHHHHHHHHHhCCC
Confidence 0000000 0000 011112233455788999999999999999999999999998865
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.57 E-value=6.1e-13 Score=154.26 Aligned_cols=299 Identities=16% Similarity=0.121 Sum_probs=176.1
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (789)
.||||+++++... ..+.++++. ++.....++... ..+...+|||||++||..+..+ ...
T Consensus 26 ~spdg~~l~~~~~----------~~v~l~~~~-~~~~~~~~~~h~-----~~v~~~~~spdg~~lasg~~d~-----~v~ 84 (611)
T 1nr0_A 26 NTPAGDKIQYCNG----------TSVYTVPVG-SLTDTEIYTEHS-----HQTTVAKTSPSGYYCASGDVHG-----NVR 84 (611)
T ss_dssp ECTTSSEEEEEET----------TEEEEEETT-CSSCCEEECCCS-----SCEEEEEECTTSSEEEEEETTS-----EEE
T ss_pred eCCCCCEEEeCCC----------CEEEEecCC-CcccCeEecCCC-----CceEEEEECCCCcEEEEEeCCC-----CEE
Confidence 4799999998631 145555552 222233344333 4588999999999999887654 567
Q ss_pred Eec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC--CCCCccCCCCCCCCCCcCCCCCCCccee
Q 003886 184 LWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP--SKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (789)
Q Consensus 184 i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (789)
+|+ .++......+. ...+.| ..++|||||++|+.++.+... ....|+. .........+........|
T Consensus 85 lWd~~~~~~~~~~~~~-~~~~~v------~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f 155 (611)
T 1nr0_A 85 IWDTTQTTHILKTTIP-VFSGPV------KDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQARAMNSVDF 155 (611)
T ss_dssp EEESSSTTCCEEEEEE-CSSSCE------EEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCCCCSSCEEEEEE
T ss_pred EeECCCCcceeeEeec-ccCCce------EEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcceecCCCCCceEEEE
Confidence 773 23322222221 122333 799999999999987764321 1122331 2222233445555566778
Q ss_pred eCCccc-ccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceE
Q 003886 260 EEDWGE-TYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (789)
Q Consensus 260 ~~d~g~-~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~ 338 (789)
.|+... ..++..+..|.+||..+++..... ......+..++|+|||+. |+..+. +..|.
T Consensus 156 ~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l-~~H~~~V~~v~fspdg~~----las~s~---------------D~~i~ 215 (611)
T 1nr0_A 156 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTF-GEHTKFVHSVRYNPDGSL----FASTGG---------------DGTIV 215 (611)
T ss_dssp CSSSSCEEEEEETTSCEEEEETTTBEEEEEE-CCCSSCEEEEEECTTSSE----EEEEET---------------TSCEE
T ss_pred CCCCCeEEEEEeCCCeEEEEECCCCeEeeee-ccccCceEEEEECCCCCE----EEEEEC---------------CCcEE
Confidence 888543 455667788999998887654431 223346789999999997 776652 33677
Q ss_pred EEecccccchhhhhhhhcCCCCCCCe-eecC-------CCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEee
Q 003886 339 AVRVSLYKSEASELELKESSSEDLPV-VNLT-------ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 410 (789)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt-------~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d 410 (789)
++|+ .+++. ..+. .+.+.+...+|||||++|+..+.+. .+.+||
T Consensus 216 lwd~-----------------~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~-----------~v~lWd 267 (611)
T 1nr0_A 216 LYNG-----------------VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK-----------TIKIWN 267 (611)
T ss_dssp EEET-----------------TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS-----------EEEEEE
T ss_pred EEEC-----------------CCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCC-----------eEEEEe
Confidence 8886 33332 3332 4566788899999999998777553 588899
Q ss_pred cCCCCCCCccc-c------e---------------eeEEeeeeccCCC---CCccccccCCCCCccccCCCEEEEEEEeC
Q 003886 411 WPTNGNFSSLE-K------I---------------VDVIPVVQCAEGD---CFPGLYSSSILSNPWLSDGCTMLLSSIWG 465 (789)
Q Consensus 411 ~~~~~~~~~t~-~------~---------------~~v~~~~~~~~~~---~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~ 465 (789)
+.++....... . . +..+.++...... .+.| +...+..+.|+|||+.| +++..+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g-h~~~v~~l~~spdg~~l-~s~s~D 345 (611)
T 1nr0_A 268 VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG-HNKAITALSSSADGKTL-FSADAE 345 (611)
T ss_dssp TTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEE-EEEETT
T ss_pred CCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC-CCCCEEEEEEeCCCCEE-EEEeCC
Confidence 87654321000 0 0 0000111100000 0001 11234567899999966 555556
Q ss_pred CeEEEEEEECCCCcEEEec
Q 003886 466 SSQVIISVNVSSGELLRIT 484 (789)
Q Consensus 466 ~~~~l~~~dl~tg~~~~lt 484 (789)
+... .+|+.+++..++.
T Consensus 346 ~~v~--~Wd~~~~~~~~~~ 362 (611)
T 1nr0_A 346 GHIN--SWDISTGISNRVF 362 (611)
T ss_dssp SCEE--EEETTTCCEEECS
T ss_pred CcEE--EEECCCCceeeec
Confidence 6554 4578888877664
|
| >3r40_A Fluoroacetate dehalogenase; FACD, defluorinase, alpha/beta hydrolase, hydrolase; 1.05A {Rhodopseudomonas palustris} PDB: 3r3w_A 3r3x_A 3r3v_A 3r3u_A 3r3z_A 3r41_A 3r3y_A | Back alignment and structure |
|---|
Probab=99.57 E-value=4.8e-14 Score=147.35 Aligned_cols=121 Identities=12% Similarity=0.211 Sum_probs=89.6
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
.+|.+++....- +.|.||++||.+.+ ...|......|++ ||.|+++|+|| +|.+............
T Consensus 20 ~~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~l~~-~~~v~~~D~~G---~G~S~~~~~~~~~~~~ 85 (306)
T 3r40_A 20 TSSGRIFARVGG--------DGPPLLLLHGFPQT--HVMWHRVAPKLAE-RFKVIVADLPG---YGWSDMPESDEQHTPY 85 (306)
T ss_dssp CTTCCEEEEEEE--------CSSEEEEECCTTCC--GGGGGGTHHHHHT-TSEEEEECCTT---STTSCCCCCCTTCGGG
T ss_pred eCCEEEEEEEcC--------CCCeEEEECCCCCC--HHHHHHHHHHhcc-CCeEEEeCCCC---CCCCCCCCCCcccCCC
Confidence 367777655432 34789999998764 4567777788877 99999999998 5554322211111234
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
.++++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.+|...
T Consensus 86 ~~~~~~~~~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 140 (306)
T 3r40_A 86 TKRAMAKQLIEAMEQ--LGHVHFALAGHNRGARVSYRLALDSPGRLSKLAVLDILPT 140 (306)
T ss_dssp SHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCH
T ss_pred CHHHHHHHHHHHHHH--hCCCCEEEEEecchHHHHHHHHHhChhhccEEEEecCCCC
Confidence 567777777777766 4567899999999999999999999999999999997543
|
| >1iup_A META-cleavage product hydrolase; aromatic compounds, cumene, isopropylbenzene, META-cleavage compound hydrolase; 1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB: 1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A 2d0d_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3.2e-14 Score=147.91 Aligned_cols=196 Identities=17% Similarity=0.201 Sum_probs=116.5
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-chhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~-~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
+|..++....- ..|.||++||.+.+.. ...|......| +.||.|+++|+|| +|.+.... . ...
T Consensus 13 ~g~~l~y~~~G--------~g~~vvllHG~~~~~~~~~~w~~~~~~L-~~~~~vi~~Dl~G---~G~S~~~~---~-~~~ 76 (282)
T 1iup_A 13 AGVLTNYHDVG--------EGQPVILIHGSGPGVSAYANWRLTIPAL-SKFYRVIAPDMVG---FGFTDRPE---N-YNY 76 (282)
T ss_dssp TTEEEEEEEEC--------CSSEEEEECCCCTTCCHHHHHTTTHHHH-TTTSEEEEECCTT---STTSCCCT---T-CCC
T ss_pred CCEEEEEEecC--------CCCeEEEECCCCCCccHHHHHHHHHHhh-ccCCEEEEECCCC---CCCCCCCC---C-CCC
Confidence 56666544321 2367999999543222 22455555666 6789999999998 56543211 1 123
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccch-------hhhhcCCCCCcchhh
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL-------ALMVGTTDIPDWCYV 723 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~-------~~~~~~~~~~~~~~~ 723 (789)
.+++..+.+..+++. ++.+++.|+|||+||.+++.+|.++|++++++|+.+|.... ...... .+.....
T Consensus 77 ~~~~~a~dl~~~l~~--l~~~~~~lvGhS~GG~ia~~~A~~~P~~v~~lvl~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 152 (282)
T 1iup_A 77 SKDSWVDHIIGIMDA--LEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGY--TPSIENM 152 (282)
T ss_dssp CHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHSGGGEEEEEEESCCCSCCCCCHHHHHHHTC--CSCHHHH
T ss_pred CHHHHHHHHHHHHHH--hCCCceEEEEECHhHHHHHHHHHHChHHHHHHHeeCCccCCCCCCHHHHHHhcC--CCcHHHH
Confidence 466666666666665 34578999999999999999999999999999999875421 000000 0000000
Q ss_pred ----hhccCc-------ccc-cc--CCCCCh-hhHHHH--------Hh-c-CccccCCCCCCCEEEEEeCCCCCCChHHH
Q 003886 724 ----ESYGSK-------GKD-SF--TESPSV-EDLTRF--------HS-K-SPISHISKVKTPTIFLLGAQDLRVPVSNG 778 (789)
Q Consensus 724 ----~~~~~~-------~~~-~~--~~~~~~-~~~~~~--------~~-~-sp~~~~~~i~~P~Lii~G~~D~~vp~~~~ 778 (789)
..+... ..+ ++ ...+.. .....+ .+ . .....+.++++|+|+++|++|..+|++.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~p~~~~ 232 (282)
T 1iup_A 153 RNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSS 232 (282)
T ss_dssp HHHHHHHCSSGGGCCHHHHHHHHHHHTSTTHHHHHHHHSCSSTHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSSCHHHH
T ss_pred HHHHHHhhcCcccCCHHHHHHHHhhccChHHHHHHHHHHhccccccccccccchhhhhhcCCCEEEEecCCCCCCCHHHH
Confidence 000000 000 00 000000 000000 00 0 01135678999999999999999999999
Q ss_pred HHHHHHCCC
Q 003886 779 LQVIYHIPF 787 (789)
Q Consensus 779 ~~l~~~l~~ 787 (789)
.++.+.+++
T Consensus 233 ~~~~~~~~~ 241 (282)
T 1iup_A 233 LRLGELIDR 241 (282)
T ss_dssp HHHHHHCTT
T ss_pred HHHHHhCCC
Confidence 999988865
|
| >2yys_A Proline iminopeptidase-related protein; TTHA1809, structural genomics, unknown function; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.2e-14 Score=147.33 Aligned_cols=121 Identities=17% Similarity=0.231 Sum_probs=87.7
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch-hhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
..+|..++....-|+ ..|.||++||.+.+ .. .|......| +.||.|+++|+|| +|.+... +....
T Consensus 9 ~~~g~~l~~~~~G~~------~~~~vvllHG~~~~--~~~~w~~~~~~L-~~~~~vi~~Dl~G---~G~S~~~--~~~~~ 74 (286)
T 2yys_A 9 PVGEAELYVEDVGPV------EGPALFVLHGGPGG--NAYVLREGLQDY-LEGFRVVYFDQRG---SGRSLEL--PQDPR 74 (286)
T ss_dssp ECSSCEEEEEEESCT------TSCEEEEECCTTTC--CSHHHHHHHGGG-CTTSEEEEECCTT---STTSCCC--CSCGG
T ss_pred eECCEEEEEEeecCC------CCCEEEEECCCCCc--chhHHHHHHHHh-cCCCEEEEECCCC---CCCCCCC--ccCcc
Confidence 346777876655442 34789999998775 45 677777777 5689999999998 5554320 11111
Q ss_pred cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
...++++.+.+..+++. ++.+++.|+|||+||.+++.++.++|+ ++++|+.+|..+
T Consensus 75 ~~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~-v~~lvl~~~~~~ 130 (286)
T 2yys_A 75 LFTVDALVEDTLLLAEA--LGVERFGLLAHGFGAVVALEVLRRFPQ-AEGAILLAPWVN 130 (286)
T ss_dssp GCCHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHCTT-EEEEEEESCCCB
T ss_pred cCcHHHHHHHHHHHHHH--hCCCcEEEEEeCHHHHHHHHHHHhCcc-hheEEEeCCccC
Confidence 23466666666666665 345789999999999999999999999 999999998653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.6e-13 Score=140.41 Aligned_cols=258 Identities=8% Similarity=-0.017 Sum_probs=147.7
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEE-EEeCCCCCeEEEEecCCCCCC
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASA-VVPSPSGSKLLVVRNPENESP 179 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~-~~~SPdG~~la~~~~~~~~~~ 179 (789)
....+|||+++.+.... ...++.+++.+..-....++.. ..... ++|||||++|+ +....++..
T Consensus 44 ~~~~s~dg~~l~~~~~~--------~~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~-~~~~~~~~~ 108 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDF--------CQTLVQIETQLEPPKVVAIQEG------QSSMADVDITPDDQFAV-TVTGLNHPF 108 (331)
T ss_dssp EEEECSSSCEEEEEEST--------TCEEEEEECSSSSCEEEEEEEC------SSCCCCEEECTTSSEEE-ECCCSSSSC
T ss_pred eEEEcCCCCEEEEEeCC--------CCeEEEEECCCCceeEEecccC------CCCccceEECCCCCEEE-EecCCCCcc
Confidence 44467999977554321 2377887763321102222222 23445 89999999998 544332222
Q ss_pred eEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcce
Q 003886 180 IQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 258 (789)
Q Consensus 180 ~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (789)
.++.++ ..++..+.+...... ..+.|||||++|++.....
T Consensus 109 ~i~v~d~~~~~~~~~~~~~~~~----------~~~~~spdg~~l~~~~~~~----------------------------- 149 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTIPIPYDA----------VGIAISPNGNGLILIDRSS----------------------------- 149 (331)
T ss_dssp EEEEEETTTTEEEEEEECCTTE----------EEEEECTTSSCEEEEEETT-----------------------------
T ss_pred cEEEEECCCCCeEEEEECCCCc----------cceEECCCCCEEEEEecCC-----------------------------
Confidence 565555 456655555443333 6899999999877654421
Q ss_pred eeCCcccccCCccCce-EEEEEccCC-ce----EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeecc
Q 003886 259 WEEDWGETYAGKRQPS-LFVININSG-EV----QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYN 332 (789)
Q Consensus 259 ~~~d~g~~~~~~~~~~-l~v~d~~~g-~~----~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~ 332 (789)
.. |.+|+++.. .+ ... .........++|+|||+. |+++..
T Consensus 150 --------------~~~i~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~spdg~~----l~v~~~-------------- 195 (331)
T 3u4y_A 150 --------------ANTVRRFKIDADGVLFDTGQEF--ISGGTRPFNITFTPDGNF----AFVANL-------------- 195 (331)
T ss_dssp --------------TTEEEEEEECTTCCEEEEEEEE--ECSSSSEEEEEECTTSSE----EEEEET--------------
T ss_pred --------------CceEEEEEECCCCcEeecCCcc--ccCCCCccceEECCCCCE----EEEEeC--------------
Confidence 23 566665432 22 111 123334678899999997 666552
Q ss_pred CCcceEEEecccccchhhhhhhhcCCCCCCC----eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEE
Q 003886 333 RPCALYAVRVSLYKSEASELELKESSSEDLP----VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 408 (789)
Q Consensus 333 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~ 408 (789)
....|+++|+ .+++ ...+.. ......++|||||++|++.... ...|++
T Consensus 196 ~~~~v~v~d~-----------------~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~----------~~~i~~ 247 (331)
T 3u4y_A 196 IGNSIGILET-----------------QNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTES----------TVDVFN 247 (331)
T ss_dssp TTTEEEEEEC-----------------SSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSS----------EEEEEE
T ss_pred CCCeEEEEEC-----------------CCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcC----------CCEEEE
Confidence 2236888887 4444 334433 3456789999999988665532 235999
Q ss_pred eecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC
Q 003886 409 IDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA 486 (789)
Q Consensus 409 ~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~ 486 (789)
+|+.+++...+.. +..-+. .... .......+.|+|||++|+++....+ .|..+|+.+..+..+...
T Consensus 248 ~d~~~~~~~~~~~----~~~~~~--~~~~----~~~~~~~~~~spdg~~l~v~~~~~~--~v~v~d~~~~~~~~~~~~ 313 (331)
T 3u4y_A 248 FNQLSGTLSFVKS----FGHGLL--IDPR----PLFGANQMALNKTETKLFISANISR--ELKVFTISGKVVGYVAGI 313 (331)
T ss_dssp EETTTTEEEEEEE----EECCCC--CCCG----GGTTCCCEEECTTSSEEEEEETTTT--EEEEEETTSCEEEECTTC
T ss_pred EECCCCceeeecc----cccccc--cCCC----CcccccceEECCCCCEEEEecCCCC--cEEEEEecCCcccceecc
Confidence 9988755422110 000000 0000 0011134689999999887765444 456667777766665443
|
| >3e0x_A Lipase-esterase related protein; APC60309, clostridium acetobutylicum ATCC 824, structural genomics, PSI-2; HET: MSE; 1.45A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.9e-14 Score=140.90 Aligned_cols=180 Identities=13% Similarity=0.235 Sum_probs=113.9
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHH------
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVI------ 663 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~------ 663 (789)
++.|+||++||.+.+ ...|. ....|+ +||.|+++|+|| +|.+.. .....+++..+.+..++
T Consensus 14 ~~~~~vv~~hG~~~~--~~~~~-~~~~l~-~g~~v~~~d~~g---~g~s~~------~~~~~~~~~~~~~~~~~~~~~~~ 80 (245)
T 3e0x_A 14 KSPNTLLFVHGSGCN--LKIFG-ELEKYL-EDYNCILLDLKG---HGESKG------QCPSTVYGYIDNVANFITNSEVT 80 (245)
T ss_dssp TCSCEEEEECCTTCC--GGGGT-TGGGGC-TTSEEEEECCTT---STTCCS------CCCSSHHHHHHHHHHHHHHCTTT
T ss_pred CCCCEEEEEeCCccc--HHHHH-HHHHHH-hCCEEEEecCCC---CCCCCC------CCCcCHHHHHHHHHHHHHhhhhH
Confidence 357899999997764 44555 555555 899999999998 444321 11234566666666555
Q ss_pred HcCCCCCccEEEEEcCccHHHHHHHHHh-CCCceeEEEEeCCccchhhhh-------cCCCCCcchhhhhccC---c---
Q 003886 664 DMGLANPSKVTVVGGSHGGFLTTHLIGQ-APDKFVAAAARNPLCNLALMV-------GTTDIPDWCYVESYGS---K--- 729 (789)
Q Consensus 664 ~~~~~d~~rv~l~G~S~GG~~a~~~~~~-~p~~~~a~v~~~pv~~~~~~~-------~~~~~~~~~~~~~~~~---~--- 729 (789)
+. ++ +++|+|||+||.+++.++.+ +|+ ++++|+.+|........ .......+........ .
T Consensus 81 ~~--~~--~~~l~G~S~Gg~~a~~~a~~~~p~-v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (245)
T 3e0x_A 81 KH--QK--NITLIGYSMGGAIVLGVALKKLPN-VRKVVSLSGGARFDKLDKDFMEKIYHNQLDNNYLLECIGGIDNPLSE 155 (245)
T ss_dssp TT--CS--CEEEEEETHHHHHHHHHHTTTCTT-EEEEEEESCCSBCTTSCHHHHHHHHTTCCCHHHHHHHHTCSCSHHHH
T ss_pred hh--cC--ceEEEEeChhHHHHHHHHHHhCcc-ccEEEEecCCCccccccHHHHHHHHHHHHHhhcCcccccccchHHHH
Confidence 33 33 89999999999999999999 999 99999999976541110 0000000000000000 0
Q ss_pred -cccccCCCCC--hhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 730 -GKDSFTESPS--VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 730 -~~~~~~~~~~--~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
....+...+. ..........+....+.++++|+|+++|++|..+|++.+.++++.+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~ 216 (245)
T 3e0x_A 156 KYFETLEKDPDIMINDLIACKLIDLVDNLKNIDIPVKAIVAKDELLTLVEYSEIIKKEVEN 216 (245)
T ss_dssp HHHTTSCSSHHHHHHHHHHHHHCBCGGGGGGCCSCEEEEEETTCSSSCHHHHHHHHHHSSS
T ss_pred HHHHHHhcCcHHHHHHHHHhccccHHHHHHhCCCCEEEEEeCCCCCCCHHHHHHHHHHcCC
Confidence 0000011000 011122233455566788999999999999999999999999998865
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-13 Score=144.72 Aligned_cols=266 Identities=11% Similarity=0.130 Sum_probs=147.0
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (789)
.||||+ + |..+.. .....++++++.. ++...+... .........++|||||++|++....+ +.-.+|.
T Consensus 47 ~spdg~-l-~~~~~~-----~~~~~v~~~~~~~--g~~~~~~~~--~~~~~~p~~~a~spdg~~l~~~~~~~-~~v~v~~ 114 (347)
T 3hfq_A 47 LSAKDC-L-YSVDKE-----DDEGGIAAWQIDG--QTAHKLNTV--VAPGTPPAYVAVDEARQLVYSANYHK-GTAEVMK 114 (347)
T ss_dssp ECTTCE-E-EEEEEE-----TTEEEEEEEEEET--TEEEEEEEE--EEESCCCSEEEEETTTTEEEEEETTT-TEEEEEE
T ss_pred EccCCe-E-EEEEec-----CCCceEEEEEecC--CcEEEeeee--ecCCCCCEEEEECCCCCEEEEEeCCC-CEEEEEE
Confidence 469998 5 443321 1245778887733 232333220 00113466789999999998876433 3333444
Q ss_pred EecCCceeEEEecCCCccccc--cCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeC
Q 003886 184 LWSQSQLEKEFHVPQTVHGSV--YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 261 (789)
Q Consensus 184 i~~~~~~~~~~~~~~~~~g~v--~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (789)
+..++....+........+.. -.......+.|||||+ |+. +..
T Consensus 115 ~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v-~~~--------------------------------- 159 (347)
T 3hfq_A 115 IAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAV-IDL--------------------------------- 159 (347)
T ss_dssp ECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEE-EET---------------------------------
T ss_pred eCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEE-EeC---------------------------------
Confidence 444455444443321111110 0001125689999999 444 322
Q ss_pred CcccccCCccCceEEEEEcc-CCceEecc--CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceE
Q 003886 262 DWGETYAGKRQPSLFVININ-SGEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (789)
Q Consensus 262 d~g~~~~~~~~~~l~v~d~~-~g~~~~l~--~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~ 338 (789)
....|++|+++ +|+...+. ..........++|+|||+. |+++... ...|+
T Consensus 160 ---------~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~----l~v~~~~--------------~~~v~ 212 (347)
T 3hfq_A 160 ---------GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQY----AFLAGEL--------------SSQIA 212 (347)
T ss_dssp ---------TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSE----EEEEETT--------------TTEEE
T ss_pred ---------CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCE----EEEEeCC--------------CCEEE
Confidence 22578888887 66654331 0222234567899999997 6665421 12455
Q ss_pred EEecccccchhhhhhhhcCCCCCCCeeec---CCCC------CccCcceecCCCCEEEEEecCCCCCCCCccccceeEEe
Q 003886 339 AVRVSLYKSEASELELKESSSEDLPVVNL---TESI------SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 409 (789)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~L---t~~~------~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~ 409 (789)
++++.. .+++.+.+ .... .....++|||||++|+...... ..|.+|
T Consensus 213 v~~~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~----------~~v~v~ 267 (347)
T 3hfq_A 213 SLKYDT---------------QTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGY----------NTLAVF 267 (347)
T ss_dssp EEEEET---------------TTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETT----------TEEEEE
T ss_pred EEEecC---------------CCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCC----------CEEEEE
Confidence 555420 23332221 1111 2355689999999886655332 358888
Q ss_pred ecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003886 410 DWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (789)
Q Consensus 410 d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt 484 (789)
|+..++.. ..+..... .. ..+..+.|+|||++|++.....+...+|.+|..+|+++.+.
T Consensus 268 ~~~~~g~~-------~~~~~~~~--~~-------~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~ 326 (347)
T 3hfq_A 268 AVTADGHL-------TLIQQIST--EG-------DFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQ 326 (347)
T ss_dssp EECGGGCE-------EEEEEEEC--SS-------SCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred EECCCCcE-------EEeEEEec--CC-------CCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEecc
Confidence 87643211 11111110 00 12346789999998887766668888999999999988764
|
| >1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP: c.69.1.29 PDB: 1r1d_A* 4diu_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-14 Score=145.58 Aligned_cols=179 Identities=20% Similarity=0.311 Sum_probs=108.7
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc-HHHHHHHHHHHHHcCCCCC
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD-VNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~-~~D~~~~i~~l~~~~~~d~ 670 (789)
.|.||++||.+++ ...|......|+++||.|+++|+|| +|.+.... ..+...+ .+|+.++++++.+.+ .
T Consensus 16 ~~~vvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G---hG~s~~~~--~~~~~~~~~~d~~~~~~~l~~~~---~ 85 (247)
T 1tqh_A 16 ERAVLLLHGFTGN--SADVRMLGRFLESKGYTCHAPIYKG---HGVPPEEL--VHTGPDDWWQDVMNGYEFLKNKG---Y 85 (247)
T ss_dssp SCEEEEECCTTCC--THHHHHHHHHHHHTTCEEEECCCTT---SSSCHHHH--TTCCHHHHHHHHHHHHHHHHHHT---C
T ss_pred CcEEEEECCCCCC--hHHHHHHHHHHHHCCCEEEecccCC---CCCCHHHh--cCCCHHHHHHHHHHHHHHHHHcC---C
Confidence 4679999997654 4567777888999999999999998 45432211 1111111 345666666666553 4
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccch---hhhhcCCCCCcchhhhhc----cC------ccccccCCC
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL---ALMVGTTDIPDWCYVESY----GS------KGKDSFTES 737 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~---~~~~~~~~~~~~~~~~~~----~~------~~~~~~~~~ 737 (789)
+++.|+|||+||.+++.++.++| ++++|+.++.... ...... . ..+...+ .. ...+.+...
T Consensus 86 ~~~~lvG~SmGG~ia~~~a~~~p--v~~lvl~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (247)
T 1tqh_A 86 EKIAVAGLSLGGVFSLKLGYTVP--IEGIVTMCAPMYIKSEETMYEG--V--LEYAREYKKREGKSEEQIEQEMEKFKQT 159 (247)
T ss_dssp CCEEEEEETHHHHHHHHHHTTSC--CSCEEEESCCSSCCCHHHHHHH--H--HHHHHHHHHHHTCCHHHHHHHHHHHTTS
T ss_pred CeEEEEEeCHHHHHHHHHHHhCC--CCeEEEEcceeecCcchhhhHH--H--HHHHHHhhcccccchHHHHhhhhcccCC
Confidence 68999999999999999999988 8888765432210 000000 0 0000000 00 000000000
Q ss_pred C--ChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 738 P--SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 738 ~--~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
+ .......+. .+....+.++++|+|++||++|..+|++.+.++++.+++
T Consensus 160 ~~~~~~~~~~~~-~~~~~~l~~i~~P~Lii~G~~D~~~p~~~~~~~~~~~~~ 210 (247)
T 1tqh_A 160 PMKTLKALQELI-ADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIES 210 (247)
T ss_dssp CCTTHHHHHHHH-HHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHCCC
T ss_pred CHHHHHHHHHHH-HHHHhhcccCCCCEEEEecCCCCCCCcchHHHHHHhcCC
Confidence 0 001111111 122345778999999999999999999999999998875
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.2e-13 Score=142.38 Aligned_cols=261 Identities=11% Similarity=0.018 Sum_probs=154.2
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCC-CccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~-~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
...++|||||+++++....+ ..++.++ .+++..+.+.... ..++ .....+.|||||++|++.......
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~---~~v~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~~~-- 105 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKS---ESLVKIDLVTGETLGRIDLSTPEERV-----KSLFGAALSPDGKTLAIYESPVRL-- 105 (337)
T ss_dssp CCCEEECTTSSEEEEEETTT---TEEEEEETTTCCEEEEEECCBTTEEE-----ECTTCEEECTTSSEEEEEEEEEEE--
T ss_pred ccceEEcCCCCEEEEEeCCC---CeEEEEECCCCCeEeeEEcCCccccc-----ccccceEECCCCCEEEEEeccccc--
Confidence 56789999999987766432 3466666 4566555555432 0000 012689999999998886432100
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (789)
.++|.. .....|+++|+++++.... ......+..++|+|||+. |
T Consensus 106 --------------------------~~~~~~----~~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l 149 (337)
T 1pby_B 106 --------------------------ELTHFE----VQPTRVALYDAETLSRRKA--FEAPRQITMLAWARDGSK----L 149 (337)
T ss_dssp --------------------------CSSCEE----ECCCEEEEEETTTTEEEEE--EECCSSCCCEEECTTSSC----E
T ss_pred --------------------------cccccc----ccCceEEEEECCCCcEEEE--EeCCCCcceeEECCCCCE----E
Confidence 000000 0236899999999876654 233345678899999998 7
Q ss_pred EEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 314 ~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
++.. ..|+++|+ .+++...............|+|||+.|++.....
T Consensus 150 ~~~~-----------------~~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~ 195 (337)
T 1pby_B 150 YGLG-----------------RDLHVMDP-----------------EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESS 195 (337)
T ss_dssp EEES-----------------SSEEEEET-----------------TTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTT
T ss_pred EEeC-----------------CeEEEEEC-----------------CCCcEeeeeeccccCCCceeCCCccEEeeeccCC
Confidence 7762 15899998 5555433222222233558999999876554332
Q ss_pred CCC----------CC---CccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEE
Q 003886 394 SVD----------SG---AHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 460 (789)
Q Consensus 394 ~~~----------~g---~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~ 460 (789)
... .+ +......|+++|+.+++...+ .+.. . ...+..+.|+|||++|++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-----~~~~---~----------~~~~~~~~~s~dg~~l~~ 257 (337)
T 1pby_B 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMR-----EVRI---M----------DVFYFSTAVNPAKTRAFG 257 (337)
T ss_dssp TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEE-----EEEE---C----------SSCEEEEEECTTSSEEEE
T ss_pred CceeeeeeccccccccccccccccceEEEeCCCCCceEe-----ecCC---C----------CCceeeEEECCCCCEEEE
Confidence 100 00 000112588899877554211 0000 0 011235689999998876
Q ss_pred EEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 461 SSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 461 ~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
. ...|+.+|+.+++...............++++|+.+++. .. ...|.++++.++
T Consensus 258 ~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~---~~~i~v~d~~~~ 311 (337)
T 1pby_B 258 A-----YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLG-GA---LGDLAAYDAETL 311 (337)
T ss_dssp E-----ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEE-SB---SSEEEEEETTTC
T ss_pred e-----CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEE-cC---CCcEEEEECcCC
Confidence 6 357889999988876554433333456889999987765 22 356888887644
|
| >1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune system; 1.71A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.56 E-value=8.1e-15 Score=152.17 Aligned_cols=198 Identities=15% Similarity=0.150 Sum_probs=122.0
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH---HHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
.|..+..+ +.|.+ .|+||++||++.......|.. ..+.+++.||+|+++|++++.++.. +... ..+
T Consensus 21 ~~~~~~~~-~~P~~------~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~pd~~~~~~~~~-~~~~---~~~ 89 (280)
T 1r88_A 21 MGRDIPVA-FLAGG------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGAYSMYTN-WEQD---GSK 89 (280)
T ss_dssp TTEEEEEE-EECCS------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCTTSTTSB-CSSC---TTC
T ss_pred cCCcceEE-EeCCC------CCEEEEECCCCCCCChhhhhhcccHHHHHhcCCeEEEEECCCCCCccCC-CCCC---CCC
Confidence 57788888 77863 389999999854333445543 3456778899999999987554421 1110 111
Q ss_pred cccHHH-H-HHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhc
Q 003886 649 SQDVND-V-LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 726 (789)
Q Consensus 649 ~~~~~D-~-~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~ 726 (789)
...+ + .+.+.++.++-.+|+++++|+|+||||++++.++.++|++|+++|+.+|..++........+... . ...
T Consensus 90 --~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~~~~~~~~-~-~~~ 165 (280)
T 1r88_A 90 --QWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYPSNTTTNGAIAAG-M-QQF 165 (280)
T ss_dssp --BHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCTTSHHHHHHHHHH-H-HHH
T ss_pred --cHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCcCCccchhhHHHH-h-hhc
Confidence 2222 1 23444444433477889999999999999999999999999999999998764321100000000 0 000
Q ss_pred cCccccccCCCCChhhHHHHHhcCccccCCCC---CCCEEEEE----eCCCCC-------CChHHHHHHHHHCCC
Q 003886 727 GSKGKDSFTESPSVEDLTRFHSKSPISHISKV---KTPTIFLL----GAQDLR-------VPVSNGLQVIYHIPF 787 (789)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i---~~P~Lii~----G~~D~~-------vp~~~~~~l~~~l~~ 787 (789)
+......+.+.+ ....+.+.+|..++.++ ..|++|+| |++|.. |+.+++.+++++|++
T Consensus 166 ~~~~~~~~~g~~---~~~~~~~~~p~~~~~~~~~~~~pv~i~~~~~~G~~D~~~~~~~~~~~~~~~~~~~~~L~~ 237 (280)
T 1r88_A 166 GGVDTNGMWGAP---QLGRWKWHDPWVHASLLAQNNTRVWVWSPTNPGASDPAAMIGQAAEAMGNSRMFYNQYRS 237 (280)
T ss_dssp HCCCTHHHHCCG---GGSTTGGGCTTTTHHHHHHTTCEEEEECCSSCCCSSGGGGTTCHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhcCCC---chhhhHhcCHHHHHHhhhccCCeEEEEeccCCCCCCcccccchhHHHHHHHHHHHHHHHH
Confidence 000000001111 01234456676655554 57999999 999984 689999999998853
|
| >1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A 1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A* 1xqx_A* 1xqy_A 1xqv_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=151.73 Aligned_cols=121 Identities=17% Similarity=0.196 Sum_probs=81.6
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~ 651 (789)
+|..++....-+ +.+.|.||++||++++. ..|......+++.||.|+++|+|| +|.+.... .....
T Consensus 13 ~g~~l~~~~~g~-----~~~~~~vvllHG~~~~~--~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~~~----~~~~~ 78 (293)
T 1mtz_A 13 NGIYIYYKLCKA-----PEEKAKLMTMHGGPGMS--HDYLLSLRDMTKEGITVLFYDQFG---CGRSEEPD----QSKFT 78 (293)
T ss_dssp TTEEEEEEEECC-----SSCSEEEEEECCTTTCC--SGGGGGGGGGGGGTEEEEEECCTT---STTSCCCC----GGGCS
T ss_pred CCEEEEEEEECC-----CCCCCeEEEEeCCCCcc--hhHHHHHHHHHhcCcEEEEecCCC---CccCCCCC----CCccc
Confidence 566665544322 12337899999976642 223333445567899999999998 55543211 11234
Q ss_pred HHHHHHHHHHHHHcCCC-CCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccch
Q 003886 652 VNDVLTAIDHVIDMGLA-NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~-d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~ 708 (789)
++++.+.+..+++. + +.+++.|+|||+||.+++.+|.++|++++++|+.+|....
T Consensus 79 ~~~~~~dl~~~~~~--l~~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~~~ 134 (293)
T 1mtz_A 79 IDYGVEEAEALRSK--LFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSV 134 (293)
T ss_dssp HHHHHHHHHHHHHH--HHTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSBH
T ss_pred HHHHHHHHHHHHHH--hcCCCcEEEEEecHHHHHHHHHHHhCchhhheEEecCCccCh
Confidence 55555555555544 2 3468999999999999999999999999999999987653
|
| >3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2, structural genomics, protein structure initiative, midwest for structural genomics; 2.00A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.7e-14 Score=147.96 Aligned_cols=185 Identities=17% Similarity=0.152 Sum_probs=111.0
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHH-CCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (789)
+.|.||++||.+.+ ...|......|++ +||.|+++|+|| +|.+..... ...+++.+.+..+++.- .+
T Consensus 20 ~~~~vv~lhG~~~~--~~~~~~~~~~l~~~~g~~v~~~d~~G---~G~s~~~~~------~~~~~~~~~~~~~l~~~-~~ 87 (272)
T 3fsg_A 20 SGTPIIFLHGLSLD--KQSTCLFFEPLSNVGQYQRIYLDLPG---MGNSDPISP------STSDNVLETLIEAIEEI-IG 87 (272)
T ss_dssp CSSEEEEECCTTCC--HHHHHHHHTTSTTSTTSEEEEECCTT---STTCCCCSS------CSHHHHHHHHHHHHHHH-HT
T ss_pred CCCeEEEEeCCCCc--HHHHHHHHHHHhccCceEEEEecCCC---CCCCCCCCC------CCHHHHHHHHHHHHHHH-hC
Confidence 35789999997664 5567666667776 799999999998 554432211 34444444444444331 24
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhcc----Ccccccc---CCCCChhh
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG----SKGKDSF---TESPSVED 742 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~ 742 (789)
.+++.|+|||+||.+++.++.++|++++++|+.+|.....................+. ......+ ........
T Consensus 88 ~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (272)
T 3fsg_A 88 ARRFILYGHSYGGYLAQAIAFHLKDQTLGVFLTCPVITADHSKRLTGKHINILEEDINPVENKEYFADFLSMNVIINNQA 167 (272)
T ss_dssp TCCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECSSCCGGGCCCCCCCCEECSCCCCCTTGGGHHHHHHHCSEESHHH
T ss_pred CCcEEEEEeCchHHHHHHHHHhChHhhheeEEECcccccCccccccccchhhhhhhhhcccCHHHHHHHHHHhccCCCch
Confidence 5789999999999999999999999999999999875332111100000000000000 0000000 00000000
Q ss_pred H-------------------HHHHhc-----CccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 743 L-------------------TRFHSK-----SPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 743 ~-------------------~~~~~~-----sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
. ..+... .+...+.++++|+|+++|++|..+|++.+.++.+.+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~ 236 (272)
T 3fsg_A 168 WHDYQNLIIPGLQKEDKTFIDQLQNNYSFTFEEKLKNINYQFPFKIMVGRNDQVVGYQEQLKLINHNEN 236 (272)
T ss_dssp HHHHHHHTHHHHHHCCHHHHHHHTTSCSCTTHHHHTTCCCSSCEEEEEETTCTTTCSHHHHHHHTTCTT
T ss_pred hHHHHHHhhhhhhhccHHHHHHHhhhcCCChhhhhhhccCCCCEEEEEeCCCCcCCHHHHHHHHHhcCC
Confidence 0 001100 01113578899999999999999999999999988764
|
| >2wue_A 2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoate hydrolase BPHD; HET: KEK; 1.80A {Mycobacterium tuberculosis} PDB: 2wud_A* 2wuf_A* 2wug_A* 2vf2_A | Back alignment and structure |
|---|
Probab=99.55 E-value=6.7e-14 Score=146.18 Aligned_cols=119 Identities=21% Similarity=0.306 Sum_probs=84.2
Q ss_pred CC-eeEEEEEEecCCCCCCCCCcEEEEEcCC-CCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCc
Q 003886 572 AQ-KPFEAIFVSSSHKKDCSCDPLIVVLHGG-PHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (789)
Q Consensus 572 ~g-~~l~~~~~~P~~~~~~~~~P~vv~~HGg-~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~ 649 (789)
+| ..++....- .++.|.||++||. |+......|......|++. |.|+++|+|| +|.+.... . ..
T Consensus 21 ~g~~~l~y~~~G------~g~~~~vvllHG~~pg~~~~~~w~~~~~~L~~~-~~via~Dl~G---~G~S~~~~---~-~~ 86 (291)
T 2wue_A 21 DGPLKLHYHEAG------VGNDQTVVLLHGGGPGAASWTNFSRNIAVLARH-FHVLAVDQPG---YGHSDKRA---E-HG 86 (291)
T ss_dssp SSEEEEEEEEEC------TTCSSEEEEECCCCTTCCHHHHTTTTHHHHTTT-SEEEEECCTT---STTSCCCS---C-CS
T ss_pred CCcEEEEEEecC------CCCCCcEEEECCCCCccchHHHHHHHHHHHHhc-CEEEEECCCC---CCCCCCCC---C-CC
Confidence 67 677654432 1234689999996 3333344666666777665 9999999998 66554211 1 12
Q ss_pred ccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
..++++.+.+..+++. ++.+++.|+|||+||.+++.+|.++|++++++|+.+|..
T Consensus 87 ~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~ 141 (291)
T 2wue_A 87 QFNRYAAMALKGLFDQ--LGLGRVPLVGNALGGGTAVRFALDYPARAGRLVLMGPGG 141 (291)
T ss_dssp SHHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSTTTEEEEEEESCSS
T ss_pred cCHHHHHHHHHHHHHH--hCCCCeEEEEEChhHHHHHHHHHhChHhhcEEEEECCCC
Confidence 3466666666666554 345789999999999999999999999999999998754
|
| >2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural genomics, joint center for structural genomics, JCSG; HET: MSE PGE; 1.96A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.6e-14 Score=148.39 Aligned_cols=119 Identities=23% Similarity=0.223 Sum_probs=87.9
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~ 651 (789)
++..++.+..-+ ...|+||++||++.+ ...|......|++ ||.|+++|+||.+|. +... .....
T Consensus 53 ~~~~~~~~~~g~------~~~~~vv~lHG~~~~--~~~~~~~~~~L~~-g~~vi~~D~~G~gG~--s~~~-----~~~~~ 116 (306)
T 2r11_A 53 RFGQTHVIASGP------EDAPPLVLLHGALFS--STMWYPNIADWSS-KYRTYAVDIIGDKNK--SIPE-----NVSGT 116 (306)
T ss_dssp TTEEEEEEEESC------TTSCEEEEECCTTTC--GGGGTTTHHHHHH-HSEEEEECCTTSSSS--CEEC-----SCCCC
T ss_pred CCceEEEEeeCC------CCCCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEecCCCCCCC--CCCC-----CCCCC
Confidence 455666555332 246899999998764 4557667778877 999999999985333 2211 11234
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccch
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~ 708 (789)
.+++.+.+..+++. ++.+++.|+|||+||++++.++.++|++++++|+.+|....
T Consensus 117 ~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 171 (306)
T 2r11_A 117 RTDYANWLLDVFDN--LGIEKSHMIGLSLGGLHTMNFLLRMPERVKSAAILSPAETF 171 (306)
T ss_dssp HHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSSBT
T ss_pred HHHHHHHHHHHHHh--cCCCceeEEEECHHHHHHHHHHHhCccceeeEEEEcCcccc
Confidence 66767666666665 45578999999999999999999999999999999997653
|
| >3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-14 Score=151.92 Aligned_cols=116 Identities=17% Similarity=0.257 Sum_probs=92.1
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CchhhHHHHHHHH-HCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHH
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~-~~~~~~~~~~~la-~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~ 653 (789)
+.++++.|.+ ++.|+||++|||++.. ....|......|+ +.||.|+++||||+++... ...++
T Consensus 84 ~~~~~~~p~~----~~~p~vv~lHGgg~~~~~~~~~~~~~~~la~~~g~~vi~~D~r~~~~~~~-----------~~~~~ 148 (326)
T 3d7r_A 84 MQVFRFNFRH----QIDKKILYIHGGFNALQPSPFHWRLLDKITLSTLYEVVLPIYPKTPEFHI-----------DDTFQ 148 (326)
T ss_dssp EEEEEEESTT----CCSSEEEEECCSTTTSCCCHHHHHHHHHHHHHHCSEEEEECCCCTTTSCH-----------HHHHH
T ss_pred EEEEEEeeCC----CCCeEEEEECCCcccCCCCHHHHHHHHHHHHHhCCEEEEEeCCCCCCCCc-----------hHHHH
Confidence 5667788862 5679999999987532 3445666667776 5699999999998654221 23478
Q ss_pred HHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCc----eeEEEEeCCccch
Q 003886 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNL 708 (789)
Q Consensus 654 D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~----~~a~v~~~pv~~~ 708 (789)
|+.+++++++++ ++.++|+|+|||+||++++.++.++|++ ++++|+.+|+.+.
T Consensus 149 d~~~~~~~l~~~--~~~~~i~l~G~S~GG~lAl~~a~~~~~~~~~~v~~lvl~~p~~~~ 205 (326)
T 3d7r_A 149 AIQRVYDQLVSE--VGHQNVVVMGDGSGGALALSFVQSLLDNQQPLPNKLYLISPILDA 205 (326)
T ss_dssp HHHHHHHHHHHH--HCGGGEEEEEETHHHHHHHHHHHHHHHTTCCCCSEEEEESCCCCT
T ss_pred HHHHHHHHHHhc--cCCCcEEEEEECHHHHHHHHHHHHHHhcCCCCCCeEEEECccccc
Confidence 999999999988 7889999999999999999999887766 9999999998765
|
| >2xt0_A Haloalkane dehalogenase; hydrolase, alpha-beta hydrolase fold; 1.90A {Plesiocystis pacifica} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=144.18 Aligned_cols=118 Identities=18% Similarity=0.191 Sum_probs=86.6
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHH
Q 003886 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (789)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~ 653 (789)
..++....-|. ...|.||++||.+.+ ...|......|++.||.|+++|+|| +|.+.... ......++
T Consensus 33 ~~l~y~~~G~~-----~~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~rvia~Dl~G---~G~S~~~~---~~~~~~~~ 99 (297)
T 2xt0_A 33 LRMHYVDEGPR-----DAEHTFLCLHGEPSW--SFLYRKMLPVFTAAGGRVVAPDLFG---FGRSDKPT---DDAVYTFG 99 (297)
T ss_dssp CCEEEEEESCT-----TCSCEEEEECCTTCC--GGGGTTTHHHHHHTTCEEEEECCTT---STTSCEES---CGGGCCHH
T ss_pred eEEEEEEccCC-----CCCCeEEEECCCCCc--ceeHHHHHHHHHhCCcEEEEeCCCC---CCCCCCCC---CcccCCHH
Confidence 67776554331 114789999997764 5677777889999999999999998 66654221 11123455
Q ss_pred HHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 654 D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
++.+.+..+++. ++.+++.|+||||||.+++.+|.++|++++++|+.++..
T Consensus 100 ~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~~ 150 (297)
T 2xt0_A 100 FHRRSLLAFLDA--LQLERVTLVCQDWGGILGLTLPVDRPQLVDRLIVMNTAL 150 (297)
T ss_dssp HHHHHHHHHHHH--HTCCSEEEEECHHHHHHHTTHHHHCTTSEEEEEEESCCC
T ss_pred HHHHHHHHHHHH--hCCCCEEEEEECchHHHHHHHHHhChHHhcEEEEECCCC
Confidence 665555555554 345789999999999999999999999999999998743
|
| >1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE; 2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=153.77 Aligned_cols=124 Identities=22% Similarity=0.239 Sum_probs=95.2
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCC-CchhhHHHHHHHH-HCCcEEEEEcCCCCCCCCchhhccCCC
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSV-SLSSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSLPG 645 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~-~~~~~~~~~~~la-~~Gy~V~~~d~rGs~G~G~~~~~~~~~ 645 (789)
+...+| .+.+.+| +. .++.|+||++|||++.. ....|......|+ +.||.|+++||||.+.+.
T Consensus 61 i~~~~g-~i~~~~y-~~----~~~~p~vv~~HGgg~~~g~~~~~~~~~~~la~~~g~~Vv~~dyrg~g~~~--------- 125 (311)
T 1jji_A 61 IKGRNG-DIRVRVY-QQ----KPDSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEHK--------- 125 (311)
T ss_dssp EEETTE-EEEEEEE-ES----SSSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTTSC---------
T ss_pred ecCCCC-cEEEEEE-cC----CCCceEEEEECCcccccCChhHhHHHHHHHHHHhCCEEEEecCCCCCCCC---------
Confidence 344455 7888888 42 45789999999987422 2346667778888 689999999999854321
Q ss_pred CCCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhCCCc----eeEEEEeCCccch
Q 003886 646 KVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNL 708 (789)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~p~~----~~a~v~~~pv~~~ 708 (789)
.....+|+.++++++.+.. .+|+++|+|+|||+||++++.++.+++++ ++++|+.+|+.+.
T Consensus 126 --~p~~~~d~~~~~~~l~~~~~~~~~d~~~i~l~G~S~GG~la~~~a~~~~~~~~~~~~~~vl~~p~~~~ 193 (311)
T 1jji_A 126 --FPAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNF 193 (311)
T ss_dssp --TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCCS
T ss_pred --CCCcHHHHHHHHHHHHhhHHHhCCCchhEEEEEeCHHHHHHHHHHHHHHhcCCCCceEEEEeCCccCC
Confidence 1234788999999988752 36778999999999999999999877665 9999999998875
|
| >1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP: c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=6.9e-14 Score=146.31 Aligned_cols=180 Identities=12% Similarity=0.000 Sum_probs=115.7
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc-----hhhHHHHHHHHHCC----cEEEEEcCCCCCCCCc
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-----SSYSKSLAFLSSVG----YSLLIVNYRGSLGFGE 637 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-----~~~~~~~~~la~~G----y~V~~~d~rGs~G~G~ 637 (789)
.+.+.++ .+.++++.|+++++.+++|+||++||+++.... ..+......|+++| |+|+++|++|+.+.+.
T Consensus 45 ~~~s~~~-~~~~~vy~P~~~~~~~~~Pvlv~lHG~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ivv~pd~~~~~~~~~ 123 (297)
T 1gkl_A 45 TYTGING-TKSLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNGGNCTAQ 123 (297)
T ss_dssp EEEETTE-EEEEEEEECTTCCTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHTTSSCCEEEEECCSCSTTCCTT
T ss_pred EEEcCCC-EEEEEEEeCCCCCCCCCCCEEEEECCCCCCcchhhcccchHHHHHHHHHHcCCCCCEEEEEecCcCCccchH
Confidence 4455555 899999999988777899999999998764321 11234556777764 9999999987433222
Q ss_pred hhhccCCCCCCcccHHHHHHHHHHHHHcCC------------CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 638 EALQSLPGKVGSQDVNDVLTAIDHVIDMGL------------ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 638 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~------------~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
.+ .....+| .+.++.++.. .|+++++|+|+|+||++++.++.++|++|+++++.+|.
T Consensus 124 ~~--------~~~~~~~---l~~~i~~~~~~~~~~~~~~~i~~d~~~~~i~G~S~GG~~al~~a~~~p~~f~~~v~~sg~ 192 (297)
T 1gkl_A 124 NF--------YQEFRQN---VIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGD 192 (297)
T ss_dssp TH--------HHHHHHT---HHHHHHHHSCSSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEESCC
T ss_pred HH--------HHHHHHH---HHHHHHHhCCccccccccccccCCccceEEEEECHHHHHHHHHHHhCchhhheeeEeccc
Confidence 11 1111233 3444444321 36788999999999999999999999999999999997
Q ss_pred cchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHC
Q 003886 706 CNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHI 785 (789)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l 785 (789)
..+... .. . .......+... ..+.....++++.+|++|.. ..++.+++++|
T Consensus 193 ~~~~~~---------~~-~--------------~~~~~~~~~~~---~~~~~~~~~l~~~~G~~D~~--~~~~~~l~~~L 243 (297)
T 1gkl_A 193 YWYGNS---------PQ-D--------------KANSIAEAINR---SGLSKREYFVFAATGSEDIA--YANMNPQIEAM 243 (297)
T ss_dssp CCBSSS---------HH-H--------------HHHHHHHHHHH---HTCCTTSCEEEEEEETTCTT--HHHHHHHHHHH
T ss_pred cccCCc---------cc-h--------------hhhHHHHHHhh---ccCCcCcEEEEEEeCCCccc--chhHHHHHHHH
Confidence 532100 00 0 00111111111 12333445677789999976 45788888887
Q ss_pred CC
Q 003886 786 PF 787 (789)
Q Consensus 786 ~~ 787 (789)
++
T Consensus 244 ~~ 245 (297)
T 1gkl_A 244 KA 245 (297)
T ss_dssp HT
T ss_pred HH
Confidence 64
|
| >3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase BPO-A2 and matrix...; protein design, bionanotechnology; 3.00A {Streptomyces aureofaciens} PDB: 4d9j_A | Back alignment and structure |
|---|
Probab=99.54 E-value=6.5e-14 Score=155.91 Aligned_cols=121 Identities=19% Similarity=0.233 Sum_probs=87.0
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
.+.+.+|..++.... +..|+||++||++.+ ...|......|+++||.|+++|+|| +|.+...
T Consensus 7 ~~~~~dG~~l~y~~~--------G~gp~VV~lHG~~~~--~~~~~~l~~~La~~Gy~Vi~~D~rG---~G~S~~~----- 68 (456)
T 3vdx_A 7 GQENSTSIDLYYEDH--------GTGVPVVLIHGFPLS--GHSWERQSAALLDAGYRVITYDRRG---FGQSSQP----- 68 (456)
T ss_dssp EEETTEEEEEEEEEE--------SSSEEEEEECCTTCC--GGGGTTHHHHHHHHTEEEEEECCTT---STTSCCC-----
T ss_pred cccccCCeEEEEEEe--------CCCCEEEEECCCCCc--HHHHHHHHHHHHHCCcEEEEECCCC---CCCCCCC-----
Confidence 345567777763322 145899999998764 4567777889999999999999998 4544321
Q ss_pred CCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC-CCceeEEEEeCCccc
Q 003886 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLCN 707 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~-p~~~~a~v~~~pv~~ 707 (789)
.....+++..+.+..+++. ++.++++|+|||+||++++.+++++ |++++++|+.+|...
T Consensus 69 ~~~~s~~~~a~dl~~~l~~--l~~~~v~LvGhS~GG~ia~~~aa~~~p~~v~~lVli~~~~~ 128 (456)
T 3vdx_A 69 TTGYDYDTFAADLNTVLET--LDLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEP 128 (456)
T ss_dssp SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEEGGGGHHHHHHHHHHCSSSEEEEEEESCCCS
T ss_pred CCCCCHHHHHHHHHHHHHH--hCCCCeEEEEECHHHHHHHHHHHhcchhheeEEEEeCCccc
Confidence 1123455555555544444 3567899999999999888888876 899999999998764
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.3e-12 Score=135.32 Aligned_cols=266 Identities=11% Similarity=0.057 Sum_probs=162.9
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (789)
++|||+.++... ...+.++++..... ...+...........+...+|+|||++|+.....+ .+.
T Consensus 59 ~~~~~~~l~~~~----------dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~ 122 (337)
T 1gxr_A 59 ISNPTRHVYTGG----------KGCVKVWDISHPGN-KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS-----TLS 122 (337)
T ss_dssp ECSSSSEEEEEC----------BSEEEEEETTSTTC-CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSS-----EEE
T ss_pred EecCCcEEEEcC----------CCeEEEEECCCCCc-eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCC-----cEE
Confidence 468998887642 23566666643322 11111100000114578899999999999876543 455
Q ss_pred Ee--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeC
Q 003886 184 LW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 261 (789)
Q Consensus 184 i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (789)
+| ..++........ ...+.+ ..+.|+||++.|+....+
T Consensus 123 ~~d~~~~~~~~~~~~~-~~~~~i------~~~~~~~~~~~l~~~~~d--------------------------------- 162 (337)
T 1gxr_A 123 IWDLAAPTPRIKAELT-SSAPAC------YALAISPDSKVCFSCCSD--------------------------------- 162 (337)
T ss_dssp EEECCCC--EEEEEEE-CSSSCE------EEEEECTTSSEEEEEETT---------------------------------
T ss_pred EEECCCCCcceeeecc-cCCCce------EEEEECCCCCEEEEEeCC---------------------------------
Confidence 55 233322222221 111122 689999999988876432
Q ss_pred CcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEe
Q 003886 262 DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 341 (789)
Q Consensus 262 d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d 341 (789)
..|.+||+.+++..... ......+..+.|+|||+. |+..+ ....|+++|
T Consensus 163 -----------g~v~~~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----l~~~~---------------~dg~i~~~d 211 (337)
T 1gxr_A 163 -----------GNIAVWDLHNQTLVRQF-QGHTDGASCIDISNDGTK----LWTGG---------------LDNTVRSWD 211 (337)
T ss_dssp -----------SCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSEEEEEE
T ss_pred -----------CcEEEEeCCCCceeeee-ecccCceEEEEECCCCCE----EEEEe---------------cCCcEEEEE
Confidence 46889999888765442 223446788999999987 77655 234688889
Q ss_pred cccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCccc
Q 003886 342 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE 421 (789)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~ 421 (789)
+ .+++..........+...+|||||+.|+..+.+. .|++||+.++....+..
T Consensus 212 ~-----------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-----------~i~~~~~~~~~~~~~~~ 263 (337)
T 1gxr_A 212 L-----------------REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESS-----------NVEVLHVNKPDKYQLHL 263 (337)
T ss_dssp T-----------------TTTEEEEEEECSSCEEEEEECTTSSEEEEEETTS-----------CEEEEETTSSCEEEECC
T ss_pred C-----------------CCCceEeeecCCCceEEEEECCCCCEEEEEcCCC-----------cEEEEECCCCCeEEEcC
Confidence 8 4444443334455678899999999998777543 58999987754321110
Q ss_pred ceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCE
Q 003886 422 KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDN 501 (789)
Q Consensus 422 ~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~ 501 (789)
. ...+..+.|+|||+.|+ ++..++ .|..+|+.+++...............++++++.
T Consensus 264 ~--------------------~~~v~~~~~~~~~~~l~-~~~~dg--~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 320 (337)
T 1gxr_A 264 H--------------------ESCVLSLKFAYCGKWFV-STGKDN--LLNAWRTPYGASIFQSKESSSVLSCDISVDDKY 320 (337)
T ss_dssp C--------------------SSCEEEEEECTTSSEEE-EEETTS--EEEEEETTTCCEEEEEECSSCEEEEEECTTSCE
T ss_pred C--------------------ccceeEEEECCCCCEEE-EecCCC--cEEEEECCCCeEEEEecCCCcEEEEEECCCCCE
Confidence 0 01244678999999664 444455 455567778877655444444555678888887
Q ss_pred EEEEEe
Q 003886 502 IIAVSS 507 (789)
Q Consensus 502 l~~~~s 507 (789)
|+....
T Consensus 321 l~~~~~ 326 (337)
T 1gxr_A 321 IVTGSG 326 (337)
T ss_dssp EEEEET
T ss_pred EEEecC
Confidence 665543
|
| >2qm0_A BES; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: SVY; 1.84A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-15 Score=153.68 Aligned_cols=185 Identities=15% Similarity=0.140 Sum_probs=120.9
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHH-HHCC---cEEEEEcCCCCCCCCc-----hhhcc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFL-SSVG---YSLLIVNYRGSLGFGE-----EALQS 642 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~l-a~~G---y~V~~~d~rGs~G~G~-----~~~~~ 642 (789)
.|.++..+++.|+++++.+++|+|+++||++.......+......+ ++.| ++|+.+|++++..++. ++...
T Consensus 28 ~g~~~~~~v~~P~~~~~~~~~Pvl~~lhG~~~~~~~~~~~~~~~~~~~~~g~~~~ivV~i~~~~~~~~~~~~r~~~~~~~ 107 (275)
T 2qm0_A 28 EGKEYQIHISKPKQPAPDSGYPVIYVLDGNAFFQTFHEAVKIQSVRAEKTGVSPAIIVGVGYPIEGAFSGEERCYDFTPS 107 (275)
T ss_dssp TCCEEEEEEECCSSCCCTTCEEEEEEESHHHHHHHHHHHHHHHGGGHHHHCCCCCEEEEEECSCSSSCCHHHHHHHHCSS
T ss_pred CCCEEEEEEECCCCCCCCCCccEEEEecChHHHHHHHHHHHHHhhcchhcCCCCeEEEEECCCCCCcCcccccccccCCC
Confidence 6788999999999887778999999999965311111222222222 3567 9999999987543321 11100
Q ss_pred C-----C--------CCCC-cccHHHHH--HHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 643 L-----P--------GKVG-SQDVNDVL--TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 643 ~-----~--------~~~~-~~~~~D~~--~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
. + ...+ ...+.+.+ +.+.++.++..+|+++++|+|||+||++++.++.++|++|+++++.+|..
T Consensus 108 ~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~l~~~i~~~~~~~~~~~~~~G~S~GG~~a~~~~~~~p~~f~~~~~~s~~~ 187 (275)
T 2qm0_A 108 VISKDAPLKPDGKPWPKTGGAHNFFTFIEEELKPQIEKNFEIDKGKQTLFGHXLGGLFALHILFTNLNAFQNYFISSPSI 187 (275)
T ss_dssp CCCC---------CCCCCCCHHHHHHHHHHTHHHHHHHHSCEEEEEEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCT
T ss_pred CccccCCccccCCcCCCCCChHHHHHHHHHHHHHHHHhhccCCCCCCEEEEecchhHHHHHHHHhCchhhceeEEeCcee
Confidence 0 0 0111 11233322 34455555545788999999999999999999999999999999999986
Q ss_pred chhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHC
Q 003886 707 NLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHI 785 (789)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l 785 (789)
.+.... +.. ..+.+.... ......+|++|+||+.|..++..++.+++++|
T Consensus 188 ~~~~~~-------------~~~-------------~~~~~~~~~---~~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~L 237 (275)
T 2qm0_A 188 WWNNKS-------------VLE-------------KEENLIIEL---NNAKFETGVFLTVGSLEREHMVVGANELSERL 237 (275)
T ss_dssp THHHHG-------------GGG-------------GTTHHHHHH---HTCSSCEEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred eeChHH-------------HHH-------------HHHHHHhhh---cccCCCceEEEEeCCcccchhhHHHHHHHHHH
Confidence 432110 000 000111100 13455689999999999999999999999998
|
| >2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas mendocina} | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-14 Score=146.01 Aligned_cols=148 Identities=16% Similarity=0.133 Sum_probs=110.3
Q ss_pred EEEEecCCCCC-CCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHH
Q 003886 578 AIFVSSSHKKD-CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVL 656 (789)
Q Consensus 578 ~~~~~P~~~~~-~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~ 656 (789)
+.++.|..... +++.|+||++||++++ ...|......|+++||.|+++|+||+. ...|+.
T Consensus 34 ~~~~~p~~~~~~g~~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~d~~~s~-----------------~~~~~~ 94 (258)
T 2fx5_A 34 CRIYRPRDLGQGGVRHPVILWGNGTGAG--PSTYAGLLSHWASHGFVVAAAETSNAG-----------------TGREML 94 (258)
T ss_dssp EEEEEESSTTGGGCCEEEEEEECCTTCC--GGGGHHHHHHHHHHTCEEEEECCSCCT-----------------TSHHHH
T ss_pred EEEEeCCCCcccCCCceEEEEECCCCCC--chhHHHHHHHHHhCCeEEEEecCCCCc-----------------cHHHHH
Confidence 67788864211 3478999999997764 567777888999999999999999630 123555
Q ss_pred HHHHHHHHc---------CCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhcc
Q 003886 657 TAIDHVIDM---------GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 727 (789)
Q Consensus 657 ~~i~~l~~~---------~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~ 727 (789)
.+++++.+. ..+|.++++|+|||+||++++.++ .+++++++|+.+|....
T Consensus 95 ~~~~~l~~~~~~~~~~~~~~~~~~~i~l~G~S~GG~~a~~~a--~~~~v~~~v~~~~~~~~------------------- 153 (258)
T 2fx5_A 95 ACLDYLVRENDTPYGTYSGKLNTGRVGTSGHSQGGGGSIMAG--QDTRVRTTAPIQPYTLG------------------- 153 (258)
T ss_dssp HHHHHHHHHHHSSSSTTTTTEEEEEEEEEEEEHHHHHHHHHT--TSTTCCEEEEEEECCSS-------------------
T ss_pred HHHHHHHhcccccccccccccCccceEEEEEChHHHHHHHhc--cCcCeEEEEEecCcccc-------------------
Confidence 666666543 236778999999999999999887 35689999998774320
Q ss_pred CccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHH-HHHHHHHC
Q 003886 728 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSN-GLQVIYHI 785 (789)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~-~~~l~~~l 785 (789)
.+. ....+.++++|+|++||++|..+|+.. +.++++..
T Consensus 154 ---------~~~-----------~~~~~~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~ 192 (258)
T 2fx5_A 154 ---------LGH-----------DSASQRRQQGPMFLMSGGGDTIAFPYLNAQPVYRRA 192 (258)
T ss_dssp ---------TTC-----------CGGGGGCCSSCEEEEEETTCSSSCHHHHTHHHHHHC
T ss_pred ---------ccc-----------chhhhccCCCCEEEEEcCCCcccCchhhHHHHHhcc
Confidence 000 012456788999999999999999986 88888874
|
| >3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase, hydrolase; 1.90A {Mycobacterium tuberculosis} PDB: 3e3a_A 3hys_A 3hzo_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.1e-14 Score=147.25 Aligned_cols=184 Identities=16% Similarity=0.222 Sum_probs=115.4
Q ss_pred CCcEEEEEcCCCCCCCchhhH-HHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~-~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (789)
+.|+||++||.+.+ ...|. .....|+++||.|+++|+|| +|.+... .....+++.+.+..+++. ++
T Consensus 42 ~~~~vv~lHG~~~~--~~~~~~~~~~~l~~~g~~vi~~D~~G---~G~s~~~------~~~~~~~~~~~~~~~l~~--l~ 108 (293)
T 3hss_A 42 TGDPVVFIAGRGGA--GRTWHPHQVPAFLAAGYRCITFDNRG---IGATENA------EGFTTQTMVADTAALIET--LD 108 (293)
T ss_dssp SSEEEEEECCTTCC--GGGGTTTTHHHHHHTTEEEEEECCTT---SGGGTTC------CSCCHHHHHHHHHHHHHH--HT
T ss_pred CCCEEEEECCCCCc--hhhcchhhhhhHhhcCCeEEEEccCC---CCCCCCc------ccCCHHHHHHHHHHHHHh--cC
Confidence 45889999997764 45565 46778889999999999998 4554321 123456666666655554 34
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhc------------CCCCC-cchhhhh-ccCccccccC
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG------------TTDIP-DWCYVES-YGSKGKDSFT 735 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~------------~~~~~-~~~~~~~-~~~~~~~~~~ 735 (789)
.+++.|+|||+||.+++.++.++|++++++|+.+|......... ....+ .+..... ........+.
T Consensus 109 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (293)
T 3hss_A 109 IAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRGRLDRARQFFNKAEAELYDSGVQLPPTYDARARLLENFSRKTLN 188 (293)
T ss_dssp CCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHSCHHHHT
T ss_pred CCcEEEEeeCccHHHHHHHHHHChHHHHhhheecccccCChhhhHHHHHHHHHHhhcccchhhHHHHHHHhhhccccccc
Confidence 57899999999999999999999999999999998754311100 00000 0000000 0000000000
Q ss_pred ---------------CCCChhhHHHHH----hcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 736 ---------------ESPSVEDLTRFH----SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 736 ---------------~~~~~~~~~~~~----~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
............ ..+....+.++++|+|+++|++|..+|++.+.++.+.+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~g~~D~~~~~~~~~~~~~~~~~ 259 (293)
T 3hss_A 189 DDVAVGDWIAMFSMWPIKSTPGLRCQLDCAPQTNRLPAYRNIAAPVLVIGFADDVVTPPYLGREVADALPN 259 (293)
T ss_dssp CHHHHHHHHHHHHHSCCCCCHHHHHHHTSSCSSCCHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHHSTT
T ss_pred ccccHHHHHHHHhhccccccHHHHhHhhhccccchHHHHhhCCCCEEEEEeCCCCCCCHHHHHHHHHHCCC
Confidence 000000000000 1122334678999999999999999999999999998865
|
| >2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.65A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-13 Score=139.63 Aligned_cols=119 Identities=14% Similarity=0.170 Sum_probs=89.5
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc-hhh-HHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSY-SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~-~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
.+|.++ .+|.|. . ++.|+||++|||++.... ..+ ......+++.||.|+++|||+.+.+ .+
T Consensus 12 ~~~~~~--~~y~p~---~-~~~p~iv~~HGGg~~~g~~~~~~~~~~~~l~~~g~~Vi~vdYrlaPe~--~~--------- 74 (274)
T 2qru_A 12 ANGATV--TIYPTT---T-EPTNYVVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYLLAPNT--KI--------- 74 (274)
T ss_dssp TTSCEE--EEECCS---S-SSCEEEEEECCSTTTSCCGGGCCHHHHHHHHTTTEEEEEECCCCTTTS--CH---------
T ss_pred cCCeeE--EEEcCC---C-CCCcEEEEEeCccccCCChhhchHHHHHHHHHCCCEEEEeCCCCCCCC--CC---------
Confidence 355555 467775 2 568999999999864332 233 3455677888999999999985432 11
Q ss_pred cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHH---hCCCceeEEEEeCCccc
Q 003886 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG---QAPDKFVAAAARNPLCN 707 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~---~~p~~~~a~v~~~pv~~ 707 (789)
...++|+.++++|+.++.. +.++|+|+|+|+||.+++.++. ..+.+++++++.+|..+
T Consensus 75 p~~~~D~~~al~~l~~~~~-~~~~i~l~G~SaGG~lA~~~a~~~~~~~~~~~~~vl~~~~~~ 135 (274)
T 2qru_A 75 DHILRTLTETFQLLNEEII-QNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTD 135 (274)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TTCCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCSC
T ss_pred cHHHHHHHHHHHHHHhccc-cCCcEEEEEECHHHHHHHHHHHHHhcCCCCceEEEEEccccc
Confidence 2348999999999998742 2789999999999999999887 35678999999988877
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-12 Score=137.59 Aligned_cols=240 Identities=12% Similarity=0.045 Sum_probs=151.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEec-CCCccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~-~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
.++...+||||+ +|+..+..+ .+.+| ..++....... ..+..+.| ..++|||||++|+..+.+
T Consensus 83 ~~v~~~~~s~d~-~l~~~s~dg-----~v~lWd~~~~~~~~~~~~~~~~H~~~V------~~v~~spdg~~l~sgs~d-- 148 (344)
T 4gqb_B 83 AGVADLTWVGER-GILVASDSG-----AVELWELDENETLIVSKFCKYEHDDIV------STVSVLSSGTQAVSGSKD-- 148 (344)
T ss_dssp SCEEEEEEETTT-EEEEEETTS-----EEEEEEECTTSSCEEEEEEEECCSSCE------EEEEECTTSSEEEEEETT--
T ss_pred CCEEEEEEeCCC-eEEEEECCC-----EEEEEeccCCCceeEeeccccCCCCCE------EEEEECCCCCEEEEEeCC--
Confidence 358889999996 555554433 45666 33443333322 12222334 789999999999876543
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003886 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
..|.+||+.+++..... ......+..+.|+||++.
T Consensus 149 ------------------------------------------~~i~iwd~~~~~~~~~~-~~h~~~V~~~~~~~~~~~-- 183 (344)
T 4gqb_B 149 ------------------------------------------ICIKVWDLAQQVVLSSY-RAHAAQVTCVAASPHKDS-- 183 (344)
T ss_dssp ------------------------------------------SCEEEEETTTTEEEEEE-CCCSSCEEEEEECSSCTT--
T ss_pred ------------------------------------------CeEEEEECCCCcEEEEE-cCcCCceEEEEecCCCCC--
Confidence 46889999998765441 223446788999999988
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCC--CCCccCcceecCCCCE-E
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTE--SISSAFFPRFSPDGKF-L 386 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~--~~~~~~~p~~SpDG~~-l 386 (789)
++.++. .+..|.++|+ .+++ ...+.. ........+|+|++.. |
T Consensus 184 --~l~s~s--------------~D~~v~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l 230 (344)
T 4gqb_B 184 --VFLSCS--------------EDNRILLWDT-----------------RCPKPASQIGCSAPGYLPTSLAWHPQQSEVF 230 (344)
T ss_dssp --EEEEEE--------------TTSCEEEEET-----------------TSSSCEEECC----CCCEEEEEECSSCTTEE
T ss_pred --ceeeec--------------cccccccccc-----------------cccceeeeeecceeeccceeeeecCCCCcce
Confidence 766552 2236888888 3333 344432 2334667899997654 4
Q ss_pred EEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCC
Q 003886 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (789)
Q Consensus 387 a~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (789)
+..+.+ ..|.+||+.+++......+. ...+..+.|+|||..+++++..++
T Consensus 231 ~sg~~d-----------g~v~~wd~~~~~~~~~~~~h-------------------~~~v~~v~fsp~g~~~lasgs~D~ 280 (344)
T 4gqb_B 231 VFGDEN-----------GTVSLVDTKSTSCVLSSAVH-------------------SQCVTGLVFSPHSVPFLASLSEDC 280 (344)
T ss_dssp EEEETT-----------SEEEEEESCC--CCEEEECC-------------------SSCEEEEEECSSSSCCEEEEETTS
T ss_pred EEeccC-----------CcEEEEECCCCcEEEEEcCC-------------------CCCEEEEEEccCCCeEEEEEeCCC
Confidence 444433 25899999876543211111 113446789999987777877777
Q ss_pred eEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEee
Q 003886 467 SQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (789)
Q Consensus 467 ~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~ 520 (789)
...|| |+.++++.++......+....|+|+++.++++++...+ |.+-++
T Consensus 281 ~i~vw--d~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~---v~~w~v 329 (344)
T 4gqb_B 281 SLAVL--DSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQ---VVHHVV 329 (344)
T ss_dssp CEEEE--CTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSC---EEEEEC
T ss_pred eEEEE--ECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCe---EEEEEC
Confidence 66665 88889887775544455566889999988888776554 444444
|
| >1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta hydrolase fold; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-13 Score=143.22 Aligned_cols=186 Identities=16% Similarity=0.249 Sum_probs=111.6
Q ss_pred cEEEEEcCCC-CCCCchhhHHHH-HHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 593 PLIVVLHGGP-HSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 593 P~vv~~HGg~-~~~~~~~~~~~~-~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
|.||++||.+ +......|.... ..|++ +|.|+++|+|| +|.+.... .....++++.+.+..+++. ++.
T Consensus 37 ~~vvllHG~~~~~~~~~~~~~~~~~~l~~-~~~vi~~D~~G---~G~S~~~~----~~~~~~~~~~~~l~~~l~~--l~~ 106 (289)
T 1u2e_A 37 ETVVLLHGSGPGATGWANFSRNIDPLVEA-GYRVILLDCPG---WGKSDSVV----NSGSRSDLNARILKSVVDQ--LDI 106 (289)
T ss_dssp SEEEEECCCSTTCCHHHHTTTTHHHHHHT-TCEEEEECCTT---STTSCCCC----CSSCHHHHHHHHHHHHHHH--TTC
T ss_pred ceEEEECCCCcccchhHHHHHhhhHHHhc-CCeEEEEcCCC---CCCCCCCC----ccccCHHHHHHHHHHHHHH--hCC
Confidence 4899999964 222234555555 56665 49999999998 55543211 1134567777777766665 455
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCC------------CCcchhhhhccCccccccCCCC
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD------------IPDWCYVESYGSKGKDSFTESP 738 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 738 (789)
+++.|+|||+||.+++.++.++|++++++|+.+|............ .+.+.....+............
T Consensus 107 ~~~~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (289)
T 1u2e_A 107 AKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLT 186 (289)
T ss_dssp CCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHTTSSCTTSCC
T ss_pred CceEEEEECHhHHHHHHHHHHCHHhhhEEEEECCCccccccccccchhhHHHHHHHHhcchHHHHHHHHHHhhcCcccCC
Confidence 7899999999999999999999999999999987542100000000 0000000000000000000000
Q ss_pred -------------ChhhHHHHH---------hcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 739 -------------SVEDLTRFH---------SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 739 -------------~~~~~~~~~---------~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
.......+. ..+....+.++++|+|+++|++|..+|++.+.++.+.+++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~~ 258 (289)
T 1u2e_A 187 DALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVPMDAGLRLLSGIAGS 258 (289)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHCSCCSCCCGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHhhcChhHHHHHHHHHHhccccccchhhHHhhcCCCeEEEeeCCCCccCHHHHHHHHhhCCCc
Confidence 000001010 01122356789999999999999999999999999988653
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.6e-13 Score=139.46 Aligned_cols=260 Identities=10% Similarity=0.076 Sum_probs=179.9
Q ss_pred CCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCC---------
Q 003886 106 GNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN--------- 176 (789)
Q Consensus 106 pdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~--------- 176 (789)
.||.+|.|+... ....|+.++. ++.+.++|+... +--++|+|++|+|+....+
T Consensus 23 ~~g~~iy~~n~~-------d~~~ly~~~~--dg~~~~~l~~~~---------~~~i~~~g~~Iyy~~~~~~~~~~~~~~~ 84 (302)
T 3s25_A 23 ESDGEVFFSNTN-------DNGRLYAMNI--DGSNIHKLSNDT---------AMYINADKNYVYYVRNNNQKITSQTFFS 84 (302)
T ss_dssp EETTEEEEEEGG-------GTTEEEEEET--TSCSCEEEEEEE---------EEEEEECSSEEEEEEECC------CCSS
T ss_pred EeCCEEEEEeCC-------CCceEEEEcC--CCCCCEEccCCc---------eeeEEEcCCEEEEEECCCCcccccceec
Confidence 688899887432 1347888764 555667775432 3457899999999987642
Q ss_pred -CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCC
Q 003886 177 -ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK 254 (789)
Q Consensus 177 -~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (789)
....|+.+. ++++..++... .+..|+|+|++|+|+.....
T Consensus 85 ~n~~~Iy~i~~dg~~~~~l~~~--------------~~~~~s~~g~~Iy~~~~~~~------------------------ 126 (302)
T 3s25_A 85 YDRNSLCRIKRNGHGSTVLDPD--------------PCIYASLIGNYIYYLHYDTQ------------------------ 126 (302)
T ss_dssp CCSEEEEEEETTSCCCEEEECS--------------CEEEEEEETTEEEEEEESSS------------------------
T ss_pred cCCCeEEEEeCCCCcceEeecC--------------CccEEEEeCCEEEEEeecCC------------------------
Confidence 134678888 44444444331 24579999999999852110
Q ss_pred CcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCC
Q 003886 255 GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 334 (789)
Q Consensus 255 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~ 334 (789)
....|+++++++...++|+ .... ..|+|+|+. |+|+.. ..
T Consensus 127 ----------------~~~~Iy~~~~dGs~~~~lt--~~~~----~~~~~~g~~----iy~t~~--------------g~ 166 (302)
T 3s25_A 127 ----------------TATSLYRIRIDGEEKKKIK--NHYL----FTCNTSDRY----FYYNNP--------------KN 166 (302)
T ss_dssp ----------------SCEEEEEEETTSCCCEEEE--SSCC----CCSEEETTE----EEEECT--------------TT
T ss_pred ----------------CCceEEEEECCCCCeEEEe--CCCc----eEeeEECCE----EEEEeC--------------CC
Confidence 3478999999988888883 3322 356899999 999873 12
Q ss_pred cceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 335 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 335 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
..||++++ +++..++|..+.. ..| ++|+|++|+|+.... ..+|++++++++
T Consensus 167 ~~Iy~~~l-----------------~g~~~~~l~~~~~--~~~-~~P~g~~iy~t~~~~---------~~~I~~~~ldG~ 217 (302)
T 3s25_A 167 GQLYRYDT-----------------ASQSEALFYDCNC--YKP-VVLDDTNVYYMDVNR---------DNAIVHVNINNP 217 (302)
T ss_dssp CCEEEEET-----------------TTTEEEEEECSCE--EEE-EEEETTEEEEEEGGG---------TTEEEEECSSSC
T ss_pred ceEEEEEC-----------------CCCCEEEEeCCCc--cce-eeecCCEEEEEEcCC---------CcEEEEEECCCC
Confidence 37999998 6777777765422 345 569999999987543 257999999987
Q ss_pred CCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEE
Q 003886 415 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSL 494 (789)
Q Consensus 415 ~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~ 494 (789)
..+.++... .+.|+|+|+.|||..... ...|+++++++...++|+... ...
T Consensus 218 ~~~~Lt~~~------------------------~~~~~~~g~~Iy~~~~~~-~~~i~~~~~DG~~r~~l~~~~----~~~ 268 (302)
T 3s25_A 218 NPVVLTEAN------------------------IEHYNVYGSLIFYQRGGD-NPALCVVKNDGTGFKELAKGE----FCN 268 (302)
T ss_dssp CCEECSCSC------------------------EEEEEEETTEEEEEECSS-SCEEEEEETTSCCCEEEEESC----EEE
T ss_pred CeEEEeCCC------------------------cceEEECCCEEEEEECCC-CcEEEEEECCCCccEEeeCCc----cce
Confidence 766554321 124789999998875443 378999999888888887653 236
Q ss_pred eeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 495 LTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 495 ~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
+++.+++|+++...... |++..+..
T Consensus 269 i~i~~d~Iy~td~~~~~---i~~~~~dG 293 (302)
T 3s25_A 269 INVTSQYVYFTDFVSNK---EYCTSTQN 293 (302)
T ss_dssp EEECSSEEEEEETTTCC---EEEEESSS
T ss_pred EEEeCCEEEEEECCCCe---EEEEECCC
Confidence 78899999998754432 77776543
|
| >1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 2.70A {Mycobacterium tuberculosis} SCOP: c.69.1.3 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-14 Score=151.38 Aligned_cols=204 Identities=13% Similarity=0.117 Sum_probs=124.0
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHH---HHHHHHCCcEEEEEcCCCCCCCCchhhcc-CCCCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS---LAFLSSVGYSLLIVNYRGSLGFGEEALQS-LPGKV 647 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~---~~~la~~Gy~V~~~d~rGs~G~G~~~~~~-~~~~~ 647 (789)
.+..+..+ +.|. .+++|+||++||++.......|... .+.+++.||.|+++|++++.+|....... ..+..
T Consensus 19 ~~~~i~v~-~~p~----~~~~p~vvllHG~~~~~~~~~w~~~~~~~~~~~~~~~~vv~p~~~~~~~~~~~~~~~~~~g~~ 93 (304)
T 1sfr_A 19 MGRDIKVQ-FQSG----GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSDWYQPACGKAGC 93 (304)
T ss_dssp TTEEEEEE-EECC----STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCTTCBCSSCEEETTEE
T ss_pred CCCceEEE-ECCC----CCCCCEEEEeCCCCCCCCcchhhcCCCHHHHHhcCCeEEEEECCCCCccccccCCcccccccc
Confidence 35667766 4453 2679999999998543334455443 35677889999999998765443211000 00000
Q ss_pred CcccHHHH--HHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcch-h-h
Q 003886 648 GSQDVNDV--LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC-Y-V 723 (789)
Q Consensus 648 ~~~~~~D~--~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~-~-~ 723 (789)
+....++. .+.+.++.++-.++.++++|+|+||||++++.++.++|++|+++|+.+|..++..... .... . .
T Consensus 94 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~~----~~~~~~~~ 169 (304)
T 1sfr_A 94 QTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQAMG----PTLIGLAM 169 (304)
T ss_dssp ECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTSTTH----HHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCCCCCCceEEEEECHHHHHHHHHHHhCccceeEEEEECCccCccccch----hhhhhHhh
Confidence 12233333 2344444443336778999999999999999999999999999999999876432100 0000 0 0
Q ss_pred hhccCccccccCCCCChhhHHHHHhcCccccCCCC---CCCEEEEEeCCCC--------------CCChHHHHHHHHHCC
Q 003886 724 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV---KTPTIFLLGAQDL--------------RVPVSNGLQVIYHIP 786 (789)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i---~~P~Lii~G~~D~--------------~vp~~~~~~l~~~l~ 786 (789)
...+....+.+.+.+. ...+...+|...+.++ ++|++|+||++|. .++..++.+++++|+
T Consensus 170 ~~~~~~~~~~~~g~~~---~~~~~~~~p~~~~~~l~~~~~pi~l~~G~~D~~~~~~~~~~~~~~e~~~~~~~~~~~~~L~ 246 (304)
T 1sfr_A 170 GDAGGYKASDMWGPKE---DPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYN 246 (304)
T ss_dssp HHTTSCCHHHHHCSTT---STHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccchHHhcCCcc---hhhhHhcCHHHHHHHhhhcCCeEEEEecCCCCccccccccccchhHHHHHHHHHHHHHHHH
Confidence 0000000000011111 1245666776655554 5899999999998 678899999999886
Q ss_pred C
Q 003886 787 F 787 (789)
Q Consensus 787 ~ 787 (789)
+
T Consensus 247 ~ 247 (304)
T 1sfr_A 247 A 247 (304)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfa transferase; 2.20A {Leptospira interrogans} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.54 E-value=9.8e-14 Score=149.62 Aligned_cols=130 Identities=14% Similarity=0.158 Sum_probs=88.3
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch-----------hhHHHHH---HHHHCCcEEEEEcCCCCCCCCc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----------SYSKSLA---FLSSVGYSLLIVNYRGSLGFGE 637 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-----------~~~~~~~---~la~~Gy~V~~~d~rGs~G~G~ 637 (789)
+|..++....-+. ...+.|+||++||.+.+.... .|...+. .|+++||.|+++|+||. ++|.
T Consensus 29 ~g~~l~y~~~g~~---~~~~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~vi~~D~~G~-~~G~ 104 (366)
T 2pl5_A 29 SPVVIAYETYGTL---SSSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIGG-CKGS 104 (366)
T ss_dssp SSEEEEEEEEECC---CTTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTC-SSSS
T ss_pred cCceeeEEeccCc---CCCCCceEEEecccCCcccccccccccccccchHHhhcCCcccccccccEEEEecCCCc-ccCC
Confidence 4566666555443 223468999999987764311 3444332 45578999999999983 1232
Q ss_pred hhhccCCCC--------CCcccHHHHHHHHHHHHHcCCCCCccE-EEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 638 EALQSLPGK--------VGSQDVNDVLTAIDHVIDMGLANPSKV-TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 638 ~~~~~~~~~--------~~~~~~~D~~~~i~~l~~~~~~d~~rv-~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
+........ .....++++.+.+..+++. ++.+++ .|+|||+||.+++.++.++|++++++|+.+|...
T Consensus 105 s~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 181 (366)
T 2pl5_A 105 SGPLSIHPETSTPYGSRFPFVSIQDMVKAQKLLVES--LGIEKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMASTAE 181 (366)
T ss_dssp SSTTSBCTTTSSBCGGGSCCCCHHHHHHHHHHHHHH--TTCSSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSB
T ss_pred CCCCCCCCCCCccccCCCCcccHHHHHHHHHHHHHH--cCCceEEEEEEeCccHHHHHHHHHhCcHhhhheeEeccCcc
Confidence 221110000 0124577877777777776 456788 8999999999999999999999999999998754
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.2e-12 Score=136.62 Aligned_cols=249 Identities=12% Similarity=0.120 Sum_probs=157.2
Q ss_pred ccEEEEeCCCCCeEEEEecCCC---CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPEN---ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~---~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
+...++|||||++|++...... ....++.++ .+++..+.+...... ..+.|+|||++|++....
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~----------~~~~~s~dg~~l~v~~~~-- 109 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKP----------FGATINNTTQTLWFGNTV-- 109 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCC----------CSEEEETTTTEEEEEETT--
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCc----------ceEEECCCCCEEEEEecC--
Confidence 3567899999999977664321 133566666 566666666654444 689999999987765332
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC--------CccceEEE
Q 003886 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS--------LSVGQVVW 302 (789)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~--------~~~~~~~w 302 (789)
...|+++|+++++.......... .....++|
T Consensus 110 -----------------------------------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (353)
T 3vgz_A 110 -----------------------------------------NSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVA 148 (353)
T ss_dssp -----------------------------------------TTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEE
T ss_pred -----------------------------------------CCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEE
Confidence 25799999998886443111111 12467899
Q ss_pred eeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCee-ecCCCCCccCcceecC
Q 003886 303 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTESISSAFFPRFSP 381 (789)
Q Consensus 303 SPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~Lt~~~~~~~~p~~Sp 381 (789)
+|||+. +++.... ....|+++|+ ++++.. .+...........|||
T Consensus 149 s~dg~~----l~~~~~~-------------~~~~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~s~ 194 (353)
T 3vgz_A 149 DDATNT----VYISGIG-------------KESVIWVVDG-----------------GNIKLKTAIQNTGKMSTGLALDS 194 (353)
T ss_dssp ETTTTE----EEEEEES-------------SSCEEEEEET-----------------TTTEEEEEECCCCTTCCCCEEET
T ss_pred CCCCCE----EEEEecC-------------CCceEEEEcC-----------------CCCceEEEecCCCCccceEEECC
Confidence 999997 6665522 1236999998 555544 3432334467889999
Q ss_pred CCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEE
Q 003886 382 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 461 (789)
Q Consensus 382 DG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~ 461 (789)
||++|++.... ..|+++|..+++... ... ...... . .....+.|+|||+.+|+.
T Consensus 195 dg~~l~~~~~~-----------~~i~~~d~~~~~~~~-------~~~---~~~~~~-~----~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 195 EGKRLYTTNAD-----------GELITIDTADNKILS-------RKK---LLDDGK-E----HFFINISLDTARQRAFIT 248 (353)
T ss_dssp TTTEEEEECTT-----------SEEEEEETTTTEEEE-------EEE---CCCSSS-C----CCEEEEEEETTTTEEEEE
T ss_pred CCCEEEEEcCC-----------CeEEEEECCCCeEEE-------EEE---cCCCCC-C----cccceEEECCCCCEEEEE
Confidence 99998776532 368999987754321 111 000000 0 012246899999988776
Q ss_pred EEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 462 SIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 462 ~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
.. +...|+.+|+.+++.......... ....++++|+.++++.... ..+.+++..+
T Consensus 249 ~~--~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~---~~v~~~d~~~ 303 (353)
T 3vgz_A 249 DS--KAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQA---GKVSVIDAKS 303 (353)
T ss_dssp ES--SSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTT---TEEEEEETTT
T ss_pred eC--CCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCC---CeEEEEECCC
Confidence 43 335688889988887654433322 3468899999877766443 3477777653
|
| >1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12 PDB: 1hl7_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.9e-14 Score=144.81 Aligned_cols=102 Identities=21% Similarity=0.286 Sum_probs=77.4
Q ss_pred cEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCcc
Q 003886 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (789)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (789)
|.||++||.+.+ ...|......|+++||.|+++|+|| +|.+.... ....++++.+.+..+++. ++.++
T Consensus 24 ~pvvllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G---~G~S~~~~-----~~~~~~~~~~dl~~~l~~--l~~~~ 91 (279)
T 1hkh_A 24 QPVVLIHGYPLD--GHSWERQTRELLAQGYRVITYDRRG---FGGSSKVN-----TGYDYDTFAADLHTVLET--LDLRD 91 (279)
T ss_dssp EEEEEECCTTCC--GGGGHHHHHHHHHTTEEEEEECCTT---STTSCCCS-----SCCSHHHHHHHHHHHHHH--HTCCS
T ss_pred CcEEEEcCCCch--hhHHhhhHHHHHhCCcEEEEeCCCC---CCCCCCCC-----CCCCHHHHHHHHHHHHHh--cCCCc
Confidence 459999997664 5678888889999999999999998 55543211 123355555555555444 34578
Q ss_pred EEEEEcCccHHHHHHHHHhCCC-ceeEEEEeCCcc
Q 003886 673 VTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLC 706 (789)
Q Consensus 673 v~l~G~S~GG~~a~~~~~~~p~-~~~a~v~~~pv~ 706 (789)
+.|+|||+||.+++.++.++|+ +++++|+.++..
T Consensus 92 ~~lvGhS~Gg~va~~~a~~~p~~~v~~lvl~~~~~ 126 (279)
T 1hkh_A 92 VVLVGFSMGTGELARYVARYGHERVAKLAFLASLE 126 (279)
T ss_dssp EEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCC
T ss_pred eEEEEeChhHHHHHHHHHHcCccceeeEEEEccCC
Confidence 9999999999999999999998 999999998743
|
| >1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A {Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A 1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A 2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=145.39 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=87.5
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHH
Q 003886 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (789)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~ 653 (789)
..++....-|. .+.|.||++||.+.+ ...|......|++.||.|+++|+|| +|.+.... ......++
T Consensus 34 ~~l~y~~~G~~-----~~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~rvia~Dl~G---~G~S~~~~---~~~~y~~~ 100 (310)
T 1b6g_A 34 LRAHYLDEGNS-----DAEDVFLCLHGEPTW--SYLYRKMIPVFAESGARVIAPDFFG---FGKSDKPV---DEEDYTFE 100 (310)
T ss_dssp CEEEEEEEECT-----TCSCEEEECCCTTCC--GGGGTTTHHHHHHTTCEEEEECCTT---STTSCEES---CGGGCCHH
T ss_pred eEEEEEEeCCC-----CCCCEEEEECCCCCc--hhhHHHHHHHHHhCCCeEEEeCCCC---CCCCCCCC---CcCCcCHH
Confidence 77776555432 114789999997764 5577777889999999999999998 66654321 11123466
Q ss_pred HHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 654 D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
++.+.+..+++. ++.+++.|+|||+||++++.+|.++|++++++|+.++..
T Consensus 101 ~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~rv~~Lvl~~~~~ 151 (310)
T 1b6g_A 101 FHRNFLLALIER--LDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNAXL 151 (310)
T ss_dssp HHHHHHHHHHHH--HTCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCC
T ss_pred HHHHHHHHHHHH--cCCCCEEEEEcChHHHHHHHHHHhChHhheEEEEecccc
Confidence 666655555554 345789999999999999999999999999999998743
|
| >3nwo_A PIP, proline iminopeptidase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, mycobac smegmatis; 1.90A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-13 Score=146.49 Aligned_cols=126 Identities=18% Similarity=0.252 Sum_probs=84.0
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHH-CCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
+|..++....-+.+ .+.+.+.||++||++++ ...|......|++ .||.|+++|+|| +|.+.... .......
T Consensus 36 ~g~~l~y~~~G~~~--~~~~g~plvllHG~~~~--~~~w~~~~~~l~~~~~~~Via~D~rG---~G~S~~~~-~~~~~~~ 107 (330)
T 3nwo_A 36 GDHETWVQVTTPEN--AQPHALPLIVLHGGPGM--AHNYVANIAALADETGRTVIHYDQVG---CGNSTHLP-DAPADFW 107 (330)
T ss_dssp TTEEEEEEEECCSS--CCTTCCCEEEECCTTTC--CSGGGGGGGGHHHHHTCCEEEECCTT---STTSCCCT-TSCGGGC
T ss_pred cCcEEEEEEecCcc--CCCCCCcEEEECCCCCC--chhHHHHHHHhccccCcEEEEECCCC---CCCCCCCC-CCccccc
Confidence 67778777766531 11112358889998775 3456555666765 699999999998 55543210 0111122
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
..+++.+.+..+++. ++.+++.|+|||+||++++.+|.++|++++++|+.++...
T Consensus 108 ~~~~~a~dl~~ll~~--lg~~~~~lvGhSmGG~va~~~A~~~P~~v~~lvl~~~~~~ 162 (330)
T 3nwo_A 108 TPQLFVDEFHAVCTA--LGIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAICNSPAS 162 (330)
T ss_dssp CHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHTCCTTEEEEEEESCCSB
T ss_pred cHHHHHHHHHHHHHH--cCCCceEEEecCHHHHHHHHHHHhCCccceEEEEecCCcc
Confidence 344444444444443 2457899999999999999999999999999999887543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.1e-13 Score=147.57 Aligned_cols=290 Identities=10% Similarity=-0.013 Sum_probs=174.1
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecC--CCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVP--QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~--~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
+..++||| ++.+++....+ + .+...+ .+++..+.+... ....+.+ ..+.|+|||+.++....+...
T Consensus 125 ~~~~~~s~-~~~~~~~~~~~-~--~i~~~d~~~g~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~~~s~~~d~~v- 193 (433)
T 3bws_A 125 PKSVRFID-NTRLAIPLLED-E--GMDVLDINSGQTVRLSPPEKYKKKLGFV------ETISIPEHNELWVSQMQANAV- 193 (433)
T ss_dssp BCCCEESS-SSEEEEEBTTS-S--SEEEEETTTCCEEEECCCHHHHTTCCEE------EEEEEGGGTEEEEEEGGGTEE-
T ss_pred ceEEEEeC-CCeEEEEeCCC-C--eEEEEECCCCeEeeecCcccccccCCce------eEEEEcCCCEEEEEECCCCEE-
Confidence 55788999 66666665432 1 244444 445554433321 1222223 689999999877665544322
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCc-cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGK-RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~-~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
..|+............+........|.++....+... ....|++||+.+++.... ......+..++|+|||+.
T Consensus 194 -~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~g~~--- 267 (433)
T 3bws_A 194 -HVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK--TDKIGLPRGLLLSKDGKE--- 267 (433)
T ss_dssp -EEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--CCCCSEEEEEEECTTSSE---
T ss_pred -EEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE--ecCCCCceEEEEcCCCCE---
Confidence 1233222221111222333344556788755554333 567899999999887665 444556788999999997
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEec
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
|++.+...... ...+..|+++|+ .+++.............++|+|||+.|++...
T Consensus 268 -l~~~~~~~~~~-------~~~dg~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~ 322 (433)
T 3bws_A 268 -LYIAQFSASNQ-------ESGGGRLGIYSM-----------------DKEKLIDTIGPPGNKRHIVSGNTENKIYVSDM 322 (433)
T ss_dssp -EEEEEEESCTT-------CSCCEEEEEEET-----------------TTTEEEEEEEEEECEEEEEECSSTTEEEEEET
T ss_pred -EEEEECCCCcc-------ccCCCeEEEEEC-----------------CCCcEEeeccCCCCcceEEECCCCCEEEEEec
Confidence 77766422110 012347899998 45554444333345677899999998877754
Q ss_pred CCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCe----
Q 003886 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS---- 467 (789)
Q Consensus 392 ~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~---- 467 (789)
.+ ..|++||+.+++... ... .. ..+..+.|+|||+.|++.....+.
T Consensus 323 ~~----------~~v~v~d~~~~~~~~-------~~~---~~----------~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 372 (433)
T 3bws_A 323 CC----------SKIEVYDLKEKKVQK-------SIP---VF----------DKPNTIALSPDGKYLYVSCRGPNHPTEG 372 (433)
T ss_dssp TT----------TEEEEEETTTTEEEE-------EEE---CS----------SSEEEEEECTTSSEEEEEECCCCCTTTC
T ss_pred CC----------CEEEEEECCCCcEEE-------Eec---CC----------CCCCeEEEcCCCCEEEEEecCCCccccc
Confidence 43 369999987644321 111 00 123467899999988776654332
Q ss_pred --------EEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEee
Q 003886 468 --------QVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (789)
Q Consensus 468 --------~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~ 520 (789)
..|+.+|+.+++...............++++|+.+++..+... .+.+.++
T Consensus 373 ~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~---~i~v~~~ 430 (433)
T 3bws_A 373 YLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDH---QIRVYRR 430 (433)
T ss_dssp TTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTT---EEEEEEE
T ss_pred cccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCC---eEEEEEe
Confidence 3799999999987766555444556688999998876654332 3555554
|
| >3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=5.4e-14 Score=160.66 Aligned_cols=120 Identities=20% Similarity=0.324 Sum_probs=88.2
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
+..+|..++....- +.|+||++||++++ ...|......|+++||.|+++|+|| +|.+... ....
T Consensus 243 ~~~dg~~l~~~~~g--------~~p~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~D~~G---~G~S~~~---~~~~ 306 (555)
T 3i28_A 243 TVKPRVRLHFVELG--------SGPAVCLCHGFPES--WYSWRYQIPALAQAGYRVLAMDMKG---YGESSAP---PEIE 306 (555)
T ss_dssp EEETTEEEEEEEEC--------SSSEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTT---STTSCCC---SCGG
T ss_pred EeCCCcEEEEEEcC--------CCCEEEEEeCCCCc--hhHHHHHHHHHHhCCCEEEEecCCC---CCCCCCC---CCcc
Confidence 33478777744331 45899999998764 5567778889999999999999998 5544321 1112
Q ss_pred cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
....+++.+.+..+++. ++.++++|+|||+||.+++.++.++|++++++|+.+|..
T Consensus 307 ~~~~~~~~~d~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 362 (555)
T 3i28_A 307 EYCMEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNTPF 362 (555)
T ss_dssp GGSHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred cccHHHHHHHHHHHHHH--cCCCcEEEEEecHHHHHHHHHHHhChHheeEEEEEccCC
Confidence 33355555555555554 355789999999999999999999999999999988753
|
| >3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold, hydrolase; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-13 Score=138.71 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=107.6
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHC-----CcEEEEEcCCCC------CCCCchhhccC----CCCCCcccH
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV-----GYSLLIVNYRGS------LGFGEEALQSL----PGKVGSQDV 652 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~-----Gy~V~~~d~rGs------~G~G~~~~~~~----~~~~~~~~~ 652 (789)
..+++|+||++||.+.+ ...|......|+.+ ||.|+++|.++. ++.+..+.... ........+
T Consensus 19 ~~~~~p~vv~lHG~g~~--~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 96 (239)
T 3u0v_A 19 AGRHSASLIFLHGSGDS--GQGLRMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGGISNVWFDRFKITNDCPEHLESI 96 (239)
T ss_dssp SSCCCEEEEEECCTTCC--HHHHHHHHHHHHTSCCCCSSEEEEEECCCEEECGGGTTCEEECSSCCSSSSSSSCCCHHHH
T ss_pred CCCCCcEEEEEecCCCc--hhhHHHHHHHHhhcccCCCceEEEeCCCCccccccCCCCccccceeccCCCcccccchhhH
Confidence 35678999999996653 55676677777765 699999998642 11111111100 001111234
Q ss_pred HHHHHHHHHHHHc---CCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCc
Q 003886 653 NDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSK 729 (789)
Q Consensus 653 ~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~ 729 (789)
+++.+.+..+++. ..+|.++++|+|||+||++++.++.++|++++++|+.+|..+....
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~~~~~v~~~~~~~~~~~------------------ 158 (239)
T 3u0v_A 97 DVMCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKASA------------------ 158 (239)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHHHCTTSSEEEEESCCCCTTCH------------------
T ss_pred HHHHHHHHHHHHHHHHhCCCcccEEEEEEChhhHHHHHHHHhCccccceEEEecCCCCchhH------------------
Confidence 4545555544432 3378999999999999999999999999999999999987642110
Q ss_pred cccccCCCCChhhHHHHHhcCccccCCCCCCC-EEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 730 GKDSFTESPSVEDLTRFHSKSPISHISKVKTP-TIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P-~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
...... .....+| +|++||++|..||++++.++++.|+
T Consensus 159 ------------~~~~~~-------~~~~~~pp~li~~G~~D~~v~~~~~~~~~~~l~ 197 (239)
T 3u0v_A 159 ------------VYQALQ-------KSNGVLPELFQCHGTADELVLHSWAEETNSMLK 197 (239)
T ss_dssp ------------HHHHHH-------HCCSCCCCEEEEEETTCSSSCHHHHHHHHHHHH
T ss_pred ------------HHHHHH-------hhccCCCCEEEEeeCCCCccCHHHHHHHHHHHH
Confidence 000010 1234556 9999999999999999999998875
|
| >3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.7e-14 Score=148.06 Aligned_cols=102 Identities=25% Similarity=0.331 Sum_probs=77.0
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.|+||++||.+.+ ...|......| ||.|+++|+|| +|.+... .......+++.+.+..+++. ++.+
T Consensus 81 ~~~vv~~hG~~~~--~~~~~~~~~~l---g~~Vi~~D~~G---~G~S~~~----~~~~~~~~~~a~dl~~~l~~--l~~~ 146 (330)
T 3p2m_A 81 APRVIFLHGGGQN--AHTWDTVIVGL---GEPALAVDLPG---HGHSAWR----EDGNYSPQLNSETLAPVLRE--LAPG 146 (330)
T ss_dssp CCSEEEECCTTCC--GGGGHHHHHHS---CCCEEEECCTT---STTSCCC----SSCBCCHHHHHHHHHHHHHH--SSTT
T ss_pred CCeEEEECCCCCc--cchHHHHHHHc---CCeEEEEcCCC---CCCCCCC----CCCCCCHHHHHHHHHHHHHH--hCCC
Confidence 4789999997764 44565554444 99999999998 4544311 11234566666666666665 4567
Q ss_pred cEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
++.|+|||+||.+++.++.++|++++++|+.+|...
T Consensus 147 ~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 182 (330)
T 3p2m_A 147 AEFVVGMSLGGLTAIRLAAMAPDLVGELVLVDVTPS 182 (330)
T ss_dssp CCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCHH
T ss_pred CcEEEEECHhHHHHHHHHHhChhhcceEEEEcCCCc
Confidence 899999999999999999999999999999998654
|
| >1uxo_A YDEN protein; hydrolase, A/B hydrolase, esterase, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.8A {Bacillus subtilis} SCOP: c.69.1.31 | Back alignment and structure |
|---|
Probab=99.51 E-value=8.1e-14 Score=135.56 Aligned_cols=149 Identities=16% Similarity=0.126 Sum_probs=104.6
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHH-HHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~-~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (789)
..|+||++||.+++.. ..|..... .|+++||.|+++|+|.+.. .+.+++.+.+..+++. +
T Consensus 3 g~p~vv~~HG~~~~~~-~~~~~~~~~~l~~~g~~v~~~d~~~~~~---------------~~~~~~~~~~~~~~~~--~- 63 (192)
T 1uxo_A 3 GTKQVYIIHGYRASST-NHWFPWLKKRLLADGVQADILNMPNPLQ---------------PRLEDWLDTLSLYQHT--L- 63 (192)
T ss_dssp -CCEEEEECCTTCCTT-STTHHHHHHHHHHTTCEEEEECCSCTTS---------------CCHHHHHHHHHTTGGG--C-
T ss_pred CCCEEEEEcCCCCCcc-hhHHHHHHHHHHhCCcEEEEecCCCCCC---------------CCHHHHHHHHHHHHHh--c-
Confidence 3588999999776522 15655554 6889999999999983211 1355666666555554 3
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCC--ceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHH
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPD--KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFH 747 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~--~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (789)
.+++.++|||+||.+++.++.++|+ +++++|+.+|...... .+... ..+...+. +
T Consensus 64 ~~~~~l~G~S~Gg~~a~~~a~~~~~~~~v~~~v~~~~~~~~~~--------~~~~~--------~~~~~~~~--~----- 120 (192)
T 1uxo_A 64 HENTYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSLP--------TLQML--------DEFTQGSF--D----- 120 (192)
T ss_dssp CTTEEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCCT--------TCGGG--------GGGTCSCC--C-----
T ss_pred cCCEEEEEeCccHHHHHHHHHHhcccCCccEEEEeccCCCccc--------cchhh--------hhhhhcCC--C-----
Confidence 5789999999999999999999999 9999999998754211 01000 01111110 0
Q ss_pred hcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHC
Q 003886 748 SKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHI 785 (789)
Q Consensus 748 ~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l 785 (789)
...+.++++|+|+++|++|..+|++.+.++++.+
T Consensus 121 ----~~~~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~ 154 (192)
T 1uxo_A 121 ----HQKIIESAKHRAVIASKDDQIVPFSFSKDLAQQI 154 (192)
T ss_dssp ----HHHHHHHEEEEEEEEETTCSSSCHHHHHHHHHHT
T ss_pred ----HHHHHhhcCCEEEEecCCCCcCCHHHHHHHHHhc
Confidence 1223456789999999999999999999999877
|
| >1j1i_A META cleavage compound hydrolase; carbazole degradation, META cleavage product hydrolase, histidine tagged protein, alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP: c.69.1.10 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-13 Score=141.86 Aligned_cols=196 Identities=16% Similarity=0.139 Sum_probs=115.6
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCC-CCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP-HSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~-~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
+|..++....- ..|.||++||.+ ++.....|......|++. |.|+++|+|| +|.+. .. . ...
T Consensus 24 ~g~~l~y~~~g--------~g~~vvllHG~~~~~~~~~~~~~~~~~L~~~-~~vi~~Dl~G---~G~S~-~~--~--~~~ 86 (296)
T 1j1i_A 24 GGVETRYLEAG--------KGQPVILIHGGGAGAESEGNWRNVIPILARH-YRVIAMDMLG---FGKTA-KP--D--IEY 86 (296)
T ss_dssp TTEEEEEEEEC--------CSSEEEEECCCSTTCCHHHHHTTTHHHHTTT-SEEEEECCTT---STTSC-CC--S--SCC
T ss_pred CCEEEEEEecC--------CCCeEEEECCCCCCcchHHHHHHHHHHHhhc-CEEEEECCCC---CCCCC-CC--C--CCC
Confidence 67766643221 236799999964 322334565566677655 9999999998 55543 11 1 123
Q ss_pred cHHHHHHHHHHHHHcCCCCC-ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhc-CCC----CCcchhhh
Q 003886 651 DVNDVLTAIDHVIDMGLANP-SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG-TTD----IPDWCYVE 724 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~-~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~-~~~----~~~~~~~~ 724 (789)
.+++..+.+..+++. +.. +++.|+|||+||.+++.++.++|++++++|+.+|......... ... .+.+....
T Consensus 87 ~~~~~~~dl~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (296)
T 1j1i_A 87 TQDRRIRHLHDFIKA--MNFDGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREGMV 164 (296)
T ss_dssp CHHHHHHHHHHHHHH--SCCSSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHHHHH
T ss_pred CHHHHHHHHHHHHHh--cCCCCCeEEEEEChhHHHHHHHHHhChHhhhEEEEECCCCCCCCCCchHHHHhcccCCchHHH
Confidence 456666655555554 334 7899999999999999999999999999999988642110000 000 00000000
Q ss_pred hccCccccccCCCCChhh-------------HHHHH---h--------cCccccCCCCCCCEEEEEeCCCCCCChHHHHH
Q 003886 725 SYGSKGKDSFTESPSVED-------------LTRFH---S--------KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780 (789)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~-------------~~~~~---~--------~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~ 780 (789)
.+....... ......+. ...+. . ......+.++++|+|+++|++|..+|++.+.+
T Consensus 165 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~Lii~G~~D~~~~~~~~~~ 243 (296)
T 1j1i_A 165 HLVKALTND-GFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGKDDKVVPVETAYK 243 (296)
T ss_dssp HHHHHHSCT-TCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEETTCSSSCHHHHHH
T ss_pred HHHHHhccC-cccccHHHHHHHHHHhhCcchhhHHHHHHHHHHhcccccccHHHhhcCCCCEEEEEECCCcccCHHHHHH
Confidence 000000000 00000000 00010 0 11223467899999999999999999999999
Q ss_pred HHHHCCC
Q 003886 781 VIYHIPF 787 (789)
Q Consensus 781 l~~~l~~ 787 (789)
+.+.+++
T Consensus 244 ~~~~~~~ 250 (296)
T 1j1i_A 244 FLDLIDD 250 (296)
T ss_dssp HHHHCTT
T ss_pred HHHHCCC
Confidence 9988864
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-12 Score=136.01 Aligned_cols=270 Identities=13% Similarity=0.069 Sum_probs=148.1
Q ss_pred eEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCC--CCCeEEEEec-CCceeEEEecCCCcccc
Q 003886 127 KFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN--ESPIQFELWS-QSQLEKEFHVPQTVHGS 203 (789)
Q Consensus 127 ~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~--~~~~~~~i~~-~~~~~~~~~~~~~~~g~ 203 (789)
..++++.++...++..+++.. .......++|||||++|++....++ +.-.+|.+.. +++...+........
T Consensus 27 ~~i~~~~~d~~~g~~~~~~~~----~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~-- 100 (361)
T 3scy_A 27 KGIYTFRFNEETGESLPLSDA----EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGA-- 100 (361)
T ss_dssp CEEEEEEEETTTCCEEEEEEE----ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSS--
T ss_pred CCEEEEEEeCCCCCEEEeecc----cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCC--
Confidence 456666565554544444322 1134566899999999988877522 3334455553 366665554432110
Q ss_pred ccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccC-
Q 003886 204 VYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS- 282 (789)
Q Consensus 204 v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~- 282 (789)
....+++ ||++|+.+... ...|.+|++..
T Consensus 101 -----~p~~~~~--dg~~l~~~~~~-------------------------------------------~~~v~~~~~~~~ 130 (361)
T 3scy_A 101 -----DPCYLTT--NGKNIVTANYS-------------------------------------------GGSITVFPIGQD 130 (361)
T ss_dssp -----CEEEEEE--CSSEEEEEETT-------------------------------------------TTEEEEEEBCTT
T ss_pred -----CcEEEEE--CCCEEEEEECC-------------------------------------------CCEEEEEEeCCC
Confidence 0024455 88877765321 24577777753
Q ss_pred CceEecc---CCCC---------CCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 283 GEVQAVK---GIPK---------SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 283 g~~~~l~---~~~~---------~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
+.+..+. ...+ ...+..++|+|||+. |+++... ...|+++++..
T Consensus 131 g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~----l~~~~~~--------------~~~v~v~~~~~------ 186 (361)
T 3scy_A 131 GALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY----LLADDLG--------------TDQIHKFNINP------ 186 (361)
T ss_dssp SCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE----EEEEETT--------------TTEEEEEEECT------
T ss_pred CcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE----EEEEeCC--------------CCEEEEEEEcC------
Confidence 2222110 0000 112356899999997 7665421 12455565521
Q ss_pred hhhhhcCCCCCC----C-e-------eecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCC
Q 003886 351 ELELKESSSEDL----P-V-------VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 418 (789)
Q Consensus 351 ~~~~~~~~~~~~----~-~-------~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~ 418 (789)
.++ + . ............++|||||++|++..... ..|.+||+.++....
T Consensus 187 ---------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~----------~~v~v~~~~~g~~~~ 247 (361)
T 3scy_A 187 ---------NANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG----------GTVIAFRYADGMLDE 247 (361)
T ss_dssp ---------TCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT----------CEEEEEEEETTEEEE
T ss_pred ---------CCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC----------CeEEEEEecCCceEE
Confidence 222 1 1 11122233456789999999887666332 358888887543211
Q ss_pred cccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe-CCeEEEEEEECCCCcEEEecC--CCCCceeEEe
Q 003886 419 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW-GSSQVIISVNVSSGELLRITP--AESNFSWSLL 495 (789)
Q Consensus 419 ~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~-~~~~~l~~~dl~tg~~~~lt~--~~~~~~~~~~ 495 (789)
+..+...+. .+. ....+.|+|||++||++... .+...+|.++..+|+.+.+.. .........|
T Consensus 248 -------~~~~~~~~~--~~~-----~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~ 313 (361)
T 3scy_A 248 -------IQTVAADTV--NAQ-----GSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFII 313 (361)
T ss_dssp -------EEEEESCSS--CCC-----CEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEE
T ss_pred -------eEEEecCCC--CCC-----CcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEE
Confidence 111111111 011 12367899999988776655 567788888777887655432 1222344689
Q ss_pred eecCCEEEEEEeCC
Q 003886 496 TLDGDNIIAVSSSP 509 (789)
Q Consensus 496 s~dg~~l~~~~ss~ 509 (789)
++||++|++.....
T Consensus 314 spdg~~l~~~~~~~ 327 (361)
T 3scy_A 314 TPNGKYLLVACRDT 327 (361)
T ss_dssp CTTSCEEEEEETTT
T ss_pred CCCCCEEEEEECCC
Confidence 99999887766443
|
| >4fhz_A Phospholipase/carboxylesterase; alpha/beta hydrolase superfamily, central beta-STR sheet, flanked alpha helices, hydrolase; 2.01A {Rhodobacter sphaeroides} PDB: 4ftw_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-14 Score=147.82 Aligned_cols=165 Identities=17% Similarity=0.180 Sum_probs=112.5
Q ss_pred EEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHC--CcEEEEEcCC---CCCCCCchhhcc--CCCCCCcc-
Q 003886 579 IFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYR---GSLGFGEEALQS--LPGKVGSQ- 650 (789)
Q Consensus 579 ~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~--Gy~V~~~d~r---Gs~G~G~~~~~~--~~~~~~~~- 650 (789)
+...|. .+++++|+||++||.+. ....|....+.|+.+ ++.+++++-+ ...|.|..|... ........
T Consensus 55 y~~~p~--~~~~~~plVI~LHG~G~--~~~~~~~~~~~l~~~~~~~~~v~P~Ap~~~~~~~~G~~Wfd~~~~~~~~~~~~ 130 (285)
T 4fhz_A 55 FGRRGA--APGEATSLVVFLHGYGA--DGADLLGLAEPLAPHLPGTAFVAPDAPEPCRANGFGFQWFPIPWLDGSSETAA 130 (285)
T ss_dssp EEEEES--CTTCCSEEEEEECCTTB--CHHHHHTTHHHHGGGSTTEEEEEECCSEECTTSSSCEESSCCHHHHCCCHHHH
T ss_pred eecCCC--CCCCCCcEEEEEcCCCC--CHHHHHHHHHHHHHhCCCeEEEecCCCcccccCCCcccccccccccCcccchh
Confidence 344454 26788999999999554 345565556667653 8899998843 123345443210 00000011
Q ss_pred ------cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhh
Q 003886 651 ------DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 724 (789)
Q Consensus 651 ------~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~ 724 (789)
...++.+.++.++++..+|++||+|+|+|+||++++.++.++|++|+++|+.++....
T Consensus 131 ~~~~~~~~~~l~~~i~~~~~~~~id~~ri~l~GfS~Gg~~a~~~a~~~p~~~a~vv~~sG~l~~---------------- 194 (285)
T 4fhz_A 131 AEGMAAAARDLDAFLDERLAEEGLPPEALALVGFSQGTMMALHVAPRRAEEIAGIVGFSGRLLA---------------- 194 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEETHHHHHHHHHHHHSSSCCSEEEEESCCCSC----------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEeCHHHHHHHHHHHhCcccCceEEEeecCccC----------------
Confidence 1345556666666666699999999999999999999999999999999988774210
Q ss_pred hccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 725 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.+... ...+.++|+|++||++|.+||++++.++++.|++
T Consensus 195 ---------------~~~~~---------~~~~~~~Pvl~~hG~~D~~Vp~~~~~~~~~~L~~ 233 (285)
T 4fhz_A 195 ---------------PERLA---------EEARSKPPVLLVHGDADPVVPFADMSLAGEALAE 233 (285)
T ss_dssp ---------------HHHHH---------HHCCCCCCEEEEEETTCSSSCTHHHHHHHHHHHH
T ss_pred ---------------chhhh---------hhhhhcCcccceeeCCCCCcCHHHHHHHHHHHHH
Confidence 01100 1123467999999999999999999999998864
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-12 Score=136.23 Aligned_cols=259 Identities=10% Similarity=0.032 Sum_probs=145.3
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (789)
++|||+++++.... ...+.+++++...++...+...+.. ......+|||||++|++....+ +.-.+|.
T Consensus 45 ~spdg~~l~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~-~~i~~~d 112 (343)
T 1ri6_A 45 VSPDKRYLYVGVRP--------EFRVLAYRIAPDDGALTFAAESALP---GSLTHISTDHQGQFVFVGSYNA-GNVSVTR 112 (343)
T ss_dssp ECTTSSEEEEEETT--------TTEEEEEEECTTTCCEEEEEEEECS---SCCSEEEECTTSSEEEEEETTT-TEEEEEE
T ss_pred ECCCCCEEEEeecC--------CCeEEEEEecCCCCceeeccccccC---CCCcEEEEcCCCCEEEEEecCC-CeEEEEE
Confidence 46999988665321 1355666664333333333211110 2466789999999998776533 2222333
Q ss_pred EecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCc
Q 003886 184 LWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW 263 (789)
Q Consensus 184 i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 263 (789)
+. .+...+....... +.. ...+.|||||++|+....
T Consensus 113 ~~-~~~~~~~~~~~~~-~~~------~~~~~~s~dg~~l~~~~~------------------------------------ 148 (343)
T 1ri6_A 113 LE-DGLPVGVVDVVEG-LDG------CHSANISPDNRTLWVPAL------------------------------------ 148 (343)
T ss_dssp EE-TTEEEEEEEEECC-CTT------BCCCEECTTSSEEEEEEG------------------------------------
T ss_pred CC-CCccccccccccC-CCC------ceEEEECCCCCEEEEecC------------------------------------
Confidence 32 3332222222111 111 268999999998876532
Q ss_pred ccccCCccCceEEEEEccC-CceEecc----CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceE
Q 003886 264 GETYAGKRQPSLFVININS-GEVQAVK----GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (789)
Q Consensus 264 g~~~~~~~~~~l~v~d~~~-g~~~~l~----~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~ 338 (789)
....|++||+.+ ++...+. .......+..++|+|||+. |+++... ...|+
T Consensus 149 -------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~----l~~~~~~--------------~~~i~ 203 (343)
T 1ri6_A 149 -------KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQY----AYCVNEL--------------NSSVD 203 (343)
T ss_dssp -------GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSE----EEEEETT--------------TTEEE
T ss_pred -------CCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCE----EEEEeCC--------------CCEEE
Confidence 125689999887 7654221 0222335567899999997 6666421 22577
Q ss_pred EEecccccchhhhhhhhcCCCCCCCee---e---cCCC---CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEe
Q 003886 339 AVRVSLYKSEASELELKESSSEDLPVV---N---LTES---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 409 (789)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~---~---Lt~~---~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~ 409 (789)
++++.. .+++.+ . +... ......++|||||++|++....+ ..|.+|
T Consensus 204 ~~~~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~----------~~i~v~ 258 (343)
T 1ri6_A 204 VWELKD---------------PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA----------SLITVF 258 (343)
T ss_dssp EEESSC---------------TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT----------TEEEEE
T ss_pred EEEecC---------------CCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCC----------CEEEEE
Confidence 777621 122221 1 1111 11234589999999886554322 368888
Q ss_pred ecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003886 410 DWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (789)
Q Consensus 410 d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt 484 (789)
|+...... ...+...... ..+..+.|+|||+.|++.....+...+|.+|..+|+.+.+.
T Consensus 259 d~~~~~~~------~~~~~~~~~~----------~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 317 (343)
T 1ri6_A 259 SVSEDGSV------LSKEGFQPTE----------TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKG 317 (343)
T ss_dssp EECTTSCC------EEEEEEEECS----------SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEE
T ss_pred EEcCCCCc------eEEeeeecCC----------CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEcc
Confidence 88632111 0011111100 12456789999998877665678888999999888876653
|
| >2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B- hydrolase fold, acyltransferase, acetyl coenzyme A, antibiotic biosynthesis; HET: COA; 2.2A {Acremonium chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.5e-14 Score=157.00 Aligned_cols=114 Identities=23% Similarity=0.316 Sum_probs=81.0
Q ss_pred CCcEEEEEcCCCCCCCchh-hHHHHH---HHHHCCcEEEEEcCCCCCCCCchhhccC-C--CC---C----CcccHHHHH
Q 003886 591 CDPLIVVLHGGPHSVSLSS-YSKSLA---FLSSVGYSLLIVNYRGSLGFGEEALQSL-P--GK---V----GSQDVNDVL 656 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~-~~~~~~---~la~~Gy~V~~~d~rGs~G~G~~~~~~~-~--~~---~----~~~~~~D~~ 656 (789)
+.|+||++||.+++..... |..... .|++.||.|+++|+||+ |+|.+..... + +. + ....++|+.
T Consensus 108 ~~p~vvllHG~~~~~~~~~~w~~~~~~~~~L~~~~~~Vi~~D~~G~-~~G~S~~~~~~~~~~~~~~~~~~f~~~t~~~~a 186 (444)
T 2vat_A 108 RDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGS-PFGSAGPCSPDPDAEGQRPYGAKFPRTTIRDDV 186 (444)
T ss_dssp SCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTC-SSSSSSTTSBCTTTC--CBCGGGCCCCCHHHHH
T ss_pred CCCeEEEECCCCcccchhhHHHHhcCccchhhccCCEEEEecCCCC-CCCCCCCCCCCcccccccccccccccccHHHHH
Confidence 4689999999877643321 444332 46678999999999984 3454432110 0 00 1 124577777
Q ss_pred HHHHHHHHcCCCCCcc-EEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 657 TAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 657 ~~i~~l~~~~~~d~~r-v~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
+.+..+++. ++.++ ++|+|||+||++++.++.++|++++++|+.++...
T Consensus 187 ~dl~~ll~~--l~~~~~~~lvGhSmGG~ial~~A~~~p~~v~~lVli~~~~~ 236 (444)
T 2vat_A 187 RIHRQVLDR--LGVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATSCR 236 (444)
T ss_dssp HHHHHHHHH--HTCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCCSB
T ss_pred HHHHHHHHh--cCCccceEEEEECHHHHHHHHHHHhChHhhheEEEEecccc
Confidence 777777765 34567 99999999999999999999999999999998654
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-12 Score=150.37 Aligned_cols=264 Identities=18% Similarity=0.131 Sum_probs=164.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
..+...+|||||+.|+.....+ .+.+| ..++..+.+.. ....+ ..+.|+|||+.|+....+....
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~-----~i~~w~~~~~~~~~~~~---~~~~v------~~~~~s~~g~~l~~~~~dg~v~ 369 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDK-----TVKLWNRNGQHLQTLTG---HSSSV------WGVAFSPDGQTIASASDDKTVK 369 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEETTSCEEEEECC---CSSCE------EEEEECTTSSEEEEEETTSEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCC-----eEEEEeCCCCeeEEEeC---CCCCE------EEEEECCCCCEEEEEeCCCEEE
Confidence 4577889999999999876553 45677 33333222221 11122 6899999999999877654322
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (789)
.|+. ..........+........|++|.....++..+..|.+||..+.....+ ......+..++|+||++.
T Consensus 370 --~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~--~~~~~~v~~~~~s~d~~~---- 440 (577)
T 2ymu_A 370 --LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVWGVAFSPDDQT---- 440 (577)
T ss_dssp --EEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEE--ECCSSCEEEEEECTTSSE----
T ss_pred --EEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEe--cCCCCCeEEEEECCCCCE----
Confidence 2221 1111111222333344556788855555556678899999766555555 233446778999999997
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
|+..+. +..|.++|+ .+.....+..+...+...+|||||+.|+..+.+
T Consensus 441 l~~~~~---------------d~~v~~w~~-----------------~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d 488 (577)
T 2ymu_A 441 IASASD---------------DKTVKLWNR-----------------NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 488 (577)
T ss_dssp EEEEET---------------TSEEEEEET-----------------TSCEEEEEECCSSCEEEEEECTTSCEEEEEETT
T ss_pred EEEEcC---------------CCEEEEEEC-----------------CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCC
Confidence 776652 235777886 555667777777778889999999999877654
Q ss_pred CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (789)
. .|.+||..+.....+. + +...+..+.|+|||+.| +++..++...||
T Consensus 489 ~-----------~i~iw~~~~~~~~~~~-~-------------------h~~~v~~l~~s~dg~~l-~s~~~dg~v~lw- 535 (577)
T 2ymu_A 489 K-----------TVKLWNRNGQLLQTLT-G-------------------HSSSVRGVAFSPDGQTI-ASASDDKTVKLW- 535 (577)
T ss_dssp S-----------EEEEEETTSCEEEEEE-C-------------------CSSCEEEEEECTTSSCE-EEEETTSEEEEE-
T ss_pred C-----------EEEEEcCCCCEEEEEe-C-------------------CCCCEEEEEEcCCCCEE-EEEECcCEEEEE-
Confidence 3 5888985431111110 0 11134567899999965 556666655555
Q ss_pred EECCCCcEEEecCCCCCceeEEeeecCCEEEEEE
Q 003886 473 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 473 ~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ 506 (789)
|..+..+..+......+....|++||+.|+...
T Consensus 536 -d~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~ 568 (577)
T 2ymu_A 536 -NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 568 (577)
T ss_dssp -CTTSCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred -eCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 654444444544344455568899998876543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.7e-13 Score=157.19 Aligned_cols=254 Identities=11% Similarity=0.099 Sum_probs=158.1
Q ss_pred CCCCCeEEEEecCCCCC-CeEEEEec---CCc---eeEEEecCC--CccccccCCCcccceeec-CCCCEEEEEeecCCC
Q 003886 162 SPSGSKLLVVRNPENES-PIQFELWS---QSQ---LEKEFHVPQ--TVHGSVYADGWFEGISWN-SDETLIAYVAEEPSP 231 (789)
Q Consensus 162 SPdG~~la~~~~~~~~~-~~~~~i~~---~~~---~~~~~~~~~--~~~g~v~~d~~~~~~~wS-pDg~~la~~~~~~~~ 231 (789)
.|+|.+++|.+..+++. ..++.... .+. .+.+++... ..|+. -....++|| |||++|||+.....
T Consensus 123 ~~~g~~~yy~~~~~g~~~~vl~r~~~~~~~~~~~~~~vlld~n~~a~~~~~----~~~~~~~~S~PDG~~lAy~~~~~G- 197 (751)
T 2xe4_A 123 YVYGKYRYYTREVKGKPYKIYCRVFTDKEPGDVAAEEVIIDVNQVAEGKAF----CDVMEVKPAPPEHDLVAFSVDMSG- 197 (751)
T ss_dssp EEETTEEEEEEECTTCCSCEEEEEETTSCTTCTTTCEEEEEHHHHTTTCSC----CEEEEEEECTTTTCEEEEEEESSS-
T ss_pred eEECCEEEEEEECCCCceeEEEEEcCCCCCCCCcCCEEEechhHhccCCCe----EEEeeeEecCCCCCEEEEEEeCCC-
Confidence 37999999998876443 33444444 443 344444311 11111 023679999 99999999876431
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCC-ceEeccCCCCCCccceEEEeeCCCCCc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG-EVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g-~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
.....|+++|+++| +. +. ..-......++|||||+.
T Consensus 198 --------------------------------------~~~~~l~v~dl~~g~~~--l~-~~~~~~~~~~~WspDg~~-- 234 (751)
T 2xe4_A 198 --------------------------------------NEVYTIEFKRISDPSQT--IA-DKVSGTNGEIVWGPDHTS-- 234 (751)
T ss_dssp --------------------------------------SSCEEEEEEETTCTTCC--CC-CCEEEECSCCEECSSTTE--
T ss_pred --------------------------------------CceEEEEEEECCCCCEe--CC-ccccCceeeEEEecCCCE--
Confidence 12357999999998 62 21 000112468999999999
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe--eecC--CCCCccCcceecCCCCEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLT--ESISSAFFPRFSPDGKFL 386 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~Lt--~~~~~~~~p~~SpDG~~l 386 (789)
|+|+..... .++..||++++ .++.. +.+. ........+.|||||++|
T Consensus 235 --l~y~~~d~~----------~~~~~v~~~~l-----------------gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l 285 (751)
T 2xe4_A 235 --LFYVTKDET----------LRENKVWRHVM-----------------GKLQSEDVCLYEEHNPLFSAFMYKAADTNTL 285 (751)
T ss_dssp --EEEEEECTT----------CCEEEEEEEET-----------------TSCGGGCEEEEECCCTTCEEEEEECTTSSEE
T ss_pred --EEEEEECCC----------CCCCEEEEEEC-----------------CCCchhcEEEEecCCCceEEEEEECCCCCEE
Confidence 999975321 12347999998 44322 2332 222345678999999999
Q ss_pred EEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccC---CCEEEEEEE
Q 003886 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD---GCTMLLSSI 463 (789)
Q Consensus 387 a~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~D---g~~l~~~~~ 463 (789)
+|.+... ...+||++|+.++.... .+..+... .....|++| |+.|+|.++
T Consensus 286 ~~~~~~~--------~~~~l~~~d~~~~~~~~------~~~~l~~~-------------~~~~~~s~~~~~g~~l~~~t~ 338 (751)
T 2xe4_A 286 CIGSQSP--------ETAEVHLLDLRKGNAHN------TLEIVRPR-------------EKGVRYDVQMHGTSHLVILTN 338 (751)
T ss_dssp EEEEECS--------SCEEEEEEESSSCTTCC------CEEESSCC-------------CTTCCEEEEEETTTEEEEEEC
T ss_pred EEEecCC--------CCceEEEEECCCCCCCc------eeEEeecC-------------CCCceEEEeeeeCCEEEEEeC
Confidence 9998653 35689999998752111 00111100 113346666 889999987
Q ss_pred eC--CeEEEEEEECCC-CcEEE-ecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEee
Q 003886 464 WG--SSQVIISVNVSS-GELLR-ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (789)
Q Consensus 464 ~~--~~~~l~~~dl~t-g~~~~-lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~ 520 (789)
.+ +..+||.+++++ ++.+. +...........++.+++.|++...... ...|+++++
T Consensus 339 ~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g-~~~l~~~dl 398 (751)
T 2xe4_A 339 EGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAG-LTRIWTMMA 398 (751)
T ss_dssp TTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETT-EEEEEEEEC
T ss_pred CCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCC-EEEEEEEec
Confidence 65 678999999976 45555 5444433344567777888887775443 456888875
|
| >3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610, O-acetyltransfera bacillus anthracis; HET: MSE; 2.44A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.5e-14 Score=152.02 Aligned_cols=116 Identities=14% Similarity=0.145 Sum_probs=80.1
Q ss_pred CCCcEEEEEcCCCCCCCc----------h-hhHHHH---HHHHHCCcEEEEEcCCCCC--------CCCchhhccCCC--
Q 003886 590 SCDPLIVVLHGGPHSVSL----------S-SYSKSL---AFLSSVGYSLLIVNYRGSL--------GFGEEALQSLPG-- 645 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~----------~-~~~~~~---~~la~~Gy~V~~~d~rGs~--------G~G~~~~~~~~~-- 645 (789)
.+.|+||++||.+++... . .|.... ..|.+.||.|+++|+||.+ ++|.+......+
T Consensus 40 ~~~p~vll~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~G~S~G~~~g~~g~~~~~p~~~~~ 119 (377)
T 3i1i_A 40 ERSNVILICHYFSATSHAAGKYTAHDEESGWWDGLIGPGKAIDTNQYFVICTDNLCNVQVKNPHVITTGPKSINPKTGDE 119 (377)
T ss_dssp TCCCEEEEECCTTCCSCCSSCSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTTCSCTTSTTCCCCSTTSBCTTTSSB
T ss_pred CCCCEEEEeccccCcchhccccccccccccchhhhcCCCCccccccEEEEEecccccccccCCCcccCCCCCCCCCCCCc
Confidence 456999999998776332 0 133333 4666889999999999742 122211110001
Q ss_pred ---CCCcccHHHHHHHHHHHHHcCCCCCccEE-EEEcCccHHHHHHHHHhCCCceeEEEE-eCCccc
Q 003886 646 ---KVGSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAA-RNPLCN 707 (789)
Q Consensus 646 ---~~~~~~~~D~~~~i~~l~~~~~~d~~rv~-l~G~S~GG~~a~~~~~~~p~~~~a~v~-~~pv~~ 707 (789)
.+....++|+.+.+..+++. ++.+++. |+|||+||.+++.+|.++|++++++|+ .++...
T Consensus 120 ~~~~~~~~~~~~~~~d~~~~l~~--l~~~~~~ilvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 184 (377)
T 3i1i_A 120 YAMDFPVFTFLDVARMQCELIKD--MGIARLHAVMGPSAGGMIAQQWAVHYPHMVERMIGVITNPQN 184 (377)
T ss_dssp CGGGSCCCCHHHHHHHHHHHHHH--TTCCCBSEEEEETHHHHHHHHHHHHCTTTBSEEEEESCCSBC
T ss_pred ccCCCCCCCHHHHHHHHHHHHHH--cCCCcEeeEEeeCHhHHHHHHHHHHChHHHHHhcccCcCCCc
Confidence 01234678888888888876 4567886 999999999999999999999999999 665443
|
| >2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid indole alkaloids, PNAE, hydrolase, serine esterase; HET: CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.8e-13 Score=137.49 Aligned_cols=105 Identities=20% Similarity=0.233 Sum_probs=79.2
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (789)
+..|.||++||.+++ ...|......|+++||.|+++|+|| +|.+.... .....++++.+.+..+++. ++
T Consensus 8 ~~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~~via~Dl~G---~G~S~~~~----~~~~~~~~~a~dl~~~l~~--l~ 76 (264)
T 2wfl_A 8 KQQKHFVLVHGGCLG--AWIWYKLKPLLESAGHKVTAVDLSA---AGINPRRL----DEIHTFRDYSEPLMEVMAS--IP 76 (264)
T ss_dssp -CCCEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTT---STTCSCCG----GGCCSHHHHHHHHHHHHHH--SC
T ss_pred CCCCeEEEECCCccc--cchHHHHHHHHHhCCCEEEEeecCC---CCCCCCCc----ccccCHHHHHHHHHHHHHH--hC
Confidence 456889999997754 4567778889999999999999998 55543210 0113456666655555554 22
Q ss_pred -CccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 670 -PSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 670 -~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
.+++.|+||||||++++.++.++|++++++|+.++.
T Consensus 77 ~~~~~~lvGhSmGG~va~~~a~~~p~~v~~lvl~~~~ 113 (264)
T 2wfl_A 77 PDEKVVLLGHSFGGMSLGLAMETYPEKISVAVFMSAM 113 (264)
T ss_dssp TTCCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSC
T ss_pred CCCCeEEEEeChHHHHHHHHHHhChhhhceeEEEeec
Confidence 468999999999999999999999999999998864
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-11 Score=131.70 Aligned_cols=282 Identities=11% Similarity=0.012 Sum_probs=173.8
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
.++|||+.++... ..+.+.++++.. +.....+.... ..+..++|+|||++|+.....+ .+
T Consensus 39 ~~s~~~~~l~~~~---------~dg~i~vwd~~~-~~~~~~~~~h~-----~~v~~~~~~~~~~~l~s~~~dg-----~i 98 (369)
T 3zwl_B 39 KYNKEGDLLFSCS---------KDSSASVWYSLN-GERLGTLDGHT-----GTIWSIDVDCFTKYCVTGSADY-----SI 98 (369)
T ss_dssp EECTTSCEEEEEE---------SSSCEEEEETTT-CCEEEEECCCS-----SCEEEEEECTTSSEEEEEETTT-----EE
T ss_pred EEcCCCCEEEEEe---------CCCEEEEEeCCC-chhhhhhhhcC-----CcEEEEEEcCCCCEEEEEeCCC-----eE
Confidence 4578998876543 233566666532 22223333222 4588999999999999876654 45
Q ss_pred EEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceee
Q 003886 183 ELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (789)
Q Consensus 183 ~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (789)
.+| ..++....+.....+ ..+.|+|||+.|+....+..
T Consensus 99 ~iwd~~~~~~~~~~~~~~~v----------~~~~~~~~~~~l~~~~~~~~------------------------------ 138 (369)
T 3zwl_B 99 KLWDVSNGQCVATWKSPVPV----------KRVEFSPCGNYFLAILDNVM------------------------------ 138 (369)
T ss_dssp EEEETTTCCEEEEEECSSCE----------EEEEECTTSSEEEEEECCBT------------------------------
T ss_pred EEEECCCCcEEEEeecCCCe----------EEEEEccCCCEEEEecCCcc------------------------------
Confidence 666 345555555433333 78999999999988755410
Q ss_pred CCcccccCCccCceEEEEEccCCce------------EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeee
Q 003886 261 EDWGETYAGKRQPSLFVININSGEV------------QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK 328 (789)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~------------~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~ 328 (789)
.....|.+||+.++.. ..+........+..++|+|||+. |+..+
T Consensus 139 ---------~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~----------- 194 (369)
T 3zwl_B 139 ---------KNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKY----IIAGH----------- 194 (369)
T ss_dssp ---------TBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCE----EEEEE-----------
T ss_pred ---------CCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCE----EEEEc-----------
Confidence 0235677777765532 11211122226778899999997 66654
Q ss_pred eeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEE
Q 003886 329 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 408 (789)
Q Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~ 408 (789)
....|+++|+.. .......+..+...+....|+|||+.|+..+.+. .|++
T Consensus 195 ----~dg~i~i~d~~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------~i~v 244 (369)
T 3zwl_B 195 ----KDGKISKYDVSN---------------NYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDT-----------NSFL 244 (369)
T ss_dssp ----TTSEEEEEETTT---------------TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTS-----------EEEE
T ss_pred ----CCCEEEEEECCC---------------CcEeEEEEecCCCceeEEEECCCCCEEEEecCCc-----------eEEE
Confidence 233688888720 1234456666677788999999999998776543 5999
Q ss_pred eecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCC-----------eEEEEEEECCC
Q 003886 409 IDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS-----------SQVIISVNVSS 477 (789)
Q Consensus 409 ~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~-----------~~~l~~~dl~t 477 (789)
||+.++....... .. ..+..+.|+|+++.+++....++ ...+..+|+.+
T Consensus 245 ~d~~~~~~~~~~~----------~~----------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~ 304 (369)
T 3zwl_B 245 VDVSTLQVLKKYE----------TD----------CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF 304 (369)
T ss_dssp EETTTCCEEEEEE----------CS----------SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTT
T ss_pred EECCCCceeeeec----------CC----------CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCC
Confidence 9987754321110 00 12346689999998876654331 22577788888
Q ss_pred CcEEEecCC-CCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 478 GELLRITPA-ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 478 g~~~~lt~~-~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
++....... ...+....|+++++.|+....+ ..+.+.++..
T Consensus 305 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d----g~v~iw~~~~ 346 (369)
T 3zwl_B 305 EEEIGRVQGHFGPLNTVAISPQGTSYASGGED----GFIRLHHFEK 346 (369)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETT----SEEEEEEECH
T ss_pred CcchhheecccCcEEEEEECCCCCEEEEEcCC----CeEEEEECcc
Confidence 876655443 3345556888988876655432 2366666643
|
| >3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A {Escherichia coli} PDB: 3bf8_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-13 Score=139.73 Aligned_cols=100 Identities=22% Similarity=0.229 Sum_probs=73.4
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
..|.||++||.+.+ ...|......|++. |.|+++|+|| +|.+.... ...++++.+.+..+++. ++.
T Consensus 15 ~~~~vvllHG~~~~--~~~w~~~~~~L~~~-~~via~Dl~G---~G~S~~~~------~~~~~~~a~dl~~~l~~--l~~ 80 (255)
T 3bf7_A 15 NNSPIVLVHGLFGS--LDNLGVLARDLVND-HNIIQVDVRN---HGLSPREP------VMNYPAMAQDLVDTLDA--LQI 80 (255)
T ss_dssp CCCCEEEECCTTCC--TTTTHHHHHHHTTT-SCEEEECCTT---STTSCCCS------CCCHHHHHHHHHHHHHH--HTC
T ss_pred CCCCEEEEcCCccc--HhHHHHHHHHHHhh-CcEEEecCCC---CCCCCCCC------CcCHHHHHHHHHHHHHH--cCC
Confidence 45779999997764 45677777788765 9999999998 55553211 12344444444444443 234
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCC
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 704 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~p 704 (789)
+++.|+|||+||.+++.++.++|++++++|+.++
T Consensus 81 ~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~ 114 (255)
T 3bf7_A 81 DKATFIGHSMGGKAVMALTALAPDRIDKLVAIDI 114 (255)
T ss_dssp SCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESC
T ss_pred CCeeEEeeCccHHHHHHHHHhCcHhhccEEEEcC
Confidence 6899999999999999999999999999998753
|
| >2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein, BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics, PSI-2; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.8e-14 Score=136.96 Aligned_cols=147 Identities=12% Similarity=0.070 Sum_probs=99.3
Q ss_pred CCcEEEEEcCCCCCCC-chhhHH-HHHHHHHC-CcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCC
Q 003886 591 CDPLIVVLHGGPHSVS-LSSYSK-SLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~-~~~~~~-~~~~la~~-Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (789)
+.|+||++||++++.. ...|.. ....|+++ ||.|+++|+||..+ . +....++.+++.
T Consensus 3 ~~p~vv~lHG~~~~~~~~~~~~~~~~~~l~~~~g~~vi~~d~~g~~~---------------~---~~~~~~~~~~~~-- 62 (194)
T 2qs9_A 3 SPSKAVIVPGNGGGDVTTHGWYGWVKKELEKIPGFQCLAKNMPDPIT---------------A---RESIWLPFMETE-- 62 (194)
T ss_dssp CCCEEEEECCSSSSCTTTSTTHHHHHHHHTTSTTCCEEECCCSSTTT---------------C---CHHHHHHHHHHT--
T ss_pred CCCEEEEECCCCCCCcccchHHHHHHHHHhhccCceEEEeeCCCCCc---------------c---cHHHHHHHHHHH--
Confidence 5689999999877532 234544 56778877 99999999997311 0 123344445554
Q ss_pred CCC-ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHH
Q 003886 668 ANP-SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRF 746 (789)
Q Consensus 668 ~d~-~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (789)
++. +++.|+|||+||++++.++.++| ++++|+.+|...... .. .... ..+...+. .
T Consensus 63 l~~~~~~~lvG~S~Gg~ia~~~a~~~p--v~~lvl~~~~~~~~~--------~~--~~~~-----~~~~~~~~--~---- 119 (194)
T 2qs9_A 63 LHCDEKTIIIGHSSGAIAAMRYAETHR--VYAIVLVSAYTSDLG--------DE--NERA-----SGYFTRPW--Q---- 119 (194)
T ss_dssp SCCCTTEEEEEETHHHHHHHHHHHHSC--CSEEEEESCCSSCTT--------CH--HHHH-----TSTTSSCC--C----
T ss_pred hCcCCCEEEEEcCcHHHHHHHHHHhCC--CCEEEEEcCCccccc--------hh--hhHH-----Hhhhcccc--c----
Confidence 333 78999999999999999999998 999999998754210 00 0000 00100110 0
Q ss_pred HhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHC
Q 003886 747 HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHI 785 (789)
Q Consensus 747 ~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l 785 (789)
...+.++.+|+|+++|++|..+|++.+.++++.+
T Consensus 120 -----~~~~~~~~~p~lii~G~~D~~vp~~~~~~~~~~~ 153 (194)
T 2qs9_A 120 -----WEKIKANCPYIVQFGSTDDPFLPWKEQQEVADRL 153 (194)
T ss_dssp -----HHHHHHHCSEEEEEEETTCSSSCHHHHHHHHHHH
T ss_pred -----HHHHHhhCCCEEEEEeCCCCcCCHHHHHHHHHhc
Confidence 1112335679999999999999999999998876
|
| >2qvb_A Haloalkane dehalogenase 3; RV2579, alpha-beta hydrolase protei structural genomics consortium, TBSGC, hydrolase; 1.19A {Mycobacterium tuberculosis} PDB: 2o2i_A 2o2h_A | Back alignment and structure |
|---|
Probab=99.49 E-value=6e-14 Score=146.03 Aligned_cols=120 Identities=18% Similarity=0.119 Sum_probs=85.7
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
.+|..++....- +.|+||++||.+.+ ...|......|++ +|.|+++|+|| +|.+..... ......
T Consensus 15 ~~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G---~G~S~~~~~-~~~~~~ 79 (297)
T 2qvb_A 15 IAGKRMAYIDEG--------KGDAIVFQHGNPTS--SYLWRNIMPHLEG-LGRLVACDLIG---MGASDKLSP-SGPDRY 79 (297)
T ss_dssp ETTEEEEEEEES--------SSSEEEEECCTTCC--GGGGTTTGGGGTT-SSEEEEECCTT---STTSCCCSS-CSTTSS
T ss_pred ECCEEEEEEecC--------CCCeEEEECCCCch--HHHHHHHHHHHhh-cCeEEEEcCCC---CCCCCCCCC-ccccCc
Confidence 367777654432 24899999997764 4456656666765 49999999998 554432111 011224
Q ss_pred cHHHHHHHHHHHHHcCCCCC-ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 651 DVNDVLTAIDHVIDMGLANP-SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~-~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
..+++.+.+..+++. ++. +++.++|||+||.+++.++.++|++++++|+.+|...
T Consensus 80 ~~~~~~~~~~~~l~~--~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~ 135 (297)
T 2qvb_A 80 SYGEQRDFLFALWDA--LDLGDHVVLVLHDWGSALGFDWANQHRDRVQGIAFMEAIVT 135 (297)
T ss_dssp CHHHHHHHHHHHHHH--TTCCSCEEEEEEEHHHHHHHHHHHHSGGGEEEEEEEEECCS
T ss_pred CHHHHHHHHHHHHHH--cCCCCceEEEEeCchHHHHHHHHHhChHhhheeeEeccccC
Confidence 566766666666665 455 7899999999999999999999999999999998653
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-12 Score=135.82 Aligned_cols=269 Identities=13% Similarity=0.082 Sum_probs=164.4
Q ss_pred cccEEEEeCCC----CCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEee
Q 003886 154 TGASAVVPSPS----GSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (789)
Q Consensus 154 ~~~~~~~~SPd----G~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~ 227 (789)
..+...+|+|+ |+.|+..+..+ ...+|+ .++......+ .+..+.| ..+.|+|++..++..+.
T Consensus 33 ~~V~~v~~~~~~~~~~~~l~tgs~D~-----~v~vW~~~~~~~~~~~~l-~gh~~~v------~~~~~~~~~~~l~s~s~ 100 (321)
T 3ow8_A 33 DAIWSVAWGTNKKENSETVVTGSLDD-----LVKVWKWRDERLDLQWSL-EGHQLGV------VSVDISHTLPIAASSSL 100 (321)
T ss_dssp SCEEEEEEC-------CEEEEEETTS-----CEEEEEEETTEEEEEEEE-CCCSSCE------EEEEECSSSSEEEEEET
T ss_pred CcEEEEEEecCCCCCCCEEEEEcCCC-----CEEEEECCCCCeeeeeee-ccCCCCE------EEEEECCCCCEEEEEeC
Confidence 45889999986 55677665543 355662 2332222222 2222333 78999999999888776
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003886 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (789)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (789)
+.... .|+.....................|.++....+++.....|.+||+.+++..... ......+..++|+|||+
T Consensus 101 D~~i~--lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~-~~~~~~v~~~~~spdg~ 177 (321)
T 3ow8_A 101 DAHIR--LWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL-DTRGKFILSIAYSPDGK 177 (321)
T ss_dssp TSEEE--EEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE-ECSSSCEEEEEECTTSS
T ss_pred CCcEE--EEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe-cCCCceEEEEEECCCCC
Confidence 65432 3432222211112222233335678888666666667789999999988765431 22334567899999999
Q ss_pred CCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC-CeeecCCCCCccCcceecCCCCEE
Q 003886 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFL 386 (789)
Q Consensus 308 ~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~SpDG~~l 386 (789)
. |+..+ .+..|.++|+ .++ ....+..+...+...+|||||+.|
T Consensus 178 ~----lasg~---------------~dg~i~iwd~-----------------~~~~~~~~~~~h~~~v~~l~~spd~~~l 221 (321)
T 3ow8_A 178 Y----LASGA---------------IDGIINIFDI-----------------ATGKLLHTLEGHAMPIRSLTFSPDSQLL 221 (321)
T ss_dssp E----EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECCCSSCCCEEEECTTSCEE
T ss_pred E----EEEEc---------------CCCeEEEEEC-----------------CCCcEEEEEcccCCceeEEEEcCCCCEE
Confidence 7 77665 2336888898 444 345666677778999999999998
Q ss_pred EEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCC
Q 003886 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (789)
Q Consensus 387 a~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (789)
+..+.+. .|.+||+.++.......+ ....+..+.|+|||+.| +++..++
T Consensus 222 ~s~s~dg-----------~i~iwd~~~~~~~~~~~~-------------------h~~~v~~~~~sp~~~~l-~s~s~D~ 270 (321)
T 3ow8_A 222 VTASDDG-----------YIKIYDVQHANLAGTLSG-------------------HASWVLNVAFCPDDTHF-VSSSSDK 270 (321)
T ss_dssp EEECTTS-----------CEEEEETTTCCEEEEECC-------------------CSSCEEEEEECTTSSEE-EEEETTS
T ss_pred EEEcCCC-----------eEEEEECCCcceeEEEcC-------------------CCCceEEEEECCCCCEE-EEEeCCC
Confidence 8776543 489999876543211000 01123467899999865 5556566
Q ss_pred eEEEEEEECCCCcEEEecCC-CCCceeEEeeecCCEEEEEE
Q 003886 467 SQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 467 ~~~l~~~dl~tg~~~~lt~~-~~~~~~~~~s~dg~~l~~~~ 506 (789)
...|| |+.+++....... ...+....|+++++.|+...
T Consensus 271 ~v~iw--d~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~ 309 (321)
T 3ow8_A 271 SVKVW--DVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVG 309 (321)
T ss_dssp CEEEE--ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cEEEE--eCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEe
Confidence 55555 7777776554333 33455567888888766444
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-12 Score=139.87 Aligned_cols=239 Identities=15% Similarity=0.128 Sum_probs=141.3
Q ss_pred hhcccceeEEEEEEeecCCCCccceeecCCcc---eecccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEE
Q 003886 120 LLANKRKKFMLSTVISKENENSVTFQWAPFPV---EMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEF 194 (789)
Q Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~---~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~ 194 (789)
+........+.++.+.........+....+.. ....+...+|||||++||..+...+ ..+.+|+ .++....+
T Consensus 97 l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d---~~i~iwd~~~~~~~~~~ 173 (365)
T 4h5i_A 97 ITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVP---AIMRIIDPSDLTEKFEI 173 (365)
T ss_dssp HHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSS---CEEEEEETTTTEEEEEE
T ss_pred EEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCC---CEEEEeECCCCcEEEEe
Confidence 44444555666666644433222222111100 0022567899999999998764322 3567773 44443333
Q ss_pred ecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCce
Q 003886 195 HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPS 274 (789)
Q Consensus 195 ~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~ 274 (789)
... +.| ..++|||||+.|+..+. ..
T Consensus 174 ~~~----~~V------~~v~fspdg~~l~s~s~---------------------------------------------~~ 198 (365)
T 4h5i_A 174 ETR----GEV------KDLHFSTDGKVVAYITG---------------------------------------------SS 198 (365)
T ss_dssp ECS----SCC------CEEEECTTSSEEEEECS---------------------------------------------SC
T ss_pred CCC----Cce------EEEEEccCCceEEeccc---------------------------------------------ee
Confidence 322 233 78999999999988642 23
Q ss_pred EEEEEccCCceEe-ccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhh
Q 003886 275 LFVININSGEVQA-VKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE 353 (789)
Q Consensus 275 l~v~d~~~g~~~~-l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~ 353 (789)
+.+|+..+++... .........+..++|+|||+. ++..+.... ....++.+++....
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~----l~~~s~d~~-----------~~~~i~~~~~~~~~------- 256 (365)
T 4h5i_A 199 LEVISTVTGSCIARKTDFDKNWSLSKINFIADDTV----LIAASLKKG-----------KGIVLTKISIKSGN------- 256 (365)
T ss_dssp EEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEE----EEEEEESSS-----------CCEEEEEEEEETTE-------
T ss_pred EEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCE----EEEEecCCc-----------ceeEEeecccccce-------
Confidence 5667766665432 211223345778999999998 777664322 11246666652100
Q ss_pred hhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCc-ccceeeEEeeeec
Q 003886 354 LKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS-LEKIVDVIPVVQC 432 (789)
Q Consensus 354 ~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~-t~~~~~v~~~~~~ 432 (789)
........+..+...+...+|||||++||..+.+. .|.+||+.+++.... ..+.
T Consensus 257 -----~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~-----------~V~iwd~~~~~~~~~~~~gH--------- 311 (365)
T 4h5i_A 257 -----TSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN-----------SIALVKLKDLSMSKIFKQAH--------- 311 (365)
T ss_dssp -----EEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS-----------CEEEEETTTTEEEEEETTSS---------
T ss_pred -----ecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC-----------EEEEEECCCCcEEEEecCcc---------
Confidence 00112334556666788899999999999887653 489999887553211 1111
Q ss_pred cCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003886 433 AEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (789)
Q Consensus 433 ~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~d 474 (789)
...+..++|||||++| ++++.++..+||.+.
T Consensus 312 ----------~~~V~~v~fSpdg~~l-aS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 312 ----------SFAITEVTISPDSTYV-ASVSAANTIHIIKLP 342 (365)
T ss_dssp ----------SSCEEEEEECTTSCEE-EEEETTSEEEEEECC
T ss_pred ----------cCCEEEEEECCCCCEE-EEEeCCCeEEEEEcC
Confidence 1234577899999855 677888888888764
|
| >1qlw_A Esterase; anisotropic refinement, atomic resolution, alpha/beta hydrolase; 1.09A {Alcaligenes SP} SCOP: c.69.1.15 PDB: 2wkw_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.1e-13 Score=143.69 Aligned_cols=160 Identities=11% Similarity=0.131 Sum_probs=108.1
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhH-------HHHHHHHHCCcEEEEEcCCCCCCCCchhhcc------
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-------KSLAFLSSVGYSLLIVNYRGSLGFGEEALQS------ 642 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~-------~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~------ 642 (789)
+...++.|.+ .+.|.||++||++.+ ...|. .....|+++||.|+++|+||.+..+......
T Consensus 50 ~~~~~~~p~~----~~~~~vvl~HG~g~~--~~~~~~~pdg~~~~~~~l~~~G~~V~~~D~~G~G~S~~~~~~~~~~~~~ 123 (328)
T 1qlw_A 50 MYVRYQIPQR----AKRYPITLIHGCCLT--GMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKLG 123 (328)
T ss_dssp EEEEEEEETT----CCSSCEEEECCTTCC--GGGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCHHHHHHHTT
T ss_pred EEEEEEccCC----CCCccEEEEeCCCCC--CCccccCCCCchHHHHHHHHCCCeEEEECCCCcccCCCCCccccccccc
Confidence 4555666752 234679999997754 44565 3678899999999999999843222111000
Q ss_pred -------------------------------CCC-CCCcccHHH------------------HHHHHHHHHHcCCCCCcc
Q 003886 643 -------------------------------LPG-KVGSQDVND------------------VLTAIDHVIDMGLANPSK 672 (789)
Q Consensus 643 -------------------------------~~~-~~~~~~~~D------------------~~~~i~~l~~~~~~d~~r 672 (789)
..+ .+....+++ +.+++..++++ + ++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~--~~ 199 (328)
T 1qlw_A 124 KAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMPTPNPTVANLSKLAIK--L--DG 199 (328)
T ss_dssp SSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCCSCGGGHHHHHHHCCCBCGGGSCSSCHHHHHHHHHHHH--H--TS
T ss_pred ccCcccccceeccchhhhhhHhhhcccCCccCcCccCCHHHHHHHHHHhCccccccCCChhHHHHHHHHHHHH--h--CC
Confidence 000 000000223 55666666665 2 38
Q ss_pred EEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCcc
Q 003886 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI 752 (789)
Q Consensus 673 v~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~ 752 (789)
+.++|||+||.+++.++.++|++++++|+.+|... . .+.
T Consensus 200 ~~lvGhS~GG~~a~~~a~~~p~~v~~~v~~~p~~~-----------------------------~------------~~~ 238 (328)
T 1qlw_A 200 TVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGEC-----------------------------P------------KPE 238 (328)
T ss_dssp EEEEEEGGGTTHHHHHHHHCCTTEEEEEEESCSCC-----------------------------C------------CGG
T ss_pred ceEEEECcccHHHHHHHHhChhheeEEEEeCCCCC-----------------------------C------------CHH
Confidence 99999999999999999999999999999987530 0 001
Q ss_pred ccCCCCCCCEEEEEeCCCCCCCh-----HHHHHHHHHCC
Q 003886 753 SHISKVKTPTIFLLGAQDLRVPV-----SNGLQVIYHIP 786 (789)
Q Consensus 753 ~~~~~i~~P~Lii~G~~D~~vp~-----~~~~~l~~~l~ 786 (789)
.....+++|+|++||++|..+|+ +++.++++.++
T Consensus 239 ~~~~~~~~PvLii~G~~D~~~p~~~~~~~~~~~~~~~l~ 277 (328)
T 1qlw_A 239 DVKPLTSIPVLVVFGDHIEEFPRWAPRLKACHAFIDALN 277 (328)
T ss_dssp GCGGGTTSCEEEEECSSCTTCTTTHHHHHHHHHHHHHHH
T ss_pred HHhhccCCCEEEEeccCCccccchhhHHHHHHHHHHHHH
Confidence 11223578999999999999997 99999988875
|
| >2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural mycobacterium tuberculosis structural proteomics project, X hydrolase; 2.10A {Mycobacterium tuberculosis} PDB: 2zjf_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=8.1e-13 Score=142.25 Aligned_cols=122 Identities=20% Similarity=0.316 Sum_probs=90.8
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
.+|..++....-|+ +...|+||++||.+.+ ...|......|+++||.|+++|+|| +|.+... ......
T Consensus 10 ~~g~~l~y~~~G~~----~~~~~~vv~~hG~~~~--~~~~~~~~~~l~~~g~~vi~~d~~g---~g~s~~~---~~~~~~ 77 (356)
T 2e3j_A 10 CRGTRIHAVADSPP----DQQGPLVVLLHGFPES--WYSWRHQIPALAGAGYRVVAIDQRG---YGRSSKY---RVQKAY 77 (356)
T ss_dssp ETTEEEEEEEECCT----TCCSCEEEEECCTTCC--GGGGTTTHHHHHHTTCEEEEECCTT---STTSCCC---CSGGGG
T ss_pred cCCeEEEEEEecCC----CCCCCEEEEECCCCCc--HHHHHHHHHHHHHcCCEEEEEcCCC---CCCCCCC---Cccccc
Confidence 36788887776653 2356899999997764 4567677888999999999999998 4443321 111123
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
.++++.+.+..+++. ++.++++|+|||+||.+++.++.++|++++++|+.++..
T Consensus 78 ~~~~~~~~~~~~~~~--l~~~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~ 131 (356)
T 2e3j_A 78 RIKELVGDVVGVLDS--YGAEQAFVVGHDWGAPVAWTFAWLHPDRCAGVVGISVPF 131 (356)
T ss_dssp SHHHHHHHHHHHHHH--TTCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESSCC
T ss_pred CHHHHHHHHHHHHHH--cCCCCeEEEEECHhHHHHHHHHHhCcHhhcEEEEECCcc
Confidence 455666655555554 456799999999999999999999999999999988654
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.3e-12 Score=135.91 Aligned_cols=286 Identities=14% Similarity=0.167 Sum_probs=166.9
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
.+...+|||||+.||..+..+ .+.+| .++..........+..+.| ..++|||||+.||..+.+....
T Consensus 18 ~v~~l~~sp~g~~las~~~D~-----~i~iw~~~~~~~~~~~~~~~~h~~~v------~~~~~sp~g~~l~s~s~D~~v~ 86 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDR-----RIRIWGTEGDSWICKSVLSEGHQRTV------RKVAWSPCGNYLASASFDATTC 86 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTS-----CEEEEEEETTEEEEEEEECSSCSSCE------EEEEECTTSSEEEEEETTSCEE
T ss_pred cEEEEEECCCCCEEEEEcCCC-----eEEEEEcCCCcceeeeeeccccCCcE------EEEEECCCCCEEEEEECCCcEE
Confidence 477899999999999876553 45566 2332222222222333334 7899999999999888766433
Q ss_pred CCCccCCCCC--CCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCce----EeccCCCCCCccceEEEeeCC
Q 003886 233 KPTFSLGSTK--GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV----QAVKGIPKSLSVGQVVWAPLN 306 (789)
Q Consensus 233 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~----~~l~~~~~~~~~~~~~wSPDg 306 (789)
.|...... .......+...+....|.++....+++..+..|.+||+.+++. ..+ ......+..++|+|||
T Consensus 87 --iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 87 --IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL--NSHTQDVKHVVWHPSQ 162 (345)
T ss_dssp --EEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEE--CCCCSCEEEEEECSSS
T ss_pred --EEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEe--cCcCCCeEEEEECCCC
Confidence 23321111 1112233444455667888866666667788999999987642 223 2233457789999999
Q ss_pred CCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC---eeecCCCCCccCcceecCCC
Q 003886 307 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESISSAFFPRFSPDG 383 (789)
Q Consensus 307 ~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~Lt~~~~~~~~p~~SpDG 383 (789)
+. |+..+. +..|.++|+ .++. ...+..+...+...+|||||
T Consensus 163 ~~----l~s~s~---------------d~~i~~w~~-----------------~~~~~~~~~~~~~h~~~v~~l~~sp~g 206 (345)
T 3fm0_A 163 EL----LASASY---------------DDTVKLYRE-----------------EEDDWVCCATLEGHESTVWSLAFDPSG 206 (345)
T ss_dssp SC----EEEEET---------------TSCEEEEEE-----------------ETTEEEEEEEECCCSSCEEEEEECTTS
T ss_pred CE----EEEEeC---------------CCcEEEEEe-----------------cCCCEEEEEEecCCCCceEEEEECCCC
Confidence 98 777663 224666665 2222 34566677778899999999
Q ss_pred CEEEEEecCCCCCCCCccccceeEEeecCCCCC-CCccc-ce---eeEEeeeeccCCCCCccccccCCCCCccccCCCEE
Q 003886 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN-FSSLE-KI---VDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 458 (789)
Q Consensus 384 ~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~-~~~t~-~~---~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l 458 (789)
++|+..+.+. .|.+||....+. ..+.. .. ...+.. +.+.....+..+.|++++..|
T Consensus 207 ~~l~s~s~D~-----------~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~h~~~v~~v~~~~~~~~l 267 (345)
T 3fm0_A 207 QRLASCSDDR-----------TVRIWRQYLPGNEQGVACSGSDPSWKCICT--------LSGFHSRTIYDIAWCQLTGAL 267 (345)
T ss_dssp SEEEEEETTS-----------CEEEEEEECTTCTTCCCCC---CEEEEEEE--------ECSSCSSCEEEEEECTTTCCE
T ss_pred CEEEEEeCCC-----------eEEEeccccCCCCccceeeccCCccceeEE--------ecCCCCCcEEEEEEecCCCEE
Confidence 9998877553 377777532221 11110 00 001110 011111234567899999855
Q ss_pred EEEEEeCCeEEEEEEECCCCc------E-EEecCC-CCCceeEEeeecCCEEEEEEeCCCC
Q 003886 459 LLSSIWGSSQVIISVNVSSGE------L-LRITPA-ESNFSWSLLTLDGDNIIAVSSSPVD 511 (789)
Q Consensus 459 ~~~~~~~~~~~l~~~dl~tg~------~-~~lt~~-~~~~~~~~~s~dg~~l~~~~ss~~~ 511 (789)
+++..++...+|.++..... . ..+... ...+....|+|++..++++++....
T Consensus 268 -~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~ 327 (345)
T 3fm0_A 268 -ATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE 327 (345)
T ss_dssp -EEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSC
T ss_pred -EEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCc
Confidence 56666777778876542211 1 111122 2244556788887666666665544
|
| >2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway, coenzyme A, structure-functi studies, alpha-beta hydrolase fold; 1.65A {Haemophilus influenzae} SCOP: c.69.1.40 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-13 Score=146.75 Aligned_cols=131 Identities=12% Similarity=0.119 Sum_probs=87.5
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch-------hhHHHHH---HHHHCCcEEEEEcCCC-CCCCCchhh
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-------SYSKSLA---FLSSVGYSLLIVNYRG-SLGFGEEAL 640 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-------~~~~~~~---~la~~Gy~V~~~d~rG-s~G~G~~~~ 640 (789)
+|..++....-+. ...+.|+||++||.+.+.... .|..... .|+++||.|+++|+|| .++......
T Consensus 42 ~g~~l~y~~~g~~---~~~~~~~vvllHG~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~~vi~~D~~G~~g~s~~~~~ 118 (377)
T 2b61_A 42 SYINVAYQTYGTL---NDEKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGGCKGTTGPSS 118 (377)
T ss_dssp CSEEEEEEEESCC---CTTCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTCSSSSSCTTS
T ss_pred cceeEEEEecccc---cccCCCeEEEeCCCCCccccccccccchhhhhccCcccccccCCceEEEecCCCCCCCCCCCcc
Confidence 4555554444332 222368999999987764320 1544442 3668899999999998 333221100
Q ss_pred -ccC-C----CCCCcccHHHHHHHHHHHHHcCCCCCccEE-EEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 641 -QSL-P----GKVGSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 641 -~~~-~----~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~-l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
... . ..+....++|+.+.+..+++. ++.+++. |+|||+||.+++.+|.++|++++++|+.+|...
T Consensus 119 ~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~--l~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 190 (377)
T 2b61_A 119 INPQTGKPYGSQFPNIVVQDIVKVQKALLEH--LGISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSSIY 190 (377)
T ss_dssp BCTTTSSBCGGGCCCCCHHHHHHHHHHHHHH--TTCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCCSS
T ss_pred cCccccccccccCCcccHHHHHHHHHHHHHH--cCCcceeEEEEEChhHHHHHHHHHHCchhhheeEEeccCcc
Confidence 000 0 001134678888888888776 4567888 999999999999999999999999999998643
|
| >1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET: PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB: 1qtr_A* 1x2b_A* 1x2e_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-12 Score=137.91 Aligned_cols=119 Identities=18% Similarity=0.294 Sum_probs=82.0
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
.+|..++....-+. ..|.||++||++++.....+ ...+...||.|+++|+|| +|.+... ......
T Consensus 22 ~~g~~l~~~~~g~~------~g~~vvllHG~~~~~~~~~~---~~~~~~~~~~vi~~D~~G---~G~S~~~---~~~~~~ 86 (317)
T 1wm1_A 22 GDGHRIYWELSGNP------NGKPAVFIHGGPGGGISPHH---RQLFDPERYKVLLFDQRG---CGRSRPH---ASLDNN 86 (317)
T ss_dssp SSSCEEEEEEEECT------TSEEEEEECCTTTCCCCGGG---GGGSCTTTEEEEEECCTT---STTCBST---TCCTTC
T ss_pred CCCcEEEEEEcCCC------CCCcEEEECCCCCcccchhh---hhhccccCCeEEEECCCC---CCCCCCC---cccccc
Confidence 36777764443221 23668999998765322222 223445799999999998 5555321 111223
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
..+++.+.+..+++. ++.+++.|+|||+||.+++.+|.++|++++++|+.++..
T Consensus 87 ~~~~~~~dl~~l~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 140 (317)
T 1wm1_A 87 TTWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFT 140 (317)
T ss_dssp SHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred cHHHHHHHHHHHHHH--cCCCcEEEEEeCHHHHHHHHHHHHCChheeeeeEeccCC
Confidence 466666666666665 456789999999999999999999999999999988653
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-11 Score=131.08 Aligned_cols=246 Identities=16% Similarity=0.131 Sum_probs=138.7
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
.+..++|||||++|++....+ +.-.+|.+. .+++...+..... ++.+ ..++|||||++|++....
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~s~dg~~l~~~~~~----- 104 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPE-FRVLAYRIAPDDGALTFAAESAL--PGSL------THISTDHQGQFVFVGSYN----- 104 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTT-TEEEEEEECTTTCCEEEEEEEEC--SSCC------SEEEECTTSSEEEEEETT-----
T ss_pred CCceEEECCCCCEEEEeecCC-CeEEEEEecCCCCceeecccccc--CCCC------cEEEEcCCCCEEEEEecC-----
Confidence 466789999999998877643 222333343 2455444433321 1112 689999999988776432
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCC---ceEeccCCCCCCccceEEEeeCCCCCc
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG---EVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g---~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
...|.+||+..+ +.... ......+..++|+|||+.
T Consensus 105 --------------------------------------~~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~-- 142 (343)
T 1ri6_A 105 --------------------------------------AGNVSVTRLEDGLPVGVVDV--VEGLDGCHSANISPDNRT-- 142 (343)
T ss_dssp --------------------------------------TTEEEEEEEETTEEEEEEEE--ECCCTTBCCCEECTTSSE--
T ss_pred --------------------------------------CCeEEEEECCCCcccccccc--ccCCCCceEEEECCCCCE--
Confidence 256888888433 33333 233345678899999997
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCC-CCeee-----cCC-CCCccCcceecCCC
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVN-----LTE-SISSAFFPRFSPDG 383 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~-----Lt~-~~~~~~~p~~SpDG 383 (789)
|++.... ...|+++|+ .+ +.... +.. ........+|+|||
T Consensus 143 --l~~~~~~--------------~~~v~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg 189 (343)
T 1ri6_A 143 --LWVPALK--------------QDRICLFTV-----------------SDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE 189 (343)
T ss_dssp --EEEEEGG--------------GTEEEEEEE-----------------CTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred --EEEecCC--------------CCEEEEEEe-----------------cCCCceeeecccccccCCCCCcceEEECCCC
Confidence 6554411 226888887 33 43321 221 12245568899999
Q ss_pred CEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEE
Q 003886 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 463 (789)
Q Consensus 384 ~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (789)
++|++..... ..+.+||++....... ...... ..+. .+.+ ......+.|+|||+.|+++..
T Consensus 190 ~~l~~~~~~~----------~~i~~~~~~~~~g~~~---~~~~~~--~~~~--~~~~--~~~~~~i~~s~dg~~l~v~~~ 250 (343)
T 1ri6_A 190 QYAYCVNELN----------SSVDVWELKDPHGNIE---CVQTLD--MMPE--NFSD--TRWAADIHITPDGRHLYACDR 250 (343)
T ss_dssp SEEEEEETTT----------TEEEEEESSCTTSCCE---EEEEEE--CSCT--TCCS--CCCEEEEEECTTSSEEEEEET
T ss_pred CEEEEEeCCC----------CEEEEEEecCCCCcEE---EEeecc--ccCc--cccc--cCCccceEECCCCCEEEEEec
Confidence 9887766332 3688888854211100 000011 0010 0100 001224789999998877665
Q ss_pred eCCeEEEEEEECCCCcEEEec--CCCCCceeEEeeecCCEEEEEEeC
Q 003886 464 WGSSQVIISVNVSSGELLRIT--PAESNFSWSLLTLDGDNIIAVSSS 508 (789)
Q Consensus 464 ~~~~~~l~~~dl~tg~~~~lt--~~~~~~~~~~~s~dg~~l~~~~ss 508 (789)
..+...+|.++..+++.+.+. ..........++++|+.+++....
T Consensus 251 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 297 (343)
T 1ri6_A 251 TASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQK 297 (343)
T ss_dssp TTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTT
T ss_pred CCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCC
Confidence 556666665554466555442 222223456889999887766543
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-12 Score=149.06 Aligned_cols=186 Identities=10% Similarity=0.012 Sum_probs=112.0
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCc-cceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS-VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (789)
..||||++++-.. ..+.+.++++....... ..+.... +.+...+|||||++||...... +....
T Consensus 66 ~~spdg~~lasg~---------~d~~v~lWd~~~~~~~~~~~~~~~~-----~~v~~v~fs~dg~~l~~~~~~~-~~~~~ 130 (611)
T 1nr0_A 66 KTSPSGYYCASGD---------VHGNVRIWDTTQTTHILKTTIPVFS-----GPVKDISWDSESKRIAAVGEGR-ERFGH 130 (611)
T ss_dssp EECTTSSEEEEEE---------TTSEEEEEESSSTTCCEEEEEECSS-----SCEEEEEECTTSCEEEEEECCS-SCSEE
T ss_pred EECCCCcEEEEEe---------CCCCEEEeECCCCcceeeEeecccC-----CceEEEEECCCCCEEEEEECCC-CceeE
Confidence 3479999886532 23456677663221111 1122222 4588999999999999876543 22234
Q ss_pred EEEecCCceeEEEecCCCccccccCCCcccceeecCCCCE-EEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceee
Q 003886 182 FELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL-IAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (789)
Q Consensus 182 ~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~-la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (789)
..+|+.++....+ .+..+.| ..+.|+||++. |+..+.+.... .|+....+.......+..++....|+
T Consensus 131 v~~wd~~~~~~~l---~gh~~~v------~~v~f~p~~~~~l~s~s~D~~v~--lwd~~~~~~~~~l~~H~~~V~~v~fs 199 (611)
T 1nr0_A 131 VFLFDTGTSNGNL---TGQARAM------NSVDFKPSRPFRIISGSDDNTVA--IFEGPPFKFKSTFGEHTKFVHSVRYN 199 (611)
T ss_dssp EEETTTCCBCBCC---CCCSSCE------EEEEECSSSSCEEEEEETTSCEE--EEETTTBEEEEEECCCSSCEEEEEEC
T ss_pred EEEeeCCCCccee---cCCCCCc------eEEEECCCCCeEEEEEeCCCeEE--EEECCCCeEeeeeccccCceEEEEEC
Confidence 5566554432221 1222233 78999999974 77766665432 33322222222334566666677899
Q ss_pred CCcccccCCccCceEEEEEccCCceEeccCC------CCCCccceEEEeeCCCCCccEEEEEee
Q 003886 261 EDWGETYAGKRQPSLFVININSGEVQAVKGI------PKSLSVGQVVWAPLNEGLHQYLVFVGW 318 (789)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~------~~~~~~~~~~wSPDg~~~~~~l~f~~~ 318 (789)
+|.....++..+..|.+||+.+++....... .....+..++|+|||+. |+..+.
T Consensus 200 pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~----l~s~s~ 259 (611)
T 1nr0_A 200 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK----IASASA 259 (611)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE----EEEEET
T ss_pred CCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCE----EEEEeC
Confidence 9865556677788999999988876543100 22346778999999998 776663
|
| >4g9e_A AHL-lactonase, alpha/beta hydrolase fold protein; AHL-binding; HET: C4L; 1.09A {Ochrobactrum} PDB: 4g5x_A* 4g8b_A* 4g8d_A 4g8c_A* 4g9g_A | Back alignment and structure |
|---|
Probab=99.48 E-value=6.1e-14 Score=144.38 Aligned_cols=105 Identities=15% Similarity=0.217 Sum_probs=75.9
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
+.|+||++||.+.+ ...|......|.++||.|+++|+|| +|.+.... .......++++.+.+..+++. ++.
T Consensus 23 ~~~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~v~~~d~~G---~G~s~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~ 93 (279)
T 4g9e_A 23 EGAPLLMIHGNSSS--GAIFAPQLEGEIGKKWRVIAPDLPG---HGKSTDAI--DPDRSYSMEGYADAMTEVMQQ--LGI 93 (279)
T ss_dssp CEEEEEEECCTTCC--GGGGHHHHHSHHHHHEEEEEECCTT---STTSCCCS--CHHHHSSHHHHHHHHHHHHHH--HTC
T ss_pred CCCeEEEECCCCCc--hhHHHHHHhHHHhcCCeEEeecCCC---CCCCCCCC--CcccCCCHHHHHHHHHHHHHH--hCC
Confidence 56889999997764 5567777777777899999999998 44433110 011223466666666666665 345
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
+++.|+|||+||.+++.++.++|+ +.++|+.++.
T Consensus 94 ~~~~lvG~S~Gg~~a~~~a~~~p~-~~~~vl~~~~ 127 (279)
T 4g9e_A 94 ADAVVFGWSLGGHIGIEMIARYPE-MRGLMITGTP 127 (279)
T ss_dssp CCCEEEEETHHHHHHHHHTTTCTT-CCEEEEESCC
T ss_pred CceEEEEECchHHHHHHHHhhCCc-ceeEEEecCC
Confidence 689999999999999999999998 5666555543
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-12 Score=139.72 Aligned_cols=267 Identities=12% Similarity=0.090 Sum_probs=159.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
..+...+|||||++|+.....+ .+.+| ..++....+.. ..+.+ ..+.|+|||+.|+..+.+....
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~dg-----~i~i~~~~~~~~~~~~~---~~~~v------~~~~~~~~~~~l~~~~~d~~i~ 174 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVENG-----ELRLWNKTGALLNVLNF---HRAPI------VSVKWNKDGTHIISMDVENVTI 174 (425)
T ss_dssp BCEEEEEECTTSSEEEEEETTS-----CEEEEETTSCEEEEECC---CCSCE------EEEEECTTSSEEEEEETTCCEE
T ss_pred CceEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCeeeeccC---CCccE------EEEEECCCCCEEEEEecCCeEE
Confidence 3688999999999999876543 34555 44444443331 11222 7899999999999877654322
Q ss_pred CCCccCCCCCCCCCCcCCCC---------------CCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCcc
Q 003886 233 KPTFSLGSTKGGSSDKDCNS---------------WKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSV 297 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~ 297 (789)
.|+............... ......|.++ +..+.+..+..|++||+.+++..... ......+
T Consensus 175 --iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~-~~~~~~i 250 (425)
T 1r5m_A 175 --LWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKL-IGHHGPI 250 (425)
T ss_dssp --EEETTTTEEEEEECCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEE-CCCSSCE
T ss_pred --EEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeee-ccCCCce
Confidence 232211111111111111 1334556665 44556666789999999987654331 2334467
Q ss_pred ceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcc
Q 003886 298 GQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFP 377 (789)
Q Consensus 298 ~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p 377 (789)
..++|+||++. |+..+ ....|+++|+. .......+..+...+...
T Consensus 251 ~~~~~~~~~~~----l~~~~---------------~d~~i~i~d~~----------------~~~~~~~~~~~~~~i~~~ 295 (425)
T 1r5m_A 251 SVLEFNDTNKL----LLSAS---------------DDGTLRIWHGG----------------NGNSQNCFYGHSQSIVSA 295 (425)
T ss_dssp EEEEEETTTTE----EEEEE---------------TTSCEEEECSS----------------SBSCSEEECCCSSCEEEE
T ss_pred EEEEECCCCCE----EEEEc---------------CCCEEEEEECC----------------CCccceEecCCCccEEEE
Confidence 88999999997 66655 23368888872 223345566566778899
Q ss_pred eecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCE
Q 003886 378 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 457 (789)
Q Consensus 378 ~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~ 457 (789)
.|+||| .|+..+.+ ..|++||+.++...... .. ....+..+.|+|||+.
T Consensus 296 ~~~~~~-~l~~~~~d-----------~~i~i~d~~~~~~~~~~----------~~---------~~~~i~~~~~s~~~~~ 344 (425)
T 1r5m_A 296 SWVGDD-KVISCSMD-----------GSVRLWSLKQNTLLALS----------IV---------DGVPIFAGRISQDGQK 344 (425)
T ss_dssp EEETTT-EEEEEETT-----------SEEEEEETTTTEEEEEE----------EC---------TTCCEEEEEECTTSSE
T ss_pred EECCCC-EEEEEeCC-----------CcEEEEECCCCcEeEec----------cc---------CCccEEEEEEcCCCCE
Confidence 999999 66655543 36999998765432110 00 0012346789999986
Q ss_pred EEEEEEeCCeEEEEEEECCCCc--------------------E-EEecCCCC--CceeEEeeecCCEEEEEEe
Q 003886 458 MLLSSIWGSSQVIISVNVSSGE--------------------L-LRITPAES--NFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 458 l~~~~~~~~~~~l~~~dl~tg~--------------------~-~~lt~~~~--~~~~~~~s~dg~~l~~~~s 507 (789)
|+ ++..++...+| |+.+++ . ..+..... .+....|+++++.|+....
T Consensus 345 l~-~~~~dg~i~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 414 (425)
T 1r5m_A 345 YA-VAFMDGQVNVY--DLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYS 414 (425)
T ss_dssp EE-EEETTSCEEEE--ECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEES
T ss_pred EE-EEECCCeEEEE--ECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEec
Confidence 64 45555555555 555555 3 33333322 4555678888886655443
|
| >1azw_A Proline iminopeptidase; aminopeptidase, serine protease, xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP: c.69.1.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.8e-13 Score=140.89 Aligned_cols=119 Identities=18% Similarity=0.281 Sum_probs=81.8
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
.+|..++....-+. +.|.||++||++++.....+ ...+...||.|+++|+|| +|.+.... .....
T Consensus 19 ~~g~~l~y~~~G~~------~g~pvvllHG~~~~~~~~~~---~~~~~~~~~~vi~~D~~G---~G~S~~~~---~~~~~ 83 (313)
T 1azw_A 19 DDRHTLYFEQCGNP------HGKPVVMLHGGPGGGCNDKM---RRFHDPAKYRIVLFDQRG---SGRSTPHA---DLVDN 83 (313)
T ss_dssp SSSCEEEEEEEECT------TSEEEEEECSTTTTCCCGGG---GGGSCTTTEEEEEECCTT---STTSBSTT---CCTTC
T ss_pred CCCCEEEEEecCCC------CCCeEEEECCCCCccccHHH---HHhcCcCcceEEEECCCC---CcCCCCCc---ccccc
Confidence 36667765444321 23668999998765322221 223445799999999998 66553211 11223
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
..+++.+.+..+++. ++.+++.|+||||||.+++.++.++|++++++|+.++..
T Consensus 84 ~~~~~~~dl~~l~~~--l~~~~~~lvGhSmGg~ia~~~a~~~p~~v~~lvl~~~~~ 137 (313)
T 1azw_A 84 TTWDLVADIERLRTH--LGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFL 137 (313)
T ss_dssp CHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred cHHHHHHHHHHHHHH--hCCCceEEEEECHHHHHHHHHHHhChhheeEEEEecccc
Confidence 466666666666665 455789999999999999999999999999999988753
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.9e-13 Score=143.42 Aligned_cols=288 Identities=9% Similarity=0.039 Sum_probs=163.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCC-CeEEEEec--CCceeE-EEecCCCccccccCCCcccceeecCCCCEEEEEeecC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENES-PIQFELWS--QSQLEK-EFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~-~~~~~i~~--~~~~~~-~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~ 229 (789)
..+.+.+|||||++||..+.....- ..-..+|. .+.... +.......++.| ..++|+||++.|+ .+.+.
T Consensus 43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V------~~~~~s~d~~~l~-~s~dg 115 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGV------TDVAWVSEKGILV-ASDSG 115 (357)
T ss_dssp SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCE------EEEEEETTTEEEE-EETTS
T ss_pred CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCE------EEEEEcCCCCEEE-EECCC
Confidence 3588999999999999877542100 11233442 221110 000001111222 7899999997554 44444
Q ss_pred CCCCCCccCCCCCCCCC----CcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeC
Q 003886 230 SPSKPTFSLGSTKGGSS----DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 305 (789)
Q Consensus 230 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPD 305 (789)
.. ..|+....+.... ...+...+....|.++....+++..+..|.+||+.+++..... ......+..++|+|+
T Consensus 116 ~v--~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~ 192 (357)
T 4g56_B 116 AV--ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY-NAHSSEVNCVAACPG 192 (357)
T ss_dssp CE--EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTT
T ss_pred EE--EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEccC
Confidence 32 2444322221111 1134444556678888666666777889999999998765441 223446778999999
Q ss_pred CCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe-eec--CCCCCccCcceecCC
Q 003886 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNL--TESISSAFFPRFSPD 382 (789)
Q Consensus 306 g~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~L--t~~~~~~~~p~~SpD 382 (789)
++. ++.++. .+..|.++|+ .+++. ..+ ......+...+|+|+
T Consensus 193 ~~~----~~~s~~--------------~dg~v~~wd~-----------------~~~~~~~~~~~~~~~~~v~~v~~sp~ 237 (357)
T 4g56_B 193 KDT----IFLSCG--------------EDGRILLWDT-----------------RKPKPATRIDFCASDTIPTSVTWHPE 237 (357)
T ss_dssp CSS----CEEEEE--------------TTSCEEECCT-----------------TSSSCBCBCCCTTCCSCEEEEEECTT
T ss_pred CCc----eeeeec--------------cCCceEEEEC-----------------CCCceeeeeeeccccccccchhhhhc
Confidence 986 555542 2236888887 33332 222 233445678899999
Q ss_pred CCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEE
Q 003886 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 462 (789)
Q Consensus 383 G~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~ 462 (789)
+..++.....+ ..|++||+.++......... ...+..+.|+||++.+++++
T Consensus 238 ~~~~la~g~~d----------~~i~~wd~~~~~~~~~~~~~-------------------~~~v~~l~~sp~~~~~lasg 288 (357)
T 4g56_B 238 KDDTFACGDET----------GNVSLVNIKNPDSAQTSAVH-------------------SQNITGLAYSYHSSPFLASI 288 (357)
T ss_dssp STTEEEEEESS----------SCEEEEESSCGGGCEEECCC-------------------SSCEEEEEECSSSSCCEEEE
T ss_pred ccceEEEeecc----------cceeEEECCCCcEeEEEecc-------------------ceeEEEEEEcCCCCCEEEEE
Confidence 76544433222 25899998775442111110 01244678999998777777
Q ss_pred EeCCeEEEEEEECCCCcEEEecCCCCCceeEEeee-cCCEEEEEEeCCCCCCeEEEEeec
Q 003886 463 IWGSSQVIISVNVSSGELLRITPAESNFSWSLLTL-DGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 463 ~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~-dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
..++...|| |+.++++.+.......+....|+| +++. +++.+.... |.+.++.
T Consensus 289 s~D~~i~iw--d~~~~~~~~~~~H~~~V~~vafsP~d~~~-l~s~s~Dg~---v~iW~~~ 342 (357)
T 4g56_B 289 SEDCTVAVL--DADFSEVFRDLSHRDFVTGVAWSPLDHSK-FTTVGWDHK---VLHHHLP 342 (357)
T ss_dssp ETTSCEEEE--CTTSCEEEEECCCSSCEEEEEECSSSTTE-EEEEETTSC---EEEEECC
T ss_pred eCCCEEEEE--ECCCCcEeEECCCCCCEEEEEEeCCCCCE-EEEEcCCCe---EEEEECC
Confidence 776665555 788898877665444455567887 5554 445554433 5555553
|
| >1mj5_A 1,3,4,6-tetrachloro-1,4-cyclohexadiene hydrolase; LINB, haloalkane dehalogenase, 1, 3, 4, 4-cyclohexadiene dehalogenase; 0.95A {Sphingomonas paucimobilis} SCOP: c.69.1.8 PDB: 1cv2_A 1d07_A 2bfn_A 1g42_A* 1g4h_A* 1g5f_A* 1iz7_A 1iz8_A* 1k5p_A 1k63_A 1k6e_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-13 Score=142.36 Aligned_cols=121 Identities=12% Similarity=0.124 Sum_probs=86.9
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCc
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~ 649 (789)
..+|..++....- +.|+||++||.+.+ ...|......|++. |.|+++|+|| +|.+..... .....
T Consensus 15 ~~~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~L~~~-~~vi~~D~~G---~G~S~~~~~-~~~~~ 79 (302)
T 1mj5_A 15 EIKGRRMAYIDEG--------TGDPILFQHGNPTS--SYLWRNIMPHCAGL-GRLIACDLIG---MGDSDKLDP-SGPER 79 (302)
T ss_dssp EETTEEEEEEEES--------CSSEEEEECCTTCC--GGGGTTTGGGGTTS-SEEEEECCTT---STTSCCCSS-CSTTS
T ss_pred EECCEEEEEEEcC--------CCCEEEEECCCCCc--hhhhHHHHHHhccC-CeEEEEcCCC---CCCCCCCCC-CCccc
Confidence 3467777654432 24889999997764 44566566667655 8999999998 554432110 01222
Q ss_pred ccHHHHHHHHHHHHHcCCCCC-ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 650 QDVNDVLTAIDHVIDMGLANP-SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~-~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
..++++.+.+..+++. ++. +++.|+|||+||.+++.++.++|++++++|+.+|...
T Consensus 80 ~~~~~~~~~~~~~l~~--l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 136 (302)
T 1mj5_A 80 YAYAEHRDYLDALWEA--LDLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIAM 136 (302)
T ss_dssp SCHHHHHHHHHHHHHH--TTCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECCS
T ss_pred ccHHHHHHHHHHHHHH--hCCCceEEEEEECCccHHHHHHHHHCHHHHhheeeecccCC
Confidence 4577777777777665 345 7899999999999999999999999999999998653
|
| >3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural genomics, protein structure initiative, PSI-2; HET: MSE; 1.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.2e-13 Score=138.66 Aligned_cols=120 Identities=17% Similarity=0.252 Sum_probs=84.6
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
+...+|..++...+-+.+ +.|.||++||.+.+ ...|......|++ ||.|+++|+|| +|.+.... ..
T Consensus 10 ~~~~~g~~l~~~~~g~~~-----~~~~vvllHG~~~~--~~~~~~~~~~L~~-~~~vi~~Dl~G---~G~S~~~~---~~ 75 (285)
T 3bwx_A 10 WTSSDGLRLHFRAYEGDI-----SRPPVLCLPGLTRN--ARDFEDLATRLAG-DWRVLCPEMRG---RGDSDYAK---DP 75 (285)
T ss_dssp EECTTSCEEEEEEECBCT-----TSCCEEEECCTTCC--GGGGHHHHHHHBB-TBCEEEECCTT---BTTSCCCS---SG
T ss_pred eecCCCceEEEEEcCCCC-----CCCcEEEECCCCcc--hhhHHHHHHHhhc-CCEEEeecCCC---CCCCCCCC---Cc
Confidence 445578888877665431 25779999997764 5677777778876 89999999998 55543211 11
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeC
Q 003886 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 703 (789)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~ 703 (789)
....++++.+.+..+++. +..+++.|+|||+||.+++.+|.++|++++++|+.+
T Consensus 76 ~~~~~~~~a~dl~~~l~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~ 129 (285)
T 3bwx_A 76 MTYQPMQYLQDLEALLAQ--EGIERFVAIGTSLGGLLTMLLAAANPARIAAAVLND 129 (285)
T ss_dssp GGCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEES
T ss_pred cccCHHHHHHHHHHHHHh--cCCCceEEEEeCHHHHHHHHHHHhCchheeEEEEec
Confidence 123344444444444443 234689999999999999999999999999999865
|
| >1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein, structural genomics, protein structure initiative, PSI; HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB: 1y7i_A* 1y7h_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.5e-13 Score=137.22 Aligned_cols=103 Identities=20% Similarity=0.253 Sum_probs=79.3
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCC-C
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN-P 670 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d-~ 670 (789)
.|.||++||.+.+ ...|......|+++||.|+++|+|| +|.+.... .....++++.+.+..+++. ++ .
T Consensus 4 ~~~vvllHG~~~~--~~~w~~~~~~L~~~g~rVia~Dl~G---~G~S~~~~----~~~~~~~~~a~dl~~~l~~--l~~~ 72 (273)
T 1xkl_A 4 GKHFVLVHGACHG--GWSWYKLKPLLEAAGHKVTALDLAA---SGTDLRKI----EELRTLYDYTLPLMELMES--LSAD 72 (273)
T ss_dssp CCEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEECCCTT---STTCCCCG----GGCCSHHHHHHHHHHHHHT--SCSS
T ss_pred CCeEEEECCCCCC--cchHHHHHHHHHhCCCEEEEecCCC---CCCCccCc----ccccCHHHHHHHHHHHHHH--hccC
Confidence 4789999997764 4567778889999999999999998 55543110 1123466666666666665 33 4
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
+++.|+||||||++++.++.++|++++++|+.++.
T Consensus 73 ~~~~lvGhSmGG~va~~~a~~~P~~v~~lvl~~~~ 107 (273)
T 1xkl_A 73 EKVILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAF 107 (273)
T ss_dssp SCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred CCEEEEecCHHHHHHHHHHHhChHhheEEEEEecc
Confidence 78999999999999999999999999999998864
|
| >1ehy_A Protein (soluble epoxide hydrolase); alpha/beta hydrolase fold, epoxide degradation, epichlorohydrin; 2.10A {Agrobacterium tumefaciens} SCOP: c.69.1.11 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-12 Score=135.51 Aligned_cols=117 Identities=20% Similarity=0.347 Sum_probs=86.2
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~ 651 (789)
+|..++....- ..|.||++||.+.+ ...|......|++. |.|+++|+|| +|.+... .........
T Consensus 17 ~g~~l~y~~~G--------~g~~lvllHG~~~~--~~~w~~~~~~L~~~-~~via~Dl~G---~G~S~~~-~~~~~~~~~ 81 (294)
T 1ehy_A 17 PDVKIHYVREG--------AGPTLLLLHGWPGF--WWEWSKVIGPLAEH-YDVIVPDLRG---FGDSEKP-DLNDLSKYS 81 (294)
T ss_dssp SSCEEEEEEEE--------CSSEEEEECCSSCC--GGGGHHHHHHHHTT-SEEEEECCTT---STTSCCC-CTTCGGGGC
T ss_pred CCEEEEEEEcC--------CCCEEEEECCCCcc--hhhHHHHHHHHhhc-CEEEecCCCC---CCCCCCC-ccccccCcC
Confidence 56666654321 24789999997764 56788788888776 9999999998 6655421 000011345
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
++++.+.+..+++. +..+++.|+|||+||.+++.+|.++|++++++|+.++.
T Consensus 82 ~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~ 133 (294)
T 1ehy_A 82 LDKAADDQAALLDA--LGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPI 133 (294)
T ss_dssp HHHHHHHHHHHHHH--TTCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCS
T ss_pred HHHHHHHHHHHHHH--cCCCCEEEEEeChhHHHHHHHHHhChhheeEEEEecCC
Confidence 67777777766665 44578999999999999999999999999999999863
|
| >3fla_A RIFR; alpha-beta hydrolase thioesterase, hydrolase; HET: MSE; 1.80A {Amycolatopsis mediterranei} PDB: 3flb_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-13 Score=138.20 Aligned_cols=185 Identities=16% Similarity=0.139 Sum_probs=113.7
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (789)
..+.|+||++||++.+ ...|......|++. |.|+++|+|| +|.+.... ...+++++.+.+..+++. +
T Consensus 17 ~~~~~~vv~~HG~~~~--~~~~~~~~~~l~~~-~~v~~~d~~G---~G~s~~~~-----~~~~~~~~~~~~~~~l~~--~ 83 (267)
T 3fla_A 17 PDARARLVCLPHAGGS--ASFFFPLAKALAPA-VEVLAVQYPG---RQDRRHEP-----PVDSIGGLTNRLLEVLRP--F 83 (267)
T ss_dssp TTCSEEEEEECCTTCC--GGGGHHHHHHHTTT-EEEEEECCTT---SGGGTTSC-----CCCSHHHHHHHHHHHTGG--G
T ss_pred CCCCceEEEeCCCCCC--chhHHHHHHHhccC-cEEEEecCCC---CCCCCCCC-----CCcCHHHHHHHHHHHHHh--c
Confidence 4567999999997664 56777777777655 9999999998 66554221 123466666666666554 3
Q ss_pred CCccEEEEEcCccHHHHHHHHHhCCCc----eeEEEEeCCccchhhhhcC-CCCCcchhhhhccCcc-c-cccCCCCC--
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQAPDK----FVAAAARNPLCNLALMVGT-TDIPDWCYVESYGSKG-K-DSFTESPS-- 739 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~~p~~----~~a~v~~~pv~~~~~~~~~-~~~~~~~~~~~~~~~~-~-~~~~~~~~-- 739 (789)
+.+++.|+|||+||++++.++.++|++ ++++|+.++.......... .......+...+.... . ......+.
T Consensus 84 ~~~~~~lvG~S~Gg~ia~~~a~~~~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (267)
T 3fla_A 84 GDRPLALFGHSMGAIIGYELALRMPEAGLPAPVHLFASGRRAPSRYRDDDVRGASDERLVAELRKLGGSDAAMLADPELL 163 (267)
T ss_dssp TTSCEEEEEETHHHHHHHHHHHHTTTTTCCCCSEEEEESCCCTTCCCCSCTTCCCHHHHHHHHHHTCHHHHHHHHSHHHH
T ss_pred CCCceEEEEeChhHHHHHHHHHhhhhhccccccEEEECCCCccccccchhhcccchHHHHHHHHHhcCcchhhccCHHHH
Confidence 568899999999999999999999986 8899988765421111000 0000000000000000 0 00000000
Q ss_pred -------hhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 740 -------VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 740 -------~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.........+.... ..++++|+|+++|++|..+|++.+..+.+.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~P~l~i~g~~D~~~~~~~~~~~~~~~~~ 217 (267)
T 3fla_A 164 AMVLPAIRSDYRAVETYRHEP-GRRVDCPVTVFTGDHDPRVSVGEARAWEEHTTG 217 (267)
T ss_dssp HHHHHHHHHHHHHHHHCCCCT-TCCBSSCEEEEEETTCTTCCHHHHHGGGGGBSS
T ss_pred HHHHHHHHHHHHhhhcccccc-cCcCCCCEEEEecCCCCCCCHHHHHHHHHhcCC
Confidence 00111111222211 267899999999999999999999998887765
|
| >3afi_E Haloalkane dehalogenase; A/B-hydrolase, hydrolase; 1.75A {Bradyrhizobium japonicum} PDB: 3a2m_A* 3a2n_A 3a2l_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=9.6e-13 Score=139.13 Aligned_cols=115 Identities=20% Similarity=0.260 Sum_probs=84.9
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~ 651 (789)
+|..++....-+ ++.|.||++||.+.+ ...|......|++. |.|+++|+|| +|.+... . ....
T Consensus 15 ~g~~l~y~~~G~------g~~~pvvllHG~~~~--~~~w~~~~~~L~~~-~~via~Dl~G---~G~S~~~---~--~~~~ 77 (316)
T 3afi_E 15 LGSSMAYRETGA------QDAPVVLFLHGNPTS--SHIWRNILPLVSPV-AHCIAPDLIG---FGQSGKP---D--IAYR 77 (316)
T ss_dssp TTEEEEEEEESC------TTSCEEEEECCTTCC--GGGGTTTHHHHTTT-SEEEEECCTT---STTSCCC---S--SCCC
T ss_pred CCEEEEEEEeCC------CCCCeEEEECCCCCc--hHHHHHHHHHHhhC-CEEEEECCCC---CCCCCCC---C--CCCC
Confidence 566665544321 223589999998774 55677777778654 9999999998 6665321 1 1345
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
++++.+.+..+++. ++.+++.|+|||+||.+++.+|.++|++++++|+.++.
T Consensus 78 ~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~va~~~A~~~P~~v~~lvl~~~~ 129 (316)
T 3afi_E 78 FFDHVRYLDAFIEQ--RGVTSAYLVAQDWGTALAFHLAARRPDFVRGLAFMEFI 129 (316)
T ss_dssp HHHHHHHHHHHHHH--TTCCSEEEEEEEHHHHHHHHHHHHCTTTEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHH--cCCCCEEEEEeCccHHHHHHHHHHCHHhhhheeeeccC
Confidence 67777777766665 44578999999999999999999999999999998763
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.3e-12 Score=139.03 Aligned_cols=295 Identities=7% Similarity=0.047 Sum_probs=167.7
Q ss_pred cCCCCCceEEEEEeec--hhhcccceeEEEEEEeecCCCC-ccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCC
Q 003886 103 SGNGNGTQAMFSISQP--NLLANKRKKFMLSTVISKENEN-SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESP 179 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~-~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~ 179 (789)
.+||||+.+.++-+.. .+........+.++++...... ........ ..+..++|||||++|+.....+
T Consensus 19 ~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~dg---- 89 (416)
T 2pm9_A 19 AWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVD-----SKFNDLDWSHNNKIIAGALDNG---- 89 (416)
T ss_dssp CBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCS-----SCEEEEEECSSSSCEEEEESSS----
T ss_pred eeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecC-----CceEEEEECCCCCeEEEEccCC----
Confidence 3579998554543110 0011123456677766433211 11111111 4588999999999999876543
Q ss_pred eEEEEecCCc----eeEEEecCCCccccccCCCcccceeecCC-CCEEEEEeecCCCCCCCccCCCCC------CC---C
Q 003886 180 IQFELWSQSQ----LEKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIAYVAEEPSPSKPTFSLGSTK------GG---S 245 (789)
Q Consensus 180 ~~~~i~~~~~----~~~~~~~~~~~~g~v~~d~~~~~~~wSpD-g~~la~~~~~~~~~~~~~~~~~~~------~~---~ 245 (789)
...+|+-.. ...+..+. ...+.| ..+.|+|| ++.|+..+.+.... .|+..... .. .
T Consensus 90 -~v~vw~~~~~~~~~~~~~~~~-~h~~~v------~~~~~~~~~~~~l~s~~~dg~v~--iwd~~~~~~~~~~~~~~~~~ 159 (416)
T 2pm9_A 90 -SLELYSTNEANNAINSMARFS-NHSSSV------KTVKFNAKQDNVLASGGNNGEIF--IWDMNKCTESPSNYTPLTPG 159 (416)
T ss_dssp -CEEEECCSSTTSCCCEEEECC-CSSSCC------CEEEECSSSTTBEEEECSSSCEE--BCBTTTTSSCTTTCCCBCCC
T ss_pred -eEEEeecccccccccchhhcc-CCccce------EEEEEcCCCCCEEEEEcCCCeEE--EEECCCCccccccccccccc
Confidence 355662111 11222221 222233 78999999 77777776655432 34322222 11 1
Q ss_pred CCcCCCCCCCcceeeCCccc-ccCCccCceEEEEEccCCceEeccCCCC-----CCccceEEEeeCCCCCccEEEEEeec
Q 003886 246 SDKDCNSWKGQGDWEEDWGE-TYAGKRQPSLFVININSGEVQAVKGIPK-----SLSVGQVVWAPLNEGLHQYLVFVGWS 319 (789)
Q Consensus 246 ~~~~~~~~~~~~~~~~d~g~-~~~~~~~~~l~v~d~~~g~~~~l~~~~~-----~~~~~~~~wSPDg~~~~~~l~f~~~~ 319 (789)
....+........|.++.+. .+++..+..|.+||+.+++......... ...+..++|+|||+. +++++..
T Consensus 160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~l~~~~~ 235 (416)
T 2pm9_A 160 QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST----RVATATG 235 (416)
T ss_dssp CSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT----EEEEEEC
T ss_pred cccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC----EEEEEEC
Confidence 11234444556678887433 3445567889999999887654421221 456789999999976 6666532
Q ss_pred CCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCC-CCeeecC-CCCCccCcceecC-CCCEEEEEecCCCCC
Q 003886 320 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLT-ESISSAFFPRFSP-DGKFLVFLSAKSSVD 396 (789)
Q Consensus 320 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~Lt-~~~~~~~~p~~Sp-DG~~la~~s~~~~~~ 396 (789)
.. ....|+++|+. .. .....+. .+...+...+||| ||+.|+..+.+.
T Consensus 236 d~-----------~~~~i~~~d~~----------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg--- 285 (416)
T 2pm9_A 236 SD-----------NDPSILIWDLR----------------NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN--- 285 (416)
T ss_dssp CS-----------SSCCCCEEETT----------------STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSS---
T ss_pred CC-----------CCceEEEEeCC----------------CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCC---
Confidence 21 11257788872 21 2334455 5667788999999 899888776542
Q ss_pred CCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECC
Q 003886 397 SGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 476 (789)
Q Consensus 397 ~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~ 476 (789)
.|++||+.+++.... + .. ....+..+.|+||+..+++++..++...|| |+.
T Consensus 286 --------~v~~wd~~~~~~~~~---------~-~~---------~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw--~~~ 336 (416)
T 2pm9_A 286 --------TVLLWNPESAEQLSQ---------F-PA---------RGNWCFKTKFAPEAPDLFACASFDNKIEVQ--TLQ 336 (416)
T ss_dssp --------EEEEECSSSCCEEEE---------E-EC---------SSSCCCCEEECTTCTTEEEECCSSSEEEEE--ESC
T ss_pred --------CEEEeeCCCCcccee---------e-cC---------CCCceEEEEECCCCCCEEEEEecCCcEEEE--Ecc
Confidence 599999877543211 0 00 012356788999995466666666666665 444
Q ss_pred CCc
Q 003886 477 SGE 479 (789)
Q Consensus 477 tg~ 479 (789)
+++
T Consensus 337 ~~~ 339 (416)
T 2pm9_A 337 NLT 339 (416)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-12 Score=134.96 Aligned_cols=279 Identities=9% Similarity=0.010 Sum_probs=170.1
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
.+..++|||||+.+++....+ .+ ..+......+..... ...+.| ..++|+|||+.|+... +.. ..
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~----~~-~~~~~~~~~~~~~~~-~h~~~v------~~~~~~~~~~~l~~~~-dg~--i~ 75 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPD----AL-IGPGIPRHARQINTL-NHGEVV------CAVTISNPTRHVYTGG-KGC--VK 75 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTT----SS-SSTTCCSEEEEEEEE-CCSSCC------CEEEECSSSSEEEEEC-BSE--EE
T ss_pred ceeEEEECCCCCEEEeecCCC----cE-eccccCCccccceec-cCCCce------EEEEEecCCcEEEEcC-CCe--EE
Confidence 477899999999998765433 11 223222222222211 112223 7899999999999876 432 22
Q ss_pred CccCCCCCCCCCCc-----CCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC-CCCCCccceEEEeeCCCC
Q 003886 235 TFSLGSTKGGSSDK-----DCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 235 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~-~~~~~~~~~~~wSPDg~~ 308 (789)
.|+........... .+........|.++....+.+..+..|.+||+.+++...... ......+..+.|+||++.
T Consensus 76 iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (337)
T 1gxr_A 76 VWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV 155 (337)
T ss_dssp EEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSE
T ss_pred EEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCE
Confidence 34432222221111 233344456788876555666667899999999887322210 223345678999999987
Q ss_pred CccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC-CeeecCCCCCccCcceecCCCCEEE
Q 003886 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 309 ~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~SpDG~~la 387 (789)
|+..+ ....|+++|+ .++ ....+..+...+....|+|||+.|+
T Consensus 156 ----l~~~~---------------~dg~v~~~d~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 199 (337)
T 1gxr_A 156 ----CFSCC---------------SDGNIAVWDL-----------------HNQTLVRQFQGHTDGASCIDISNDGTKLW 199 (337)
T ss_dssp ----EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred ----EEEEe---------------CCCcEEEEeC-----------------CCCceeeeeecccCceEEEEECCCCCEEE
Confidence 66655 2336888888 333 3455666667788999999999988
Q ss_pred EEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCe
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 467 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 467 (789)
..+.+. .|++||+.++..... ... ...+..+.|+|||+.|++. ..++
T Consensus 200 ~~~~dg-----------~i~~~d~~~~~~~~~----------~~~----------~~~v~~~~~s~~~~~l~~~-~~~~- 246 (337)
T 1gxr_A 200 TGGLDN-----------TVRSWDLREGRQLQQ----------HDF----------TSQIFSLGYCPTGEWLAVG-MESS- 246 (337)
T ss_dssp EEETTS-----------EEEEEETTTTEEEEE----------EEC----------SSCEEEEEECTTSSEEEEE-ETTS-
T ss_pred EEecCC-----------cEEEEECCCCceEee----------ecC----------CCceEEEEECCCCCEEEEE-cCCC-
Confidence 776442 599999877543211 000 0123467899999977544 4344
Q ss_pred EEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 468 QVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 468 ~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
.++.+|+.+++...+...........++++++.++....+ ..+.+.++..
T Consensus 247 -~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~~~~~~ 296 (337)
T 1gxr_A 247 -NVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD----NLLNAWRTPY 296 (337)
T ss_dssp -CEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETT----SEEEEEETTT
T ss_pred -cEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCC----CcEEEEECCC
Confidence 3666688888887776655556667888988876654432 2466666543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.6e-12 Score=143.70 Aligned_cols=264 Identities=18% Similarity=0.151 Sum_probs=164.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
..+...+|+|||+.|+.....+ .+.+| ..++..+... +..+.| ..++|+|||+.|+..+.+...+
T Consensus 263 ~~v~~v~~~~d~~~l~~~~~d~-----~i~~w~~~~~~~~~~~---~h~~~v------~~~~~~~~~~~l~t~~~d~~i~ 328 (577)
T 2ymu_A 263 SSVNGVAFRPDGQTIASASDDK-----TVKLWNRNGQLLQTLT---GHSSSV------WGVAFSPDGQTIASASDDKTVK 328 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEETTSCEEEEEC---CCSSCE------EEEEECTTSSEEEEEETTSCEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCC-----EEEEEeCCCcEEEEEe---cCCCCe------EEEEECCCCCEEEEEeCCCeEE
Confidence 4577899999999998876654 35666 4444444332 222222 6899999999999887665432
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (789)
.|+... ........+........|.++......+.....|.+||..+.....+ ......+..++|+|||+.
T Consensus 329 --~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~--~~~~~~v~~~~~s~dg~~---- 399 (577)
T 2ymu_A 329 --LWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL--TGHSSSVRGVAFSPDGQT---- 399 (577)
T ss_dssp --EEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEE--ECCSSCEEEEEECTTSSC----
T ss_pred --EEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEe--cCCCCCeEEEEECCCCCE----
Confidence 233211 11111112222223456777755555566678899999766555666 233456778999999998
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
|+..+. +..|.++|. .+.....+..+...+...+|||||+.|+..+.+
T Consensus 400 l~~~~~---------------d~~v~~~~~-----------------~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d 447 (577)
T 2ymu_A 400 IASASD---------------DKTVKLWNR-----------------NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDD 447 (577)
T ss_dssp EEEEET---------------TSEEEEECT-----------------TCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEEEeC---------------CCEEEEEeC-----------------CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCC
Confidence 887662 235777776 455566777777778889999999999877754
Q ss_pred CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (789)
. .|.+||..+.....+.. ....+..+.|+|||+.| +++..++...||
T Consensus 448 ~-----------~v~~w~~~~~~~~~~~~--------------------~~~~v~~~~~spd~~~l-as~~~d~~i~iw- 494 (577)
T 2ymu_A 448 K-----------TVKLWNRNGQLLQTLTG--------------------HSSSVRGVAFSPDGQTI-ASASDDKTVKLW- 494 (577)
T ss_dssp S-----------EEEEEETTSCEEEEEEC--------------------CSSCEEEEEECTTSCEE-EEEETTSEEEEE-
T ss_pred C-----------EEEEEECCCCEEEEEcC--------------------CCCCEEEEEEcCCCCEE-EEEeCCCEEEEE-
Confidence 3 58888864321111100 01124467899999865 455556655555
Q ss_pred EECCCCcEEEecCCCCCceeEEeeecCCEEEEEE
Q 003886 473 VNVSSGELLRITPAESNFSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 473 ~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ 506 (789)
|..+..++.+......+....|+++|+.|+...
T Consensus 495 -~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 527 (577)
T 2ymu_A 495 -NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 527 (577)
T ss_dssp -ETTSCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred -cCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEE
Confidence 664444455554444555668899998776544
|
| >2xmz_A Hydrolase, alpha/beta hydrolase fold family; menaquinone biosynthesis, lyase; 1.94A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.46 E-value=4e-13 Score=138.26 Aligned_cols=102 Identities=17% Similarity=0.257 Sum_probs=78.3
Q ss_pred cEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCcc
Q 003886 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (789)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (789)
|.||++||.+.+ ...|......|++. |.|+++|+|| +|.+.... . . ...++++.+.+..+++. ++.++
T Consensus 17 ~~vvllHG~~~~--~~~~~~~~~~L~~~-~~vi~~Dl~G---~G~S~~~~--~-~-~~~~~~~~~dl~~~l~~--l~~~~ 84 (269)
T 2xmz_A 17 QVLVFLHGFLSD--SRTYHNHIEKFTDN-YHVITIDLPG---HGEDQSSM--D-E-TWNFDYITTLLDRILDK--YKDKS 84 (269)
T ss_dssp EEEEEECCTTCC--GGGGTTTHHHHHTT-SEEEEECCTT---STTCCCCT--T-S-CCCHHHHHHHHHHHHGG--GTTSE
T ss_pred CeEEEEcCCCCc--HHHHHHHHHHHhhc-CeEEEecCCC---CCCCCCCC--C-C-ccCHHHHHHHHHHHHHH--cCCCc
Confidence 469999997764 45676677778765 9999999998 55544211 1 0 23566777766666665 45678
Q ss_pred EEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 673 v~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
+.|+|||+||.+++.+|.++|++++++|+.++..
T Consensus 85 ~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~~ 118 (269)
T 2xmz_A 85 ITLFGYSMGGRVALYYAINGHIPISNLILESTSP 118 (269)
T ss_dssp EEEEEETHHHHHHHHHHHHCSSCCSEEEEESCCS
T ss_pred EEEEEECchHHHHHHHHHhCchheeeeEEEcCCc
Confidence 9999999999999999999999999999998754
|
| >3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase, catalysis, protonation state, AB initio calculations, substrate bindin; 1.05A {Hevea brasiliensis} SCOP: c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A 3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A 7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A 1dwp_A ... | Back alignment and structure |
|---|
Probab=99.45 E-value=7e-13 Score=135.66 Aligned_cols=103 Identities=18% Similarity=0.195 Sum_probs=79.1
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCC-C
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN-P 670 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d-~ 670 (789)
.|.||++||.+++ ...|......|+++||.|+++|+|| +|.+.... .....+++..+.+..+++. ++ .
T Consensus 3 ~~~vvllHG~~~~--~~~w~~~~~~L~~~g~~via~Dl~G---~G~S~~~~----~~~~~~~~~a~dl~~~l~~--l~~~ 71 (257)
T 3c6x_A 3 FAHFVLIHTICHG--AWIWHKLKPLLEALGHKVTALDLAA---SGVDPRQI----EEIGSFDEYSEPLLTFLEA--LPPG 71 (257)
T ss_dssp CCEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTT---STTCSCCG----GGCCSHHHHTHHHHHHHHT--SCTT
T ss_pred CCcEEEEcCCccC--cCCHHHHHHHHHhCCCEEEEeCCCC---CCCCCCCc----ccccCHHHHHHHHHHHHHh--cccc
Confidence 3679999997754 5568778889999999999999998 55543110 1123466666666666665 32 4
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
+++.|+||||||++++.++.++|++++++|+.++.
T Consensus 72 ~~~~lvGhSmGG~va~~~a~~~p~~v~~lVl~~~~ 106 (257)
T 3c6x_A 72 EKVILVGESCGGLNIAIAADKYCEKIAAAVFHNSV 106 (257)
T ss_dssp CCEEEEEEETHHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred CCeEEEEECcchHHHHHHHHhCchhhheEEEEecc
Confidence 68999999999999999999999999999998764
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-11 Score=136.29 Aligned_cols=262 Identities=12% Similarity=0.036 Sum_probs=150.2
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEEec---CCCccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEFHV---PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~~~---~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
.+..++|||||++|+++...+ +.-.+|.+.. .++..+.+.. ...+ ..+.|+|||+.|+....
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~v----------~~~~~sp~~~~l~~~~~--- 169 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSD-KSLLVFDVDKTSKNVLKLRKRFCFSKRP----------NAISIAEDDTTVIIADK--- 169 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGG-TEEEEEEECSSSSSCEEEEEEEECSSCE----------EEEEECTTSSEEEEEET---
T ss_pred ceEEEEEcCCCCEEEEEECCC-CeEEEEECcCCCCceeeeeecccCCCCc----------eEEEEcCCCCEEEEEeC---
Confidence 478899999999986555432 3333333331 4555554432 2222 68999999999988633
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEe--ccC-CCCCCccceEEEeeC--
Q 003886 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA--VKG-IPKSLSVGQVVWAPL-- 305 (789)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~--l~~-~~~~~~~~~~~wSPD-- 305 (789)
...+++|++.+++... +.. ......+..++|+||
T Consensus 170 -----------------------------------------~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~ 208 (450)
T 2vdu_B 170 -----------------------------------------FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSD 208 (450)
T ss_dssp -----------------------------------------TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTT
T ss_pred -----------------------------------------CCcEEEEecCCcccccccceeeecccCceEEEEEcCCCC
Confidence 2568899988776542 100 112345778999999
Q ss_pred -CCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eee-cCCCCCccCcceecCC
Q 003886 306 -NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVN-LTESISSAFFPRFSPD 382 (789)
Q Consensus 306 -g~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~-Lt~~~~~~~~p~~SpD 382 (789)
++. |+..+ ....|+++|+ .++. ... +..+...+..++|| |
T Consensus 209 ~~~~----l~s~~---------------~d~~i~vwd~-----------------~~~~~~~~~~~~h~~~v~~~~~s-d 251 (450)
T 2vdu_B 209 GHQF----IITSD---------------RDEHIKISHY-----------------PQCFIVDKWLFGHKHFVSSICCG-K 251 (450)
T ss_dssp SCEE----EEEEE---------------TTSCEEEEEE-----------------SCTTCEEEECCCCSSCEEEEEEC-S
T ss_pred CCcE----EEEEc---------------CCCcEEEEEC-----------------CCCceeeeeecCCCCceEEEEEC-C
Confidence 776 65554 2236888887 3333 334 55667778999999 9
Q ss_pred CCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccC--CCCC----ccccccCCCCCccccCCC
Q 003886 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAE--GDCF----PGLYSSSILSNPWLSDGC 456 (789)
Q Consensus 383 G~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~--~~~f----~g~~~~~~~~~~ws~Dg~ 456 (789)
|++|+..+.+ ..|.+||+.++...........+..+..... ...| .......+..+.|+||++
T Consensus 252 ~~~l~s~~~d-----------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~ 320 (450)
T 2vdu_B 252 DYLLLSAGGD-----------DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP 320 (450)
T ss_dssp TTEEEEEESS-----------SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSS
T ss_pred CCEEEEEeCC-----------CeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCC
Confidence 9999877744 2699999988654211110000000000000 0000 000112345678999999
Q ss_pred EEEEEEEeCCeEEEEEE-ECCCCcEEEe--cCCCCCceeEEeeecCCEEEEEEeCCCCCC------eEEEEeec
Q 003886 457 TMLLSSIWGSSQVIISV-NVSSGELLRI--TPAESNFSWSLLTLDGDNIIAVSSSPVDVP------QVKYGYFV 521 (789)
Q Consensus 457 ~l~~~~~~~~~~~l~~~-dl~tg~~~~l--t~~~~~~~~~~~s~dg~~l~~~~ss~~~p~------~i~~~~~~ 521 (789)
.|++....++...||.+ +..+++++.+ ......+....+++ +.++++..+...|. .+|.++..
T Consensus 321 ~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~--~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 321 FVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHN--DEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEET--TEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred EEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecC--CcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 88766546676777766 3333333322 22223333345555 56777777766664 67766644
|
| >3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-13 Score=140.21 Aligned_cols=114 Identities=11% Similarity=0.169 Sum_probs=86.5
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~ 651 (789)
+|..++....- ..|+||++||++.+ ...|......|+++ |.|+++|+|| +|.+... .....
T Consensus 18 ~g~~l~~~~~g--------~~~~vv~lHG~~~~--~~~~~~~~~~L~~~-~~vi~~D~~G---~G~S~~~-----~~~~~ 78 (301)
T 3kda_A 18 DGVKLHYVKGG--------QGPLVMLVHGFGQT--WYEWHQLMPELAKR-FTVIAPDLPG---LGQSEPP-----KTGYS 78 (301)
T ss_dssp TTEEEEEEEEE--------SSSEEEEECCTTCC--GGGGTTTHHHHTTT-SEEEEECCTT---STTCCCC-----SSCSS
T ss_pred CCeEEEEEEcC--------CCCEEEEECCCCcc--hhHHHHHHHHHHhc-CeEEEEcCCC---CCCCCCC-----CCCcc
Confidence 67777755442 35789999998765 56677778888888 9999999998 5554322 12334
Q ss_pred HHHHHHHHHHHHHcCCCCCcc-EEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 652 VNDVLTAIDHVIDMGLANPSK-VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~r-v~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
++++.+.+..+++. ++.++ +.|+|||+||.+++.++.++|++++++|+.+|..
T Consensus 79 ~~~~~~~l~~~l~~--l~~~~p~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 132 (301)
T 3kda_A 79 GEQVAVYLHKLARQ--FSPDRPFDLVAHDIGIWNTYPMVVKNQADIARLVYMEAPI 132 (301)
T ss_dssp HHHHHHHHHHHHHH--HCSSSCEEEEEETHHHHTTHHHHHHCGGGEEEEEEESSCC
T ss_pred HHHHHHHHHHHHHH--cCCCccEEEEEeCccHHHHHHHHHhChhhccEEEEEccCC
Confidence 66666666666654 34567 9999999999999999999999999999999853
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-11 Score=131.46 Aligned_cols=244 Identities=14% Similarity=0.087 Sum_probs=133.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEec---CCCccccccCCCcccceeecCCCCEEEEEeecC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHV---PQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~---~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~ 229 (789)
.....++|||||+ |+++...+ +...++.+. .+++.+.+... .... ..++|||||++|++....
T Consensus 40 ~~p~~~a~spdg~-l~~~~~~~-~~~~v~~~~~~~g~~~~~~~~~~~~~~p----------~~~a~spdg~~l~~~~~~- 106 (347)
T 3hfq_A 40 QNPTYLALSAKDC-LYSVDKED-DEGGIAAWQIDGQTAHKLNTVVAPGTPP----------AYVAVDEARQLVYSANYH- 106 (347)
T ss_dssp SCCCCEEECTTCE-EEEEEEET-TEEEEEEEEEETTEEEEEEEEEEESCCC----------SEEEEETTTTEEEEEETT-
T ss_pred CCcceEEEccCCe-EEEEEecC-CCceEEEEEecCCcEEEeeeeecCCCCC----------EEEEECCCCCEEEEEeCC-
Confidence 3456789999999 76665431 223454444 45555444432 1222 679999999988876432
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEcc-CCceEeccC--CCC--------CCccc
Q 003886 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEVQAVKG--IPK--------SLSVG 298 (789)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~g~~~~l~~--~~~--------~~~~~ 298 (789)
...|.+|++. +|+.+.+.. ..+ ...+.
T Consensus 107 ------------------------------------------~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~ 144 (347)
T 3hfq_A 107 ------------------------------------------KGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIH 144 (347)
T ss_dssp ------------------------------------------TTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEE
T ss_pred ------------------------------------------CCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCce
Confidence 2456777763 444433310 110 11345
Q ss_pred eEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeec---CCC-CCcc
Q 003886 299 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL---TES-ISSA 374 (789)
Q Consensus 299 ~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L---t~~-~~~~ 374 (789)
.++|+|||+ +++... ....|+++++. .++....+ ... ....
T Consensus 145 ~~~~spdg~-----l~v~~~--------------~~~~v~~~~~~----------------~~g~~~~~~~~~~~~g~~p 189 (347)
T 3hfq_A 145 YTDLTPDNR-----LAVIDL--------------GSDKVYVYNVS----------------DAGQLSEQSVLTMEAGFGP 189 (347)
T ss_dssp EEEECTTSC-----EEEEET--------------TTTEEEEEEEC----------------TTSCEEEEEEEECCTTCCE
T ss_pred EEEECCCCc-----EEEEeC--------------CCCEEEEEEEC----------------CCCcEEEeeeEEcCCCCCC
Confidence 689999998 444331 12257777772 13433322 111 1234
Q ss_pred CcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC--CCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccc
Q 003886 375 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT--NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 452 (789)
Q Consensus 375 ~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~--~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws 452 (789)
...+|||||++|++..... ..+.+|+++. +.... +..+...+. .+.+. .....+.|+
T Consensus 190 ~~~~~spdg~~l~v~~~~~----------~~v~v~~~~~~~g~~~~-------~~~~~~~~~--~~~~~--~~~~~i~~s 248 (347)
T 3hfq_A 190 RHLVFSPDGQYAFLAGELS----------SQIASLKYDTQTGAFTQ-------LGIVKTIPA--DYTAH--NGAAAIRLS 248 (347)
T ss_dssp EEEEECTTSSEEEEEETTT----------TEEEEEEEETTTTEEEE-------EEEEESSCT--TCCSC--CEEEEEEEC
T ss_pred ceEEECCCCCEEEEEeCCC----------CEEEEEEecCCCCceEE-------eeeeeecCC--CCCCC--CcceeEEEC
Confidence 5679999999887765433 3566676653 22110 111110110 01000 012357899
Q ss_pred cCCCEEEEEEEeCCeEEEEEEECCCCcEEEec---CCCCCceeEEeeecCCEEEEEEeCC
Q 003886 453 SDGCTMLLSSIWGSSQVIISVNVSSGELLRIT---PAESNFSWSLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 453 ~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt---~~~~~~~~~~~s~dg~~l~~~~ss~ 509 (789)
|||++||++....+...+|.++. +|+.+.+. ..........|++||++|++.....
T Consensus 249 pdG~~l~v~~~~~~~v~v~~~~~-~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 307 (347)
T 3hfq_A 249 HDGHFLYVSNRGYNTLAVFAVTA-DGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT 307 (347)
T ss_dssp TTSCEEEEEEETTTEEEEEEECG-GGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT
T ss_pred CCCCEEEEEeCCCCEEEEEEECC-CCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC
Confidence 99999988766666666776653 34444332 2122234568999999887666543
|
| >2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase fold, structural genomics, structural G of pathogenic protozoa consortium; 2.20A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-12 Score=139.96 Aligned_cols=106 Identities=15% Similarity=0.222 Sum_probs=78.5
Q ss_pred CCcEEEEEcCCCCCCCc-hhhHHHHHHHHHCCcEEEEEcCCC-CCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 003886 591 CDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRG-SLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~-~~~~~~~~~la~~Gy~V~~~d~rG-s~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (789)
..|+||++||.+.+... ..|......| +.||.|+++|+|. ..|+|.+.. ....+|+.+.++++.+. +
T Consensus 37 ~~~~vvllHG~~~~~~~~~~~~~l~~~L-~~g~~Vi~~Dl~~D~~G~G~S~~--------~~~~~d~~~~~~~l~~~--l 105 (335)
T 2q0x_A 37 ARRCVLWVGGQTESLLSFDYFTNLAEEL-QGDWAFVQVEVPSGKIGSGPQDH--------AHDAEDVDDLIGILLRD--H 105 (335)
T ss_dssp SSSEEEEECCTTCCTTCSTTHHHHHHHH-TTTCEEEEECCGGGBTTSCSCCH--------HHHHHHHHHHHHHHHHH--S
T ss_pred CCcEEEEECCCCccccchhHHHHHHHHH-HCCcEEEEEeccCCCCCCCCccc--------cCcHHHHHHHHHHHHHH--c
Confidence 46889999996654222 2345556667 7899999996531 133665432 12367888889988875 5
Q ss_pred CCccEEEEEcCccHHHHHHHHH--hCCCceeEEEEeCCccc
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIG--QAPDKFVAAAARNPLCN 707 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~--~~p~~~~a~v~~~pv~~ 707 (789)
+.+++.|+||||||++++.++. .+|++++++|+.+|..+
T Consensus 106 ~~~~~~LvGhSmGG~iAl~~A~~~~~p~rV~~lVL~~~~~~ 146 (335)
T 2q0x_A 106 CMNEVALFATSTGTQLVFELLENSAHKSSITRVILHGVVCD 146 (335)
T ss_dssp CCCCEEEEEEGGGHHHHHHHHHHCTTGGGEEEEEEEEECCC
T ss_pred CCCcEEEEEECHhHHHHHHHHHhccchhceeEEEEECCccc
Confidence 6789999999999999999998 57999999999988653
|
| >1wom_A RSBQ, sigma factor SIGB regulation protein RSBQ; alpha/beta hydrolase, signaling protein; 2.50A {Bacillus subtilis} PDB: 1wpr_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-13 Score=139.19 Aligned_cols=187 Identities=16% Similarity=0.177 Sum_probs=110.2
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.|.||++||.+.+ ...|......|++ +|.|+++|+|| +|.+...... ......+++..+.+..+++. ++.+
T Consensus 20 ~~~vvllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G---~G~S~~~~~~-~~~~~~~~~~a~dl~~~l~~--l~~~ 90 (271)
T 1wom_A 20 KASIMFAPGFGCD--QSVWNAVAPAFEE-DHRVILFDYVG---SGHSDLRAYD-LNRYQTLDGYAQDVLDVCEA--LDLK 90 (271)
T ss_dssp SSEEEEECCTTCC--GGGGTTTGGGGTT-TSEEEECCCSC---CSSSCCTTCC-TTGGGSHHHHHHHHHHHHHH--TTCS
T ss_pred CCcEEEEcCCCCc--hhhHHHHHHHHHh-cCeEEEECCCC---CCCCCCCccc-ccccccHHHHHHHHHHHHHH--cCCC
Confidence 3789999996654 4566666667765 69999999998 5554321100 01112455555555555554 3457
Q ss_pred cEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhh----hhcCCCCCcc-hhhhhccC-------ccccccCCC-C
Q 003886 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL----MVGTTDIPDW-CYVESYGS-------KGKDSFTES-P 738 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~----~~~~~~~~~~-~~~~~~~~-------~~~~~~~~~-~ 738 (789)
++.|+|||+||.+++.++.++|++++++|+.++...... +......... .....+.. ......... .
T Consensus 91 ~~~lvGhS~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (271)
T 1wom_A 91 ETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPD 170 (271)
T ss_dssp CEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBEETTTEECSBCHHHHHHHHHHHHHCHHHHHHHHHHHHHCCTT
T ss_pred CeEEEEeCHHHHHHHHHHHhCHHhhcceEEEcCCCcCCCCCchhccCCCHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999999999999987521100 0000000000 00000000 000000000 0
Q ss_pred ChhhHHH-------------------HHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 739 SVEDLTR-------------------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 739 ~~~~~~~-------------------~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
..+..+. ....+....+.++++|+|+++|++|..+|++.+..+.+.+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~~~ 238 (271)
T 1wom_A 171 RPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHLPY 238 (271)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHHHHHHHSCCCHHHHTTCCSCEEEEEEETCSSSCHHHHHHHHHHSSS
T ss_pred chHHHHHHHHHHhcCCcHHHHHHHHHHhCcchHHhccccCCCEEEEEcCCCCcCCHHHHHHHHHHCCC
Confidence 0000000 011122234678999999999999999999999999888765
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-12 Score=136.18 Aligned_cols=235 Identities=14% Similarity=0.111 Sum_probs=150.6
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEec-CCCccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~-~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
..+....|+|++..++..+... .+.+|+ .++..+.+.. ...+ ..+.|||||+.|+..+.+..
T Consensus 81 ~~v~~~~~~~~~~~l~s~s~D~-----~i~lWd~~~~~~~~~~~~~~~~~----------~~~~~spdg~~l~~g~~dg~ 145 (321)
T 3ow8_A 81 LGVVSVDISHTLPIAASSSLDA-----HIRLWDLENGKQIKSIDAGPVDA----------WTLAFSPDSQYLATGTHVGK 145 (321)
T ss_dssp SCEEEEEECSSSSEEEEEETTS-----EEEEEETTTTEEEEEEECCTTCC----------CCEEECTTSSEEEEECTTSE
T ss_pred CCEEEEEECCCCCEEEEEeCCC-----cEEEEECCCCCEEEEEeCCCccE----------EEEEECCCCCEEEEEcCCCc
Confidence 4588899999999998776554 566773 4444433332 1122 67999999999998765543
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003886 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
.. .|.............+........|.++.....++..+..|.+||+.+++..... ......+..++|+|||+.
T Consensus 146 v~--i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~spd~~~-- 220 (321)
T 3ow8_A 146 VN--IFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL-EGHAMPIRSLTFSPDSQL-- 220 (321)
T ss_dssp EE--EEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCCCEEEECTTSCE--
T ss_pred EE--EEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE-cccCCceeEEEEcCCCCE--
Confidence 21 2222211111111222333445678888666666667889999999998765431 223446789999999997
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEe
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s 390 (789)
|+..+ .+..|.++|+. .......+..+...+...+|+|||+.|+..+
T Consensus 221 --l~s~s---------------~dg~i~iwd~~----------------~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s 267 (321)
T 3ow8_A 221 --LVTAS---------------DDGYIKIYDVQ----------------HANLAGTLSGHASWVLNVAFCPDDTHFVSSS 267 (321)
T ss_dssp --EEEEC---------------TTSCEEEEETT----------------TCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred --EEEEc---------------CCCeEEEEECC----------------CcceeEEEcCCCCceEEEEECCCCCEEEEEe
Confidence 66655 22368888872 2334456777777788999999999988777
Q ss_pred cCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEE
Q 003886 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (789)
Q Consensus 391 ~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (789)
.+. .|.+||+.++.......+. ...+..+.|+|||+.| +++..++...|
T Consensus 268 ~D~-----------~v~iwd~~~~~~~~~~~~h-------------------~~~v~~v~~s~~g~~l-~s~~~d~~i~v 316 (321)
T 3ow8_A 268 SDK-----------SVKVWDVGTRTCVHTFFDH-------------------QDQVWGVKYNGNGSKI-VSVGDDQEIHI 316 (321)
T ss_dssp TTS-----------CEEEEETTTTEEEEEECCC-------------------SSCEEEEEECTTSSEE-EEEETTCCEEE
T ss_pred CCC-----------cEEEEeCCCCEEEEEEcCC-------------------CCcEEEEEECCCCCEE-EEEeCCCeEEE
Confidence 543 5899998765432110000 0124467899999866 56666777777
Q ss_pred EE
Q 003886 471 IS 472 (789)
Q Consensus 471 ~~ 472 (789)
|.
T Consensus 317 wd 318 (321)
T 3ow8_A 317 YD 318 (321)
T ss_dssp EE
T ss_pred Ee
Confidence 64
|
| >2rau_A Putative esterase; NP_343859.1, putative lipase, structural genomics, joint CEN structural genomics, JCSG; HET: PG4 UNL; 1.85A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-13 Score=148.82 Aligned_cols=108 Identities=13% Similarity=0.191 Sum_probs=80.1
Q ss_pred CCcEEEEEcCCCCCCCchhhH----------------HHHHHHHHCCcEEEEEcCCCCCCCCchhhccC--CC---CCC-
Q 003886 591 CDPLIVVLHGGPHSVSLSSYS----------------KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL--PG---KVG- 648 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~----------------~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~--~~---~~~- 648 (789)
+.|+||++||++++ ...|. .....|+++||.|+++|+|| +|.+..... .+ .+.
T Consensus 49 ~~~~vv~~hG~~~~--~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~G---~G~s~~~~~~~~~~~~~~~~ 123 (354)
T 2rau_A 49 GNDAVLILPGTWSS--GEQLVTISWNGVHYTIPDYRKSIVLYLARNGFNVYTIDYRT---HYVPPFLKDRQLSFTANWGW 123 (354)
T ss_dssp CEEEEEEECCTTCC--HHHHHHSEETTEECSCCCGGGCHHHHHHHTTEEEEEEECGG---GGCCTTCCGGGGGGGTTCSH
T ss_pred CCCEEEEECCCCCC--ccccccccccccccccccchhhHHHHHHhCCCEEEEecCCC---CCCCCcccccccccccCCcH
Confidence 56899999998765 33222 56788999999999999998 333321100 00 111
Q ss_pred cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC-CCceeEEEEeCCc
Q 003886 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPL 705 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~-p~~~~a~v~~~pv 705 (789)
...++|+.++++++.++ .+.++++++|||+||++++.++.++ |++++++|+.++.
T Consensus 124 ~~~~~d~~~~~~~l~~~--~~~~~~~l~G~S~Gg~~a~~~a~~~~p~~v~~lvl~~~~ 179 (354)
T 2rau_A 124 STWISDIKEVVSFIKRD--SGQERIYLAGESFGGIAALNYSSLYWKNDIKGLILLDGG 179 (354)
T ss_dssp HHHHHHHHHHHHHHHHH--HCCSSEEEEEETHHHHHHHHHHHHHHHHHEEEEEEESCS
T ss_pred HHHHHHHHHHHHHHHHh--cCCceEEEEEECHhHHHHHHHHHhcCccccceEEEeccc
Confidence 12257888888888776 4568999999999999999999998 9999999999654
|
| >3d59_A Platelet-activating factor acetylhydrolase; secreted protein, alpha/beta-hydrolase-fold, LDL-bound, lipoprotein associated phospholipase A2, LP-PLA2; 1.50A {Homo sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-13 Score=148.39 Aligned_cols=141 Identities=21% Similarity=0.211 Sum_probs=100.3
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCc--------------hhhccCCCCCCc----
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE--------------EALQSLPGKVGS---- 649 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~--------------~~~~~~~~~~~~---- 649 (789)
.++++|+||++||+++. ...|...++.|+++||.|+++|+||.++... .+.. .....+.
T Consensus 94 ~~~~~P~Vv~~HG~~~~--~~~~~~~a~~La~~Gy~V~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~ 170 (383)
T 3d59_A 94 PGEKYPLVVFSHGLGAF--RTLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDKSWLY-LRTLKQEEETH 170 (383)
T ss_dssp CSSCEEEEEEECCTTCC--TTTTHHHHHHHHHTTCEEEEECCCSSCSSEEEECSSHHHHHHTCCEEEE-CCCCCHHHHHH
T ss_pred cCCCCCEEEEcCCCCCC--chHHHHHHHHHHhCceEEEEeccCCCCccceeecCCccccccCCceeee-ccccCcccchh
Confidence 34689999999998764 4567778899999999999999998543210 0000 0000011
Q ss_pred -------ccHHHHHHHHHHHHH--------------------cCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEe
Q 003886 650 -------QDVNDVLTAIDHVID--------------------MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR 702 (789)
Q Consensus 650 -------~~~~D~~~~i~~l~~--------------------~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~ 702 (789)
...+|+.++++++.+ +..+|.+||+++|||+||++++.++.+.+ +++++|+.
T Consensus 171 ~~~~~~~~~~~d~~~~l~~l~~~~~~~~~~~~~~~~~d~~~~~~~~d~~~i~l~G~S~GG~~a~~~a~~~~-~v~a~v~~ 249 (383)
T 3d59_A 171 IRNEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVIQTLSEDQ-RFRCGIAL 249 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSCCSCCGGGGTTCEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEE
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccchhhhhccccccceeEEEEChhHHHHHHHHhhCC-CccEEEEe
Confidence 114688889999876 45578899999999999999999988755 79999998
Q ss_pred CCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCC
Q 003886 703 NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRV 773 (789)
Q Consensus 703 ~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v 773 (789)
+|... +... ..+.++++|+|++||++|..+
T Consensus 250 ~~~~~------------------------------p~~~-----------~~~~~i~~P~Lii~g~~D~~~ 279 (383)
T 3d59_A 250 DAWMF------------------------------PLGD-----------EVYSRIPQPLFFINSEYFQYP 279 (383)
T ss_dssp SCCCT------------------------------TCCG-----------GGGGSCCSCEEEEEETTTCCH
T ss_pred CCccC------------------------------CCch-----------hhhccCCCCEEEEecccccch
Confidence 87421 0000 123577899999999999854
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.3e-12 Score=132.10 Aligned_cols=235 Identities=13% Similarity=0.172 Sum_probs=161.4
Q ss_pred eCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCC
Q 003886 161 PSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLG 239 (789)
Q Consensus 161 ~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~ 239 (789)
++++|++|+|....+ ..+++.+. ++...++++... .--+++||++|+|+.....+...
T Consensus 21 ~~~~g~~iy~~n~~d--~~~ly~~~~dg~~~~~l~~~~--------------~~~i~~~g~~Iyy~~~~~~~~~~----- 79 (302)
T 3s25_A 21 FCESDGEVFFSNTND--NGRLYAMNIDGSNIHKLSNDT--------------AMYINADKNYVYYVRNNNQKITS----- 79 (302)
T ss_dssp EEEETTEEEEEEGGG--TTEEEEEETTSCSCEEEEEEE--------------EEEEEECSSEEEEEEECC----------
T ss_pred EEEeCCEEEEEeCCC--CceEEEEcCCCCCCEEccCCc--------------eeeEEEcCCEEEEEECCCCcccc-----
Confidence 568999999986542 35799999 455666666531 23468999999999875421100
Q ss_pred CCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeec
Q 003886 240 STKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (789)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~ 319 (789)
..+....+..|+++++++++.+.|. ... ...|+|+|++ |+|+...
T Consensus 80 -------------------------~~~~~~n~~~Iy~i~~dg~~~~~l~--~~~----~~~~s~~g~~----Iy~~~~~ 124 (302)
T 3s25_A 80 -------------------------QTFFSYDRNSLCRIKRNGHGSTVLD--PDP----CIYASLIGNY----IYYLHYD 124 (302)
T ss_dssp --------------------------CCSSCCSEEEEEEETTSCCCEEEE--CSC----EEEEEEETTE----EEEEEES
T ss_pred -------------------------cceeccCCCeEEEEeCCCCcceEee--cCC----ccEEEEeCCE----EEEEeec
Confidence 0000113468999999999888773 221 2379999999 9998621
Q ss_pred CCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCC
Q 003886 320 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGA 399 (789)
Q Consensus 320 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~ 399 (789)
.. ....||++++ ++...++|+.+.. +.|+|+|+.|+|++..
T Consensus 125 ~~-----------~~~~Iy~~~~-----------------dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g------- 165 (302)
T 3s25_A 125 TQ-----------TATSLYRIRI-----------------DGEEKKKIKNHYL----FTCNTSDRYFYYNNPK------- 165 (302)
T ss_dssp SS-----------SCEEEEEEET-----------------TSCCCEEEESSCC----CCSEEETTEEEEECTT-------
T ss_pred CC-----------CCceEEEEEC-----------------CCCCeEEEeCCCc----eEeeEECCEEEEEeCC-------
Confidence 11 2237999998 6777888887643 5689999999999752
Q ss_pred ccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003886 400 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (789)
Q Consensus 400 ~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~ 479 (789)
..+|++++++++..+.+..+. . ..++.|+++.||++....+ ..|++++++++.
T Consensus 166 ---~~~Iy~~~l~g~~~~~l~~~~----------------------~-~~~~~P~g~~iy~t~~~~~-~~I~~~~ldG~~ 218 (302)
T 3s25_A 166 ---NGQLYRYDTASQSEALFYDCN----------------------C-YKPVVLDDTNVYYMDVNRD-NAIVHVNINNPN 218 (302)
T ss_dssp ---TCCEEEEETTTTEEEEEECSC----------------------E-EEEEEEETTEEEEEEGGGT-TEEEEECSSSCC
T ss_pred ---CceEEEEECCCCCEEEEeCCC----------------------c-cceeeecCCEEEEEEcCCC-cEEEEEECCCCC
Confidence 247999999876543332111 0 1135599999998754433 789999999999
Q ss_pred EEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 480 LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 480 ~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
.+.|+.... ..++++++.|++...... ..|+..++.+.
T Consensus 219 ~~~Lt~~~~----~~~~~~g~~Iy~~~~~~~--~~i~~~~~DG~ 256 (302)
T 3s25_A 219 PVVLTEANI----EHYNVYGSLIFYQRGGDN--PALCVVKNDGT 256 (302)
T ss_dssp CEECSCSCE----EEEEEETTEEEEEECSSS--CEEEEEETTSC
T ss_pred eEEEeCCCc----ceEEECCCEEEEEECCCC--cEEEEEECCCC
Confidence 888875432 458999999987654432 68999988754
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.6e-12 Score=134.11 Aligned_cols=268 Identities=12% Similarity=0.074 Sum_probs=163.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
+.+....|||||++|+..+..+ ...+|+ .++....+... .+. ...+.|||||+.|+..+.+...
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg-----~v~iWd~~~~~~~~~~~~~---~~~------v~~~~~s~~~~~l~s~~~d~~v 121 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDG-----KLIIWDSYTTNKVHAIPLR---SSW------VMTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTT-----EEEEEETTTCCEEEEEECS---SSC------EEEEEECTTSSEEEEEETTCEE
T ss_pred CceEEEEECCCCCEEEEEeCCC-----cEEEEECCCCCcceEeecC---Ccc------EEEEEECCCCCEEEEEeCCCeE
Confidence 4588899999999999877654 567773 33333333321 112 2689999999999987765432
Q ss_pred CCCCccCCCCCCC----CCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003886 232 SKPTFSLGSTKGG----SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (789)
Q Consensus 232 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (789)
. .|+....... .....+........|.++ +..+++..+..|.+||+.+++..... ......+..++|+||++
T Consensus 122 ~--iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~s~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~~~ 197 (340)
T 1got_B 122 S--IYNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTR 197 (340)
T ss_dssp E--EEETTTCSBSCEEEEEEECCSSCEEEEEEEET-TEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSS
T ss_pred E--EEECccCCCcceeEEEecCCCccEEEEEECCC-CcEEEEECCCcEEEEECCCCcEEEEE-cCCCCceEEEEECCCCC
Confidence 2 2322111100 011122233333445554 34556667789999999988765441 22344678899999998
Q ss_pred CCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC-CeeecCCCCCccCcceecCCCCEE
Q 003886 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFL 386 (789)
Q Consensus 308 ~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~SpDG~~l 386 (789)
. |+..+ .+..|.++|+ .++ ....+..+...+...+|+|||+.|
T Consensus 198 ~----l~sg~---------------~d~~v~~wd~-----------------~~~~~~~~~~~h~~~v~~v~~~p~~~~l 241 (340)
T 1got_B 198 L----FVSGA---------------CDASAKLWDV-----------------REGMCRQTFTGHESDINAICFFPNGNAF 241 (340)
T ss_dssp E----EEEEE---------------TTSCEEEEET-----------------TTCSEEEEECCCSSCEEEEEECTTSSEE
T ss_pred E----EEEEe---------------CCCcEEEEEC-----------------CCCeeEEEEcCCcCCEEEEEEcCCCCEE
Confidence 6 65554 2336888887 333 345666677778899999999998
Q ss_pred EEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCC
Q 003886 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (789)
Q Consensus 387 a~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (789)
+..+.+. .|.+||+.++..... ... ... ...+..+.|+|||+.| +++..++
T Consensus 242 ~s~s~d~-----------~v~iwd~~~~~~~~~----------~~~--~~~-----~~~v~~~~~s~~g~~l-~~g~~d~ 292 (340)
T 1got_B 242 ATGSDDA-----------TCRLFDLRADQELMT----------YSH--DNI-----ICGITSVSFSKSGRLL-LAGYDDF 292 (340)
T ss_dssp EEEETTS-----------CEEEEETTTTEEEEE----------ECC--TTC-----CSCEEEEEECTTSSEE-EEEETTS
T ss_pred EEEcCCC-----------cEEEEECCCCcEEEE----------Ecc--CCc-----ccceEEEEECCCCCEE-EEECCCC
Confidence 8777543 589999876433110 000 000 0123467899999855 5555555
Q ss_pred eEEEEEEECCCCcEEEecCC-CCCceeEEeeecCCEEEEEE
Q 003886 467 SQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 467 ~~~l~~~dl~tg~~~~lt~~-~~~~~~~~~s~dg~~l~~~~ 506 (789)
. |..+|+.+++....... ...+....++++|..|+...
T Consensus 293 ~--i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s 331 (340)
T 1got_B 293 N--CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331 (340)
T ss_dssp E--EEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred e--EEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEc
Confidence 5 44557767765544333 33455567888887665443
|
| >1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A* 2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A 3qmm_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-12 Score=126.06 Aligned_cols=134 Identities=18% Similarity=0.182 Sum_probs=98.9
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCc---EEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY---SLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy---~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (789)
.|+||++||.+.+ ...|......|+++|| .|+++|++| +|.+.. ...+++.+.++.++++ .
T Consensus 3 ~~~vv~~HG~~~~--~~~~~~~~~~l~~~G~~~~~v~~~d~~g---~g~s~~---------~~~~~~~~~~~~~~~~--~ 66 (181)
T 1isp_A 3 HNPVVMVHGIGGA--SFNFAGIKSYLVSQGWSRDKLYAVDFWD---KTGTNY---------NNGPVLSRFVQKVLDE--T 66 (181)
T ss_dssp CCCEEEECCTTCC--GGGGHHHHHHHHHTTCCGGGEEECCCSC---TTCCHH---------HHHHHHHHHHHHHHHH--H
T ss_pred CCeEEEECCcCCC--HhHHHHHHHHHHHcCCCCccEEEEecCC---CCCchh---------hhHHHHHHHHHHHHHH--c
Confidence 5789999997764 5677778889999998 699999998 333221 2356666666666665 3
Q ss_pred CCccEEEEEcCccHHHHHHHHHhC--CCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHH
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRF 746 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~~--p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (789)
+.+++.++|||+||.+++.++.++ |++++++|+.+|....... ..+ +.
T Consensus 67 ~~~~~~lvG~S~Gg~~a~~~~~~~~~~~~v~~~v~~~~~~~~~~~--------------------~~~---~~------- 116 (181)
T 1isp_A 67 GAKKVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTG--------------------KAL---PG------- 116 (181)
T ss_dssp CCSCEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCS--------------------BCC---CC-------
T ss_pred CCCeEEEEEECccHHHHHHHHHhcCCCceEEEEEEEcCccccccc--------------------ccC---CC-------
Confidence 567899999999999999999987 8899999999987542110 000 00
Q ss_pred HhcCccccCCCCCCCEEEEEeCCCCCCChHHH
Q 003886 747 HSKSPISHISKVKTPTIFLLGAQDLRVPVSNG 778 (789)
Q Consensus 747 ~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~ 778 (789)
.....++|+|++||++|..||++.+
T Consensus 117 -------~~~~~~~p~l~i~G~~D~~v~~~~~ 141 (181)
T 1isp_A 117 -------TDPNQKILYTSIYSSADMIVMNYLS 141 (181)
T ss_dssp -------SCTTCCCEEEEEEETTCSSSCHHHH
T ss_pred -------CCCccCCcEEEEecCCCcccccccc
Confidence 0012357999999999999999854
|
| >2cjp_A Epoxide hydrolase; HET: PG4 VPR; 1.95A {Solanum tuberosum} PDB: 3cxu_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-12 Score=138.20 Aligned_cols=120 Identities=21% Similarity=0.307 Sum_probs=84.3
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~ 651 (789)
+|..++....- +.|.||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+..... .......
T Consensus 19 ~g~~l~y~~~G--------~g~~vvllHG~~~~--~~~w~~~~~~L~~~g~~via~Dl~G---~G~S~~~~~-~~~~~~~ 84 (328)
T 2cjp_A 19 NGLNMHLAELG--------EGPTILFIHGFPEL--WYSWRHQMVYLAERGYRAVAPDLRG---YGDTTGAPL-NDPSKFS 84 (328)
T ss_dssp TTEEEEEEEEC--------SSSEEEEECCTTCC--GGGGHHHHHHHHTTTCEEEEECCTT---STTCBCCCT-TCGGGGS
T ss_pred CCcEEEEEEcC--------CCCEEEEECCCCCc--hHHHHHHHHHHHHCCcEEEEECCCC---CCCCCCcCc-CCccccc
Confidence 57666654331 24789999998764 5678778888999999999999998 565542200 1112233
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
++++.+.+..+++.-..+.+++.|+|||+||.+++.+|.++|++++++|+.++.
T Consensus 85 ~~~~a~dl~~~l~~l~~~~~~~~lvGhS~Gg~ia~~~A~~~p~~v~~lvl~~~~ 138 (328)
T 2cjp_A 85 ILHLVGDVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKALVNLSVH 138 (328)
T ss_dssp HHHHHHHHHHHHHHHCTTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEECHHHHHHHHHHHhChhheeEEEEEccC
Confidence 455444444444431112578999999999999999999999999999998753
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.43 E-value=9.3e-12 Score=133.98 Aligned_cols=131 Identities=13% Similarity=0.044 Sum_probs=80.4
Q ss_pred CCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeec-----
Q 003886 293 KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL----- 367 (789)
Q Consensus 293 ~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L----- 367 (789)
.......++|||||+. |+++. .. ...|+++++ .++..+.+
T Consensus 209 ~~~~~~~~~~spdg~~----l~v~~-~~-------------~~~v~v~~~-----------------~~g~~~~~~~~~~ 253 (361)
T 3scy_A 209 PGSGPRHLIFNSDGKF----AYLIN-EI-------------GGTVIAFRY-----------------ADGMLDEIQTVAA 253 (361)
T ss_dssp TTCCEEEEEECTTSSE----EEEEE-TT-------------TCEEEEEEE-----------------ETTEEEEEEEEES
T ss_pred CCCCCeEEEEcCCCCE----EEEEc-CC-------------CCeEEEEEe-----------------cCCceEEeEEEec
Confidence 3445668999999996 65554 21 235777776 33333222
Q ss_pred -CCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecC--CCCCCCcccceeeEEeeeeccCCCCCcccccc
Q 003886 368 -TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS 444 (789)
Q Consensus 368 -t~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~--~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~ 444 (789)
..+......++|||||++|+...... ...|.+|+++ ++....+ ..... . .
T Consensus 254 ~~~~~~~~~~i~~spdg~~l~v~~~~~---------~~~i~v~~~~~~~g~~~~~--------~~~~~---g-------~ 306 (361)
T 3scy_A 254 DTVNAQGSGDIHLSPDGKYLYASNRLK---------ADGVAIFKVDETNGTLTKV--------GYQLT---G-------I 306 (361)
T ss_dssp CSSCCCCEEEEEECTTSSEEEEEECSS---------SCEEEEEEECTTTCCEEEE--------EEEEC---S-------S
T ss_pred CCCCCCCcccEEECCCCCEEEEECCCC---------CCEEEEEEEcCCCCcEEEe--------eEecC---C-------C
Confidence 11122345789999999886554330 2357777764 3332111 11100 0 1
Q ss_pred CCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecC
Q 003886 445 SILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 485 (789)
Q Consensus 445 ~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~ 485 (789)
.+..+.|+|||++|++.....+...+|.+|..+|+++.+..
T Consensus 307 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~ 347 (361)
T 3scy_A 307 HPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKK 347 (361)
T ss_dssp CCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSC
T ss_pred CCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecce
Confidence 23467899999988877666788899999999999887753
|
| >1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI, protein structure initiative, TB structural genomics consortium; 1.50A {Mycobacterium tuberculosis} SCOP: c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.9e-13 Score=139.53 Aligned_cols=202 Identities=13% Similarity=0.062 Sum_probs=118.9
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHH---HHHHHHCCcEEEEEcCCCCCCCCchhhccCC-CCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS---LAFLSSVGYSLLIVNYRGSLGFGEEALQSLP-GKV 647 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~---~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~-~~~ 647 (789)
.+..+..+ .|+.+ .|+||++||.+.......|... .+.+++.||.|+++|.+|+.++......... +..
T Consensus 16 ~~~~~~v~--~~p~~-----~~~v~llHG~~~~~~~~~w~~~~~~~~~l~~~~~~vv~pd~~~~~~~~~~~~~~~~~g~~ 88 (280)
T 1dqz_A 16 MGRDIKVQ--FQGGG-----PHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYTDWYQPSQSNGQN 88 (280)
T ss_dssp TTEEEEEE--EECCS-----SSEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCTTCTTSBCSSSCTTTTCC
T ss_pred cCceeEEE--EcCCC-----CCEEEEECCCCCCCCcccccccCcHHHHHhcCCeEEEEECCCCCccccCCCCCCcccccc
Confidence 34556554 34422 2589999998542233455432 3467788999999998865444321100000 000
Q ss_pred CcccHHHH--HHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcch--hh
Q 003886 648 GSQDVNDV--LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC--YV 723 (789)
Q Consensus 648 ~~~~~~D~--~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~--~~ 723 (789)
....+.+. .+.+.++.++-.++.++++|+||||||++++.++.++|++|+++|+.+|..++.... ...+. +.
T Consensus 89 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~l~G~S~GG~~al~~a~~~p~~~~~~v~~sg~~~~~~~~----~~~~~~~~~ 164 (280)
T 1dqz_A 89 YTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESW----WPTLIGLAM 164 (280)
T ss_dssp SCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTSTT----HHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHcCCCCCceEEEEECHHHHHHHHHHHhCCchheEEEEecCcccccCcc----hhhhHHHHh
Confidence 12233332 234444444323677899999999999999999999999999999999987643210 00000 00
Q ss_pred hhccCccccccCCCCChhhHHHHHhcCccccCCCC---CCCEEEEEeCCCC--------------CCChHHHHHHHHHCC
Q 003886 724 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV---KTPTIFLLGAQDL--------------RVPVSNGLQVIYHIP 786 (789)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i---~~P~Lii~G~~D~--------------~vp~~~~~~l~~~l~ 786 (789)
...+......+.+.+. ...+.+.+|..++.++ .+|++|.||++|. .++..++.+++++|+
T Consensus 165 ~~~~~~~~~~~~g~~~---~~~~~~~~p~~~~~~l~~~~~~~~l~~G~~D~~~~~~~~~~~~~~e~~~~~~~~~~~~~L~ 241 (280)
T 1dqz_A 165 NDSGGYNANSMWGPSS---DPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDLGGDNIPAKFLEGLTLRTNQTFRDTYA 241 (280)
T ss_dssp HHTTSCCHHHHHCSTT---SHHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCcCHHHhcCCCC---chhhhhcCHHHHHHHHHhcCCeEEEEeCCCCcccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 0000000000011111 1345566777655554 5799999999997 578899999999886
Q ss_pred C
Q 003886 787 F 787 (789)
Q Consensus 787 ~ 787 (789)
.
T Consensus 242 ~ 242 (280)
T 1dqz_A 242 A 242 (280)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3ibt_A 1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase; QDO, oxidoreductase; 2.60A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-12 Score=132.95 Aligned_cols=116 Identities=14% Similarity=0.204 Sum_probs=86.1
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~ 651 (789)
+|..++....-+ ...|+||++||.+.+ ...|......|++ +|.|+++|+|| +|.+... .....
T Consensus 7 ~g~~l~~~~~g~------~~~~~vv~lHG~~~~--~~~~~~~~~~L~~-~~~v~~~D~~G---~G~S~~~-----~~~~~ 69 (264)
T 3ibt_A 7 NGTLMTYSESGD------PHAPTLFLLSGWCQD--HRLFKNLAPLLAR-DFHVICPDWRG---HDAKQTD-----SGDFD 69 (264)
T ss_dssp TTEECCEEEESC------SSSCEEEEECCTTCC--GGGGTTHHHHHTT-TSEEEEECCTT---CSTTCCC-----CSCCC
T ss_pred CCeEEEEEEeCC------CCCCeEEEEcCCCCc--HhHHHHHHHHHHh-cCcEEEEcccc---CCCCCCC-----ccccC
Confidence 566666444432 245899999997765 4567777777754 59999999998 5554422 22335
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC-CCceeEEEEeCCcc
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPLC 706 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~-p~~~~a~v~~~pv~ 706 (789)
++++.+.+..+++. ++.+++.|+|||+||.+++.++.++ |++++++|+.+|..
T Consensus 70 ~~~~~~~~~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~~p~~v~~lvl~~~~~ 123 (264)
T 3ibt_A 70 SQTLAQDLLAFIDA--KGIRDFQMVSTSHGCWVNIDVCEQLGAARLPKTIIIDWLL 123 (264)
T ss_dssp HHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHSCTTTSCEEEEESCCS
T ss_pred HHHHHHHHHHHHHh--cCCCceEEEecchhHHHHHHHHHhhChhhhheEEEecCCC
Confidence 66666666666665 4557899999999999999999999 99999999998765
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-11 Score=128.47 Aligned_cols=269 Identities=14% Similarity=0.177 Sum_probs=160.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
..+...+|||||++|+.....+ .+.+|+ +++..+.+.. ..+.| ..+.|+|||+.|+..+.+...
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~---h~~~v------~~~~~~~~~~~l~s~~~d~~i 89 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADK-----LIKIWGAYDGKFEKTISG---HKLGI------SDVAWSSDSNLLVSASDDKTL 89 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEEECC---CSSCE------EEEEECTTSSEEEEEETTSEE
T ss_pred CcEEEEEECCCCCEEEEeeCCC-----eEEEEeCCCcccchhhcc---CCCce------EEEEEcCCCCEEEEECCCCEE
Confidence 3578899999999999876554 456673 4444443321 12222 789999999999988766533
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
. .|+............+........|.++....+++..+..|.+||+.+++..... ......+..+.|+|||+.
T Consensus 90 ~--vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~--- 163 (312)
T 4ery_A 90 K--IWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-PAHSDPVSAVHFNRDGSL--- 163 (312)
T ss_dssp E--EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSE---
T ss_pred E--EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcEEEEEEcCCCCE---
Confidence 2 3333222222222233344445567777655566667789999999988754431 233446788999999997
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecC-CCCCccCcceecCCCCEEEEE
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLT-ESISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt-~~~~~~~~p~~SpDG~~la~~ 389 (789)
|+..+ ....|.++|+ .+++ ...+. .........+|+|||++|+..
T Consensus 164 -l~~~~---------------~d~~i~~wd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 210 (312)
T 4ery_A 164 -IVSSS---------------YDGLCRIWDT-----------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 210 (312)
T ss_dssp -EEEEE---------------TTSCEEEEET-----------------TTCCEEEEECCSSCCCEEEEEECTTSSEEEEE
T ss_pred -EEEEe---------------CCCcEEEEEC-----------------CCCceeeEEeccCCCceEEEEECCCCCEEEEE
Confidence 66555 2236888887 3333 33333 233456778999999998877
Q ss_pred ecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccc-cCCCEEEEEEEeCCeE
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWGSSQ 468 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws-~Dg~~l~~~~~~~~~~ 468 (789)
+.+. .|.+||+.++.......+. .... ......|+ ++++ +++++..++.
T Consensus 211 ~~d~-----------~i~iwd~~~~~~~~~~~~~----------~~~~-------~~~~~~~~~~~~~-~l~sg~~dg~- 260 (312)
T 4ery_A 211 TLDN-----------TLKLWDYSKGKCLKTYTGH----------KNEK-------YCIFANFSVTGGK-WIVSGSEDNL- 260 (312)
T ss_dssp ETTT-----------EEEEEETTTTEEEEEECSS----------CCSS-------SCCCEEEECSSSC-EEEECCTTSC-
T ss_pred cCCC-----------eEEEEECCCCcEEEEEEec----------CCce-------EEEEEEEEeCCCc-EEEEECCCCE-
Confidence 6442 5999998765432110000 0000 01122344 4555 5555555554
Q ss_pred EEEEEECCCCcEEEecCCC-CCceeEEeeecCCEEEEEE
Q 003886 469 VIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 469 ~l~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~ 506 (789)
|..+|+.+++.......+ ..+....++++++.++...
T Consensus 261 -i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 261 -VYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 298 (312)
T ss_dssp -EEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred -EEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEE
Confidence 455578788766554443 3344457788887665544
|
| >3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase fold, carboxylesterase, Ser- hydrolase; 2.00A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.1e-13 Score=144.00 Aligned_cols=105 Identities=15% Similarity=0.234 Sum_probs=79.7
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.|+||++||.+.......|......|+ +||.|+++|+|| +|.+... ......++++.+.+..+++. +..+
T Consensus 41 ~p~vv~lHG~G~~~~~~~~~~~~~~L~-~~~~vi~~D~~G---~G~S~~~----~~~~~~~~~~~~~l~~~l~~--~~~~ 110 (292)
T 3l80_A 41 NPCFVFLSGAGFFSTADNFANIIDKLP-DSIGILTIDAPN---SGYSPVS----NQANVGLRDWVNAILMIFEH--FKFQ 110 (292)
T ss_dssp SSEEEEECCSSSCCHHHHTHHHHTTSC-TTSEEEEECCTT---STTSCCC----CCTTCCHHHHHHHHHHHHHH--SCCS
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHHh-hcCeEEEEcCCC---CCCCCCC----CcccccHHHHHHHHHHHHHH--hCCC
Confidence 389999997434333456666666676 699999999998 5554311 12234577777777777776 3456
Q ss_pred cEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
++.|+|||+||.+++.++.++|++++++|+.+|..
T Consensus 111 ~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 145 (292)
T 3l80_A 111 SYLLCVHSIGGFAALQIMNQSSKACLGFIGLEPTT 145 (292)
T ss_dssp EEEEEEETTHHHHHHHHHHHCSSEEEEEEEESCCC
T ss_pred CeEEEEEchhHHHHHHHHHhCchheeeEEEECCCC
Confidence 99999999999999999999999999999999654
|
| >1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI, protei structure initiative; HET: MSE 3OH; 1.70A {Escherichia coli} SCOP: c.69.1.26 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-12 Score=133.15 Aligned_cols=94 Identities=23% Similarity=0.330 Sum_probs=71.4
Q ss_pred EEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccE
Q 003886 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 673 (789)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv 673 (789)
.||++||.+.+ ...|......|+ .+|.|+++|+|| +|.+... ...+++++. +.+.+. ++ +++
T Consensus 15 ~vvllHG~~~~--~~~w~~~~~~L~-~~~~vi~~Dl~G---~G~S~~~------~~~~~~~~~---~~l~~~--l~-~~~ 76 (258)
T 1m33_A 15 HLVLLHGWGLN--AEVWRCIDEELS-SHFTLHLVDLPG---FGRSRGF------GALSLADMA---EAVLQQ--AP-DKA 76 (258)
T ss_dssp EEEEECCTTCC--GGGGGGTHHHHH-TTSEEEEECCTT---STTCCSC------CCCCHHHHH---HHHHTT--SC-SSE
T ss_pred eEEEECCCCCC--hHHHHHHHHHhh-cCcEEEEeeCCC---CCCCCCC------CCcCHHHHH---HHHHHH--hC-CCe
Confidence 79999997654 556776777776 589999999998 5655422 123454443 444443 45 789
Q ss_pred EEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 674 TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 674 ~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
.|+|||+||.+++.+|.++|++++++|+.++.
T Consensus 77 ~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~~ 108 (258)
T 1m33_A 77 IWLGWSLGGLVASQIALTHPERVRALVTVASS 108 (258)
T ss_dssp EEEEETHHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred EEEEECHHHHHHHHHHHHhhHhhceEEEECCC
Confidence 99999999999999999999999999998764
|
| >2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR family, developmental protei differentiation, neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus musculus} PDB: 2xmq_A 2xmr_A 2xms_A | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-12 Score=133.72 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=83.6
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchh-hHH-----HHHHHHHCCcEEEEEcCCCCCCCCchhhccCC
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YSK-----SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 644 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~-~~~-----~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~ 644 (789)
.+|..++....-+. ....|+||++||.+.+ ... |.. ....|++ +|.|+++|+|| +|.+.... +
T Consensus 18 ~~~~~l~y~~~G~~----~~~~p~vvllHG~~~~--~~~~~~~~~~~~~~~~L~~-~~~vi~~D~~G---~G~s~~~~-~ 86 (286)
T 2qmq_A 18 TPYGSVTFTVYGTP----KPKRPAIFTYHDVGLN--YKSCFQPLFRFGDMQEIIQ-NFVRVHVDAPG---MEEGAPVF-P 86 (286)
T ss_dssp ETTEEEEEEEESCC----CTTCCEEEEECCTTCC--HHHHHHHHHTSHHHHHHHT-TSCEEEEECTT---TSTTCCCC-C
T ss_pred cCCeEEEEEeccCC----CCCCCeEEEeCCCCCC--chhhhhhhhhhchhHHHhc-CCCEEEecCCC---CCCCCCCC-C
Confidence 36777766555332 2256899999997765 222 332 4556655 69999999998 44332111 1
Q ss_pred CCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 645 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
.......++++.+.+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.+|..
T Consensus 87 ~~~~~~~~~~~~~~l~~~l~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 146 (286)
T 2qmq_A 87 LGYQYPSLDQLADMIPCILQY--LNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDP 146 (286)
T ss_dssp TTCCCCCHHHHHHTHHHHHHH--HTCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred CCCCccCHHHHHHHHHHHHHH--hCCCcEEEEEEChHHHHHHHHHHhChhheeeEEEECCCC
Confidence 111112466666666555554 345689999999999999999999999999999999865
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=6.1e-11 Score=127.92 Aligned_cols=268 Identities=12% Similarity=0.080 Sum_probs=135.4
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCE-EEEEeecCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL-IAYVAEEPSPSK 233 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~-la~~~~~~~~~~ 233 (789)
.....+|||||++|+..... .-.+|.+..+++..++..... +|.. ..+.|||||++ ++|++.....
T Consensus 41 ~~~~~a~spdg~~l~~~~~~---~v~~~~~~~~g~~~~~~~~~~--~g~~------~~~~~spdg~~l~~~~~~~~~~-- 107 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK---KWSSFAVKSPTEIVHEASHPI--GGHP------RANDADTNTRAIFLLAAKQPPY-- 107 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT---EEEEEEEEETTEEEEEEEEEC--CSSG------GGGCTTSCCEEEEEEECSSTTC--
T ss_pred CCcEEEECCCCCEEEEEccc---eEEEEEECCCCCEEEeeEeec--CCCC------ccEEECCCCCEEEEEEecCCcc--
Confidence 35678999999988765543 222233322565554433221 1111 56899999997 4555431100
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEcc-CCceEe-ccCC--CCCCccceEEEeeCCCCC
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEVQA-VKGI--PKSLSVGQVVWAPLNEGL 309 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~g~~~~-l~~~--~~~~~~~~~~wSPDg~~~ 309 (789)
..+.. +.+. ....+.+|+++ .|+... +... .....+..++|||||+.
T Consensus 108 -----------------------~~~~~---~~~~--~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~- 158 (365)
T 1jof_A 108 -----------------------AVYAN---PFYK--FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY- 158 (365)
T ss_dssp -----------------------CEEEE---EESS--SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE-
T ss_pred -----------------------eeccc---eeec--CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE-
Confidence 00000 0000 12456777775 355432 2101 12335678999999996
Q ss_pred ccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCC-CCCeeec---C--CCCCccCcceecCCC
Q 003886 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE-DLPVVNL---T--ESISSAFFPRFSPDG 383 (789)
Q Consensus 310 ~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~L---t--~~~~~~~~p~~SpDG 383 (789)
|+ +++.. ...|+++++ + +++.+.+ . .+.......+|||||
T Consensus 159 ---l~-~~~~~-------------~~~v~~~~~-----------------~~~g~~~~~~~~~~~~~g~~p~~~~~spdg 204 (365)
T 1jof_A 159 ---LY-SADLT-------------ANKLWTHRK-----------------LASGEVELVGSVDAPDPGDHPRWVAMHPTG 204 (365)
T ss_dssp ---EE-EEETT-------------TTEEEEEEE-----------------CTTSCEEEEEEEECSSTTCCEEEEEECTTS
T ss_pred ---EE-EEcCC-------------CCEEEEEEE-----------------CCCCCEEEeeeEecCCCCCCCCEeEECCCC
Confidence 64 44322 126888887 3 4444322 1 112345677999999
Q ss_pred CEEEEEecCCCCCCCCccccceeEEeecC--CCCCCCcccceeeEEeeeeccCCCCCcccc-----ccCCCCCc-cccCC
Q 003886 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGLY-----SSSILSNP-WLSDG 455 (789)
Q Consensus 384 ~~la~~s~~~~~~~g~~~~~~~L~~~d~~--~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~-----~~~~~~~~-ws~Dg 455 (789)
++|+...... ..+.+++++ ++..... . ..+... +. .+.|.- ......+. |+|||
T Consensus 205 ~~l~v~~~~~----------~~v~v~~~~~~~g~~~~~---~-~~~~~~--~~--~~~g~~~~~~~~~~~~~i~~~spdG 266 (365)
T 1jof_A 205 NYLYALMEAG----------NRICEYVIDPATHMPVYT---H-HSFPLI--PP--GIPDRDPETGKGLYRADVCALTFSG 266 (365)
T ss_dssp SEEEEEETTT----------TEEEEEEECTTTCCEEEE---E-EEEESS--CT--TCCCBCTTTSSBSEEEEEEEECTTS
T ss_pred CEEEEEECCC----------CeEEEEEEeCCCCcEEEc---c-ceEEcC--CC--CcCCcccccccccccccEEEECCCC
Confidence 9987665432 245555543 3332100 0 001111 00 000000 00123568 99999
Q ss_pred CEEEEEEEeCC-----eEEEEEEECCCCcEEEe---cC-CCCCceeEEeee---cCCEEEEEEeCCCCCCeEEEEee
Q 003886 456 CTMLLSSIWGS-----SQVIISVNVSSGELLRI---TP-AESNFSWSLLTL---DGDNIIAVSSSPVDVPQVKYGYF 520 (789)
Q Consensus 456 ~~l~~~~~~~~-----~~~l~~~dl~tg~~~~l---t~-~~~~~~~~~~s~---dg~~l~~~~ss~~~p~~i~~~~~ 520 (789)
++||++..... ...+|.++. +|+++++ .. .........++| ||++|++...... .+.+++.
T Consensus 267 ~~l~v~~~~~~~~~~~~i~v~~~~~-~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~---~v~v~~~ 339 (365)
T 1jof_A 267 KYMFASSRANKFELQGYIAGFKLRD-CGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEG---WLEIYRW 339 (365)
T ss_dssp SEEEEEEEESSTTSCCEEEEEEECT-TSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSC---EEEEEEE
T ss_pred CEEEEECCCCCCCCCCeEEEEEECC-CCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCC---eEEEEEE
Confidence 98876554443 455665543 6777652 11 122233457899 7888766544322 3555544
|
| >3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein, alpha/beta-hydrolases fold, structur genomics; HET: MSE; 1.66A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-12 Score=125.20 Aligned_cols=136 Identities=13% Similarity=0.140 Sum_probs=98.1
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
+.|.||++||.+.+.. ..|......+...+ +.++++| ++ ..++++..+.+..+++. .+
T Consensus 16 ~~~~vv~~HG~~~~~~-~~~~~~~~~~~~~~---~~v~~~~---~~------------~~~~~~~~~~~~~~~~~--~~- 73 (191)
T 3bdv_A 16 QQLTMVLVPGLRDSDD-EHWQSHWERRFPHW---QRIRQRE---WY------------QADLDRWVLAIRRELSV--CT- 73 (191)
T ss_dssp TTCEEEEECCTTCCCT-TSHHHHHHHHCTTS---EECCCSC---CS------------SCCHHHHHHHHHHHHHT--CS-
T ss_pred CCceEEEECCCCCCch-hhHHHHHHHhcCCe---EEEeccC---CC------------CcCHHHHHHHHHHHHHh--cC-
Confidence 4588999999876531 34444433332333 4556665 21 23466667777666665 34
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcC
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKS 750 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 750 (789)
+++.|+|||+||.+++.++.++|++++++|+.+|....... + +.
T Consensus 74 ~~~~l~G~S~Gg~~a~~~a~~~p~~v~~lvl~~~~~~~~~~--------------~-----------~~----------- 117 (191)
T 3bdv_A 74 QPVILIGHSFGALAACHVVQQGQEGIAGVMLVAPAEPMRFE--------------I-----------DD----------- 117 (191)
T ss_dssp SCEEEEEETHHHHHHHHHHHTTCSSEEEEEEESCCCGGGGT--------------C-----------TT-----------
T ss_pred CCeEEEEEChHHHHHHHHHHhcCCCccEEEEECCCcccccc--------------C-----------cc-----------
Confidence 79999999999999999999999999999999997653210 0 00
Q ss_pred ccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHC
Q 003886 751 PISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHI 785 (789)
Q Consensus 751 p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l 785 (789)
...+.++++|+|+++|++|..+|++.+.++++.+
T Consensus 118 -~~~~~~~~~P~lii~g~~D~~~~~~~~~~~~~~~ 151 (191)
T 3bdv_A 118 -RIQASPLSVPTLTFASHNDPLMSFTRAQYWAQAW 151 (191)
T ss_dssp -TSCSSCCSSCEEEEECSSBTTBCHHHHHHHHHHH
T ss_pred -ccccccCCCCEEEEecCCCCcCCHHHHHHHHHhc
Confidence 0346788999999999999999999999998865
|
| >2psd_A Renilla-luciferin 2-monooxygenase; alpha/beta-hydrolase, luciferase, oxidoreductase; 1.40A {Renilla reniformis} PDB: 2pse_A 2psj_A* 2psh_A 2psf_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=138.29 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=83.5
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~ 651 (789)
+|..++.... ..++.|.||++||.+.+ ...|......|++. |.|+++|+|| +|.+... ..+...
T Consensus 29 ~g~~l~y~~~------G~g~~~~vvllHG~~~~--~~~w~~~~~~L~~~-~~via~Dl~G---hG~S~~~----~~~~~~ 92 (318)
T 2psd_A 29 LDSFINYYDS------EKHAENAVIFLHGNATS--SYLWRHVVPHIEPV-ARCIIPDLIG---MGKSGKS----GNGSYR 92 (318)
T ss_dssp TTEEEEEEEC------CSCTTSEEEEECCTTCC--GGGGTTTGGGTTTT-SEEEEECCTT---STTCCCC----TTSCCS
T ss_pred CCeEEEEEEc------CCCCCCeEEEECCCCCc--HHHHHHHHHHhhhc-CeEEEEeCCC---CCCCCCC----CCCccC
Confidence 5666654332 12234689999997764 45666666667654 7999999998 6655321 112245
Q ss_pred HHHHHHHHHHHHHcCCCCC-ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCC
Q 003886 652 VNDVLTAIDHVIDMGLANP-SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 704 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~-~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~p 704 (789)
++++.+.+..+++. ++. +++.|+||||||.+++.+|.++|++++++|+.++
T Consensus 93 ~~~~a~dl~~ll~~--l~~~~~~~lvGhSmGg~ia~~~A~~~P~~v~~lvl~~~ 144 (318)
T 2psd_A 93 LLDHYKYLTAWFEL--LNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIVHMES 144 (318)
T ss_dssp HHHHHHHHHHHHTT--SCCCSSEEEEEEEHHHHHHHHHHHHCTTSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHh--cCCCCCeEEEEEChhHHHHHHHHHhChHhhheEEEecc
Confidence 77777777777776 445 7899999999999999999999999999999764
|
| >1pja_A Palmitoyl-protein thioesterase 2 precursor; hydrolase, glycoprotein, lysosome; HET: NAG; 2.70A {Homo sapiens} SCOP: c.69.1.13 | Back alignment and structure |
|---|
Probab=99.39 E-value=6.6e-13 Score=139.14 Aligned_cols=104 Identities=16% Similarity=0.192 Sum_probs=81.5
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHHHHHHHHHC--CcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcC
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 666 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~--Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 666 (789)
....|.||++||.+.+ ...|......|+++ ||.|+++|+|| +|.+... ....++++.+.+..+++..
T Consensus 33 ~~~~~~vvllHG~~~~--~~~~~~~~~~L~~~~~g~~vi~~D~~G---~G~s~~~------~~~~~~~~~~~l~~~~~~~ 101 (302)
T 1pja_A 33 RASYKPVIVVHGLFDS--SYSFRHLLEYINETHPGTVVTVLDLFD---GRESLRP------LWEQVQGFREAVVPIMAKA 101 (302)
T ss_dssp --CCCCEEEECCTTCC--GGGGHHHHHHHHHHSTTCCEEECCSSC---SGGGGSC------HHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCeEEEECCCCCC--hhHHHHHHHHHHhcCCCcEEEEeccCC---Cccchhh------HHHHHHHHHHHHHHHhhcC
Confidence 3456789999997664 55788888899988 99999999998 4554321 1234677777777777663
Q ss_pred CCCCccEEEEEcCccHHHHHHHHHhCCC-ceeEEEEeCCcc
Q 003886 667 LANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNPLC 706 (789)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~~~~~p~-~~~a~v~~~pv~ 706 (789)
.+++.|+|||+||.+++.++.++|+ +++++|+.++..
T Consensus 102 ---~~~~~lvGhS~Gg~ia~~~a~~~p~~~v~~lvl~~~~~ 139 (302)
T 1pja_A 102 ---PQGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSSPQ 139 (302)
T ss_dssp ---TTCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESCCT
T ss_pred ---CCcEEEEEECHHHHHHHHHHHhcCccccCEEEEECCCc
Confidence 4789999999999999999999999 799999998754
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.4e-11 Score=128.22 Aligned_cols=245 Identities=13% Similarity=0.152 Sum_probs=150.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
..+...+|||||++|+.....+ .+.+| ..++....+.. ..+.| ..+.|+|||+.|+..+.+
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~---h~~~v------~~~~~~~~~~~l~s~~~d--- 95 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDS-----SASVWYSLNGERLGTLDG---HTGTI------WSIDVDCFTKYCVTGSAD--- 95 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSS-----CEEEEETTTCCEEEEECC---CSSCE------EEEEECTTSSEEEEEETT---
T ss_pred ceEEEEEEcCCCCEEEEEeCCC-----EEEEEeCCCchhhhhhhh---cCCcE------EEEEEcCCCCEEEEEeCC---
Confidence 4588999999999999876543 35566 34444443321 22222 789999999999876432
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
..|.+||+.+++.... ......+..+.|+|||+.
T Consensus 96 -----------------------------------------g~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~--- 129 (369)
T 3zwl_B 96 -----------------------------------------YSIKLWDVSNGQCVAT--WKSPVPVKRVEFSPCGNY--- 129 (369)
T ss_dssp -----------------------------------------TEEEEEETTTCCEEEE--EECSSCEEEEEECTTSSE---
T ss_pred -----------------------------------------CeEEEEECCCCcEEEE--eecCCCeEEEEEccCCCE---
Confidence 5799999998887655 335556789999999997
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCC--ccCcceecCCCCEEEEE
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS--SAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~--~~~~p~~SpDG~~la~~ 389 (789)
|+..+.... .....|+++|+......... ..........+....+ .+...+|+|||+.|+..
T Consensus 130 -l~~~~~~~~----------~~~g~i~~~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (369)
T 3zwl_B 130 -FLAILDNVM----------KNPGSINIYEIERDSATHEL-----TKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG 193 (369)
T ss_dssp -EEEEECCBT----------TBCCEEEEEEEEECTTTCCE-----EEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE
T ss_pred -EEEecCCcc----------CCCCEEEEEEecCCccceee-----cccccceeeeccCCcCccceeEEEEcCCCCEEEEE
Confidence 777653210 01235666666211000000 0001112223333333 67888999999998876
Q ss_pred ecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEE
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (789)
+.+ ..|++||+.++... ...... ....+..+.|+||++.|+. +..++ .
T Consensus 194 ~~d-----------g~i~i~d~~~~~~~---------~~~~~~---------~~~~v~~~~~~~~~~~l~~-~~~d~--~ 241 (369)
T 3zwl_B 194 HKD-----------GKISKYDVSNNYEY---------VDSIDL---------HEKSISDMQFSPDLTYFIT-SSRDT--N 241 (369)
T ss_dssp ETT-----------SEEEEEETTTTTEE---------EEEEEC---------CSSCEEEEEECTTSSEEEE-EETTS--E
T ss_pred cCC-----------CEEEEEECCCCcEe---------EEEEec---------CCCceeEEEECCCCCEEEE-ecCCc--e
Confidence 644 25999998763221 000000 0013446789999996654 44444 4
Q ss_pred EEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCC
Q 003886 470 IISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 470 l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~ 509 (789)
|..+|+.+++...............++++++.+++...+.
T Consensus 242 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 242 SFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp EEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC
T ss_pred EEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCC
Confidence 6667888888776655555556678899999887776544
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.4e-11 Score=128.62 Aligned_cols=291 Identities=9% Similarity=-0.009 Sum_probs=166.7
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCcccee--ecCCcceecccEEEEeCCC---CCeEEEEecCCCC
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQ--WAPFPVEMTGASAVVPSPS---GSKLLVVRNPENE 177 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt--~~~~~~~~~~~~~~~~SPd---G~~la~~~~~~~~ 177 (789)
.++|||..++...+.. +..+.+.++++.+. +...+. ... ..+...+|+|+ |+.|+.....+
T Consensus 25 ~~~p~~~~l~~~~s~~-----~~d~~v~iw~~~~~--~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~l~~~~~dg-- 90 (357)
T 3i2n_A 25 KWVPCSAKFVTMGNFA-----RGTGVIQLYEIQHG--DLKLLREIEKA-----KPIKCGTFGATSLQQRYLATGDFGG-- 90 (357)
T ss_dssp EECTTSSEEEEEEC-------CCCEEEEEEEECSS--SEEEEEEEEES-----SCEEEEECTTCCTTTCCEEEEETTS--
T ss_pred EEcCCCceEEEecCcc-----CCCcEEEEEeCCCC--cccceeeeccc-----CcEEEEEEcCCCCCCceEEEecCCC--
Confidence 4579998776553220 12456777776433 222221 122 45889999999 68888776543
Q ss_pred CCeEEEEec--CCc-eeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCC
Q 003886 178 SPIQFELWS--QSQ-LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK 254 (789)
Q Consensus 178 ~~~~~~i~~--~~~-~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (789)
.+.+|+ .++ ....+.. ..+.|..-.+...++||||++.|+..+.+
T Consensus 91 ---~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~s~~~~~l~~~~~d-------------------------- 138 (357)
T 3i2n_A 91 ---NLHIWNLEAPEMPVYSVKG---HKEIINAIDGIGGLGIGEGAPEIVTGSRD-------------------------- 138 (357)
T ss_dssp ---CEEEECTTSCSSCSEEECC---CSSCEEEEEEESGGGCC-CCCEEEEEETT--------------------------
T ss_pred ---eEEEEeCCCCCccEEEEEe---cccceEEEeeccccccCCCccEEEEEeCC--------------------------
Confidence 355662 333 3333321 11222111111233689999998876443
Q ss_pred CcceeeCCcccccCCccCceEEEEEccCCc--eEeccCCCC--CCccceEE----EeeCCCCCccEEEEEeecCCceeee
Q 003886 255 GQGDWEEDWGETYAGKRQPSLFVININSGE--VQAVKGIPK--SLSVGQVV----WAPLNEGLHQYLVFVGWSSETRKLG 326 (789)
Q Consensus 255 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~--~~~l~~~~~--~~~~~~~~----wSPDg~~~~~~l~f~~~~~~~~~~g 326 (789)
..|.+||+.+++ ...+..... ...+..+. |+||++. |+..+
T Consensus 139 ------------------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----l~~~~--------- 187 (357)
T 3i2n_A 139 ------------------GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERV----VCAGY--------- 187 (357)
T ss_dssp ------------------SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCE----EEEEE---------
T ss_pred ------------------CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCE----EEEEc---------
Confidence 468888888765 333421111 12444555 7899987 66655
Q ss_pred eeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecC---CCCEEEEEecCCCCCCCCcccc
Q 003886 327 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSP---DGKFLVFLSAKSSVDSGAHSAT 403 (789)
Q Consensus 327 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~Sp---DG~~la~~s~~~~~~~g~~~~~ 403 (789)
....|+++|+ .+++......+...+....|+| +|+.|+..+.+.
T Consensus 188 ------~d~~i~i~d~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg---------- 234 (357)
T 3i2n_A 188 ------DNGDIKLFDL-----------------RNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEG---------- 234 (357)
T ss_dssp ------TTSEEEEEET-----------------TTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTT----------
T ss_pred ------cCCeEEEEEC-----------------ccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCC----------
Confidence 2336888998 5555555555666788999999 999988776442
Q ss_pred ceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc----
Q 003886 404 DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE---- 479 (789)
Q Consensus 404 ~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~---- 479 (789)
.|++||+.++....... ...... ....+..+.|+|+++.+++++..++...+|.++.....
T Consensus 235 -~i~i~d~~~~~~~~~~~----~~~~~~----------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 299 (357)
T 3i2n_A 235 -KFHVFDMRTQHPTKGFA----SVSEKA----------HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD 299 (357)
T ss_dssp -EEEEEEEEEEETTTEEE----EEEEEC----------CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC
T ss_pred -eEEEEeCcCCCccccee----eeccCC----------CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc
Confidence 58889987644321100 000000 01134567899999877788888888888877642211
Q ss_pred --------------EEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 480 --------------LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 480 --------------~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
+..+......+....|+++++.++++.+... .+.+.++.
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~---~i~iw~~~ 352 (357)
T 3i2n_A 300 SEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ---TVRVLIVT 352 (357)
T ss_dssp TTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS---EEEEEEEC
T ss_pred CCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC---cEEEEECC
Confidence 2223333334455678888888876665443 35565554
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-11 Score=131.43 Aligned_cols=198 Identities=15% Similarity=0.106 Sum_probs=127.9
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (789)
.||||++++..... ..+.+.++++.+ +.....+. .. +.+...+|||||++|+..++.. +..
T Consensus 141 fSpDg~~la~as~~-------~d~~i~iwd~~~-~~~~~~~~-~~-----~~V~~v~fspdg~~l~s~s~~~-----~~~ 201 (365)
T 4h5i_A 141 ISREGTVAAIASSK-------VPAIMRIIDPSD-LTEKFEIE-TR-----GEVKDLHFSTDGKVVAYITGSS-----LEV 201 (365)
T ss_dssp ECTTSSCEEEEESC-------SSCEEEEEETTT-TEEEEEEE-CS-----SCCCEEEECTTSSEEEEECSSC-----EEE
T ss_pred EcCCCCEEEEEECC-------CCCEEEEeECCC-CcEEEEeC-CC-----CceEEEEEccCCceEEecccee-----EEE
Confidence 47999998765432 345677777632 22122221 22 4588899999999999886543 555
Q ss_pred Ee-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCC
Q 003886 184 LW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEED 262 (789)
Q Consensus 184 i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 262 (789)
+| ..++...... ...... .+..++|||||+.++..+.+..
T Consensus 202 ~~~~~~~~~~~~~-~~~~~~------~v~~v~fspdg~~l~~~s~d~~-------------------------------- 242 (365)
T 4h5i_A 202 ISTVTGSCIARKT-DFDKNW------SLSKINFIADDTVLIAASLKKG-------------------------------- 242 (365)
T ss_dssp EETTTCCEEEEEC-CCCTTE------EEEEEEEEETTEEEEEEEESSS--------------------------------
T ss_pred EEeccCcceeeee-cCCCCC------CEEEEEEcCCCCEEEEEecCCc--------------------------------
Confidence 66 3443322221 112211 2378999999999998776532
Q ss_pred cccccCCccCceEEEEEccCCceEecc--C-CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEE
Q 003886 263 WGETYAGKRQPSLFVININSGEVQAVK--G-IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339 (789)
Q Consensus 263 ~g~~~~~~~~~~l~v~d~~~g~~~~l~--~-~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~ 339 (789)
....++.|++..+....+. . ......+..++|||||+. |+..+. +..|.+
T Consensus 243 --------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~----lasgs~---------------D~~V~i 295 (365)
T 4h5i_A 243 --------KGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGEL----AVLASN---------------DNSIAL 295 (365)
T ss_dssp --------CCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCE----EEEEET---------------TSCEEE
T ss_pred --------ceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCc----eEEEcC---------------CCEEEE
Confidence 2245777887766543210 0 122335778999999997 776662 336888
Q ss_pred EecccccchhhhhhhhcCCCCCCCe-ee-cCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 340 VRVSLYKSEASELELKESSSEDLPV-VN-LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~~-~~-Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
+|+ .+++. .. +..+...+...+|||||++||..+.+. .|.+||++.+
T Consensus 296 wd~-----------------~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~-----------tvrvw~ip~~ 344 (365)
T 4h5i_A 296 VKL-----------------KDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAAN-----------TIHIIKLPLN 344 (365)
T ss_dssp EET-----------------TTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTS-----------EEEEEECCTT
T ss_pred EEC-----------------CCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCC-----------eEEEEEcCCC
Confidence 898 55543 34 456778899999999999999888664 5889998754
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-11 Score=133.57 Aligned_cols=264 Identities=16% Similarity=0.096 Sum_probs=149.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCcc-c--------cccCCCcccceeecCCCCEE
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVH-G--------SVYADGWFEGISWNSDETLI 222 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~-g--------~v~~d~~~~~~~wSpDg~~l 222 (789)
..+...+|||||++||...+. ...+| .+++....+....... . ..-.+..+..+.|||||+.|
T Consensus 65 ~~V~~v~fspdg~~la~g~~~------~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 65 SVVCCVKFSNDGEYLATGCNK------TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp SCCCEEEECTTSSEEEEECBS------CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CEEEEEEECCCCCEEEEEcCC------cEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 347789999999999986532 13445 3444333332110000 0 00001124689999999999
Q ss_pred EEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEE
Q 003886 223 AYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVW 302 (789)
Q Consensus 223 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~w 302 (789)
|..+.+.... .|+....+.......+...+....|.++....+++..+..|.+||+.+++.... ......+..++|
T Consensus 139 ~s~~~d~~i~--iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~--~~~~~~v~~~~~ 214 (393)
T 1erj_A 139 ATGAEDRLIR--IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT--LSIEDGVTTVAV 214 (393)
T ss_dssp EEEETTSCEE--EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEE
T ss_pred EEEcCCCeEE--EEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEE--EEcCCCcEEEEE
Confidence 9887765432 344322222222333444455667888866666777788999999999876544 233445778899
Q ss_pred ee-CCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeec-------CCCCCc
Q 003886 303 AP-LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNL-------TESISS 373 (789)
Q Consensus 303 SP-Dg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~L-------t~~~~~ 373 (789)
+| ||+. |+..+. +..|.++|+ .++. ...+ ..+...
T Consensus 215 ~~~~~~~----l~~~s~---------------d~~v~iwd~-----------------~~~~~~~~~~~~~~~~~~h~~~ 258 (393)
T 1erj_A 215 SPGDGKY----IAAGSL---------------DRAVRVWDS-----------------ETGFLVERLDSENESGTGHKDS 258 (393)
T ss_dssp CSTTCCE----EEEEET---------------TSCEEEEET-----------------TTCCEEEEEC------CCCSSC
T ss_pred ECCCCCE----EEEEcC---------------CCcEEEEEC-----------------CCCcEEEeecccccCCCCCCCC
Confidence 99 7776 665542 235777787 3333 2233 344556
Q ss_pred cCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccc--ee-eEEeeeeccCCCCCccccccCCCCCc
Q 003886 374 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK--IV-DVIPVVQCAEGDCFPGLYSSSILSNP 450 (789)
Q Consensus 374 ~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~--~~-~v~~~~~~~~~~~f~g~~~~~~~~~~ 450 (789)
+...+|+|||+.|+..+.+. .|.+||+.+......... .. ....+. | ....+..+.
T Consensus 259 v~~v~~~~~g~~l~s~s~d~-----------~v~~wd~~~~~~~~~~~~~~~~~~~~~~~---------~-h~~~v~~~~ 317 (393)
T 1erj_A 259 VYSVVFTRDGQSVVSGSLDR-----------SVKLWNLQNANNKSDSKTPNSGTCEVTYI---------G-HKDFVLSVA 317 (393)
T ss_dssp EEEEEECTTSSEEEEEETTS-----------EEEEEEC---------------CEEEEEE---------C-CSSCEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCC-----------EEEEEECCCCCCcccccCCCCCcceEEEe---------c-ccCcEEEEE
Confidence 78899999999988766443 588999876433211000 00 000000 0 011234678
Q ss_pred cccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC
Q 003886 451 WLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE 487 (789)
Q Consensus 451 ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~ 487 (789)
|+++++.| +++..++. +..+|+.+++.......+
T Consensus 318 ~~~~~~~l-~sgs~D~~--v~iwd~~~~~~~~~l~~h 351 (393)
T 1erj_A 318 TTQNDEYI-LSGSKDRG--VLFWDKKSGNPLLMLQGH 351 (393)
T ss_dssp ECGGGCEE-EEEETTSE--EEEEETTTCCEEEEEECC
T ss_pred ECCCCCEE-EEEeCCCe--EEEEECCCCeEEEEECCC
Confidence 99999865 45555554 555688888766544433
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-10 Score=123.86 Aligned_cols=275 Identities=11% Similarity=0.090 Sum_probs=164.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
+.+...+|||||++|+..+..+ ...+|+ .++....+.. .... ...++|+|||+.||..+.+...
T Consensus 67 ~~V~~~~~sp~~~~l~s~s~D~-----~v~iWd~~~~~~~~~~~~---h~~~------v~~~~~s~~g~~las~~~d~~v 132 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSASQDG-----RLIVWNALTSQKTHAIKL---HCPW------VMECAFAPNGQSVACGGLDSAC 132 (380)
T ss_dssp SCEEEEEECTTSSCEEEEETTS-----EEEEEETTTTEEEEEEEC---CCTT------CCCCEECTTSSEEEECCSSSCC
T ss_pred cEEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCccceEEec---CCCC------EEEEEECCCCCEEEEeeCCCcE
Confidence 4588999999999999877654 577884 3433333322 1112 2789999999999988766543
Q ss_pred CCCCccCCCC-------CCCCCCcCCCCCCCcceeeCCccc-ccCCccCceEEEEEccCCceEeccCC----CCCCccce
Q 003886 232 SKPTFSLGST-------KGGSSDKDCNSWKGQGDWEEDWGE-TYAGKRQPSLFVININSGEVQAVKGI----PKSLSVGQ 299 (789)
Q Consensus 232 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~d~g~-~~~~~~~~~l~v~d~~~g~~~~l~~~----~~~~~~~~ 299 (789)
. .|+.... ........+........|.++.+. .+++..+..|.+||+.+++.....+. .....+..
T Consensus 133 ~--iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 210 (380)
T 3iz6_a 133 S--IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210 (380)
T ss_dssp E--EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEE
T ss_pred E--EEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEE
Confidence 3 2322111 111223344445555566665433 45566778999999999876544211 11234667
Q ss_pred EEEee-CCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcce
Q 003886 300 VVWAP-LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPR 378 (789)
Q Consensus 300 ~~wSP-Dg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~ 378 (789)
+.|+| +++. |+..+ .+..|.++|+.. .......+..+.+.+...+
T Consensus 211 ~~~~~~~~~~----l~sgs---------------~D~~v~~wd~~~---------------~~~~~~~~~~h~~~v~~v~ 256 (380)
T 3iz6_a 211 LSINSLNANM----FISGS---------------CDTTVRLWDLRI---------------TSRAVRTYHGHEGDINSVK 256 (380)
T ss_dssp EEECSSSCCE----EEEEE---------------TTSCEEEEETTT---------------TCCCCEEECCCSSCCCEEE
T ss_pred EEeecCCCCE----EEEEE---------------CCCeEEEEECCC---------------CCcceEEECCcCCCeEEEE
Confidence 88877 6654 44443 233677888721 2234556777778899999
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEE
Q 003886 379 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 458 (789)
Q Consensus 379 ~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l 458 (789)
|+|||+.|+..+.+. .|.+||+.++......... ....+... ..+..+.|+|+|+.|
T Consensus 257 ~~p~~~~l~s~s~D~-----------~i~lwd~~~~~~~~~~~~~-------~~~~~~~~-----~~v~~~~~s~~g~~l 313 (380)
T 3iz6_a 257 FFPDGQRFGTGSDDG-----------TCRLFDMRTGHQLQVYNRE-------PDRNDNEL-----PIVTSVAFSISGRLL 313 (380)
T ss_dssp ECTTSSEEEEECSSS-----------CEEEEETTTTEEEEEECCC-------CSSSCCSS-----CSCSEEEECSSSSEE
T ss_pred EecCCCeEEEEcCCC-----------eEEEEECCCCcEEEEeccc-------cccccccc-----CceEEEEECCCCCEE
Confidence 999999988777553 5899998875432111000 00000001 124567899999965
Q ss_pred EEEEEeCCeEEEEEEECCCCcEEEec----C-CCCCceeEEeeecCCEEEE
Q 003886 459 LLSSIWGSSQVIISVNVSSGELLRIT----P-AESNFSWSLLTLDGDNIIA 504 (789)
Q Consensus 459 ~~~~~~~~~~~l~~~dl~tg~~~~lt----~-~~~~~~~~~~s~dg~~l~~ 504 (789)
+++..++. |+.+|+.+++...-. . ....+....|+++|+.|+.
T Consensus 314 -~~g~~dg~--i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 361 (380)
T 3iz6_a 314 -FAGYSNGD--CYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCT 361 (380)
T ss_dssp -EEECTTSC--EEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEE
T ss_pred -EEEECCCC--EEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEE
Confidence 45544554 555677777654322 2 2224455688999886543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.5e-11 Score=129.28 Aligned_cols=269 Identities=13% Similarity=0.086 Sum_probs=163.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
..+...+|||||++|+..+.++ ...+|+ .++....+.... . +...+.|||||+.|+....+...
T Consensus 65 ~~V~~~~~s~d~~~l~s~s~Dg-----~v~vWd~~~~~~~~~~~~~~---~------~v~~~~~sp~g~~lasg~~d~~i 130 (354)
T 2pbi_B 65 NKVLCMDWCKDKRRIVSSSQDG-----KVIVWDSFTTNKEHAVTMPC---T------WVMACAYAPSGCAIACGGLDNKC 130 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----EEEEEETTTCCEEEEEECSS---S------CCCEEEECTTSSEEEEESTTSEE
T ss_pred CeEEEEEECCCCCEEEEEeCCC-----eEEEEECCCCCcceEEecCC---C------CEEEEEECCCCCEEEEeeCCCCE
Confidence 4588999999999999877654 577784 333333333221 1 23789999999999987665432
Q ss_pred CCCCccCCCCCC------CCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeC
Q 003886 232 SKPTFSLGSTKG------GSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 305 (789)
Q Consensus 232 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPD 305 (789)
. .|....... ......+........|.++....+++..+..|.+||+++++..... ......+..+.|+|+
T Consensus 131 ~--v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~ 207 (354)
T 2pbi_B 131 S--VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSF-HGHGADVLCLDLAPS 207 (354)
T ss_dssp E--EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECCC
T ss_pred E--EEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEE-cCCCCCeEEEEEEeC
Confidence 2 222111100 0111123334445567777656667777889999999998765431 122334567788774
Q ss_pred --CCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCccCcceecCC
Q 003886 306 --NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPD 382 (789)
Q Consensus 306 --g~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpD 382 (789)
|+. |+..+ .+..|.++|+ .+++ ...+..+...+...+|+||
T Consensus 208 ~~g~~----l~sgs---------------~Dg~v~~wd~-----------------~~~~~~~~~~~h~~~v~~v~~~p~ 251 (354)
T 2pbi_B 208 ETGNT----FVSGG---------------CDKKAMVWDM-----------------RSGQCVQAFETHESDVNSVRYYPS 251 (354)
T ss_dssp SSCCE----EEEEE---------------TTSCEEEEET-----------------TTCCEEEEECCCSSCEEEEEECTT
T ss_pred CCCCE----EEEEe---------------CCCeEEEEEC-----------------CCCcEEEEecCCCCCeEEEEEeCC
Confidence 554 55444 2336888898 4444 4556666777889999999
Q ss_pred CCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEE
Q 003886 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 462 (789)
Q Consensus 383 G~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~ 462 (789)
|+.|+..+.+. .+.+||+.++..... .... ... ..+..+.|+|||+.| +++
T Consensus 252 ~~~l~s~s~D~-----------~v~lwd~~~~~~~~~----------~~~~-~~~------~~~~~~~~s~~g~~l-~~g 302 (354)
T 2pbi_B 252 GDAFASGSDDA-----------TCRLYDLRADREVAI----------YSKE-SII------FGASSVDFSLSGRLL-FAG 302 (354)
T ss_dssp SSEEEEEETTS-----------CEEEEETTTTEEEEE----------ECCT-TCC------SCEEEEEECTTSSEE-EEE
T ss_pred CCEEEEEeCCC-----------eEEEEECCCCcEEEE----------EcCC-Ccc------cceeEEEEeCCCCEE-EEE
Confidence 99988777543 488999876432110 0000 000 123356799999855 555
Q ss_pred EeCCeEEEEEEECCCCcEEEec-CCCCCceeEEeeecCCEEEEEE
Q 003886 463 IWGSSQVIISVNVSSGELLRIT-PAESNFSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 463 ~~~~~~~l~~~dl~tg~~~~lt-~~~~~~~~~~~s~dg~~l~~~~ 506 (789)
..++...+| |+.+++..... .....+....|+++|+.|+...
T Consensus 303 ~~d~~i~vw--d~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs 345 (354)
T 2pbi_B 303 YNDYTINVW--DVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGS 345 (354)
T ss_dssp ETTSCEEEE--ETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred ECCCcEEEE--ECCCCceEEEEECCCCcEEEEEECCCCCEEEEEc
Confidence 555555554 77677654443 3334555668899988766544
|
| >1ycd_A Hypothetical 27.3 kDa protein in AAP1-SMF2 intergenic region; esterase, lipase, serine hydrolase, structural genomics; HET: LI5; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-12 Score=133.13 Aligned_cols=166 Identities=19% Similarity=0.180 Sum_probs=103.1
Q ss_pred CCcEEEEEcCCCCCCCchhhH----HHHHHHHHCCcEEEEEcCCCCC------------------CCCch--hhccCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYS----KSLAFLSSVGYSLLIVNYRGSL------------------GFGEE--ALQSLPGK 646 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~----~~~~~la~~Gy~V~~~d~rGs~------------------G~G~~--~~~~~~~~ 646 (789)
+.|.||++||.+.+ ...|. .....|.++||.|+.+|+++.. |+|.. +.. .
T Consensus 4 ~~~~vl~lHG~g~~--~~~~~~~~~~l~~~l~~~g~~v~~~d~p~~~~~~~~~~~~~~~~~~~~~g~g~~~~w~~----~ 77 (243)
T 1ycd_A 4 QIPKLLFLHGFLQN--GKVFSEKSSGIRKLLKKANVQCDYIDAPVLLEKKDLPFEMDDEKWQATLDADVNRAWFY----H 77 (243)
T ss_dssp CCCEEEEECCTTCC--HHHHHHHTHHHHHHHHHTTCEEEEECCSEECCGGGCSSCCCHHHHHHHHHTTCCEESSC----C
T ss_pred cCceEEEeCCCCcc--HHHHHHHHHHHHHHHhhcceEEEEcCCCeeCCCcCcccccccccccccCCCCCCccccc----C
Confidence 56899999996664 44443 3455677789999999998321 11211 110 0
Q ss_pred CCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCC------CceeEEEEeCCccchhhhhcCCCCCcc
Q 003886 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP------DKFVAAAARNPLCNLALMVGTTDIPDW 720 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p------~~~~a~v~~~pv~~~~~~~~~~~~~~~ 720 (789)
....+..|+.++++++.+....+..+++|+|||+||.+++.++.+++ ..++++++.++........ ...
T Consensus 78 ~~~~~~~d~~~~~~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a~~~~~~~~~~~~~~~~v~~~g~~~~~~~~---~~~-- 152 (243)
T 1ycd_A 78 SEISHELDISEGLKSVVDHIKANGPYDGIVGLSQGAALSSIITNKISELVPDHPQFKVSVVISGYSFTEPDP---EHP-- 152 (243)
T ss_dssp CSSGGGCCCHHHHHHHHHHHHHHCCCSEEEEETHHHHHHHHHHHHHHHHSTTCCCCSEEEEESCCCCEEECT---TST--
T ss_pred CCCcchhhHHHHHHHHHHHHHhcCCeeEEEEeChHHHHHHHHHHHHhhcccCCCCceEEEEecCCCCCCccc---ccc--
Confidence 11112345666666665542234568999999999999999988642 2577888877764321110 000
Q ss_pred hhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 721 CYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
+. . .+. .. + ......+.++++|+|++||++|.+||++++.++++.++
T Consensus 153 ------~~--~-~~~-----~~---~--~~~~~~~~~~~~P~l~i~G~~D~~vp~~~~~~~~~~~~ 199 (243)
T 1ycd_A 153 ------GE--L-RIT-----EK---F--RDSFAVKPDMKTKMIFIYGASDQAVPSVRSKYLYDIYL 199 (243)
T ss_dssp ------TC--E-EEC-----GG---G--TTTTCCCTTCCCEEEEEEETTCSSSCHHHHHHHHHHHH
T ss_pred ------cc--c-ccc-----hh---H--HHhccCcccCCCCEEEEEeCCCCccCHHHHHHHHHHhh
Confidence 00 0 000 00 0 01122456789999999999999999999999988764
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.2e-11 Score=129.06 Aligned_cols=304 Identities=11% Similarity=0.030 Sum_probs=163.4
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 180 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (789)
.-.++|||+.++... ..+.+.++++.+............. ...+...+|||||++||..+...
T Consensus 21 ~l~~sp~g~~las~~---------~D~~i~iw~~~~~~~~~~~~~~~~h---~~~v~~~~~sp~g~~l~s~s~D~----- 83 (345)
T 3fm0_A 21 FLAWNPAGTLLASCG---------GDRRIRIWGTEGDSWICKSVLSEGH---QRTVRKVAWSPCGNYLASASFDA----- 83 (345)
T ss_dssp EEEECTTSSCEEEEE---------TTSCEEEEEEETTEEEEEEEECSSC---SSCEEEEEECTTSSEEEEEETTS-----
T ss_pred EEEECCCCCEEEEEc---------CCCeEEEEEcCCCcceeeeeecccc---CCcEEEEEECCCCCEEEEEECCC-----
Confidence 335679999887542 2334555555332110011110110 14588899999999999877653
Q ss_pred EEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCC---CCCCcCCCCCCC
Q 003886 181 QFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKG---GSSDKDCNSWKG 255 (789)
Q Consensus 181 ~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 255 (789)
...+|+ .+....+..+. +..+.| ..++|+|||+.|+..+.+.... .|+...... ......+.....
T Consensus 84 ~v~iw~~~~~~~~~~~~~~-~h~~~v------~~v~~sp~~~~l~s~s~D~~v~--iwd~~~~~~~~~~~~~~~h~~~v~ 154 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLE-GHENEV------KSVAWAPSGNLLATCSRDKSVW--VWEVDEEDEYECVSVLNSHTQDVK 154 (345)
T ss_dssp CEEEEEECCC-EEEEEEEC-CCSSCE------EEEEECTTSSEEEEEETTSCEE--EEEECTTSCEEEEEEECCCCSCEE
T ss_pred cEEEEEccCCCeEEEEEcc-CCCCCc------eEEEEeCCCCEEEEEECCCeEE--EEECCCCCCeEEEEEecCcCCCeE
Confidence 345562 23222222222 222333 7899999999999888766432 333221111 011122333344
Q ss_pred cceeeCCcccccCCccCceEEEEEccCCceE---eccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeecc
Q 003886 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQ---AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYN 332 (789)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~---~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~ 332 (789)
...|.++.....++..+..|.+||..+++.. .+ ......+..++|+|||+. |+..+.+
T Consensus 155 ~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~--~~h~~~v~~l~~sp~g~~----l~s~s~D------------- 215 (345)
T 3fm0_A 155 HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATL--EGHESTVWSLAFDPSGQR----LASCSDD------------- 215 (345)
T ss_dssp EEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEE--CCCSSCEEEEEECTTSSE----EEEEETT-------------
T ss_pred EEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEe--cCCCCceEEEEECCCCCE----EEEEeCC-------------
Confidence 5668888655556666788999999887643 33 223446789999999997 7766632
Q ss_pred CCcceEEEecccccchhhhhhhhcCCCCC-CCeeecCC-CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEee
Q 003886 333 RPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRID 410 (789)
Q Consensus 333 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~Lt~-~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d 410 (789)
..|.+++............ ...... .....+.. +...+...+|+|+|..|+..+.+. .+.+|+
T Consensus 216 --~~v~iW~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-----------~i~vw~ 280 (345)
T 3fm0_A 216 --RTVRIWRQYLPGNEQGVAC--SGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDD-----------AIRVFQ 280 (345)
T ss_dssp --SCEEEEEEECTTCTTCCCC--C---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTS-----------CEEEEE
T ss_pred --CeEEEeccccCCCCcccee--eccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCC-----------eEEEEE
Confidence 2344444310000000000 000000 00112222 345577899999999998877553 477777
Q ss_pred cCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003886 411 WPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (789)
Q Consensus 411 ~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~d 474 (789)
..++....... ........ .. +...+..+.|+|++..+++++..++...||.+.
T Consensus 281 ~~~~~~~~~~~-~~~~~~~~-~~--------h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~ 334 (345)
T 3fm0_A 281 EDPNSDPQQPT-FSLTAHLH-QA--------HSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334 (345)
T ss_dssp ECTTSCTTSCC-EEEEEEET-TS--------SSSCEEEEEECSSSTTEEEEEETTSCEEEEEEC
T ss_pred eCCCCCcceee-EEEEeeec-cc--------ccCcEeEeEEeCCCceEEEEcCCCCcEEEEEec
Confidence 76543211100 00000000 00 112355778999987677888888888888764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-10 Score=123.02 Aligned_cols=290 Identities=9% Similarity=0.001 Sum_probs=163.9
Q ss_pred EecCCCCC-ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCC-CCCeEEEEecCCCCC
Q 003886 101 FNSGNGNG-TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP-SGSKLLVVRNPENES 178 (789)
Q Consensus 101 ~~~~spdg-~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SP-dG~~la~~~~~~~~~ 178 (789)
.-.++||| +.++... ..+.+.++++... .....+..... ...+...+||| +++.|+.....+
T Consensus 78 ~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~-~~~~~~~~~~h---~~~v~~~~~~~~~~~~l~s~~~d~--- 141 (383)
T 3ei3_B 78 SLEWHPTHPTTVAVGS---------KGGDIILWDYDVQ-NKTSFIQGMGP---GDAITGMKFNQFNTNQLFVSSIRG--- 141 (383)
T ss_dssp EEEECSSCTTEEEEEE---------BTSCEEEEETTST-TCEEEECCCST---TCBEEEEEEETTEEEEEEEEETTT---
T ss_pred EEEECCCCCCEEEEEc---------CCCeEEEEeCCCc-ccceeeecCCc---CCceeEEEeCCCCCCEEEEEeCCC---
Confidence 33457888 5554432 2345666666322 11122221111 14588999999 677777765543
Q ss_pred CeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcc
Q 003886 179 PIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 257 (789)
Q Consensus 179 ~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (789)
.+.+| ..+...+.+.......+. +..+.|+||++.|+..+.
T Consensus 142 --~i~iwd~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~~l~~~~~------------------------------ 183 (383)
T 3ei3_B 142 --ATTLRDFSGSVIQVFAKTDSWDYW------YCCVDVSVSRQMLATGDS------------------------------ 183 (383)
T ss_dssp --EEEEEETTSCEEEEEECCCCSSCC------EEEEEEETTTTEEEEEET------------------------------
T ss_pred --EEEEEECCCCceEEEeccCCCCCC------eEEEEECCCCCEEEEECC------------------------------
Confidence 45667 334333333322222122 378999999998887543
Q ss_pred eeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcce
Q 003886 258 DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 337 (789)
Q Consensus 258 ~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l 337 (789)
+..|.+||+.+.....+ ......+..++|+|+++. +++++. .+..|
T Consensus 184 --------------d~~i~i~d~~~~~~~~~--~~h~~~v~~~~~~~~~~~----~l~s~~--------------~d~~i 229 (383)
T 3ei3_B 184 --------------TGRLLLLGLDGHEIFKE--KLHKAKVTHAEFNPRCDW----LMATSS--------------VDATV 229 (383)
T ss_dssp --------------TSEEEEEETTSCEEEEE--ECSSSCEEEEEECSSCTT----EEEEEE--------------TTSEE
T ss_pred --------------CCCEEEEECCCCEEEEe--ccCCCcEEEEEECCCCCC----EEEEEe--------------CCCEE
Confidence 25799999966556666 233456789999999996 666552 23368
Q ss_pred EEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecC-CCCEEEEEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 338 YAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSP-DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 338 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~Sp-DG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
.++|+.... ..+.......+...+...+|+| ||+.|+..+.+. .|.+||+.++..
T Consensus 230 ~iwd~~~~~-------------~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~-----------~i~iwd~~~~~~ 285 (383)
T 3ei3_B 230 KLWDLRNIK-------------DKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRN-----------EIRVYSSYDWSK 285 (383)
T ss_dssp EEEEGGGCC-------------STTCEEEEEECSSCEEEEEECTTTSCEEEEEESSS-----------EEEEEETTBTTS
T ss_pred EEEeCCCCC-------------cccceEEEecCCCceEEEEEcCCCCCEEEEEcCCC-----------cEEEEECCCCcc
Confidence 888873100 1133333335667788999999 999998777543 699999987654
Q ss_pred CCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEE------eCCeEEEEEEECCCCcEEEecCC---C
Q 003886 417 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI------WGSSQVIISVNVSSGELLRITPA---E 487 (789)
Q Consensus 417 ~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~------~~~~~~l~~~dl~tg~~~~lt~~---~ 487 (789)
......... . .+. +. ......|+|++..+.+... ......|..+|+.+++....... .
T Consensus 286 ~~~~~~~~~--~--------~~~--~~-~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~ 352 (383)
T 3ei3_B 286 PDQIIIHPH--R--------QFQ--HL-TPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAA 352 (383)
T ss_dssp CSEEEECCB--C--------CCT--TS-CCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBC
T ss_pred ccccccccc--c--------ccc--cc-cceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCC
Confidence 321111000 0 000 00 1112356666654433221 11234566778888876544332 2
Q ss_pred CCceeEEeeecCCEEEEEEeCCCCCCeEEEEee
Q 003886 488 SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (789)
Q Consensus 488 ~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~ 520 (789)
.......|+++++.|+.. ++ ..|.+.++
T Consensus 353 ~~~~~~~~s~~g~~l~s~-sd----~~i~iw~~ 380 (383)
T 3ei3_B 353 GIISLNKFSPTGDVLASG-MG----FNILIWNR 380 (383)
T ss_dssp SCCCEEEECTTSSEEEEE-ET----TEEEEEEC
T ss_pred ceEEEEEEecCccEEEEe-cC----CcEEEEec
Confidence 233444789999877555 32 34666554
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.2e-12 Score=134.84 Aligned_cols=295 Identities=12% Similarity=0.031 Sum_probs=159.9
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
..||||++++-..... .......+++++....... ..+..... ....++...+|||||+.|+ .+.. + .+
T Consensus 49 ~fSpDG~~las~s~d~---~~~wd~~v~~~~~~~~~~~-~~~~~~~~-~~~~~V~~~~~s~d~~~l~-~s~d--g---~v 117 (357)
T 4g56_B 49 RYRRDGALLLAASSLS---SRTWGGSIWVFKDPEGAPN-ESLCTAGV-QTEAGVTDVAWVSEKGILV-ASDS--G---AV 117 (357)
T ss_dssp EECSSSCEEEEEECSS---SSSCCEEEEEESSCC---C-GGGCSEEE-ECSSCEEEEEEETTTEEEE-EETT--S---CE
T ss_pred EECCCCCEEEEEcCCC---CccccCeEEEEECCCCCcc-eeEecccC-CCCCCEEEEEEcCCCCEEE-EECC--C---EE
Confidence 3479999886543211 1112456777765322111 11110000 0014588999999997664 3332 2 25
Q ss_pred EEec--CCceeEEEecC-CCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCccee
Q 003886 183 ELWS--QSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (789)
Q Consensus 183 ~i~~--~~~~~~~~~~~-~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (789)
.+|+ .++........ .+..+.| ..++|||||+.|+..+.+.... .|+............+...+....|
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V------~~v~~spdg~~l~sgs~dg~v~--iwd~~~~~~~~~~~~h~~~v~~v~~ 189 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIV------KTLSVFSDGTQAVSGGKDFSVK--VWDLSQKAVLKSYNAHSSEVNCVAA 189 (357)
T ss_dssp EEC--------CCCCEEECCCSSCE------EEEEECSSSSEEEEEETTSCEE--EEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEeeccccceeEEEeeccCCCCCCE------EEEEECCCCCEEEEEeCCCeEE--EEECCCCcEEEEEcCCCCCEEEEEE
Confidence 5662 22221111111 1122233 7899999999999887765432 3433222222222333344444567
Q ss_pred eCCcccc-cCCccCceEEEEEccCCceEecc-CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcce
Q 003886 260 EEDWGET-YAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 337 (789)
Q Consensus 260 ~~d~g~~-~~~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l 337 (789)
.++.... .+...+..|.+||+.+++..... .......+..++|+||+.. ++.++. ....|
T Consensus 190 s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~----~la~g~--------------~d~~i 251 (357)
T 4g56_B 190 CPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDD----TFACGD--------------ETGNV 251 (357)
T ss_dssp CTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTT----EEEEEE--------------SSSCE
T ss_pred ccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccc----eEEEee--------------cccce
Confidence 6664333 34555678999999888754431 1223345678999999887 666653 22368
Q ss_pred EEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCE-EEEEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 338 YAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF-LVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 338 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~-la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
+++|+. .......+..+...+...+|||||+. |+..+.+ ..|++||+.+++.
T Consensus 252 ~~wd~~----------------~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D-----------~~i~iwd~~~~~~ 304 (357)
T 4g56_B 252 SLVNIK----------------NPDSAQTSAVHSQNITGLAYSYHSSPFLASISED-----------CTVAVLDADFSEV 304 (357)
T ss_dssp EEEESS----------------CGGGCEEECCCSSCEEEEEECSSSSCCEEEEETT-----------SCEEEECTTSCEE
T ss_pred eEEECC----------------CCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCC-----------CEEEEEECCCCcE
Confidence 888872 23345566666777889999999865 5555533 2589999877543
Q ss_pred CCcccceeeEEeeeeccCCCCCccccccCCCCCcccc-CCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003886 417 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS-DGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (789)
Q Consensus 417 ~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~-Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~l 483 (789)
.... +. ...+..++|+| |++ +++++..++...+|.++. .++...+
T Consensus 305 ~~~~-~H-------------------~~~V~~vafsP~d~~-~l~s~s~Dg~v~iW~~~~-~~~~~~~ 350 (357)
T 4g56_B 305 FRDL-SH-------------------RDFVTGVAWSPLDHS-KFTTVGWDHKVLHHHLPS-EGRTENL 350 (357)
T ss_dssp EEEC-CC-------------------SSCEEEEEECSSSTT-EEEEEETTSCEEEEECC---------
T ss_pred eEEC-CC-------------------CCCEEEEEEeCCCCC-EEEEEcCCCeEEEEECCC-CCccccc
Confidence 2111 10 11244678998 777 456777777777776543 3444333
|
| >3b12_A Fluoroacetate dehalogenase; dehalogease, hydrolase; 1.20A {Burkholderia SP} PDB: 1y37_A | Back alignment and structure |
|---|
Probab=99.06 E-value=5.4e-14 Score=146.77 Aligned_cols=109 Identities=17% Similarity=0.330 Sum_probs=77.4
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
+.|+||++||.+.+ ...|......|+ +||.|+++|+|| +|.+..............+++.+.+..+++. ++.
T Consensus 24 ~~p~vv~lHG~~~~--~~~~~~~~~~l~-~g~~v~~~D~~G---~G~s~~~~~~~~~~~~~~~~~~~~l~~~l~~--l~~ 95 (304)
T 3b12_A 24 SGPALLLLHGFPQN--LHMWARVAPLLA-NEYTVVCADLRG---YGGSSKPVGAPDHANYSFRAMASDQRELMRT--LGF 95 (304)
Confidence 45789999997764 446666777787 899999999998 5554432110001222344444444444443 345
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
+++.|+|||+||.+++.++.++|++++++|+.+|...
T Consensus 96 ~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 132 (304)
T 3b12_A 96 ERFHLVGHARGGRTGHRMALDHPDSVLSLAVLDIIPT 132 (304)
Confidence 6899999999999999999999999999999998654
|
| >3qmv_A Thioesterase, REDJ; alpha/beta hydrolase fold, hydrolase; 2.12A {Streptomyces coelicolor} PDB: 3qmw_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-12 Score=133.95 Aligned_cols=184 Identities=10% Similarity=0.011 Sum_probs=107.3
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
..|.||++||.+++ ...|......|++ ||.|+++|+|| +|.+... .....++++.+.+..+++.- .+.
T Consensus 50 ~~~~lvllHG~~~~--~~~~~~l~~~L~~-~~~v~~~D~~G---~G~S~~~-----~~~~~~~~~a~~~~~~l~~~-~~~ 117 (280)
T 3qmv_A 50 APLRLVCFPYAGGT--VSAFRGWQERLGD-EVAVVPVQLPG---RGLRLRE-----RPYDTMEPLAEAVADALEEH-RLT 117 (280)
T ss_dssp CSEEEEEECCTTCC--GGGGTTHHHHHCT-TEEEEECCCTT---SGGGTTS-----CCCCSHHHHHHHHHHHHHHT-TCS
T ss_pred CCceEEEECCCCCC--hHHHHHHHHhcCC-CceEEEEeCCC---CCCCCCC-----CCCCCHHHHHHHHHHHHHHh-CCC
Confidence 34889999997764 5567777778876 99999999998 6655322 12234556555555555441 145
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCcee----EEEEeCCccchhhhh-cCCCCCcchhh---hhccCcccc-----ccCCC
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFV----AAAARNPLCNLALMV-GTTDIPDWCYV---ESYGSKGKD-----SFTES 737 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~----a~v~~~pv~~~~~~~-~~~~~~~~~~~---~~~~~~~~~-----~~~~~ 737 (789)
+++.|+|||+||.+++.++.++|++++ .+++.++........ .........+. ..++..... .+...
T Consensus 118 ~~~~lvG~S~Gg~va~~~a~~~p~~~~~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (280)
T 3qmv_A 118 HDYALFGHSMGALLAYEVACVLRRRGAPRPRHLFVSGSRAPHLYGDRADHTLSDTALREVIRDLGGLDDADTLGAAYFDR 197 (280)
T ss_dssp SSEEEEEETHHHHHHHHHHHHHHHTTCCCCSCEEEESCCCGGGCSCCCGGGSCHHHHHHHHHHHTCCC---------CCT
T ss_pred CCEEEEEeCHhHHHHHHHHHHHHHcCCCCceEEEEECCCCCCCcCcccccccCHHHHHHHHHHhCCCChhhhcCHHHHHH
Confidence 789999999999999999999887766 666654332110000 00000000000 000000000 00000
Q ss_pred CC---hhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 738 PS---VEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 738 ~~---~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.. .........+.+ ..+.++++|+|+++|++|..+|++.+..+.+.++.
T Consensus 198 ~~~~~~~~~~~~~~~~~-~~~~~i~~P~l~i~G~~D~~~~~~~~~~~~~~~~~ 249 (280)
T 3qmv_A 198 RLPVLRADLRACERYDW-HPRPPLDCPTTAFSAAADPIATPEMVEAWRPYTTG 249 (280)
T ss_dssp THHHHHHHHHHHHTCCC-CCCCCBCSCEEEEEEEECSSSCHHHHHTTGGGBSS
T ss_pred HHHHHHHHHHHHHhccc-cCCCceecCeEEEEecCCCCcChHHHHHHHHhcCC
Confidence 00 001111112211 22578899999999999999999999888877654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-11 Score=146.69 Aligned_cols=239 Identities=9% Similarity=-0.001 Sum_probs=148.5
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 180 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (789)
.-.++|||++++.... .+.+.++++. .+.....++... +.+..++|||||++|+.....+
T Consensus 18 ~i~~sp~~~~la~~~~---------~g~v~iwd~~-~~~~~~~~~~~~-----~~v~~~~~s~~~~~l~~~~~dg----- 77 (814)
T 3mkq_A 18 GIDFHPTEPWVLTTLY---------SGRVEIWNYE-TQVEVRSIQVTE-----TPVRAGKFIARKNWIIVGSDDF----- 77 (814)
T ss_dssp EEEECSSSSEEEEEET---------TSEEEEEETT-TTEEEEEEECCS-----SCEEEEEEEGGGTEEEEEETTS-----
T ss_pred EEEECCCCCEEEEEeC---------CCEEEEEECC-CCceEEEEecCC-----CcEEEEEEeCCCCEEEEEeCCC-----
Confidence 3356799998887532 2356666652 222233444333 4588999999999999987643
Q ss_pred EEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCC-CCCCCCcCCCCCCCcc
Q 003886 181 QFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST-KGGSSDKDCNSWKGQG 257 (789)
Q Consensus 181 ~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 257 (789)
.+.+| ..++....+.. ..+.| ..+.|||||++|+..+.+.... .|+.... ........+.......
T Consensus 78 ~i~vw~~~~~~~~~~~~~---~~~~v------~~~~~s~~~~~l~~~~~dg~i~--vw~~~~~~~~~~~~~~~~~~v~~~ 146 (814)
T 3mkq_A 78 RIRVFNYNTGEKVVDFEA---HPDYI------RSIAVHPTKPYVLSGSDDLTVK--LWNWENNWALEQTFEGHEHFVMCV 146 (814)
T ss_dssp EEEEEETTTCCEEEEEEC---CSSCE------EEEEECSSSSEEEEEETTSEEE--EEEGGGTSEEEEEEECCSSCEEEE
T ss_pred eEEEEECCCCcEEEEEec---CCCCE------EEEEEeCCCCEEEEEcCCCEEE--EEECCCCceEEEEEcCCCCcEEEE
Confidence 45666 34444433332 11222 7899999999999877654332 2332111 1111222333444556
Q ss_pred eeeC-CcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEee--CCCCCccEEEEEeecCCceeeeeeeeccCC
Q 003886 258 DWEE-DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP--LNEGLHQYLVFVGWSSETRKLGIKYCYNRP 334 (789)
Q Consensus 258 ~~~~-d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP--Dg~~~~~~l~f~~~~~~~~~~g~~~~~~~~ 334 (789)
.|.+ +....+++..+..|.+||+.+++............+..+.|+| ||+. |+..+ ..
T Consensus 147 ~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----l~~~~---------------~d 207 (814)
T 3mkq_A 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPY----MITAS---------------DD 207 (814)
T ss_dssp EEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCE----EEEEC---------------TT
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCE----EEEEe---------------CC
Confidence 7888 5444455666789999999877543331122335677899999 8886 66554 22
Q ss_pred cceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 335 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 335 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
..|.++|+. .......+..+...+...+|+|||+.|+..+.+. .|++||+.++
T Consensus 208 g~i~~~d~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------~v~vwd~~~~ 260 (814)
T 3mkq_A 208 LTIKIWDYQ----------------TKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG-----------TLKIWNSSTY 260 (814)
T ss_dssp SEEEEEETT----------------TTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS-----------CEEEEETTTC
T ss_pred CEEEEEECC----------------CCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC-----------eEEEEECCCC
Confidence 368888872 2233455666667788999999999888776543 4889998775
Q ss_pred CC
Q 003886 415 GN 416 (789)
Q Consensus 415 ~~ 416 (789)
..
T Consensus 261 ~~ 262 (814)
T 3mkq_A 261 KV 262 (814)
T ss_dssp SE
T ss_pred cE
Confidence 43
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.8e-11 Score=128.19 Aligned_cols=272 Identities=8% Similarity=0.028 Sum_probs=157.8
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
.++|||+.++-. ...+.+.++++.. +.....+.... ..+...+|||+|++|+.....+ ..
T Consensus 62 ~~s~d~~~l~s~---------s~Dg~v~iWd~~~-~~~~~~~~~~~-----~~v~~~~~s~~~~~l~s~~~d~-----~v 121 (340)
T 1got_B 62 HWGTDSRLLLSA---------SQDGKLIIWDSYT-TNKVHAIPLRS-----SWVMTCAYAPSGNYVACGGLDN-----IC 121 (340)
T ss_dssp EECTTSSEEEEE---------ETTTEEEEEETTT-CCEEEEEECSS-----SCEEEEEECTTSSEEEEEETTC-----EE
T ss_pred EECCCCCEEEEE---------eCCCcEEEEECCC-CCcceEeecCC-----ccEEEEEECCCCCEEEEEeCCC-----eE
Confidence 346888766532 2234566666532 22222222222 4577889999999999876543 45
Q ss_pred EEec--CCc-eeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCccee
Q 003886 183 ELWS--QSQ-LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (789)
Q Consensus 183 ~i~~--~~~-~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (789)
.+|+ .++ ..+......+..+.+ ..+.|+|+++ |+..+.+.... .|+............+........|
T Consensus 122 ~iw~~~~~~~~~~~~~~~~~h~~~v------~~~~~~~~~~-l~s~s~d~~i~--~wd~~~~~~~~~~~~h~~~v~~~~~ 192 (340)
T 1got_B 122 SIYNLKTREGNVRVSRELAGHTGYL------SCCRFLDDNQ-IVTSSGDTTCA--LWDIETGQQTTTFTGHTGDVMSLSL 192 (340)
T ss_dssp EEEETTTCSBSCEEEEEEECCSSCE------EEEEEEETTE-EEEEETTSCEE--EEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEEECccCCCcceeEEEecCCCccE------EEEEECCCCc-EEEEECCCcEE--EEECCCCcEEEEEcCCCCceEEEEE
Confidence 6662 211 112221111222233 6889999986 66665554322 3443222222222334444445667
Q ss_pred eCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEE
Q 003886 260 EEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339 (789)
Q Consensus 260 ~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~ 339 (789)
.++....+++..+..|.+||+.+++..... ......+..++|+|||+. |+..+ .+..|.+
T Consensus 193 ~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~-~~h~~~v~~v~~~p~~~~----l~s~s---------------~d~~v~i 252 (340)
T 1got_B 193 APDTRLFVSGACDASAKLWDVREGMCRQTF-TGHESDINAICFFPNGNA----FATGS---------------DDATCRL 252 (340)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCSEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCeeEEEE-cCCcCCEEEEEEcCCCCE----EEEEc---------------CCCcEEE
Confidence 777555556667889999999988765431 233446788999999987 66655 2336788
Q ss_pred EecccccchhhhhhhhcCCCCCCC-eeecCCC--CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 340 VRVSLYKSEASELELKESSSEDLP-VVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~--~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
+|+ .++. ...+... ...+...+|||||+.|+..+.+ ..|.+||+.++..
T Consensus 253 wd~-----------------~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-----------~~i~vwd~~~~~~ 304 (340)
T 1got_B 253 FDL-----------------RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-----------FNCNVWDALKADR 304 (340)
T ss_dssp EET-----------------TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT-----------SEEEEEETTTCCE
T ss_pred EEC-----------------CCCcEEEEEccCCcccceEEEEECCCCCEEEEECCC-----------CeEEEEEcccCcE
Confidence 887 3332 2233222 2346788999999998876644 2599999876443
Q ss_pred CCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 417 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 417 ~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
.....+ +...+..+.|+|||+.| +++..++...||
T Consensus 305 ~~~~~~-------------------h~~~v~~~~~s~dg~~l-~s~s~D~~i~iW 339 (340)
T 1got_B 305 AGVLAG-------------------HDNRVSCLGVTDDGMAV-ATGSWDSFLKIW 339 (340)
T ss_dssp EEEEEC-------------------CSSCEEEEEECTTSSCE-EEEETTSCEEEE
T ss_pred eeEeec-------------------CCCcEEEEEEcCCCCEE-EEEcCCccEEec
Confidence 211000 01134467899999855 566677777776
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.35 E-value=3.2e-11 Score=132.41 Aligned_cols=273 Identities=7% Similarity=0.015 Sum_probs=157.8
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~ 235 (789)
.....|+|||++|+.....+ .+.+|+-......... ....+.| ..+.|+|||+.|+..+.+.... .
T Consensus 100 ~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~-~~h~~~v------~~~~~~~~~~~l~s~s~d~~i~--i 165 (420)
T 3vl1_A 100 TAVDTAKLQMRRFILGTTEG-----DIKVLDSNFNLQREID-QAHVSEI------TKLKFFPSGEALISSSQDMQLK--I 165 (420)
T ss_dssp EEEEEECSSSCEEEEEETTS-----CEEEECTTSCEEEEET-TSSSSCE------EEEEECTTSSEEEEEETTSEEE--E
T ss_pred eEEEEEecCCCEEEEEECCC-----CEEEEeCCCcceeeec-ccccCcc------EEEEECCCCCEEEEEeCCCeEE--E
Confidence 44567999999999886653 4567732222222221 1222333 7899999999998887665332 3
Q ss_pred ccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCC--C--------------------
Q 003886 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP--K-------------------- 293 (789)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~--~-------------------- 293 (789)
|+............+........|.++....+++..+..|.+||+.+++........ .
T Consensus 166 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 245 (420)
T 3vl1_A 166 WSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEI 245 (420)
T ss_dssp EETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGG
T ss_pred EeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeec
Confidence 443333333333445555556778888666666777888999999988765441110 0
Q ss_pred -CCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecC-CC
Q 003886 294 -SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLT-ES 370 (789)
Q Consensus 294 -~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt-~~ 370 (789)
...+..+.|+|||+. |+..+ ....|.++|+ .++. ...+. .+
T Consensus 246 ~~~~v~~~~~s~~~~~----l~~~~---------------~dg~i~i~d~-----------------~~~~~~~~~~~~~ 289 (420)
T 3vl1_A 246 STSKKNNLEFGTYGKY----VIAGH---------------VSGVITVHNV-----------------FSKEQTIQLPSKF 289 (420)
T ss_dssp CCCCCCTTCSSCTTEE----EEEEE---------------TTSCEEEEET-----------------TTCCEEEEECCTT
T ss_pred ccCcccceEEcCCCCE----EEEEc---------------CCCeEEEEEC-----------------CCCceeEEccccc
Confidence 123445677888886 65554 2336888887 3333 33343 34
Q ss_pred CCccCcceecCCCC-EEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCC
Q 003886 371 ISSAFFPRFSPDGK-FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 449 (789)
Q Consensus 371 ~~~~~~p~~SpDG~-~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~ 449 (789)
...+...+|+|||+ .|+..+.+ ..|++||+.+++..... +. .... ..+..
T Consensus 290 ~~~v~~~~~~~~~~~~l~~g~~d-----------g~i~vwd~~~~~~~~~~-----~~----~~~~--------~~v~~- 340 (420)
T 3vl1_A 290 TCSCNSLTVDGNNANYIYAGYEN-----------GMLAQWDLRSPECPVGE-----FL----INEG--------TPINN- 340 (420)
T ss_dssp SSCEEEEEECSSCTTEEEEEETT-----------SEEEEEETTCTTSCSEE-----EE----ESTT--------SCEEE-
T ss_pred CCCceeEEEeCCCCCEEEEEeCC-----------CeEEEEEcCCCcCchhh-----hh----ccCC--------CCceE-
Confidence 56788999999999 66555533 36999999875431100 00 0000 01122
Q ss_pred ccccCCCEEEEEEEeCCeEEEEEEECCC--------CcEEEecCCCCCceeEEeeecCC---EEEEEEeC
Q 003886 450 PWLSDGCTMLLSSIWGSSQVIISVNVSS--------GELLRITPAESNFSWSLLTLDGD---NIIAVSSS 508 (789)
Q Consensus 450 ~ws~Dg~~l~~~~~~~~~~~l~~~dl~t--------g~~~~lt~~~~~~~~~~~s~dg~---~l~~~~ss 508 (789)
.+.++++ +++++..++...+|.+.... .....+......+....|++++. .++++.+.
T Consensus 341 ~~~~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~ 409 (420)
T 3vl1_A 341 VYFAAGA-LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKN 409 (420)
T ss_dssp EEEETTE-EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETT
T ss_pred EEeCCCC-EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCC
Confidence 3556776 55666666666666554311 11223333333445567888887 67766653
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.34 E-value=5e-11 Score=131.51 Aligned_cols=290 Identities=11% Similarity=0.000 Sum_probs=165.9
Q ss_pred EEeCCCCCeEEEEecCCC------------CCCeEEEEec-CCceeEEEe--cCCCccccccCCCcccceeecCCCCEEE
Q 003886 159 VVPSPSGSKLLVVRNPEN------------ESPIQFELWS-QSQLEKEFH--VPQTVHGSVYADGWFEGISWNSDETLIA 223 (789)
Q Consensus 159 ~~~SPdG~~la~~~~~~~------------~~~~~~~i~~-~~~~~~~~~--~~~~~~g~v~~d~~~~~~~wSpDg~~la 223 (789)
|.|+|+++.++++..... +...++.++. ++....+.. ..... ..++|+| +++++
T Consensus 69 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~----------~~~~~s~-~~~~~ 137 (433)
T 3bws_A 69 PVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTGFQP----------KSVRFID-NTRLA 137 (433)
T ss_dssp ECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECSSCB----------CCCEESS-SSEEE
T ss_pred eeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCCCCc----------eEEEEeC-CCeEE
Confidence 449999888877654321 1124555542 232222222 22222 5799999 45566
Q ss_pred EEeecCCCCCCCccCCCCCCCC-----CCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccc
Q 003886 224 YVAEEPSPSKPTFSLGSTKGGS-----SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVG 298 (789)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~ 298 (789)
++..... ....|+........ ....+........|.++....+.+.....|++||+++++..... ......+.
T Consensus 138 ~~~~~~~-~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~-~~~~~~~~ 215 (433)
T 3bws_A 138 IPLLEDE-GMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATV-DLTGKWSK 215 (433)
T ss_dssp EEBTTSS-SEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE-ECSSSSEE
T ss_pred EEeCCCC-eEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE-cCCCCCee
Confidence 6543321 11223322211111 01112222223456555333334445688999999988765441 22334677
Q ss_pred eEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcce
Q 003886 299 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPR 378 (789)
Q Consensus 299 ~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~ 378 (789)
.++|+|||+. +++++.. ...|+++|+ .+++..............+
T Consensus 216 ~~~~~~~~~~----l~~~~~~--------------~~~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~ 260 (433)
T 3bws_A 216 ILLYDPIRDL----VYCSNWI--------------SEDISVIDR-----------------KTKLEIRKTDKIGLPRGLL 260 (433)
T ss_dssp EEEEETTTTE----EEEEETT--------------TTEEEEEET-----------------TTTEEEEECCCCSEEEEEE
T ss_pred EEEEcCCCCE----EEEEecC--------------CCcEEEEEC-----------------CCCcEEEEecCCCCceEEE
Confidence 8999999997 6655521 236899998 4555444444444578899
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEE
Q 003886 379 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 458 (789)
Q Consensus 379 ~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l 458 (789)
|+|||+.|+..+....... .....|++||+.+++........ ..+..+.|+|||+.+
T Consensus 261 ~~~~g~~l~~~~~~~~~~~---~~dg~i~~~d~~~~~~~~~~~~~--------------------~~~~~~~~~~~g~~l 317 (433)
T 3bws_A 261 LSKDGKELYIAQFSASNQE---SGGGRLGIYSMDKEKLIDTIGPP--------------------GNKRHIVSGNTENKI 317 (433)
T ss_dssp ECTTSSEEEEEEEESCTTC---SCCEEEEEEETTTTEEEEEEEEE--------------------ECEEEEEECSSTTEE
T ss_pred EcCCCCEEEEEECCCCccc---cCCCeEEEEECCCCcEEeeccCC--------------------CCcceEEECCCCCEE
Confidence 9999999888775431100 02347999998875432111000 012356899999988
Q ss_pred EEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCC-----------CeEEEEeec
Q 003886 459 LLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDV-----------PQVKYGYFV 521 (789)
Q Consensus 459 ~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p-----------~~i~~~~~~ 521 (789)
+++...++ .|+.+|+.+++...............++++|+.++........+ ..+++.++.
T Consensus 318 ~~~~~~~~--~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 318 YVSDMCCS--KIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp EEEETTTT--EEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred EEEecCCC--EEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence 88765555 56667888888766555444455668899999887777654432 256666654
|
| >4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.9e-12 Score=126.83 Aligned_cols=168 Identities=10% Similarity=0.067 Sum_probs=102.7
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHH--CCcEEEEEcCCCCCC------CCchhhccCCCC-
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS--VGYSLLIVNYRGSLG------FGEEALQSLPGK- 646 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~--~Gy~V~~~d~rGs~G------~G~~~~~~~~~~- 646 (789)
+...++.|+ .+.+++||++||.+.. ...+......|.. .++.+++|+-.-.+. .|..|.......
T Consensus 25 l~y~ii~P~----~~~~~~VI~LHG~G~~--~~dl~~l~~~l~~~~~~~~~i~P~Ap~~~~~~~~~~~~~~Wf~~~~~~~ 98 (246)
T 4f21_A 25 MNYELMEPA----KQARFCVIWLHGLGAD--GHDFVDIVNYFDVSLDEIRFIFPHADIIPVTINMGMQMRAWYDIKSLDA 98 (246)
T ss_dssp CCEEEECCS----SCCCEEEEEEEC--CC--CCCGGGGGGGCCSCCTTEEEEEECGGGSCTTTHHHHHHHSCTTCCCC--
T ss_pred cCceEeCCC----CcCCeEEEEEcCCCCC--HHHHHHHHHHhhhcCCCeEEEeCCCCccccccCCCCCcccccccccccc
Confidence 556678885 3456899999996553 3344444444432 368889887531100 011111110000
Q ss_pred ------CCcccHHHHHHHHHHH----HHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCC
Q 003886 647 ------VGSQDVNDVLTAIDHV----IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTD 716 (789)
Q Consensus 647 ------~~~~~~~D~~~~i~~l----~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~ 716 (789)
.....+.+..+.++.+ .+. .+|.+||.++|+|+||++++.++.++|++|+++|+.++........
T Consensus 99 ~~~~~~~d~~~i~~~~~~i~~li~~~~~~-gi~~~ri~l~GfSqGg~~a~~~~~~~~~~~a~~i~~sG~lp~~~~~---- 173 (246)
T 4f21_A 99 NSLNRVVDVEGINSSIAKVNKLIDSQVNQ-GIASENIILAGFSQGGIIATYTAITSQRKLGGIMALSTYLPAWDNF---- 173 (246)
T ss_dssp -CGGGGSCCC-CHHHHHHHHHHHHHHHHC--CCGGGEEEEEETTTTHHHHHHHTTCSSCCCEEEEESCCCTTHHHH----
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHc-CCChhcEEEEEeCchHHHHHHHHHhCccccccceehhhccCccccc----
Confidence 0011122333333333 333 3899999999999999999999999999999999998854211100
Q ss_pred CCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 717 IPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.. +. .....++|+|++||++|++||++.+.++++.|++
T Consensus 174 ----------~~-------------------~~----~~~~~~~Pvl~~HG~~D~vVp~~~~~~~~~~L~~ 211 (246)
T 4f21_A 174 ----------KG-------------------KI----TSINKGLPILVCHGTDDQVLPEVLGHDLSDKLKV 211 (246)
T ss_dssp ----------ST-------------------TC----CGGGTTCCEEEEEETTCSSSCHHHHHHHHHHHHT
T ss_pred ----------cc-------------------cc----cccccCCchhhcccCCCCccCHHHHHHHHHHHHH
Confidence 00 00 0112357999999999999999999999998864
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.34 E-value=6.5e-11 Score=124.14 Aligned_cols=264 Identities=12% Similarity=0.081 Sum_probs=158.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
..+...+|||||++|+.....+ ...+|+ .++..+.+... .+.+ ..+.|+||++.|+..+.+...
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg-----~v~lWd~~~~~~~~~~~~~---~~~v------~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSG-----RVELWNYETQVEVRSIQVT---ETPV------RAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTS-----EEEEEETTTTEEEEEEECC---SSCE------EEEEEEGGGTEEEEEETTSEE
T ss_pred CceEEEEECCCCCEEEEEcCCC-----cEEEEECCCCceeEEeecc---CCcE------EEEEEeCCCCEEEEECCCCEE
Confidence 4588999999999999876554 567773 34333333321 1122 689999999999988776543
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc-eEeccCCCCCCccceEEEeeCCCCCc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-VQAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
+ .|+............+........|.++....+++..+..|.+||+.++. ..... ......+..++|+|++..
T Consensus 80 ~--vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~-- 154 (304)
T 2ynn_A 80 R--VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF-EGHEHFVMCVAFNPKDPS-- 154 (304)
T ss_dssp E--EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE-CCCCSCEEEEEECTTCTT--
T ss_pred E--EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh-cccCCcEEEEEECCCCCC--
Confidence 3 34433333223334455556667788886666677778899999998873 33321 233446788999995443
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecC-CCCCccCcceecC--CCCEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSP--DGKFLV 387 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~Sp--DG~~la 387 (789)
++.++. .+..|.++|+. .......+. .....+....|+| |+++|+
T Consensus 155 --~l~sgs--------------~D~~v~iwd~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (304)
T 2ynn_A 155 --TFASGC--------------LDRTVKVWSLG----------------QSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (304)
T ss_dssp --EEEEEE--------------TTSEEEEEETT----------------CSSCSEEEECCCTTCEEEEEECCSTTCCEEE
T ss_pred --EEEEEe--------------CCCeEEEEECC----------------CCCccceeccCCcCcEEEEEEEEcCCCCEEE
Confidence 444442 22367788872 222222332 2334455667765 788887
Q ss_pred EEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCe
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 467 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 467 (789)
..+.+. .|.+||+.++.......+. ...+....|+|+++. ++++..++.
T Consensus 203 s~s~D~-----------~i~iWd~~~~~~~~~~~~h-------------------~~~v~~~~~~p~~~~-l~s~s~Dg~ 251 (304)
T 2ynn_A 203 TASDDL-----------TIKIWDYQTKSCVATLEGH-------------------MSNVSFAVFHPTLPI-IISGSEDGT 251 (304)
T ss_dssp EEETTS-----------EEEEEETTTTEEEEEEECC-------------------SSCEEEEEECSSSSE-EEEEETTSC
T ss_pred EEcCCC-----------eEEEEeCCCCccceeeCCC-------------------CCCEEEEEECCCCCE-EEEEcCCCe
Confidence 766543 5999998775432110000 012345679999984 466666666
Q ss_pred EEEEEEECCCCcEEEecCCC-CCceeEEeeecCCE
Q 003886 468 QVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDN 501 (789)
Q Consensus 468 ~~l~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg~~ 501 (789)
..|| |+.+++..+....+ .......++++++.
T Consensus 252 i~iW--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (304)
T 2ynn_A 252 LKIW--NSSTYKVEKTLNVGLERSWCIATHPTGRK 284 (304)
T ss_dssp EEEE--ETTTCCEEEEECCSSSSEEEEEECTTCGG
T ss_pred EEEE--ECCCCceeeeccCCCccEEEEEECCCCCc
Confidence 6665 77788776554433 23333455676654
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-10 Score=124.91 Aligned_cols=199 Identities=15% Similarity=0.151 Sum_probs=129.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
..+...+|||||++|+..+..+ .+.+|+ .++..+.+. +..+.| ..+.|+||++.++.++..
T Consensus 128 ~~V~~v~~spdg~~l~sgs~d~-----~i~iwd~~~~~~~~~~~---~h~~~V------~~~~~~~~~~~~l~s~s~--- 190 (344)
T 4gqb_B 128 DIVSTVSVLSSGTQAVSGSKDI-----CIKVWDLAQQVVLSSYR---AHAAQV------TCVAASPHKDSVFLSCSE--- 190 (344)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEEC---CCSSCE------EEEEECSSCTTEEEEEET---
T ss_pred CCEEEEEECCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEc---CcCCce------EEEEecCCCCCceeeecc---
Confidence 4588999999999999876654 466773 444333332 222333 789999999765544322
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEec-cCCCCCCccceEEEeeCCCCCc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l-~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
+..|.+||+.+++.... ........+..++|+|++..
T Consensus 191 ----------------------------------------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-- 228 (344)
T 4gqb_B 191 ----------------------------------------DNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSE-- 228 (344)
T ss_dssp ----------------------------------------TSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTT--
T ss_pred ----------------------------------------ccccccccccccceeeeeecceeeccceeeeecCCCCc--
Confidence 25688999998875443 21122334678999998877
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCE-EEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKF-LVFL 389 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~-la~~ 389 (789)
++.++. .+..|.++|+. .+.....+..+...+...+|||||.. |+..
T Consensus 229 --~l~sg~--------------~dg~v~~wd~~----------------~~~~~~~~~~h~~~v~~v~fsp~g~~~lasg 276 (344)
T 4gqb_B 229 --VFVFGD--------------ENGTVSLVDTK----------------STSCVLSSAVHSQCVTGLVFSPHSVPFLASL 276 (344)
T ss_dssp --EEEEEE--------------TTSEEEEEESC----------------C--CCEEEECCSSCEEEEEECSSSSCCEEEE
T ss_pred --ceEEec--------------cCCcEEEEECC----------------CCcEEEEEcCCCCCEEEEEEccCCCeEEEEE
Confidence 666552 22368888872 33345677777778889999999964 5555
Q ss_pred ecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEE
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (789)
+.+. .|++||+.+++...+ .+ +...+..+.|+|||+.|+.++..++...
T Consensus 277 s~D~-----------~i~vwd~~~~~~~~~-~~-------------------H~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 277 SEDC-----------SLAVLDSSLSELFRS-QA-------------------HRDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp ETTS-----------CEEEECTTCCEEEEE-CC-------------------CSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred eCCC-----------eEEEEECCCCcEEEE-cC-------------------CCCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 5432 589999877543211 01 1113456789999998888888888777
Q ss_pred EEEEE
Q 003886 470 IISVN 474 (789)
Q Consensus 470 l~~~d 474 (789)
+|.++
T Consensus 326 ~w~v~ 330 (344)
T 4gqb_B 326 HHVVP 330 (344)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 77654
|
| >1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase directed evolution; 1.50A {Bacillus subtilis} SCOP: c.69.1.1 PDB: 1c7j_A 1c7i_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-13 Score=151.98 Aligned_cols=208 Identities=16% Similarity=0.167 Sum_probs=125.3
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch-hhHHHHHHHHHCC-cEEEEEcCC-CCCCCCchhhccCCCC
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVG-YSLLIVNYR-GSLGFGEEALQSLPGK 646 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~~~~~~~la~~G-y~V~~~d~r-Gs~G~G~~~~~~~~~~ 646 (789)
+.|+.. ..++.|.. ..+++|+||++|||++..... .+......|+++| ++|+.+||| |..|++...... ...
T Consensus 79 ~edcL~--l~v~~P~~--~~~~~PviV~iHGGg~~~g~~~~~~~~~~~la~~g~~vvv~~nYRlg~~Gf~~~~~~~-~~~ 153 (489)
T 1qe3_A 79 SEDCLY--VNVFAPDT--PSQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFD-EAY 153 (489)
T ss_dssp CSCCCE--EEEEEECS--SCCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHHHHSCCCTTTC-TTS
T ss_pred CCCCCE--EEEEeCCC--CCCCCCEEEEECCCccccCCCCCcccCHHHHHhcCCEEEEecCccCcccccCcccccc-ccC
Confidence 345544 45777864 234589999999988543222 2222356677665 999999999 544565432110 112
Q ss_pred CCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhC--CCceeEEEEeCCccchhhhhcCCCCCcch
Q 003886 647 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCNLALMVGTTDIPDWC 721 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~--p~~~~a~v~~~pv~~~~~~~~~~~~~~~~ 721 (789)
.+...+.|+.++++|+.++. ..|++||+|+|+|+||++++.++... +++|+++|+.+|..++........ ....
T Consensus 154 ~~n~gl~D~~~al~wv~~~i~~fggDp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~~~~~~~~~~-~~~~ 232 (489)
T 1qe3_A 154 SDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGASRTMTKEQAAS-TAAA 232 (489)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCCCCBCHHHHHH-HHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHhCCCcceeEEEEechHHHHHHHHHhCccccchHHHHHHhCCCCCCCCHHHHHH-HHHH
Confidence 33445889999999998862 36999999999999999999887753 478999999999764321110000 0001
Q ss_pred hhhhccCc--cccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 722 YVESYGSK--GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 722 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
+...++.. .++++...+..+. +...+++.+......|.+++++..|..+.+++..+++++.+
T Consensus 233 ~~~~~g~~~~~~~~Lr~~~~~~l---~~~~~~~~~~~~~~~~~~~~~p~~D~~~~~~~~~~~~~~~~ 296 (489)
T 1qe3_A 233 FLQVLGINESQLDRLHTVAAEDL---LKAADQLRIAEKENIFQLFFQPALDPKTLPEEPEKSIAEGA 296 (489)
T ss_dssp HHHHHTCCTTCGGGGGTSCHHHH---HHHHHHHHTSTTCCTTSCSSCCBCBTTTBCSCHHHHHHTTT
T ss_pred HHHHcCCCHHHHHHHHcCCHHHH---HHHHHHhhhccccccCCccceEeECCeecCcCHHHHHhcCC
Confidence 11222221 2333333332221 11222222222334456778888888888888888887654
|
| >3guu_A Lipase A; protein structure, hydrolase; HET: 1PE; 2.10A {Candida antarctica} PDB: 2veo_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-11 Score=133.37 Aligned_cols=134 Identities=16% Similarity=0.095 Sum_probs=88.2
Q ss_pred eeecCCCee--EEEEEEecCCCCCCCCCcEEEEEcCCCCCC--Cchh----------------hH-HHHHHH-HHCCcEE
Q 003886 567 NLTKGAQKP--FEAIFVSSSHKKDCSCDPLIVVLHGGPHSV--SLSS----------------YS-KSLAFL-SSVGYSL 624 (789)
Q Consensus 567 ~~~~~~g~~--l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~--~~~~----------------~~-~~~~~l-a~~Gy~V 624 (789)
..++.+|.+ ..+.++.|.+. ..+.|+|.+.||..+.. ...+ +. ..+..+ +++||+|
T Consensus 81 ~std~~G~p~~~~gtv~~P~~~--~~~~pvvs~~hgt~g~~~~CaPS~~~~~~~~~~~~~~~~~e~~~~~~~~l~~G~~V 158 (462)
T 3guu_A 81 RTTNTQNEAVADVATVWIPAKP--ASPPKIFSYQVYEDATALDCAPSYSYLTGLDQPNKVTAVLDTPIIIGWALQQGYYV 158 (462)
T ss_dssp EEECTTSCEEEEEEEEEECSSC--CSSCEEEEEECCCCCCSGGGCHHHHHBSCSCCTTGGGGSTHHHHHHHHHHHTTCEE
T ss_pred EEECCCCCEEEEEEEEEecCCC--CCCCcEEEEeCCcccCCCCcCCccccccCCCccccchhhhhHHHHHHHHHhCCCEE
Confidence 345566754 78899999853 23589999999954421 1111 11 234566 8999999
Q ss_pred EEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC-CCccEEEEEcCccHHHHHHHHHhC----CC-ceeE
Q 003886 625 LIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA-NPSKVTVVGGSHGGFLTTHLIGQA----PD-KFVA 698 (789)
Q Consensus 625 ~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~-d~~rv~l~G~S~GG~~a~~~~~~~----p~-~~~a 698 (789)
+++||+|. |..+.. +..+..++.+.++.+.+...+ ...+++++|||+||..+++++... |+ .+++
T Consensus 159 v~~Dy~G~---G~~y~~------~~~~~~~vlD~vrAa~~~~~~~~~~~v~l~G~S~GG~aal~aa~~~~~yapel~~~g 229 (462)
T 3guu_A 159 VSSDHEGF---KAAFIA------GYEEGMAILDGIRALKNYQNLPSDSKVALEGYSGGAHATVWATSLAESYAPELNIVG 229 (462)
T ss_dssp EEECTTTT---TTCTTC------HHHHHHHHHHHHHHHHHHTTCCTTCEEEEEEETHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred EEecCCCC---CCcccC------CcchhHHHHHHHHHHHHhccCCCCCCEEEEeeCccHHHHHHHHHhChhhcCccceEE
Confidence 99999984 332211 112223445555554443223 358999999999999999987753 33 6899
Q ss_pred EEEeCCccchhhh
Q 003886 699 AAARNPLCNLALM 711 (789)
Q Consensus 699 ~v~~~pv~~~~~~ 711 (789)
+++.++..|+...
T Consensus 230 ~~~~~~p~dl~~~ 242 (462)
T 3guu_A 230 ASHGGTPVSAKDT 242 (462)
T ss_dssp EEEESCCCBHHHH
T ss_pred EEEecCCCCHHHH
Confidence 9999998887443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.32 E-value=3.8e-10 Score=121.28 Aligned_cols=250 Identities=11% Similarity=0.099 Sum_probs=144.0
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCCC-CccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENE-NSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
++|||+.++... ....+.++++.+... ....+.... ..+...+|+|||+.|+.....+ .+
T Consensus 16 ~s~~~~~l~~~~---------~d~~v~i~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~l~~~~~dg-----~i 76 (372)
T 1k8k_C 16 WNKDRTQIAICP---------NNHEVHIYEKSGNKWVQVHELKEHN-----GQVTGVDWAPDSNRIVTCGTDR-----NA 76 (372)
T ss_dssp ECTTSSEEEEEC---------SSSEEEEEEEETTEEEEEEEEECCS-----SCEEEEEEETTTTEEEEEETTS-----CE
T ss_pred ECCCCCEEEEEe---------CCCEEEEEeCCCCcEEeeeeecCCC-----CcccEEEEeCCCCEEEEEcCCC-----eE
Confidence 468999887642 234566666633210 222333232 4588899999999999876543 24
Q ss_pred EEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceee
Q 003886 183 ELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (789)
Q Consensus 183 ~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (789)
.+| ..++........ ...+.+ ..+.|+|||+.|+....+
T Consensus 77 ~vwd~~~~~~~~~~~~~-~~~~~v------~~~~~~~~~~~l~~~~~d-------------------------------- 117 (372)
T 1k8k_C 77 YVWTLKGRTWKPTLVIL-RINRAA------RCVRWAPNEKKFAVGSGS-------------------------------- 117 (372)
T ss_dssp EEEEEETTEEEEEEECC-CCSSCE------EEEEECTTSSEEEEEETT--------------------------------
T ss_pred EEEECCCCeeeeeEEee-cCCCce------eEEEECCCCCEEEEEeCC--------------------------------
Confidence 445 344433333321 112222 789999999998886433
Q ss_pred CCcccccCCccCceEEEEEccCCc----eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcc
Q 003886 261 EDWGETYAGKRQPSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 336 (789)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~----~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~ 336 (789)
..|.+||+.+++ ...+. ......+..+.|+||++. |+..+. ...
T Consensus 118 ------------~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----l~~~~~---------------dg~ 165 (372)
T 1k8k_C 118 ------------RVISICYFEQENDWWVCKHIK-KPIRSTVLSLDWHPNSVL----LAAGSC---------------DFK 165 (372)
T ss_dssp ------------SSEEEEEEETTTTEEEEEEEC-TTCCSCEEEEEECTTSSE----EEEEET---------------TSC
T ss_pred ------------CEEEEEEecCCCcceeeeeee-cccCCCeeEEEEcCCCCE----EEEEcC---------------CCC
Confidence 457888888776 23331 223456789999999987 666552 235
Q ss_pred eEEEecccccchh-hhhhhhcC-CCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 337 LYAVRVSLYKSEA-SELELKES-SSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 337 l~~~d~~~~~~~~-~~~~~~~~-~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
|+++|+....... ........ .........+..+...+....|+|||+.|+..+.+. .|.+||+.++
T Consensus 166 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------~i~i~d~~~~ 234 (372)
T 1k8k_C 166 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS-----------TVCLADADKK 234 (372)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT-----------EEEEEEGGGT
T ss_pred EEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCC-----------EEEEEECCCC
Confidence 7777752100000 00000000 001233445556666788999999999888777543 5999998765
Q ss_pred CCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003886 415 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 415 ~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
......... ...+..+.|+|||+.| +.+ .++...+|.++.
T Consensus 235 ~~~~~~~~~-------------------~~~v~~~~~~~~~~~l-~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 235 MAVATLASE-------------------TLPLLAVTFITESSLV-AAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TEEEEEECS-------------------SCCEEEEEEEETTEEE-EEE-TTSSCEEEEEET
T ss_pred ceeEEEccC-------------------CCCeEEEEEecCCCEE-EEE-eCCeEEEEEccC
Confidence 432110000 0123467899999744 444 566777777664
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=8.3e-11 Score=148.04 Aligned_cols=236 Identities=12% Similarity=0.041 Sum_probs=153.2
Q ss_pred cccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEec
Q 003886 209 WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV 288 (789)
Q Consensus 209 ~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l 288 (789)
....+.|||||+.|+....+.... .|+............+........|+++.....++..+..|.+||+.+++...+
T Consensus 963 ~i~~~~~sp~g~~l~~g~~~g~i~--i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~ 1040 (1249)
T 3sfz_A 963 QVSCCCLSPHLEYVAFGDEDGAIK--IIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFL 1040 (1249)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCE--EEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECC
T ss_pred cEEEEEEcCCCCEEEEEcCCCCEE--EEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEE
Confidence 346889999999999887665322 233322222223334455556677888866666666788999999999987766
Q ss_pred cCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecC
Q 003886 289 KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT 368 (789)
Q Consensus 289 ~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt 368 (789)
......+..+.|+||++ ++..+ ....|+++|+. .+.....+.
T Consensus 1041 --~~~~~~v~~~~~~~~~~-----l~~~~---------------~dg~v~vwd~~----------------~~~~~~~~~ 1082 (1249)
T 3sfz_A 1041 --QAHQETVKDFRLLQDSR-----LLSWS---------------FDGTVKVWNVI----------------TGRIERDFT 1082 (1249)
T ss_dssp --BCCSSCEEEEEECSSSE-----EEEEE---------------SSSEEEEEETT----------------TTCCCEEEE
T ss_pred --ecCCCcEEEEEEcCCCc-----EEEEE---------------CCCcEEEEECC----------------CCceeEEEc
Confidence 34455678899999876 44444 12368888882 333455677
Q ss_pred CCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCC
Q 003886 369 ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILS 448 (789)
Q Consensus 369 ~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~ 448 (789)
.+.+.+...+|||||+.|+..+.+. .+.+||+.++.......+.. ..+..
T Consensus 1083 ~~~~~v~~~~~s~d~~~l~s~s~d~-----------~v~iwd~~~~~~~~~l~~h~-------------------~~v~~ 1132 (1249)
T 3sfz_A 1083 CHQGTVLSCAISSDATKFSSTSADK-----------TAKIWSFDLLSPLHELKGHN-------------------GCVRC 1132 (1249)
T ss_dssp CCSSCCCCEEECSSSSSCEEECCSS-----------CCCEECSSSSSCSBCCCCCS-------------------SCEEE
T ss_pred ccCCcEEEEEECCCCCEEEEEcCCC-----------cEEEEECCCcceeeeeccCC-------------------CcEEE
Confidence 7777889999999999998777543 48889987765432211110 12346
Q ss_pred CccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec----------CCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEE
Q 003886 449 NPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT----------PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYG 518 (789)
Q Consensus 449 ~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt----------~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~ 518 (789)
+.|+|||+.| +++..++...+ +|+.+|+..... ...+.+....|++||..++... ..+.+.
T Consensus 1133 ~~~s~dg~~l-at~~~dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~------g~v~vw 1203 (1249)
T 3sfz_A 1133 SAFSLDGILL-ATGDDNGEIRI--WNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG------GYLKWW 1203 (1249)
T ss_dssp EEECSSSSEE-EEEETTSCCCE--EESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES------SSEEEB
T ss_pred EEECCCCCEE-EEEeCCCEEEE--EECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC------CeEEEE
Confidence 6899999865 45555555444 477777654322 1222345568999999886542 357777
Q ss_pred eeccc
Q 003886 519 YFVDK 523 (789)
Q Consensus 519 ~~~~~ 523 (789)
++.++
T Consensus 1204 d~~~g 1208 (1249)
T 3sfz_A 1204 NVATG 1208 (1249)
T ss_dssp CSSSC
T ss_pred ECCCC
Confidence 76544
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-10 Score=128.21 Aligned_cols=266 Identities=12% Similarity=0.071 Sum_probs=165.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
..+...+|||+|+.|+..+..+ .+.+| ..++..+.+.. ..+.| ..++|+|||+.|+..+.+...
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg-----~i~vwd~~~~~~~~~l~~---h~~~V------~~v~~~~~~~~l~sgs~D~~i 174 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDA-----TIKVWDYETGDFERTLKG---HTDSV------QDISFDHSGKLLASCSADMTI 174 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSS-----CEEEEETTTCCCCEEECC---CSSCE------EEEEECTTSSEEEEEETTSCC
T ss_pred CcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCcEEEEEec---cCCcE------EEEEEcCCCCEEEEEeCCCeE
Confidence 4588899999999998876654 45667 34444444332 22233 789999999999988877654
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
. .|+............+........|.++....+++..+..|.+||+.+++..... ......+..+.|+|||+.
T Consensus 175 ~--iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~~~~g~~--- 248 (410)
T 1vyh_C 175 K--LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTL--- 248 (410)
T ss_dssp C--EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSE---
T ss_pred E--EEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-eCCCccEEEEEECCCCCE---
Confidence 3 4443222222233334444445678887655666777899999999988754331 223345678899999986
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCccCcceecCC--------
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPD-------- 382 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpD-------- 382 (789)
|+..+ .+..|.++|+ .++. ...+..+...+....|+|+
T Consensus 249 -l~s~s---------------~D~~v~vwd~-----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 295 (410)
T 1vyh_C 249 -IASCS---------------NDQTVRVWVV-----------------ATKECKAELREHRHVVECISWAPESSYSSISE 295 (410)
T ss_dssp -EEEEE---------------TTSCEEEEET-----------------TTCCEEEEECCCSSCEEEEEECCSCGGGGGGG
T ss_pred -EEEEc---------------CCCeEEEEEC-----------------CCCceeeEecCCCceEEEEEEcCcccccchhh
Confidence 66555 2236778887 3333 3456666667788889987
Q ss_pred ------------CCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCc
Q 003886 383 ------------GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNP 450 (789)
Q Consensus 383 ------------G~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ 450 (789)
|+.|+..+.+ ..|.+||+.++.......+. ...+..+.
T Consensus 296 ~~~~~~~~~~~~g~~l~sgs~D-----------~~i~iwd~~~~~~~~~~~~h-------------------~~~v~~v~ 345 (410)
T 1vyh_C 296 ATGSETKKSGKPGPFLLSGSRD-----------KTIKMWDVSTGMCLMTLVGH-------------------DNWVRGVL 345 (410)
T ss_dssp CCSCC-------CCEEEEEETT-----------SEEEEEETTTTEEEEEEECC-------------------SSCEEEEE
T ss_pred hccccccccCCCCCEEEEEeCC-----------CeEEEEECCCCceEEEEECC-------------------CCcEEEEE
Confidence 5566655543 35999998775432110000 01234668
Q ss_pred cccCCCEEEEEEEeCCeEEEEEEECCCCcE-EEecCCCCCceeEEeeecCCEEEEE
Q 003886 451 WLSDGCTMLLSSIWGSSQVIISVNVSSGEL-LRITPAESNFSWSLLTLDGDNIIAV 505 (789)
Q Consensus 451 ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~~~~~~~s~dg~~l~~~ 505 (789)
|+|+|+.| +++..++...+| |+.+++. ..+......+....|++++..|+..
T Consensus 346 ~~~~g~~l-~s~s~D~~i~vw--d~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sg 398 (410)
T 1vyh_C 346 FHSGGKFI-LSCADDKTLRVW--DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTG 398 (410)
T ss_dssp ECSSSSCE-EEEETTTEEEEE--CCTTSCCCEEEECCSSCEEEEEECSSSSCEEEE
T ss_pred EcCCCCEE-EEEeCCCeEEEE--ECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEE
Confidence 99999865 566666655555 6666654 3343333344555777877765543
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-10 Score=123.94 Aligned_cols=260 Identities=9% Similarity=0.059 Sum_probs=143.5
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCC--CccccccCCCcccceeecCCCCEEEEEeecCCCCCCC
Q 003886 159 VVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQ--TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (789)
Q Consensus 159 ~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~--~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~ 235 (789)
++++++++.++.....+ +++.++ .+++..+.+.... .. ..+.|||||+.+++...
T Consensus 5 ~~~~~~~~~~v~~~~~~----~v~~~d~~~~~~~~~~~~~~~~~~----------~~~~~s~dg~~~~v~~~-------- 62 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPN----NLHVVDVASDTVYKSCVMPDKFGP----------GTAMMAPDNRTAYVLNN-------- 62 (349)
T ss_dssp CCCCTTCEEEEEEETTT----EEEEEETTTTEEEEEEECSSCCSS----------CEEEECTTSSEEEEEET--------
T ss_pred ccccCCCEEEEEeCCCC----eEEEEECCCCcEEEEEecCCCCCC----------ceeEECCCCCEEEEEeC--------
Confidence 46788877665544332 566666 5666666665543 33 68999999987766532
Q ss_pred ccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCC-----CCccceEEEeeCCCCCc
Q 003886 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-----SLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~-----~~~~~~~~wSPDg~~~~ 310 (789)
....|++||+.+++......... ...+..++|+|||+.
T Consensus 63 -----------------------------------~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~-- 105 (349)
T 1jmx_B 63 -----------------------------------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKE-- 105 (349)
T ss_dssp -----------------------------------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSE--
T ss_pred -----------------------------------CCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCE--
Confidence 23679999999887654311111 123578899999998
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCee---ecCCCCCccCcceecCCCCEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV---NLTESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~Lt~~~~~~~~p~~SpDG~~la 387 (789)
|++......... ..+ ......|+++|+ .+++.. ............+|||||+ |+
T Consensus 106 --l~~~~~~~~~~~--~~~-~~~~~~i~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 106 --VYATVNPTQRLN--DHY-VVKPPRLEVFST-----------------ADGLEAKPVRTFPMPRQVYLMRAADDGS-LY 162 (349)
T ss_dssp --EEEEEEEEEECS--SCE-EECCCEEEEEEG-----------------GGGGGBCCSEEEECCSSCCCEEECTTSC-EE
T ss_pred --EEEEcccccccc--ccc-ccCCCeEEEEEC-----------------CCccccceeeeccCCCcccceeECCCCc-EE
Confidence 777653210000 000 011347999998 332211 1111222456677999999 54
Q ss_pred EEecCCCCCCCCccccceeEEeecCCCCCCCc-cccee------------------------eEEeeeeccCCC------
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS-LEKIV------------------------DVIPVVQCAEGD------ 436 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~-t~~~~------------------------~v~~~~~~~~~~------ 436 (789)
. ... .|+++|..+++.... ..... ....+...+...
T Consensus 163 ~-~~~------------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 229 (349)
T 1jmx_B 163 V-AGP------------DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA 229 (349)
T ss_dssp E-ESS------------SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC
T ss_pred E-ccC------------cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccc
Confidence 4 311 288888877654211 10100 000000000000
Q ss_pred -CCccc-----------------cccCCCCCcccc-CCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeee
Q 003886 437 -CFPGL-----------------YSSSILSNPWLS-DGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTL 497 (789)
Q Consensus 437 -~f~g~-----------------~~~~~~~~~ws~-Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~ 497 (789)
...++ .........|+| ||+.+++. ...|+.+|+.+++...............+++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~ 304 (349)
T 1jmx_B 230 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-----LNRLAKYDLKQRKLIKAANLDHTYYCVAFDK 304 (349)
T ss_dssp EEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEECS
T ss_pred ccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-----cCeEEEEECccCeEEEEEcCCCCccceEECC
Confidence 00000 000123456789 99988766 4478999999998765543333334568899
Q ss_pred cCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 498 DGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 498 dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
+|+.|+.. ... ..+.+++..+
T Consensus 305 dg~~l~~~-~~~---~~v~v~d~~~ 325 (349)
T 1jmx_B 305 KGDKLYLG-GTF---NDLAVFNPDT 325 (349)
T ss_dssp SSSCEEEE-SBS---SEEEEEETTT
T ss_pred CCCEEEEe-cCC---CeEEEEeccc
Confidence 99988763 221 5677877654
|
| >3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2e-12 Score=140.87 Aligned_cols=179 Identities=12% Similarity=0.086 Sum_probs=115.3
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcE----EEEEcCCCCCCCCchhhccCCCCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYS----LLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~----V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
.|.....++|.|.++. .+++|+|+++||+.+... ..+...++.|+++|+. |+++|++|+.++..++ .
T Consensus 178 ~g~~~~~~vy~P~~~~-~~~~PvlvllHG~~~~~~-~~~~~~~~~l~~~g~~~p~iVV~~d~~~~~~r~~~~----~--- 248 (403)
T 3c8d_A 178 LKNSRRVWIFTTGDVT-AEERPLAVLLDGEFWAQS-MPVWPVLTSLTHRQQLPPAVYVLIDAIDTTHRAHEL----P--- 248 (403)
T ss_dssp TTEEEEEEEEEC------CCCCEEEESSHHHHHHT-SCCHHHHHHHHHTTSSCSCEEEEECCCSHHHHHHHS----S---
T ss_pred cCCcEEEEEEeCCCCC-CCCCCEEEEeCCHHHhhc-CcHHHHHHHHHHcCCCCCeEEEEECCCCCccccccC----C---
Confidence 5677889999998653 578999999999543111 1233456788888875 9999997622111111 1
Q ss_pred CcccHHHH--HHHHHHHHHcC--CCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhh
Q 003886 648 GSQDVNDV--LTAIDHVIDMG--LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV 723 (789)
Q Consensus 648 ~~~~~~D~--~~~i~~l~~~~--~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~ 723 (789)
......+. .+++.++.++. ..|+++++|+|+|+||++++.++.++|++|+++++.+|...+.... +
T Consensus 249 ~~~~~~~~l~~el~~~i~~~~~~~~d~~~~~l~G~S~GG~~al~~a~~~p~~f~~~~~~sg~~~~~~~~---~------- 318 (403)
T 3c8d_A 249 CNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRG---G------- 318 (403)
T ss_dssp SCHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTTTTCTT---S-------
T ss_pred ChHHHHHHHHHHHHHHHHHHCCCCCCCCceEEEEECHHHHHHHHHHHhCchhhcEEEEeccccccCCCC---C-------
Confidence 11223332 24666766642 2588999999999999999999999999999999999986432110 0
Q ss_pred hhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 724 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
. +.....+.+.. . .......|++|+||+.|..+ ..++.+++++|+.
T Consensus 319 ----~---------~~~~~~~~~~~-~---~~~~~~~~i~l~~G~~D~~~-~~~~~~l~~~L~~ 364 (403)
T 3c8d_A 319 ----Q---------QEGVLLEKLKA-G---EVSAEGLRIVLEAGIREPMI-MRANQALYAQLHP 364 (403)
T ss_dssp ----S---------SCCHHHHHHHT-T---SSCCCSCEEEEEEESSCHHH-HHHHHHHHHHTGG
T ss_pred ----C---------cHHHHHHHHHh-c---cccCCCceEEEEeeCCCchh-HHHHHHHHHHHHh
Confidence 0 00011111211 1 12455678999999998654 6889999999874
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.7e-13 Score=148.13 Aligned_cols=183 Identities=15% Similarity=0.232 Sum_probs=120.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
..+...+|||||++||..+..+ ...+|+... .+.... .+..+ ....+..++|||||+.||..+.+....
T Consensus 86 ~~V~~vawSPdG~~LAs~s~dg-----~V~iwd~~~--~l~~l~--~~~~~-~~~sv~svafSPDG~~LAsgs~DGtVk- 154 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNNG-----NVSVFKDNK--MLTNLD--SKGNL-SSRTYHCFEWNPIESSIVVGNEDGELQ- 154 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETTS-----CEEEEETTE--EEEECC--CSSCS-TTTCEEEEEECSSSSCEEEEETTSEEE-
T ss_pred CcEEEEEECCCCCEEEEEeCCC-----cEEEEeCCc--eeeecc--CCCcc-ccccEEEEEEcCCCCEEEEEcCCCEEE-
Confidence 4588999999999999887764 456674322 222222 11110 111237899999999999998876543
Q ss_pred CCccCCCCCCC-------CCC----cCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceE----eccCCCCCCccc
Q 003886 234 PTFSLGSTKGG-------SSD----KDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ----AVKGIPKSLSVG 298 (789)
Q Consensus 234 ~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~----~l~~~~~~~~~~ 298 (789)
.|+...+... ... .++..|+....|+||. ..+...+..+++||+.+++.. .+. ......+.
T Consensus 155 -IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~-~~h~~~V~ 230 (588)
T 2j04_A 155 -FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ-NASRRKIT 230 (588)
T ss_dssp -EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE-CCCSSCCC
T ss_pred -EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec-ccccCcEE
Confidence 4443332210 111 3456788889999995 677777899999999988742 242 12335788
Q ss_pred eEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeec-CCCCCccCcc
Q 003886 299 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFP 377 (789)
Q Consensus 299 ~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-t~~~~~~~~p 377 (789)
.++|+ |+. |+.++. ..|.++|+ .++....+ ..+...+...
T Consensus 231 svaFs--g~~----LASa~~----------------~tIkLWd~-----------------~~~~~~~~~~gh~~~V~~v 271 (588)
T 2j04_A 231 DLKIV--DYK----VVLTCP----------------GYVHKIDL-----------------KNYSISSLKTGSLENFHII 271 (588)
T ss_dssp CEEEE--TTE----EEEECS----------------SEEEEEET-----------------TTTEEEEEECSCCSCCCEE
T ss_pred EEEEE--CCE----EEEEeC----------------CeEEEEEC-----------------CCCeEEEEEcCCCceEEEE
Confidence 99999 555 665541 26888887 55666333 3666778889
Q ss_pred ee--cCCCCEEEEEe
Q 003886 378 RF--SPDGKFLVFLS 390 (789)
Q Consensus 378 ~~--SpDG~~la~~s 390 (789)
.| ||||+.|+...
T Consensus 272 a~~~s~d~~~La~a~ 286 (588)
T 2j04_A 272 PLNHEKESTILLMSN 286 (588)
T ss_dssp EETTCSSCEEEEECS
T ss_pred EeeeCCCCCEEEEEc
Confidence 99 99998776544
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-10 Score=121.86 Aligned_cols=274 Identities=13% Similarity=0.055 Sum_probs=155.9
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
.++|||++++... ..+.+.++++.. +.....+.... ..+...+|||||++|+.....+ .+
T Consensus 30 ~~s~~~~~l~s~~---------~dg~i~iw~~~~-~~~~~~~~~h~-----~~v~~~~~~~~~~~l~s~~~d~-----~i 89 (312)
T 4ery_A 30 KFSPNGEWLASSS---------ADKLIKIWGAYD-GKFEKTISGHK-----LGISDVAWSSDSNLLVSASDDK-----TL 89 (312)
T ss_dssp EECTTSSEEEEEE---------TTSCEEEEETTT-CCEEEEECCCS-----SCEEEEEECTTSSEEEEEETTS-----EE
T ss_pred EECCCCCEEEEee---------CCCeEEEEeCCC-cccchhhccCC-----CceEEEEEcCCCCEEEEECCCC-----EE
Confidence 3578998776542 223455555422 22122232222 4578899999999999876654 56
Q ss_pred EEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceee
Q 003886 183 ELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (789)
Q Consensus 183 ~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (789)
.+|+ .++....+.. ..+.+ ..+.|+||++.|+..+.+.... .|+............+........|.
T Consensus 90 ~vwd~~~~~~~~~~~~---~~~~v------~~~~~~~~~~~l~s~~~d~~i~--iwd~~~~~~~~~~~~~~~~v~~~~~~ 158 (312)
T 4ery_A 90 KIWDVSSGKCLKTLKG---HSNYV------FCCNFNPQSNLIVSGSFDESVR--IWDVKTGKCLKTLPAHSDPVSAVHFN 158 (312)
T ss_dssp EEEETTTCCEEEEEEC---CSSCE------EEEEECSSSSEEEEEETTSCEE--EEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred EEEECCCCcEEEEEcC---CCCCE------EEEEEcCCCCEEEEEeCCCcEE--EEECCCCEEEEEecCCCCcEEEEEEc
Confidence 6773 3443333332 11222 6889999999998887665432 34332222222222233333445677
Q ss_pred CCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEE
Q 003886 261 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (789)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (789)
++....+++..+..|.+||+.+++............+..++|+|||+. |+..+ ....|.++
T Consensus 159 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~---------------~d~~i~iw 219 (312)
T 4ery_A 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY----ILAAT---------------LDNTLKLW 219 (312)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSE----EEEEE---------------TTTEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCE----EEEEc---------------CCCeEEEE
Confidence 775555566677899999999887543310222335677899999997 77655 22368888
Q ss_pred ecccccchhhhhhhhcCCCCCCC-eeecCCCCC--ccCcceec-CCCCEEEEEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 341 RVSLYKSEASELELKESSSEDLP-VVNLTESIS--SAFFPRFS-PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~--~~~~p~~S-pDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
|+ .+++ ...+..+.. ......++ ++|+.|+..+.+ ..|++||+.+++.
T Consensus 220 d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-----------g~i~vwd~~~~~~ 271 (312)
T 4ery_A 220 DY-----------------SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED-----------NLVYIWNLQTKEI 271 (312)
T ss_dssp ET-----------------TTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTT-----------SCEEEEETTTCCE
T ss_pred EC-----------------CCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCC-----------CEEEEEECCCchh
Confidence 87 3333 334443322 22334455 567766654433 3599999877543
Q ss_pred CCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEE-eCCeEEEEEE
Q 003886 417 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI-WGSSQVIISV 473 (789)
Q Consensus 417 ~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~-~~~~~~l~~~ 473 (789)
.....+.. ..+..+.|+|+++.++..+. .++...+|..
T Consensus 272 ~~~~~~h~-------------------~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 272 VQKLQGHT-------------------DVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp EEEECCCS-------------------SCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred hhhhhccC-------------------CcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 21111110 12345689999986644332 3566677754
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=4.8e-11 Score=131.01 Aligned_cols=274 Identities=11% Similarity=0.052 Sum_probs=164.3
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (789)
++|||+.++-. ...+.+.++++.+. .....+.... ..+...+|+|+|+.|+..+... .+.
T Consensus 116 ~~p~~~~l~s~---------s~Dg~i~vwd~~~~-~~~~~l~~h~-----~~V~~v~~~~~~~~l~sgs~D~-----~i~ 175 (410)
T 1vyh_C 116 FHPVFSVMVSA---------SEDATIKVWDYETG-DFERTLKGHT-----DSVQDISFDHSGKLLASCSADM-----TIK 175 (410)
T ss_dssp ECSSSSEEEEE---------ESSSCEEEEETTTC-CCCEEECCCS-----SCEEEEEECTTSSEEEEEETTS-----CCC
T ss_pred EcCCCCEEEEE---------eCCCeEEEEECCCC-cEEEEEeccC-----CcEEEEEEcCCCCEEEEEeCCC-----eEE
Confidence 45676655432 23456677776332 2222333222 4588899999999998776543 345
Q ss_pred Eec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeC
Q 003886 184 LWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 261 (789)
Q Consensus 184 i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (789)
+|+ +++..+ .+ .+..+.| ..+.|+|||+.|+..+.+.... .|+............+..+.....+.+
T Consensus 176 iwd~~~~~~~~--~~-~~h~~~V------~~v~~~p~~~~l~s~s~D~~i~--~wd~~~~~~~~~~~~h~~~v~~~~~~~ 244 (410)
T 1vyh_C 176 LWDFQGFECIR--TM-HGHDHNV------SSVSIMPNGDHIVSASRDKTIK--MWEVQTGYCVKTFTGHREWVRMVRPNQ 244 (410)
T ss_dssp EEETTSSCEEE--CC-CCCSSCE------EEEEECSSSSEEEEEETTSEEE--EEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred EEeCCCCceeE--EE-cCCCCCE------EEEEEeCCCCEEEEEeCCCeEE--EEECCCCcEEEEEeCCCccEEEEEECC
Confidence 553 233222 22 1222223 7899999999998887665432 344322222223334555555566777
Q ss_pred CcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCC----------------ccEEEEEeecCCceee
Q 003886 262 DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGL----------------HQYLVFVGWSSETRKL 325 (789)
Q Consensus 262 d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~----------------~~~l~f~~~~~~~~~~ 325 (789)
+.....++..+..|.+||+.+++..... ......+..+.|+|++... +..|+..+
T Consensus 245 ~g~~l~s~s~D~~v~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs-------- 315 (410)
T 1vyh_C 245 DGTLIASCSNDQTVRVWVVATKECKAEL-REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS-------- 315 (410)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE--------
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeeEe-cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe--------
Confidence 7544556667789999999988765431 2334467788999974210 00033333
Q ss_pred eeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC-CeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccc
Q 003886 326 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATD 404 (789)
Q Consensus 326 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~ 404 (789)
.+..|.++|+ .++ ....+..+...+....|+|+|++|+..+.+.
T Consensus 316 -------~D~~i~iwd~-----------------~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~----------- 360 (410)
T 1vyh_C 316 -------RDKTIKMWDV-----------------STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK----------- 360 (410)
T ss_dssp -------TTSEEEEEET-----------------TTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTT-----------
T ss_pred -------CCCeEEEEEC-----------------CCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCC-----------
Confidence 3346888898 333 4456666777788899999999988766442
Q ss_pred eeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003886 405 SLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (789)
Q Consensus 405 ~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (789)
.|.+||+.++......... ...+..+.|+|++..| +++..++...+|.
T Consensus 361 ~i~vwd~~~~~~~~~~~~h-------------------~~~v~~l~~~~~~~~l-~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 361 TLRVWDYKNKRCMKTLNAH-------------------EHFVTSLDFHKTAPYV-VTGSVDQTVKVWE 408 (410)
T ss_dssp EEEEECCTTSCCCEEEECC-------------------SSCEEEEEECSSSSCE-EEEETTSEEEEEC
T ss_pred eEEEEECCCCceEEEEcCC-------------------CCcEEEEEEcCCCCEE-EEEeCCCcEEEEe
Confidence 5999998765432111110 1124467899999854 6777778777774
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-10 Score=127.46 Aligned_cols=290 Identities=14% Similarity=0.115 Sum_probs=168.2
Q ss_pred cccEEEEeCCCCC-eEEEEecCCCCCCeEEEEe---cCCc------eeEEEecCCCcccccc-CCCcccceeecCCCCEE
Q 003886 154 TGASAVVPSPSGS-KLLVVRNPENESPIQFELW---SQSQ------LEKEFHVPQTVHGSVY-ADGWFEGISWNSDETLI 222 (789)
Q Consensus 154 ~~~~~~~~SPdG~-~la~~~~~~~~~~~~~~i~---~~~~------~~~~~~~~~~~~g~v~-~d~~~~~~~wSpDg~~l 222 (789)
+.+...+|||||+ +||.....+ .-.+|.+. ..++ ....+..+...|...- ..+.+..+.|||||+.|
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 123 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNS--VARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI 123 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBT--EEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred CceEEEEECCCCCcEEEEecCCc--eEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence 3578899999999 888776542 23344441 1222 1222222111110000 01123799999999999
Q ss_pred EEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCc------
Q 003886 223 AYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLS------ 296 (789)
Q Consensus 223 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~------ 296 (789)
+....+.... .|+ ...........+........|.++....++...+..|.+||+.+++..... ......
T Consensus 124 ~~~~~dg~i~--i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~ 199 (425)
T 1r5m_A 124 VTGVENGELR--LWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHF-ELKETGGSSINA 199 (425)
T ss_dssp EEEETTSCEE--EEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEE-CCC---------
T ss_pred EEEeCCCeEE--EEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEe-eccccCccceee
Confidence 9887665322 233 111111222233444445678887655666667789999999988765432 111111
Q ss_pred ---------cceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeec
Q 003886 297 ---------VGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL 367 (789)
Q Consensus 297 ---------~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L 367 (789)
+..+.|+|++. ++..+ ....|+++|+. .......+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~-----~~~~~---------------~~g~i~~~d~~----------------~~~~~~~~ 243 (425)
T 1r5m_A 200 ENHSGDGSLGVDVEWVDDDK-----FVIPG---------------PKGAIFVYQIT----------------EKTPTGKL 243 (425)
T ss_dssp ------CCCBSCCEEEETTE-----EEEEC---------------GGGCEEEEETT----------------CSSCSEEE
T ss_pred ccccCCcceeeEEEEcCCCE-----EEEEc---------------CCCeEEEEEcC----------------CCceeeee
Confidence 67889999854 44443 22368889982 22334456
Q ss_pred CCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCC
Q 003886 368 TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSIL 447 (789)
Q Consensus 368 t~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~ 447 (789)
..+...+...+|+|||+.|+..+.+. .|++||+.++......... ...+.
T Consensus 244 ~~~~~~i~~~~~~~~~~~l~~~~~d~-----------~i~i~d~~~~~~~~~~~~~-------------------~~~i~ 293 (425)
T 1r5m_A 244 IGHHGPISVLEFNDTNKLLLSASDDG-----------TLRIWHGGNGNSQNCFYGH-------------------SQSIV 293 (425)
T ss_dssp CCCSSCEEEEEEETTTTEEEEEETTS-----------CEEEECSSSBSCSEEECCC-------------------SSCEE
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCC-----------EEEEEECCCCccceEecCC-------------------CccEE
Confidence 56667788899999999888776443 5899998775432111100 01234
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC-CCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 448 SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~-~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
.+.|+||+ +++++..++ .|..+|+.+++....... ...+....++++++.|+....+ ..+.+.++...
T Consensus 294 ~~~~~~~~--~l~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~i~~~~~~ 362 (425)
T 1r5m_A 294 SASWVGDD--KVISCSMDG--SVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMD----GQVNVYDLKKL 362 (425)
T ss_dssp EEEEETTT--EEEEEETTS--EEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETT----SCEEEEECHHH
T ss_pred EEEECCCC--EEEEEeCCC--cEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECC----CeEEEEECCCC
Confidence 67899999 445555555 455668878876655443 3345556788988877655433 23777776543
|
| >2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38 PDB: 2gzr_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.4e-12 Score=132.00 Aligned_cols=183 Identities=14% Similarity=0.095 Sum_probs=108.3
Q ss_pred eecCC-CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHH-CCcEEEEEcCCCCCCC-----Cchhh
Q 003886 568 LTKGA-QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGF-----GEEAL 640 (789)
Q Consensus 568 ~~~~~-g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~-~Gy~V~~~d~rGs~G~-----G~~~~ 640 (789)
+.+.. |..+..++++|+++++.+++|+|+++||+... ........+.|++ .+..|+.+++++...+ +.++.
T Consensus 18 ~~S~~~~~~~~~~vylP~~y~~~~~yPvly~l~G~~~~--~~~~~~~~~~l~~~~~~ivV~v~~~~~~~~~~~~R~~d~~ 95 (278)
T 2gzs_A 18 FDSVDGTRHYRVWTAVPNTTAPASGYPILYMLDGNAVM--DRLDDELLKQLSEKTPPVIVAVGYQTNLPFDLNSRAYDYT 95 (278)
T ss_dssp EECTTSSCEEEEEEEEESSCCCTTCEEEEEESSHHHHH--HHCCHHHHHHHTTSCCCEEEEEEESSSSSCCHHHHHHHTC
T ss_pred EEcCCCCceEEEEEECCCCCCCCCCCCEEEEeeChhHH--HHHHHHHHHHhccCCCeEEEEEcCCCCCcCcccccccccC
Confidence 34443 67899999999988777889998777774321 1111123345554 6788888998753211 11121
Q ss_pred ccC--------C----CCCCcccHHHHHHH-----HHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeC
Q 003886 641 QSL--------P----GKVGSQDVNDVLTA-----IDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 703 (789)
Q Consensus 641 ~~~--------~----~~~~~~~~~D~~~~-----i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~ 703 (789)
... . ...+ ...+..+. +.++.++..+|++|++|+|+|+||+++++++.+ |++|+++++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~i~~~~~~~~~r~~i~G~S~GG~~a~~~~~~-p~~f~~~~~~s 172 (278)
T 2gzs_A 96 PAAESRKTDLHSGRFSRKSG--GSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSYFRSYYSAS 172 (278)
T ss_dssp CGGGGTTCSCC-----CCCC--CHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSSCSEEEEES
T ss_pred CCCccccccccccCcCCCcC--CHHHHHHHHHHHHHHHHHHhccCCCCceEEEEECHHHHHHHHHHhC-ccccCeEEEeC
Confidence 110 0 0011 12222222 233334444788899999999999999999999 99999999999
Q ss_pred CccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCC--------Ch
Q 003886 704 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRV--------PV 775 (789)
Q Consensus 704 pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~v--------p~ 775 (789)
|...+... ..........+ . ..-..|++|.||+.|..+ +.
T Consensus 173 ~~~~~~~~-----------------------------~~~~~~~~~~~--~-~~~~~~i~l~~G~~d~~~~~~~~~~~~~ 220 (278)
T 2gzs_A 173 PSLGRGYD-----------------------------ALLSRVTAVEP--L-QFCTKHLAIMEGSATQGDNRETHAVGVL 220 (278)
T ss_dssp GGGSTTHH-----------------------------HHHHHHHTSCT--T-TTTTCEEEEEECCC-----------CHH
T ss_pred cchhcCcc-----------------------------hHHHHHHHhhc--c-CCCCCcEEEEecCccccccccchhhhhH
Confidence 87532110 00000011110 0 112458999999999875 47
Q ss_pred HHHHHHHHHCCC
Q 003886 776 SNGLQVIYHIPF 787 (789)
Q Consensus 776 ~~~~~l~~~l~~ 787 (789)
.++.+++++|++
T Consensus 221 ~~~~~~~~~L~~ 232 (278)
T 2gzs_A 221 SKIHTTLTILKD 232 (278)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 899999988864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.29 E-value=7e-11 Score=141.64 Aligned_cols=264 Identities=10% Similarity=0.047 Sum_probs=163.3
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
+.+...+|||||++||+....+ ...+| ..++..+.+.. ..+.| ..+.|||||++|+..+.+...
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g-----~v~iwd~~~~~~~~~~~~---~~~~v------~~~~~s~~~~~l~~~~~dg~i 79 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSG-----RVEIWNYETQVEVRSIQV---TETPV------RAGKFIARKNWIIVGSDDFRI 79 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTS-----EEEEEETTTTEEEEEEEC---CSSCE------EEEEEEGGGTEEEEEETTSEE
T ss_pred CceEEEEECCCCCEEEEEeCCC-----EEEEEECCCCceEEEEec---CCCcE------EEEEEeCCCCEEEEEeCCCeE
Confidence 4588999999999999987543 46677 34444444332 12223 789999999999998775432
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCC-ceEeccCCCCCCccceEEEee-CCCCC
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG-EVQAVKGIPKSLSVGQVVWAP-LNEGL 309 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g-~~~~l~~~~~~~~~~~~~wSP-Dg~~~ 309 (789)
. .|+...+........+........|.++....+++..+..|.+||+.++ ...... ......+..++|+| |++.
T Consensus 80 ~--vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~- 155 (814)
T 3mkq_A 80 R--VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF-EGHEHFVMCVAFNPKDPST- 155 (814)
T ss_dssp E--EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEE-ECCSSCEEEEEEETTEEEE-
T ss_pred E--EEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEE-cCCCCcEEEEEEEcCCCCE-
Confidence 2 3433222222223334445556678888655666667789999999887 333321 23344678899999 7776
Q ss_pred ccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC-CCccCcceecC--CCCEE
Q 003886 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES-ISSAFFPRFSP--DGKFL 386 (789)
Q Consensus 310 ~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~-~~~~~~p~~Sp--DG~~l 386 (789)
|+..+ ....|+++|+. .......+..+ ...+....|+| ||+.|
T Consensus 156 ---l~~~~---------------~dg~v~vwd~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 201 (814)
T 3mkq_A 156 ---FASGC---------------LDRTVKVWSLG----------------QSTPNFTLTTGQERGVNYVDYYPLPDKPYM 201 (814)
T ss_dssp ---EEEEE---------------TTSEEEEEETT----------------CSSCSEEEECCCTTCCCEEEECCSTTCCEE
T ss_pred ---EEEEe---------------CCCeEEEEECC----------------CCcceeEEecCCCCCEEEEEEEECCCCCEE
Confidence 66555 23368888872 22233333333 36688899999 99988
Q ss_pred EEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCC
Q 003886 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (789)
Q Consensus 387 a~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (789)
+..+.+ ..|.+||+.++..... ... ....+..+.|+|||+.| +++..++
T Consensus 202 ~~~~~d-----------g~i~~~d~~~~~~~~~----------~~~---------~~~~v~~~~~~~~~~~l-~~~~~dg 250 (814)
T 3mkq_A 202 ITASDD-----------LTIKIWDYQTKSCVAT----------LEG---------HMSNVSFAVFHPTLPII-ISGSEDG 250 (814)
T ss_dssp EEECTT-----------SEEEEEETTTTEEEEE----------EEC---------CSSCEEEEEECSSSSEE-EEEETTS
T ss_pred EEEeCC-----------CEEEEEECCCCcEEEE----------EcC---------CCCCEEEEEEcCCCCEE-EEEeCCC
Confidence 776644 2599999876443111 000 00124467899999955 4555555
Q ss_pred eEEEEEEECCCCcEEEecCCC-CCceeEEeeecCCEE
Q 003886 467 SQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNI 502 (789)
Q Consensus 467 ~~~l~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg~~l 502 (789)
.. ..+|+.+++.......+ .......+++++..+
T Consensus 251 ~v--~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 285 (814)
T 3mkq_A 251 TL--KIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN 285 (814)
T ss_dssp CE--EEEETTTCSEEEEECCSSSSEEEEEECTTCGGG
T ss_pred eE--EEEECCCCcEEEEeecCCCcEEEEEEccCCCce
Confidence 44 44577787765544333 344455678887754
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.5e-10 Score=117.95 Aligned_cols=242 Identities=12% Similarity=0.134 Sum_probs=141.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
..+...+|||||++|+..+... .+.+|+ .++..+.+. +..+.| ..+.|+|+++.|+..+.+...
T Consensus 66 ~~v~~~~~s~dg~~l~s~s~D~-----~v~~wd~~~~~~~~~~~---~h~~~v------~~~~~~~~~~~l~s~s~D~~i 131 (319)
T 3frx_A 66 HIVQDCTLTADGAYALSASWDK-----TLRLWDVATGETYQRFV---GHKSDV------MSVDIDKKASMIISGSRDKTI 131 (319)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEE---CCSSCE------EEEEECTTSCEEEEEETTSCE
T ss_pred ccEEEEEECCCCCEEEEEeCCC-----EEEEEECCCCCeeEEEc---cCCCcE------EEEEEcCCCCEEEEEeCCCeE
Confidence 4578889999999999877654 567773 444433332 122223 789999999999988877644
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCc------ccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeC
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW------GETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 305 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~------g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPD 305 (789)
. .|+.. .........+..+.....|.+.. ...+++..+..|.+||+.+++..... ......+..++|+||
T Consensus 132 ~--vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~sp~ 207 (319)
T 3frx_A 132 K--VWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF-IGHNSNINTLTASPD 207 (319)
T ss_dssp E--EEETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE-CCCCSCEEEEEECTT
T ss_pred E--EEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee-cCCCCcEEEEEEcCC
Confidence 3 23321 11111112233333333444421 12344556788999999887755431 233446788999999
Q ss_pred CCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCccCcceecCCCC
Q 003886 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGK 384 (789)
Q Consensus 306 g~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~ 384 (789)
|+. |+..+ .+..|.++|+ .+++ ...+. ....+...+|||||+
T Consensus 208 g~~----l~s~~---------------~dg~i~iwd~-----------------~~~~~~~~~~-~~~~v~~~~~sp~~~ 250 (319)
T 3frx_A 208 GTL----IASAG---------------KDGEIMLWNL-----------------AAKKAMYTLS-AQDEVFSLAFSPNRY 250 (319)
T ss_dssp SSE----EEEEE---------------TTCEEEEEET-----------------TTTEEEEEEE-CCSCEEEEEECSSSS
T ss_pred CCE----EEEEe---------------CCCeEEEEEC-----------------CCCcEEEEec-CCCcEEEEEEcCCCC
Confidence 997 77665 2336888887 3443 33443 334578899999999
Q ss_pred EEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe
Q 003886 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 464 (789)
Q Consensus 385 ~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~ 464 (789)
.|+..... .+.+|+++++... ....... ..+.......+..++|+|||+.| +++..
T Consensus 251 ~la~~~~~------------~i~v~~~~~~~~~----------~~~~~~~-~~~~~~~~~~v~~~~~spdg~~l-~sg~~ 306 (319)
T 3frx_A 251 WLAAATAT------------GIKVFSLDPQYLV----------DDLRPEF-AGYSKAAEPHAVSLAWSADGQTL-FAGYT 306 (319)
T ss_dssp EEEEEETT------------EEEEEEETTEEEE----------EEECCCC-TTCCGGGCCCEEEEEECTTSSEE-EEEET
T ss_pred EEEEEcCC------------CcEEEEeCcCeee----------eccCccc-cccccCcCcceeEEEECCCCCEE-EEeec
Confidence 88765532 2677776553211 0000000 00000011123467899999966 56667
Q ss_pred CCeEEEEEEE
Q 003886 465 GSSQVIISVN 474 (789)
Q Consensus 465 ~~~~~l~~~d 474 (789)
++...||.+.
T Consensus 307 Dg~i~vWd~~ 316 (319)
T 3frx_A 307 DNVIRVWQVM 316 (319)
T ss_dssp TSCEEEEEEE
T ss_pred CceEEEEEEe
Confidence 7777787665
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.28 E-value=3.2e-10 Score=121.11 Aligned_cols=249 Identities=12% Similarity=0.079 Sum_probs=138.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
..+...+|||+|+.|+..+..+ ...+|+ .++..+.+.. ..+.| ..+.|||||+.|+..+.+...
T Consensus 77 ~~V~~~~~~~~~~~l~s~s~D~-----~v~lwd~~~~~~~~~~~~---h~~~v------~~v~~sp~~~~l~s~~~d~~i 142 (343)
T 2xzm_R 77 HFVSDLALSQENCFAISSSWDK-----TLRLWDLRTGTTYKRFVG---HQSEV------YSVAFSPDNRQILSAGAEREI 142 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETTS-----EEEEEETTSSCEEEEEEC---CCSCE------EEEEECSSTTEEEEEETTSCE
T ss_pred CceEEEEECCCCCEEEEEcCCC-----cEEEEECCCCcEEEEEcC---CCCcE------EEEEECCCCCEEEEEcCCCEE
Confidence 4578899999999998776554 567773 4444333321 12223 789999999999988766543
Q ss_pred CCCCccCCCCC--CCCCCcCCCCCCCcceeeCCcc----------cccCCccCceEEEEEccCCceEeccCCCCCCccce
Q 003886 232 SKPTFSLGSTK--GGSSDKDCNSWKGQGDWEEDWG----------ETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQ 299 (789)
Q Consensus 232 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~g----------~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~ 299 (789)
. .|+..... .......+..+.....|.++.. ...++..+..|.+||........+ ......+..
T Consensus 143 ~--~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~h~~~v~~ 218 (343)
T 2xzm_R 143 K--LWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTF--KAHESNVNH 218 (343)
T ss_dssp E--EEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEE--ECCSSCEEE
T ss_pred E--EEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEE--cCccccceE
Confidence 3 33321100 0011112333444445655531 223344567899999544333344 233446788
Q ss_pred EEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCccee
Q 003886 300 VVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRF 379 (789)
Q Consensus 300 ~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~ 379 (789)
++|+|||+. |+..+ .+..|.++|+. ..............+...+|
T Consensus 219 ~~~s~~g~~----l~sgs---------------~dg~v~iwd~~----------------~~~~~~~~~~~~~~v~~v~~ 263 (343)
T 2xzm_R 219 LSISPNGKY----IATGG---------------KDKKLLIWDIL----------------NLTYPQREFDAGSTINQIAF 263 (343)
T ss_dssp EEECTTSSE----EEEEE---------------TTCEEEEEESS----------------CCSSCSEEEECSSCEEEEEE
T ss_pred EEECCCCCE----EEEEc---------------CCCeEEEEECC----------------CCcccceeecCCCcEEEEEE
Confidence 999999997 77665 23367788862 11222111122334778999
Q ss_pred cCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEE
Q 003886 380 SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 459 (789)
Q Consensus 380 SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~ 459 (789)
||||+.|+... +. .+.+||+.++....+..-... .+... ....+ ....+..++|+|||+.|
T Consensus 264 sp~~~~la~~~-d~-----------~v~iw~~~~~~~~~~~~~~~~--~~~~~---~~~~~-~~~~v~~~~~sp~g~~l- 324 (343)
T 2xzm_R 264 NPKLQWVAVGT-DQ-----------GVKIFNLMTQSKAPVCTIEAE--PITKA---EGQKG-KNPQCTSLAWNALGKKL- 324 (343)
T ss_dssp CSSSCEEEEEE-SS-----------CEEEEESSSCCSCSEEECCCC--SGGGB---TTBCC-SCCCEEEEEECSSSCCE-
T ss_pred CCCCCEEEEEC-CC-----------CEEEEEeCCCCCCceEEeecC--cchhh---hhhcC-CCCceEEEEECCCCCeE-
Confidence 99998776433 21 388899877544221000000 00000 00000 01123467899999865
Q ss_pred EEEEeCCeEEEEEEE
Q 003886 460 LSSIWGSSQVIISVN 474 (789)
Q Consensus 460 ~~~~~~~~~~l~~~d 474 (789)
+++..++...+|.++
T Consensus 325 ~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 325 FAGFTDGVIRTFSFE 339 (343)
T ss_dssp EEEETTSEEEEEEEE
T ss_pred EEecCCceEEEEEEE
Confidence 566677777777654
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.9e-11 Score=130.57 Aligned_cols=292 Identities=15% Similarity=0.147 Sum_probs=163.3
Q ss_pred ccEEEEeCCCCCeEEEEecCCC------CCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEe
Q 003886 155 GASAVVPSPSGSKLLVVRNPEN------ESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 226 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~------~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~ 226 (789)
.+...+|||||+.++++....+ .....+.+| ..++..+.... ....+ .+..+.|||||+.|+...
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~------~v~~~~~s~~~~~l~~~~ 86 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDS------KFNDLDWSHNNKIIAGAL 86 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSS------CEEEEEECSSSSCEEEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCC------ceEEEEECCCCCeEEEEc
Confidence 3667899999995555542211 111234455 22221111111 01112 237999999999999887
Q ss_pred ecCCCCCCCccCCC----CCCCCCCcCCCCCCCcceeeCCc-ccccCCccCceEEEEEccCCc------eEe-ccC-CCC
Q 003886 227 EEPSPSKPTFSLGS----TKGGSSDKDCNSWKGQGDWEEDW-GETYAGKRQPSLFVININSGE------VQA-VKG-IPK 293 (789)
Q Consensus 227 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~d~-g~~~~~~~~~~l~v~d~~~g~------~~~-l~~-~~~ 293 (789)
.+.... .|+... .........+........|.++. ...+++..+..|.+||+.+++ ... +.. ...
T Consensus 87 ~dg~v~--vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 164 (416)
T 2pm9_A 87 DNGSLE--LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS 164 (416)
T ss_dssp SSSCEE--EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred cCCeEE--EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC
Confidence 765432 333222 11112233445555667788873 344455567889999998876 221 100 122
Q ss_pred CCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCC--
Q 003886 294 SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTES-- 370 (789)
Q Consensus 294 ~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~-- 370 (789)
...+..++|+||+.. +++++. ....|.++|+ .+++ ...+...
T Consensus 165 ~~~v~~~~~~~~~~~----~l~~~~--------------~dg~v~iwd~-----------------~~~~~~~~~~~~~~ 209 (416)
T 2pm9_A 165 VDEVISLAWNQSLAH----VFASAG--------------SSNFASIWDL-----------------KAKKEVIHLSYTSP 209 (416)
T ss_dssp SCCCCEEEECSSCTT----EEEEES--------------SSSCEEEEET-----------------TTTEEEEEECCCCC
T ss_pred CCCeeEEEeCCCCCc----EEEEEc--------------CCCCEEEEEC-----------------CCCCcceEEecccc
Confidence 346779999999666 666652 2236888887 3333 3344433
Q ss_pred ----CCccCcceecCCCCE-EEEEecCCCCCCCCccccceeEEeecCCCCCC-Cccc-ceeeEEeeeeccCCCCCccccc
Q 003886 371 ----ISSAFFPRFSPDGKF-LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF-SSLE-KIVDVIPVVQCAEGDCFPGLYS 443 (789)
Q Consensus 371 ----~~~~~~p~~SpDG~~-la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~-~~t~-~~~~v~~~~~~~~~~~f~g~~~ 443 (789)
...+...+|+|||+. |+..+.+. ....|++||+.++... .... .. .
T Consensus 210 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~--------~~~~i~~~d~~~~~~~~~~~~~~~-------------------~ 262 (416)
T 2pm9_A 210 NSGIKQQLSVVEWHPKNSTRVATATGSD--------NDPSILIWDLRNANTPLQTLNQGH-------------------Q 262 (416)
T ss_dssp SSCCCCCEEEEEECSSCTTEEEEEECCS--------SSCCCCEEETTSTTSCSBCCCSCC-------------------S
T ss_pred ccccCCceEEEEECCCCCCEEEEEECCC--------CCceEEEEeCCCCCCCcEEeecCc-------------------c
Confidence 456788999999854 44444331 1126899998875321 1111 11 0
Q ss_pred cCCCCCcccc-CCCEEEEEEEeCCeEEEEEEECCCCcEEEecC-CCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 444 SSILSNPWLS-DGCTMLLSSIWGSSQVIISVNVSSGELLRITP-AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 444 ~~~~~~~ws~-Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~-~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
..+..+.|+| |++. ++++..++. |..+|+.+++...... ....+....|++++..++++.+... .+.+.++.
T Consensus 263 ~~v~~~~~s~~~~~~-l~s~~~dg~--v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~---~i~iw~~~ 336 (416)
T 2pm9_A 263 KGILSLDWCHQDEHL-LLSSGRDNT--VLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN---KIEVQTLQ 336 (416)
T ss_dssp SCEEEEEECSSCSSC-EEEEESSSE--EEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSS---EEEEEESC
T ss_pred CceeEEEeCCCCCCe-EEEEeCCCC--EEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCC---cEEEEEcc
Confidence 1244678999 7764 455555555 4555777776654433 3334455688999855555555443 36666665
Q ss_pred cc
Q 003886 522 DK 523 (789)
Q Consensus 522 ~~ 523 (789)
..
T Consensus 337 ~~ 338 (416)
T 2pm9_A 337 NL 338 (416)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-10 Score=122.80 Aligned_cols=228 Identities=11% Similarity=0.018 Sum_probs=136.9
Q ss_pred eEEEEe-cCCceeEEEecCC---CccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCC
Q 003886 180 IQFELW-SQSQLEKEFHVPQ---TVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 255 (789)
Q Consensus 180 ~~~~i~-~~~~~~~~~~~~~---~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (789)
.+..++ .+++..+.+.... .. ..++|||||++|++....
T Consensus 12 ~v~~~d~~~~~~~~~~~~~~~~~~~----------~~~~~s~dg~~l~v~~~~--------------------------- 54 (337)
T 1pby_B 12 KLVVIDTEKMAVDKVITIADAGPTP----------MVPMVAPGGRIAYATVNK--------------------------- 54 (337)
T ss_dssp EEEEEETTTTEEEEEEECTTCTTCC----------CCEEECTTSSEEEEEETT---------------------------
T ss_pred eEEEEECCCCcEEEEEEcCCCCCCc----------cceEEcCCCCEEEEEeCC---------------------------
Confidence 455555 4566665555443 23 689999999988776432
Q ss_pred cceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC----CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeec
Q 003886 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS----LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCY 331 (789)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~----~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~ 331 (789)
...|++||+.+++.......... ..+..++|+|||+. |++........+... .
T Consensus 55 ----------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~----l~~~~~~~~~~~~~~---~ 111 (337)
T 1pby_B 55 ----------------SESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKT----LAIYESPVRLELTHF---E 111 (337)
T ss_dssp ----------------TTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSE----EEEEEEEEEECSSCE---E
T ss_pred ----------------CCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCE----EEEEecccccccccc---c
Confidence 25799999998886543111111 14668999999997 776642100000000 0
Q ss_pred cCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeec
Q 003886 332 NRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 411 (789)
Q Consensus 332 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~ 411 (789)
.....|+++|+ .+++.............+.|||||++|++.+ ..|+++|+
T Consensus 112 ~~~~~i~v~d~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-------------~~i~~~d~ 161 (337)
T 1pby_B 112 VQPTRVALYDA-----------------ETLSRRKAFEAPRQITMLAWARDGSKLYGLG-------------RDLHVMDP 161 (337)
T ss_dssp ECCCEEEEEET-----------------TTTEEEEEEECCSSCCCEEECTTSSCEEEES-------------SSEEEEET
T ss_pred ccCceEEEEEC-----------------CCCcEEEEEeCCCCcceeEECCCCCEEEEeC-------------CeEEEEEC
Confidence 02347999998 4554433222234467789999999987762 14999998
Q ss_pred CCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeE---------------------EE
Q 003886 412 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ---------------------VI 470 (789)
Q Consensus 412 ~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~---------------------~l 470 (789)
.+++... ... .. . ......|+|||+.+++.....+.. .|
T Consensus 162 ~~~~~~~-------~~~---~~---~-------~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 221 (337)
T 1pby_B 162 EAGTLVE-------DKP---IQ---S-------WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221 (337)
T ss_dssp TTTEEEE-------EEC---ST---T-------TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred CCCcEee-------eee---cc---c-------cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence 7754321 011 00 0 012347899998776554333222 68
Q ss_pred EEEECCCCcEEEecCC--CCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 471 ISVNVSSGELLRITPA--ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 471 ~~~dl~tg~~~~lt~~--~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
+.+|+.+++...+... ........+++||+.+++. . ..|+++++.++
T Consensus 222 ~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~-----~~v~~~d~~~~ 270 (337)
T 1pby_B 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-Y-----NVLESFDLEKN 270 (337)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-E-----SEEEEEETTTT
T ss_pred EEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-C-----CeEEEEECCCC
Confidence 8999999987644322 1223346889999987766 1 46888886543
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.3e-10 Score=119.67 Aligned_cols=268 Identities=12% Similarity=0.115 Sum_probs=156.2
Q ss_pred cccEEEEeCCCC-CeEEEEecCCCCCCeEEEEec---CC-ceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeec
Q 003886 154 TGASAVVPSPSG-SKLLVVRNPENESPIQFELWS---QS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (789)
Q Consensus 154 ~~~~~~~~SPdG-~~la~~~~~~~~~~~~~~i~~---~~-~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~ 228 (789)
+.+...+|||++ +.|+..+..+ ...+|+ .. ........-.+..+.| ..+.|+|||++|+..+.+
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s~D~-----~v~~W~~~~~~~~~~~~~~~~~~h~~~v------~~~~~s~dg~~l~s~s~D 86 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSASRDK-----TLISWKLTGDDQKFGVPVRSFKGHSHIV------QDCTLTADGAYALSASWD 86 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEETTS-----EEEEEEEEEETTEEEEEEEEEECCSSCE------EEEEECTTSSEEEEEETT
T ss_pred ceEEEEEccCCCccEEEEecCCc-----cEEEecCCCCCccccccceEEeCCcccE------EEEEECCCCCEEEEEeCC
Confidence 457889999977 5666555443 445552 11 1111111111222233 789999999999988876
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC-
Q 003886 229 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE- 307 (789)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~- 307 (789)
...+ .|+............+........|.++....+++..+..|.+||+.+.....+ ......+..+.|+|+++
T Consensus 87 ~~v~--~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~--~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 87 KTLR--LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATL--LGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp SEEE--EEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEE--CCCSSCEEEEEECCC---
T ss_pred CEEE--EEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE--eccCCcEEEEEEccCCCC
Confidence 6433 344322222222233444444556777755556666788999999987777666 33444677889998543
Q ss_pred -----CCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC-CeeecCCCCCccCcceecC
Q 003886 308 -----GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSP 381 (789)
Q Consensus 308 -----~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~Sp 381 (789)
. |+..+ .+..|.++|+ .+. ....+..+...+...+|||
T Consensus 163 ~~~~~~----l~s~~---------------~d~~i~~wd~-----------------~~~~~~~~~~~h~~~v~~~~~sp 206 (319)
T 3frx_A 163 DDDSVT----IISAG---------------NDKMVKAWNL-----------------NQFQIEADFIGHNSNINTLTASP 206 (319)
T ss_dssp ---CCE----EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECCCCSCEEEEEECT
T ss_pred CCCccE----EEEEe---------------CCCEEEEEEC-----------------CcchhheeecCCCCcEEEEEEcC
Confidence 3 44333 2336888887 333 3445666777788999999
Q ss_pred CCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEE
Q 003886 382 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 461 (789)
Q Consensus 382 DG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~ 461 (789)
||++|+..+.+. .|.+||+.++...... ... ..+..+.|+||+..|+..
T Consensus 207 ~g~~l~s~~~dg-----------~i~iwd~~~~~~~~~~----------~~~----------~~v~~~~~sp~~~~la~~ 255 (319)
T 3frx_A 207 DGTLIASAGKDG-----------EIMLWNLAAKKAMYTL----------SAQ----------DEVFSLAFSPNRYWLAAA 255 (319)
T ss_dssp TSSEEEEEETTC-----------EEEEEETTTTEEEEEE----------ECC----------SCEEEEEECSSSSEEEEE
T ss_pred CCCEEEEEeCCC-----------eEEEEECCCCcEEEEe----------cCC----------CcEEEEEEcCCCCEEEEE
Confidence 999998777543 5999998775432110 000 123467899999866543
Q ss_pred EEeCCeEEEEEEECCCCcEEE-ecCC--------CCCceeEEeeecCCEEEEEEe
Q 003886 462 SIWGSSQVIISVNVSSGELLR-ITPA--------ESNFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 462 ~~~~~~~~l~~~dl~tg~~~~-lt~~--------~~~~~~~~~s~dg~~l~~~~s 507 (789)
. .....+| +++++.... +... ........|++||+.|+....
T Consensus 256 -~-~~~i~v~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~ 306 (319)
T 3frx_A 256 -T-ATGIKVF--SLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306 (319)
T ss_dssp -E-TTEEEEE--EETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEET
T ss_pred -c-CCCcEEE--EeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeec
Confidence 3 3334455 444444332 2211 112234578999998765543
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-10 Score=125.89 Aligned_cols=267 Identities=9% Similarity=0.063 Sum_probs=143.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCce---------eEEEecCCCccc------cccCCCcccceeec
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQL---------EKEFHVPQTVHG------SVYADGWFEGISWN 216 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~---------~~~~~~~~~~~g------~v~~d~~~~~~~wS 216 (789)
..+...+|||||++||.....+ .+.+|+ .++. .....+. +... .+-.++.+..+.|+
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg-----~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~l~~~ 102 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGG-----RVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWL 102 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTS-----EEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCCCCEEEEC
T ss_pred CcEEEEEECCCCCEEEEEcCCC-----eEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCceEEEEEc
Confidence 4588999999999999876543 455562 2220 0111111 1110 00000223789999
Q ss_pred CCC--CEEEEEeecCCCCCCCccCCCCC-----------CC-----------------------------CCCcCCCCCC
Q 003886 217 SDE--TLIAYVAEEPSPSKPTFSLGSTK-----------GG-----------------------------SSDKDCNSWK 254 (789)
Q Consensus 217 pDg--~~la~~~~~~~~~~~~~~~~~~~-----------~~-----------------------------~~~~~~~~~~ 254 (789)
|++ ..|+..+.+.... .|+..... .+ .....+....
T Consensus 103 ~~~~~~~l~s~s~d~~i~--iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 103 PQKNAAQFLLSTNDKTIK--LWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp CCCSSSEEEEEECSSCEE--EEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred CCCCcceEEEeCCCCeEE--EEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence 998 7788777665432 22211000 00 0012344445
Q ss_pred CcceeeCCcccccCCccCceEEEEEccC-CceEecc---C---CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeee
Q 003886 255 GQGDWEEDWGETYAGKRQPSLFVININS-GEVQAVK---G---IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGI 327 (789)
Q Consensus 255 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~-g~~~~l~---~---~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~ 327 (789)
....|.++.....++ .+..|.+||+.+ ++...+. . ......+..++|+|||.. +++++.
T Consensus 181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~----~l~s~~--------- 246 (447)
T 3dw8_B 181 NSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCN----TFVYSS--------- 246 (447)
T ss_dssp CEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTT----EEEEEE---------
T ss_pred EEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCc----EEEEEe---------
Confidence 566788875444455 688999999983 4333210 0 122335778999999944 444442
Q ss_pred eeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-----eeecCCCCC------------ccCcceecCCCCEEEEEe
Q 003886 328 KYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-----VVNLTESIS------------SAFFPRFSPDGKFLVFLS 390 (789)
Q Consensus 328 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~Lt~~~~------------~~~~p~~SpDG~~la~~s 390 (789)
.+..|.++|+ .++. ...+..+.. .+...+|||||++|+..+
T Consensus 247 -----~dg~i~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 304 (447)
T 3dw8_B 247 -----SKGTIRLCDM-----------------RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD 304 (447)
T ss_dssp -----TTSCEEEEET-----------------TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE
T ss_pred -----CCCeEEEEEC-----------------cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee
Confidence 2236888887 3332 345554443 688899999999988665
Q ss_pred cCCCCCCCCccccceeEEeecCC-CCCCCcccceeeEEeee-eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeE
Q 003886 391 AKSSVDSGAHSATDSLHRIDWPT-NGNFSSLEKIVDVIPVV-QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 468 (789)
Q Consensus 391 ~~~~~~~g~~~~~~~L~~~d~~~-~~~~~~t~~~~~v~~~~-~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 468 (789)
. ..|.+||+.. +...........+..-. ......+ ......+.|+|||+.| +++..++.
T Consensus 305 ~------------~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----i~~~~~~~~s~~~~~l-~s~s~dg~- 365 (447)
T 3dw8_B 305 Y------------LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC-----IFDKFECCWNGSDSVV-MTGSYNNF- 365 (447)
T ss_dssp S------------SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG-----GGCCCCEEECTTSSEE-EEECSTTE-
T ss_pred C------------CeEEEEeCCCCccccceeeccccccccccccccccc-----cccceEEEECCCCCEE-EEeccCCE-
Confidence 3 3599999876 33221111110000000 0000000 0012247899999976 55555554
Q ss_pred EEEEEECCCCcEEEec
Q 003886 469 VIISVNVSSGELLRIT 484 (789)
Q Consensus 469 ~l~~~dl~tg~~~~lt 484 (789)
|+.+|+.+++...+.
T Consensus 366 -v~iwd~~~~~~~~~~ 380 (447)
T 3dw8_B 366 -FRMFDRNTKRDITLE 380 (447)
T ss_dssp -EEEEETTTCCEEEEE
T ss_pred -EEEEEcCCCcceeee
Confidence 555688888876543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.8e-10 Score=122.14 Aligned_cols=270 Identities=12% Similarity=0.043 Sum_probs=152.9
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
.++|||++++-. ...+.+.+++.... .....++... ..+...+|||||+.||.....+ ..
T Consensus 71 ~~s~d~~~l~s~---------s~Dg~v~vWd~~~~-~~~~~~~~~~-----~~v~~~~~sp~g~~lasg~~d~-----~i 130 (354)
T 2pbi_B 71 DWCKDKRRIVSS---------SQDGKVIVWDSFTT-NKEHAVTMPC-----TWVMACAYAPSGCAIACGGLDN-----KC 130 (354)
T ss_dssp EECTTSSEEEEE---------ETTSEEEEEETTTC-CEEEEEECSS-----SCCCEEEECTTSSEEEEESTTS-----EE
T ss_pred EECCCCCEEEEE---------eCCCeEEEEECCCC-CcceEEecCC-----CCEEEEEECCCCCEEEEeeCCC-----CE
Confidence 346788766432 23446666664222 2122222222 3477899999999998765443 34
Q ss_pred EEec---C---C--ceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCC
Q 003886 183 ELWS---Q---S--QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK 254 (789)
Q Consensus 183 ~i~~---~---~--~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (789)
.+|. . + .....+.. ..+. +..++|+||++.|+..+.+.... .|+............+....
T Consensus 131 ~v~~~~~~~~~~~~~~~~~~~~---h~~~------v~~~~~~~~~~~l~t~s~D~~v~--lwd~~~~~~~~~~~~h~~~v 199 (354)
T 2pbi_B 131 SVYPLTFDKNENMAAKKKSVAM---HTNY------LSACSFTNSDMQILTASGDGTCA--LWDVESGQLLQSFHGHGADV 199 (354)
T ss_dssp EEEECCCCTTCCSGGGCEEEEE---CSSC------EEEEEECSSSSEEEEEETTSEEE--EEETTTCCEEEEEECCSSCE
T ss_pred EEEEEeccccccccccceeeec---cCCc------EEEEEEeCCCCEEEEEeCCCcEE--EEeCCCCeEEEEEcCCCCCe
Confidence 4441 1 0 11111111 1122 27899999999999887765432 34332222211222222222
Q ss_pred CcceeeC--CcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeecc
Q 003886 255 GQGDWEE--DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYN 332 (789)
Q Consensus 255 ~~~~~~~--d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~ 332 (789)
....+.+ +....+++..+..|.+||+.+++..... ......+..++|+|||+. |+..+.
T Consensus 200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~-~~h~~~v~~v~~~p~~~~----l~s~s~-------------- 260 (354)
T 2pbi_B 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF-ETHESDVNSVRYYPSGDA----FASGSD-------------- 260 (354)
T ss_dssp EEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSE----EEEEET--------------
T ss_pred EEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCCeEEEEEeCCCCE----EEEEeC--------------
Confidence 2233433 2223445556789999999988765441 233446789999999987 666552
Q ss_pred CCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCC--CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEe
Q 003886 333 RPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 409 (789)
Q Consensus 333 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~--~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~ 409 (789)
+..|.++|+ ..+. ...+... ........|||||+.|+..+.+. .|.+|
T Consensus 261 -D~~v~lwd~-----------------~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~-----------~i~vw 311 (354)
T 2pbi_B 261 -DATCRLYDL-----------------RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDY-----------TINVW 311 (354)
T ss_dssp -TSCEEEEET-----------------TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTS-----------CEEEE
T ss_pred -CCeEEEEEC-----------------CCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCC-----------cEEEE
Confidence 236778887 3332 2223222 22456789999999887766443 59999
Q ss_pred ecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 410 DWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 410 d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
|+.++.......+ +...+..+.|+|||+.| +++..++...||
T Consensus 312 d~~~~~~~~~l~~-------------------h~~~v~~l~~spdg~~l-~sgs~D~~v~vW 353 (354)
T 2pbi_B 312 DVLKGSRVSILFG-------------------HENRVSTLRVSPDGTAF-CSGSWDHTLRVW 353 (354)
T ss_dssp ETTTCSEEEEECC-------------------CSSCEEEEEECTTSSCE-EEEETTSEEEEE
T ss_pred ECCCCceEEEEEC-------------------CCCcEEEEEECCCCCEE-EEEcCCCCEEec
Confidence 9876543211101 01134567899999855 566777777776
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-10 Score=127.32 Aligned_cols=280 Identities=14% Similarity=0.113 Sum_probs=160.0
Q ss_pred cccEEEEeCCC-CCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecC-CCCEEEEEeecC
Q 003886 154 TGASAVVPSPS-GSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNS-DETLIAYVAEEP 229 (789)
Q Consensus 154 ~~~~~~~~SPd-G~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSp-Dg~~la~~~~~~ 229 (789)
..+...+|||+ ++.||..+..+ .+.+|+ .++....... .+..+.| ..+.|+| |++.|+..+.+.
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~-~gH~~~V------~~l~f~p~~~~~l~s~s~D~ 187 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKG-IGAGGSI------TGLKFNPLNTNQFYASSMEG 187 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTS-----CEEEECSSCCSCCEEECC-CSSSCCC------CEEEECSSCTTEEEEECSSS
T ss_pred CCEEEEEEeCCCCCEEEEEeCCC-----EEEEEECCCCCceeEEEc-cCCCCCE------EEEEEeCCCCCEEEEEeCCC
Confidence 34889999995 56677665443 466773 3333333332 2333444 8999998 788888777765
Q ss_pred CCCCCCccCCCCCC--CCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003886 230 SPSKPTFSLGSTKG--GSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (789)
Q Consensus 230 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (789)
... .|+...... .........+.....|.++....+++..+..|.+||+.+..+..+. .....+..++|+|+++
T Consensus 188 ~v~--iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~--~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 188 TTR--LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLR--MHKKKVTHVALNPCCD 263 (435)
T ss_dssp CEE--EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSB--CCSSCEEEEEECTTCS
T ss_pred EEE--EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEe--cccceEEeeeecCCCc
Confidence 433 333211100 0011112233445567777655556667789999999877666552 3344678899999999
Q ss_pred CCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEE
Q 003886 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 308 ~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la 387 (789)
. ++.++.. +..|.++|+.... ..........+...+...+|||||++|+
T Consensus 264 ~----~~~s~s~--------------d~~v~iwd~~~~~-------------~~~~~~~~~~h~~~v~~~~~spdg~~l~ 312 (435)
T 4e54_B 264 W----FLATASV--------------DQTVKIWDLRQVR-------------GKASFLYSLPHRHPVNAACFSPDGARLL 312 (435)
T ss_dssp S----EEEEEET--------------TSBCCEEETTTCC-------------SSSCCSBCCBCSSCEEECCBCTTSSEEE
T ss_pred e----EEEEecC--------------cceeeEEeccccc-------------ccceEEEeeeccccccceeECCCCCeeE
Confidence 8 7766632 2356677762100 1111222234455678899999999998
Q ss_pred EEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCC-
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS- 466 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~- 466 (789)
..+.+. .|.+||+.++........ .... .+. + .......|++++..+++....++
T Consensus 313 s~~~D~-----------~i~iwd~~~~~~~~~~~~---------~~~~-~~~--~-~~~~~~~~~~~~~~~~~~~~~d~~ 368 (435)
T 4e54_B 313 TTDQKS-----------EIRVYSASQWDCPLGLIP---------HPHR-HFQ--H-LTPIKAAWHPRYNLIVVGRYPDPN 368 (435)
T ss_dssp EEESSS-----------CEEEEESSSSSSEEEECC---------CCCC-CCS--S-SCCCBCEECSSSSCEEEECCCCTT
T ss_pred EEcCCC-----------EEEEEECCCCccceEEec---------cccc-ccc--c-ceeEEEEEcCCCCEEEEEEcCCCC
Confidence 777543 589999877543211000 0000 000 0 01234567888776655433221
Q ss_pred --------eEEEEEEECCCCcEEEecC-CCC--CceeEEeeecCCEEEE
Q 003886 467 --------SQVIISVNVSSGELLRITP-AES--NFSWSLLTLDGDNIIA 504 (789)
Q Consensus 467 --------~~~l~~~dl~tg~~~~lt~-~~~--~~~~~~~s~dg~~l~~ 504 (789)
...|..+|..+|+...... .+. ..+...|+++|..|+.
T Consensus 369 ~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~las 417 (435)
T 4e54_B 369 FKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLAS 417 (435)
T ss_dssp SCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEE
T ss_pred eEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEE
Confidence 2346677888888765433 222 2233468899887653
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-10 Score=123.17 Aligned_cols=255 Identities=13% Similarity=0.033 Sum_probs=130.4
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeE-EEEec-------C-
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKL-LVVRN-------P- 174 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~l-a~~~~-------~- 174 (789)
.+|||++++ +.+. . .+..+++..+ ++..++...+.. +....++|||||++| +++.+ .
T Consensus 47 ~spdg~~l~-~~~~-------~--~v~~~~~~~~-g~~~~~~~~~~~---g~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 112 (365)
T 1jof_A 47 FDHERKNIY-GAAM-------K--KWSSFAVKSP-TEIVHEASHPIG---GHPRANDADTNTRAIFLLAAKQPPYAVYAN 112 (365)
T ss_dssp ECTTSSEEE-EEEB-------T--EEEEEEEEET-TEEEEEEEEECC---SSGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred ECCCCCEEE-EEcc-------c--eEEEEEECCC-CCEEEeeEeecC---CCCccEEECCCCCEEEEEEecCCcceeccc
Confidence 469998774 3322 1 4556665322 222222211100 123347899999974 45543 1
Q ss_pred ----CCCCCeEEEEecCCceeEEEec-CCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcC
Q 003886 175 ----ENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKD 249 (789)
Q Consensus 175 ----~~~~~~~~~i~~~~~~~~~~~~-~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (789)
.++.-.+|.+..+++..+.+.. ...... ...++.|||||++|+.. ..
T Consensus 113 ~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~spdG~~l~~~-~~--------------------- 164 (365)
T 1jof_A 113 PFYKFAGYGNVFSVSETGKLEKNVQNYEYQENT------GIHGMVFDPTETYLYSA-DL--------------------- 164 (365)
T ss_dssp EESSSCCEEEEEEECTTCCEEEEEEEEECCTTC------CEEEEEECTTSSEEEEE-ET---------------------
T ss_pred eeecCCceEEEEccCCCCcCcceEeeEEeCCCC------cceEEEECCCCCEEEEE-cC---------------------
Confidence 2233334444434555443332 100000 12689999999987553 21
Q ss_pred CCCCCCcceeeCCcccccCCccCceEEEEEcc-CCceEeccC--CCC-CCccceEEEeeCCCCCccEEEEEeecCCceee
Q 003886 250 CNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEVQAVKG--IPK-SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 325 (789)
Q Consensus 250 ~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~g~~~~l~~--~~~-~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~ 325 (789)
....|++||++ +|+.+.+.. .+. ...+..++|||||+. |++.. +.+
T Consensus 165 ---------------------~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~----l~v~~-~~~---- 214 (365)
T 1jof_A 165 ---------------------TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNY----LYALM-EAG---- 214 (365)
T ss_dssp ---------------------TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSE----EEEEE-TTT----
T ss_pred ---------------------CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCE----EEEEE-CCC----
Confidence 22578999998 787654311 121 345678899999997 65554 211
Q ss_pred eeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCee-------ecCCC-CC---------ccCcce-ecCCCCEEE
Q 003886 326 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-------NLTES-IS---------SAFFPR-FSPDGKFLV 387 (789)
Q Consensus 326 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------~Lt~~-~~---------~~~~p~-~SpDG~~la 387 (789)
....+|.++. ++++.. .+..+ .+ ....++ |||||++|+
T Consensus 215 -------~~v~v~~~~~-----------------~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 215 -------NRICEYVIDP-----------------ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp -------TEEEEEEECT-----------------TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred -------CeEEEEEEeC-----------------CCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 1113444443 233321 12111 11 355688 999999885
Q ss_pred EEecCCCCCCCCccccceeEEeecC-CCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCcccc---CCCEEEEEEE
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWP-TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS---DGCTMLLSSI 463 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~-~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~---Dg~~l~~~~~ 463 (789)
++++.. . ......|.+|++. ++.... +....... . .....+.|+| ||++|++...
T Consensus 271 -v~~~~~---~-~~~~~~i~v~~~~~~g~~~~-------~~~~~~~~--~-------~~~~~~a~sp~~~dg~~l~v~~~ 329 (365)
T 1jof_A 271 -ASSRAN---K-FELQGYIAGFKLRDCGSIEK-------QLFLSPTP--T-------SGGHSNAVSPCPWSDEWMAITDD 329 (365)
T ss_dssp -EEEEES---S-TTSCCEEEEEEECTTSCEEE-------EEEEEECS--S-------CCTTCCCEEECTTCTTEEEEECS
T ss_pred -EECCCC---C-CCCCCeEEEEEECCCCCEEE-------eeeeeecC--C-------CCcccceecCCCcCCCEEEEEEc
Confidence 443321 0 0011268888875 322211 00001000 0 1234678899 8998876655
Q ss_pred eCCeEEEEEEEC
Q 003886 464 WGSSQVIISVNV 475 (789)
Q Consensus 464 ~~~~~~l~~~dl 475 (789)
..+...+|.++.
T Consensus 330 ~~~~v~v~~~~~ 341 (365)
T 1jof_A 330 QEGWLEIYRWKD 341 (365)
T ss_dssp SSCEEEEEEEET
T ss_pred CCCeEEEEEEch
Confidence 556777887774
|
| >3qyj_A ALR0039 protein; alpha/beta fold, hydrolase; 1.78A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.9e-11 Score=124.31 Aligned_cols=119 Identities=14% Similarity=0.209 Sum_probs=81.5
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
.+|..++.... +..|.||++||.+.+ ...|......|+ .+|.|+++|+|| +|.+............
T Consensus 12 ~~~~~~~~~~~--------g~g~~~vllHG~~~~--~~~w~~~~~~l~-~~~~vi~~Dl~G---~G~s~~~~~~~~~~~~ 77 (291)
T 3qyj_A 12 TTEARINLVKA--------GHGAPLLLLHGYPQT--HVMWHKIAPLLA-NNFTVVATDLRG---YGDSSRPASVPHHINY 77 (291)
T ss_dssp CSSCEEEEEEE--------CCSSEEEEECCTTCC--GGGGTTTHHHHT-TTSEEEEECCTT---STTSCCCCCCGGGGGG
T ss_pred cCCeEEEEEEc--------CCCCeEEEECCCCCC--HHHHHHHHHHHh-CCCEEEEEcCCC---CCCCCCCCCCcccccc
Confidence 35666764432 134679999998764 556666666664 589999999998 5654422111111123
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
..+++.+.+..+++. +..+++.++|||+||.++..++.++|++++++|+.++.
T Consensus 78 ~~~~~~~~~~~~~~~--l~~~~~~l~GhS~Gg~ia~~~a~~~p~~v~~lvl~~~~ 130 (291)
T 3qyj_A 78 SKRVMAQDQVEVMSK--LGYEQFYVVGHDRGARVAHRLALDHPHRVKKLALLDIA 130 (291)
T ss_dssp SHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCC
T ss_pred CHHHHHHHHHHHHHH--cCCCCEEEEEEChHHHHHHHHHHhCchhccEEEEECCC
Confidence 455555544444444 34568999999999999999999999999999998754
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-10 Score=128.90 Aligned_cols=251 Identities=10% Similarity=0.014 Sum_probs=145.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
.++.+.+|||||+.||..+.+. ... + ++..+.+ .+..+.| ..++||||| .+. .
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~-----TV~-d--~~~~~~l---~gh~~~v------~~V~FsPdg-------~~~---~ 68 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDI-----SIG-Q--PKYAKDI---NCNSKNL------FHVKEFPLE-------FEN---K 68 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSE-----EEE-E--ECCCSCC---SSBGGGT------EEEEEECCC-------CCC---T
T ss_pred ccEEEEEECCCCCEEEEEcCCc-----eee-c--cccccee---cCCCccE------EEEEECCCC-------Ccc---e
Confidence 4688999999999999865542 222 2 2111111 1222233 689999999 111 1
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC-----CccceEEEeeCCCC
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-----LSVGQVVWAPLNEG 308 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-----~~~~~~~wSPDg~~ 308 (789)
..+........... .+..++....|+||+....+......+.+||.++ ....+ . .+ ..+..++|||||+.
T Consensus 69 ~~~~~~~~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l--~-~~~~~~~~sv~svafSPDG~~ 143 (588)
T 2j04_A 69 LDFELAQQNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNL--D-SKGNLSSRTYHCFEWNPIESS 143 (588)
T ss_dssp TTTSCCCSSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEEC--C-CSSCSTTTCEEEEEECSSSSC
T ss_pred EEEEeCCCceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeec--c-CCCccccccEEEEEEcCCCCE
Confidence 11221111111111 2356666788999976666667788899999654 33333 2 22 24779999999998
Q ss_pred CccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC--------eeec----CCCCCccCc
Q 003886 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP--------VVNL----TESISSAFF 376 (789)
Q Consensus 309 ~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~--------~~~L----t~~~~~~~~ 376 (789)
|+..+. +..|.++|+ .++. ...+ ..+...+..
T Consensus 144 ----LAsgs~---------------DGtVkIWd~-----------------~~~~l~~~~~i~l~ti~~~~~gh~~~V~s 187 (588)
T 2j04_A 144 ----IVVGNE---------------DGELQFFSI-----------------RKNSENTPEFYFESSIRLSDAGSKDWVTH 187 (588)
T ss_dssp ----EEEEET---------------TSEEEEEEC-----------------CCCTTTCCCCEEEEEEECSCTTCCCCEEE
T ss_pred ----EEEEcC---------------CCEEEEEEC-----------------CCCccccccceeeeeeecccccccccEEE
Confidence 887762 336777777 3332 2444 334457899
Q ss_pred ceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCC
Q 003886 377 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC 456 (789)
Q Consensus 377 p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~ 456 (789)
.+||||| |+..+.+ ..+++||+.++....+.. .+.. . ....+..+.|+ |+
T Consensus 188 VawSPdg--Laass~D-----------~tVrlWd~~~~~~~~~~~---tL~~----~--------h~~~V~svaFs--g~ 237 (588)
T 2j04_A 188 IVWYEDV--LVAALSN-----------NSVFSMTVSASSHQPVSR---MIQN----A--------SRRKITDLKIV--DY 237 (588)
T ss_dssp EEEETTE--EEEEETT-----------CCEEEECCCSSSSCCCEE---EEEC----C--------CSSCCCCEEEE--TT
T ss_pred EEEcCCc--EEEEeCC-----------CeEEEEECCCCcccccee---eecc----c--------ccCcEEEEEEE--CC
Confidence 9999999 5544433 258999987755321000 0000 0 11246678899 46
Q ss_pred EEEEEEEeCCeEEEEEEECCCCcEEEec-CCCCCceeEEe--eecCCEEEEEE
Q 003886 457 TMLLSSIWGSSQVIISVNVSSGELLRIT-PAESNFSWSLL--TLDGDNIIAVS 506 (789)
Q Consensus 457 ~l~~~~~~~~~~~l~~~dl~tg~~~~lt-~~~~~~~~~~~--s~dg~~l~~~~ 506 (789)
.|+ ++. . ..+..+|+.+++...+. .....+....+ ++++..++...
T Consensus 238 ~LA-Sa~-~--~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~ 286 (588)
T 2j04_A 238 KVV-LTC-P--GYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSN 286 (588)
T ss_dssp EEE-EEC-S--SEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECS
T ss_pred EEE-EEe-C--CeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEc
Confidence 554 433 3 35666788888885554 33334555678 88875554443
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-11 Score=136.38 Aligned_cols=279 Identities=10% Similarity=0.004 Sum_probs=160.5
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~ 235 (789)
...++|||||++|+.....+ ...+|+....... .. ...++ ......|+|||++|+..+.+.... .
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~-----~v~i~d~~~~~~~-~~-~~~~~------~~~~~~~~~~~~~l~~~~~dg~i~--i 123 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDG-----HDFLFNTIIRDGS-KM-LKRAD------YTAVDTAKLQMRRFILGTTEGDIK--V 123 (420)
T ss_dssp CTTCEEEEEETTEEEEEETT-----EEEEEECCSEETT-TT-SCSCC------EEEEEEECSSSCEEEEEETTSCEE--E
T ss_pred ccceeeeecCCeEEEEEcCC-----cEEEEEeccccee-eE-EecCC------ceEEEEEecCCCEEEEEECCCCEE--E
Confidence 34578999999999887654 4556632111110 00 01111 114557999999999887665432 3
Q ss_pred ccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceE-eccCCCCCCccceEEEeeCCCCCccEEE
Q 003886 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (789)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~~~l~ 314 (789)
|+............+........|.++....+++..+..|.+||+.+++.. .+ ......+..++|+|||+. |+
T Consensus 124 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~----l~ 197 (420)
T 3vl1_A 124 LDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL--IGHRATVTDIAIIDRGRN----VL 197 (420)
T ss_dssp ECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE--ECCSSCEEEEEEETTTTE----EE
T ss_pred EeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE--cCCCCcEEEEEEcCCCCE----EE
Confidence 332222222222344455556678888666666777889999999887654 34 233456789999999997 77
Q ss_pred EEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCC------------------------
Q 003886 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTE------------------------ 369 (789)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~------------------------ 369 (789)
..+. +..|.++|+. +++ ...+..
T Consensus 198 s~~~---------------d~~v~iwd~~-----------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 245 (420)
T 3vl1_A 198 SASL---------------DGTIRLWECG-----------------TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEI 245 (420)
T ss_dssp EEET---------------TSCEEEEETT-----------------TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGG
T ss_pred EEcC---------------CCcEEEeECC-----------------CCceeEEeecCCCCCCCccEEEEecCCcceeeec
Confidence 6552 2246666662 221 111211
Q ss_pred CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCC
Q 003886 370 SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 449 (789)
Q Consensus 370 ~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~ 449 (789)
....+...+|||||+.|+..+.+. .|++||+.++........ . +...+..+
T Consensus 246 ~~~~v~~~~~s~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~~~~~--------------~----~~~~v~~~ 296 (420)
T 3vl1_A 246 STSKKNNLEFGTYGKYVIAGHVSG-----------VITVHNVFSKEQTIQLPS--------------K----FTCSCNSL 296 (420)
T ss_dssp CCCCCCTTCSSCTTEEEEEEETTS-----------CEEEEETTTCCEEEEECC--------------T----TSSCEEEE
T ss_pred ccCcccceEEcCCCCEEEEEcCCC-----------eEEEEECCCCceeEEccc--------------c----cCCCceeE
Confidence 124567789999999988766543 499999877543211000 0 11134567
Q ss_pred ccccCCCEEEEEEEeCCeEEEEEEECCCCc--EEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 450 PWLSDGCTMLLSSIWGSSQVIISVNVSSGE--LLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 450 ~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~--~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
.|+|+++.+++++..++.. ..+|+.+++ +..+...........++++++ ++++.+... .+.+.++..
T Consensus 297 ~~~~~~~~~l~~g~~dg~i--~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~l~s~~~d~---~v~iw~~~~ 365 (420)
T 3vl1_A 297 TVDGNNANYIYAGYENGML--AQWDLRSPECPVGEFLINEGTPINNVYFAAGA-LFVSSGFDT---SIKLDIISD 365 (420)
T ss_dssp EECSSCTTEEEEEETTSEE--EEEETTCTTSCSEEEEESTTSCEEEEEEETTE-EEEEETTTE---EEEEEEECC
T ss_pred EEeCCCCCEEEEEeCCCeE--EEEEcCCCcCchhhhhccCCCCceEEEeCCCC-EEEEecCCc---cEEEEeccC
Confidence 8999998555666666654 555776664 344443233222334556665 444444332 355556543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.2e-11 Score=130.39 Aligned_cols=233 Identities=10% Similarity=0.056 Sum_probs=134.2
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
.+...+|||||++||..... +.-.+|.+. .+....+..+ ....+.| ..+.|+|||+.|+..+.+
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d--~~i~iw~~~-~~~~~~~~~~-~~h~~~v------~~~~~s~~~~~l~s~s~d------ 76 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTAT--NQVELYEQD-GNGWKHARTF-SDHDKIV------TCVDWAPKSNRIVTCSQD------ 76 (377)
T ss_dssp CCSCCEECSSSSEEECCCSS--SCBCEEEEE-TTEEEECCCB-CCCSSCE------EEEEECTTTCCEEEEETT------
T ss_pred cEEEEEECCCCCEEEEecCC--CEEEEEEcc-CCceEEEEEE-ecCCceE------EEEEEeCCCCEEEEEeCC------
Confidence 47788999999999876443 223333333 2211222122 1222233 789999999999886543
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc----eEeccCCCCCCccceEEEeeCCCCCc
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~----~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
..|.+||+.+++ ...+ ......+..+.|+|||+.
T Consensus 77 --------------------------------------~~v~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~-- 114 (377)
T 3dwl_C 77 --------------------------------------RNAYVYEKRPDGTWKQTLVL--LRLNRAATFVRWSPNEDK-- 114 (377)
T ss_dssp --------------------------------------SSEEEC------CCCCEEEC--CCCSSCEEEEECCTTSSC--
T ss_pred --------------------------------------CeEEEEEcCCCCceeeeeEe--cccCCceEEEEECCCCCE--
Confidence 468889988876 3333 334456789999999998
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC----eeecCC-CCCccCcceecCCCCE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP----VVNLTE-SISSAFFPRFSPDGKF 385 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~Lt~-~~~~~~~p~~SpDG~~ 385 (789)
|+..+. ...|.++|+ .++. .+.+.. +...+...+|+|||+.
T Consensus 115 --l~~~~~---------------d~~i~iwd~-----------------~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 115 --FAVGSG---------------ARVISVCYF-----------------EQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp --CEEEES---------------SSCEEECCC----------------------CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred --EEEEec---------------CCeEEEEEE-----------------CCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 877662 235778887 3332 456665 6777889999999999
Q ss_pred EEEEecCCCCCCCCccccceeEEeecCCCCCCCccc--------ceeeEEeeeeccCCCCCccccccCCCCCccccCCCE
Q 003886 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE--------KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 457 (789)
Q Consensus 386 la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~--------~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~ 457 (789)
|+..+.+. .|++||+..++...... ......... . ....+..+.|+|||+.
T Consensus 161 l~~~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~v~~~~~sp~~~~ 219 (377)
T 3dwl_C 161 LAAGCADR-----------KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--P--------SGGWVHAVGFSPSGNA 219 (377)
T ss_dssp EEEEESSS-----------CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--C--------CSSSEEEEEECTTSSC
T ss_pred EEEEeCCC-----------EEEEEEEEecccCCCccccccccccchhhhhhcc--c--------CCceEEEEEECCCCCE
Confidence 98877553 48888886533211000 001111111 0 1123457789999995
Q ss_pred EEEEEEeCCeEEEEEEECCCCcE-----EEecCCCCCceeEEeeecCCEEE
Q 003886 458 MLLSSIWGSSQVIISVNVSSGEL-----LRITPAESNFSWSLLTLDGDNII 503 (789)
Q Consensus 458 l~~~~~~~~~~~l~~~dl~tg~~-----~~lt~~~~~~~~~~~s~dg~~l~ 503 (789)
| +++..++...|| |+.+++. ..+......+....|+++++.|+
T Consensus 220 l-~~~~~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 267 (377)
T 3dwl_C 220 L-AYAGHDSSVTIA--YPSAPEQPPRALITVKLSQLPLRSLLWANESAIVA 267 (377)
T ss_dssp E-EEEETTTEEC-C--EECSTTSCEEECCCEECSSSCEEEEEEEETTEEEE
T ss_pred E-EEEeCCCcEEEE--ECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEE
Confidence 5 455556655555 5556653 23333333455568889887554
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=6.2e-11 Score=149.23 Aligned_cols=267 Identities=11% Similarity=0.023 Sum_probs=161.1
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
..+|||+.++.... .+.+.++++... .....+.... ..+...+|||||++|+..+..+ .+
T Consensus 968 ~~sp~g~~l~~g~~---------~g~i~i~d~~~~-~~~~~~~~h~-----~~v~~l~~s~dg~~l~s~~~dg-----~i 1027 (1249)
T 3sfz_A 968 CLSPHLEYVAFGDE---------DGAIKIIELPNN-RVFSSGVGHK-----KAVRHIQFTADGKTLISSSEDS-----VI 1027 (1249)
T ss_dssp EECTTSSEEEEEET---------TSCCEEEETTTT-SCEEECCCCS-----SCCCCEEECSSSSCEEEECSSS-----BE
T ss_pred EEcCCCCEEEEEcC---------CCCEEEEEcCCC-ceeeecccCC-----CceEEEEECCCCCEEEEEcCCC-----EE
Confidence 35788887766432 234555555222 1112222222 4577899999999999876543 45
Q ss_pred EEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceee
Q 003886 183 ELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (789)
Q Consensus 183 ~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (789)
.+|+ .++..... ...+. ...+.|+||++.+ ..+
T Consensus 1028 ~vwd~~~~~~~~~~----~~~~~------v~~~~~~~~~~l~-~~~---------------------------------- 1062 (1249)
T 3sfz_A 1028 QVWNWQTGDYVFLQ----AHQET------VKDFRLLQDSRLL-SWS---------------------------------- 1062 (1249)
T ss_dssp EEEETTTTEEECCB----CCSSC------EEEEEECSSSEEE-EEE----------------------------------
T ss_pred EEEECCCCceEEEe----cCCCc------EEEEEEcCCCcEE-EEE----------------------------------
Confidence 6663 33322211 11122 2789999988643 332
Q ss_pred CCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEE
Q 003886 261 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (789)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (789)
.+..|.+||+.+++..... ......+..++|+|||+. |+..+. +..|+++
T Consensus 1063 ----------~dg~v~vwd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~----l~s~s~---------------d~~v~iw 1112 (1249)
T 3sfz_A 1063 ----------FDGTVKVWNVITGRIERDF-TCHQGTVLSCAISSDATK----FSSTSA---------------DKTAKIW 1112 (1249)
T ss_dssp ----------SSSEEEEEETTTTCCCEEE-ECCSSCCCCEEECSSSSS----CEEECC---------------SSCCCEE
T ss_pred ----------CCCcEEEEECCCCceeEEE-cccCCcEEEEEECCCCCE----EEEEcC---------------CCcEEEE
Confidence 2257999999988754331 223446788999999998 877662 2357777
Q ss_pred ecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcc
Q 003886 341 RVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 420 (789)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t 420 (789)
|+. .......+..+.+.+...+|||||+.|+..+.+. .|++||+.++......
T Consensus 1113 d~~----------------~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg-----------~i~vwd~~~~~~~~~~ 1165 (1249)
T 3sfz_A 1113 SFD----------------LLSPLHELKGHNGCVRCSAFSLDGILLATGDDNG-----------EIRIWNVSDGQLLHSC 1165 (1249)
T ss_dssp CSS----------------SSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTS-----------CCCEEESSSSCCCCCC
T ss_pred ECC----------------CcceeeeeccCCCcEEEEEECCCCCEEEEEeCCC-----------EEEEEECCCCceEEEe
Confidence 772 3334556666777788999999999998877543 4889999876653221
Q ss_pred cceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC-CCceeEEeeecC
Q 003886 421 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDG 499 (789)
Q Consensus 421 ~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg 499 (789)
.... ... ... .....+..+.|+|||+.|+.. ++ .+..+|+.+|+.......+ ..+....|++||
T Consensus 1166 ~~~~-~~~--------~~~-~~~~~v~~l~fs~dg~~l~s~---~g--~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg 1230 (1249)
T 3sfz_A 1166 APIS-VEE--------GTA-THGGWVTDVCFSPDSKTLVSA---GG--YLKWWNVATGDSSQTFYTNGTNLKKIHVSPDF 1230 (1249)
T ss_dssp CCCC-----------------CCSCCCEEEECTTSSCEEEE---SS--SEEEBCSSSCBCCCCCCCSSCCCCCCEECSSS
T ss_pred cccc-ccc--------ccc-ccCceEEEEEECCCCCEEEEC---CC--eEEEEECCCCceeeeeeccCCcccEEEECCCC
Confidence 1000 000 000 011245678999999977543 24 4566677788765443322 234456889999
Q ss_pred CEEEEEE
Q 003886 500 DNIIAVS 506 (789)
Q Consensus 500 ~~l~~~~ 506 (789)
+.++...
T Consensus 1231 ~~l~~~~ 1237 (1249)
T 3sfz_A 1231 RTYVTVD 1237 (1249)
T ss_dssp CCEEEEC
T ss_pred CEEEEec
Confidence 8776543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.3e-11 Score=128.60 Aligned_cols=211 Identities=13% Similarity=0.086 Sum_probs=116.1
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCC-CCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKEN-ENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
++|||++++... ..+.+.++++.... .....+.... ..+...+|||||++|+..+..+ .+
T Consensus 19 ~s~~g~~l~~~~---------~d~~i~iw~~~~~~~~~~~~~~~h~-----~~v~~~~~s~~~~~l~s~s~d~-----~v 79 (377)
T 3dwl_C 19 FNSQRTEFVTTT---------ATNQVELYEQDGNGWKHARTFSDHD-----KIVTCVDWAPKSNRIVTCSQDR-----NA 79 (377)
T ss_dssp ECSSSSEEECCC---------SSSCBCEEEEETTEEEECCCBCCCS-----SCEEEEEECTTTCCEEEEETTS-----SE
T ss_pred ECCCCCEEEEec---------CCCEEEEEEccCCceEEEEEEecCC-----ceEEEEEEeCCCCEEEEEeCCC-----eE
Confidence 468998776532 22345555553321 1122332222 4588999999999999887543 35
Q ss_pred EEec--CCc-eeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCccee
Q 003886 183 ELWS--QSQ-LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (789)
Q Consensus 183 ~i~~--~~~-~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (789)
.+|+ .++ ........ ...+.| ..+.|+|||+.|+..+.+
T Consensus 80 ~vwd~~~~~~~~~~~~~~-~~~~~v------~~~~~~~~~~~l~~~~~d------------------------------- 121 (377)
T 3dwl_C 80 YVYEKRPDGTWKQTLVLL-RLNRAA------TFVRWSPNEDKFAVGSGA------------------------------- 121 (377)
T ss_dssp EEC------CCCCEEECC-CCSSCE------EEEECCTTSSCCEEEESS-------------------------------
T ss_pred EEEEcCCCCceeeeeEec-ccCCce------EEEEECCCCCEEEEEecC-------------------------------
Confidence 5662 222 11222221 122223 789999999999886543
Q ss_pred eCCcccccCCccCceEEEEEccCCc----eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCc
Q 003886 260 EEDWGETYAGKRQPSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 335 (789)
Q Consensus 260 ~~d~g~~~~~~~~~~l~v~d~~~g~----~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~ 335 (789)
..|.+||+.+++ ...+. .+....+..++|+|||+. |+..+. +.
T Consensus 122 -------------~~i~iwd~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~----l~~~~~---------------d~ 168 (377)
T 3dwl_C 122 -------------RVISVCYFEQENDWWVSKHLK-RPLRSTILSLDWHPNNVL----LAAGCA---------------DR 168 (377)
T ss_dssp -------------SCEEECCC-----CCCCEEEC-SSCCSCEEEEEECTTSSE----EEEEES---------------SS
T ss_pred -------------CeEEEEEECCcccceeeeEee-cccCCCeEEEEEcCCCCE----EEEEeC---------------CC
Confidence 457788888775 34452 113456789999999987 776652 22
Q ss_pred ceEEEecccccchhhh-hhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 336 ALYAVRVSLYKSEASE-LELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 336 ~l~~~d~~~~~~~~~~-~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
.|+++|+......... ..........++ ...+ .+...+...+|||||++|+..+.+. .|.+||+.+
T Consensus 169 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~-----------~i~iwd~~~ 236 (377)
T 3dwl_C 169 KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDS-----------SVTIAYPSA 236 (377)
T ss_dssp CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTT-----------EEC-CEECS
T ss_pred EEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCC-----------cEEEEECCC
Confidence 4666665210000000 000000000111 2233 5566688899999999998877543 588999887
Q ss_pred CCC
Q 003886 414 NGN 416 (789)
Q Consensus 414 ~~~ 416 (789)
+..
T Consensus 237 ~~~ 239 (377)
T 3dwl_C 237 PEQ 239 (377)
T ss_dssp TTS
T ss_pred CCC
Confidence 654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.24 E-value=5.6e-10 Score=121.93 Aligned_cols=229 Identities=12% Similarity=0.067 Sum_probs=139.0
Q ss_pred cccEEEEeCC-CCCeEEEEecCCCCCCeEEEEe--cCC-------ceeEEEecCCCccccccCCCcccceeecCCCC-EE
Q 003886 154 TGASAVVPSP-SGSKLLVVRNPENESPIQFELW--SQS-------QLEKEFHVPQTVHGSVYADGWFEGISWNSDET-LI 222 (789)
Q Consensus 154 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~--~~~-------~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~-~l 222 (789)
+.+...+||| +|+.|+..+..+ .+.+| ..+ +....+.. ..+.| ..+.|+|||+ .|
T Consensus 82 ~~V~~~~~~p~~~~~l~s~s~dg-----~v~vw~~~~~~~~~~~~~~~~~~~~---h~~~v------~~~~~~p~~~~~l 147 (402)
T 2aq5_A 82 APVLDIAWCPHNDNVIASGSEDC-----TVMVWEIPDGGLVLPLREPVITLEG---HTKRV------GIVAWHPTAQNVL 147 (402)
T ss_dssp SCEEEEEECTTCTTEEEEEETTS-----EEEEEECCTTCCSSCBCSCSEEEEC---CSSCE------EEEEECSSBTTEE
T ss_pred CCEEEEEeCCCCCCEEEEEeCCC-----eEEEEEccCCCCccccCCceEEecC---CCCeE------EEEEECcCCCCEE
Confidence 4688999999 888888876543 45556 222 22222221 11222 7899999995 45
Q ss_pred EEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC-CCCCCccceEE
Q 003886 223 AYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVV 301 (789)
Q Consensus 223 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~-~~~~~~~~~~~ 301 (789)
+..+. +..|.+||+.+++...... ......+..++
T Consensus 148 ~s~~~--------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 183 (402)
T 2aq5_A 148 LSAGC--------------------------------------------DNVILVWDVGTGAAVLTLGPDVHPDTIYSVD 183 (402)
T ss_dssp EEEET--------------------------------------------TSCEEEEETTTTEEEEEECTTTCCSCEEEEE
T ss_pred EEEcC--------------------------------------------CCEEEEEECCCCCccEEEecCCCCCceEEEE
Confidence 44322 2568999999887654410 12334678999
Q ss_pred EeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeec-CCCCCc-cCcce
Q 003886 302 WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNL-TESISS-AFFPR 378 (789)
Q Consensus 302 wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~L-t~~~~~-~~~p~ 378 (789)
|+|||+. |+..+ .+..|+++|+ .+++ ...+ ..+.+. .....
T Consensus 184 ~~~~~~~----l~~~~---------------~d~~i~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~~ 227 (402)
T 2aq5_A 184 WSRDGAL----ICTSC---------------RDKRVRVIEP-----------------RKGTVVAEKDRPHEGTRPVHAV 227 (402)
T ss_dssp ECTTSSC----EEEEE---------------TTSEEEEEET-----------------TTTEEEEEEECSSCSSSCCEEE
T ss_pred ECCCCCE----EEEEe---------------cCCcEEEEeC-----------------CCCceeeeeccCCCCCcceEEE
Confidence 9999998 77766 2346888998 3333 3344 344433 67899
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEE
Q 003886 379 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTM 458 (789)
Q Consensus 379 ~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l 458 (789)
|+|||+.|+...... ....|.+||+.++...... ..+ . ....+..+.|+|||+.|
T Consensus 228 ~~~~~~~l~~g~~~~--------~d~~i~iwd~~~~~~~~~~------~~~---~--------~~~~v~~~~~s~~~~~l 282 (402)
T 2aq5_A 228 FVSEGKILTTGFSRM--------SERQVALWDTKHLEEPLSL------QEL---D--------TSSGVLLPFFDPDTNIV 282 (402)
T ss_dssp ECSTTEEEEEEECTT--------CCEEEEEEETTBCSSCSEE------EEC---C--------CCSSCEEEEEETTTTEE
T ss_pred EcCCCcEEEEeccCC--------CCceEEEEcCccccCCceE------Eec---c--------CCCceeEEEEcCCCCEE
Confidence 999999777653211 1246999998775431100 000 0 00134567899999988
Q ss_pred EEEEEeCCeEEEEEEECCCCc--EEEecCC--CCCceeEEeeecCCEEE
Q 003886 459 LLSSIWGSSQVIISVNVSSGE--LLRITPA--ESNFSWSLLTLDGDNII 503 (789)
Q Consensus 459 ~~~~~~~~~~~l~~~dl~tg~--~~~lt~~--~~~~~~~~~s~dg~~l~ 503 (789)
++++..++...+| |+.+++ +..+... ........|++++..++
T Consensus 283 ~~~g~~dg~i~i~--d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 283 YLCGKGDSSIRYF--EITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp EEEETTCSCEEEE--EECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG
T ss_pred EEEEcCCCeEEEE--EecCCCcceEeecccccCCcccceEEecccccce
Confidence 7776556666665 445665 4444322 23344567888877543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2e-09 Score=124.27 Aligned_cols=279 Identities=12% Similarity=0.119 Sum_probs=160.7
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCC---CCccceeecCCcceecc-cEEEEeCC--CCCeEEEEecCCCC
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKEN---ENSVTFQWAPFPVEMTG-ASAVVPSP--SGSKLLVVRNPENE 177 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~lt~~~~~~~~~~-~~~~~~SP--dG~~la~~~~~~~~ 177 (789)
+||||+++++..+ ..+.++++.+.. .....+.... .. +...+||| ||++||.....+
T Consensus 26 ~spdg~~l~~~~~----------~~v~v~~~~~~~~~~~~~~~~~~h~-----~~~v~~~~~sp~~~~~~l~s~~~dg-- 88 (615)
T 1pgu_A 26 YDPTTNAIAYPCG----------KSAFVRCLDDGDSKVPPVVQFTGHG-----SSVVTTVKFSPIKGSQYLCSGDESG-- 88 (615)
T ss_dssp EETTTTEEEEEET----------TEEEEEECCSSCCSSCSEEEECTTT-----TSCEEEEEECSSTTCCEEEEEETTS--
T ss_pred ECCCCCEEEEecC----------CeEEEEECCCCCCccccceEEecCC-----CceEEEEEECcCCCCCEEEEecCCC--
Confidence 4699999988641 246666664221 2223333333 45 78999999 999999876643
Q ss_pred CCeEEEEec--CC------ceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcC
Q 003886 178 SPIQFELWS--QS------QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKD 249 (789)
Q Consensus 178 ~~~~~~i~~--~~------~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (789)
.+.+|+ .+ +......+. ...+.+ ..+.|||||+.|+....+..
T Consensus 89 ---~v~vw~~~~~~~~~~~~~~~~~~~~-~~~~~v------~~~~~s~~~~~l~~~~~~~~------------------- 139 (615)
T 1pgu_A 89 ---KVIVWGWTFDKESNSVEVNVKSEFQ-VLAGPI------SDISWDFEGRRLCVVGEGRD------------------- 139 (615)
T ss_dssp ---EEEEEEEEEEGGGTEEEEEEEEEEE-CCSSCE------EEEEECTTSSEEEEEECCSS-------------------
T ss_pred ---EEEEEeCCCCcccccccccccchhh-cccccE------EEEEEeCCCCEEEEeccCCC-------------------
Confidence 355552 22 112222221 112222 78999999999998765431
Q ss_pred CCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeee
Q 003886 250 CNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKY 329 (789)
Q Consensus 250 ~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~ 329 (789)
....|++|| .+.....+ ......+..+.|+||++. +++++.
T Consensus 140 ---------------------~~~~v~~~d-~~~~~~~~--~~~~~~v~~~~~~~~~~~----~l~~~~----------- 180 (615)
T 1pgu_A 140 ---------------------NFGVFISWD-SGNSLGEV--SGHSQRINACHLKQSRPM----RSMTVG----------- 180 (615)
T ss_dssp ---------------------CSEEEEETT-TCCEEEEC--CSCSSCEEEEEECSSSSC----EEEEEE-----------
T ss_pred ---------------------CccEEEEEE-CCCcceee--ecCCccEEEEEECCCCCc----EEEEEe-----------
Confidence 225677777 23334444 233446788999999996 666552
Q ss_pred eccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCC---ccCcceecCC-CCEEEEEecCCCCCCCCccccce
Q 003886 330 CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS---SAFFPRFSPD-GKFLVFLSAKSSVDSGAHSATDS 405 (789)
Q Consensus 330 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~---~~~~p~~SpD-G~~la~~s~~~~~~~g~~~~~~~ 405 (789)
....|.++|+. .......+..+.. .+...+|+|| |++|+..+.+. .
T Consensus 181 ---~d~~v~vwd~~----------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----------~ 230 (615)
T 1pgu_A 181 ---DDGSVVFYQGP----------------PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR-----------K 230 (615)
T ss_dssp ---TTTEEEEEETT----------------TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC-----------C
T ss_pred ---CCCcEEEEeCC----------------CcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCC-----------e
Confidence 23368888872 2233455655655 6888999999 99888777543 5
Q ss_pred eEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecC
Q 003886 406 LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 485 (789)
Q Consensus 406 L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~ 485 (789)
|++||+.+++...... .... . ....+..+.|+ |++.|+ ++..++. |..+|+.+++......
T Consensus 231 i~vwd~~~~~~~~~~~---------~~~~--~----~~~~v~~~~~~-~~~~l~-~~~~d~~--i~~wd~~~~~~~~~~~ 291 (615)
T 1pgu_A 231 ISCFDGKSGEFLKYIE---------DDQE--P----VQGGIFALSWL-DSQKFA-TVGADAT--IRVWDVTTSKCVQKWT 291 (615)
T ss_dssp EEEEETTTCCEEEECC---------BTTB--C----CCSCEEEEEES-SSSEEE-EEETTSE--EEEEETTTTEEEEEEE
T ss_pred EEEEECCCCCEeEEec---------cccc--c----cCCceEEEEEc-CCCEEE-EEcCCCc--EEEEECCCCcEEEEEc
Confidence 9999987755421110 0000 0 01124466788 888664 4444444 5556777777655433
Q ss_pred CC-----CCceeEEeeecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 486 AE-----SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 486 ~~-----~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
.. .......+ ++++.++....+. .+.+.++.
T Consensus 292 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~g----~i~~~d~~ 327 (615)
T 1pgu_A 292 LDKQQLGNQQVGVVA-TGNGRIISLSLDG----TLNFYELG 327 (615)
T ss_dssp CCTTCGGGCEEEEEE-EETTEEEEEETTS----CEEEEETT
T ss_pred CCCCcccCceeEEEe-CCCCeEEEEECCC----CEEEEECC
Confidence 22 11122233 3666665554332 25555543
|
| >1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A* 1tcc_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-10 Score=121.92 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=84.9
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchh-hH-HHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHH
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~-~~-~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~ 653 (789)
+.+.++.|.++.. ...+.||++||...+ ... |. .....|+++||.|+++|+|| +|.... ....+
T Consensus 16 l~~~i~~p~~~~~-~~~~~VvllHG~~~~--~~~~~~~~l~~~L~~~G~~v~~~d~~g---~g~~~~--------~~~~~ 81 (317)
T 1tca_A 16 LDAGLTCQGASPS-SVSKPILLVPGTGTT--GPQSFDSNWIPLSTQLGYTPCWISPPP---FMLNDT--------QVNTE 81 (317)
T ss_dssp HHHTEEETTBCTT-SCSSEEEEECCTTCC--HHHHHTTTHHHHHHTTTCEEEEECCTT---TTCSCH--------HHHHH
T ss_pred HhheeeCCCCCCC-CCCCeEEEECCCCCC--cchhhHHHHHHHHHhCCCEEEEECCCC---CCCCcH--------HHHHH
Confidence 4445666765532 345678999997664 333 66 67788999999999999987 332211 12356
Q ss_pred HHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCC---CceeEEEEeCCccc
Q 003886 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCN 707 (789)
Q Consensus 654 D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p---~~~~a~v~~~pv~~ 707 (789)
++.+.+++++++ .+.+++.|+|||+||.++.+++.+++ ++++++|+.+|...
T Consensus 82 ~l~~~i~~~~~~--~g~~~v~lVGhS~GG~va~~~~~~~~~~~~~v~~lV~l~~~~~ 136 (317)
T 1tca_A 82 YMVNAITALYAG--SGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 136 (317)
T ss_dssp HHHHHHHHHHHH--TTSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred HHHHHHHHHHHH--hCCCCEEEEEEChhhHHHHHHHHHcCccchhhhEEEEECCCCC
Confidence 788888888876 34578999999999999999888765 78999999988643
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-09 Score=121.76 Aligned_cols=175 Identities=13% Similarity=0.065 Sum_probs=106.8
Q ss_pred ceEEEEEcc--CCceEec-cCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchh
Q 003886 273 PSLFVININ--SGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (789)
Q Consensus 273 ~~l~v~d~~--~g~~~~l-~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (789)
..|.+||+. +++.... ........+..++|+|||+. |+..+ ....++.+++
T Consensus 125 g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~----l~~~~---------------~~g~v~~~~~------- 178 (450)
T 2vdu_B 125 KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT----VIIAD---------------KFGDVYSIDI------- 178 (450)
T ss_dssp TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE----EEEEE---------------TTSEEEEEET-------
T ss_pred CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE----EEEEe---------------CCCcEEEEec-------
Confidence 578899988 6655443 11122345678999999997 76665 2336888887
Q ss_pred hhhhhhcCCCCCCCe-----eecCCCCCccCcceecCC---CCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCc-c
Q 003886 350 SELELKESSSEDLPV-----VNLTESISSAFFPRFSPD---GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS-L 420 (789)
Q Consensus 350 ~~~~~~~~~~~~~~~-----~~Lt~~~~~~~~p~~SpD---G~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~-t 420 (789)
.++.. ..+..+...+...+|||| |++|+..+.+. .|++||+.++..... .
T Consensus 179 ----------~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~-----------~i~vwd~~~~~~~~~~~ 237 (450)
T 2vdu_B 179 ----------NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE-----------HIKISHYPQCFIVDKWL 237 (450)
T ss_dssp ----------TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS-----------CEEEEEESCTTCEEEEC
T ss_pred ----------CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCC-----------cEEEEECCCCceeeeee
Confidence 22222 245555667888999999 88887766442 589999877543211 1
Q ss_pred cceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC--------------
Q 003886 421 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-------------- 486 (789)
Q Consensus 421 ~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~-------------- 486 (789)
.+. ...+..+.|+ ||+.|+ ++..++ .|..+|+.+++.......
T Consensus 238 ~~h-------------------~~~v~~~~~s-d~~~l~-s~~~d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (450)
T 2vdu_B 238 FGH-------------------KHFVSSICCG-KDYLLL-SAGGDD--KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLA 294 (450)
T ss_dssp CCC-------------------SSCEEEEEEC-STTEEE-EEESSS--EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC
T ss_pred cCC-------------------CCceEEEEEC-CCCEEE-EEeCCC--eEEEEECCCCcEeeeecchhhhhhhhhhcccc
Confidence 010 0123466899 998664 444444 456668888875543321
Q ss_pred ------------CCCceeEEeeecCCEEEEEEeCCCCCCeEEEEee
Q 003886 487 ------------ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (789)
Q Consensus 487 ------------~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~ 520 (789)
...+....++++++.+++..... ..|.+.++
T Consensus 295 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d---~~i~iw~~ 337 (450)
T 2vdu_B 295 PPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEAT---KCIIILEM 337 (450)
T ss_dssp ----------CBCCCEEEEEECSSSSEEEEEETTC---SEEEEEEE
T ss_pred cccccccccccceEEEEEEEEeCCCCEEEEEECCC---CeEEEEEe
Confidence 11233456777787776665333 33666665
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-09 Score=116.74 Aligned_cols=262 Identities=14% Similarity=0.129 Sum_probs=155.7
Q ss_pred ceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccc
Q 003886 125 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHG 202 (789)
Q Consensus 125 ~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g 202 (789)
..+.+.++++.+ ++...+.... ....+...+|||||++|+.....+ .+.+|+ .++..+.+. ...+
T Consensus 111 ~d~~v~lw~~~~--~~~~~~~~~~---~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~---~~~~ 177 (401)
T 4aez_A 111 LERNVYVWNADS--GSVSALAETD---ESTYVASVKWSHDGSFLSVGLGNG-----LVDIYDVESQTKLRTMA---GHQA 177 (401)
T ss_dssp ETTEEEEEETTT--CCEEEEEECC---TTCCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEEEC---CCSS
T ss_pred CCCeEEEeeCCC--CcEeEeeecC---CCCCEEEEEECCCCCEEEEECCCC-----eEEEEECcCCeEEEEec---CCCC
Confidence 344677777632 2322222211 014588999999999999877543 355663 344333332 2222
Q ss_pred cccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccC
Q 003886 203 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 282 (789)
Q Consensus 203 ~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~ 282 (789)
.+ ..++| +++.|+..+. +..|.+||+..
T Consensus 178 ~v------~~~~~--~~~~l~~~~~--------------------------------------------dg~i~i~d~~~ 205 (401)
T 4aez_A 178 RV------GCLSW--NRHVLSSGSR--------------------------------------------SGAIHHHDVRI 205 (401)
T ss_dssp CE------EEEEE--ETTEEEEEET--------------------------------------------TSEEEEEETTS
T ss_pred ce------EEEEE--CCCEEEEEcC--------------------------------------------CCCEEEEeccc
Confidence 22 67888 4566665432 35788999874
Q ss_pred -Cc-eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCC
Q 003886 283 -GE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSE 360 (789)
Q Consensus 283 -g~-~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 360 (789)
+. ...+ ......+..+.|+|||+. |+..+ .+..|+++|+ .
T Consensus 206 ~~~~~~~~--~~~~~~v~~~~~~~~~~~----l~s~~---------------~d~~v~iwd~-----------------~ 247 (401)
T 4aez_A 206 ANHQIGTL--QGHSSEVCGLAWRSDGLQ----LASGG---------------NDNVVQIWDA-----------------R 247 (401)
T ss_dssp SSCEEEEE--ECCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEET-----------------T
T ss_pred CcceeeEE--cCCCCCeeEEEEcCCCCE----EEEEe---------------CCCeEEEccC-----------------C
Confidence 33 3333 233456788999999987 66655 2336888898 3
Q ss_pred CC-CeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCc
Q 003886 361 DL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFP 439 (789)
Q Consensus 361 ~~-~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~ 439 (789)
++ ....+..+...+...+|+|+|+.++...... ....|++||+.++...... ...
T Consensus 248 ~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs--------~d~~i~i~d~~~~~~~~~~----------~~~------ 303 (401)
T 4aez_A 248 SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGT--------MDKQIHFWNAATGARVNTV----------DAG------ 303 (401)
T ss_dssp CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCT--------TTCEEEEEETTTCCEEEEE----------ECS------
T ss_pred CCCccEEecCCcceEEEEEECCCCCCEEEEecCC--------CCCEEEEEECCCCCEEEEE----------eCC------
Confidence 33 3445666777889999999998887765311 1246999998875432111 000
Q ss_pred cccccCCCCCccccCCCEEEEEEE-eCCeEEEEEEECCCCcEEEe---cCCCCCceeEEeeecCCEEEEEEeCCCCCCeE
Q 003886 440 GLYSSSILSNPWLSDGCTMLLSSI-WGSSQVIISVNVSSGELLRI---TPAESNFSWSLLTLDGDNIIAVSSSPVDVPQV 515 (789)
Q Consensus 440 g~~~~~~~~~~ws~Dg~~l~~~~~-~~~~~~l~~~dl~tg~~~~l---t~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i 515 (789)
..+..+.|+|||+.++..+. .++...+| |+.+++...+ ......+....+++++..|+....+ ..|
T Consensus 304 ----~~v~~~~~s~~~~~l~~~~g~~dg~i~v~--~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~d----g~i 373 (401)
T 4aez_A 304 ----SQVTSLIWSPHSKEIMSTHGFPDNNLSIW--SYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASD----ENL 373 (401)
T ss_dssp ----SCEEEEEECSSSSEEEEEECTTTCEEEEE--EEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTT----SEE
T ss_pred ----CcEEEEEECCCCCeEEEEeecCCCcEEEE--ecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCC----CcE
Confidence 12446789999997765532 34555555 4446655543 2333344556889998876654332 246
Q ss_pred EEEeeccc
Q 003886 516 KYGYFVDK 523 (789)
Q Consensus 516 ~~~~~~~~ 523 (789)
.+.++.++
T Consensus 374 ~iw~~~~~ 381 (401)
T 4aez_A 374 KFWRVYDG 381 (401)
T ss_dssp EEEECCC-
T ss_pred EEEECCCC
Confidence 66666543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.4e-09 Score=120.36 Aligned_cols=303 Identities=8% Similarity=-0.012 Sum_probs=165.5
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCCCC-ccceeecCCcceecccEEEEeCC----CCCeEEEEecCCCCC
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENEN-SVTFQWAPFPVEMTGASAVVPSP----SGSKLLVVRNPENES 178 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~lt~~~~~~~~~~~~~~~~SP----dG~~la~~~~~~~~~ 178 (789)
.||||++++.. +. ...|.++++.....+ ...+..+ ......+||| ||++|+.....+
T Consensus 186 ~spdg~~l~v~-~~--------d~~V~v~D~~~~t~~~~~~i~~g------~~p~~va~sp~~~~dg~~l~v~~~~~--- 247 (543)
T 1nir_A 186 MSASGRYLLVI-GR--------DARIDMIDLWAKEPTKVAEIKIG------IEARSVESSKFKGYEDRYTIAGAYWP--- 247 (543)
T ss_dssp ECTTSCEEEEE-ET--------TSEEEEEETTSSSCEEEEEEECC------SEEEEEEECCSTTCTTTEEEEEEEES---
T ss_pred ECCCCCEEEEE-CC--------CCeEEEEECcCCCCcEEEEEecC------CCcceEEeCCCcCCCCCEEEEEEccC---
Confidence 57898877443 21 145777766211111 1122211 3467889999 999987765432
Q ss_pred CeEEEEe-cCCceeEEEecCCC-ccccccC-CCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCC
Q 003886 179 PIQFELW-SQSQLEKEFHVPQT-VHGSVYA-DGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 255 (789)
Q Consensus 179 ~~~~~i~-~~~~~~~~~~~~~~-~~g~v~~-d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (789)
.++.+++ .+++..+.+..... ..+..|. +.....+.+|||++.+++...
T Consensus 248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~---------------------------- 299 (543)
T 1nir_A 248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK---------------------------- 299 (543)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET----------------------------
T ss_pred CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC----------------------------
Confidence 2344444 45555555554211 0000011 112367899999987765432
Q ss_pred cceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCc
Q 003886 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 335 (789)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~ 335 (789)
....|++||..+++...+..++.......+.|+|||++ ++..+ .. ..
T Consensus 300 ---------------~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~----l~va~-~~-------------~~ 346 (543)
T 1nir_A 300 ---------------ETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRY----FMTAA-NN-------------SN 346 (543)
T ss_dssp ---------------TTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCE----EEEEE-GG-------------GT
T ss_pred ---------------CCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCE----EEEEe-cC-------------CC
Confidence 23679999988765322110222334667899999997 54443 21 22
Q ss_pred ceEEEecccccchhhhhhhhcCCCCCCCeee-cCCCC--CccCcce-ecCCCCEEEEEecCCCCCCCCccccceeEEeec
Q 003886 336 ALYAVRVSLYKSEASELELKESSSEDLPVVN-LTESI--SSAFFPR-FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 411 (789)
Q Consensus 336 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-Lt~~~--~~~~~p~-~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~ 411 (789)
.|.++|+ .++++.. +..+. ....... ++||+..++.+.... ...|.+||.
T Consensus 347 ~v~v~D~-----------------~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~---------d~~V~v~d~ 400 (543)
T 1nir_A 347 KVAVIDS-----------------KDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLG---------DGSISLIGT 400 (543)
T ss_dssp EEEEEET-----------------TTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSS---------SSEEEEEEC
T ss_pred eEEEEEC-----------------CCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCC---------CceEEEEEe
Confidence 6888998 5555443 32211 1112233 478876664443321 236889998
Q ss_pred CCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeC----CeEEEEEEECCCCcEE-Ee---
Q 003886 412 PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG----SSQVIISVNVSSGELL-RI--- 483 (789)
Q Consensus 412 ~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~----~~~~l~~~dl~tg~~~-~l--- 483 (789)
++.+.... ...++..+.... .....+.++|||+.|++..... ....|.++|+++++.. .+
T Consensus 401 ~~~~~~~~---~~~~v~~l~~~g---------~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v 468 (543)
T 1nir_A 401 DPKNHPQY---AWKKVAELQGQG---------GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPI 468 (543)
T ss_dssp CTTTCTTT---BTSEEEEEECSC---------SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECH
T ss_pred CCCCCchh---cCeEEEEEEcCC---------CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeec
Confidence 77332110 012222222211 1234567899999887654211 1346888898887754 32
Q ss_pred ------cCCCCCceeEEeeecCCEEEEEEeCC-CCCCeEEEEeeccc
Q 003886 484 ------TPAESNFSWSLLTLDGDNIIAVSSSP-VDVPQVKYGYFVDK 523 (789)
Q Consensus 484 ------t~~~~~~~~~~~s~dg~~l~~~~ss~-~~p~~i~~~~~~~~ 523 (789)
...........|+++|+.++++.-+. .....|.++|..+.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 469 AEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp HHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred hhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCc
Confidence 12222344568999999998876433 34567888886654
|
| >2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase; HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A* 1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A* 2hrq_A* 3k9b_A* 1k4y_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-11 Score=140.40 Aligned_cols=132 Identities=23% Similarity=0.259 Sum_probs=96.3
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchh-hHHHHHHHH-HCCcEEEEEcCC-CCCCCCchhhccCCCC
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YSKSLAFLS-SVGYSLLIVNYR-GSLGFGEEALQSLPGK 646 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~-~~~~~~~la-~~Gy~V~~~d~r-Gs~G~G~~~~~~~~~~ 646 (789)
+.|++.+. ++.|......++.|+||++|||+....... |. ...|+ +.|++|+.+||| |..|++........
T Consensus 95 ~edcl~ln--v~~P~~~~~~~~~Pv~v~iHGG~~~~g~~~~~~--~~~la~~~g~vvv~~nYRlg~~gf~~~~~~~~~-- 168 (542)
T 2h7c_A 95 SEDCLYLN--IYTPADLTKKNRLPVMVWIHGGGLMVGAASTYD--GLALAAHENVVVVTIQYRLGIWGFFSTGDEHSR-- 168 (542)
T ss_dssp ESCCCEEE--EEECSCTTSCCCEEEEEEECCSTTTSCCSTTSC--CHHHHHHHTCEEEEECCCCHHHHHCCCSSTTCC--
T ss_pred CCCCcEEE--EEECCCCCCCCCCCEEEEECCCcccCCCccccC--HHHHHhcCCEEEEecCCCCccccCCCCCcccCc--
Confidence 34665554 778876545578999999999886543332 22 22344 589999999999 65555543322223
Q ss_pred CCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHh--CCCceeEEEEeCCccch
Q 003886 647 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCNL 708 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~--~p~~~~a~v~~~pv~~~ 708 (789)
+...+.|+.++++|+.++. ..|++||+|+|+|+||+++..++.. .+.+|+++|+.+|....
T Consensus 169 -~n~gl~D~~~al~wv~~ni~~fggDp~~Vtl~G~SaGg~~~~~~~~~~~~~~lf~~ai~~Sg~~~~ 234 (542)
T 2h7c_A 169 -GNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVALT 234 (542)
T ss_dssp -CCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTTC
T ss_pred -cchhHHHHHHHHHHHHHHHHHcCCCccceEEEEechHHHHHHHHHhhhhhhHHHHHHhhhcCCccC
Confidence 3334789999999998752 3799999999999999999998875 35799999999997654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-09 Score=116.27 Aligned_cols=249 Identities=8% Similarity=0.061 Sum_probs=144.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
..+...+|||||+.|++....+ .+.+| ..++...+..+. ...+.| ..+.|+|||+.|+..+.+
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~-----~v~i~~~~~~~~~~~~~~~-~h~~~v------~~~~~~~~~~~l~~~~~d--- 73 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNH-----EVHIYEKSGNKWVQVHELK-EHNGQV------TGVDWAPDSNRIVTCGTD--- 73 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSS-----EEEEEEEETTEEEEEEEEE-CCSSCE------EEEEEETTTTEEEEEETT---
T ss_pred CCeEEEEECCCCCEEEEEeCCC-----EEEEEeCCCCcEEeeeeec-CCCCcc------cEEEEeCCCCEEEEEcCC---
Confidence 3578899999999999875443 34555 344311222221 122222 789999999999876432
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEecc-CCCCCCccceEEEeeCCCCCc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~~~~wSPDg~~~~ 310 (789)
..|.+||+.+++..... -......+..+.|+|||+.
T Consensus 74 -----------------------------------------g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-- 110 (372)
T 1k8k_C 74 -----------------------------------------RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK-- 110 (372)
T ss_dssp -----------------------------------------SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSE--
T ss_pred -----------------------------------------CeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCE--
Confidence 46889999888743221 0233446789999999987
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC----eeec-CCCCCccCcceecCCCCE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP----VVNL-TESISSAFFPRFSPDGKF 385 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~----~~~L-t~~~~~~~~p~~SpDG~~ 385 (789)
|+..+. ...|+++|+ ..+. ...+ ..+...+...+|+|||+.
T Consensus 111 --l~~~~~---------------d~~v~i~d~-----------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (372)
T 1k8k_C 111 --FAVGSG---------------SRVISICYF-----------------EQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 156 (372)
T ss_dssp --EEEEET---------------TSSEEEEEE-----------------ETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred --EEEEeC---------------CCEEEEEEe-----------------cCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence 766652 235666666 2222 2233 334566888999999999
Q ss_pred EEEEecCCCCCCCCccccceeEEeecCCCCCCCccc--------ceeeEEeeeeccCCCCCccccccCCCCCccccCCCE
Q 003886 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE--------KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCT 457 (789)
Q Consensus 386 la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~--------~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~ 457 (789)
|+..+.+. .|++||+.......... .......... + ....+..+.|+||++.
T Consensus 157 l~~~~~dg-----------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~v~~~~~~~~~~~ 216 (372)
T 1k8k_C 157 LAAGSCDF-----------KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS--------S-SCGWVHGVCFSANGSR 216 (372)
T ss_dssp EEEEETTS-----------CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC--------C-CSSCEEEEEECSSSSE
T ss_pred EEEEcCCC-----------CEEEEEcccccccccccccccccccchhhheEecC--------C-CCCeEEEEEECCCCCE
Confidence 88776543 48888865322110000 0000111000 0 0113456789999986
Q ss_pred EEEEEEeCCeEEEEEEECCCCcEEEecCC-CCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 458 MLLSSIWGSSQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 458 l~~~~~~~~~~~l~~~dl~tg~~~~lt~~-~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
|+ ++..++. |..+|+.+++....... ...+....+++++..++ +. ... .+.+.++..
T Consensus 217 l~-~~~~d~~--i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~---~i~i~~~~~ 274 (372)
T 1k8k_C 217 VA-WVSHDST--VCLADADKKMAVATLASETLPLLAVTFITESSLVA-AG-HDC---FPVLFTYDS 274 (372)
T ss_dssp EE-EEETTTE--EEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEE-EE-TTS---SCEEEEEET
T ss_pred EE-EEeCCCE--EEEEECCCCceeEEEccCCCCeEEEEEecCCCEEE-EE-eCC---eEEEEEccC
Confidence 64 4455554 55557767765544333 33455567888887544 33 222 255556544
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.1e-10 Score=131.06 Aligned_cols=278 Identities=13% Similarity=0.105 Sum_probs=155.7
Q ss_pred cceeEEEEEEeecCCCC----ccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecC
Q 003886 124 KRKKFMLSTVISKENEN----SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVP 197 (789)
Q Consensus 124 ~~~~~l~~~~~~~~~~~----~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~ 197 (789)
...+.+.++++...... .+.++.+. ..+...+|||||++|+..+..+ .+.+|+ .+...+.+.
T Consensus 402 s~D~~i~~W~~~~~~~~~~~~~~~~~~h~-----~~v~~v~~s~~g~~l~sgs~Dg-----~v~vwd~~~~~~~~~~~-- 469 (694)
T 3dm0_A 402 SRDKSIILWKLTKDDKAYGVAQRRLTGHS-----HFVEDVVLSSDGQFALSGSWDG-----ELRLWDLAAGVSTRRFV-- 469 (694)
T ss_dssp ETTSEEEEEECCCSTTCSCEEEEEEECCS-----SCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEE--
T ss_pred eCCCcEEEEEccCCCcccccccceecCCC-----CcEEEEEECCCCCEEEEEeCCC-----cEEEEECCCCcceeEEe--
Confidence 34456777776443221 12333333 4578899999999999876654 567773 343333332
Q ss_pred CCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCC---CCCCCcCCCCCCCcceeeCCcc--cccCCccC
Q 003886 198 QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK---GGSSDKDCNSWKGQGDWEEDWG--ETYAGKRQ 272 (789)
Q Consensus 198 ~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~g--~~~~~~~~ 272 (789)
++.+.| ..+.|||||+.|+..+.+.... .|+..... .......+..+.....|.++.. ...++..+
T Consensus 470 -~h~~~v------~~~~~s~~~~~l~s~s~D~~i~--iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d 540 (694)
T 3dm0_A 470 -GHTKDV------LSVAFSLDNRQIVSASRDRTIK--LWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWD 540 (694)
T ss_dssp -CCSSCE------EEEEECTTSSCEEEEETTSCEE--EECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred -CCCCCE------EEEEEeCCCCEEEEEeCCCEEE--EEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCC
Confidence 222223 7899999999999888776543 23321100 0011123444455566777642 23455567
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
..|.+||+.+++..... ......+..++|+|||+. |+..+ .+..|.++|+
T Consensus 541 ~~v~vwd~~~~~~~~~~-~~h~~~v~~v~~spdg~~----l~sg~---------------~Dg~i~iwd~---------- 590 (694)
T 3dm0_A 541 KTVKVWNLSNCKLRSTL-AGHTGYVSTVAVSPDGSL----CASGG---------------KDGVVLLWDL---------- 590 (694)
T ss_dssp SCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSBCEEEET----------
T ss_pred CeEEEEECCCCcEEEEE-cCCCCCEEEEEEeCCCCE----EEEEe---------------CCCeEEEEEC----------
Confidence 88999999988765441 233446788999999997 76655 2336888887
Q ss_pred hhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCccc-ceeeEEeeee
Q 003886 353 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE-KIVDVIPVVQ 431 (789)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~-~~~~v~~~~~ 431 (789)
.+++..........+...+|||||..|+.... ..|.+||+.++....... ..........
T Consensus 591 -------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 651 (694)
T 3dm0_A 591 -------AEGKKLYSLEANSVIHALCFSPNRYWLCAATE------------HGIKIWDLESKSIVEDLKVDLKAEAEKAD 651 (694)
T ss_dssp -------TTTEEEECCBCSSCEEEEEECSSSSEEEEEET------------TEEEEEETTTTEEEEEECCCCC-------
T ss_pred -------CCCceEEEecCCCcEEEEEEcCCCcEEEEEcC------------CCEEEEECCCCCChhhhcccccccccccc
Confidence 34433222223445778899999987765442 248999988754321100 0000000000
Q ss_pred ccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 432 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
......... ....+..+.|+|||+.| +++..++...||.+
T Consensus 652 ~~~~~~~~~-~~~~~~~l~~spdg~~l-~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 652 NSGPAATKR-KVIYCTSLNWSADGSTL-FSGYTDGVIRVWGI 691 (694)
T ss_dssp ----------CCCCEEEEEECTTSSEE-EEEETTSEEEEEEC
T ss_pred ccccccCCc-eeEEeeeEEEcCCCCEE-EEEcCCCeEEEEec
Confidence 000000000 00012356799999965 56777777777754
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-09 Score=116.42 Aligned_cols=272 Identities=11% Similarity=0.015 Sum_probs=155.9
Q ss_pred ccEEEEe-----CC-CCCeEEEEecCCCCCCeEEEEec--CCc-----eeEEEecCCCccccccCCCcccceeecCCCCE
Q 003886 155 GASAVVP-----SP-SGSKLLVVRNPENESPIQFELWS--QSQ-----LEKEFHVPQTVHGSVYADGWFEGISWNSDETL 221 (789)
Q Consensus 155 ~~~~~~~-----SP-dG~~la~~~~~~~~~~~~~~i~~--~~~-----~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~ 221 (789)
.+...+| +| ||+.|+..+.++ ...+|+ .++ ......+ .+..+.| ..+.|+||++.
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~-----~v~iWd~~~~~~~~~~~~~~~~l-~~h~~~V------~~~~~~~~~~~ 90 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRDK-----TVMIWKLYEEEQNGYFGIPHKAL-TGHNHFV------SDLALSQENCF 90 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETTS-----CEEEEEECSSCCSSBSEEEEEEE-CCCSSCE------EEEEECSSTTE
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCCC-----EEEEEECCcCCcccccccccchh-ccCCCce------EEEEECCCCCE
Confidence 4677788 77 999998776543 345552 111 1111112 1222333 78999999999
Q ss_pred EEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCC-CCCCccceE
Q 003886 222 IAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI-PKSLSVGQV 300 (789)
Q Consensus 222 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~-~~~~~~~~~ 300 (789)
|+..+.+...+ .|+............+........|.++....+++..+..|.+||+.+......... .....+..+
T Consensus 91 l~s~s~D~~v~--lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~ 168 (343)
T 2xzm_R 91 AISSSWDKTLR--LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCV 168 (343)
T ss_dssp EEEEETTSEEE--EEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEE
T ss_pred EEEEcCCCcEE--EEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeee
Confidence 98877665433 344332222223334555555677888866666677788999999985544433111 223356788
Q ss_pred EEeeCCCCC------ccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCcc
Q 003886 301 VWAPLNEGL------HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSA 374 (789)
Q Consensus 301 ~wSPDg~~~------~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~ 374 (789)
.|+|+++.. ...|+..+ .+..|.++|. .......+..+...+
T Consensus 169 ~~~~~~~~~~~~~~~~~~l~s~~---------------~d~~i~iwd~-----------------~~~~~~~~~~h~~~v 216 (343)
T 2xzm_R 169 RYSPIMKSANKVQPFAPYFASVG---------------WDGRLKVWNT-----------------NFQIRYTFKAHESNV 216 (343)
T ss_dssp EECCCCCSCSCCCSSCCEEEEEE---------------TTSEEEEEET-----------------TTEEEEEEECCSSCE
T ss_pred eeccccccccccCCCCCEEEEEc---------------CCCEEEEEcC-----------------CCceeEEEcCccccc
Confidence 999998420 00144333 2235777775 444445566666778
Q ss_pred CcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccC
Q 003886 375 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 454 (789)
Q Consensus 375 ~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~D 454 (789)
...+|||||++|+..+.+. .|.+||+............ ...+..+.|+||
T Consensus 217 ~~~~~s~~g~~l~sgs~dg-----------~v~iwd~~~~~~~~~~~~~-------------------~~~v~~v~~sp~ 266 (343)
T 2xzm_R 217 NHLSISPNGKYIATGGKDK-----------KLLIWDILNLTYPQREFDA-------------------GSTINQIAFNPK 266 (343)
T ss_dssp EEEEECTTSSEEEEEETTC-----------EEEEEESSCCSSCSEEEEC-------------------SSCEEEEEECSS
T ss_pred eEEEECCCCCEEEEEcCCC-----------eEEEEECCCCcccceeecC-------------------CCcEEEEEECCC
Confidence 8899999999998777543 5899998443221110000 012346789999
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCcEE---EecC----------C-CCCceeEEeeecCCEEEEEE
Q 003886 455 GCTMLLSSIWGSSQVIISVNVSSGELL---RITP----------A-ESNFSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 455 g~~l~~~~~~~~~~~l~~~dl~tg~~~---~lt~----------~-~~~~~~~~~s~dg~~l~~~~ 506 (789)
++.+. .+ .++. +..+|+.+++.. .+.. . ........|+++|+.|+...
T Consensus 267 ~~~la-~~-~d~~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~ 328 (343)
T 2xzm_R 267 LQWVA-VG-TDQG--VKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF 328 (343)
T ss_dssp SCEEE-EE-ESSC--EEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE
T ss_pred CCEEE-EE-CCCC--EEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEec
Confidence 97553 33 3444 444566555432 2221 1 11234457888888766544
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.9e-09 Score=114.47 Aligned_cols=247 Identities=12% Similarity=0.109 Sum_probs=147.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCC--CCEEEEEeecC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEP 229 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpD--g~~la~~~~~~ 229 (789)
..+...+|||||++||.....+ .+.+|+ .+....+..+. ...+.| ..+.|+|+ ++.|+..+.+
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~-~h~~~v------~~~~~~~~~~~~~l~s~~~d- 78 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDK-----TIKIFEVEGETHKLIDTLT-GHEGPV------WRVDWAHPKFGTILASCSYD- 78 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTS-----CEEEEEEETTEEEEEEEEC-CCSSCE------EEEEECCGGGCSEEEEEETT-
T ss_pred ccEEEEEEcCCCCEEEEEECCC-----cEEEEecCCCcceeeeEec-CCCCcE------EEEEeCCCCCCCEEEEeccC-
Confidence 4588999999999999876543 345552 22222222221 222333 78999988 8888776443
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC-CCCCCccceEEEeeC--C
Q 003886 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPL--N 306 (789)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~-~~~~~~~~~~~wSPD--g 306 (789)
..|.+||+.+++...+.. ......+..+.|+|+ +
T Consensus 79 -------------------------------------------g~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 115 (379)
T 3jrp_A 79 -------------------------------------------GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 115 (379)
T ss_dssp -------------------------------------------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred -------------------------------------------CEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCC
Confidence 568899999886322210 233456789999999 7
Q ss_pred CCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecC-----
Q 003886 307 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSP----- 381 (789)
Q Consensus 307 ~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~Sp----- 381 (789)
+. |+..+ ....|.++|+... .......+..+...+..+.|+|
T Consensus 116 ~~----l~~~~---------------~d~~i~v~d~~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 116 PL----LLVAS---------------SDGKVSVVEFKEN--------------GTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp SE----EEEEE---------------TTSEEEEEECCTT--------------SCCCEEEEECCTTCEEEEEECCCC---
T ss_pred CE----EEEec---------------CCCcEEEEecCCC--------------CceeeEEecCCCCceEEEEEcCccccc
Confidence 76 66655 2336788887210 1123344556666788999999
Q ss_pred --------CCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCcccc
Q 003886 382 --------DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 453 (789)
Q Consensus 382 --------DG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~ 453 (789)
||+.|+..+.+. .|++||+.++.... ........ ....+..+.|+|
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg-----------~i~i~d~~~~~~~~------~~~~~~~~---------h~~~v~~~~~sp 216 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADN-----------LVKIWKYNSDAQTY------VLESTLEG---------HSDWVRDVAWSP 216 (379)
T ss_dssp -------CTTCEEEEEETTS-----------CEEEEEEETTTTEE------EEEEEECC---------CSSCEEEEEECC
T ss_pred cccccCCCCCCEEEEEeCCC-----------eEEEEEecCCCcce------eeEEEEec---------ccCcEeEEEECC
Confidence 799888777543 58899987644310 01111100 011345678999
Q ss_pred CC--CEEEEEEEeCCeEEEEEEECCCCc---EEEecC---CCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 454 DG--CTMLLSSIWGSSQVIISVNVSSGE---LLRITP---AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 454 Dg--~~l~~~~~~~~~~~l~~~dl~tg~---~~~lt~---~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
|+ ..+++++..++...+|.++ +++ ...+.. ....+....|+++++.|+....+ . .+.+.++.
T Consensus 217 ~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d-g---~i~iw~~~ 286 (379)
T 3jrp_A 217 TVLLRSYLASVSQDRTCIIWTQD--NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGD-N---KVTLWKEN 286 (379)
T ss_dssp CCSSSEEEEEEETTSCEEEEEES--STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESS-S---SEEEEEEE
T ss_pred CCCCCCeEEEEeCCCEEEEEeCC--CCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCC-C---cEEEEeCC
Confidence 93 3466677777776676554 442 233322 22234556889999877665542 2 25555544
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-09 Score=117.42 Aligned_cols=248 Identities=12% Similarity=0.059 Sum_probs=141.8
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
.++|||+.++... ..+.+.++++... .....+.... ..+...+|+|||++|+..+..+ ..
T Consensus 130 ~~s~dg~~l~s~~---------~d~~i~iwd~~~~-~~~~~~~~h~-----~~v~~~~~~p~~~~l~s~s~d~-----~v 189 (393)
T 1erj_A 130 CFSPDGKFLATGA---------EDRLIRIWDIENR-KIVMILQGHE-----QDIYSLDYFPSGDKLVSGSGDR-----TV 189 (393)
T ss_dssp EECTTSSEEEEEE---------TTSCEEEEETTTT-EEEEEECCCS-----SCEEEEEECTTSSEEEEEETTS-----EE
T ss_pred EECCCCCEEEEEc---------CCCeEEEEECCCC-cEEEEEccCC-----CCEEEEEEcCCCCEEEEecCCC-----cE
Confidence 4579999886532 2345666665321 1112222222 4588899999999998876554 56
Q ss_pred EEec--CCceeEEEecCCCccccccCCCcccceeecC-CCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCccee
Q 003886 183 ELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNS-DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (789)
Q Consensus 183 ~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (789)
.+|+ .++....+.....+ ..+.|+| ||+.|+..+.+
T Consensus 190 ~iwd~~~~~~~~~~~~~~~v----------~~~~~~~~~~~~l~~~s~d------------------------------- 228 (393)
T 1erj_A 190 RIWDLRTGQCSLTLSIEDGV----------TTVAVSPGDGKYIAAGSLD------------------------------- 228 (393)
T ss_dssp EEEETTTTEEEEEEECSSCE----------EEEEECSTTCCEEEEEETT-------------------------------
T ss_pred EEEECCCCeeEEEEEcCCCc----------EEEEEECCCCCEEEEEcCC-------------------------------
Confidence 6773 44444433332222 6899999 89888876443
Q ss_pred eCCcccccCCccCceEEEEEccCCceEe-ccC-----CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccC
Q 003886 260 EEDWGETYAGKRQPSLFVININSGEVQA-VKG-----IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 333 (789)
Q Consensus 260 ~~d~g~~~~~~~~~~l~v~d~~~g~~~~-l~~-----~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~ 333 (789)
..|.+||+.+++... +.. ......+..++|+|||+. |+..+.
T Consensus 229 -------------~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~----l~s~s~--------------- 276 (393)
T 1erj_A 229 -------------RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS----VVSGSL--------------- 276 (393)
T ss_dssp -------------SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSE----EEEEET---------------
T ss_pred -------------CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCE----EEEEeC---------------
Confidence 468888988876543 210 112335778999999997 665542
Q ss_pred CcceEEEecccccchhhhhhhhcCCCCCC-CeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecC
Q 003886 334 PCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 412 (789)
Q Consensus 334 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~ 412 (789)
+..|.++|+....... .......+ ....+..+...+...+|+|||++|+..+.+. .|++||+.
T Consensus 277 d~~v~~wd~~~~~~~~-----~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~-----------~v~iwd~~ 340 (393)
T 1erj_A 277 DRSVKLWNLQNANNKS-----DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR-----------GVLFWDKK 340 (393)
T ss_dssp TSEEEEEEC--------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS-----------EEEEEETT
T ss_pred CCEEEEEECCCCCCcc-----cccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC-----------eEEEEECC
Confidence 2356677763110000 00000111 1234455666678899999999988766443 58999988
Q ss_pred CCCCCCccccee-eEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003886 413 TNGNFSSLEKIV-DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (789)
Q Consensus 413 ~~~~~~~t~~~~-~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~d 474 (789)
++.......+.. .+..+.. .....|+|+++ +++++..++...||.+.
T Consensus 341 ~~~~~~~l~~h~~~v~~v~~--------------~~~~~~~p~~~-~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 341 SGNPLLMLQGHRNSVISVAV--------------ANGSSLGPEYN-VFATGSGDCKARIWKYK 388 (393)
T ss_dssp TCCEEEEEECCSSCEEEEEE--------------CSSCTTCTTCE-EEEEEETTSEEEEEEEE
T ss_pred CCeEEEEECCCCCCEEEEEe--------------cCCcCcCCCCC-EEEEECCCCcEEECccc
Confidence 765422111111 1111000 01224566776 55777888888888765
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-09 Score=114.66 Aligned_cols=113 Identities=12% Similarity=0.065 Sum_probs=65.8
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCc--cccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTV--HGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~--~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
....++|||||+++++.... ..+++.++ .+++....+...... ++. ....+.|||||++|++...+...
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~---~~~i~~~d~~t~~~~~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~~~~~~~~~ 115 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNH---YGDIYGIDLDTCKNTFHANLSSVPGEVGR-----SMYSFAISPDGKEVYATVNPTQR 115 (349)
T ss_dssp SSCEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEESCCSTTEEEE-----CSSCEEECTTSSEEEEEEEEEEE
T ss_pred CCceeEECCCCCEEEEEeCC---CCcEEEEeCCCCcEEEEEEcccccccccc-----cccceEECCCCCEEEEEcccccc
Confidence 36688999999988776532 23566666 456555555542210 000 11688999999999887654110
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEecc-CCCCCCccceEEEeeCCC
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNE 307 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~~~~wSPDg~ 307 (789)
.. ..| ......|++||+++++..... .......+..++|+|||+
T Consensus 116 ~~-----------------------~~~---------~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 116 LN-----------------------DHY---------VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 160 (349)
T ss_dssp CS-----------------------SCE---------EECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred cc-----------------------ccc---------ccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc
Confidence 00 000 002368999999886543221 011223466788999997
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-10 Score=120.70 Aligned_cols=235 Identities=9% Similarity=0.014 Sum_probs=143.1
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
..+|||+.++-.. ..+.+.++++.+ +.....+.... ..+...+|+|||++|+..+... .+
T Consensus 20 ~fsp~~~~l~s~~---------~dg~v~lWd~~~-~~~~~~~~~~~-----~~v~~~~~~~~~~~l~s~s~d~-----~i 79 (304)
T 2ynn_A 20 DFHPTEPWVLTTL---------YSGRVELWNYET-QVEVRSIQVTE-----TPVRAGKFIARKNWIIVGSDDF-----RI 79 (304)
T ss_dssp EECSSSSEEEEEE---------TTSEEEEEETTT-TEEEEEEECCS-----SCEEEEEEEGGGTEEEEEETTS-----EE
T ss_pred EECCCCCEEEEEc---------CCCcEEEEECCC-CceeEEeeccC-----CcEEEEEEeCCCCEEEEECCCC-----EE
Confidence 3468998776432 234566666532 22222333222 3477889999999999877654 56
Q ss_pred EEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCC-CCCCCCcCCCCCCCccee
Q 003886 183 ELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST-KGGSSDKDCNSWKGQGDW 259 (789)
Q Consensus 183 ~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 259 (789)
.+|+ .++....+.. ..+.| ..++|+||++.|+..+.+.... .|+.... ........+........|
T Consensus 80 ~vwd~~~~~~~~~~~~---h~~~v------~~~~~~~~~~~l~sgs~D~~v~--lWd~~~~~~~~~~~~~h~~~v~~v~~ 148 (304)
T 2ynn_A 80 RVFNYNTGEKVVDFEA---HPDYI------RSIAVHPTKPYVLSGSDDLTVK--LWNWENNWALEQTFEGHEHFVMCVAF 148 (304)
T ss_dssp EEEETTTCCEEEEEEC---CSSCE------EEEEECSSSSEEEEEETTSCEE--EEEGGGTTEEEEEECCCCSCEEEEEE
T ss_pred EEEECCCCcEEEEEeC---CCCcE------EEEEEcCCCCEEEEECCCCeEE--EEECCCCcchhhhhcccCCcEEEEEE
Confidence 6773 4444333321 22223 7899999999999887776543 3332111 111122334444455667
Q ss_pred eCCcc-cccCCccCceEEEEEccCCceE-eccCCCCCCccceEEEee--CCCCCccEEEEEeecCCceeeeeeeeccCCc
Q 003886 260 EEDWG-ETYAGKRQPSLFVININSGEVQ-AVKGIPKSLSVGQVVWAP--LNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 335 (789)
Q Consensus 260 ~~d~g-~~~~~~~~~~l~v~d~~~g~~~-~l~~~~~~~~~~~~~wSP--Dg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~ 335 (789)
.|+-+ ...++..+..|.+||+.+++.. .+. ......+..+.|+| |++. |+..+ .+.
T Consensus 149 ~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~----l~s~s---------------~D~ 208 (304)
T 2ynn_A 149 NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYPLPDKPY----MITAS---------------DDL 208 (304)
T ss_dssp CTTCTTEEEEEETTSEEEEEETTCSSCSEEEE-CCCTTCEEEEEECCSTTCCE----EEEEE---------------TTS
T ss_pred CCCCCCEEEEEeCCCeEEEEECCCCCccceec-cCCcCcEEEEEEEEcCCCCE----EEEEc---------------CCC
Confidence 77433 3455666789999999776532 221 22233556778887 5554 55444 233
Q ss_pred ceEEEecccccchhhhhhhhcCCCCCC-CeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 336 ALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 336 ~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
.|.++|+ .++ ....+..+...+....|+|+|+.|+..+.+. .|.+||..++
T Consensus 209 ~i~iWd~-----------------~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg-----------~i~iWd~~~~ 260 (304)
T 2ynn_A 209 TIKIWDY-----------------QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG-----------TLKIWNSSTY 260 (304)
T ss_dssp EEEEEET-----------------TTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTS-----------CEEEEETTTC
T ss_pred eEEEEeC-----------------CCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCC-----------eEEEEECCCC
Confidence 6888887 333 3556777777788899999999888777553 5899998775
Q ss_pred CC
Q 003886 415 GN 416 (789)
Q Consensus 415 ~~ 416 (789)
+.
T Consensus 261 ~~ 262 (304)
T 2ynn_A 261 KV 262 (304)
T ss_dssp CE
T ss_pred ce
Confidence 43
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.2e-08 Score=106.60 Aligned_cols=258 Identities=10% Similarity=0.027 Sum_probs=142.3
Q ss_pred EEEeCCCCCeEEEEecC------CCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 158 AVVPSPSGSKLLVVRNP------ENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 158 ~~~~SPdG~~la~~~~~------~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
.+++||||++|++.... +.....+..++ ...+....+.+....+.. ....-..+.|||||++|++.....
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~--~g~~p~~~~~spDG~~l~v~n~~~- 146 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD--VGPYSWMNANTPNNADLLFFQFAA- 146 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccc--cCCCccceEECCCCCEEEEEecCC-
Confidence 88999999999876531 11123455555 445555555443110000 000114789999999988764321
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEec-cCCCCCCccceEEEeeCCCCC
Q 003886 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGL 309 (789)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l-~~~~~~~~~~~~~wSPDg~~~ 309 (789)
...|.++| +++++... ...+ +.+...|+++.
T Consensus 147 -----------------------------------------~~~v~viD-~t~~~~~~~i~~~-----~~~~~~~~~~~- 178 (373)
T 2mad_H 147 -----------------------------------------GPAVGLVV-QGGSSDDQLLSSP-----TCYHIHPGAPS- 178 (373)
T ss_pred -----------------------------------------CCeEEEEE-CCCCEEeEEcCCC-----ceEEEEeCCCc-
Confidence 25799999 99886533 2122 12556788876
Q ss_pred ccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeec------CCCCCccCcceecCCC
Q 003886 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL------TESISSAFFPRFSPDG 383 (789)
Q Consensus 310 ~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L------t~~~~~~~~p~~SpDG 383 (789)
.++.... ...+..++. . +...... .........|.+++|+
T Consensus 179 ---~~~~~~~--------------dg~~~~vd~-~----------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 224 (373)
T 2mad_H 179 ---TFYLLCA--------------QGGLAKTDH-A----------------GGAAGAGLVGAMLTAAQNLLTQPAQANKS 224 (373)
T ss_pred ---eEEEEcC--------------CCCEEEEEC-C----------------CcEEEEEeccccccCCcceeecceeEecC
Confidence 5443321 124555554 1 1111011 1111123457889999
Q ss_pred CEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeecc-CC-CCCccccccCCCCCccccCCCEEEEE
Q 003886 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA-EG-DCFPGLYSSSILSNPWLSDGCTMLLS 461 (789)
Q Consensus 384 ~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~-~~-~~f~g~~~~~~~~~~ws~Dg~~l~~~ 461 (789)
..++|.+.. .+++++|+.++....+. . ..+.... .. ...|+ ....+.+++|++++|+.
T Consensus 225 ~~~~~~~~~-----------~~v~vid~~~~~~~v~~-~----~~~~~~~~~~~~~~p~----g~~~~~~s~d~~~lyV~ 284 (373)
T 2mad_H 225 GRIVWPVYS-----------GKILQADISAAGATNKA-P----IDALSGGRKADTWRPG----GWQQVAYLKSSDGIYLL 284 (373)
T ss_pred CEEEEEcCC-----------ceEEEEeccCCcceEee-e----eeecCCcccccceecC----ceEeEEECCCCCEEEEE
Confidence 998888732 26999998765432111 0 0000000 00 00110 11125678999999887
Q ss_pred EEeC-------CeEEEEEEECCCCcE-EEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 462 SIWG-------SSQVIISVNVSSGEL-LRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 462 ~~~~-------~~~~l~~~dl~tg~~-~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
.... ....|+.+|++++++ .++.-.. ......+++||+.++|+..... ..+.++|..+.
T Consensus 285 ~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~~--~~V~ViD~~t~ 351 (373)
T 2mad_H 285 TSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAGT--EVLHIYDAGAG 351 (373)
T ss_pred eccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECCCCCeEEEEEcCCC--CeEEEEECCCC
Confidence 6432 235799999999887 4554333 3445689999996666654222 35888887654
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.18 E-value=8.5e-10 Score=120.50 Aligned_cols=183 Identities=13% Similarity=0.127 Sum_probs=113.3
Q ss_pred ceEEEEEccCCc--------eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEeccc
Q 003886 273 PSLFVININSGE--------VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 344 (789)
Q Consensus 273 ~~l~v~d~~~g~--------~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 344 (789)
..|.+||+.++. ...+ ......+..+.|+|||+. +++++. .+..|+++|+
T Consensus 104 g~v~vw~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~----~l~s~~--------------~dg~i~iwd~-- 161 (402)
T 2aq5_A 104 CTVMVWEIPDGGLVLPLREPVITL--EGHTKRVGIVAWHPTAQN----VLLSAG--------------CDNVILVWDV-- 161 (402)
T ss_dssp SEEEEEECCTTCCSSCBCSCSEEE--ECCSSCEEEEEECSSBTT----EEEEEE--------------TTSCEEEEET--
T ss_pred CeEEEEEccCCCCccccCCceEEe--cCCCCeEEEEEECcCCCC----EEEEEc--------------CCCEEEEEEC--
Confidence 568889988763 2333 223446788999999976 666653 2236888898
Q ss_pred ccchhhhhhhhcCCCCCCC-eeec--CCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCccc
Q 003886 345 YKSEASELELKESSSEDLP-VVNL--TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE 421 (789)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~-~~~L--t~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~ 421 (789)
.+++ ...+ ..+...+...+|+|||+.|+..+.+. .|++||+.++....
T Consensus 162 ---------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------~i~iwd~~~~~~~~--- 212 (402)
T 2aq5_A 162 ---------------GTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK-----------RVRVIEPRKGTVVA--- 212 (402)
T ss_dssp ---------------TTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTS-----------EEEEEETTTTEEEE---
T ss_pred ---------------CCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCC-----------cEEEEeCCCCceee---
Confidence 3333 4455 55667788999999999998877543 59999987744321
Q ss_pred ceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE--EEec-CCCCCceeEEeeec
Q 003886 422 KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL--LRIT-PAESNFSWSLLTLD 498 (789)
Q Consensus 422 ~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~--~~lt-~~~~~~~~~~~s~d 498 (789)
. ....... ..+..+.|+|||+.|+..........|..+|+.+++. .... ..........++++
T Consensus 213 ------~-~~~~~~~-------~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~ 278 (402)
T 2aq5_A 213 ------E-KDRPHEG-------TRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPD 278 (402)
T ss_dssp ------E-EECSSCS-------SSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETT
T ss_pred ------e-eccCCCC-------CcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCC
Confidence 0 0000000 1135678999987554332223455677778877553 2222 22233455688999
Q ss_pred CCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 499 GDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 499 g~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
++.++.+.+... .|.+.++..+
T Consensus 279 ~~~l~~~g~~dg---~i~i~d~~~~ 300 (402)
T 2aq5_A 279 TNIVYLCGKGDS---SIRYFEITSE 300 (402)
T ss_dssp TTEEEEEETTCS---CEEEEEECSS
T ss_pred CCEEEEEEcCCC---eEEEEEecCC
Confidence 998877765443 3777776543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.18 E-value=3.3e-10 Score=123.07 Aligned_cols=284 Identities=10% Similarity=0.020 Sum_probs=156.5
Q ss_pred ceeEEEEEEeecCCC-----CccceeecCCcceecccEEEEeCCC----C---CeEEEEecCCCCCCeEEEEecCCce--
Q 003886 125 RKKFMLSTVISKENE-----NSVTFQWAPFPVEMTGASAVVPSPS----G---SKLLVVRNPENESPIQFELWSQSQL-- 190 (789)
Q Consensus 125 ~~~~l~~~~~~~~~~-----~~~~lt~~~~~~~~~~~~~~~~SPd----G---~~la~~~~~~~~~~~~~~i~~~~~~-- 190 (789)
..+.+.++++..... ....+.... ..+....|+|+ | +.|+.....+ .-.+|.+. .++.
T Consensus 34 ~dg~i~iw~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~g~~~~~l~s~~~dg--~i~iw~~~-~~~~~~ 105 (397)
T 1sq9_A 34 GDGYLKVWDNKLLDNENPKDKSYSHFVHK-----SGLHHVDVLQAIERDAFELCLVATTSFSG--DLLFYRIT-REDETK 105 (397)
T ss_dssp TTSEEEEEESBCCTTCCGGGGEEEEECCT-----TCEEEEEEEEEEETTTEEEEEEEEEETTS--CEEEEEEE-ECTTTC
T ss_pred CCCEEEEEECCCcccccCCCcceEEecCC-----CcEEEEEEecccccCCccccEEEEEcCCC--CEEEEEcc-CCcccc
Confidence 345677777644321 112222222 45788999999 9 9988876543 22233332 2332
Q ss_pred ---eEEEecCCCc--cccccCCCcccceeec----CCCCE-EEEEeecCCCCCCCccCCC------CCCCC-----CC--
Q 003886 191 ---EKEFHVPQTV--HGSVYADGWFEGISWN----SDETL-IAYVAEEPSPSKPTFSLGS------TKGGS-----SD-- 247 (789)
Q Consensus 191 ---~~~~~~~~~~--~g~v~~d~~~~~~~wS----pDg~~-la~~~~~~~~~~~~~~~~~------~~~~~-----~~-- 247 (789)
.+.+...... .+.| ..+.|+ ||++. |+..+.+.... .|+... ..... ..
T Consensus 106 ~~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~~~~~~l~~~~~dg~i~--iwd~~~~~~~~~~~~~~~~~~~~~~~ 177 (397)
T 1sq9_A 106 KVIFEKLDLLDSDMKKHSF------WALKWGASNDRLLSHRLVATDVKGTTY--IWKFHPFADESNSLTLNWSPTLELQG 177 (397)
T ss_dssp CEEEEEECCSCTTGGGSCE------EEEEEECCC----CEEEEEEETTSCEE--EEEEESSSSHHHHTTTCCCCEEEEEE
T ss_pred cccceeecccccccCCCcE------EEEEEeeccCCCCceEEEEEeCCCcEE--EEeCCccccccccceeeccCcceeee
Confidence 2222211000 1233 789999 99999 87776654322 233222 11111 11
Q ss_pred -----cCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCC-------CCccceEEEeeCCCCCccEEEE
Q 003886 248 -----KDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-------SLSVGQVVWAPLNEGLHQYLVF 315 (789)
Q Consensus 248 -----~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~-------~~~~~~~~wSPDg~~~~~~l~f 315 (789)
..+........|.++. ..+++..+..|.+||+.+++.... ... ...+..++|+|||+. |+.
T Consensus 178 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~h~~~~~~i~~i~~~~~~~~----l~~ 250 (397)
T 1sq9_A 178 TVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYN--FESQHSMINNSNSIRSVKFSPQGSL----LAI 250 (397)
T ss_dssp EECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEE--EECCC---CCCCCEEEEEECSSTTE----EEE
T ss_pred eeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEE--EeccccccccCCccceEEECCCCCE----EEE
Confidence 1234445566788886 666666788999999998876544 222 556789999999997 766
Q ss_pred EeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCC-------------CCCccCcceecCC
Q 003886 316 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-------------SISSAFFPRFSPD 382 (789)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~-------------~~~~~~~p~~SpD 382 (789)
.+... ....|+++|+. .......+.. +...+....|+||
T Consensus 251 ~~~d~------------~~g~i~i~d~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 302 (397)
T 1sq9_A 251 AHDSN------------SFGCITLYETE----------------FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 302 (397)
T ss_dssp EEEET------------TEEEEEEEETT----------------TCCEEEEECBC--------CCBSBSSCEEEEEECSS
T ss_pred EecCC------------CCceEEEEECC----------------CCcccceeccCcccccccccccccCCcEEEEEECCC
Confidence 55210 01368888872 2223444544 5567888999999
Q ss_pred CCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCcc------ccccCCCCCccccCCC
Q 003886 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG------LYSSSILSNPWLSDGC 456 (789)
Q Consensus 383 G~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g------~~~~~~~~~~ws~Dg~ 456 (789)
|++|+..+.+ ..|++||+.+++........ .... ....+ ...| +....+..+.|+|||+
T Consensus 303 ~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~--~~~~-~~~~~-~~~g~~~~~~~~~~~v~~~~~~~~g~ 367 (397)
T 1sq9_A 303 GETLCSAGWD-----------GKLRFWDVKTKERITTLNMH--CDDI-EIEED-ILAVDEHGDSLAEPGVFDVKFLKKGW 367 (397)
T ss_dssp SSEEEEEETT-----------SEEEEEETTTTEEEEEEECC--GGGC-SSGGG-CCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred CCEEEEEeCC-----------CeEEEEEcCCCceeEEEecc--cCcc-cchhh-hhccccccccccCCceeEEEeccccc
Confidence 9998877644 26999998775432110000 0000 00000 0000 0022456788999984
Q ss_pred ---------EEEEEEEeCCeEEEEEEE
Q 003886 457 ---------TMLLSSIWGSSQVIISVN 474 (789)
Q Consensus 457 ---------~l~~~~~~~~~~~l~~~d 474 (789)
.+++++..++...+|.++
T Consensus 368 ~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 368 RSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp SBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred cccccccccceEEEecCCCcEEEEEcC
Confidence 366777777777777654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-09 Score=111.69 Aligned_cols=237 Identities=12% Similarity=0.164 Sum_probs=138.3
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec-CC---ceeEEEecCCCccccccCCCcccceeecCC--CCEEEEEee
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS-QS---QLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAE 227 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~---~~~~~~~~~~~~~g~v~~d~~~~~~~wSpD--g~~la~~~~ 227 (789)
..+...+|||||++||..+.++ ...+|+ .+ +....+. +..+.| ..+.|+|+ |+.||..+.
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~-----~v~iw~~~~~~~~~~~~l~---gH~~~V------~~v~~s~~~~g~~l~s~s~ 75 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDK-----TIKIFEVEGETHKLIDTLT---GHEGPV------WRVDWAHPKFGTILASCSY 75 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEEBCSSCBCCCEEEC---CCSSCE------EEEEECCGGGCSEEEEEET
T ss_pred CceEEEEECCCCCEEEEEeCCC-----EEEEEecCCCCcEEEEEEc---cccCCe------EEEEecCCCcCCEEEEEcC
Confidence 3578899999999999877553 355662 21 2222221 222333 78999874 888877654
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC-CCCCCccceEEEeeC-
Q 003886 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPL- 305 (789)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~-~~~~~~~~~~~wSPD- 305 (789)
+ ..|.+||+.+++...+.. ......+..++|+|+
T Consensus 76 D--------------------------------------------~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 111 (297)
T 2pm7_B 76 D--------------------------------------------GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHE 111 (297)
T ss_dssp T--------------------------------------------TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGG
T ss_pred C--------------------------------------------CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCC
Confidence 3 568899998875322210 223446789999998
Q ss_pred -CCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCC--
Q 003886 306 -NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPD-- 382 (789)
Q Consensus 306 -g~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpD-- 382 (789)
|+. |+..+ .+..|.++|+... .......+..+...+...+|+|+
T Consensus 112 ~g~~----l~s~s---------------~d~~v~~wd~~~~--------------~~~~~~~~~~h~~~v~~~~~~p~~~ 158 (297)
T 2pm7_B 112 YGPM----LLVAS---------------SDGKVSVVEFKEN--------------GTTSPIIIDAHAIGVNSASWAPATI 158 (297)
T ss_dssp GCSE----EEEEE---------------TTSEEEEEEBCSS--------------SCBCCEEEECCSSCEEEEEECCCC-
T ss_pred CCcE----EEEEE---------------CCCcEEEEEecCC--------------CceeeeeeecccCccceEeecCCcc
Confidence 665 55544 2235777777210 01113345556666788899997
Q ss_pred -----------CCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCcc
Q 003886 383 -----------GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 451 (789)
Q Consensus 383 -----------G~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~w 451 (789)
|+.|+..+.+. .|.+||+.++.... ....... | ....+..+.|
T Consensus 159 ~~~~~~~~~~~~~~l~sgs~D~-----------~v~lwd~~~~~~~~------~~~~~l~--------~-H~~~V~~v~~ 212 (297)
T 2pm7_B 159 EEDGEHNGTKESRKFVTGGADN-----------LVKIWKYNSDAQTY------VLESTLE--------G-HSDWVRDVAW 212 (297)
T ss_dssp -----------CCEEEEEETTS-----------CEEEEEEETTTTEE------EEEEEEC--------C-CSSCEEEEEE
T ss_pred cccccCCCCCCcceEEEEcCCC-----------cEEEEEEcCCCceE------EEEEEec--------C-CCCceEEEEE
Confidence 56777666443 48888886644210 0010000 0 1113456789
Q ss_pred ccCC--CEEEEEEEeCCeEEEEEEECCCCcE-EEec--CC-CCCceeEEeeecCCEEEEEEe
Q 003886 452 LSDG--CTMLLSSIWGSSQVIISVNVSSGEL-LRIT--PA-ESNFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 452 s~Dg--~~l~~~~~~~~~~~l~~~dl~tg~~-~~lt--~~-~~~~~~~~~s~dg~~l~~~~s 507 (789)
+|++ ..+++++..++...||.++...+.. ..+. .. ...+....|+++|+.|+....
T Consensus 213 sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~ 274 (297)
T 2pm7_B 213 SPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 274 (297)
T ss_dssp CCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET
T ss_pred CCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC
Confidence 9996 4566777888888888665432322 2222 11 223444678999887765544
|
| >4i19_A Epoxide hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.15A {Streptomyces carzinostaticus subsp} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.9e-10 Score=122.27 Aligned_cols=121 Identities=16% Similarity=0.202 Sum_probs=94.2
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHC---------CcEEEEEcCCCCCCCCchhhc
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV---------GYSLLIVNYRGSLGFGEEALQ 641 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~---------Gy~V~~~d~rGs~G~G~~~~~ 641 (789)
-+|..++...+.+. ....|.||++||.+++ ...|......|++. ||.|+++|++| +|.+...
T Consensus 75 i~g~~i~~~~~~~~----~~~~~plll~HG~~~s--~~~~~~~~~~L~~~~~~~~~~~~~~~vi~~dl~G---~G~S~~~ 145 (388)
T 4i19_A 75 IDGATIHFLHVRSP----EPDATPMVITHGWPGT--PVEFLDIIGPLTDPRAHGGDPADAFHLVIPSLPG---FGLSGPL 145 (388)
T ss_dssp ETTEEEEEEEECCS----STTCEEEEEECCTTCC--GGGGHHHHHHHHCGGGGTSCGGGCEEEEEECCTT---SGGGCCC
T ss_pred ECCeEEEEEEccCC----CCCCCeEEEECCCCCC--HHHHHHHHHHHhCcccccCCCCCCeEEEEEcCCC---CCCCCCC
Confidence 37889987777653 3356789999998875 56777778888776 99999999998 6655422
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 642 SLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 642 ~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
.. ....++++.+.+..++++ ++.+++.++|||+||++++.++.++|++++++|+.+|..
T Consensus 146 ~~----~~~~~~~~a~~~~~l~~~--lg~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 204 (388)
T 4i19_A 146 KS----AGWELGRIAMAWSKLMAS--LGYERYIAQGGDIGAFTSLLLGAIDPSHLAGIHVNLLQT 204 (388)
T ss_dssp SS----CCCCHHHHHHHHHHHHHH--TTCSSEEEEESTHHHHHHHHHHHHCGGGEEEEEESSCCC
T ss_pred CC----CCCCHHHHHHHHHHHHHH--cCCCcEEEEeccHHHHHHHHHHHhChhhceEEEEecCCC
Confidence 11 133577888877777776 455789999999999999999999999999999998643
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=6.1e-08 Score=105.12 Aligned_cols=259 Identities=13% Similarity=0.078 Sum_probs=142.9
Q ss_pred cccEEEEeCC-CCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCC---CEEEEEee
Q 003886 154 TGASAVVPSP-SGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDE---TLIAYVAE 227 (789)
Q Consensus 154 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg---~~la~~~~ 227 (789)
..+...+|+| +++.|+.....+ .+.+| ..++........... ..+.|+|++ ..|+....
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~-----~i~iwd~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 164 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDK-----TLKVWDTNTLQTADVFNFEETV----------YSHHMSPVSTKHCLVAVGTR 164 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTS-----EEEEEETTTTEEEEEEECSSCE----------EEEEECSSCSSCCEEEEEES
T ss_pred CcEEEEEEccCCCcEEEEEeCCC-----eEEEeeCCCCccceeccCCCce----------eeeEeecCCCCCcEEEEEcC
Confidence 4588899999 666777665443 46667 345555555443333 677888854 36665432
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003886 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (789)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (789)
...|.+||+.+++..... ......+..++|+|+++
T Consensus 165 --------------------------------------------~~~v~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 199 (408)
T 4a11_B 165 --------------------------------------------GPKVQLCDLKSGSCSHIL-QGHRQEILAVSWSPRYD 199 (408)
T ss_dssp --------------------------------------------SSSEEEEESSSSCCCEEE-CCCCSCEEEEEECSSCT
T ss_pred --------------------------------------------CCeEEEEeCCCcceeeee-cCCCCcEEEEEECCCCC
Confidence 256899999887654331 23344678899999999
Q ss_pred CCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEE
Q 003886 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 308 ~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la 387 (789)
. +++++.. ...|+++|+......-.................+..+...+...+|+|||++|+
T Consensus 200 ~----ll~~~~~--------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 261 (408)
T 4a11_B 200 Y----ILATASA--------------DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLL 261 (408)
T ss_dssp T----EEEEEET--------------TSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEE
T ss_pred c----EEEEEcC--------------CCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEE
Confidence 8 7777632 235777776311000000000000000001111234455678899999999998
Q ss_pred EEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccc-cCCCEEEEEEEeCC
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWGS 466 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws-~Dg~~l~~~~~~~~ 466 (789)
..+.+. .|.+||+.++........... . ... ......+. ..+..+++. ..++
T Consensus 262 ~~~~dg-----------~i~vwd~~~~~~~~~~~~~~~--~-------~~~------~~~~~~~~~~~~~~~~~~-~~~~ 314 (408)
T 4a11_B 262 TVGTDN-----------RMRLWNSSNGENTLVNYGKVC--N-------NSK------KGLKFTVSCGCSSEFVFV-PYGS 314 (408)
T ss_dssp EEETTS-----------CEEEEETTTCCBCCCCCCCCC--C-------CCS------SCCCCEECCSSSSCEEEE-EETT
T ss_pred EecCCC-----------eEEEEECCCCccceecccccc--c-------ccc------ccceeEEecCCCceEEEE-ecCC
Confidence 777543 599999987665322111100 0 000 00111222 223334444 3444
Q ss_pred eEEEEEEECCCCcEEEecCCC-CCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 467 SQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 467 ~~~l~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
.|..+|+.+++.......+ ..+....|+++++.|+.... .. .|.+.++...
T Consensus 315 --~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-dg---~i~iw~~~~~ 366 (408)
T 4a11_B 315 --TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSR-DC---NILAWVPSLY 366 (408)
T ss_dssp --EEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEET-TS---CEEEEEECC-
T ss_pred --EEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECC-CC---eEEEEeCCCC
Confidence 5666788888776655433 34555688999887664443 32 3666776543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.6e-09 Score=115.45 Aligned_cols=238 Identities=12% Similarity=0.100 Sum_probs=150.7
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 157 SAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
....||+ +.++.....+ .+.+| ..++..+..... ..+.| ..++|+|||+.|+..+.+
T Consensus 97 ~~~~~s~--~~l~~~~~d~-----~v~lw~~~~~~~~~~~~~~--~~~~v------~~v~~s~~~~~l~~~~~d------ 155 (401)
T 4aez_A 97 NLLDWSN--LNVVAVALER-----NVYVWNADSGSVSALAETD--ESTYV------ASVKWSHDGSFLSVGLGN------ 155 (401)
T ss_dssp BCEEECT--TSEEEEEETT-----EEEEEETTTCCEEEEEECC--TTCCE------EEEEECTTSSEEEEEETT------
T ss_pred EEEeecC--CCEEEEECCC-----eEEEeeCCCCcEeEeeecC--CCCCE------EEEEECCCCCEEEEECCC------
Confidence 3466775 4455554433 35566 455555555442 11222 789999999998886432
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~ 314 (789)
..|.+||+.+++..... ......+..+.| +++. |+
T Consensus 156 --------------------------------------g~i~iwd~~~~~~~~~~-~~~~~~v~~~~~--~~~~----l~ 190 (401)
T 4aez_A 156 --------------------------------------GLVDIYDVESQTKLRTM-AGHQARVGCLSW--NRHV----LS 190 (401)
T ss_dssp --------------------------------------SCEEEEETTTCCEEEEE-CCCSSCEEEEEE--ETTE----EE
T ss_pred --------------------------------------CeEEEEECcCCeEEEEe-cCCCCceEEEEE--CCCE----EE
Confidence 46889999888754432 233446677888 4454 44
Q ss_pred EEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCC
Q 003886 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 394 (789)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~ 394 (789)
..+ ....|+++|+.. .......+..+...+....|+|||+.|+..+.+.
T Consensus 191 ~~~---------------~dg~i~i~d~~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~- 239 (401)
T 4aez_A 191 SGS---------------RSGAIHHHDVRI---------------ANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN- 239 (401)
T ss_dssp EEE---------------TTSEEEEEETTS---------------SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-
T ss_pred EEc---------------CCCCEEEEeccc---------------CcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC-
Confidence 444 234688888721 2233556666777888999999999988877543
Q ss_pred CCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003886 395 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (789)
Q Consensus 395 ~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~d 474 (789)
.|++||+.++........ ....+..+.|+|++..+++++.......|..+|
T Consensus 240 ----------~v~iwd~~~~~~~~~~~~-------------------~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d 290 (401)
T 4aez_A 240 ----------VVQIWDARSSIPKFTKTN-------------------HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN 290 (401)
T ss_dssp ----------CEEEEETTCSSEEEEECC-------------------CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEE
T ss_pred ----------eEEEccCCCCCccEEecC-------------------CcceEEEEEECCCCCCEEEEecCCCCCEEEEEE
Confidence 599999876443210000 012356788999998887776532344577778
Q ss_pred CCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 475 VSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 475 l~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
+.+++...............++++++.++.+..... ..+.+.+...
T Consensus 291 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~d--g~i~v~~~~~ 336 (401)
T 4aez_A 291 AATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPD--NNLSIWSYSS 336 (401)
T ss_dssp TTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTT--CEEEEEEEET
T ss_pred CCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCC--CcEEEEecCC
Confidence 888887666555555666788999998877654332 2466666654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-08 Score=107.31 Aligned_cols=252 Identities=12% Similarity=0.041 Sum_probs=139.7
Q ss_pred cccEEEEeCCC----CCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecC-CCCEEEEEe
Q 003886 154 TGASAVVPSPS----GSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNS-DETLIAYVA 226 (789)
Q Consensus 154 ~~~~~~~~SPd----G~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSp-Dg~~la~~~ 226 (789)
..+...+|||+ |+.|+.....+ .+.+|+ .++....+.. ..+.| ..+.|+| |++.|+..+
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~~~~~---~~~~i------~~~~~~~~~~~~l~s~~ 135 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRG-----IIRIINPITMQCIKHYVG---HGNAI------NELKFHPRDPNLLLSVS 135 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTC-----EEEEECTTTCCEEEEEES---CCSCE------EEEEECSSCTTEEEEEE
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCC-----EEEEEEchhceEeeeecC---CCCcE------EEEEECCCCCCEEEEEe
Confidence 45788999999 66777766543 566773 4444444331 12222 7899999 888887754
Q ss_pred ecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC--CCCCCccceEEEee
Q 003886 227 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG--IPKSLSVGQVVWAP 304 (789)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~--~~~~~~~~~~~wSP 304 (789)
.+ ..|.+||+.+++...... ......+..+.|+|
T Consensus 136 ~d--------------------------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (366)
T 3k26_A 136 KD--------------------------------------------HALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 171 (366)
T ss_dssp TT--------------------------------------------SCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred CC--------------------------------------------CeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence 32 568999999887655410 12344678999999
Q ss_pred CCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhh----hhcC-CC-------CCCCeeecCCCCC
Q 003886 305 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELE----LKES-SS-------EDLPVVNLTESIS 372 (789)
Q Consensus 305 Dg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~----~~~~-~~-------~~~~~~~Lt~~~~ 372 (789)
||+. |+..+. ...|+++|+........... .++. .. .......+..+..
T Consensus 172 ~~~~----l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 172 LGEK----IMSCGM---------------DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp TSSE----EEEEET---------------TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred CCCE----EEEecC---------------CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 9997 766652 23677777732211000000 0000 00 0001111222455
Q ss_pred ccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCC--ccccee--eEEeeeeccCCCCCccccccCCCC
Q 003886 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS--SLEKIV--DVIPVVQCAEGDCFPGLYSSSILS 448 (789)
Q Consensus 373 ~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~--~t~~~~--~v~~~~~~~~~~~f~g~~~~~~~~ 448 (789)
.+...+|+ |+.|+..+.+ ..|.+||+.++.... +..... ........ ....+..
T Consensus 233 ~v~~~~~~--~~~l~~~~~d-----------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~ 290 (366)
T 3k26_A 233 YVDCVRWL--GDLILSKSCE-----------NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY---------SQCDIWY 290 (366)
T ss_dssp CCCEEEEE--TTEEEEECSS-----------SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC---------SSCCSSC
T ss_pred eEEEEEEc--CCEEEEEecC-----------CEEEEEeCCCccccccccccCCcchheeccccc---------cCCcEEE
Confidence 67788888 6777665543 358999987654321 111110 11111110 1123567
Q ss_pred CccccC--CCEEEEEEEeCCeEEEEEEECCCCc-----EEEecCC--CCCceeEEeeecCCEEEEEEe
Q 003886 449 NPWLSD--GCTMLLSSIWGSSQVIISVNVSSGE-----LLRITPA--ESNFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 449 ~~ws~D--g~~l~~~~~~~~~~~l~~~dl~tg~-----~~~lt~~--~~~~~~~~~s~dg~~l~~~~s 507 (789)
+.|+|| |+.| +++..++. |..+|+.+++ ...+... ...+....|+++++.|+....
T Consensus 291 ~~~s~~~~~~~l-~~~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 355 (366)
T 3k26_A 291 MRFSMDFWQKML-ALGNQVGK--LYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCD 355 (366)
T ss_dssp CCCEECTTSSEE-EEECTTSC--EEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred EEEcCCCCCcEE-EEEecCCc--EEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeC
Confidence 889999 8855 45555554 4455666664 2234433 234555688888887665543
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.14 E-value=7.1e-09 Score=109.66 Aligned_cols=288 Identities=12% Similarity=0.015 Sum_probs=152.2
Q ss_pred cccEEEEeCCC-CCeEEEEecCCCCCCeEEEEecCCc-eeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPS-GSKLLVVRNPENESPIQFELWSQSQ-LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPd-G~~la~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
+.+...+|||+ |+.||..+.+ +.-.+|.+..... .......-.+..+.| ..+.|+|||+.|+..+.+...
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D--~~i~vWd~~~~~~~~~~~~~~l~~h~~~V------~~~~~s~dg~~l~s~~~d~~i 110 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRD--KTIIMWKLTRDETNYGIPQRALRGHSHFV------SDVVISSDGQFALSGSWDGTL 110 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETT--SCEEEEEECCSSSCSEEEEEEECCCSSCE------EEEEECTTSSEEEEEETTSEE
T ss_pred CCEEEEEEeCCCCCEEEEEcCC--CeEEEEECCCCCcccceeeEEEeCCCCCE------EEEEECCCCCEEEEEcccccc
Confidence 45889999998 4667666543 2222333332111 111111111222233 789999999999887765432
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
. .|......................+.++....+++..+..+.+||+.+..............+..+.|++++..
T Consensus 111 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--- 185 (340)
T 4aow_A 111 R--LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN--- 185 (340)
T ss_dssp E--EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS---
T ss_pred e--EEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC---
Confidence 1 11111110000000111111122234443333444456788899987765544421222345678899999876
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEec
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
.++++-. .+..|.++|+. .......+..+...+...+|||||+.|+..+.
T Consensus 186 -~~~~s~~-------------~d~~i~i~d~~----------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~ 235 (340)
T 4aow_A 186 -PIIVSCG-------------WDKLVKVWNLA----------------NCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK 235 (340)
T ss_dssp -CEEEEEE-------------TTSCEEEEETT----------------TTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred -cEEEEEc-------------CCCEEEEEECC----------------CCceeeEecCCCCcEEEEEECCCCCEEEEEeC
Confidence 4443311 22368888872 22334556666777888999999999887665
Q ss_pred CCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 392 ~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
+. .|.+||+.+.......... ..+....|+|++. ++.. ..++. |.
T Consensus 236 Dg-----------~i~iwd~~~~~~~~~~~~~--------------------~~v~~~~~~~~~~-~~~~-~~d~~--i~ 280 (340)
T 4aow_A 236 DG-----------QAMLWDLNEGKHLYTLDGG--------------------DIINALCFSPNRY-WLCA-ATGPS--IK 280 (340)
T ss_dssp TC-----------EEEEEETTTTEEEEEEECS--------------------SCEEEEEECSSSS-EEEE-EETTE--EE
T ss_pred CC-----------eEEEEEeccCceeeeecCC--------------------ceEEeeecCCCCc-eeec-cCCCE--EE
Confidence 43 5899998764432110000 0133557888876 4333 34444 45
Q ss_pred EEECCCCcEEEecC----------CCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 472 SVNVSSGELLRITP----------AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 472 ~~dl~tg~~~~lt~----------~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
.+|+.++....-.. ....+....|+++|+.|+... .... |.+.++.++
T Consensus 281 iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs-~Dg~---v~iW~~~tG 338 (340)
T 4aow_A 281 IWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY-TDNL---VRVWQVTIG 338 (340)
T ss_dssp EEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEE-TTSC---EEEEEEEC-
T ss_pred EEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEe-CCCE---EEEEeCCCc
Confidence 55776665433221 112334457888888766543 3332 666666554
|
| >1r3d_A Conserved hypothetical protein VC1974; structural genomics, hydrolase, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP: c.69.1.35 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-10 Score=118.28 Aligned_cols=104 Identities=20% Similarity=0.285 Sum_probs=75.0
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
..|.||++||.+++ ...|......|++.||.|+++|+|| +|.+.... ..+++++.+.+..+++.-.++.
T Consensus 15 ~~~~vvllHG~~~~--~~~w~~~~~~L~~~~~~vi~~Dl~G---hG~S~~~~------~~~~~~~a~~l~~~l~~l~~~~ 83 (264)
T 1r3d_A 15 RTPLVVLVHGLLGS--GADWQPVLSHLARTQCAALTLDLPG---HGTNPERH------CDNFAEAVEMIEQTVQAHVTSE 83 (264)
T ss_dssp TBCEEEEECCTTCC--GGGGHHHHHHHTTSSCEEEEECCTT---CSSCC-------------CHHHHHHHHHHHTTCCTT
T ss_pred CCCcEEEEcCCCCC--HHHHHHHHHHhcccCceEEEecCCC---CCCCCCCC------ccCHHHHHHHHHHHHHHhCcCC
Confidence 34889999997664 5678888888876899999999998 55543211 1234555555555555422222
Q ss_pred ccEEEEEcCccHHHHHH---HHHhCCCceeEEEEeCCc
Q 003886 671 SKVTVVGGSHGGFLTTH---LIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~---~~~~~p~~~~a~v~~~pv 705 (789)
.++.|+||||||.+++. ++.++|++++++|+.++.
T Consensus 84 ~p~~lvGhSmGG~va~~~~~~a~~~p~~v~~lvl~~~~ 121 (264)
T 1r3d_A 84 VPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAIIEGGH 121 (264)
T ss_dssp SEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEEEESCC
T ss_pred CceEEEEECHhHHHHHHHHHHHhhCccccceEEEecCC
Confidence 23999999999999999 878899999999998764
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-08 Score=107.84 Aligned_cols=277 Identities=6% Similarity=-0.104 Sum_probs=152.6
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCC--ccceeecCCcceecccEEEEeCCCCC-eEEEEecCCCCCC
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENEN--SVTFQWAPFPVEMTGASAVVPSPSGS-KLLVVRNPENESP 179 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~lt~~~~~~~~~~~~~~~~SPdG~-~la~~~~~~~~~~ 179 (789)
.++|||+.++... ....+.++++...... ...+.... ..+...+|+|+|+ +|+.....+
T Consensus 18 ~~s~~~~~l~~~~---------~d~~v~iw~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~~~dg---- 79 (342)
T 1yfq_A 18 KIIPSKSLLLITS---------WDGSLTVYKFDIQAKNVDLLQSLRYK-----HPLLCCNFIDNTDLQIYVGTVQG---- 79 (342)
T ss_dssp EEEGGGTEEEEEE---------TTSEEEEEEEETTTTEEEEEEEEECS-----SCEEEEEEEESSSEEEEEEETTS----
T ss_pred EEcCCCCEEEEEc---------CCCeEEEEEeCCCCccccceeeeecC-----CceEEEEECCCCCcEEEEEcCCC----
Confidence 3468888776542 2346666666443211 22222222 4588899999999 888776543
Q ss_pred eEEEEe-c-CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcc
Q 003886 180 IQFELW-S-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 257 (789)
Q Consensus 180 ~~~~i~-~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (789)
.+.+| . .......+.. ....+.| ..+.|+| ++.|+..+.+
T Consensus 80 -~i~~wd~~~~~~~~~~~~-~~~~~~v------~~l~~~~-~~~l~s~~~d----------------------------- 121 (342)
T 1yfq_A 80 -EILKVDLIGSPSFQALTN-NEANLGI------CRICKYG-DDKLIAASWD----------------------------- 121 (342)
T ss_dssp -CEEEECSSSSSSEEECBS-CCCCSCE------EEEEEET-TTEEEEEETT-----------------------------
T ss_pred -eEEEEEeccCCceEeccc-cCCCCce------EEEEeCC-CCEEEEEcCC-----------------------------
Confidence 35556 3 3322222111 0022223 7899999 8888775432
Q ss_pred eeeCCcccccCCccCceEEEEEccC---------CceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeee
Q 003886 258 DWEEDWGETYAGKRQPSLFVININS---------GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK 328 (789)
Q Consensus 258 ~~~~d~g~~~~~~~~~~l~v~d~~~---------g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~ 328 (789)
..|.+||+.+ ++.... ......+..+.|+|++ |+..+
T Consensus 122 ---------------~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~------l~~~~----------- 167 (342)
T 1yfq_A 122 ---------------GLIEVIDPRNYGDGVIAVKNLNSNN--TKVKNKIFTMDTNSSR------LIVGM----------- 167 (342)
T ss_dssp ---------------SEEEEECHHHHTTBCEEEEESCSSS--SSSCCCEEEEEECSSE------EEEEE-----------
T ss_pred ---------------CeEEEEcccccccccccccCCeeeE--EeeCCceEEEEecCCc------EEEEe-----------
Confidence 5688888876 543333 2344467788999875 34333
Q ss_pred eeccCCcceEEEecccccchhhhhhhhcCCCCC-CC---eeecCCCCCccCcceecC-CCCEEEEEecCCCCCCCCcccc
Q 003886 329 YCYNRPCALYAVRVSLYKSEASELELKESSSED-LP---VVNLTESISSAFFPRFSP-DGKFLVFLSAKSSVDSGAHSAT 403 (789)
Q Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~---~~~Lt~~~~~~~~p~~Sp-DG~~la~~s~~~~~~~g~~~~~ 403 (789)
....|+++|+ .+ +. ..........+...+|+| ||+.|+..+.+.
T Consensus 168 ----~d~~i~i~d~-----------------~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg---------- 216 (342)
T 1yfq_A 168 ----NNSQVQWFRL-----------------PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG---------- 216 (342)
T ss_dssp ----STTEEEEEES-----------------SCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS----------
T ss_pred ----CCCeEEEEEC-----------------CccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC----------
Confidence 2236888887 32 21 223334455678899999 999888777542
Q ss_pred ceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003886 404 DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (789)
Q Consensus 404 ~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~l 483 (789)
.+.+|++..++.......... ........... -....+..+.|+||++.| +++..++. |..+|+.+++....
T Consensus 217 -~i~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l-~~~~~dg~--i~vwd~~~~~~~~~ 288 (342)
T 1yfq_A 217 -RVAVEFFDDQGDDYNSSKRFA-FRCHRLNLKDT---NLAYPVNSIEFSPRHKFL-YTAGSDGI--ISCWNLQTRKKIKN 288 (342)
T ss_dssp -EEEEEECCTTCCSTTCTTCEE-EECCCCCTTCC---SSCCCEEEEEECTTTCCE-EEEETTSC--EEEEETTTTEEEEE
T ss_pred -cEEEEEEcCCCccccccccee-eeccccccccc---ccceeEEEEEEcCCCCEE-EEecCCce--EEEEcCccHhHhhh
Confidence 578888776511000000000 00000000000 000134567899999866 45554554 55568888886655
Q ss_pred cCCC-CCceeEEeeecCCEEEEEEeCC
Q 003886 484 TPAE-SNFSWSLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 484 t~~~-~~~~~~~~s~dg~~l~~~~ss~ 509 (789)
...+ .. ....++++++.|+....+.
T Consensus 289 ~~~~h~~-~v~~~~~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 289 FAKFNED-SVVKIACSDNILCLATSDD 314 (342)
T ss_dssp CCCCSSS-EEEEEEECSSEEEEEEECT
T ss_pred hhcccCC-CceEecCCCCeEEEEecCC
Confidence 5443 32 2223338888777666544
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.9e-09 Score=113.42 Aligned_cols=205 Identities=9% Similarity=0.051 Sum_probs=130.2
Q ss_pred cccEEEEeCCCC-CeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecC-CCCEEEEEeecC
Q 003886 154 TGASAVVPSPSG-SKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNS-DETLIAYVAEEP 229 (789)
Q Consensus 154 ~~~~~~~~SPdG-~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSp-Dg~~la~~~~~~ 229 (789)
..+...+|||+| +.|+.....+ .+.+| ..++....... .+..+.| ..+.|+| |++.|+..+.
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~-~~h~~~v------~~~~~~~~~~~~l~s~~~-- 139 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGG-----DIILWDYDVQNKTSFIQG-MGPGDAI------TGMKFNQFNTNQLFVSSI-- 139 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTS-----CEEEEETTSTTCEEEECC-CSTTCBE------EEEEEETTEEEEEEEEET--
T ss_pred CCEEEEEECCCCCCEEEEEcCCC-----eEEEEeCCCcccceeeec-CCcCCce------eEEEeCCCCCCEEEEEeC--
Confidence 358889999999 7887766543 35666 33444444432 1222333 7899999 6676666533
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCC-CCCccceEEEeeCCCC
Q 003886 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEG 308 (789)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~-~~~~~~~~~wSPDg~~ 308 (789)
+..|.+||+.++....+.... ....+..++|+||++.
T Consensus 140 ------------------------------------------d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 177 (383)
T 3ei3_B 140 ------------------------------------------RGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQM 177 (383)
T ss_dssp ------------------------------------------TTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTE
T ss_pred ------------------------------------------CCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCE
Confidence 257899999987766663222 1245779999999997
Q ss_pred CccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCC-EEE
Q 003886 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK-FLV 387 (789)
Q Consensus 309 ~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~-~la 387 (789)
|+..+ .+..|+++|+ .+.....+..+...+...+|+|+|+ .|+
T Consensus 178 ----l~~~~---------------~d~~i~i~d~-----------------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 221 (383)
T 3ei3_B 178 ----LATGD---------------STGRLLLLGL-----------------DGHEIFKEKLHKAKVTHAEFNPRCDWLMA 221 (383)
T ss_dssp ----EEEEE---------------TTSEEEEEET-----------------TSCEEEEEECSSSCEEEEEECSSCTTEEE
T ss_pred ----EEEEC---------------CCCCEEEEEC-----------------CCCEEEEeccCCCcEEEEEECCCCCCEEE
Confidence 76655 2347889997 5556677777777889999999999 555
Q ss_pred EEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCcccc-CCCEEEEEEEeCC
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS-DGCTMLLSSIWGS 466 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~-Dg~~l~~~~~~~~ 466 (789)
..+.+ ..|.+||+.+...... ....... ...+..+.|+| ||+.|+ ++..++
T Consensus 222 s~~~d-----------~~i~iwd~~~~~~~~~------~~~~~~~----------~~~v~~~~~s~~~~~~l~-~~~~d~ 273 (383)
T 3ei3_B 222 TSSVD-----------ATVKLWDLRNIKDKNS------YIAEMPH----------EKPVNAAYFNPTDSTKLL-TTDQRN 273 (383)
T ss_dssp EEETT-----------SEEEEEEGGGCCSTTC------EEEEEEC----------SSCEEEEEECTTTSCEEE-EEESSS
T ss_pred EEeCC-----------CEEEEEeCCCCCcccc------eEEEecC----------CCceEEEEEcCCCCCEEE-EEcCCC
Confidence 54433 2589999876432110 1111110 11345678999 998664 444455
Q ss_pred eEEEEEEECCCCcE
Q 003886 467 SQVIISVNVSSGEL 480 (789)
Q Consensus 467 ~~~l~~~dl~tg~~ 480 (789)
. |..+|+.+++.
T Consensus 274 ~--i~iwd~~~~~~ 285 (383)
T 3ei3_B 274 E--IRVYSSYDWSK 285 (383)
T ss_dssp E--EEEEETTBTTS
T ss_pred c--EEEEECCCCcc
Confidence 4 55557666543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.3e-10 Score=119.32 Aligned_cols=281 Identities=9% Similarity=-0.014 Sum_probs=148.7
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
.++|||++++-. ...+.+.++++.+. .....+.... ..+...+|||||++||..... +...+|
T Consensus 73 ~~sp~~~~l~s~---------s~D~~v~iWd~~~~-~~~~~~~~h~-----~~v~~~~~s~~g~~las~~~d--~~v~iw 135 (380)
T 3iz6_a 73 DWTPEKNWIVSA---------SQDGRLIVWNALTS-QKTHAIKLHC-----PWVMECAFAPNGQSVACGGLD--SACSIF 135 (380)
T ss_dssp EECTTSSCEEEE---------ETTSEEEEEETTTT-EEEEEEECCC-----TTCCCCEECTTSSEEEECCSS--SCCEEE
T ss_pred EEcCCCCEEEEE---------eCCCeEEEEECCCC-ccceEEecCC-----CCEEEEEECCCCCEEEEeeCC--CcEEEE
Confidence 356788766432 23456667665222 2222222222 346778999999999875443 333344
Q ss_pred EEecCCce---eEEEecCCCccccccCCCcccceeecCCCC-EEEEEeecCCCCCCCccCCCCCCCCC-----CcCCCCC
Q 003886 183 ELWSQSQL---EKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVAEEPSPSKPTFSLGSTKGGSS-----DKDCNSW 253 (789)
Q Consensus 183 ~i~~~~~~---~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~-~la~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 253 (789)
.+...... ........+..+.+ ..+.|+|++. .|+..+.+.... .|+......... ...+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v------~~~~~~~~~~~~l~s~s~D~~i~--~wd~~~~~~~~~~~~~~~~~h~~~ 207 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYA------SSCQYVPDQETRLITGSGDQTCV--LWDVTTGQRISIFGSEFPSGHTAD 207 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCC------CCCBCCSSSSSCEEEECTTSCEE--EECTTTCCEEEEECCCSSSSCCSC
T ss_pred ECCCCccccCCccceeeccCCCcce------EEEEEecCCCCEEEEECCCCcEE--EEEcCCCcEEEEeecccCCCCccC
Confidence 33311100 00011111222233 6788999754 566666555432 343222211100 0112222
Q ss_pred CCcceeeC-CcccccCCccCceEEEEEccC-Cc-eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeee
Q 003886 254 KGQGDWEE-DWGETYAGKRQPSLFVININS-GE-VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYC 330 (789)
Q Consensus 254 ~~~~~~~~-d~g~~~~~~~~~~l~v~d~~~-g~-~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~ 330 (789)
.....|.+ +....+++..+..|.+||+.. ++ ...+ ......+..++|+|||+. |+..+
T Consensus 208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~----l~s~s------------- 268 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY--HGHEGDINSVKFFPDGQR----FGTGS------------- 268 (380)
T ss_dssp EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE--CCCSSCCCEEEECTTSSE----EEEEC-------------
T ss_pred eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE--CCcCCCeEEEEEecCCCe----EEEEc-------------
Confidence 22233433 322334455678899999863 33 3344 233446789999999997 76665
Q ss_pred ccCCcceEEEecccccchhhhhhhhcCCCCCCCe-eecCCC-------CCccCcceecCCCCEEEEEecCCCCCCCCccc
Q 003886 331 YNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLTES-------ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 402 (789)
Q Consensus 331 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~-------~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~ 402 (789)
.+..|.++|+ .++.. ..+... ...+...+|||||+.|+..+.+
T Consensus 269 --~D~~i~lwd~-----------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d---------- 319 (380)
T 3iz6_a 269 --DDGTCRLFDM-----------------RTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN---------- 319 (380)
T ss_dssp --SSSCEEEEET-----------------TTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT----------
T ss_pred --CCCeEEEEEC-----------------CCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC----------
Confidence 2336778887 33332 222211 1236778999999988766543
Q ss_pred cceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 403 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 403 ~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
..|++||..+++... .+..... -....+..+.|+|||+.| +++..++...||.+
T Consensus 320 -g~i~vwd~~~~~~~~---------~~~~~~~------~h~~~v~~l~~s~dg~~l-~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 320 -GDCYVWDTLLAEMVL---------NLGTLQN------SHEGRISCLGLSSDGSAL-CTGSWDKNLKIWAF 373 (380)
T ss_dssp -SCEEEEETTTCCEEE---------EECCSCS------SCCCCCCEEEECSSSSEE-EEECTTSCEEEEEC
T ss_pred -CCEEEEECCCCceEE---------EEecccC------CCCCceEEEEECCCCCEE-EEeeCCCCEEEEec
Confidence 259999987654321 0000000 011245678899999955 67777777777754
|
| >3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.12A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.12 E-value=7.4e-11 Score=124.48 Aligned_cols=178 Identities=13% Similarity=0.091 Sum_probs=109.9
Q ss_pred CCeeEEEEEEecCCCCC-CCCCcEEEEEcCCCCCCCchhhHHHHHHHHH------CCcEEEEEcCCCCCCCCchhhccC-
Q 003886 572 AQKPFEAIFVSSSHKKD-CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS------VGYSLLIVNYRGSLGFGEEALQSL- 643 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~-~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~------~Gy~V~~~d~rGs~G~G~~~~~~~- 643 (789)
-|.....++++|+++++ .+++|+|+++||... ..........++. .+++||.+++.. +..++....
T Consensus 22 l~~~r~~~VylP~~y~~~~~~yPVlylldG~~~---f~~~~~~~~~l~~~~~~~~~~~IvV~i~~~~---R~~dytp~~~ 95 (331)
T 3gff_A 22 LKETREYVIALPEGYAQSLEAYPVVYLLDGEDQ---FDHMASLLQFLSQGTMPQIPKVIIVGIHNTN---RMRDYTPTHT 95 (331)
T ss_dssp TTEEEEEEEECCTTGGGSCCCEEEEEESSHHHH---HHHHHHHHHHHTCSSSCSSCCCEEEEECCSS---HHHHSCSSCC
T ss_pred CCCeEEEEEEeCCCCCCCCCCccEEEEecChhh---hHHHHHHHHHHHhhhhcCCCCEEEEEECCCC---cccccCCCcc
Confidence 36778899999998865 688999999999311 0111112334443 358899988621 111111000
Q ss_pred ----CC---------CCCcccHHHHH--HHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccch
Q 003886 644 ----PG---------KVGSQDVNDVL--TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708 (789)
Q Consensus 644 ----~~---------~~~~~~~~D~~--~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~ 708 (789)
.+ ..+.....+.+ +.+.++.++..++..| +|+|||+||+++++++.++|++|+++++.+|...+
T Consensus 96 ~~~~~G~~~~~~~~~~g~~~~~~~~l~~el~p~i~~~~~~~~~r-~i~G~S~GG~~al~~~~~~p~~F~~~~~~S~~~w~ 174 (331)
T 3gff_A 96 LVLPSGNKGNPQYQHTGGAGRFLDFIEKELAPSIESQLRTNGIN-VLVGHSFGGLVAMEALRTDRPLFSAYLALDTSLWF 174 (331)
T ss_dssp SBCTTSSBCCGGGGGCCCHHHHHHHHHHTHHHHHHHHSCEEEEE-EEEEETHHHHHHHHHHHTTCSSCSEEEEESCCTTT
T ss_pred ccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHCCCCCCe-EEEEECHHHHHHHHHHHhCchhhheeeEeCchhcC
Confidence 00 11122233322 3455665554466555 79999999999999999999999999999997532
Q ss_pred hhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCC-------CCChHHHHHH
Q 003886 709 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDL-------RVPVSNGLQV 781 (789)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~-------~vp~~~~~~l 781 (789)
... .. .+...... ........|+++.||+.|. .++...+.++
T Consensus 175 ~~~------------~~--------------~~~~~~~~-----~~~~~~~~~l~l~~G~~d~~~~~~~~~~~~~~~~~l 223 (331)
T 3gff_A 175 DSP------------HY--------------LTLLEERV-----VKGDFKQKQLFMAIANNPLSPGFGVSSYHKDLNLAF 223 (331)
T ss_dssp TTT------------HH--------------HHHHHHHH-----HHCCCSSEEEEEEECCCSEETTTEECCHHHHHHHHH
T ss_pred ChH------------HH--------------HHHHHHHh-----hcccCCCCeEEEEeCCCCCCCccchHHHHHHHHHHH
Confidence 100 00 01111111 1112245799999999998 6788888999
Q ss_pred HHHCCC
Q 003886 782 IYHIPF 787 (789)
Q Consensus 782 ~~~l~~ 787 (789)
+++|+.
T Consensus 224 ~~~Lk~ 229 (331)
T 3gff_A 224 ADKLTK 229 (331)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988863
|
| >3fle_A SE_1780 protein; structural genomics, APC61035.1, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.01A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.7e-10 Score=110.80 Aligned_cols=179 Identities=13% Similarity=0.062 Sum_probs=108.6
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCc--EEEEEcCCCCC-----CCCchh-hcc-----CCCC-CCc--ccHHHH
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY--SLLIVNYRGSL-----GFGEEA-LQS-----LPGK-VGS--QDVNDV 655 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy--~V~~~d~rGs~-----G~G~~~-~~~-----~~~~-~~~--~~~~D~ 655 (789)
.+.||++||..+ ....|......|++.|| .|+.+|.++.+ |..... .+. ...+ .+. ...+++
T Consensus 6 ~~pvvliHG~~~--~~~~~~~l~~~L~~~g~~~~vi~~dv~~~G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~~l 83 (249)
T 3fle_A 6 TTATLFLHGYGG--SERSETFMVKQALNKNVTNEVITARVSSEGKVYFDKKLSEDAANPIVKVEFKDNKNGNFKENAYWI 83 (249)
T ss_dssp CEEEEEECCTTC--CGGGTHHHHHHHHTTTSCSCEEEEEECSSCCEEESSCCC--CCSCEEEEEESSTTCCCHHHHHHHH
T ss_pred CCcEEEECCCCC--ChhHHHHHHHHHHHcCCCceEEEEEECCCCCEEEccccccccCCCeEEEEcCCCCCccHHHHHHHH
Confidence 466888999655 46788888999999996 58888877421 111000 000 0000 111 125677
Q ss_pred HHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCC-----ceeEEEEeCCccchhhhhcCCCCCcchhhhhccCcc
Q 003886 656 LTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKG 730 (789)
Q Consensus 656 ~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~-----~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (789)
.++++++.++ .+.+++.++||||||.+++.++.++|+ +++.+|+.++..+...... +.+.. ..+..
T Consensus 84 ~~~i~~l~~~--~~~~~~~lvGHSmGG~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~--~~~~~---~~~~~-- 154 (249)
T 3fle_A 84 KEVLSQLKSQ--FGIQQFNFVGHSMGNMSFAFYMKNYGDDRHLPQLKKEVNIAGVYNGILNMN--ENVNE---IIVDK-- 154 (249)
T ss_dssp HHHHHHHHHT--TCCCEEEEEEETHHHHHHHHHHHHHSSCSSSCEEEEEEEESCCTTCCTTTS--SCTTT---SCBCT--
T ss_pred HHHHHHHHHH--hCCCceEEEEECccHHHHHHHHHHCcccccccccceEEEeCCccCCccccc--CCcch---hhhcc--
Confidence 7788888776 355799999999999999999998763 7899998886554221110 00000 00000
Q ss_pred ccccCCCCCh--hhHHHHHhcCccccCCCCCCCEEEEEeC------CCCCCChHHHHHHHHHCCC
Q 003886 731 KDSFTESPSV--EDLTRFHSKSPISHISKVKTPTIFLLGA------QDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 731 ~~~~~~~~~~--~~~~~~~~~sp~~~~~~i~~P~Lii~G~------~D~~vp~~~~~~l~~~l~~ 787 (789)
.+.|.. .....+.+. ...+.+.++|+|.|+|+ .|.+||...++.+...+++
T Consensus 155 ----~g~p~~~~~~~~~l~~~--~~~~p~~~~~vl~I~G~~~~~~~sDG~V~~~Sa~~~~~l~~~ 213 (249)
T 3fle_A 155 ----QGKPSRMNAAYRQLLSL--YKIYCGKEIEVLNIYGDLEDGSHSDGRVSNSSSQSLQYLLRG 213 (249)
T ss_dssp ----TCCBSSCCHHHHHTGGG--HHHHTTTTCEEEEEEEECCSSSCBSSSSBHHHHHTHHHHSTT
T ss_pred ----cCCCcccCHHHHHHHHH--HhhCCccCCeEEEEeccCCCCCCCCCcccHHHHHHHHHHHhh
Confidence 111110 112222111 22345567899999998 7999999999877666654
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.3e-09 Score=112.50 Aligned_cols=246 Identities=10% Similarity=0.040 Sum_probs=143.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCc----eeEEEecCCCccccccCCCcccceeecCCCC-EEEEEe
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQ----LEKEFHVPQTVHGSVYADGWFEGISWNSDET-LIAYVA 226 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~----~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~-~la~~~ 226 (789)
..+...+|||||++|+.....+ .+.+| ..++ ........ +.| ..+.|+|||+ .|+..+
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~-----~v~iw~~~~~~~~~~~~~~~~~~----~~v------~~~~~~~~~~~~l~~~~ 76 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDG-----SLTVYKFDIQAKNVDLLQSLRYK----HPL------LCCNFIDNTDLQIYVGT 76 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTS-----EEEEEEEETTTTEEEEEEEEECS----SCE------EEEEEEESSSEEEEEEE
T ss_pred CcEEEEEEcCCCCEEEEEcCCC-----eEEEEEeCCCCccccceeeeecC----Cce------EEEEECCCCCcEEEEEc
Confidence 4588999999999998876543 34455 2333 22222222 222 7899999999 888764
Q ss_pred ecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEc-cCCceEeccCCCCCCccceEEEeeC
Q 003886 227 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI-NSGEVQAVKGIPKSLSVGQVVWAPL 305 (789)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~-~~g~~~~l~~~~~~~~~~~~~wSPD 305 (789)
.+ ..|.+||+ .+++...+.+......+..+.|+|
T Consensus 77 ~d--------------------------------------------g~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~- 111 (342)
T 1yfq_A 77 VQ--------------------------------------------GEILKVDLIGSPSFQALTNNEANLGICRICKYG- 111 (342)
T ss_dssp TT--------------------------------------------SCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-
T ss_pred CC--------------------------------------------CeEEEEEeccCCceEeccccCCCCceEEEEeCC-
Confidence 32 56899999 988887773211455678999999
Q ss_pred CCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCccCcceecCCCC
Q 003886 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGK 384 (789)
Q Consensus 306 g~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~ 384 (789)
++. |+..+ .+..|+++|+....... ....++ ...+. ....+....|+|++
T Consensus 112 ~~~----l~s~~---------------~d~~i~iwd~~~~~~~~--------~~~~~~~~~~~~-~~~~v~~~~~~~~~- 162 (342)
T 1yfq_A 112 DDK----LIAAS---------------WDGLIEVIDPRNYGDGV--------IAVKNLNSNNTK-VKNKIFTMDTNSSR- 162 (342)
T ss_dssp TTE----EEEEE---------------TTSEEEEECHHHHTTBC--------EEEEESCSSSSS-SCCCEEEEEECSSE-
T ss_pred CCE----EEEEc---------------CCCeEEEEccccccccc--------ccccCCeeeEEe-eCCceEEEEecCCc-
Confidence 775 66554 23368888872100000 000022 22233 45567889999998
Q ss_pred EEEEEecCCCCCCCCccccceeEEeecCC-CCCCCcccceeeEEeeeeccCCCCCccccccCCCCCcccc-CCCEEEEEE
Q 003886 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPT-NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS-DGCTMLLSS 462 (789)
Q Consensus 385 ~la~~s~~~~~~~g~~~~~~~L~~~d~~~-~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~-Dg~~l~~~~ 462 (789)
|+..+.+ ..|++||+.+ +....... . .. ....+..+.|+| |++.+ +++
T Consensus 163 -l~~~~~d-----------~~i~i~d~~~~~~~~~~~~------~---~~--------~~~~i~~i~~~~~~~~~l-~~~ 212 (342)
T 1yfq_A 163 -LIVGMNN-----------SQVQWFRLPLCEDDNGTIE------E---SG--------LKYQIRDVALLPKEQEGY-ACS 212 (342)
T ss_dssp -EEEEEST-----------TEEEEEESSCCTTCCCEEE------E---CS--------CSSCEEEEEECSGGGCEE-EEE
T ss_pred -EEEEeCC-----------CeEEEEECCccccccceee------e---cC--------CCCceeEEEECCCCCCEE-EEE
Confidence 5554433 3699999876 33211000 0 00 001234668999 99855 555
Q ss_pred EeCCeEEEEEEECC-----CCcEEEecCCCC---------CceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 463 IWGSSQVIISVNVS-----SGELLRITPAES---------NFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 463 ~~~~~~~l~~~dl~-----tg~~~~lt~~~~---------~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
..++...||.++.. ......+..... .+....++++++.|+.... .. .+.+.++.+
T Consensus 213 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg---~i~vwd~~~ 282 (342)
T 1yfq_A 213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-DG---IISCWNLQT 282 (342)
T ss_dssp ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET-TS---CEEEEETTT
T ss_pred ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC-Cc---eEEEEcCcc
Confidence 66777778777654 123333332211 3445578888887654443 22 367777654
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.3e-08 Score=106.56 Aligned_cols=162 Identities=9% Similarity=-0.002 Sum_probs=104.9
Q ss_pred cceeecC--CCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEec
Q 003886 211 EGISWNS--DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV 288 (789)
Q Consensus 211 ~~~~wSp--Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l 288 (789)
..+.|+| +|+.|+..+.+ ..|.+||+.+++...+
T Consensus 129 ~~~~~~~~~~~~~l~s~s~d--------------------------------------------g~i~~wd~~~~~~~~~ 164 (343)
T 3lrv_A 129 IYMYGHNEVNTEYFIWADNR--------------------------------------------GTIGFQSYEDDSQYIV 164 (343)
T ss_dssp EEEECCC---CCEEEEEETT--------------------------------------------CCEEEEESSSSCEEEE
T ss_pred EEEEcCCCCCCCEEEEEeCC--------------------------------------------CcEEEEECCCCcEEEE
Confidence 7899999 99988876543 5688999999887554
Q ss_pred cCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-e-ee
Q 003886 289 KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-V-VN 366 (789)
Q Consensus 289 ~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~-~~ 366 (789)
........+..++|+|||+. |+..+ .+..|.++|+ .+++ . ..
T Consensus 165 ~~~~~~~~i~~~~~~pdg~~----lasg~---------------~dg~i~iwd~-----------------~~~~~~~~~ 208 (343)
T 3lrv_A 165 HSAKSDVEYSSGVLHKDSLL----LALYS---------------PDGILDVYNL-----------------SSPDQASSR 208 (343)
T ss_dssp ECCCSSCCCCEEEECTTSCE----EEEEC---------------TTSCEEEEES-----------------SCTTSCCEE
T ss_pred EecCCCCceEEEEECCCCCE----EEEEc---------------CCCEEEEEEC-----------------CCCCCCccE
Confidence 21223335789999999986 55544 2336888888 3333 3 45
Q ss_pred cCC-CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccC
Q 003886 367 LTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 445 (789)
Q Consensus 367 Lt~-~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~ 445 (789)
+.. +...+...+|||||++|+..+.. .|.+||+.++........... ..+ .
T Consensus 209 ~~~~h~~~v~~l~fs~~g~~l~s~~~~------------~v~iwd~~~~~~~~~~~~~~~----------~~~------~ 260 (343)
T 3lrv_A 209 FPVDEEAKIKEVKFADNGYWMVVECDQ------------TVVCFDLRKDVGTLAYPTYTI----------PEF------K 260 (343)
T ss_dssp CCCCTTSCEEEEEECTTSSEEEEEESS------------BEEEEETTSSTTCBSSCCCBC--------------------
T ss_pred EeccCCCCEEEEEEeCCCCEEEEEeCC------------eEEEEEcCCCCcceeeccccc----------ccc------c
Confidence 665 66788999999999998877721 499999987544211110000 000 1
Q ss_pred CC--CCccccCCCEEEEEEEeCCeEEEEEEECCCCcE
Q 003886 446 IL--SNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL 480 (789)
Q Consensus 446 ~~--~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~ 480 (789)
+. .+.|+|+|+.|+..+..++...||.++......
T Consensus 261 ~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~ 297 (343)
T 3lrv_A 261 TGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNW 297 (343)
T ss_dssp -CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSE
T ss_pred ccceEEEECCCCCEEEEecCCCCcEEEEEEcccccce
Confidence 11 378999999776544336777888776444333
|
| >3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat esterase family 15 (CE-15), N-linked glycosylation, secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-10 Score=118.62 Aligned_cols=117 Identities=19% Similarity=0.198 Sum_probs=91.2
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcC--------CCCCCCCchhhc--c
Q 003886 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNY--------RGSLGFGEEALQ--S 642 (789)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~--------rGs~G~G~~~~~--~ 642 (789)
...+...+++|.+ ..++.|+||.+||+... ..+||+|+.+++ +|+.|+|. |.+ .
T Consensus 89 s~~~~~~i~lP~~--~~~p~Pvii~i~~~~~~-------------~~~G~a~~~~~~~~v~~~~~~gs~g~g~-f~~ly~ 152 (375)
T 3pic_A 89 SISFTVTITYPSS--GTAPYPAIIGYGGGSLP-------------APAGVAMINFNNDNIAAQVNTGSRGQGK-FYDLYG 152 (375)
T ss_dssp EEEEEEEEECCSS--SCSSEEEEEEETTCSSC-------------CCTTCEEEEECHHHHSCCSSGGGTTCSH-HHHHHC
T ss_pred eeEEEEEEECCCC--CCCCccEEEEECCCccc-------------cCCCeEEEEecccccccccCCCCcccee-cccccC
Confidence 3568899999974 34788999999984221 357999999997 66667776 331 1
Q ss_pred CCCCCCcccH--HHHHHHHHHHHHcC--CCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 643 LPGKVGSQDV--NDVLTAIDHVIDMG--LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 643 ~~~~~~~~~~--~D~~~~i~~l~~~~--~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
....+|.... -++..+++||..++ .||++||+|+|||+||..++++++.. +||+++|..++..
T Consensus 153 ~~~~~gal~awaWg~~raid~L~~~~~~~VD~~RIgv~G~S~gG~~al~~aA~D-~Ri~~~v~~~~g~ 219 (375)
T 3pic_A 153 SSHSAGAMTAWAWGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFE-KRIVLTLPQESGA 219 (375)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHCGGGCEEEEEEEEEEETHHHHHHHHHHHHC-TTEEEEEEESCCT
T ss_pred CccchHHHHHHHHHHHHHHHHHHhCCccCcChhhEEEEEeCCccHHHHHHHhcC-CceEEEEeccCCC
Confidence 1234554433 58999999999988 89999999999999999999999986 5999999988644
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.11 E-value=2.7e-09 Score=115.82 Aligned_cols=259 Identities=12% Similarity=0.064 Sum_probs=145.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCc------eeEEEecCCCccccccCCCcccceeecCC----C--
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQ------LEKEFHVPQTVHGSVYADGWFEGISWNSD----E-- 219 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~------~~~~~~~~~~~~g~v~~d~~~~~~~wSpD----g-- 219 (789)
..+...+|+| +.|+..+..+ .+.+| ..++ ....+.. ..+.| ..+.|+|| |
T Consensus 17 ~~i~~~~~~~--~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~---h~~~v------~~~~~~~~~~~~g~~ 80 (397)
T 1sq9_A 17 ADIFSVSACN--SFTVSCSGDG-----YLKVWDNKLLDNENPKDKSYSHFV---HKSGL------HHVDVLQAIERDAFE 80 (397)
T ss_dssp SCEEEEEECS--SEEEEEETTS-----EEEEEESBCCTTCCGGGGEEEEEC---CTTCE------EEEEEEEEEETTTEE
T ss_pred cCeEEEEecC--CeEEEEcCCC-----EEEEEECCCcccccCCCcceEEec---CCCcE------EEEEEecccccCCcc
Confidence 4588899999 6777765543 45566 3333 2222221 11222 78999999 9
Q ss_pred -CEEEEEeecCCCCCCCccCCCCCC-----CCCCcCC-----CCCCCcceee----CCccc-ccCCccCceEEEEEccC-
Q 003886 220 -TLIAYVAEEPSPSKPTFSLGSTKG-----GSSDKDC-----NSWKGQGDWE----EDWGE-TYAGKRQPSLFVININS- 282 (789)
Q Consensus 220 -~~la~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----~~~~~~~~~~----~d~g~-~~~~~~~~~l~v~d~~~- 282 (789)
+.|+..+.+.... .|+...... ......+ ........|. ++... .+++..+..|.+||+.+
T Consensus 81 ~~~l~s~~~dg~i~--iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 158 (397)
T 1sq9_A 81 LCLVATTSFSGDLL--FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF 158 (397)
T ss_dssp EEEEEEEETTSCEE--EEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred ccEEEEEcCCCCEE--EEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcc
Confidence 8888877655332 333222211 1111222 1334456788 77655 56666778999999987
Q ss_pred -----CceE------eccC-----CCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEeccccc
Q 003886 283 -----GEVQ------AVKG-----IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYK 346 (789)
Q Consensus 283 -----g~~~------~l~~-----~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~ 346 (789)
++.. .+.+ ......+..+.|+||| . |+..+ ....|+++|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~----l~~~~---------------~dg~i~i~d~---- 214 (397)
T 1sq9_A 159 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L----IATGF---------------NNGTVQISEL---- 214 (397)
T ss_dssp SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E----EEEEC---------------TTSEEEEEET----
T ss_pred ccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-e----EEEEe---------------CCCcEEEEEC----
Confidence 4432 2211 1124467789999999 8 88766 2336888887
Q ss_pred chhhhhhhhcCCCCCCC-eeecCC---C---CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCc
Q 003886 347 SEASELELKESSSEDLP-VVNLTE---S---ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 419 (789)
Q Consensus 347 ~~~~~~~~~~~~~~~~~-~~~Lt~---~---~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~ 419 (789)
.+++ ...+.. + ...+...+|+|||+.|+..+.+. ....|.+||+.++.....
T Consensus 215 -------------~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~--------~~g~i~i~d~~~~~~~~~ 273 (397)
T 1sq9_A 215 -------------STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN--------SFGCITLYETEFGERIGS 273 (397)
T ss_dssp -------------TTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET--------TEEEEEEEETTTCCEEEE
T ss_pred -------------CCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC--------CCceEEEEECCCCcccce
Confidence 3333 344444 4 66788999999999988777541 114699999877543211
Q ss_pred ccceeeEEeeeeccCCCCCcc-ccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecC
Q 003886 420 LEKIVDVIPVVQCAEGDCFPG-LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP 485 (789)
Q Consensus 420 t~~~~~v~~~~~~~~~~~f~g-~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~ 485 (789)
..... .+....... .....+..+.|+||++.| +++..++ .|..+|+.+++......
T Consensus 274 ~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg--~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 274 LSVPT-------HSSQASLGEFAHSSWVMSLSFNDSGETL-CSAGWDG--KLRFWDVKTKERITTLN 330 (397)
T ss_dssp ECBC---------------CCBSBSSCEEEEEECSSSSEE-EEEETTS--EEEEEETTTTEEEEEEE
T ss_pred eccCc-------ccccccccccccCCcEEEEEECCCCCEE-EEEeCCC--eEEEEEcCCCceeEEEe
Confidence 11000 000000000 001234567899999965 4445455 45556887877655443
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.8e-09 Score=125.34 Aligned_cols=246 Identities=11% Similarity=0.029 Sum_probs=148.1
Q ss_pred cccEEEEeCCCCCe-EEEEecCCCCCCeEEEEec---CCce--eEEEecCCCccccccCCCcccceeecCCCCEEEEEee
Q 003886 154 TGASAVVPSPSGSK-LLVVRNPENESPIQFELWS---QSQL--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (789)
Q Consensus 154 ~~~~~~~~SPdG~~-la~~~~~~~~~~~~~~i~~---~~~~--~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~ 227 (789)
..+...+|+|++.. |+..+..+ .+.+|+ .... .....+ .++.+.| ..+.|||||+.|+..+.
T Consensus 383 ~~V~~v~~~~~~~~~l~s~s~D~-----~i~~W~~~~~~~~~~~~~~~~-~~h~~~v------~~v~~s~~g~~l~sgs~ 450 (694)
T 3dm0_A 383 DMVTAIATPIDNADIIVSASRDK-----SIILWKLTKDDKAYGVAQRRL-TGHSHFV------EDVVLSSDGQFALSGSW 450 (694)
T ss_dssp SCEEEEECCTTCCSEEEEEETTS-----EEEEEECCCSTTCSCEEEEEE-ECCSSCE------EEEEECTTSSEEEEEET
T ss_pred ceeEEEEecCCCCCEEEEEeCCC-----cEEEEEccCCCccccccccee-cCCCCcE------EEEEECCCCCEEEEEeC
Confidence 45888999998754 54444432 456662 1111 111111 1222223 78999999999998877
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC--CCCCCccceEEEeeC
Q 003886 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG--IPKSLSVGQVVWAPL 305 (789)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~--~~~~~~~~~~~wSPD 305 (789)
+...+ .|+............+...+....|+++....+++..+..|.+||..+.....+.. ......+..+.|+|+
T Consensus 451 Dg~v~--vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 451 DGELR--LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp TSEEE--EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred CCcEE--EEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence 65433 34432222222233444445566788887666777778899999987665544420 112234678999999
Q ss_pred CCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC-CeeecCCCCCccCcceecCCCC
Q 003886 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGK 384 (789)
Q Consensus 306 g~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~SpDG~ 384 (789)
+... +++++. .+..|.++|+ .++ ....+..+.+.+...+|||||+
T Consensus 529 ~~~~---~l~s~s--------------~d~~v~vwd~-----------------~~~~~~~~~~~h~~~v~~v~~spdg~ 574 (694)
T 3dm0_A 529 TLQP---TIVSAS--------------WDKTVKVWNL-----------------SNCKLRSTLAGHTGYVSTVAVSPDGS 574 (694)
T ss_dssp SSSC---EEEEEE--------------TTSCEEEEET-----------------TTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred CCcc---eEEEEe--------------CCCeEEEEEC-----------------CCCcEEEEEcCCCCCEEEEEEeCCCC
Confidence 8430 444432 2336888887 333 3456777777889999999999
Q ss_pred EEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe
Q 003886 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 464 (789)
Q Consensus 385 ~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~ 464 (789)
.|+..+.+. .|.+||+.++......... ..+..++|+||+..|. .+.
T Consensus 575 ~l~sg~~Dg-----------~i~iwd~~~~~~~~~~~~~--------------------~~v~~~~~sp~~~~l~-~~~- 621 (694)
T 3dm0_A 575 LCASGGKDG-----------VVLLWDLAEGKKLYSLEAN--------------------SVIHALCFSPNRYWLC-AAT- 621 (694)
T ss_dssp EEEEEETTS-----------BCEEEETTTTEEEECCBCS--------------------SCEEEEEECSSSSEEE-EEE-
T ss_pred EEEEEeCCC-----------eEEEEECCCCceEEEecCC--------------------CcEEEEEEcCCCcEEE-EEc-
Confidence 988777543 5899998775432110000 1234568999987553 333
Q ss_pred CCeEEEEEEECCCCcEEE
Q 003886 465 GSSQVIISVNVSSGELLR 482 (789)
Q Consensus 465 ~~~~~l~~~dl~tg~~~~ 482 (789)
++. |..+|+.+++...
T Consensus 622 ~~~--i~iwd~~~~~~~~ 637 (694)
T 3dm0_A 622 EHG--IKIWDLESKSIVE 637 (694)
T ss_dssp TTE--EEEEETTTTEEEE
T ss_pred CCC--EEEEECCCCCChh
Confidence 333 6667887877544
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.10 E-value=7.9e-09 Score=109.32 Aligned_cols=248 Identities=15% Similarity=0.107 Sum_probs=134.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
..+....|||||++|+...... ...+|. .+............ .....++|+++.|+..+.+...
T Consensus 87 ~~V~~~~~s~dg~~l~s~~~d~-----~i~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~s~s~d~~~ 152 (340)
T 4aow_A 87 HFVSDVVISSDGQFALSGSWDG-----TLRLWDLTTGTTTRRFVGHTKD---------VLSVAFSSDNRQIVSGSRDKTI 152 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECCSSC---------EEEEEECTTSSCEEEEETTSCE
T ss_pred CCEEEEEECCCCCEEEEEcccc-----cceEEeecccceeeeecCCCCc---------eeEEEEeecCccceeecCCCeE
Confidence 4588899999999999876654 455553 22222222221111 1567899999999887765432
Q ss_pred CCCCccCCCCC-CCCCCcCCCCCCCcceeeCCcccc--cCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCC
Q 003886 232 SKPTFSLGSTK-GGSSDKDCNSWKGQGDWEEDWGET--YAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 232 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~g~~--~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~ 308 (789)
. .|+..... .......+........|.++.... ..+..+..|.+||+.+++..... ......+..++|+|||+.
T Consensus 153 ~--~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~-~~h~~~v~~~~~s~~~~~ 229 (340)
T 4aow_A 153 K--LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH-IGHTGYLNTVTVSPDGSL 229 (340)
T ss_dssp E--EECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSE
T ss_pred E--EEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe-cCCCCcEEEEEECCCCCE
Confidence 2 22211100 001111122222223344432221 23345678999999988765442 233446788999999997
Q ss_pred CccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEE
Q 003886 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVF 388 (789)
Q Consensus 309 ~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~ 388 (789)
|+..+ .+..|.++|+ .+............+....|+|++..++-
T Consensus 230 ----l~s~s---------------~Dg~i~iwd~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 273 (340)
T 4aow_A 230 ----CASGG---------------KDGQAMLWDL-----------------NEGKHLYTLDGGDIINALCFSPNRYWLCA 273 (340)
T ss_dssp ----EEEEE---------------TTCEEEEEET-----------------TTTEEEEEEECSSCEEEEEECSSSSEEEE
T ss_pred ----EEEEe---------------CCCeEEEEEe-----------------ccCceeeeecCCceEEeeecCCCCceeec
Confidence 66554 2336788887 33333222223345778899999875543
Q ss_pred EecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeE
Q 003886 389 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 468 (789)
Q Consensus 389 ~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 468 (789)
+.+ ..|.+||+.++......... .... ...+ ....+..+.|+|||+.| +++..++..
T Consensus 274 -~~d-----------~~i~iwd~~~~~~~~~~~~~--~~~~-------~~~~-h~~~v~~l~~s~dg~~l-~sgs~Dg~v 330 (340)
T 4aow_A 274 -ATG-----------PSIKIWDLEGKIIVDELKQE--VIST-------SSKA-EPPQCTSLAWSADGQTL-FAGYTDNLV 330 (340)
T ss_dssp -EET-----------TEEEEEETTTTEEEEEECCC----------------C-CCCCEEEEEECTTSSEE-EEEETTSCE
T ss_pred -cCC-----------CEEEEEECCCCeEEEecccc--ceee-------eccC-CCCCEEEEEECCCCCEE-EEEeCCCEE
Confidence 322 25899998764332110000 0000 0000 11134567899999865 566667777
Q ss_pred EEEEEECCCCc
Q 003886 469 VIISVNVSSGE 479 (789)
Q Consensus 469 ~l~~~dl~tg~ 479 (789)
.||.+. +|+
T Consensus 331 ~iW~~~--tGt 339 (340)
T 4aow_A 331 RVWQVT--IGT 339 (340)
T ss_dssp EEEEEE--C--
T ss_pred EEEeCC--CcC
Confidence 776554 664
|
| >2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase, hydrolase; 1.58A {Geobacillus stearothermophilus} PDB: 2ogs_A | Back alignment and structure |
|---|
Probab=99.10 E-value=7.3e-11 Score=131.93 Aligned_cols=134 Identities=19% Similarity=0.204 Sum_probs=94.2
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch-hhHHHHHHHHHCC-cEEEEEcCC-CCCCCCchhhccC--C
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLSSVG-YSLLIVNYR-GSLGFGEEALQSL--P 644 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~~~~~~~la~~G-y~V~~~d~r-Gs~G~G~~~~~~~--~ 644 (789)
+.|+..+. ++.|. ...++.|+||++|||+...... ........|+++| ++|+.+||| |..||+....... .
T Consensus 81 ~edcl~l~--v~~P~--~~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~~~~~~~ 156 (498)
T 2ogt_A 81 SEDGLYLN--IWSPA--ADGKKRPVLFWIHGGAFLFGSGSSPWYDGTAFAKHGDVVVVTINYRMNVFGFLHLGDSFGEAY 156 (498)
T ss_dssp BSCCCEEE--EEESC--SSSCCEEEEEEECCSTTTSCCTTCGGGCCHHHHHHHTCEEEEECCCCHHHHCCCCTTTTCGGG
T ss_pred CCCCcEEE--EEecC--CCCCCCcEEEEEcCCccCCCCCCCCcCCHHHHHhCCCEEEEeCCCcCchhhccCchhhccccc
Confidence 44666565 56775 2456799999999998543222 2222356777776 999999999 3334544321100 1
Q ss_pred CCCCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhC--CCceeEEEEeCCccc
Q 003886 645 GKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCN 707 (789)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~--p~~~~a~v~~~pv~~ 707 (789)
...+...+.|+.++++|+.++. ..|++||+|+|+|+||.+++.++... ..+|+++|+.+|...
T Consensus 157 ~~~~n~gl~D~~~al~wv~~~i~~fggdp~~V~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~~ 224 (498)
T 2ogt_A 157 AQAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVLLSLPEASGLFRRAMLQSGSGS 224 (498)
T ss_dssp TTGGGHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred cCCCCcccHHHHHHHHHHHHHHHHhCCCCCeEEEEEECHHHHHHHHHHhcccccchhheeeeccCCcc
Confidence 2234455899999999998862 36899999999999999999888753 458999999999764
|
| >3lp5_A Putative cell surface hydrolase; structural genom PSI2, MCSG, protein structure initiative, midwest center FO structural genomics; 2.00A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.5e-10 Score=112.58 Aligned_cols=163 Identities=12% Similarity=0.124 Sum_probs=102.6
Q ss_pred cEEEEEcCCCCCCCchhhHHHHHHHHHCC---cEEEEEcCCCCCCCCchhhc-------c-----CCCC-CC----cccH
Q 003886 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVG---YSLLIVNYRGSLGFGEEALQ-------S-----LPGK-VG----SQDV 652 (789)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~G---y~V~~~d~rGs~G~G~~~~~-------~-----~~~~-~~----~~~~ 652 (789)
+.||++||.++ ....|......|++.| +.|+.+|.++. |.+..... . ...+ -+ ....
T Consensus 5 ~pvv~iHG~~~--~~~~~~~~~~~L~~~~~~~~~vi~~~v~~~-G~~~~~G~~~~~~~~P~i~v~f~~n~~~~~~~~~~a 81 (250)
T 3lp5_A 5 APVIMVPGSSA--SQNRFDSLITELGKETPKKHSVLKLTVQTD-GTIKYSGSIAANDNEPFIVIGFANNRDGKANIDKQA 81 (250)
T ss_dssp CCEEEECCCGG--GHHHHHHHHHHHHHHSSSCCCEEEEEECTT-SCEEEEECCCTTCSSCEEEEEESCCCCSHHHHHHHH
T ss_pred CCEEEECCCCC--CHHHHHHHHHHHHhcCCCCceEEEEEEecC-CeEEEeeecCCCCcCCeEEEEeccCCCcccCHHHHH
Confidence 45778999655 3667888888998876 67887776641 12111000 0 0000 11 1124
Q ss_pred HHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC-----CCceeEEEEeCCccchhhhhcCCCCCcchhhhhcc
Q 003886 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-----PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYG 727 (789)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~-----p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~ 727 (789)
+++.++++++.++ .+.+++.++||||||.++..++.++ +++++.+|+.++..+-... . +.
T Consensus 82 ~~l~~~~~~l~~~--~~~~~~~lvGHSmGg~~a~~~~~~~~~~~~~~~v~~lv~l~~p~~g~~~----~-~~-------- 146 (250)
T 3lp5_A 82 VWLNTAFKALVKT--YHFNHFYALGHSNGGLIWTLFLERYLKESPKVHIDRLMTIASPYNMEST----S-TT-------- 146 (250)
T ss_dssp HHHHHHHHHHHTT--SCCSEEEEEEETHHHHHHHHHHHHTGGGSTTCEEEEEEEESCCTTTTCC----C-SS--------
T ss_pred HHHHHHHHHHHHH--cCCCCeEEEEECHhHHHHHHHHHHccccccchhhCEEEEECCCCCcccc----c-cc--------
Confidence 6777788888776 4568999999999999999988876 6789999988775532110 0 00
Q ss_pred CccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeC----CCCCCChHHHHHHHHHCC
Q 003886 728 SKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA----QDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~----~D~~vp~~~~~~l~~~l~ 786 (789)
... .....+.+. ...+.+ ++|+|+|+|+ .|..||...+..+...++
T Consensus 147 ---------~~~-~~~~~l~~~--~~~lp~-~vpvl~I~G~~~~~~Dg~Vp~~sa~~l~~l~~ 196 (250)
T 3lp5_A 147 ---------AKT-SMFKELYRY--RTGLPE-SLTVYSIAGTENYTSDGTVPYNSVNYGKYIFQ 196 (250)
T ss_dssp ---------CCC-HHHHHHHHT--GGGSCT-TCEEEEEECCCCCCTTTBCCHHHHTTHHHHHT
T ss_pred ---------ccC-HHHHHHHhc--cccCCC-CceEEEEEecCCCCCCceeeHHHHHHHHHHhc
Confidence 000 111222211 122333 6899999999 999999999977665554
|
| >2wj6_A 1H-3-hydroxy-4-oxoquinaldine 2,4-dioxygenase; oxidoreductase, alpha/beta hydrolase; HET: ZZ8 SRT; 2.00A {Arthrobacter nitroguajacolicus} PDB: 2wj4_A* 2wj3_A* 2wm2_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-10 Score=118.66 Aligned_cols=116 Identities=20% Similarity=0.275 Sum_probs=83.3
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~ 651 (789)
+|..++.... +. +...|.||++||.+.+ ...|......|+ .+|.|+++|+|| +|.+... . ....
T Consensus 12 ~g~~l~y~~~-~~----G~~~p~vvllHG~~~~--~~~w~~~~~~L~-~~~rvia~DlrG---hG~S~~~--~---~~~~ 75 (276)
T 2wj6_A 12 FDNKLSYIDN-QR----DTDGPAILLLPGWCHD--HRVYKYLIQELD-ADFRVIVPNWRG---HGLSPSE--V---PDFG 75 (276)
T ss_dssp TTEEEEEEEC-CC----CCSSCEEEEECCTTCC--GGGGHHHHHHHT-TTSCEEEECCTT---CSSSCCC--C---CCCC
T ss_pred CCeEEEEEEe-cC----CCCCCeEEEECCCCCc--HHHHHHHHHHHh-cCCEEEEeCCCC---CCCCCCC--C---CCCC
Confidence 5666654332 11 2234889999997664 567877777776 469999999998 6665421 1 1234
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC-CCceeEEEEeCCc
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA-PDKFVAAAARNPL 705 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~-p~~~~a~v~~~pv 705 (789)
++++.+.+..+++. ++.+++.|+|||+||.+++.++.++ |++++++|+.++.
T Consensus 76 ~~~~a~dl~~ll~~--l~~~~~~lvGhSmGG~va~~~A~~~~P~rv~~lvl~~~~ 128 (276)
T 2wj6_A 76 YQEQVKDALEILDQ--LGVETFLPVSHSHGGWVLVELLEQAGPERAPRGIIMDWL 128 (276)
T ss_dssp HHHHHHHHHHHHHH--HTCCSEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEESCC
T ss_pred HHHHHHHHHHHHHH--hCCCceEEEEECHHHHHHHHHHHHhCHHhhceEEEeccc
Confidence 55665555555554 3457899999999999999999999 9999999998763
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-08 Score=109.28 Aligned_cols=244 Identities=11% Similarity=0.090 Sum_probs=142.0
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCc-cceeecCCcceecccEEEEeCCC--CCeEEEEecCCCCCC
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS-VTFQWAPFPVEMTGASAVVPSPS--GSKLLVVRNPENESP 179 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~lt~~~~~~~~~~~~~~~~SPd--G~~la~~~~~~~~~~ 179 (789)
.++|||++++... ..+.+.++++.....+. ..+.... ..+...+|||+ |++|+.....+
T Consensus 18 ~~s~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~~~dg---- 79 (379)
T 3jrp_A 18 VLDYYGKRLATCS---------SDKTIKIFEVEGETHKLIDTLTGHE-----GPVWRVDWAHPKFGTILASCSYDG---- 79 (379)
T ss_dssp EECSSSSEEEEEE---------TTSCEEEEEEETTEEEEEEEECCCS-----SCEEEEEECCGGGCSEEEEEETTS----
T ss_pred EEcCCCCEEEEEE---------CCCcEEEEecCCCcceeeeEecCCC-----CcEEEEEeCCCCCCCEEEEeccCC----
Confidence 4579999887542 12345555553222221 2222222 45888999988 89988876543
Q ss_pred eEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCC--CCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCC
Q 003886 180 IQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 255 (789)
Q Consensus 180 ~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpD--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (789)
.+.+| ..++...+.... ...+.+ ..+.|+|+ ++.|+..+.+
T Consensus 80 -~v~iwd~~~~~~~~~~~~~-~~~~~v------~~~~~~~~~~~~~l~~~~~d--------------------------- 124 (379)
T 3jrp_A 80 -KVLIWKEENGRWSQIAVHA-VHSASV------NSVQWAPHEYGPLLLVASSD--------------------------- 124 (379)
T ss_dssp -CEEEEEEETTEEEEEEEEC-CCSSCE------EEEEECCGGGCSEEEEEETT---------------------------
T ss_pred -EEEEEEcCCCceeEeeeec-CCCcce------EEEEeCCCCCCCEEEEecCC---------------------------
Confidence 34555 334322333222 122223 78999999 8888876443
Q ss_pred cceeeCCcccccCCccCceEEEEEccCCce---EeccCCCCCCccceEEEee-------------CCCCCccEEEEEeec
Q 003886 256 QGDWEEDWGETYAGKRQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAP-------------LNEGLHQYLVFVGWS 319 (789)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~---~~l~~~~~~~~~~~~~wSP-------------Dg~~~~~~l~f~~~~ 319 (789)
..|.+||+.++.. ..+ ......+..+.|+| |++. |+..+
T Consensus 125 -----------------~~i~v~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~-- 179 (379)
T 3jrp_A 125 -----------------GKVSVVEFKENGTTSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRK----FVTGG-- 179 (379)
T ss_dssp -----------------SEEEEEECCTTSCCCEEEE--ECCTTCEEEEEECCCC----------CTTCE----EEEEE--
T ss_pred -----------------CcEEEEecCCCCceeeEEe--cCCCCceEEEEEcCccccccccccCCCCCCE----EEEEe--
Confidence 5688899887632 222 23344677899999 5776 66554
Q ss_pred CCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCC---CCEEEEEecCCCCC
Q 003886 320 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPD---GKFLVFLSAKSSVD 396 (789)
Q Consensus 320 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpD---G~~la~~s~~~~~~ 396 (789)
.+..|+++|+.... ........+..+...+..++|+|| |+.|+..+.+.
T Consensus 180 -------------~dg~i~i~d~~~~~------------~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg--- 231 (379)
T 3jrp_A 180 -------------ADNLVKIWKYNSDA------------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR--- 231 (379)
T ss_dssp -------------TTSCEEEEEEETTT------------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS---
T ss_pred -------------CCCeEEEEEecCCC------------cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC---
Confidence 22357777772100 000122355566777889999999 78887766543
Q ss_pred CCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003886 397 SGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 397 ~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
.|.+||+.++...... .+.. . .. ....+..+.|+|||+.|+ ++..++...+|.++.
T Consensus 232 --------~i~iwd~~~~~~~~~~----~~~~---~---~~----~~~~v~~~~~s~~g~~l~-~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 232 --------TCIIWTQDNEQGPWKK----TLLK---E---EK----FPDVLWRASWSLSGNVLA-LSGGDNKVTLWKENL 287 (379)
T ss_dssp --------CEEEEEESSTTSCCEE----EESS---S---SC----CSSCEEEEEECSSSCCEE-EEESSSSEEEEEEEE
T ss_pred --------EEEEEeCCCCCcccee----eeec---c---cc----CCCcEEEEEEcCCCCEEE-EecCCCcEEEEeCCC
Confidence 4889998775421100 0000 0 00 011344678999999664 445577788887774
|
| >1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H; HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.5e-11 Score=136.48 Aligned_cols=135 Identities=18% Similarity=0.174 Sum_probs=92.3
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch-hhHHHHHHH-HHCCcEEEEEcCC-CCCCCCchhhccCCCC
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFL-SSVGYSLLIVNYR-GSLGFGEEALQSLPGK 646 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~~~~~~~l-a~~Gy~V~~~d~r-Gs~G~G~~~~~~~~~~ 646 (789)
+.|++.+ .++.|.+....++.|+||++|||+...... .+....... ...|++|+.+||| |..||+........+
T Consensus 82 ~edcl~l--~v~~P~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~~~~~~g~vvv~~nYRlg~~Gf~~~~~~~~~~- 158 (522)
T 1ukc_A 82 SEDCLFI--NVFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQNG- 158 (522)
T ss_dssp ESCCCEE--EEEEETTCCTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHHSS-
T ss_pred CCcCCEE--EEEECCCCCCCCCCCEEEEECCCccccCCccccCcHHHHHhcCCcEEEEEecccccccccccchhccccC-
Confidence 3455444 577887544556789999999998654332 222211111 2569999999999 444555432211111
Q ss_pred CCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhC----CCceeEEEEeCCccc
Q 003886 647 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA----PDKFVAAAARNPLCN 707 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~----p~~~~a~v~~~pv~~ 707 (789)
.+...+.|+.++++|+.++. ..|++||+|+|+|.||+++..++... +.+|+++|+.+|...
T Consensus 159 ~~n~gl~D~~~al~wv~~ni~~fggDp~~v~i~G~SaGg~~v~~~l~~~~~~~~~lf~~~i~~sg~~~ 226 (522)
T 1ukc_A 159 DLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFWP 226 (522)
T ss_dssp CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCCC
T ss_pred CCChhHHHHHHHHHHHHHHHHHcCCCchhEEEEEEChHHHHHHHHHhCCCccccccchhhhhcCCCcC
Confidence 22344899999999998863 36999999999999999888776643 568999999999753
|
| >3ds8_A LIN2722 protein; unkonwn function, structural genomics, PSI, MCSG, P structure initiative; 1.80A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.8e-10 Score=114.20 Aligned_cols=174 Identities=16% Similarity=0.120 Sum_probs=101.8
Q ss_pred cEEEEEcCCCCCCCchhhHHHHHHHHHCCcE---E----------EEEcCCCCCCCCchhhc-cC-CCCCC-cccHHHHH
Q 003886 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYS---L----------LIVNYRGSLGFGEEALQ-SL-PGKVG-SQDVNDVL 656 (789)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~---V----------~~~d~rGs~G~G~~~~~-~~-~~~~~-~~~~~D~~ 656 (789)
+.||++||.+++ ...|......|+++|+. + +.+|.++..+.+..... .. ..... ....+|+.
T Consensus 4 ~pvvllHG~~~~--~~~~~~l~~~L~~~~~~~~~~~~~~v~~~G~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~ 81 (254)
T 3ds8_A 4 IPIILIHGSGGN--ASSLDKMADQLMNEYRSSNEALTMTVNSEGKIKFEGKLTKDAKRPIIKFGFEQNQATPDDWSKWLK 81 (254)
T ss_dssp CCEEEECCTTCC--TTTTHHHHHHHHHTTCCCCCEEEEEEETTTEEEEESCCCTTCSSCEEEEEESSTTSCHHHHHHHHH
T ss_pred CCEEEECCCCCC--cchHHHHHHHHHHhcCCCceEEEEEEcCCCeEEEEEEeccCCCCCEEEEEecCCCCCHHHHHHHHH
Confidence 457899997664 55688888899988753 3 33332211110110000 00 00111 11245666
Q ss_pred HHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCC-----ceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccc
Q 003886 657 TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----KFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 731 (789)
Q Consensus 657 ~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~-----~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (789)
++++.+.++ .+.+++.++||||||.+++.++.++|+ +++++|+.++..+......... .+.
T Consensus 82 ~~i~~l~~~--~~~~~~~lvGHS~Gg~ia~~~~~~~~~~~~~~~v~~lv~i~~p~~g~~~~~~~~--------~~~---- 147 (254)
T 3ds8_A 82 IAMEDLKSR--YGFTQMDGVGHSNGGLALTYYAEDYAGDKTVPTLRKLVAIGSPFNDLDPNDNGM--------DLS---- 147 (254)
T ss_dssp HHHHHHHHH--HCCSEEEEEEETHHHHHHHHHHHHSTTCTTSCEEEEEEEESCCTTCSCHHHHCS--------CTT----
T ss_pred HHHHHHHHH--hCCCceEEEEECccHHHHHHHHHHccCCccccceeeEEEEcCCcCccccccccc--------ccc----
Confidence 667887776 234789999999999999999999988 8999999998654321110000 000
Q ss_pred cccCCCCC-hhhHHHHHhcCccccCCCCCCCEEEEEeC------CCCCCChHHHHHHHHHCCC
Q 003886 732 DSFTESPS-VEDLTRFHSKSPISHISKVKTPTIFLLGA------QDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 732 ~~~~~~~~-~~~~~~~~~~sp~~~~~~i~~P~Lii~G~------~D~~vp~~~~~~l~~~l~~ 787 (789)
+.+.+. ......+... ...+.+ ++|+|+|||+ .|.+||+..+..+...+++
T Consensus 148 --~~~~p~~~~~~~~~~~~--~~~~~~-~~~vl~I~G~~~~~~~~Dg~Vp~~ss~~l~~~~~~ 205 (254)
T 3ds8_A 148 --FKKLPNSTPQMDYFIKN--QTEVSP-DLEVLAIAGELSEDNPTDGIVPTISSLATRLFMPG 205 (254)
T ss_dssp --CSSCSSCCHHHHHHHHT--GGGSCT-TCEEEEEEEESBTTBCBCSSSBHHHHTGGGGTSBT
T ss_pred --cccCCcchHHHHHHHHH--HhhCCC-CcEEEEEEecCCCCCCCCcEeeHHHHHHHHHHhhc
Confidence 001111 1111111111 122333 6899999999 9999999999888766653
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-08 Score=106.26 Aligned_cols=271 Identities=14% Similarity=0.093 Sum_probs=154.3
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
+.+...+| |+|++|+.....+ .+.+| ..++........ .+.+ ..+.|+||++.|+..+.+...
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~dg-----~v~vw~~~~~~~~~~~~~~---~~~v------~~~~~~~~~~~l~~~~~dg~i 83 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSRDG-----TVRLWSKDDQWLGTVVYTG---QGFL------NSVCYDSEKELLLFGGKDTMI 83 (313)
T ss_dssp SCEEEEEE-EETTEEEEEETTS-----EEEEEEESSSEEEEEEEEC---SSCE------EEEEEETTTTEEEEEETTSCE
T ss_pred CCcEEEEe-cCCCEEEEEEcCC-----cEEEEECCCCEEEEEeecC---CccE------EEEEECCCCCEEEEecCCCeE
Confidence 45778899 9999998876553 45666 333333333321 1222 789999999999988766532
Q ss_pred CCCCccCCCC---CCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEee-CCC
Q 003886 232 SKPTFSLGST---KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP-LNE 307 (789)
Q Consensus 232 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP-Dg~ 307 (789)
. .|..... ........+........| +....+++..+..|.+|| .......+ ......+..+.|+| +++
T Consensus 84 ~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d-~~~~~~~~--~~~~~~v~~~~~~~~~~~ 156 (313)
T 3odt_A 84 N--GVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK-EGSLVYNL--QAHNASVWDAKVVSFSEN 156 (313)
T ss_dssp E--EEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE-TTEEEEEE--ECCSSCEEEEEEEETTTT
T ss_pred E--EEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc-CCcEEEec--ccCCCceeEEEEccCCCC
Confidence 2 1221111 111112222222223344 223444555678899999 23333334 23344677889999 777
Q ss_pred CCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCC-CCCccCcceecCCCCEE
Q 003886 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFL 386 (789)
Q Consensus 308 ~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~l 386 (789)
. |+..+ ....|.++|. . .....+.. +...+....|+|+|+ |
T Consensus 157 ~----l~~~~---------------~d~~i~i~d~-----------------~-~~~~~~~~~~~~~i~~~~~~~~~~-~ 198 (313)
T 3odt_A 157 K----FLTAS---------------ADKTIKLWQN-----------------D-KVIKTFSGIHNDVVRHLAVVDDGH-F 198 (313)
T ss_dssp E----EEEEE---------------TTSCEEEEET-----------------T-EEEEEECSSCSSCEEEEEEEETTE-E
T ss_pred E----EEEEE---------------CCCCEEEEec-----------------C-ceEEEEeccCcccEEEEEEcCCCe-E
Confidence 5 55554 2235777774 2 23334443 566688899999998 6
Q ss_pred EEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCC
Q 003886 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (789)
Q Consensus 387 a~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (789)
+..+.+ ..|++||+.+++....... ....+..+.|+|||+ | +++..++
T Consensus 199 ~~~~~d-----------g~i~i~d~~~~~~~~~~~~-------------------~~~~i~~~~~~~~~~-l-~~~~~dg 246 (313)
T 3odt_A 199 ISCSND-----------GLIKLVDMHTGDVLRTYEG-------------------HESFVYCIKLLPNGD-I-VSCGEDR 246 (313)
T ss_dssp EEEETT-----------SEEEEEETTTCCEEEEEEC-------------------CSSCEEEEEECTTSC-E-EEEETTS
T ss_pred EEccCC-----------CeEEEEECCchhhhhhhhc-------------------CCceEEEEEEecCCC-E-EEEecCC
Confidence 555433 3699999877543211000 001244678999994 4 4444455
Q ss_pred eEEEEEEECCCCcEEEecCCC-CCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 467 SQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 467 ~~~l~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
. |..+|+.+++.......+ ..+....+++++. ++. .+... .+.+.++.++
T Consensus 247 ~--v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~-~~~dg---~i~iw~~~~~ 297 (313)
T 3odt_A 247 T--VRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIV-GSSDN---LVRIFSQEKS 297 (313)
T ss_dssp E--EEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEE-EETTS---CEEEEESCGG
T ss_pred E--EEEEECCCCceeEEEeccCceEEEEEEccCCC-EEE-EeCCC---cEEEEeCCCC
Confidence 4 555678788766544333 3455567888887 333 33333 3677776543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.8e-09 Score=121.79 Aligned_cols=242 Identities=11% Similarity=0.064 Sum_probs=146.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCC----ceeEEEecCCCcccc-ccCCCcccceeecC--CCCEEEE
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQS----QLEKEFHVPQTVHGS-VYADGWFEGISWNS--DETLIAY 224 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~----~~~~~~~~~~~~~g~-v~~d~~~~~~~wSp--Dg~~la~ 224 (789)
+.+...+|||||++||+..+. ...+| .++ +..+.+.. ..+. | ..++||| ||+.||.
T Consensus 19 ~~v~~~~~spdg~~l~~~~~~------~v~v~~~~~~~~~~~~~~~~~~---h~~~~v------~~~~~sp~~~~~~l~s 83 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPCGK------SAFVRCLDDGDSKVPPVVQFTG---HGSSVV------TTVKFSPIKGSQYLCS 83 (615)
T ss_dssp TCCCCCEEETTTTEEEEEETT------EEEEEECCSSCCSSCSEEEECT---TTTSCE------EEEEECSSTTCCEEEE
T ss_pred CceeEEEECCCCCEEEEecCC------eEEEEECCCCCCccccceEEec---CCCceE------EEEEECcCCCCCEEEE
Confidence 457789999999999998732 34555 333 33333321 1222 3 7899999 9999987
Q ss_pred EeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCC------ceEeccC-CCCCCcc
Q 003886 225 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG------EVQAVKG-IPKSLSV 297 (789)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g------~~~~l~~-~~~~~~~ 297 (789)
...+ ..|.+||+.++ +...+.. ......+
T Consensus 84 ~~~d--------------------------------------------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v 119 (615)
T 1pgu_A 84 GDES--------------------------------------------GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPI 119 (615)
T ss_dssp EETT--------------------------------------------SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCE
T ss_pred ecCC--------------------------------------------CEEEEEeCCCCcccccccccccchhhcccccE
Confidence 6432 56888998655 2222110 1234467
Q ss_pred ceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcc
Q 003886 298 GQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFP 377 (789)
Q Consensus 298 ~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p 377 (789)
..++|+|||+. |+..+...+ ....|+.+|. +.....+..+...+...
T Consensus 120 ~~~~~s~~~~~----l~~~~~~~~-----------~~~~v~~~d~------------------~~~~~~~~~~~~~v~~~ 166 (615)
T 1pgu_A 120 SDISWDFEGRR----LCVVGEGRD-----------NFGVFISWDS------------------GNSLGEVSGHSQRINAC 166 (615)
T ss_dssp EEEEECTTSSE----EEEEECCSS-----------CSEEEEETTT------------------CCEEEECCSCSSCEEEE
T ss_pred EEEEEeCCCCE----EEEeccCCC-----------CccEEEEEEC------------------CCcceeeecCCccEEEE
Confidence 89999999998 887763321 1235777763 34456677777788899
Q ss_pred eecCCCCE-EEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccC-C
Q 003886 378 RFSPDGKF-LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD-G 455 (789)
Q Consensus 378 ~~SpDG~~-la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~D-g 455 (789)
+|+|||+. |+..+.+ ..+.+||+.++..... ..... .. + ..+..+.|+|| |
T Consensus 167 ~~~~~~~~~l~~~~~d-----------~~v~vwd~~~~~~~~~----------~~~~~-~~--~---~~v~~~~~~~~~~ 219 (615)
T 1pgu_A 167 HLKQSRPMRSMTVGDD-----------GSVVFYQGPPFKFSAS----------DRTHH-KQ--G---SFVRDVEFSPDSG 219 (615)
T ss_dssp EECSSSSCEEEEEETT-----------TEEEEEETTTBEEEEE----------ECSSS-CT--T---CCEEEEEECSTTC
T ss_pred EECCCCCcEEEEEeCC-----------CcEEEEeCCCcceeee----------ecccC-CC--C---ceEEEEEECCCCC
Confidence 99999984 5544433 3689999766433110 00000 00 0 02346789999 8
Q ss_pred CEEEEEEEeCCeEEEEEEECCCCcEEEec-----CCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 456 CTMLLSSIWGSSQVIISVNVSSGELLRIT-----PAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 456 ~~l~~~~~~~~~~~l~~~dl~tg~~~~lt-----~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
+.|+ ++..++. |..+|+.+++..... .....+....++ +++.++....+ ..+.+.++..
T Consensus 220 ~~l~-~~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d----~~i~~wd~~~ 283 (615)
T 1pgu_A 220 EFVI-TVGSDRK--ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD----ATIRVWDVTT 283 (615)
T ss_dssp CEEE-EEETTCC--EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT----SEEEEEETTT
T ss_pred CEEE-EEeCCCe--EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCC----CcEEEEECCC
Confidence 8654 4444444 555688788776655 233344455677 77766655433 2366666543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-08 Score=105.63 Aligned_cols=244 Identities=12% Similarity=0.126 Sum_probs=139.5
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCCCC-ccceeecCCcceecccEEEEeCCC--CCeEEEEecCCCCCCe
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENEN-SVTFQWAPFPVEMTGASAVVPSPS--GSKLLVVRNPENESPI 180 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~lt~~~~~~~~~~~~~~~~SPd--G~~la~~~~~~~~~~~ 180 (789)
.+|||++++-.. ..+.+.++++.....+ ...+.... +.+...+|+|+ |+.||..+.++
T Consensus 17 ~s~~g~~las~s---------~D~~v~iw~~~~~~~~~~~~l~gH~-----~~V~~v~~s~~~~g~~l~s~s~D~----- 77 (297)
T 2pm7_B 17 MDYYGKRMATCS---------SDKTIKIFEVEGETHKLIDTLTGHE-----GPVWRVDWAHPKFGTILASCSYDG----- 77 (297)
T ss_dssp ECTTSSEEEEEE---------TTSCEEEEEBCSSCBCCCEEECCCS-----SCEEEEEECCGGGCSEEEEEETTT-----
T ss_pred ECCCCCEEEEEe---------CCCEEEEEecCCCCcEEEEEEcccc-----CCeEEEEecCCCcCCEEEEEcCCC-----
Confidence 469999876432 2345666666432222 22333332 45888999974 88888877654
Q ss_pred EEEEec--CCceeEEEecCCCccccccCCCcccceeecCC--CCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCc
Q 003886 181 QFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ 256 (789)
Q Consensus 181 ~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpD--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (789)
...+|+ .++...+.... ...+.| ..+.|+|+ |+.|+..+.+
T Consensus 78 ~v~iWd~~~~~~~~~~~~~-~h~~~v------~~v~~~p~~~g~~l~s~s~d---------------------------- 122 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIAVHA-VHSASV------NSVQWAPHEYGPMLLVASSD---------------------------- 122 (297)
T ss_dssp EEEEEEBSSSCBCCCEEEC-CCSSCE------EEEEECCGGGCSEEEEEETT----------------------------
T ss_pred EEEEEEcCCCceEEEEEee-cCCCce------eEEEeCcCCCCcEEEEEECC----------------------------
Confidence 566773 33222222211 111222 78999998 7887765433
Q ss_pred ceeeCCcccccCCccCceEEEEEccCCc---eEeccCCCCCCccceEEEeeCC-------------CCCccEEEEEeecC
Q 003886 257 GDWEEDWGETYAGKRQPSLFVININSGE---VQAVKGIPKSLSVGQVVWAPLN-------------EGLHQYLVFVGWSS 320 (789)
Q Consensus 257 ~~~~~d~g~~~~~~~~~~l~v~d~~~g~---~~~l~~~~~~~~~~~~~wSPDg-------------~~~~~~l~f~~~~~ 320 (789)
..|.+||+.++. ...+ ......+..+.|+|++ +. |+..+
T Consensus 123 ----------------~~v~~wd~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~----l~sgs--- 177 (297)
T 2pm7_B 123 ----------------GKVSVVEFKENGTTSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRK----FVTGG--- 177 (297)
T ss_dssp ----------------SEEEEEEBCSSSCBCCEEE--ECCSSCEEEEEECCCC------------CCE----EEEEE---
T ss_pred ----------------CcEEEEEecCCCceeeeee--ecccCccceEeecCCcccccccCCCCCCcce----EEEEc---
Confidence 567888887653 2222 1233457788999984 33 44443
Q ss_pred CceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC----CeeecCCCCCccCcceecCCC---CEEEEEecCC
Q 003886 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL----PVVNLTESISSAFFPRFSPDG---KFLVFLSAKS 393 (789)
Q Consensus 321 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~Lt~~~~~~~~p~~SpDG---~~la~~s~~~ 393 (789)
.+..|.++|+. ... ....|..+...+...+||||| ++|+..+.+.
T Consensus 178 ------------~D~~v~lwd~~----------------~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~ 229 (297)
T 2pm7_B 178 ------------ADNLVKIWKYN----------------SDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR 229 (297)
T ss_dssp ------------TTSCEEEEEEE----------------TTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred ------------CCCcEEEEEEc----------------CCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC
Confidence 22356666662 111 234566777788999999996 6777666543
Q ss_pred CCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 394 ~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
.+.+||+.+...... ..+. . ...++ ..+..+.|+|||+.| +++..++...||..
T Consensus 230 -----------~v~iWd~~~~~~~~~----~~~~---~---~~~~~----~~v~~~~~s~~g~~l-as~~~D~~v~lw~~ 283 (297)
T 2pm7_B 230 -----------TCIIWTQDNEQGPWK----KTLL---K---EEKFP----DVLWRASWSLSGNVL-ALSGGDNKVTLWKE 283 (297)
T ss_dssp -----------CEEEEEESSTTSCCE----EEES---S---SSCCS----SCEEEEEECSSSCCE-EEEETTSCEEEEEE
T ss_pred -----------cEEEEEeCCCCCccc----eeee---e---cccCC----CcEEEEEECCCCCEE-EEEcCCCcEEEEEE
Confidence 488888765321100 0000 0 00111 124467899999855 56667788888887
Q ss_pred ECCCCcEE
Q 003886 474 NVSSGELL 481 (789)
Q Consensus 474 dl~tg~~~ 481 (789)
+. .|+..
T Consensus 284 ~~-~g~w~ 290 (297)
T 2pm7_B 284 NL-EGKWE 290 (297)
T ss_dssp CT-TSCEE
T ss_pred CC-CCcEE
Confidence 65 34443
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.07 E-value=8.6e-08 Score=102.93 Aligned_cols=122 Identities=8% Similarity=-0.012 Sum_probs=71.7
Q ss_pred cceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeecc--CCCCCccccccCCCCCcccc
Q 003886 376 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA--EGDCFPGLYSSSILSNPWLS 453 (789)
Q Consensus 376 ~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~--~~~~f~g~~~~~~~~~~ws~ 453 (789)
...++|||+.++|.+.. ..++++|+.++....+ ....+.... .....| .....+.++|
T Consensus 204 ~~~~~~~g~~~~~~~~~-----------~~v~v~d~~~~~~~~~-----~~~~~~~~~~~~~~~~p----~g~~~~a~~~ 263 (361)
T 2oiz_A 204 FIAPALDKDKAHFVSYY-----------GNVYSADFSGDEVKVD-----GPWSLLNDEDKAKNWVP----GGYNLVGLHR 263 (361)
T ss_dssp CSCCEECSSEEEEEBTT-----------SEEEEEECSSSSCEEE-----EEEESCCHHHHHTTCEE----CCSSCEEEET
T ss_pred EEEecccCCEEEEEeCC-----------CeEEEEEecCCCceec-----ccccccCcccccccccc----CCeeEEEEec
Confidence 34558999998887743 2599999876543211 000000000 000001 1122357899
Q ss_pred CCCEEEEEEEeC--------CeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 454 DGCTMLLSSIWG--------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 454 Dg~~l~~~~~~~--------~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
|++++|+..... ....++.+|+.++++..-.+... .....+++||++|+. ... ..+.++|..+.
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v-~n~----~~v~v~D~~t~ 335 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLT-LDG----GNVNVYDISQP 335 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEE-ECS----SCEEEEECSSS
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEE-eCC----CeEEEEECCCC
Confidence 999998765411 23579999999988765444433 556789999996654 332 55888886543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.3e-07 Score=102.55 Aligned_cols=299 Identities=11% Similarity=0.052 Sum_probs=157.5
Q ss_pred CCCceEEEEEeechhhcccceeEEEEEEeecCCCCc-cceeecCCcceecccEEEEeCCCCCeEEEEecC------CCCC
Q 003886 106 GNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS-VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNP------ENES 178 (789)
Q Consensus 106 pdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~------~~~~ 178 (789)
+|++++ |+.++.. .+.. ..+..++..+ .+. ..+..+. .. .+++||||++|+..... +...
T Consensus 82 ~~~~~v-yV~n~~~--~~~~-~~VsVID~~t--~~vv~~I~vG~------~P-gia~SpDgk~lyVan~~~~~~~~G~~~ 148 (426)
T 3c75_H 82 PDARRV-YIQDPAH--FAAI-TQQFVIDGST--GRILGMTDGGF------LP-HPVAAEDGSFFAQASTVFERIARGKRT 148 (426)
T ss_dssp CCTTEE-EEEECTT--TCSS-EEEEEEETTT--TEEEEEEEECS------SC-EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred CCCCEE-EEECCCc--CCCC-CeEEEEECCC--CEEEEEEECCC------CC-ceEECCCCCEEEEEeccccccccCCCC
Confidence 788776 6665431 0001 5677766522 222 2222222 23 78999999998776421 0012
Q ss_pred CeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcc
Q 003886 179 PIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQG 257 (789)
Q Consensus 179 ~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (789)
..+..++ ...+..+.+.++....- -....-.++.+||||++|+.....
T Consensus 149 ~~VsviD~~t~~vv~~I~v~g~~r~--~~g~~P~~~~~spDGk~lyV~n~~----------------------------- 197 (426)
T 3c75_H 149 DYVEVFDPVTFLPIADIELPDAPRF--LVGTYQWMNALTPDNKNLLFYQFS----------------------------- 197 (426)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCC--CBSCCGGGSEECTTSSEEEEEECS-----------------------------
T ss_pred CEEEEEECCCCcEEEEEECCCcccc--ccCCCcceEEEcCCCCEEEEEecC-----------------------------
Confidence 2466777 56666666665411000 000001588999999987665321
Q ss_pred eeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcce
Q 003886 258 DWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 337 (789)
Q Consensus 258 ~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l 337 (789)
....|.++|+.++++..-...++ .....|+|+. .++.... ...+
T Consensus 198 -------------~~~~VsVID~~t~kvv~~I~v~g-----~~~~~p~g~~----~~v~~~~--------------dG~~ 241 (426)
T 3c75_H 198 -------------PAPAVGVVDLEGKTFDRMLDVPD-----CYHIFPASPT----VFYMNCR--------------DGSL 241 (426)
T ss_dssp -------------SSCEEEEEETTTTEEEEEEECCS-----EEEEEEEETT----EEEEEET--------------TSSE
T ss_pred -------------CCCeEEEEECCCCeEEEEEEcCC-----ceeeccCCCc----EEEEEcC--------------CCCE
Confidence 13679999999988754311211 1344566655 4333211 1234
Q ss_pred EEEecccccchhhhhhhhcCCCCCCCee-e----cCCCCC-ccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeec
Q 003886 338 YAVRVSLYKSEASELELKESSSEDLPVV-N----LTESIS-SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDW 411 (789)
Q Consensus 338 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~----Lt~~~~-~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~ 411 (789)
..+++ .+++.. . +.-... ....+.|++||+.++|.+.. ..++++|+
T Consensus 242 ~~V~~-----------------~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~-----------g~V~ViD~ 293 (426)
T 3c75_H 242 ARVDF-----------------ADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYT-----------GKIFQADL 293 (426)
T ss_dssp EEEEC-----------------CTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTT-----------SEEEEEEE
T ss_pred EEEEC-----------------CCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCC-----------CcEEEEec
Confidence 45554 122211 1 111111 12346789999999988742 26999998
Q ss_pred CCCCCCCcccceeeEEeeeeccC-C-CCCccccccCCCCCccccCCCEEEEEEEeC-------CeEEEEEEECCCCcEEE
Q 003886 412 PTNGNFSSLEKIVDVIPVVQCAE-G-DCFPGLYSSSILSNPWLSDGCTMLLSSIWG-------SSQVIISVNVSSGELLR 482 (789)
Q Consensus 412 ~~~~~~~~t~~~~~v~~~~~~~~-~-~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~-------~~~~l~~~dl~tg~~~~ 482 (789)
.++....+. . ..+..... . ...| .....+.+++||+++|+..... +...|+.+|+.+.++..
T Consensus 294 ~~~~~~v~~-~----~~~~~~~~i~~g~~p----~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~ 364 (426)
T 3c75_H 294 TAEGATFRA-P----IEALTEAERADDWRP----GGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERIN 364 (426)
T ss_dssp CSSCEEECC-C----EESSCTTTGGGTEEE----CSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred cCCceEEee-e----eeecccccccccccc----CCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEE
Confidence 664432110 0 00000000 0 0001 1122457899999998876532 24679999999988664
Q ss_pred ecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 483 lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
-.+.........+++||+.++|+.... -..+.++|..+.
T Consensus 365 ~I~vg~~P~gia~spDg~~~lyv~n~~--s~~VsVID~~t~ 403 (426)
T 3c75_H 365 KIELGHEIDSINVSQDAEPLLYALSAG--TQTLHIYDAATG 403 (426)
T ss_dssp EEEEEEEECEEEECCSSSCEEEEEETT--TTEEEEEETTTC
T ss_pred EEECCCCcCeEEEccCCCEEEEEEcCC--CCeEEEEECCCC
Confidence 333222234468899999444444421 234888886643
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.6e-08 Score=103.56 Aligned_cols=240 Identities=15% Similarity=0.189 Sum_probs=129.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc------eeEEEecCCCccccccCCCcccceeecCCCCEEEEEee
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ------LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~ 227 (789)
..+...+|||+|+.||..+..+ ...+|+... ..+....-.+..+.| ..++|||||+.||..+.
T Consensus 59 ~~v~~v~~sp~~~~las~s~D~-----~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V------~~v~~sp~g~~las~s~ 127 (330)
T 2hes_X 59 KAIRSVAWRPHTSLLAAGSFDS-----TVSIWAKEESADRTFEMDLLAIIEGHENEV------KGVAWSNDGYYLATCSR 127 (330)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEEC-------CCCEEEEEEC----CE------EEEEECTTSCEEEEEET
T ss_pred CCEEEEEECCCCCEEEEEeCCC-----cEEEEEcccCcCccccceeEEEEcCCCCcE------EEEEECCCCCEEEEEeC
Confidence 4588899999999998876543 355662110 111111111222333 78999999999987654
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEcc-CCc----eEeccCCCCCCccceEEE
Q 003886 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGE----VQAVKGIPKSLSVGQVVW 302 (789)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~g~----~~~l~~~~~~~~~~~~~w 302 (789)
+ ..|.+||+. +++ ...+ ......+..+.|
T Consensus 128 D--------------------------------------------~~v~iwd~~~~~~~~~~~~~~--~~h~~~v~~v~~ 161 (330)
T 2hes_X 128 D--------------------------------------------KSVWIWETDESGEEYECISVL--QEHSQDVKHVIW 161 (330)
T ss_dssp T--------------------------------------------SCEEEEECCTTCCCCEEEEEE--CCCSSCEEEEEE
T ss_pred C--------------------------------------------CEEEEEeccCCCCCeEEEEEe--ccCCCceEEEEE
Confidence 3 467888884 322 1223 223346788999
Q ss_pred eeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCC-CCeeecCCCCCccCcceecC
Q 003886 303 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESISSAFFPRFSP 381 (789)
Q Consensus 303 SPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~Lt~~~~~~~~p~~Sp 381 (789)
+||++. |+..+. +..|.++|+.. .. .....+..+...+....|+|
T Consensus 162 ~p~~~~----l~s~s~---------------D~~i~iW~~~~---------------~~~~~~~~~~~h~~~v~~~~~~~ 207 (330)
T 2hes_X 162 HPSEAL----LASSSY---------------DDTVRIWKDYD---------------DDWECVAVLNGHEGTVWSSDFDK 207 (330)
T ss_dssp CSSSSE----EEEEET---------------TSCEEEEEEET---------------TEEEEEEEECCCSSCEEEEEECC
T ss_pred CCCCCE----EEEEcC---------------CCeEEEEECCC---------------CCeeEEEEccCCCCcEEEEEecC
Confidence 999987 666652 22466666510 11 23456667777788899999
Q ss_pred C--CCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEE
Q 003886 382 D--GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 459 (789)
Q Consensus 382 D--G~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~ 459 (789)
+ +..|+..+.+. .|.+||+.++.... ......... +++.....+..+.|++++ ++
T Consensus 208 ~~~~~~l~s~s~D~-----------~v~iw~~~~~~~~~--~~~~~~~~~--------~~~~h~~~v~~v~~s~~~--~l 264 (330)
T 2hes_X 208 TEGVFRLCSGSDDS-----------TVRVWKYMGDDEDD--QQEWVCEAI--------LPDVHKRQVYNVAWGFNG--LI 264 (330)
T ss_dssp SSSSCEEEEEETTS-----------CEEEEEEEEECTTS--CEEEEEEEE--------CCSCCSSCEEEEEECTTS--CE
T ss_pred CCCeeEEEEEeCCC-----------eEEEEEecCCCccc--cceeEEeee--------cccccccceEEEEEcCCC--EE
Confidence 9 66776665443 47788875532210 000011111 011111234567888665 44
Q ss_pred EEEEeCCeEEEEEEECCCCcEEE---ecCCCC--CceeEEeeec-CCEEEEEEeCC
Q 003886 460 LSSIWGSSQVIISVNVSSGELLR---ITPAES--NFSWSLLTLD-GDNIIAVSSSP 509 (789)
Q Consensus 460 ~~~~~~~~~~l~~~dl~tg~~~~---lt~~~~--~~~~~~~s~d-g~~l~~~~ss~ 509 (789)
+++..++...||.+. +++.+. ....+. .+....|++. ++.++++.+..
T Consensus 265 ~s~~~dg~v~iw~~~--~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~D 318 (330)
T 2hes_X 265 ASVGADGVLAVYEEV--DGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDD 318 (330)
T ss_dssp EEEETTSCEEEEEEE--TTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETT
T ss_pred EEEeCCCEEEEEEcC--CCceEEEeccccccccceEEEEEEecCCCceEEEEecCC
Confidence 666667777777654 564322 222222 2344567773 23344444443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-08 Score=105.21 Aligned_cols=251 Identities=14% Similarity=0.040 Sum_probs=143.5
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~ 235 (789)
...|+|+|+|+.|+++...+ .+++.++..+. .+........ ..++.++|||+.++. ..
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~---~~i~~~~~~~~-~~~~~~~~~~---------~~~l~~~~dg~l~v~--~~------- 87 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQ---NRTWAWSDDGQ-LSPEMHPSHH---------QNGHCLNKQGHLIAC--SH------- 87 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGG---TEEEEEETTSC-EEEEESSCSS---------EEEEEECTTCCEEEE--ET-------
T ss_pred ccCCeEeCCCCEEEEEeCCC---CEEEEEECCCC-eEEEECCCCC---------cceeeECCCCcEEEE--ec-------
Confidence 56899999999888876543 25776664443 3333322211 168999999984432 21
Q ss_pred ccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCC---CCccceEEEeeCCCCCccE
Q 003886 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~---~~~~~~~~wSPDg~~~~~~ 312 (789)
....|+++|..+|+.+.+..... ...+..++++|||+
T Consensus 88 -----------------------------------~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~----- 127 (296)
T 3e5z_A 88 -----------------------------------GLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS----- 127 (296)
T ss_dssp -----------------------------------TTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC-----
T ss_pred -----------------------------------CCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC-----
Confidence 12568999988888766521111 12356789999997
Q ss_pred EEEEeecCCce--eeeeee-eccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEE
Q 003886 313 LVFVGWSSETR--KLGIKY-CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 313 l~f~~~~~~~~--~~g~~~-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~ 389 (789)
|+++....... ..+... .......||+++. + +..+.+..........+|||||+.| +.
T Consensus 128 l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~-----------------~-g~~~~~~~~~~~~~gi~~s~dg~~l-v~ 188 (296)
T 3e5z_A 128 LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP-----------------D-GTLSAPIRDRVKPNGLAFLPSGNLL-VS 188 (296)
T ss_dssp EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT-----------------T-SCEEEEECCCSSEEEEEECTTSCEE-EE
T ss_pred EEEECCccccccccccccccccCCCcEEEEECC-----------------C-CCEEEeecCCCCCccEEECCCCCEE-EE
Confidence 56642100000 000000 0001237999986 4 5566665555556778999999988 55
Q ss_pred ecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEE
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (789)
... ...|+++|+...+. +. ....+.. . ... .+..+.+++||+ |++.. . ..
T Consensus 189 ~~~----------~~~i~~~~~~~~g~--~~-~~~~~~~---~--~~~-------~p~~i~~d~~G~-l~v~~--~--~~ 238 (296)
T 3e5z_A 189 DTG----------DNATHRYCLNARGE--TE-YQGVHFT---V--EPG-------KTDGLRVDAGGL-IWASA--G--DG 238 (296)
T ss_dssp ETT----------TTEEEEEEECSSSC--EE-EEEEEEC---C--SSS-------CCCSEEEBTTSC-EEEEE--T--TE
T ss_pred eCC----------CCeEEEEEECCCCc--Cc-CCCeEee---C--CCC-------CCCeEEECCCCC-EEEEc--C--Ce
Confidence 432 24699999863221 10 0001110 0 011 234678999997 66655 2 35
Q ss_pred EEEEECCCCcEEEecCCCCCceeEEe-eecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 470 IISVNVSSGELLRITPAESNFSWSLL-TLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 470 l~~~dl~tg~~~~lt~~~~~~~~~~~-s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
|+++|.++..+..+..... .....| +++++.|+.+..+ .++++++.++
T Consensus 239 v~~~~~~g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-----~l~~~~~~~~ 287 (296)
T 3e5z_A 239 VHVLTPDGDELGRVLTPQT-TSNLCFGGPEGRTLYMTVST-----EFWSIETNVR 287 (296)
T ss_dssp EEEECTTSCEEEEEECSSC-CCEEEEESTTSCEEEEEETT-----EEEEEECSCC
T ss_pred EEEECCCCCEEEEEECCCC-ceeEEEECCCCCEEEEEcCC-----eEEEEEcccc
Confidence 8888887555555554433 444567 4677777766543 5888887644
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.8e-09 Score=110.09 Aligned_cols=251 Identities=10% Similarity=0.066 Sum_probs=138.7
Q ss_pred cCCCC---CceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEE------EeCCCCCeEEEEec
Q 003886 103 SGNGN---GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAV------VPSPSGSKLLVVRN 173 (789)
Q Consensus 103 ~~spd---g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~------~~SPdG~~la~~~~ 173 (789)
.++|+ |+.++... ..+.+.++++.........+.... ..+... +|||+|+.|+....
T Consensus 72 ~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~s~~~~~l~~~~~ 137 (357)
T 3i2n_A 72 TFGATSLQQRYLATGD---------FGGNLHIWNLEAPEMPVYSVKGHK-----EIINAIDGIGGLGIGEGAPEIVTGSR 137 (357)
T ss_dssp ECTTCCTTTCCEEEEE---------TTSCEEEECTTSCSSCSEEECCCS-----SCEEEEEEESGGGCC-CCCEEEEEET
T ss_pred EEcCCCCCCceEEEec---------CCCeEEEEeCCCCCccEEEEEecc-----cceEEEeeccccccCCCccEEEEEeC
Confidence 45676 67776542 234566666633321223333222 335555 57999999998766
Q ss_pred CCCCCCeEEEEec--CCc-eeEEEecCCCc-cccccCCCccccee----ecCCCCEEEEEeecCCCCCCCccCCCCCCCC
Q 003886 174 PENESPIQFELWS--QSQ-LEKEFHVPQTV-HGSVYADGWFEGIS----WNSDETLIAYVAEEPSPSKPTFSLGSTKGGS 245 (789)
Q Consensus 174 ~~~~~~~~~~i~~--~~~-~~~~~~~~~~~-~g~v~~d~~~~~~~----wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~ 245 (789)
.+ .+.+|+ .++ ....+....+. ...+ ..+. |+||++.|+....+
T Consensus 138 d~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~~~~~l~~~~~d----------------- 189 (357)
T 3i2n_A 138 DG-----TVKVWDPRQKDDPVANMEPVQGENKRDC------WTVAFGNAYNQEERVVCAGYDN----------------- 189 (357)
T ss_dssp TS-----CEEEECTTSCSSCSEEECCCTTSCCCCE------EEEEEECCCC-CCCEEEEEETT-----------------
T ss_pred CC-----eEEEEeCCCCCCcceeccccCCCCCCce------EEEEEEeccCCCCCEEEEEccC-----------------
Confidence 53 355662 332 33333321111 1111 3444 89999988876432
Q ss_pred CCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEee---CCCCCccEEEEEeecCCc
Q 003886 246 SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAP---LNEGLHQYLVFVGWSSET 322 (789)
Q Consensus 246 ~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSP---Dg~~~~~~l~f~~~~~~~ 322 (789)
..|.+||+.+++.... ......+..+.|+| +++. |+..+
T Consensus 190 ---------------------------~~i~i~d~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~----l~~~~----- 231 (357)
T 3i2n_A 190 ---------------------------GDIKLFDLRNMALRWE--TNIKNGVCSLEFDRKDISMNK----LVATS----- 231 (357)
T ss_dssp ---------------------------SEEEEEETTTTEEEEE--EECSSCEEEEEESCSSSSCCE----EEEEE-----
T ss_pred ---------------------------CeEEEEECccCceeee--cCCCCceEEEEcCCCCCCCCE----EEEEC-----
Confidence 5799999999887655 33445678999999 8886 66654
Q ss_pred eeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccc
Q 003886 323 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 402 (789)
Q Consensus 323 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~ 402 (789)
....|+++|+..... ...-....+..+...+...+|+|||+.+++....+
T Consensus 232 ----------~dg~i~i~d~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------- 281 (357)
T 3i2n_A 232 ----------LEGKFHVFDMRTQHP-----------TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA--------- 281 (357)
T ss_dssp ----------STTEEEEEEEEEEET-----------TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT---------
T ss_pred ----------CCCeEEEEeCcCCCc-----------ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC---------
Confidence 223577777621100 00000112235666788899999999444444332
Q ss_pred cceeEEeecCCCCCCCccc---------ceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 403 TDSLHRIDWPTNGNFSSLE---------KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 403 ~~~L~~~d~~~~~~~~~t~---------~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
..|++||+..+....... +....+..... ....+..+.|+|||+.|++++..++...+|.+
T Consensus 282 -g~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---------~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~ 351 (357)
T 3i2n_A 282 -GGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL---------STQPISSLDWSPDKRGLCVCSSFDQTVRVLIV 351 (357)
T ss_dssp -SEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC---------CSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred -CcEEEeecCCCcccccccCCCCccccccccceeecccc---------CCCCeeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence 258888887644321100 00011111110 11235578899999988777777777777754
|
| >2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod glycosylated protein, hydrolase; HET: NAG FUC SCK SCU P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A* 1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A* 2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A* 2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ... | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-10 Score=130.79 Aligned_cols=132 Identities=21% Similarity=0.184 Sum_probs=92.9
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchh-hHHHHHHHHH-CCcEEEEEcCC-CCCCCCchhhccCCCC
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YSKSLAFLSS-VGYSLLIVNYR-GSLGFGEEALQSLPGK 646 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~-~~~~~~~la~-~Gy~V~~~d~r-Gs~G~G~~~~~~~~~~ 646 (789)
+.|+..+. ++.|... ..++.|+||++|||+....... .......|++ .|++|+.+||| |..||+.... .+..
T Consensus 93 ~edcl~l~--v~~P~~~-~~~~~Pviv~iHGGg~~~g~~~~~~~~~~~la~~~g~vvv~~nYRlg~~Gf~~~~~--~~~~ 167 (543)
T 2ha2_A 93 SEDCLYLN--VWTPYPR-PASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLALPG--SREA 167 (543)
T ss_dssp ESCCCEEE--EEEESSC-CSSCEEEEEEECCSTTTCCCTTSGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCTT--CSSC
T ss_pred CCcCCeEE--EeecCCC-CCCCCeEEEEECCCccccCCCCCCcCChHHHHhcCCEEEEEecccccccccccCCC--CCCC
Confidence 34665555 5567532 3456899999999886543322 1223456665 79999999999 5445554310 1122
Q ss_pred CCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhC--CCceeEEEEeCCcc
Q 003886 647 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 706 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~--p~~~~a~v~~~pv~ 706 (789)
.+...+.|+.++++|+.++. ..|++||+|+|+|.||+++..++... +.+|+++|+.+|..
T Consensus 168 ~~n~gl~D~~~al~wv~~~i~~fggDp~~v~i~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 232 (543)
T 2ha2_A 168 PGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (543)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred CCcccHHHHHHHHHHHHHHHHHhCCChhheEEEeechHHHHHHHHHhCcccHHhHhhheeccCCc
Confidence 33445899999999998862 36999999999999999998887642 46899999999854
|
| >4g4g_A 4-O-methyl-glucuronoyl methylesterase; alpha/beta hydrolase, 3-layer alpha/beta/alpha sandwich, ROS fold, glucuronoyl esterase; 1.55A {Myceliophthora thermophila} PDB: 4g4i_A 4g4j_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-09 Score=114.95 Aligned_cols=115 Identities=18% Similarity=0.135 Sum_probs=89.7
Q ss_pred eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcC--------CCCCCCCchhhccC--
Q 003886 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNY--------RGSLGFGEEALQSL-- 643 (789)
Q Consensus 574 ~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~--------rGs~G~G~~~~~~~-- 643 (789)
..+.+.+++|.+ .++.|+||.+||+.. ...+||+++.+|+ +|+.|+|. |....
T Consensus 123 ~sf~~~i~lP~g---~~P~Pvii~~~~~~~-------------~~~~G~A~i~f~~~~va~d~~~gsrG~g~-f~~ly~~ 185 (433)
T 4g4g_A 123 ISFSASIRKPSG---AGPFPAIIGIGGASI-------------PIPSNVATITFNNDEFGAQMGSGSRGQGK-FYDLFGR 185 (433)
T ss_dssp EEEEEEEECCSS---SCCEEEEEEESCCCS-------------CCCTTSEEEEECHHHHSCCSSGGGTTCSH-HHHHHCT
T ss_pred EEEEEEEECCCC---CCCccEEEEECCCcc-------------ccCCCeEEEEeCCcccccccCCCcCCccc-cccccCC
Confidence 457899999974 578999999997421 1357999999997 45667776 43211
Q ss_pred CCCCCccc--HHHHHHHHHHHHH----cCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 644 PGKVGSQD--VNDVLTAIDHVID----MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 644 ~~~~~~~~--~~D~~~~i~~l~~----~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
...++... .-++..+++||.. ++.||++||+|+|||+||..++++++.. +||+++|+.++..
T Consensus 186 ~~~~gal~aWAWg~~raiDyL~~~~~~~~~VD~~RIgv~G~S~gG~~Al~aaA~D-~Ri~~vi~~~sg~ 253 (433)
T 4g4g_A 186 DHSAGSLTAWAWGVDRLIDGLEQVGAQASGIDTKRLGVTGCSRNGKGAFITGALV-DRIALTIPQESGA 253 (433)
T ss_dssp TCSCCHHHHHHHHHHHHHHHHHHHCHHHHCEEEEEEEEEEETHHHHHHHHHHHHC-TTCSEEEEESCCT
T ss_pred ccchHHHHHHHHhHHHHHHHHHhccccCCCcChhHEEEEEeCCCcHHHHHHHhcC-CceEEEEEecCCC
Confidence 12455433 2589999999999 8889999999999999999999999986 5999999998754
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=7.6e-09 Score=114.21 Aligned_cols=157 Identities=11% Similarity=0.104 Sum_probs=95.1
Q ss_pred ccceeecCCCCEEEEEeecCCCCCCCccCCCCC-C-------CCCCcCCCCCCCcceeeCCc-ccccCCccCceEEEEEc
Q 003886 210 FEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK-G-------GSSDKDCNSWKGQGDWEEDW-GETYAGKRQPSLFVINI 280 (789)
Q Consensus 210 ~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~d~-g~~~~~~~~~~l~v~d~ 280 (789)
+..++|+|||+.|+.. .+... ..|+..... . ......+........|.++. ...+++..+..|.+||+
T Consensus 180 v~~~~~~~~~~~l~s~-~d~~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 180 INSISINSDYETYLSA-DDLRI--NLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp CCEEEECTTSSEEEEE-CSSEE--EEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred eEEEEEcCCCCEEEEe-CCCeE--EEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEEC
Confidence 3789999999998875 43322 233322110 0 01123344445566788885 34455666789999999
Q ss_pred cCCce-----EeccCCCCC-----------CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEeccc
Q 003886 281 NSGEV-----QAVKGIPKS-----------LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 344 (789)
Q Consensus 281 ~~g~~-----~~l~~~~~~-----------~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 344 (789)
.+++. ..+. .... ..+..++|+|||+. |+..+ . ..|.++|+..
T Consensus 257 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~----l~~~~---------------~-~~v~iwd~~~ 315 (447)
T 3dw8_B 257 RASALCDRHSKLFE-EPEDPSNRSFFSEIISSISDVKFSHSGRY----MMTRD---------------Y-LSVKVWDLNM 315 (447)
T ss_dssp TTCSSSCTTCEEEC-CC-----CCHHHHHTTCEEEEEECTTSSE----EEEEE---------------S-SEEEEEETTC
T ss_pred cCCccccceeeEec-cCCCccccccccccCceEEEEEECCCCCE----EEEee---------------C-CeEEEEeCCC
Confidence 98874 4442 1111 16789999999997 76554 1 3678888721
Q ss_pred ccchhhhhhhhcCCCCCCCeeecCCCCC---------------ccCcceecCCCCEEEEEecCCCCCCCCccccceeEEe
Q 003886 345 YKSEASELELKESSSEDLPVVNLTESIS---------------SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 409 (789)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~Lt~~~~---------------~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~ 409 (789)
.......+..+.. .....+|||||++|+..+.+ ..|++|
T Consensus 316 ---------------~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~d-----------g~v~iw 369 (447)
T 3dw8_B 316 ---------------ENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYN-----------NFFRMF 369 (447)
T ss_dssp ---------------CSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECST-----------TEEEEE
T ss_pred ---------------CccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccC-----------CEEEEE
Confidence 1222333333321 12238999999998766543 369999
Q ss_pred ecCCCCC
Q 003886 410 DWPTNGN 416 (789)
Q Consensus 410 d~~~~~~ 416 (789)
|+.+++.
T Consensus 370 d~~~~~~ 376 (447)
T 3dw8_B 370 DRNTKRD 376 (447)
T ss_dssp ETTTCCE
T ss_pred EcCCCcc
Confidence 9987654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-08 Score=114.39 Aligned_cols=236 Identities=8% Similarity=-0.034 Sum_probs=136.9
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccC
Q 003886 160 VPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSL 238 (789)
Q Consensus 160 ~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~ 238 (789)
++||+|+.++ ....+ ..+.+++ ..++..+.+...... ..+.+||||++|+....+
T Consensus 144 ~~~p~~~~~v--s~~~d--~~V~v~D~~t~~~~~~i~~g~~~----------~~v~~spdg~~l~v~~~d---------- 199 (543)
T 1nir_A 144 DLDLPNLFSV--TLRDA--GQIALVDGDSKKIVKVIDTGYAV----------HISRMSASGRYLLVIGRD---------- 199 (543)
T ss_dssp CCCGGGEEEE--EEGGG--TEEEEEETTTCCEEEEEECSTTE----------EEEEECTTSCEEEEEETT----------
T ss_pred ccCCCCEEEE--EEcCC--CeEEEEECCCceEEEEEecCccc----------ceEEECCCCCEEEEECCC----------
Confidence 5899885433 33221 2455555 456666555533223 578899999988765332
Q ss_pred CCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEc--cCCceEeccCCCCCCccceEEEee----CCCCCccE
Q 003886 239 GSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVINI--NSGEVQAVKGIPKSLSVGQVVWAP----LNEGLHQY 312 (789)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~--~~g~~~~l~~~~~~~~~~~~~wSP----Dg~~~~~~ 312 (789)
..|.+||+ .++++... ++.......++||| ||+.
T Consensus 200 ----------------------------------~~V~v~D~~~~t~~~~~~--i~~g~~p~~va~sp~~~~dg~~---- 239 (543)
T 1nir_A 200 ----------------------------------ARIDMIDLWAKEPTKVAE--IKIGIEARSVESSKFKGYEDRY---- 239 (543)
T ss_dssp ----------------------------------SEEEEEETTSSSCEEEEE--EECCSEEEEEEECCSTTCTTTE----
T ss_pred ----------------------------------CeEEEEECcCCCCcEEEE--EecCCCcceEEeCCCcCCCCCE----
Confidence 56899999 77765433 23344567899999 9996
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCee-ecCCC-----------CCccCcceec
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTES-----------ISSAFFPRFS 380 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~Lt~~-----------~~~~~~p~~S 380 (789)
|+ +++.. ...|.++|. .+.++. .+... ........+|
T Consensus 240 l~-v~~~~-------------~~~v~v~D~-----------------~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s 288 (543)
T 1nir_A 240 TI-AGAYW-------------PPQFAIMDG-----------------ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIAS 288 (543)
T ss_dssp EE-EEEEE-------------SSEEEEEET-----------------TTCCEEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred EE-EEEcc-------------CCeEEEEec-----------------cccccceeecccCcccCccccccCCceEEEEEC
Confidence 54 44321 235778886 444432 22211 1134567899
Q ss_pred CCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEE
Q 003886 381 PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 460 (789)
Q Consensus 381 pDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~ 460 (789)
|||+.+++.... ..+|+++|..+.+...++ . +. . .. .+....|+|||++++.
T Consensus 289 ~~~~~~~vs~~~----------~g~i~vvd~~~~~~l~~~----~-i~---~---~~-------~~~~~~~spdg~~l~v 340 (543)
T 1nir_A 289 HEHPEFIVNVKE----------TGKVLLVNYKDIDNLTVT----S-IG---A---AP-------FLHDGGWDSSHRYFMT 340 (543)
T ss_dssp SSSSEEEEEETT----------TTEEEEEECTTSSSCEEE----E-EE---C---CS-------SCCCEEECTTSCEEEE
T ss_pred CCCCEEEEEECC----------CCeEEEEEecCCCcceeE----E-ec---c---Cc-------CccCceECCCCCEEEE
Confidence 999987655432 247999998765432110 1 11 0 11 2346789999998876
Q ss_pred EEEeCCeEEEEEEECCCCcEEEecCCCC---C-ceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 461 SSIWGSSQVIISVNVSSGELLRITPAES---N-FSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 461 ~~~~~~~~~l~~~dl~tg~~~~lt~~~~---~-~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
.....+ .|..+|+.+|++........ . .....++++++.++++.+... ..|.+++..+
T Consensus 341 a~~~~~--~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d--~~V~v~d~~~ 402 (543)
T 1nir_A 341 AANNSN--KVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGD--GSISLIGTDP 402 (543)
T ss_dssp EEGGGT--EEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSS--SEEEEEECCT
T ss_pred EecCCC--eEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCC--ceEEEEEeCC
Confidence 654444 45558999998876543211 0 111234677677666554221 2366666544
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.03 E-value=3.3e-07 Score=97.65 Aligned_cols=127 Identities=13% Similarity=0.128 Sum_probs=71.4
Q ss_pred cceec-CCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccC
Q 003886 376 FPRFS-PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 454 (789)
Q Consensus 376 ~p~~S-pDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~D 454 (789)
.+.|. +||+ ++|.+.. .+++++|..++....+ ... .+...... .....| .+...+.+++|
T Consensus 230 ~~~~~~~dG~-~~~vs~~-----------g~V~v~d~~~~~~~v~-~~~-~~~~~~~~-~~g~~p----~g~q~~a~~~~ 290 (386)
T 3sjl_D 230 HPAYSQKAGR-LVWPTYT-----------GKIHQIDLSSGDAKFL-PAV-EALTEAER-ADGWRP----GGWQQVAYHRA 290 (386)
T ss_dssp CCEEETTTTE-EEEEBTT-----------SEEEEEECTTSSCEEC-CCE-ESSCHHHH-HTTEEE----CSSSCEEEETT
T ss_pred cceeEcCCCc-EEEEeCC-----------CEEEEEECCCCcceee-cce-eccccccc-cccccC----CCcceeeECCC
Confidence 46774 7885 6677753 2699999876543211 110 00000000 000001 12234567899
Q ss_pred CCEEEEEEEeC-------CeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 455 GCTMLLSSIWG-------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 455 g~~l~~~~~~~-------~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
++++|+....+ ....++.+|+.++++.+-...........+++|++.++|+.... -..+.++|..+.
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~--~~~VsViD~~t~ 364 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG--DKTLYIHDAESG 364 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETT--TTEEEEEETTTC
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCC--CCeEEEEECCCC
Confidence 99999876532 24689999999998765433322233468899998555554432 234788886654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.4e-08 Score=107.01 Aligned_cols=233 Identities=10% Similarity=0.057 Sum_probs=131.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecC--CCCEEEEEeecC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNS--DETLIAYVAEEP 229 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSp--Dg~~la~~~~~~ 229 (789)
..+...+|||||++||..+... ...+|+ .+....+..+. +..+.| ..+.|+| +|+.|+..+.+
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~-----~v~lwd~~~~~~~~~~~l~-gH~~~V------~~v~~~~~~~~~~l~s~s~D- 80 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDR-----SVKIFDVRNGGQILIADLR-GHEGPV------WQVAWAHPMYGNILASCSYD- 80 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTT-----EEEEEEEETTEEEEEEEEE-CCSSCE------EEEEECCGGGSSCEEEEETT-
T ss_pred CeEEEeeEcCCCCEEEEEeCCC-----eEEEEEecCCCcEEEEEEc-CCCccE------EEEEeCCCCCCCEEEEEECC-
Confidence 3578899999999999877553 456662 33222222222 222333 7899987 48888876543
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCce---EeccCCCCCCccceEEEeeC-
Q 003886 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAPL- 305 (789)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~---~~l~~~~~~~~~~~~~wSPD- 305 (789)
..|.+||+.+++. ..+ ......+..++|+||
T Consensus 81 -------------------------------------------~~v~iWd~~~~~~~~~~~~--~~h~~~V~~v~~~p~~ 115 (316)
T 3bg1_A 81 -------------------------------------------RKVIIWREENGTWEKSHEH--AGHDSSVNSVCWAPHD 115 (316)
T ss_dssp -------------------------------------------SCEEEECCSSSCCCEEEEE--CCCSSCCCEEEECCTT
T ss_pred -------------------------------------------CEEEEEECCCCcceEEEEc--cCCCCceEEEEECCCC
Confidence 4578888887642 223 223346789999998
Q ss_pred -CCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC-C---eeecCCCCCccCcceec
Q 003886 306 -NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL-P---VVNLTESISSAFFPRFS 380 (789)
Q Consensus 306 -g~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~-~---~~~Lt~~~~~~~~p~~S 380 (789)
|+. |+..+. +..|.++|+ .++ . ...+..+...+...+|+
T Consensus 116 ~g~~----lasgs~---------------D~~i~lwd~-----------------~~~~~~~~~~~~~~h~~~v~~~~~~ 159 (316)
T 3bg1_A 116 YGLI----LACGSS---------------DGAISLLTY-----------------TGEGQWEVKKINNAHTIGCNAVSWA 159 (316)
T ss_dssp TCSC----EEEECS---------------SSCEEEEEE-----------------CSSSCEEECCBTTSSSSCBCCCEEC
T ss_pred CCcE----EEEEcC---------------CCCEEEEec-----------------CCCCCcceeeeeccccCCcceEEEc
Confidence 665 555542 235677776 222 1 12333445567788999
Q ss_pred CCC-----------------CEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccc
Q 003886 381 PDG-----------------KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 443 (789)
Q Consensus 381 pDG-----------------~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~ 443 (789)
|++ +.|+..+.+ ..|.+||+.+++... .... +.+ ..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~D-----------~~v~lWd~~~~~~~~-------~~~~--------l~~-h~ 212 (316)
T 3bg1_A 160 PAVVPGSLIDHPSGQKPNYIKRFASGGCD-----------NLIKLWKEEEDGQWK-------EEQK--------LEA-HS 212 (316)
T ss_dssp CCCCC------CCSCCCCCCCBEECCBTT-----------SBCCEEEECTTSCEE-------EEEC--------CBC-CS
T ss_pred cccCCccccccccccCccccceEEEecCC-----------CeEEEEEeCCCCccc-------eeee--------ccc-CC
Confidence 983 455443332 357788875432100 0000 000 01
Q ss_pred cCCCCCccccCC---CEEEEEEEeCCeEEEEEEECCC-Cc--EEEecCCCCCceeEEeeecCCEEEEEEe
Q 003886 444 SSILSNPWLSDG---CTMLLSSIWGSSQVIISVNVSS-GE--LLRITPAESNFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 444 ~~~~~~~ws~Dg---~~l~~~~~~~~~~~l~~~dl~t-g~--~~~lt~~~~~~~~~~~s~dg~~l~~~~s 507 (789)
..+..+.|+|++ ..+++++..++...||.++... ++ .+.+......+....|+++++.|+....
T Consensus 213 ~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~ 282 (316)
T 3bg1_A 213 DWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG 282 (316)
T ss_dssp SCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES
T ss_pred CceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC
Confidence 124567899987 2356777777777777543211 11 1122222233445678888887665543
|
| >1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A* 2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ... | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-10 Score=129.69 Aligned_cols=132 Identities=22% Similarity=0.192 Sum_probs=92.3
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchh-hHHHHHHHHH-CCcEEEEEcCC-CCCCCCchhhccCCCC
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YSKSLAFLSS-VGYSLLIVNYR-GSLGFGEEALQSLPGK 646 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~-~~~~~~~la~-~Gy~V~~~d~r-Gs~G~G~~~~~~~~~~ 646 (789)
+.|.+.+. ++.|... .++.|+||++|||+....... .......|++ .|++|+.+||| |..||..... ....
T Consensus 89 ~edcl~ln--v~~P~~~--~~~~Pv~v~iHGGg~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~--~~~~ 162 (529)
T 1p0i_A 89 SEDCLYLN--VWIPAPK--PKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGFLALPG--NPEA 162 (529)
T ss_dssp CSCCCEEE--EEEESSC--CSSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCTT--CTTS
T ss_pred CCcCCeEE--EeeCCCC--CCCCeEEEEECCCccccCCCCccccChHHHhccCCeEEEEecccccccccccCCC--CCCC
Confidence 34665554 6677642 267899999999886433322 1123456665 79999999999 4334433210 0112
Q ss_pred CCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhC--CCceeEEEEeCCccc
Q 003886 647 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCN 707 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~--p~~~~a~v~~~pv~~ 707 (789)
.+...+.|+.++++|+.++. ..|++||+|+|+|.||.++..++... ..+|+++|+.+|...
T Consensus 163 ~~n~gl~D~~~al~wv~~~i~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~ 228 (529)
T 1p0i_A 163 PGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSFN 228 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCTT
T ss_pred cCcccHHHHHHHHHHHHHHHHHhCCChhheEEeeccccHHHHHHHHhCccchHHHHHHHHhcCccc
Confidence 33445889999999998862 37999999999999999999888753 358999999999653
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.02 E-value=1.8e-08 Score=111.03 Aligned_cols=185 Identities=15% Similarity=0.081 Sum_probs=108.6
Q ss_pred ceEEEEEccCCce--------EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEeccc
Q 003886 273 PSLFVININSGEV--------QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSL 344 (789)
Q Consensus 273 ~~l~v~d~~~g~~--------~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 344 (789)
..|.+||+.++.. ..+ ......+..++|+|++.. +++++. ....|+++|+..
T Consensus 204 g~i~vwd~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~----~l~s~~--------------~dg~i~i~d~~~ 263 (430)
T 2xyi_A 204 HTICLWDINATPKEHRVIDAKNIF--TGHTAVVEDVAWHLLHES----LFGSVA--------------DDQKLMIWDTRN 263 (430)
T ss_dssp SCEEEEETTSCCBGGGEEECSEEE--CCCSSCEEEEEECSSCTT----EEEEEE--------------TTSEEEEEETTC
T ss_pred CeEEEEeCCCCCCCCceeccceee--cCCCCCEeeeEEeCCCCC----EEEEEe--------------CCCeEEEEECCC
Confidence 5688888876321 222 233446788999997776 666552 233688888831
Q ss_pred ccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCccccee
Q 003886 345 YKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 424 (789)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~ 424 (789)
. ........+..+...+...+|+|+|+.++.+...+ ..|.+||+........+..
T Consensus 264 ~-------------~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~d----------g~v~vwd~~~~~~~~~~~~-- 318 (430)
T 2xyi_A 264 N-------------NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSAD----------KTVALWDLRNLKLKLHSFE-- 318 (430)
T ss_dssp S-------------CSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETT----------SEEEEEETTCTTSCSEEEE--
T ss_pred C-------------CCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCC----------CeEEEEeCCCCCCCeEEee--
Confidence 0 00123445555666788999999999755554332 3599999876332110000
Q ss_pred eEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCC------------CcEEEecCCCC-Cce
Q 003886 425 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS------------GELLRITPAES-NFS 491 (789)
Q Consensus 425 ~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~t------------g~~~~lt~~~~-~~~ 491 (789)
. ....+..+.|+|+++.+++++..++...||.+...+ .++......+. .+.
T Consensus 319 -------~---------h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 382 (430)
T 2xyi_A 319 -------S---------HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS 382 (430)
T ss_dssp -------C---------CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEE
T ss_pred -------c---------CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCce
Confidence 0 011345678999998888888777776676544311 13333333332 355
Q ss_pred eEEeeecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 492 WSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 492 ~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
...|++++.+++++.+... .|.+.++.
T Consensus 383 ~~~~~p~~~~~l~s~s~dg---~i~iw~~~ 409 (430)
T 2xyi_A 383 DFSWNPNEPWIICSVSEDN---IMQVWQMA 409 (430)
T ss_dssp EEEECSSSTTEEEEEETTS---EEEEEEEC
T ss_pred EEEECCCCCCEEEEEECCC---CEEEeEcc
Confidence 5678888886666665443 25555543
|
| >1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation, pancreas, glycoprotein, chimeric; 2.01A {Cavia porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B* 1n8s_A | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-10 Score=126.59 Aligned_cols=112 Identities=12% Similarity=0.053 Sum_probs=80.8
Q ss_pred CCCcEEEEEcCCCCCCCchhhHH-HHHHHHH-CCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSK-SLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~-~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (789)
...|+||++||.+.+. ...|.. ....|++ .||.|+++|+||. |.+........ ...-.+|+.+.++++.++..
T Consensus 68 ~~~~~vvllHG~~~s~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g~---g~s~~~~~~~~-~~~~~~dl~~~i~~l~~~~g 142 (432)
T 1gpl_A 68 LNRKTRFIIHGFTDSG-ENSWLSDMCKNMFQVEKVNCICVDWKGG---SKAQYSQASQN-IRVVGAEVAYLVQVLSTSLN 142 (432)
T ss_dssp TTSEEEEEECCTTCCT-TSHHHHHHHHHHHHHCCEEEEEEECHHH---HTSCHHHHHHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEECCCCCCC-CchHHHHHHHHHHhcCCcEEEEEECccc---cCccchhhHhh-HHHHHHHHHHHHHHHHHhcC
Confidence 4578999999977653 235655 5566776 8999999999973 32211100000 01124678888888876534
Q ss_pred CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
++.+++.|+|||+||.+++.++.++|++++++++.+|..
T Consensus 143 ~~~~~i~lvGhSlGg~vA~~~a~~~p~~v~~iv~l~pa~ 181 (432)
T 1gpl_A 143 YAPENVHIIGHSLGAHTAGEAGKRLNGLVGRITGLDPAE 181 (432)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTTTTCSSEEEEESCBC
T ss_pred CCcccEEEEEeCHHHHHHHHHHHhcccccceeEEecccc
Confidence 678999999999999999999999999999999988764
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.00 E-value=8.9e-08 Score=101.25 Aligned_cols=259 Identities=15% Similarity=0.113 Sum_probs=145.6
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEec-CCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~-~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
....|+|+|||+ |+++...+ .+++.++ .+++...+... ...+ .++.|+|||+.++......
T Consensus 46 ~~~~~~~~~~g~-l~~~~~~~---~~i~~~d~~~~~~~~~~~~~~~~~----------~~i~~~~dg~l~v~~~~~~--- 108 (333)
T 2dg1_A 46 QLEGLNFDRQGQ-LFLLDVFE---GNIFKINPETKEIKRPFVSHKANP----------AAIKIHKDGRLFVCYLGDF--- 108 (333)
T ss_dssp CEEEEEECTTSC-EEEEETTT---CEEEEECTTTCCEEEEEECSSSSE----------EEEEECTTSCEEEEECTTS---
T ss_pred cccCcEECCCCC-EEEEECCC---CEEEEEeCCCCcEEEEeeCCCCCc----------ceEEECCCCcEEEEeCCCC---
Confidence 356899999998 55543322 2577766 45555554422 2222 6899999997544321110
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEec-cCCCCCCccceEEEeeCCCCCcc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l-~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
.....|+++|.++++.+.+ ........+..+.++|||+
T Consensus 109 -------------------------------------~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~---- 147 (333)
T 2dg1_A 109 -------------------------------------KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG---- 147 (333)
T ss_dssp -------------------------------------SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC----
T ss_pred -------------------------------------CCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCC----
Confidence 0125799999998887643 1111223566889999996
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEec
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
|+++...... ......||+++. ++++.+.+.........++|+|||+.|++...
T Consensus 148 -l~v~~~~~~~--------~~~~~~l~~~~~-----------------~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~ 201 (333)
T 2dg1_A 148 -FYFTDFRGYS--------TNPLGGVYYVSP-----------------DFRTVTPIIQNISVANGIALSTDEKVLWVTET 201 (333)
T ss_dssp -EEEEECCCBT--------TBCCEEEEEECT-----------------TSCCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred -EEEEeccccc--------cCCCceEEEEeC-----------------CCCEEEEeecCCCcccceEECCCCCEEEEEeC
Confidence 5665432100 012347999987 55566655443334567899999998877653
Q ss_pred CCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 392 ~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
. ...|+++|+.+.+........ .+. .... ... .+..+.+++||+ |++.....+ .|+
T Consensus 202 ~----------~~~i~~~d~~~~g~~~~~~~~-~~~--~~~~-~~~-------~~~~i~~d~~G~-l~v~~~~~~--~v~ 257 (333)
T 2dg1_A 202 T----------ANRLHRIALEDDGVTIQPFGA-TIP--YYFT-GHE-------GPDSCCIDSDDN-LYVAMYGQG--RVL 257 (333)
T ss_dssp G----------GTEEEEEEECTTSSSEEEEEE-EEE--EECC-SSS-------EEEEEEEBTTCC-EEEEEETTT--EEE
T ss_pred C----------CCeEEEEEecCCCcCcccccc-eEE--EecC-CCC-------CCCceEECCCCC-EEEEEcCCC--EEE
Confidence 3 236999998643221000000 000 0000 000 123467888987 655543333 577
Q ss_pred EEECCCCcEEEecCCCC------CceeEEeeecCCEEEEEEeCCC--CCCeEEEEeec
Q 003886 472 SVNVSSGELLRITPAES------NFSWSLLTLDGDNIIAVSSSPV--DVPQVKYGYFV 521 (789)
Q Consensus 472 ~~dl~tg~~~~lt~~~~------~~~~~~~s~dg~~l~~~~ss~~--~p~~i~~~~~~ 521 (789)
++|.++..+..+..... ......+++|++.|+++..... ....||.+++.
T Consensus 258 ~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 258 VFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp EECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred EECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 78885444555543221 2344577888888877766532 23467777654
|
| >3g02_A Epoxide hydrolase; alpha/beta hydrolase fold, enantioselective, mutant, directed evolution; 1.50A {Aspergillus niger} SCOP: c.69.1.11 PDB: 1qo7_A 3g0i_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=6.5e-09 Score=113.11 Aligned_cols=120 Identities=14% Similarity=0.114 Sum_probs=88.2
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHH------CCcEEEEEcCCCCCCCCchhhccCCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS------VGYSLLIVNYRGSLGFGEEALQSLPG 645 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~------~Gy~V~~~d~rGs~G~G~~~~~~~~~ 645 (789)
+|..++.....+. ....|.||++||.+++ ...|...+..|++ .||.|+++|++| +|.+....
T Consensus 93 ~g~~i~~~~~~~~----~~~~~pllllHG~~~s--~~~~~~~~~~L~~~~~~~~~gf~vv~~DlpG---~G~S~~~~--- 160 (408)
T 3g02_A 93 EGLTIHFAALFSE----REDAVPIALLHGWPGS--FVEFYPILQLFREEYTPETLPFHLVVPSLPG---YTFSSGPP--- 160 (408)
T ss_dssp TTEEEEEEEECCS----CTTCEEEEEECCSSCC--GGGGHHHHHHHHHHCCTTTCCEEEEEECCTT---STTSCCSC---
T ss_pred CCEEEEEEEecCC----CCCCCeEEEECCCCCc--HHHHHHHHHHHhcccccccCceEEEEECCCC---CCCCCCCC---
Confidence 7888988777653 2345779999998875 5567778888887 699999999998 55544221
Q ss_pred CCCcccHHHHHHHHHHHHHcCCCCCc-cEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 646 KVGSQDVNDVLTAIDHVIDMGLANPS-KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~-rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
......++++.+.+..++++ +..+ ++.++|||+||++++.++.++|+++..++...++
T Consensus 161 ~~~~~~~~~~a~~~~~l~~~--lg~~~~~~lvG~S~Gg~ia~~~A~~~p~~~~~~l~~~~~ 219 (408)
T 3g02_A 161 LDKDFGLMDNARVVDQLMKD--LGFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNFCNM 219 (408)
T ss_dssp SSSCCCHHHHHHHHHHHHHH--TTCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCCC
T ss_pred CCCCCCHHHHHHHHHHHHHH--hCCCCCEEEeCCCchHHHHHHHHHhCCCceEEEEeCCCC
Confidence 01234577777777777776 3455 8999999999999999999998766665554443
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.00 E-value=9.4e-08 Score=104.89 Aligned_cols=244 Identities=15% Similarity=0.093 Sum_probs=151.8
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
.....||+++ .||...+. -..+| .+|+..+++.+.. ..+.| .+++|||||+.||..+.+
T Consensus 108 ~~~l~wS~~n-~lAvgld~------tV~lWd~~tg~~~~~~~~~~-~~~~V------~sv~fspdg~~lasgs~D----- 168 (420)
T 4gga_A 108 LNLVDWSSGN-VLAVALDN------SVYLWSASSGDILQLLQMEQ-PGEYI------SSVAWIKEGNYLAVGTSS----- 168 (420)
T ss_dssp CBCEEECTTS-EEEEEETT------EEEEEETTTCCEEEEEECCS-TTCCE------EEEEECTTSSEEEEEETT-----
T ss_pred ceeEEECCCC-EEEEEeCC------EEEEEECCCCCEEEEEEecC-CCCcE------EEEEECCCCCEEEEEECC-----
Confidence 4568999864 77765432 35677 4666666666432 11223 799999999999876443
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (789)
..|.+||+.+++..... ......+. ++++|++. |
T Consensus 169 ---------------------------------------g~v~iWd~~~~~~~~~~-~~h~~~v~--~~s~~~~~----l 202 (420)
T 4gga_A 169 ---------------------------------------AEVQLWDVQQQKRLRNM-TSHSARVG--SLSWNSYI----L 202 (420)
T ss_dssp ---------------------------------------SCEEEEETTTTEEEEEE-CCCSSCEE--EEEEETTE----E
T ss_pred ---------------------------------------CeEEEEEcCCCcEEEEE-eCCCCceE--EEeeCCCE----E
Confidence 56889999988765441 12222333 45566664 4
Q ss_pred EEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 314 ~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
+..+ ....++.+|... .......+..+........|+|+|+.|+..+.+.
T Consensus 203 ~sgs---------------~d~~i~~~d~~~---------------~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~ 252 (420)
T 4gga_A 203 SSGS---------------RSGHIHHHDVRV---------------AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN 252 (420)
T ss_dssp EEEE---------------TTSEEEEEETTS---------------SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEe---------------CCCceeEeeecc---------------cceeeEEecccccceeeeeecCCCCeeeeeeccc
Confidence 4443 233577777621 2233455666777788899999999998777553
Q ss_pred CCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 394 ~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
.+.+||..++........... . ....+....|+|++..+++++.......|..+
T Consensus 253 -----------~v~i~~~~~~~~~~~~~~~~~-----------~----~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iw 306 (420)
T 4gga_A 253 -----------LVNVWPSAPGEGGWVPLQTFT-----------Q----HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 306 (420)
T ss_dssp -----------CEEEEESSCCSSCSCCSEEEC-----------C----CSSCEEEEEECTTCTTEEEEEECTTTCEEEEE
T ss_pred -----------cceEEeeccccccceeeeeec-----------c----cCCceeeeeeCCCcccEEEEEeecCCCEEEEE
Confidence 488888877554211110000 0 01123456799988878777654444566777
Q ss_pred ECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 474 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 474 dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
|+.+|+...............++++++.++....... ..|.+.+..+
T Consensus 307 d~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d--~~I~iwd~~~ 353 (420)
T 4gga_A 307 NVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ--NQLVIWKYPT 353 (420)
T ss_dssp ETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTT--CCEEEEETTT
T ss_pred eCCccccceeeccccceeeeeecCCCCeEEEEEecCC--CEEEEEECCC
Confidence 9989987776655555555678899998877654332 2366666543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-07 Score=100.32 Aligned_cols=211 Identities=13% Similarity=0.074 Sum_probs=118.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cC-CceeEEEecCCCccccccCCCcccceeecC--CCCEEEEEeec
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQ-SQLEKEFHVPQTVHGSVYADGWFEGISWNS--DETLIAYVAEE 228 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~-~~~~~~~~~~~~~~g~v~~d~~~~~~~wSp--Dg~~la~~~~~ 228 (789)
..+...+|||||++||.....+ .+.+| .. ....+....-....+.| ..+.|+| |++.|+..+.+
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~v------~~~~~~~~~d~~~l~s~~~d 80 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSDQ-----HIKVFKLDKDTSNWELSDSWRAHDSSI------VAIDWASPEYGRIIASASYD 80 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETTS-----EEEEEEECSSSCCEEEEEEEECCSSCE------EEEEECCGGGCSEEEEEETT
T ss_pred cceeEEEEcCCCCEEEEeeCCC-----eEEEEECCCCCCcceecceeccCCCcE------EEEEEcCCCCCCEEEEEcCC
Confidence 4588999999999998876543 45555 22 22212222111222233 7899999 69988876443
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc----------eEeccCCCCCCccc
Q 003886 229 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE----------VQAVKGIPKSLSVG 298 (789)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~----------~~~l~~~~~~~~~~ 298 (789)
..|.+||+.+++ ...+ ......+.
T Consensus 81 --------------------------------------------g~v~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~v~ 114 (351)
T 3f3f_A 81 --------------------------------------------KTVKLWEEDPDQEECSGRRWNKLCTL--NDSKGSLY 114 (351)
T ss_dssp --------------------------------------------SCEEEEEECTTSCTTSSCSEEEEEEE--CCCSSCEE
T ss_pred --------------------------------------------CeEEEEecCCCcccccccCcceeeee--cccCCcee
Confidence 468888887763 2233 23345678
Q ss_pred eEEEeeC--CCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeec----CCCCC
Q 003886 299 QVVWAPL--NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL----TESIS 372 (789)
Q Consensus 299 ~~~wSPD--g~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L----t~~~~ 372 (789)
.+.|+|+ ++. |+..+ .+..|+++|+.......... .......+ ..+..
T Consensus 115 ~~~~~~~~~~~~----l~~~~---------------~dg~v~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 168 (351)
T 3f3f_A 115 SVKFAPAHLGLK----LACLG---------------NDGILRLYDALEPSDLRSWT-------LTSEMKVLSIPPANHLQ 168 (351)
T ss_dssp EEEECCGGGCSE----EEEEE---------------TTCEEEEEECSSTTCTTCCE-------EEEEEESCSCCCSSCSC
T ss_pred EEEEcCCCCCcE----EEEec---------------CCCcEEEecCCChHHhcccc-------ccccccccccccCCccc
Confidence 8999999 886 66655 22367788873110000000 00000001 12344
Q ss_pred ccCcceecCC---CCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCC
Q 003886 373 SAFFPRFSPD---GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSN 449 (789)
Q Consensus 373 ~~~~p~~SpD---G~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~ 449 (789)
......|+|+ ++.|+..+.+. .+..++...+.... +.. ... ....+..+
T Consensus 169 ~~~~~~~~p~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~-------~~~-~~~---------h~~~i~~~ 220 (351)
T 3f3f_A 169 SDFCLSWCPSRFSPEKLAVSALEQ-----------AIIYQRGKDGKLHV-------AAK-LPG---------HKSLIRSI 220 (351)
T ss_dssp CCEEEEECCCSSSCCEEEEEETTE-----------EEEEEECTTSCEEE-------EEE-CCC---------CCSCEEEE
T ss_pred ceeEEEeccCCCCCcEEEEecCCC-----------cEEEEccCCCceee-------eee-cCC---------CCcceeEE
Confidence 5778899998 88887766443 24444433322110 000 000 01134567
Q ss_pred ccccCCC---EEEEEEEeCCeEEEEEEEC
Q 003886 450 PWLSDGC---TMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 450 ~ws~Dg~---~l~~~~~~~~~~~l~~~dl 475 (789)
.|+|++. .+++++..++...+|.+..
T Consensus 221 ~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 221 SWAPSIGRWYQLIATGCKDGRIRIFKITE 249 (351)
T ss_dssp EECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred EECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence 8999983 5667777788888887663
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.7e-08 Score=103.03 Aligned_cols=249 Identities=10% Similarity=0.035 Sum_probs=141.4
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~ 235 (789)
...|+|+|||+.|+|+...+ ..++.+..+++........... .++.|+|||+.++. ..
T Consensus 47 ~egp~~~~~g~~l~~~d~~~---~~i~~~~~~g~~~~~~~~~~~~----------~gl~~d~dG~l~v~--~~------- 104 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVG---RRVLGWREDGTVDVLLDATAFT----------NGNAVDAQQRLVHC--EH------- 104 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTT---TEEEEEETTSCEEEEEESCSCE----------EEEEECTTSCEEEE--ET-------
T ss_pred ccCCeEeCCCCEEEEEECCC---CEEEEEeCCCCEEEEeCCCCcc----------ceeeECCCCCEEEE--EC-------
Confidence 45799999999998886543 2466666555544333322222 68899999984433 21
Q ss_pred ccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCC---CCccceEEEeeCCCCCccE
Q 003886 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~---~~~~~~~~wSPDg~~~~~~ 312 (789)
....|++++.+ |+.+.+..... ...+..++++|||+
T Consensus 105 -----------------------------------~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~----- 143 (305)
T 3dr2_A 105 -----------------------------------GRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA----- 143 (305)
T ss_dssp -----------------------------------TTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC-----
T ss_pred -----------------------------------CCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC-----
Confidence 12457777775 55554421111 12356789999997
Q ss_pred EEEEe----ecCCceeeeeee-eccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEE
Q 003886 313 LVFVG----WSSETRKLGIKY-CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 313 l~f~~----~~~~~~~~g~~~-~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la 387 (789)
|+|+- .... ..+... .......||++|. ++++.+.+. .......++|||||+.|+
T Consensus 144 l~~td~~~g~~~~--~~~~~~~~~~~~~~v~~~d~-----------------~~g~~~~~~-~~~~p~gl~~spdg~~ly 203 (305)
T 3dr2_A 144 IWFTDPPFGLRKP--SQGCPADPELAHHSVYRLPP-----------------DGSPLQRMA-DLDHPNGLAFSPDEQTLY 203 (305)
T ss_dssp EEEECCSGGGSCG--GGSCCCCCSSSCEEEEEECS-----------------SSCCCEEEE-EESSEEEEEECTTSSEEE
T ss_pred EEEeCcCCCcccc--ccccccccccCCCeEEEEcC-----------------CCCcEEEEe-cCCCCcceEEcCCCCEEE
Confidence 67641 1100 000000 0011247999997 667776665 434456789999999887
Q ss_pred EEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCe
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 467 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 467 (789)
+...... ......|+++|+.+++ ++. ...+.. . ... ....+.+.+||+ |++.. .
T Consensus 204 v~~~~~~-----~~~~~~i~~~~~~~~~---l~~-~~~~~~---~--~~~-------~pdgi~~d~~G~-lwv~~-~--- 257 (305)
T 3dr2_A 204 VSQTPEQ-----GHGSVEITAFAWRDGA---LHD-RRHFAS---V--PDG-------LPDGFCVDRGGW-LWSSS-G--- 257 (305)
T ss_dssp EEECCC--------CCCEEEEEEEETTE---EEE-EEEEEC---C--SSS-------CCCSEEECTTSC-EEECC-S---
T ss_pred EEecCCc-----CCCCCEEEEEEecCCC---ccC-CeEEEE---C--CCC-------CCCeEEECCCCC-EEEec-C---
Confidence 7654320 0112479999987643 111 111111 0 001 234567889998 66553 2
Q ss_pred EEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEe
Q 003886 468 QVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 519 (789)
Q Consensus 468 ~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~ 519 (789)
..|++++.++..+..+..... .....|+++++.|+++.++ .+|+++
T Consensus 258 ~gv~~~~~~g~~~~~~~~~~~-~~~~~f~~d~~~L~it~~~-----~l~~~~ 303 (305)
T 3dr2_A 258 TGVCVFDSDGQLLGHIPTPGT-ASNCTFDQAQQRLFITGGP-----CLWMLP 303 (305)
T ss_dssp SEEEEECTTSCEEEEEECSSC-CCEEEECTTSCEEEEEETT-----EEEEEE
T ss_pred CcEEEECCCCCEEEEEECCCc-eeEEEEeCCCCEEEEEcCC-----eEEEEE
Confidence 248889986555555544332 3445777788877766643 466655
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.99 E-value=9.7e-08 Score=99.43 Aligned_cols=243 Identities=12% Similarity=0.065 Sum_probs=140.2
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~ 235 (789)
...|.|+|+++.|+++.... ..++.++..+...+....+..+ ..+.|+|||+ |+.. .
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~---~~i~~~d~~~~~~~~~~~~~~~----------~~i~~~~dG~-l~v~-~-------- 71 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPA---KKVCRWDSFTKQVQRVTMDAPV----------SSVALRQSGG-YVAT-I-------- 71 (297)
T ss_dssp EEEEEEETTTTEEEEEETTT---TEEEEEETTTCCEEEEECSSCE----------EEEEEBTTSS-EEEE-E--------
T ss_pred ccCCeEECCCCEEEEEECCC---CEEEEEECCCCcEEEEeCCCce----------EEEEECCCCC-EEEE-E--------
Confidence 34799999999998876432 3577777333333444444333 6899999999 3332 2
Q ss_pred ccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCC---CCccceEEEeeCCCCCccE
Q 003886 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~---~~~~~~~~wSPDg~~~~~~ 312 (789)
...|+++|+++++.+.+..... ......++++|||+
T Consensus 72 ------------------------------------~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~----- 110 (297)
T 3g4e_A 72 ------------------------------------GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR----- 110 (297)
T ss_dssp ------------------------------------TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC-----
T ss_pred ------------------------------------CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC-----
Confidence 1468899999888776531111 12456789999997
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
|++.......... ........||+++. + +....+.........++|||||+.|++....
T Consensus 111 l~~~~~~~~~~~~---~~~~~~~~l~~~d~-----------------~-g~~~~~~~~~~~pngi~~spdg~~lyv~~~~ 169 (297)
T 3g4e_A 111 YFAGTMAEETAPA---VLERHQGALYSLFP-----------------D-HHVKKYFDQVDISNGLDWSLDHKIFYYIDSL 169 (297)
T ss_dssp EEEEEEECCSBTT---BCCTTCEEEEEECT-----------------T-SCEEEEEEEESBEEEEEECTTSCEEEEEEGG
T ss_pred EEEecCCcccccc---cccCCCcEEEEEEC-----------------C-CCEEEEeeccccccceEEcCCCCEEEEecCC
Confidence 5665532211000 00012346899885 3 3444443333345678999999998776643
Q ss_pred CCCCCCCccccceeEEeecC--CCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEE
Q 003886 393 SSVDSGAHSATDSLHRIDWP--TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~--~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (789)
. .+|+++|++ ++.. . ....+..+ ..... ....+.+.+||+ |++.....+ .|
T Consensus 170 ~----------~~i~~~~~d~~~G~~---~-~~~~~~~~---~~~~~-------~p~g~~~d~~G~-lwva~~~~~--~v 222 (297)
T 3g4e_A 170 S----------YSVDAFDYDLQTGQI---S-NRRSVYKL---EKEEQ-------IPDGMCIDAEGK-LWVACYNGG--RV 222 (297)
T ss_dssp G----------TEEEEEEECTTTCCE---E-EEEEEEEC---CGGGC-------EEEEEEEBTTSC-EEEEEETTT--EE
T ss_pred C----------CcEEEEeccCCCCcc---c-CcEEEEEC---CCCCC-------CCCeeEECCCCC-EEEEEcCCC--EE
Confidence 2 468999874 3321 1 00011110 00001 123557888985 766544333 48
Q ss_pred EEEECCCCcEEEecCCC-CCceeEEee-ecCCEEEEEEeCCC
Q 003886 471 ISVNVSSGELLRITPAE-SNFSWSLLT-LDGDNIIAVSSSPV 510 (789)
Q Consensus 471 ~~~dl~tg~~~~lt~~~-~~~~~~~~s-~dg~~l~~~~ss~~ 510 (789)
+++|.++|++....... .......|. ++++.|+.+.....
T Consensus 223 ~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~~ 264 (297)
T 3g4e_A 223 IRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARDG 264 (297)
T ss_dssp EEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBCTT
T ss_pred EEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCCcC
Confidence 88999888865443333 234445677 77888877776543
|
| >2k2q_B Surfactin synthetase thioesterase subunit; A/B-hydrolase, NRPS, non-ribosomal peptide synthetase, type II thioesterase, antibiotic biosynthesis; NMR {Bacillus subtilis} PDB: 2ron_A | Back alignment and structure |
|---|
Probab=98.99 E-value=8.5e-10 Score=111.29 Aligned_cols=92 Identities=18% Similarity=0.186 Sum_probs=64.0
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC-
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA- 668 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~- 668 (789)
.+.|.||++||.+++ ...|......|+ .+|.|+++|+|| +|.+... ..+|+.+.++.+++.-.+
T Consensus 11 ~~~~~lv~lhg~g~~--~~~~~~~~~~L~-~~~~vi~~Dl~G---hG~S~~~---------~~~~~~~~~~~~~~~l~~~ 75 (242)
T 2k2q_B 11 SEKTQLICFPFAGGY--SASFRPLHAFLQ-GECEMLAAEPPG---HGTNQTS---------AIEDLEELTDLYKQELNLR 75 (242)
T ss_dssp TCCCEEESSCCCCHH--HHHHHHHHHHHC-CSCCCEEEECCS---SCCSCCC---------TTTHHHHHHHHTTTTCCCC
T ss_pred CCCceEEEECCCCCC--HHHHHHHHHhCC-CCeEEEEEeCCC---CCCCCCC---------CcCCHHHHHHHHHHHHHhh
Confidence 445678999996653 456776777775 469999999998 5554211 134666666665543112
Q ss_pred CCccEEEEEcCccHHHHHHHHHh------CCCce
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQ------APDKF 696 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~------~p~~~ 696 (789)
..+++.|+||||||.+++.+|.+ +|+++
T Consensus 76 ~~~~~~lvGhSmGG~iA~~~A~~~~~~~~~p~~v 109 (242)
T 2k2q_B 76 PDRPFVLFGHSMGGMITFRLAQKLEREGIFPQAV 109 (242)
T ss_dssp CCSSCEEECCSSCCHHHHHHHHHHHHHHCSSCSE
T ss_pred cCCCEEEEeCCHhHHHHHHHHHHHHHcCCCCCEE
Confidence 23689999999999999999876 56654
|
| >1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter cleavage, catalytic triad, alpha/beta hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ... | Back alignment and structure |
|---|
Probab=98.99 E-value=2.4e-10 Score=128.92 Aligned_cols=132 Identities=22% Similarity=0.191 Sum_probs=92.6
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchh-hHHHHHHHH-HCCcEEEEEcCC-CCCCCCchhhccCCCC
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YSKSLAFLS-SVGYSLLIVNYR-GSLGFGEEALQSLPGK 646 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~-~~~~~~~la-~~Gy~V~~~d~r-Gs~G~G~~~~~~~~~~ 646 (789)
+.|+..+. ++.|... .++.|+||++|||+....... .......|+ +.|++|+.+||| |..||..... ....
T Consensus 91 sedcl~ln--v~~P~~~--~~~~Pv~v~iHGG~~~~g~~~~~~~~~~~la~~~~~vvv~~nYRlg~~Gf~~~~~--~~~~ 164 (537)
T 1ea5_A 91 SEDCLYLN--IWVPSPR--PKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALHG--SQEA 164 (537)
T ss_dssp CSCCCEEE--EEECSSC--CSSEEEEEEECCSTTTCCCTTCGGGCTHHHHHHHTCEEEECCCCCHHHHHCCCTT--CSSS
T ss_pred CCcCCeEE--EeccCCC--CCCCeEEEEECCCcccCCCCCCCccChHHHHhcCCEEEEEeccCccccccccCCC--CCCC
Confidence 44665554 5677642 367899999999887543332 112345666 789999999999 3334433210 0112
Q ss_pred CCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHh--CCCceeEEEEeCCccc
Q 003886 647 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCN 707 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~--~p~~~~a~v~~~pv~~ 707 (789)
.+...+.|+.++++|+.++. ..|++||.|+|+|.||.++..++.. ...+|+++|+.+|...
T Consensus 165 ~~n~gl~D~~~al~wv~~ni~~fggdp~~vtl~G~SaGg~~~~~~~~~~~~~~lf~~~i~~Sg~~~ 230 (537)
T 1ea5_A 165 PGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSPN 230 (537)
T ss_dssp CSCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCTT
T ss_pred cCccccHHHHHHHHHHHHHHHHhCCCccceEEEecccHHHHHHHHHhCccchhhhhhheeccCCcc
Confidence 33445899999999998863 3699999999999999999988774 2358999999998653
|
| >2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A {Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A 1jmy_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-10 Score=129.73 Aligned_cols=131 Identities=21% Similarity=0.228 Sum_probs=89.4
Q ss_pred cCCCeeEEEEEEecCCCC-CCCCCcEEEEEcCCCCCCCchh-------hHHHHHHHHH-CCcEEEEEcCC-CCCCCCchh
Q 003886 570 KGAQKPFEAIFVSSSHKK-DCSCDPLIVVLHGGPHSVSLSS-------YSKSLAFLSS-VGYSLLIVNYR-GSLGFGEEA 639 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~-~~~~~P~vv~~HGg~~~~~~~~-------~~~~~~~la~-~Gy~V~~~d~r-Gs~G~G~~~ 639 (789)
+.|+..+. ++.|.... ..++.|+||++|||++...... +......|+. .|++|+.+||| |..|+....
T Consensus 77 sedcl~ln--v~~P~~~~~~~~~~PV~v~iHGGg~~~Gs~~~~~~~~~~~~~~~~la~~~~vvvV~~nYRLg~~Gfl~~~ 154 (579)
T 2bce_A 77 NEDCLYLN--IWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLSTG 154 (579)
T ss_dssp CSCCCEEE--EEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCCCS
T ss_pred CCCCCEEE--EEECCCCCCCCCCCeEEEEECCCcccCCCCCccccccccccChHHHhcCCCEEEEEeCCccccccCCcCC
Confidence 45665555 66776432 3467899999999876432221 1112345554 57999999999 433443322
Q ss_pred hccCCCCCCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHh--CCCceeEEEEeCCc
Q 003886 640 LQSLPGKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPL 705 (789)
Q Consensus 640 ~~~~~~~~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~--~p~~~~a~v~~~pv 705 (789)
....+++ ..+.|+.++++|+.++. ..|++||+|+|+|.||.++..++.. ...+|+++|+.++.
T Consensus 155 ~~~~pgn---~gl~D~~~Al~wv~~ni~~fGgDp~~Vti~G~SAGg~~~~~~~~~~~~~~lf~~ai~~Sg~ 222 (579)
T 2bce_A 155 DSNLPGN---YGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGV 222 (579)
T ss_dssp STTCCCC---HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCC
T ss_pred CCCCCCc---cchHHHHHHHHHHHHHHHHhCCCcccEEEecccccchheeccccCcchhhHHHHHHHhcCC
Confidence 1122333 34789999999998862 3699999999999999999988764 34689999999875
|
| >1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A {Galactomyces geotrichum} SCOP: c.69.1.17 | Back alignment and structure |
|---|
Probab=98.99 E-value=7.2e-10 Score=125.05 Aligned_cols=132 Identities=18% Similarity=0.197 Sum_probs=90.7
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchh-hH--HHH-HHHH-HCCcEEEEEcCCCCC-CCCc--hhhc
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YS--KSL-AFLS-SVGYSLLIVNYRGSL-GFGE--EALQ 641 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~-~~--~~~-~~la-~~Gy~V~~~d~rGs~-G~G~--~~~~ 641 (789)
+.|+..+. ++.|.+....++.|+||++|||+....... +. ... +.++ ..|++|+.+|||.++ |+.. +...
T Consensus 102 sedcl~l~--v~~P~~~~~~~~~Pviv~iHGGg~~~g~~~~~~~~~l~~~~l~~~~~~vvv~~nYRl~~~gf~~~~~~~~ 179 (544)
T 1thg_A 102 NEDCLYLN--VFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLGGDAITA 179 (544)
T ss_dssp CSCCCEEE--EEEETTCCTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH
T ss_pred CCCCeEEE--EEeCCCCCCCCCCcEEEEECCCccccCCccccCchHHHHHHhhcCCCEEEEeCCCCCCcccCCCcccccc
Confidence 44665554 678875445678999999999987654332 21 112 2233 358999999999643 2221 1111
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhC--------CCceeEEEEeCCcc
Q 003886 642 SLPGKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLC 706 (789)
Q Consensus 642 ~~~~~~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~--------p~~~~a~v~~~pv~ 706 (789)
. ..+...+.|+.++++|+.++. ..|++||+|+|+|.||++++.++... ..+|+++|+.+|..
T Consensus 180 ~---~~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~~~~~~~~~~~~~~~lf~~~i~~Sg~~ 252 (544)
T 1thg_A 180 E---GNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGGP 252 (544)
T ss_dssp H---TCTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCCC
T ss_pred c---CCCchhHHHHHHHHHHHHHHHHHhCCChhHeEEEEECHHHHHHHHHHhCCCccccccccccccceEEecccc
Confidence 1 123345899999999998862 37999999999999999998877642 45899999999853
|
| >3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A, alternative splicing, hydrolase, phosphoprotein, serine esterase; 2.00A {Homo sapiens} PDB: 3c5w_P | Back alignment and structure |
|---|
Probab=98.99 E-value=3.1e-09 Score=111.90 Aligned_cols=105 Identities=23% Similarity=0.436 Sum_probs=72.6
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHH-CCcEEEEEcCCCCCCCCchhhccCCCCCC-cccHHHHHHHHHHHHHcCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVG-SQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~-~~~~~D~~~~i~~l~~~~~~ 668 (789)
..|.||++||++.+ ...|......|++ .+|.|+++|+|| +|.+.... ...+. ....+|+.+.++.+... +
T Consensus 37 ~~p~lvllHG~~~~--~~~w~~~~~~L~~~~~~~via~Dl~G---hG~S~~~~-~~~~~~~~~a~dl~~~l~~l~~~--~ 108 (316)
T 3c5v_A 37 EGPVLLLLHGGGHS--ALSWAVFTAAIISRVQCRIVALDLRS---HGETKVKN-PEDLSAETMAKDVGNVVEAMYGD--L 108 (316)
T ss_dssp SSCEEEEECCTTCC--GGGGHHHHHHHHTTBCCEEEEECCTT---STTCBCSC-TTCCCHHHHHHHHHHHHHHHHTT--C
T ss_pred CCcEEEEECCCCcc--cccHHHHHHHHhhcCCeEEEEecCCC---CCCCCCCC-ccccCHHHHHHHHHHHHHHHhcc--C
Confidence 34789999997653 5677777778876 389999999998 56553211 11111 11244555555554321 1
Q ss_pred CCccEEEEEcCccHHHHHHHHHh--CCCceeEEEEeCCc
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPL 705 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~--~p~~~~a~v~~~pv 705 (789)
.+++.|+||||||++++.+|.+ +|+ ++++|+.++.
T Consensus 109 -~~~~~lvGhSmGG~ia~~~A~~~~~p~-v~~lvl~~~~ 145 (316)
T 3c5v_A 109 -PPPIMLIGHSMGGAIAVHTASSNLVPS-LLGLCMIDVV 145 (316)
T ss_dssp -CCCEEEEEETHHHHHHHHHHHTTCCTT-EEEEEEESCC
T ss_pred -CCCeEEEEECHHHHHHHHHHhhccCCC-cceEEEEccc
Confidence 2689999999999999999985 576 9999998764
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.99 E-value=5.6e-08 Score=104.11 Aligned_cols=246 Identities=9% Similarity=0.031 Sum_probs=121.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEec-CCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
..+...+|||||+.||...+.. +.+|+.......... ..+. ..+.|+++++.++.++..+. .
T Consensus 20 ~~V~~v~fs~dg~~la~g~~~~------~~iw~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~d~-~ 82 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILSTLKS------FEIYNVHPVAHIMSQEMRHL----------SKVRMLHRTNYVAFVTGVKE-V 82 (355)
T ss_dssp CCCCEEEECTTSSEEEEECSSE------EEEEEETTEEEEEEEECSCC----------CEEEECTTSSEEEEECSSTT-E
T ss_pred CceEEEEECCCCCEEEEEcCCE------EEEEecCCcceeeeeecCCe----------EEEEEcCCCCEEEEEECCcc-E
Confidence 4588999999999998764432 356632222222211 1122 67889999998887654321 1
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCC-ceEeccCCCCCCccceEEEeeCCCCCcc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG-EVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g-~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
...|+...+...... ..........+.++. ........|++||+.++ +.... ... ..+..+++| +.
T Consensus 83 v~iWd~~~~~~~~~~-~~~~~v~~v~~~~~~---~~~~~~~~i~i~d~~~~~~~~~~--~~~--~~~~~~~s~--~~--- 149 (355)
T 3vu4_A 83 VHIWDDVKKQDVSRI-KVDAPVKDLFLSREF---IVVSYGDVISVFKFGNPWKRITD--DIR--FGGVCEFSN--GL--- 149 (355)
T ss_dssp EEEEETTTTEEEEEE-ECSSCEEEEEECSSE---EEEEETTEEEEEESSTTCCBSSC--CEE--EEEEEEEET--TE---
T ss_pred EEEEECCCCcEEEEE-ECCCceEEEEEcCCE---EEEEEcCEEEEEECCCCceeeEE--ecc--CCceEEEEc--cE---
Confidence 122332111111000 011111112222221 11112456777777665 32211 111 333445666 34
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEEe
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLS 390 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s 390 (789)
+++.+. .....|.++|+............. ....-.. ...+..+...+...+|||||++|+..+
T Consensus 150 -la~~sg-------------~~~g~v~iwd~~~~~~~~~~~~~~-~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s 214 (355)
T 3vu4_A 150 -LVYSNE-------------FNLGQIHITKLQSSGSATTQDQGV-QQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS 214 (355)
T ss_dssp -EEEEES-------------SCTTCEEEEECCC-------------------CCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred -EEEeCC-------------CcCcEEEEEECCCCCccccccccc-cccccCcccEEEEccCCceEEEEECCCCCEEEEEe
Confidence 565521 123367788872110000000000 0000001 566777788899999999999998777
Q ss_pred cCCCCCCCCccccce-eEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEE
Q 003886 391 AKSSVDSGAHSATDS-LHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (789)
Q Consensus 391 ~~~~~~~g~~~~~~~-L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (789)
.+. . +.+||+.+++..... .. |.....+..+.|+|||+.| +++..++...
T Consensus 215 ~d~-----------~~v~iwd~~~~~~~~~~----------~~-------g~h~~~v~~~~~s~~~~~l-~s~s~d~~v~ 265 (355)
T 3vu4_A 215 QDG-----------TIIRVFKTEDGVLVREF----------RR-------GLDRADVVDMKWSTDGSKL-AVVSDKWTLH 265 (355)
T ss_dssp TTC-----------SEEEEEETTTCCEEEEE----------EC-------TTCCSCEEEEEECTTSCEE-EEEETTCEEE
T ss_pred CCC-----------CEEEEEECCCCcEEEEE----------Ec-------CCCCCcEEEEEECCCCCEE-EEEECCCEEE
Confidence 543 5 889998875542110 00 0001134567899999865 5556666666
Q ss_pred EEEE
Q 003886 470 IISV 473 (789)
Q Consensus 470 l~~~ 473 (789)
||.+
T Consensus 266 iw~~ 269 (355)
T 3vu4_A 266 VFEI 269 (355)
T ss_dssp EEES
T ss_pred EEEc
Confidence 6644
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=98.98 E-value=1.5e-08 Score=111.69 Aligned_cols=148 Identities=14% Similarity=0.146 Sum_probs=91.5
Q ss_pred ceEEEEEccCCc----eEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccch
Q 003886 273 PSLFVININSGE----VQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 348 (789)
Q Consensus 273 ~~l~v~d~~~g~----~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (789)
..|.+||+.++. ...+ ......+..++|+|+++. +++++.. ...|.++|+..
T Consensus 254 g~i~i~d~~~~~~~~~~~~~--~~~~~~v~~i~~~p~~~~----~l~tg~~--------------dg~v~vwd~~~---- 309 (430)
T 2xyi_A 254 QKLMIWDTRNNNTSKPSHTV--DAHTAEVNCLSFNPYSEF----ILATGSA--------------DKTVALWDLRN---- 309 (430)
T ss_dssp SEEEEEETTCSCSSSCSEEE--ECCSSCEEEEEECSSCTT----EEEEEET--------------TSEEEEEETTC----
T ss_pred CeEEEEECCCCCCCcceeEe--ecCCCCeEEEEeCCCCCC----EEEEEeC--------------CCeEEEEeCCC----
Confidence 678999998762 2233 233446788999999998 7777632 23688888731
Q ss_pred hhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccc----ee
Q 003886 349 ASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK----IV 424 (789)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~----~~ 424 (789)
.......+..+...+...+|+|+|+.++.....+ ..|.+||+...+....... ..
T Consensus 310 -----------~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d----------~~i~iwd~~~~~~~~~~~~~~~~~~ 368 (430)
T 2xyi_A 310 -----------LKLKLHSFESHKDEIFQVQWSPHNETILASSGTD----------RRLHVWDLSKIGEEQSTEDAEDGPP 368 (430)
T ss_dssp -----------TTSCSEEEECCSSCEEEEEECSSCTTEEEEEETT----------SCCEEEEGGGTTCCCCHHHHHHCCT
T ss_pred -----------CCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCC----------CcEEEEeCCCCccccCccccccCCc
Confidence 1234556666777889999999998755554332 3588899876332111000 00
Q ss_pred eEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003886 425 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (789)
Q Consensus 425 ~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~d 474 (789)
.+...... ....+..+.|+|+++.+++++..++...+|.++
T Consensus 369 ~~~~~~~~---------h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 369 ELLFIHGG---------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp TEEEECCC---------CSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred ceEEEcCC---------CCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence 01111000 112345778999999677777778888888765
|
| >3lcr_A Tautomycetin biosynthetic PKS; alpha-beta hydrolase, thioesterase, polyketide synthase, phosphopantetheine, transferase, hydrolase; 2.00A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.8e-09 Score=111.39 Aligned_cols=105 Identities=12% Similarity=0.138 Sum_probs=72.0
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHH-HHHHHcCC
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI-DHVIDMGL 667 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i-~~l~~~~~ 667 (789)
....|.||++||.........|......| ..||.|+++|++| +|.+... ...++++.+.+ +.+.+.
T Consensus 78 ~~~~~~lv~lhG~~~~~~~~~~~~~~~~L-~~~~~v~~~d~~G---~G~~~~~-------~~~~~~~~~~~~~~l~~~-- 144 (319)
T 3lcr_A 78 GQLGPQLILVCPTVMTTGPQVYSRLAEEL-DAGRRVSALVPPG---FHGGQAL-------PATLTVLVRSLADVVQAE-- 144 (319)
T ss_dssp CCSSCEEEEECCSSTTCSGGGGHHHHHHH-CTTSEEEEEECTT---SSTTCCE-------ESSHHHHHHHHHHHHHHH--
T ss_pred CCCCCeEEEECCCCcCCCHHHHHHHHHHh-CCCceEEEeeCCC---CCCCCCC-------CCCHHHHHHHHHHHHHHh--
Confidence 34568899999942222456777777778 7889999999998 4432211 11343433332 222222
Q ss_pred CCCccEEEEEcCccHHHHHHHHHhC---CCceeEEEEeCCcc
Q 003886 668 ANPSKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLC 706 (789)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~~~~~---p~~~~a~v~~~pv~ 706 (789)
.+..++.|+|||+||.++..++.++ +++++++|+.++..
T Consensus 145 ~~~~~~~lvGhS~Gg~vA~~~A~~~~~~~~~v~~lvl~~~~~ 186 (319)
T 3lcr_A 145 VADGEFALAGHSSGGVVAYEVARELEARGLAPRGVVLIDSYS 186 (319)
T ss_dssp HTTSCEEEEEETHHHHHHHHHHHHHHHTTCCCSCEEEESCCC
T ss_pred cCCCCEEEEEECHHHHHHHHHHHHHHhcCCCccEEEEECCCC
Confidence 2346899999999999999998887 88899999987653
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=7.5e-08 Score=102.71 Aligned_cols=100 Identities=16% Similarity=0.283 Sum_probs=68.2
Q ss_pred cccEEEEeCCC---CCeEEEEecCCCCCCeEEEEec--C-Ccee-EEEecCCCccccccCCCcccceeecCCCCEEEEEe
Q 003886 154 TGASAVVPSPS---GSKLLVVRNPENESPIQFELWS--Q-SQLE-KEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA 226 (789)
Q Consensus 154 ~~~~~~~~SPd---G~~la~~~~~~~~~~~~~~i~~--~-~~~~-~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~ 226 (789)
..+...+|||+ |++|+.....+ .+.+|+ . +... ..... ..+.| ..+.|+|||+.|+..+
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~---h~~~v------~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWAN-----DVRCWEVQDSGQTIPKAQQM---HTGPV------LDVCWSDDGSKVFTAS 105 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTS-----EEEEEEECTTSCEEEEEEEE---CSSCE------EEEEECTTSSEEEEEE
T ss_pred CceEEEEEcCCCCCceEEEEECCCC-----cEEEEEcCCCCceeEEEecc---ccCCE------EEEEECcCCCEEEEEc
Confidence 46889999999 68888776543 455662 2 3332 22221 12222 7899999999998764
Q ss_pred ecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEE--ee
Q 003886 227 EEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVW--AP 304 (789)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~w--SP 304 (789)
.+ ..|.+||+.+++...+ ......+..+.| +|
T Consensus 106 ~d--------------------------------------------g~v~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~ 139 (368)
T 3mmy_A 106 CD--------------------------------------------KTAKMWDLSSNQAIQI--AQHDAPVKTIHWIKAP 139 (368)
T ss_dssp TT--------------------------------------------SEEEEEETTTTEEEEE--EECSSCEEEEEEEECS
T ss_pred CC--------------------------------------------CcEEEEEcCCCCceee--ccccCceEEEEEEeCC
Confidence 32 5799999999987776 344556788999 88
Q ss_pred CCCCCccEEEEEe
Q 003886 305 LNEGLHQYLVFVG 317 (789)
Q Consensus 305 Dg~~~~~~l~f~~ 317 (789)
|++. |+..+
T Consensus 140 ~~~~----l~~~~ 148 (368)
T 3mmy_A 140 NYSC----VMTGS 148 (368)
T ss_dssp SCEE----EEEEE
T ss_pred CCCE----EEEcc
Confidence 8886 66555
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.97 E-value=7.8e-08 Score=116.06 Aligned_cols=175 Identities=11% Similarity=0.025 Sum_probs=102.9
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (789)
++|||+.+|... ..+.+.+++.. ..+........ ..+...+||| |++|+..+.++ .+.
T Consensus 25 fspdg~~lAsgs---------~Dg~I~lw~~~--~~~~~~~~~~~-----~~V~~l~fsp-g~~L~S~s~D~-----~v~ 82 (902)
T 2oaj_A 25 FDFTQNLLAIAT---------VTGEVHIYGQQ--QVEVVIKLEDR-----SAIKEMRFVK-GIYLVVINAKD-----TVY 82 (902)
T ss_dssp EETTTTEEEEEE---------TTSEEEEECST--TCEEEEECSSC-----CCEEEEEEET-TTEEEEEETTC-----EEE
T ss_pred ECCCCCEEEEEe---------CCCEEEEEeCC--CcEEEEEcCCC-----CCEEEEEEcC-CCEEEEEECcC-----eEE
Confidence 468888776542 23456666542 22211111111 4588999999 88888776543 567
Q ss_pred Eec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCC-----------CCCcCC
Q 003886 184 LWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG-----------SSDKDC 250 (789)
Q Consensus 184 i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 250 (789)
+|+ .++....+... +.| ..+.|+|||++|+....+.... .|+....... .....+
T Consensus 83 lWd~~~~~~~~~~~~~----~~V------~~v~~sp~g~~l~sgs~dg~V~--lwd~~~~~~~~~~i~~~~~~~~~~~~h 150 (902)
T 2oaj_A 83 VLSLYSQKVLTTVFVP----GKI------TSIDTDASLDWMLIGLQNGSMI--VYDIDRDQLSSFKLDNLQKSSFFPAAR 150 (902)
T ss_dssp EEETTTCSEEEEEECS----SCE------EEEECCTTCSEEEEEETTSCEE--EEETTTTEEEEEEECCHHHHHTCSSSC
T ss_pred EEECCCCcEEEEEcCC----CCE------EEEEECCCCCEEEEEcCCCcEE--EEECCCCccccceeccccccccccccC
Confidence 773 44444333322 223 7899999999999887665432 3332221110 112334
Q ss_pred CCCCCcceeeCCc-ccccCCccCceEEEEEccCCceEec-cCC-----CC-----------CCccceEEEeeCCCCCccE
Q 003886 251 NSWKGQGDWEEDW-GETYAGKRQPSLFVININSGEVQAV-KGI-----PK-----------SLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 251 ~~~~~~~~~~~d~-g~~~~~~~~~~l~v~d~~~g~~~~l-~~~-----~~-----------~~~~~~~~wSPDg~~~~~~ 312 (789)
...+....|.|+. +..+++..+..| +||+.+++.... ... +. ...+..++|+|||+.
T Consensus 151 ~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~---- 225 (902)
T 2oaj_A 151 LSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLH---- 225 (902)
T ss_dssp CCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSE----
T ss_pred CCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCE----
Confidence 4555567788853 344556667788 999998876533 111 00 134778999999997
Q ss_pred EEEEe
Q 003886 313 LVFVG 317 (789)
Q Consensus 313 l~f~~ 317 (789)
|+..+
T Consensus 226 lasgs 230 (902)
T 2oaj_A 226 IITIH 230 (902)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77665
|
| >1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester acylh hydrolase; HET: NAG F23; 1.40A {Candida cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A* 1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A* 1gz7_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=9.3e-10 Score=123.86 Aligned_cols=131 Identities=19% Similarity=0.201 Sum_probs=89.9
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchh-hH--HHH-HHHH-HCCcEEEEEcCCCCC-CCCc--hhhc
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YS--KSL-AFLS-SVGYSLLIVNYRGSL-GFGE--EALQ 641 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~-~~--~~~-~~la-~~Gy~V~~~d~rGs~-G~G~--~~~~ 641 (789)
+.|...+ .++.|.+....++.|+||++|||+....... +. ..+ ..++ ..|++|+.+|||.++ |+.. +...
T Consensus 94 sedcl~l--~v~~P~~~~~~~~~Pv~v~iHGGg~~~g~~~~~~~~~l~~~~~~~~~~~vvv~~nYRl~~~gf~~~~~~~~ 171 (534)
T 1llf_A 94 SEDCLTI--NVVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIKA 171 (534)
T ss_dssp CSCCCEE--EEEECTTCCTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH
T ss_pred CCCCeEE--EEEECCCCCCCCCceEEEEEeCCCcccCCCcccCchHHHHHHHhcCCCEEEEEeCCCCCCCCCCCcccccc
Confidence 3455554 5778875445678999999999987544332 21 111 1222 468999999999532 3321 1111
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhC--------CCceeEEEEeCCc
Q 003886 642 SLPGKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPL 705 (789)
Q Consensus 642 ~~~~~~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~--------p~~~~a~v~~~pv 705 (789)
.. .+...+.|+.++++|+.++. ..|++||+|+|+|+||+++..++... +.+|+++|+.+|.
T Consensus 172 ~~---~~n~gl~D~~~Al~wv~~ni~~fggDp~~Vti~G~SaGg~~~~~~l~~~~~~~~~~~~~lf~~ai~~Sg~ 243 (534)
T 1llf_A 172 EG---SGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp HT---CTTHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred cC---CCchhHHHHHHHHHHHHHHHHHhCCCcccEEEEEECHhHHHHHHHHcCCCccccccccchhHhHhhhccC
Confidence 11 23345899999999998852 36999999999999999888776653 4689999999984
|
| >2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase; HET: TFC; 2.70A {Trichoplusia NI} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-10 Score=130.72 Aligned_cols=112 Identities=24% Similarity=0.286 Sum_probs=83.0
Q ss_pred CcEEEEEcCCCCCCCchhh-HHHHHHHHHCCcEEEEEcCCCC-CCCCchhhccCCCCCCcccHHHHHHHHHHHHHcC---
Q 003886 592 DPLIVVLHGGPHSVSLSSY-SKSLAFLSSVGYSLLIVNYRGS-LGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG--- 666 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~-~~~~~~la~~Gy~V~~~d~rGs-~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~--- 666 (789)
.|+||++|||+........ ......|+++|++|+.+|||.+ .|+...... ...+...+.|+.++++|+.++.
T Consensus 115 ~Pviv~iHGGg~~~g~~~~~~~~~~~l~~~g~vvv~~nYRl~~~Gf~~~~~~---~~~~n~gl~D~~~al~wv~~~i~~f 191 (551)
T 2fj0_A 115 LPVLVFIHGGGFAFGSGDSDLHGPEYLVSKDVIVITFNYRLNVYGFLSLNST---SVPGNAGLRDMVTLLKWVQRNAHFF 191 (551)
T ss_dssp EEEEEEECCSTTTSCCSCTTTCBCTTGGGGSCEEEEECCCCHHHHHCCCSSS---SCCSCHHHHHHHHHHHHHHHHTGGG
T ss_pred CCEEEEEcCCccccCCCcccccCHHHHHhCCeEEEEeCCcCCccccccCccc---CCCCchhHHHHHHHHHHHHHHHHHh
Confidence 8999999998864333221 1234567889999999999942 244332211 1233455899999999998862
Q ss_pred CCCCccEEEEEcCccHHHHHHHHHh--CCCceeEEEEeCCcc
Q 003886 667 LANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 706 (789)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~~~~--~p~~~~a~v~~~pv~ 706 (789)
..|++||+|+|+|.||.++..++.. .+.+|+++|+.+|..
T Consensus 192 ggDp~~v~l~G~SaGg~~~~~~~~~~~~~~lf~~~i~~sg~~ 233 (551)
T 2fj0_A 192 GGRPDDVTLMGQSAGAAATHILSLSKAADGLFRRAILMSGTS 233 (551)
T ss_dssp TEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCT
T ss_pred CCChhhEEEEEEChHHhhhhccccCchhhhhhhheeeecCCc
Confidence 3699999999999999999988875 356899999999863
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.7e-08 Score=119.84 Aligned_cols=236 Identities=12% Similarity=0.128 Sum_probs=142.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCC--CCEEEEEeecC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEP 229 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpD--g~~la~~~~~~ 229 (789)
+.+..++|||||++|+.....+ .+.+|+ .+....+..+. +..+.| ..+.|+|+ |+.|+..+.+
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg-----~I~vwd~~~~~~~~~~~l~-~h~~~V------~~l~~s~~~~~~~l~s~s~D- 76 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDK-----TIKIFEVEGETHKLIDTLT-GHEGPV------WRVDWAHPKFGTILASCSYD- 76 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTT-----EEEEEEEETTEEEEEEEEC-CCSSCE------EEEEECCTTSCSEEEEEETT-
T ss_pred ceeEEEEECCCCCeEEEEECCC-----cEEEEecCCCCCccceecc-CCcCce------EEEEecCCCCCCEEEEEeCC-
Confidence 4588899999999999876543 455662 22222222222 223334 78999998 8888876543
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC-CCCCCccceEEEeeC--C
Q 003886 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG-IPKSLSVGQVVWAPL--N 306 (789)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~-~~~~~~~~~~~wSPD--g 306 (789)
..|.+||+.+++...+.. ......+..+.|+|+ |
T Consensus 77 -------------------------------------------g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~ 113 (753)
T 3jro_A 77 -------------------------------------------GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYG 113 (753)
T ss_dssp -------------------------------------------SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC
T ss_pred -------------------------------------------CeEEEEECCCCcccccccccCCCCCeEEEEECCCCCC
Confidence 568999999886322210 233456789999999 7
Q ss_pred CCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecC-----
Q 003886 307 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSP----- 381 (789)
Q Consensus 307 ~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~Sp----- 381 (789)
+. ++..+ .+..|.++|+... .......+..+...+....|+|
T Consensus 114 ~~----l~sgs---------------~dg~I~vwdl~~~--------------~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 114 PL----LLVAS---------------SDGKVSVVEFKEN--------------GTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp SE----EEEEE---------------TTSEEEEEECCSS--------------SCCCCEEEECCSSCEEEEEECCCC---
T ss_pred CE----EEEEe---------------CCCcEEEEEeecC--------------CCcceeEeecCCCceEEEEecCccccc
Confidence 76 66555 2336888887210 1123344556666788899999
Q ss_pred --------CCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCcccc
Q 003886 382 --------DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 453 (789)
Q Consensus 382 --------DG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~ 453 (789)
||+.|+..+.+. .|++||+.++.... ........ ....+..+.|+|
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg-----------~I~iwd~~~~~~~~------~~~~~~~~---------h~~~V~~l~~sp 214 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADN-----------LVKIWKYNSDAQTY------VLESTLEG---------HSDWVRDVAWSP 214 (753)
T ss_dssp ------CGGGCCEEEEETTS-----------CEEEEEEETTTTEE------EEEEEECC---------CSSCEEEEEECC
T ss_pred ccccccCCCCCEEEEEECCC-----------eEEEEeccCCcccc------eeeeeecC---------CCCcEEEEEecc
Confidence 688888777543 48899887653210 11111100 011345678999
Q ss_pred C---CCEEEEEEEeCCeEEEEEEECCCCcE--E-EecC---CCCCceeEEeeecCCEEEEEEe
Q 003886 454 D---GCTMLLSSIWGSSQVIISVNVSSGEL--L-RITP---AESNFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 454 D---g~~l~~~~~~~~~~~l~~~dl~tg~~--~-~lt~---~~~~~~~~~~s~dg~~l~~~~s 507 (789)
+ ++ +++++..++...+|.++ +++. . .+.. ....+....|+++|+.++....
T Consensus 215 ~~~~~~-~l~s~s~Dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~ 274 (753)
T 3jro_A 215 TVLLRS-YLASVSQDRTCIIWTQD--NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 274 (753)
T ss_dssp CCSSSE-EEEEEESSSCEEEEEES--SSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS
T ss_pred CCCCCC-EEEEEecCCEEEEecCC--CCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC
Confidence 9 55 55677777776666554 4421 1 1111 1223344578898887655443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.5e-08 Score=102.35 Aligned_cols=239 Identities=16% Similarity=0.110 Sum_probs=137.1
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
.+...+|||+|++||..+..+ .+.+|+ .++..+....... ....++++++.|+..+.+....
T Consensus 69 ~V~~v~~~~~~~~l~sgs~Dg-----~v~iw~~~~~~~~~~~~~h~~-----------~~~~~~~~~~~l~s~~~~~~~~ 132 (318)
T 4ggc_A 69 YISSVAWIKEGNYLAVGTSSA-----EVQLWDVQQQKRLRNMTSHSA-----------RVGSLSWNSYILSSGSRSGHIH 132 (318)
T ss_dssp CEEEEEECTTSSEEEEEETTS-----EEEEEETTTTEEEEEEECCSS-----------CEEEEEEETTEEEEEETTSEEE
T ss_pred eEEEEEECCCCCEEEEEECCC-----cEEEeecCCceeEEEecCccc-----------eEEEeecCCCEEEEEecCCceE
Confidence 478899999999999876654 567773 4443333322111 2356777788777655443211
Q ss_pred CCCccCCCC-CCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEecc---CCCCCCccceEEEeeCCCC
Q 003886 233 KPTFSLGST-KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK---GIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 233 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~---~~~~~~~~~~~~wSPDg~~ 308 (789)
.+..... ........+........+.++....+++..+..|.+||+.+++..... .......+....|+|++..
T Consensus 133 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 210 (318)
T 4ggc_A 133 --HHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN 210 (318)
T ss_dssp --EEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTT
T ss_pred --eeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCc
Confidence 1110000 000111122222223345555444445556788999999887532110 0222335678899999998
Q ss_pred CccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEE
Q 003886 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVF 388 (789)
Q Consensus 309 ~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~ 388 (789)
++..+... ....|.++|. ...................|+|+++.++.
T Consensus 211 ----~~~~~~~~------------~~~~i~lwd~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 211 ----VLATGGGT------------SDRHIRIWNV-----------------CSGACLSAVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp ----EEEEEECT------------TTCEEEEEET-----------------TTCCEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred ----EEEEEecC------------CCCEEEEEec-----------------ccccccccccceeeeeeeeecccccceEE
Confidence 77654221 2235777776 34444444444455778899999999988
Q ss_pred EecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeE
Q 003886 389 LSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 468 (789)
Q Consensus 389 ~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 468 (789)
.+... ...|++||+.+++......+. ...+..+.|+|||+.| +++..++..
T Consensus 258 ~sg~~---------d~~i~iwd~~~~~~~~~l~gH-------------------~~~V~~l~~spdg~~l-~S~s~D~~v 308 (318)
T 4ggc_A 258 GHGFA---------QNQLVIWKYPTMAKVAELKGH-------------------TSRVLSLTMSPDGATV-ASAAADETL 308 (318)
T ss_dssp EECTT---------TCCEEEEETTTCCEEEEECCC-------------------SSCEEEEEECTTSSCE-EEEETTTEE
T ss_pred EEEcC---------CCEEEEEECCCCcEEEEEcCC-------------------CCCEEEEEEcCCCCEE-EEEecCCeE
Confidence 76432 246999999876542111111 1134567899999855 677777877
Q ss_pred EEEEE
Q 003886 469 VIISV 473 (789)
Q Consensus 469 ~l~~~ 473 (789)
.||.+
T Consensus 309 ~iWd~ 313 (318)
T 4ggc_A 309 RLWRC 313 (318)
T ss_dssp EEECC
T ss_pred EEEEC
Confidence 77743
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.7e-07 Score=99.06 Aligned_cols=236 Identities=14% Similarity=0.094 Sum_probs=134.6
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
...|+|+|+++.|+++...+ .+++.++ .+++. +.+..+..+ ..+.|+|||+.++.. .
T Consensus 51 ~egp~~~~~~~~l~~~d~~~---~~i~~~d~~~~~~-~~~~~~~~v----------~~i~~~~dg~l~v~~--~------ 108 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILE---RELHELHLASGRK-TVHALPFMG----------SALAKISDSKQLIAS--D------ 108 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGG---TEEEEEETTTTEE-EEEECSSCE----------EEEEEEETTEEEEEE--T------
T ss_pred CcCCeEeCCCCEEEEEECCC---CEEEEEECCCCcE-EEEECCCcc----------eEEEEeCCCeEEEEE--C------
Confidence 35789999999998886442 3577777 44443 333333333 688999999865542 1
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCC---CCccceEEEeeCCCCCcc
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK---SLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~---~~~~~~~~wSPDg~~~~~ 311 (789)
..|+++|+++|+.+.+..... ...+..+.++|||+
T Consensus 109 --------------------------------------~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~---- 146 (326)
T 2ghs_A 109 --------------------------------------DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA---- 146 (326)
T ss_dssp --------------------------------------TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC----
T ss_pred --------------------------------------CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC----
Confidence 248999999988776632211 12456789999997
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEec
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
+++....... ......||+++ . ++.+.+.........++|||||+.|++...
T Consensus 147 -l~v~~~~~~~--------~~~~~~l~~~~-~------------------g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 147 -LWIGTMGRKA--------ETGAGSIYHVA-K------------------GKVTKLFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp -EEEEEEETTC--------CTTCEEEEEEE-T------------------TEEEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred -EEEEeCCCcC--------CCCceEEEEEe-C------------------CcEEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence 5555422110 01224688887 2 223333322233457899999999887653
Q ss_pred CCCCCCCCccccceeEEeecC--CC-CCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeE
Q 003886 392 KSSVDSGAHSATDSLHRIDWP--TN-GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 468 (789)
Q Consensus 392 ~~~~~~g~~~~~~~L~~~d~~--~~-~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 468 (789)
.. ..|+++|+. ++ .... ...+..+ ..... ....+.+.+||+ |++..... .
T Consensus 199 ~~----------~~I~~~d~~~~~Gl~~~~----~~~~~~~---~~~~~-------~p~gi~~d~~G~-lwva~~~~--~ 251 (326)
T 2ghs_A 199 KV----------NRLMRVPLDARTGLPTGK----AEVFIDS---TGIKG-------GMDGSVCDAEGH-IWNARWGE--G 251 (326)
T ss_dssp TT----------CEEEEEEBCTTTCCBSSC----CEEEEEC---TTSSS-------EEEEEEECTTSC-EEEEEETT--T
T ss_pred CC----------CEEEEEEcccccCCcccC----ceEEEEC---CCCCC-------CCCeeEECCCCC-EEEEEeCC--C
Confidence 32 469999986 43 2110 0011110 00001 112456778886 65554322 3
Q ss_pred EEEEEECCCCcEEEecCCCCCceeEEee-ecCCEEEEEEeCCC
Q 003886 469 VIISVNVSSGELLRITPAESNFSWSLLT-LDGDNIIAVSSSPV 510 (789)
Q Consensus 469 ~l~~~dl~tg~~~~lt~~~~~~~~~~~s-~dg~~l~~~~ss~~ 510 (789)
.|+++|.++..+..+...........|+ ++++.|+++.....
T Consensus 252 ~v~~~d~~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 252 AVDRYDTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp EEEEECTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred EEEEECCCCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence 5888888444444554333334445676 77787777665543
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.94 E-value=6e-08 Score=103.44 Aligned_cols=238 Identities=14% Similarity=0.094 Sum_probs=126.7
Q ss_pred eeEEEEEEeecCCCCccceeecCCcceecccEEEEeCC-CCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccc
Q 003886 126 KKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSP-SGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHG 202 (789)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g 202 (789)
...+.++++.. +.....+.... ..+....|+| +|+.|+.....+ .+.+| ..++....+.......+
T Consensus 94 dg~i~v~d~~~-~~~~~~~~~~~-----~~i~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~ 162 (366)
T 3k26_A 94 RGIIRIINPIT-MQCIKHYVGHG-----NAINELKFHPRDPNLLLSVSKDH-----ALRLWNIQTDTLVAIFGGVEGHRD 162 (366)
T ss_dssp TCEEEEECTTT-CCEEEEEESCC-----SCEEEEEECSSCTTEEEEEETTS-----CEEEEETTTTEEEEEECSTTSCSS
T ss_pred CCEEEEEEchh-ceEeeeecCCC-----CcEEEEEECCCCCCEEEEEeCCC-----eEEEEEeecCeEEEEecccccccC
Confidence 34677776532 22222333222 4588999999 899888876543 35566 33444433321112222
Q ss_pred cccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccC
Q 003886 203 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 282 (789)
Q Consensus 203 ~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~ 282 (789)
.+ ..+.|+|||+.|+..+.+ ..|.+||+.+
T Consensus 163 ~v------~~~~~~~~~~~l~~~~~d--------------------------------------------g~i~i~d~~~ 192 (366)
T 3k26_A 163 EV------LSADYDLLGEKIMSCGMD--------------------------------------------HSLKLWRINS 192 (366)
T ss_dssp CE------EEEEECTTSSEEEEEETT--------------------------------------------SCEEEEESCS
T ss_pred ce------eEEEECCCCCEEEEecCC--------------------------------------------CCEEEEECCC
Confidence 23 789999999998876543 3455666555
Q ss_pred CceEecc---------------------------CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCc
Q 003886 283 GEVQAVK---------------------------GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 335 (789)
Q Consensus 283 g~~~~l~---------------------------~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~ 335 (789)
++..... .......+..+.|+ ++. |+..+ ...
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~----l~~~~---------------~d~ 251 (366)
T 3k26_A 193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL----ILSKS---------------CEN 251 (366)
T ss_dssp HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE----EEEEC---------------SSS
T ss_pred CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE----EEEEe---------------cCC
Confidence 4321100 01123456678888 554 55444 223
Q ss_pred ceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCC--CCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 336 ALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPD--GKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 336 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpD--G~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
.|.++|+......-.... ...........+..+...+...+|||| |+.|+..+.+. .|++||+.+
T Consensus 252 ~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg-----------~i~vwd~~~ 318 (366)
T 3k26_A 252 AIVCWKPGKMEDDIDKIK--PSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVG-----------KLYVWDLEV 318 (366)
T ss_dssp EEEEEEESSTTCCGGGCC--TTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTS-----------CEEEEECCS
T ss_pred EEEEEeCCCccccccccc--cCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCC-----------cEEEEECCC
Confidence 577777632100000000 000000113344445566888999999 99888776442 599999987
Q ss_pred CCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003886 414 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (789)
Q Consensus 414 ~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (789)
+...... +..+... . ....+..+.|+|||+.| +++..++...+|.
T Consensus 319 ~~~~~~~-----~~~~~~~----~----~~~~v~~~~~s~~~~~l-~s~~~dg~i~iwd 363 (366)
T 3k26_A 319 EDPHKAK-----CTTLTHH----K----CGAAIRQTSFSRDSSIL-IAVCDDASIWRWD 363 (366)
T ss_dssp SSGGGCE-----EEEECCT----T----CCSCEEEEEECTTSSEE-EEEETTSEEEEEE
T ss_pred CCCcccc-----ceEEccc----c----cCCceEEEEeCCCCCeE-EEEeCCCEEEEEE
Confidence 6542100 0000000 0 01234577899999865 5556666655654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.6e-07 Score=103.10 Aligned_cols=230 Identities=12% Similarity=0.085 Sum_probs=133.9
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
.+...+|||||++||..+..+ .+.+|+ .++..+... +..+ .-.++++|++.|+..+.
T Consensus 149 ~V~sv~fspdg~~lasgs~Dg-----~v~iWd~~~~~~~~~~~---~h~~--------~v~~~s~~~~~l~sgs~----- 207 (420)
T 4gga_A 149 YISSVAWIKEGNYLAVGTSSA-----EVQLWDVQQQKRLRNMT---SHSA--------RVGSLSWNSYILSSGSR----- 207 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEEC---CCSS--------CEEEEEEETTEEEEEET-----
T ss_pred cEEEEEECCCCCEEEEEECCC-----eEEEEEcCCCcEEEEEe---CCCC--------ceEEEeeCCCEEEEEeC-----
Confidence 488999999999999876654 466773 333333222 1111 12334556776665433
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCce--EeccCCCCCCccceEEEeeCCCCCc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV--QAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~--~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
...+.++|...... ..+ ......+....|+|+|+.
T Consensus 208 ---------------------------------------d~~i~~~d~~~~~~~~~~~--~~h~~~~~~~~~~~~g~~-- 244 (420)
T 4gga_A 208 ---------------------------------------SGHIHHHDVRVAEHHVATL--SGHSQEVCGLRWAPDGRH-- 244 (420)
T ss_dssp ---------------------------------------TSEEEEEETTSSSCEEEEE--ECCSSCEEEEEECTTSSE--
T ss_pred ---------------------------------------CCceeEeeecccceeeEEe--cccccceeeeeecCCCCe--
Confidence 24677777665432 233 222335668899999997
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEe
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s 390 (789)
++..+. +..+.+++..... ...........+...+...+|+|++..++.+.
T Consensus 245 --l~s~~~---------------D~~v~i~~~~~~~------------~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~ 295 (420)
T 4gga_A 245 --LASGGN---------------DNLVNVWPSAPGE------------GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG 295 (420)
T ss_dssp --EEEEET---------------TSCEEEEESSCCS------------SCSCCSEEECCCSSCEEEEEECTTCTTEEEEE
T ss_pred --eeeeec---------------cccceEEeecccc------------ccceeeeeecccCCceeeeeeCCCcccEEEEE
Confidence 776652 2356677762100 01112334455566788899999988776654
Q ss_pred cCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEE
Q 003886 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (789)
Q Consensus 391 ~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (789)
... ....|.+||+.++......... ..+....|+++++.++..+. .....|
T Consensus 296 ~gs--------~D~~I~iwd~~t~~~~~~~~~~--------------------~~v~~~~~~~~~~~lv~~sg-~~d~~I 346 (420)
T 4gga_A 296 GGT--------SDRHIRIWNVCSGACLSAVDAH--------------------SQVCSILWSPHYKELISGHG-FAQNQL 346 (420)
T ss_dssp ECT--------TTCEEEEEETTTTEEEEEEECS--------------------SCEEEEEEETTTTEEEEEEC-TTTCCE
T ss_pred eec--------CCCEEEEEeCCccccceeeccc--------------------cceeeeeecCCCCeEEEEEe-cCCCEE
Confidence 221 1246999998875542111000 12335679999998866542 223346
Q ss_pred EEEECCCCcEEEecCCC-CCceeEEeeecCCEEEEEE
Q 003886 471 ISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 471 ~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~ 506 (789)
..+|+.+++......++ ..+....|++||+.|+...
T Consensus 347 ~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s 383 (420)
T 4gga_A 347 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA 383 (420)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 66688788765544433 3455567899988765433
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=98.93 E-value=6.8e-08 Score=101.87 Aligned_cols=195 Identities=12% Similarity=0.085 Sum_probs=111.1
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCcc---ceeecCCcceecccEEEEeCC--CCCeEEEEecCCCC
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV---TFQWAPFPVEMTGASAVVPSP--SGSKLLVVRNPENE 177 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~lt~~~~~~~~~~~~~~~~SP--dG~~la~~~~~~~~ 177 (789)
.++|||+.++... ..+.+.++++........ .+.... ..+...+|+| ||+.|+.....+
T Consensus 18 ~~~~~~~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~d~~~l~s~~~dg-- 81 (351)
T 3f3f_A 18 VYDFYGRHVATCS---------SDQHIKVFKLDKDTSNWELSDSWRAHD-----SSIVAIDWASPEYGRIIASASYDK-- 81 (351)
T ss_dssp EECSSSSEEEEEE---------TTSEEEEEEECSSSCCEEEEEEEECCS-----SCEEEEEECCGGGCSEEEEEETTS--
T ss_pred EEcCCCCEEEEee---------CCCeEEEEECCCCCCcceecceeccCC-----CcEEEEEEcCCCCCCEEEEEcCCC--
Confidence 3468998776542 234566666643322211 122222 4588999999 699998876643
Q ss_pred CCeEEEEe--cCCce-------eEEEecCCCccccccCCCcccceeecCC--CCEEEEEeecCCCCCCCccCCCCCCCCC
Q 003886 178 SPIQFELW--SQSQL-------EKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSS 246 (789)
Q Consensus 178 ~~~~~~i~--~~~~~-------~~~~~~~~~~~g~v~~d~~~~~~~wSpD--g~~la~~~~~~~~~~~~~~~~~~~~~~~ 246 (789)
.+.+| ..++. ..+.... ...+.+ ..+.|+|+ ++.|+..+.+
T Consensus 82 ---~v~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~v------~~~~~~~~~~~~~l~~~~~d------------------ 133 (351)
T 3f3f_A 82 ---TVKLWEEDPDQEECSGRRWNKLCTLN-DSKGSL------YSVKFAPAHLGLKLACLGND------------------ 133 (351)
T ss_dssp ---CEEEEEECTTSCTTSSCSEEEEEEEC-CCSSCE------EEEEECCGGGCSEEEEEETT------------------
T ss_pred ---eEEEEecCCCcccccccCcceeeeec-ccCCce------eEEEEcCCCCCcEEEEecCC------------------
Confidence 34455 22211 2222221 222223 78999999 9988876443
Q ss_pred CcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEec----------c--CCCCCCccceEEEeeC---CCCCcc
Q 003886 247 DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV----------K--GIPKSLSVGQVVWAPL---NEGLHQ 311 (789)
Q Consensus 247 ~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l----------~--~~~~~~~~~~~~wSPD---g~~~~~ 311 (789)
..|.+||+.+++.... . .......+..+.|+|+ ++.
T Consensus 134 --------------------------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--- 184 (351)
T 3f3f_A 134 --------------------------GILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEK--- 184 (351)
T ss_dssp --------------------------CEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCE---
T ss_pred --------------------------CcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcE---
Confidence 4677888776643211 0 0122335678999998 664
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC---eeecCCCCCccCcceecCCC----C
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESISSAFFPRFSPDG----K 384 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~Lt~~~~~~~~p~~SpDG----~ 384 (789)
|+..+. . ..+...+. ..+. ...+..+...+...+|+|+| +
T Consensus 185 -l~~~~~-~--------------~~~~~~~~-----------------~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~ 231 (351)
T 3f3f_A 185 -LAVSAL-E--------------QAIIYQRG-----------------KDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ 231 (351)
T ss_dssp -EEEEET-T--------------EEEEEEEC-----------------TTSCEEEEEECCCCCSCEEEEEECCCSSCSSE
T ss_pred -EEEecC-C--------------CcEEEEcc-----------------CCCceeeeeecCCCCcceeEEEECCCCCCcce
Confidence 555441 1 12333332 2233 34455566678899999999 6
Q ss_pred EEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 385 ~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
.|+..+.+. .|.+||+..+
T Consensus 232 ~l~s~~~dg-----------~i~iwd~~~~ 250 (351)
T 3f3f_A 232 LIATGCKDG-----------RIRIFKITEK 250 (351)
T ss_dssp EEEEEETTS-----------CEEEEEEEEC
T ss_pred EEEEEcCCC-----------eEEEEeCCCC
Confidence 666655442 4888887654
|
| >1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse, membrane, nerve, muscle neurotransmitter degradation, glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-09 Score=124.72 Aligned_cols=118 Identities=17% Similarity=0.167 Sum_probs=83.5
Q ss_pred CCCCcEEEEEcCCCCCCCchh-hHHHHHHHHH-CCcEEEEEcCC-CCCCCCchhhc----cCCCCCCcccHHHHHHHHHH
Q 003886 589 CSCDPLIVVLHGGPHSVSLSS-YSKSLAFLSS-VGYSLLIVNYR-GSLGFGEEALQ----SLPGKVGSQDVNDVLTAIDH 661 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~-~~~~~~~la~-~Gy~V~~~d~r-Gs~G~G~~~~~----~~~~~~~~~~~~D~~~~i~~ 661 (789)
.++.|+||++|||+....... .......|++ .|++|+.+||| |.-||...... ......+...+.|+.++++|
T Consensus 138 ~~~~PV~v~iHGGg~~~g~~~~~~~~~~~l~~~~~~vvv~~nYRlg~~Gfl~~~~~~~~~~~~~~~~n~gl~D~~~al~w 217 (585)
T 1dx4_A 138 TNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNVGLWDQALAIRW 217 (585)
T ss_dssp CSSEEEEEEECCSTTTCCCTTCGGGCCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcccCCCCCCCCCCchhhhccCCEEEEEecccccchhhcccccccccccCCCCCCcccHHHHHHHHHH
Confidence 467899999999886543332 1122345654 78999999999 54455432100 01122334448899999999
Q ss_pred HHHcC---CCCCccEEEEEcCccHHHHHHHHHhC--CCceeEEEEeCCcc
Q 003886 662 VIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 706 (789)
Q Consensus 662 l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~--p~~~~a~v~~~pv~ 706 (789)
+.++. ..|+++|.|+|+|.||.++..++... ..+|+++|+.+|..
T Consensus 218 v~~ni~~fggDp~~vti~G~SaGg~~v~~~~~~~~~~~lf~~ai~~Sg~~ 267 (585)
T 1dx4_A 218 LKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTM 267 (585)
T ss_dssp HHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCT
T ss_pred HHHHHHHhCCCcceeEEeecchHHHHHHHHHhCCcccchhHhhhhhcccc
Confidence 99863 36899999999999999998887742 36899999999864
|
| >1kez_A Erythronolide synthase; polyketide synthase, modular polyketide synthase, thioesterase, 6-DEB, TE, DEBS, alpha, beta-hydrolase; 2.80A {Saccharopolyspora erythraea} SCOP: c.69.1.22 PDB: 1mo2_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3.4e-09 Score=110.82 Aligned_cols=106 Identities=13% Similarity=0.082 Sum_probs=75.8
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHH-HHHHcC
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAID-HVIDMG 666 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~-~l~~~~ 666 (789)
.....|.||++||.+.+.....|......|. .+|.|+.+|++| +|.+.. ....++++.+.+. .+.+.
T Consensus 63 ~~~~~~~lvllhG~~~~~~~~~~~~~~~~l~-~~~~v~~~d~~G---~G~s~~-------~~~~~~~~a~~~~~~l~~~- 130 (300)
T 1kez_A 63 DGPGEVTVICCAGTAAISGPHEFTRLAGALR-GIAPVRAVPQPG---YEEGEP-------LPSSMAAVAAVQADAVIRT- 130 (300)
T ss_dssp CCSCSSEEEECCCSSTTCSTTTTHHHHHHTS-SSCCBCCCCCTT---SSTTCC-------BCSSHHHHHHHHHHHHHHH-
T ss_pred CCCCCCeEEEECCCcccCcHHHHHHHHHhcC-CCceEEEecCCC---CCCCCC-------CCCCHHHHHHHHHHHHHHh-
Confidence 3456789999999776432356666666664 469999999998 444321 1224555555443 45444
Q ss_pred CCCCccEEEEEcCccHHHHHHHHHhCC---CceeEEEEeCCcc
Q 003886 667 LANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLC 706 (789)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~~~~~p---~~~~a~v~~~pv~ 706 (789)
.+.+++.|+|||+||.+++.++.++| ++++++|+.++..
T Consensus 131 -~~~~~~~LvGhS~GG~vA~~~A~~~p~~g~~v~~lvl~~~~~ 172 (300)
T 1kez_A 131 -QGDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDVYP 172 (300)
T ss_dssp -CSSCCEEEECCTHHHHHHHHHHHHTTTTTCCCSEEECBTCCC
T ss_pred -cCCCCEEEEEECHhHHHHHHHHHHHHhcCCCccEEEEECCCC
Confidence 45578999999999999999999987 4899999998864
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3.6e-08 Score=103.69 Aligned_cols=247 Identities=11% Similarity=0.096 Sum_probs=138.1
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCCCC-ccceeecCCcceecccEEEEeCCC--CCeEEEEecCCCCCCe
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENEN-SVTFQWAPFPVEMTGASAVVPSPS--GSKLLVVRNPENESPI 180 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~lt~~~~~~~~~~~~~~~~SPd--G~~la~~~~~~~~~~~ 180 (789)
.+|||++++-.. ..+.+.++++...... ...+..+. +.+...+|+|+ |+.|+..+..+
T Consensus 21 ~s~~g~~lasgs---------~D~~v~lwd~~~~~~~~~~~l~gH~-----~~V~~v~~~~~~~~~~l~s~s~D~----- 81 (316)
T 3bg1_A 21 MDYYGTRLATCS---------SDRSVKIFDVRNGGQILIADLRGHE-----GPVWQVAWAHPMYGNILASCSYDR----- 81 (316)
T ss_dssp ECGGGCEEEEEE---------TTTEEEEEEEETTEEEEEEEEECCS-----SCEEEEEECCGGGSSCEEEEETTS-----
T ss_pred EcCCCCEEEEEe---------CCCeEEEEEecCCCcEEEEEEcCCC-----ccEEEEEeCCCCCCCEEEEEECCC-----
Confidence 368888775432 2345666665332111 12233232 45888999974 88888876553
Q ss_pred EEEEec--CCceeEEEecCCCccccccCCCcccceeecCC--CCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCc
Q 003886 181 QFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ 256 (789)
Q Consensus 181 ~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpD--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (789)
...+|+ .++......+. +..+.| ..++|+|| |+.|+..+.+
T Consensus 82 ~v~iWd~~~~~~~~~~~~~-~h~~~V------~~v~~~p~~~g~~lasgs~D---------------------------- 126 (316)
T 3bg1_A 82 KVIIWREENGTWEKSHEHA-GHDSSV------NSVCWAPHDYGLILACGSSD---------------------------- 126 (316)
T ss_dssp CEEEECCSSSCCCEEEEEC-CCSSCC------CEEEECCTTTCSCEEEECSS----------------------------
T ss_pred EEEEEECCCCcceEEEEcc-CCCCce------EEEEECCCCCCcEEEEEcCC----------------------------
Confidence 466773 33322332221 122223 78999998 7777765433
Q ss_pred ceeeCCcccccCCccCceEEEEEccCCc-eEeccC-CCCCCccceEEEeeCC-----------------CCCccEEEEEe
Q 003886 257 GDWEEDWGETYAGKRQPSLFVININSGE-VQAVKG-IPKSLSVGQVVWAPLN-----------------EGLHQYLVFVG 317 (789)
Q Consensus 257 ~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~~~l~~-~~~~~~~~~~~wSPDg-----------------~~~~~~l~f~~ 317 (789)
..|.+||+.++. ...... ......+..+.|+|++ +. |+..+
T Consensus 127 ----------------~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~sgs 186 (316)
T 3bg1_A 127 ----------------GAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKR----FASGG 186 (316)
T ss_dssp ----------------SCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCB----EECCB
T ss_pred ----------------CCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccce----EEEec
Confidence 467888887653 211110 1223356788999984 33 33322
Q ss_pred ecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC---CeeecCCCCCccCcceecCCC----CEEEEEe
Q 003886 318 WSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL---PVVNLTESISSAFFPRFSPDG----KFLVFLS 390 (789)
Q Consensus 318 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~Lt~~~~~~~~p~~SpDG----~~la~~s 390 (789)
.+..|.++|+. ..+ ....+..+...+...+||||| +.|+..+
T Consensus 187 ---------------~D~~v~lWd~~----------------~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s 235 (316)
T 3bg1_A 187 ---------------CDNLIKLWKEE----------------EDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS 235 (316)
T ss_dssp ---------------TTSBCCEEEEC----------------TTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE
T ss_pred ---------------CCCeEEEEEeC----------------CCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc
Confidence 22345566651 121 234566667778899999997 6777666
Q ss_pred cCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEE
Q 003886 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (789)
Q Consensus 391 ~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (789)
.+. .|.+||+.+........ .+.. . +...+..+.|+|||+.| +++..++...|
T Consensus 236 ~D~-----------~v~iw~~~~~~~~~~~~---~~~~--------~----~~~~v~~v~~sp~g~~l-as~~~D~~v~l 288 (316)
T 3bg1_A 236 QDG-----------RVFIWTCDDASSNTWSP---KLLH--------K----FNDVVWHVSWSITANIL-AVSGGDNKVTL 288 (316)
T ss_dssp TTC-----------EEEEEECSSTTCCCCBC---CEEE--------E----CSSCEEEEEECTTTCCE-EEEESSSCEEE
T ss_pred CCC-----------eEEEEEccCccccchhh---hhhh--------c----CCCcEEEEEEcCCCCEE-EEEcCCCeEEE
Confidence 543 58889886532110000 0000 0 01134567899999855 56667778888
Q ss_pred EEEECCCCcEEEe
Q 003886 471 ISVNVSSGELLRI 483 (789)
Q Consensus 471 ~~~dl~tg~~~~l 483 (789)
|..+. .|+..++
T Consensus 289 w~~~~-~g~~~~~ 300 (316)
T 3bg1_A 289 WKESV-DGQWVCI 300 (316)
T ss_dssp EEECT-TSCEEEE
T ss_pred EEECC-CCcEEEe
Confidence 87765 3554443
|
| >3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic residues, glycoprotein, hydrolase, lipid degradation, zymogen, disulf; HET: NAG BTB; 1.49A {Candida antarctica} PDB: 3icw_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=5.1e-09 Score=108.09 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=83.6
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc-hhhH-HHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHH
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN 653 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~-~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~ 653 (789)
+...++.|.. .+....+.||++||...+ . ..|. .....|.++||.|+++|++| +|.... ....+
T Consensus 50 L~~~i~~p~~-~~~~~~~pVVLvHG~~~~--~~~~w~~~l~~~L~~~Gy~V~a~DlpG---~G~~~~--------~~~~~ 115 (316)
T 3icv_A 50 LDAGLTCQGA-SPSSVSKPILLVPGTGTT--GPQSFDSNWIPLSAQLGYTPCWISPPP---FMLNDT--------QVNTE 115 (316)
T ss_dssp HHHTEEETTB-BTTBCSSEEEEECCTTCC--HHHHHTTTHHHHHHHTTCEEEEECCTT---TTCSCH--------HHHHH
T ss_pred HhhhEeCCCC-CCCCCCCeEEEECCCCCC--cHHHHHHHHHHHHHHCCCeEEEecCCC---CCCCcH--------HHHHH
Confidence 4444555633 233455678899996553 3 4565 67789999999999999987 443211 12356
Q ss_pred HHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC---CCceeEEEEeCCccc
Q 003886 654 DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLCN 707 (789)
Q Consensus 654 D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~---p~~~~a~v~~~pv~~ 707 (789)
++.+.++.+++. ...+++.|+||||||.++.+++..+ +++++.+|+.+|...
T Consensus 116 ~la~~I~~l~~~--~g~~~v~LVGHSmGGlvA~~al~~~p~~~~~V~~lV~lapp~~ 170 (316)
T 3icv_A 116 YMVNAITTLYAG--SGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDYK 170 (316)
T ss_dssp HHHHHHHHHHHH--TTSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCTT
T ss_pred HHHHHHHHHHHH--hCCCceEEEEECHHHHHHHHHHHhccccchhhceEEEECCCCC
Confidence 778888888776 3457899999999999998877764 589999999998653
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.91 E-value=9.9e-09 Score=115.74 Aligned_cols=268 Identities=9% Similarity=-0.033 Sum_probs=138.0
Q ss_pred cccEEEEeCCC------CCeEEEEecCCCCCCeEEEEec--CCcee--EEEecC------CCccccccCCCcccceeecC
Q 003886 154 TGASAVVPSPS------GSKLLVVRNPENESPIQFELWS--QSQLE--KEFHVP------QTVHGSVYADGWFEGISWNS 217 (789)
Q Consensus 154 ~~~~~~~~SPd------G~~la~~~~~~~~~~~~~~i~~--~~~~~--~~~~~~------~~~~g~v~~d~~~~~~~wSp 217 (789)
+.+...+|||+ |+.||..+..+ ...+|+ .+... ...... .+.. ..+.+++|+|
T Consensus 208 ~~V~~v~wsp~~~~~~~~~~LAs~s~Dg-----tvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~------~~v~sv~~s~ 276 (524)
T 2j04_B 208 GEVWDLKWHEGCHAPHLVGCLSFVSQEG-----TINFLEIIDNATDVHVFKMCEKPSLTLSLAD------SLITTFDFLS 276 (524)
T ss_dssp CSEEEEEECSSCCCSSSSCEEEEEETTS-----CEEEEECCCCSSSSSEEECCCSCSEEECCTT------TCEEEEEESS
T ss_pred CcEEEEEECCCCCCCCCCceEEEEecCC-----eEEEEEcCCCccccccceeecCceEEEEcCC------CCEEEEEecC
Confidence 45788999997 56888776543 344552 22111 000000 0111 2337899999
Q ss_pred CCCEEEEEeecCCCCCCCccCCCCCCC-CCCcCCCCCCCcc--eeeCCc-ccccCCccCceEEEEEccCCceEe-ccCCC
Q 003886 218 DETLIAYVAEEPSPSKPTFSLGSTKGG-SSDKDCNSWKGQG--DWEEDW-GETYAGKRQPSLFVININSGEVQA-VKGIP 292 (789)
Q Consensus 218 Dg~~la~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~d~-g~~~~~~~~~~l~v~d~~~g~~~~-l~~~~ 292 (789)
++ .||..+.+.... .|+....... .....+...+... .|.++. ....++..+..|.+||+.+++... +.+..
T Consensus 277 ~~-~lasgs~DgtV~--lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~ 353 (524)
T 2j04_B 277 PT-TVVCGFKNGFVA--EFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRF 353 (524)
T ss_dssp SS-EEEEEETTSEEE--EEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEEC
T ss_pred CC-eEEEEeCCCEEE--EEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccc
Confidence 75 687777665432 3332221111 1123344444444 356653 233456678899999998765322 21111
Q ss_pred CCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCC
Q 003886 293 KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESIS 372 (789)
Q Consensus 293 ~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~ 372 (789)
....+..++|+||++. ++..+. ...|.++|+. .......+..+..
T Consensus 354 ~~~~v~~v~fsp~~~~----l~s~~~---------------d~tv~lwd~~----------------~~~~~~~l~gH~~ 398 (524)
T 2j04_B 354 RGSNLVPVVYCPQIYS----YIYSDG---------------ASSLRAVPSR----------------AAFAVHPLVSRET 398 (524)
T ss_dssp SCCSCCCEEEETTTTE----EEEECS---------------SSEEEEEETT----------------CTTCCEEEEECSS
T ss_pred ccCcccceEeCCCcCe----EEEeCC---------------CCcEEEEECc----------------ccccceeeecCCC
Confidence 1123567999999987 665542 2257778872 2233456777778
Q ss_pred ccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccc
Q 003886 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 452 (789)
Q Consensus 373 ~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws 452 (789)
.+...+|||||+.|+..+.+. .+.+||...+-........ .... . ..+..+.|+
T Consensus 399 ~V~sva~Sp~g~~l~Sgs~Dg-----------tv~lwd~~~~~~~~~~~~~-~~~~--------~------~~v~~v~~s 452 (524)
T 2j04_B 399 TITAIGVSRLHPMVLAGSADG-----------SLIITNAARRLLHGIKNSS-ATQK--------S------LRLWKWDYS 452 (524)
T ss_dssp CEEEEECCSSCCBCEEEETTT-----------EEECCBSCSSTTTCC-------CC--------C------CEEEECBCC
T ss_pred ceEEEEeCCCCCeEEEEECCC-----------EEEEEechHhhccccccCc-ccee--------e------eEEEEeccC
Confidence 889999999999988766443 5888887543111000000 0000 0 001256789
Q ss_pred cCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCC
Q 003886 453 SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGD 500 (789)
Q Consensus 453 ~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~ 500 (789)
|||+.+-+ .+ ...++.++..+..+..+......+....|+|++.
T Consensus 453 p~g~~~~~---~~-~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~ 496 (524)
T 2j04_B 453 IKDDKYRI---DS-SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSA 496 (524)
T ss_dssp SSSCEEEE---CC-CCCCCC-------------CCCSCCCEEECCSTT
T ss_pred CCCCeEEc---cC-CceecccccCCcceeeecCCCceEEEEECCCCCC
Confidence 99984421 22 1223333222333344444444555668999874
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.90 E-value=1e-06 Score=97.63 Aligned_cols=290 Identities=11% Similarity=0.074 Sum_probs=161.0
Q ss_pred hcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCC
Q 003886 121 LANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQ 198 (789)
Q Consensus 121 ~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~ 198 (789)
..+...+.+.++++.. +.....+.... +.+...+|+|++ .|+..+..+ .+.+| ..++....+.
T Consensus 136 ~sgs~dg~i~vwd~~~-~~~~~~~~~h~-----~~V~~l~~~~~~-~l~s~s~dg-----~i~vwd~~~~~~~~~~~--- 200 (464)
T 3v7d_B 136 ITGADDKMIRVYDSIN-KKFLLQLSGHD-----GGVWALKYAHGG-ILVSGSTDR-----TVRVWDIKKGCCTHVFE--- 200 (464)
T ss_dssp EEEETTSCEEEEETTT-TEEEEEECCCS-----SCEEEEEECSTT-EEEEEETTS-----CEEEEETTTTEEEEEEC---
T ss_pred EEEcCCCcEEEEECCC-CcEEEEEeCCC-----cCEEEEEEcCCC-EEEEEeCCC-----CEEEEECCCCcEEEEEC---
Confidence 3344556677777532 22222333232 568899999999 666555443 35666 3444333332
Q ss_pred CccccccCCCcccceeec--CCCCEEEEEeecCCCCCCCccCCCCCCCCCC-----------------------cCCCCC
Q 003886 199 TVHGSVYADGWFEGISWN--SDETLIAYVAEEPSPSKPTFSLGSTKGGSSD-----------------------KDCNSW 253 (789)
Q Consensus 199 ~~~g~v~~d~~~~~~~wS--pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~ 253 (789)
...+.| ..+.|+ |+++.|+..+.+.... .|+.......... ..+...
T Consensus 201 ~h~~~v------~~l~~~~~~~~~~l~s~s~d~~i~--vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (464)
T 3v7d_B 201 GHNSTV------RCLDIVEYKNIKYIVTGSRDNTLH--VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272 (464)
T ss_dssp CCSSCE------EEEEEEESSSCEEEEEEETTSCEE--EEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSC
T ss_pred CCCCcc------EEEEEecCCCCCEEEEEcCCCcEE--EeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccce
Confidence 122222 677777 6888888877665432 2322111111000 000000
Q ss_pred CCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccC
Q 003886 254 KGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 333 (789)
Q Consensus 254 ~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~ 333 (789)
...+.++....+++..+..|.+||+.+++..... ......+..+.|+|||+. |+..+ .
T Consensus 273 --v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~----l~sg~---------------~ 330 (464)
T 3v7d_B 273 --VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL-SGHTDRIYSTIYDHERKR----CISAS---------------M 330 (464)
T ss_dssp --EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEETTTTE----EEEEE---------------T
T ss_pred --EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe-cCCCCCEEEEEEcCCCCE----EEEEe---------------C
Confidence 0112333333445556788999999988765441 233446788999999997 66555 2
Q ss_pred CcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 334 PCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 334 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
+..|+++|+. .+.....+..+...+....|+ ++.|+..+.+. .|.+||+.+
T Consensus 331 dg~i~vwd~~----------------~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg-----------~v~vwd~~~ 381 (464)
T 3v7d_B 331 DTTIRIWDLE----------------NGELMYTLQGHTALVGLLRLS--DKFLVSAAADG-----------SIRGWDAND 381 (464)
T ss_dssp TSCEEEEETT----------------TTEEEEEECCCSSCEEEEEEC--SSEEEEEETTS-----------EEEEEETTT
T ss_pred CCcEEEEECC----------------CCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCC-----------cEEEEECCC
Confidence 3368888872 233445666666667777776 57777666443 599999876
Q ss_pred CCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe-cCCCCCcee
Q 003886 414 NGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI-TPAESNFSW 492 (789)
Q Consensus 414 ~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~l-t~~~~~~~~ 492 (789)
+..... .. . ........|+++++.|+ ++. ++ .+..+|+.+|+..+. ...+. ...
T Consensus 382 ~~~~~~---------~~-~----------~~~~~~~~~~~~~~~l~-~~~-dg--~i~iwd~~~g~~~~~~~~~~~-~~v 436 (464)
T 3v7d_B 382 YSRKFS---------YH-H----------TNLSAITTFYVSDNILV-SGS-EN--QFNIYNLRSGKLVHANILKDA-DQI 436 (464)
T ss_dssp CCEEEE---------EE-C----------TTCCCEEEEEECSSEEE-EEE-TT--EEEEEETTTCCEEESCTTTTC-SEE
T ss_pred Cceeee---------ec-C----------CCCccEEEEEeCCCEEE-Eec-CC--eEEEEECCCCcEEehhhccCC-CcE
Confidence 442110 00 0 01123457899998554 443 44 466668889988764 22222 233
Q ss_pred EEeeecCCEEEEEEeCC
Q 003886 493 SLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 493 ~~~s~dg~~l~~~~ss~ 509 (789)
..++.+++.+++..++.
T Consensus 437 ~~v~~~~~~l~~~~~~~ 453 (464)
T 3v7d_B 437 WSVNFKGKTLVAAVEKD 453 (464)
T ss_dssp EEEEEETTEEEEEEEET
T ss_pred EEEEecCCEEEEEEEeC
Confidence 45555677777766554
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.5e-08 Score=104.43 Aligned_cols=269 Identities=10% Similarity=-0.006 Sum_probs=138.3
Q ss_pred cCCCC---CceEEEEEeechhhcccceeEEEEEEeecCCCCc-cceeecCCcceecccEEEEeCCCCCeEEEEecCCCCC
Q 003886 103 SGNGN---GTQAMFSISQPNLLANKRKKFMLSTVISKENENS-VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENES 178 (789)
Q Consensus 103 ~~spd---g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~ 178 (789)
.++|| |+.++... ..+.+.++++...+... ..+.... ..+...+|||||++|+.....+
T Consensus 46 ~~~~~~~~g~~l~~~~---------~dg~i~iw~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~l~s~~~dg--- 108 (368)
T 3mmy_A 46 SFSPPTLPGNFLIAGS---------WANDVRCWEVQDSGQTIPKAQQMHT-----GPVLDVCWSDDGSKVFTASCDK--- 108 (368)
T ss_dssp EECCTTSSSEEEEEEE---------TTSEEEEEEECTTSCEEEEEEEECS-----SCEEEEEECTTSSEEEEEETTS---
T ss_pred EEcCCCCCceEEEEEC---------CCCcEEEEEcCCCCceeEEEecccc-----CCEEEEEECcCCCEEEEEcCCC---
Confidence 34577 57665432 23456666664423322 2333333 4588999999999999876554
Q ss_pred CeEEEEe--cCCceeEEEecCCCccccccCCCcccceee--cCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCC
Q 003886 179 PIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISW--NSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK 254 (789)
Q Consensus 179 ~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~w--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (789)
.+.+| ..++..+.......+ ..+.| +||++.|+..+.+.... .|+..............
T Consensus 109 --~v~iwd~~~~~~~~~~~~~~~v----------~~~~~~~~~~~~~l~~~~~dg~i~--vwd~~~~~~~~~~~~~~--- 171 (368)
T 3mmy_A 109 --TAKMWDLSSNQAIQIAQHDAPV----------KTIHWIKAPNYSCVMTGSWDKTLK--FWDTRSSNPMMVLQLPE--- 171 (368)
T ss_dssp --EEEEEETTTTEEEEEEECSSCE----------EEEEEEECSSCEEEEEEETTSEEE--EECSSCSSCSEEEECSS---
T ss_pred --cEEEEEcCCCCceeeccccCce----------EEEEEEeCCCCCEEEEccCCCcEE--EEECCCCcEEEEEecCC---
Confidence 56667 344444433322233 78999 99999888877655322 23322111111111000
Q ss_pred CcceeeCCcccccCCccCceEEEEEccCCceEecc-CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccC
Q 003886 255 GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNR 333 (789)
Q Consensus 255 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~ 333 (789)
............+.......+.+|++..+...... ............+.+++..... .++++. .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--------------~ 236 (368)
T 3mmy_A 172 RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPT-GFALGS--------------I 236 (368)
T ss_dssp CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEE-EEEEEE--------------T
T ss_pred CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCC-eEEEec--------------C
Confidence 00011111112233344567888888765432211 1122233445556665543111 133331 2
Q ss_pred CcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCC------------CccCcceecCCCCEEEEEecCCCCCCCCcc
Q 003886 334 PCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESI------------SSAFFPRFSPDGKFLVFLSAKSSVDSGAHS 401 (789)
Q Consensus 334 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~------------~~~~~p~~SpDG~~la~~s~~~~~~~g~~~ 401 (789)
...|.++++..... ......+..+. ..+...+|||||++|+..+.+.
T Consensus 237 dg~i~i~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg-------- 295 (368)
T 3mmy_A 237 EGRVAIHYINPPNP-------------AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDG-------- 295 (368)
T ss_dssp TSEEEEEESSCSCH-------------HHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTS--------
T ss_pred CCcEEEEecCCCCc-------------cccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCC--------
Confidence 23566666621000 01122222222 1477889999999988777543
Q ss_pred ccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEE
Q 003886 402 ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSI 463 (789)
Q Consensus 402 ~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~ 463 (789)
.|++||+.++........ ....+..+.|+|||+.|+..+.
T Consensus 296 ---~i~iwd~~~~~~~~~~~~-------------------~~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 296 ---RFSFWDKDARTKLKTSEQ-------------------LDQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp ---CEEEEETTTTEEEEECCC-------------------CSSCEEEEEECTTSSCEEEEEC
T ss_pred ---eEEEEECCCCcEEEEecC-------------------CCCCceEEEECCCCCeEEEEec
Confidence 599999887543211110 0113456789999997766554
|
| >1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa} SCOP: c.69.1.18 | Back alignment and structure |
|---|
Probab=98.90 E-value=3.5e-09 Score=109.63 Aligned_cols=102 Identities=17% Similarity=0.231 Sum_probs=79.0
Q ss_pred CCCcEEEEEcCCCCCCC---chhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcC
Q 003886 590 SCDPLIVVLHGGPHSVS---LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 666 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~---~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 666 (789)
+..|.||++||.++... ...|....+.|+++||.|+++|++| +|.+. ...+++.+.++.+++.
T Consensus 5 ~~~~~vvlvHG~~~~~~~~~~~~~~~~~~~L~~~G~~v~~~d~~g---~g~s~----------~~~~~~~~~i~~~~~~- 70 (285)
T 1ex9_A 5 QTKYPIVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQ---LDTSE----------VRGEQLLQQVEEIVAL- 70 (285)
T ss_dssp CCSSCEEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCS---SSCHH----------HHHHHHHHHHHHHHHH-
T ss_pred CCCCeEEEeCCCCCCccccccccHHHHHHHHHhCCCEEEEEeCCC---CCCch----------hhHHHHHHHHHHHHHH-
Confidence 34678999999776532 3366677889999999999999987 44432 2345666666666655
Q ss_pred CCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 667 LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
++.++|.|+|||+||.++..++.++|++++++|+.++..
T Consensus 71 -~~~~~v~lvGhS~GG~~a~~~a~~~p~~v~~lv~i~~p~ 109 (285)
T 1ex9_A 71 -SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAPH 109 (285)
T ss_dssp -HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred -hCCCCEEEEEECHhHHHHHHHHHhChhheeEEEEECCCC
Confidence 345789999999999999999999999999999998853
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.3e-08 Score=108.20 Aligned_cols=205 Identities=8% Similarity=0.034 Sum_probs=128.4
Q ss_pred ccceeecC-CCCEEEEEeecCCCCCCCccCCCCCC--CCCCcCCCCCCCcceeeCC-cccccCCccCceEEEEEccCCce
Q 003886 210 FEGISWNS-DETLIAYVAEEPSPSKPTFSLGSTKG--GSSDKDCNSWKGQGDWEED-WGETYAGKRQPSLFVININSGEV 285 (789)
Q Consensus 210 ~~~~~wSp-Dg~~la~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d-~g~~~~~~~~~~l~v~d~~~g~~ 285 (789)
+.+++|+| +++.||..+.+.... .|+...... ......+...+....|.|. ....+++..+..|.+||+.++..
T Consensus 122 V~~l~~~P~~~~~lasGs~dg~i~--lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~ 199 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSKGGDIM--LWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNIL 199 (435)
T ss_dssp EEEEEECSSCTTCEEEEETTSCEE--EECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEE
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEE--EEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCce
Confidence 37899999 566788777665433 344322221 1223345566667788874 33455666778899999998876
Q ss_pred EeccCC-CCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe
Q 003886 286 QAVKGI-PKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV 364 (789)
Q Consensus 286 ~~l~~~-~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 364 (789)
+.+... .....+..+.|+|||+. |+..+ ....|+++|+ .+...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~----l~~g~---------------~dg~i~~wd~-----------------~~~~~ 243 (435)
T 4e54_B 200 RVFASSDTINIWFCSLDVSASSRM----VVTGD---------------NVGNVILLNM-----------------DGKEL 243 (435)
T ss_dssp EEEECCSSCSCCCCCEEEETTTTE----EEEEC---------------SSSBEEEEES-----------------SSCBC
T ss_pred eEEeccCCCCccEEEEEECCCCCE----EEEEe---------------CCCcEeeecc-----------------Cccee
Confidence 655311 12335668899999986 66554 2336888898 55666
Q ss_pred eecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCcccccc
Q 003886 365 VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSS 444 (789)
Q Consensus 365 ~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~ 444 (789)
..+..+...+...+|+|+|+.++.....+ ..|.+||+.+........... . ...
T Consensus 244 ~~~~~h~~~v~~v~~~p~~~~~~~s~s~d----------~~v~iwd~~~~~~~~~~~~~~--------~--------h~~ 297 (435)
T 4e54_B 244 WNLRMHKKKVTHVALNPCCDWFLATASVD----------QTVKIWDLRQVRGKASFLYSL--------P--------HRH 297 (435)
T ss_dssp CCSBCCSSCEEEEEECTTCSSEEEEEETT----------SBCCEEETTTCCSSSCCSBCC--------B--------CSS
T ss_pred EEEecccceEEeeeecCCCceEEEEecCc----------ceeeEEecccccccceEEEee--------e--------ccc
Confidence 67777777888999999998765554332 248889987654321110000 0 011
Q ss_pred CCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEE
Q 003886 445 SILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELL 481 (789)
Q Consensus 445 ~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~ 481 (789)
.+..+.|+|||+.| +++..++...|| |+.+++..
T Consensus 298 ~v~~~~~spdg~~l-~s~~~D~~i~iw--d~~~~~~~ 331 (435)
T 4e54_B 298 PVNAACFSPDGARL-LTTDQKSEIRVY--SASQWDCP 331 (435)
T ss_dssp CEEECCBCTTSSEE-EEEESSSCEEEE--ESSSSSSE
T ss_pred cccceeECCCCCee-EEEcCCCEEEEE--ECCCCccc
Confidence 34467899999966 555556655555 66666543
|
| >2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation, hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum} SCOP: c.69.1.37 PDB: 2d80_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.3e-09 Score=111.76 Aligned_cols=110 Identities=15% Similarity=0.088 Sum_probs=71.7
Q ss_pred CCCCccEEEEEcCccHHHHHHHHHhCCCcee-EEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHH
Q 003886 667 LANPSKVTVVGGSHGGFLTTHLIGQAPDKFV-AAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR 745 (789)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~-a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 745 (789)
.+|++||+|+|+|+||++++.++..+|++|+ ++++.++...... .+... ...+.. .+...+..+....
T Consensus 7 ~iD~~RI~v~G~S~GG~mA~~~a~~~p~~fa~g~~v~ag~p~~~~----~~~~~---~~~~~~----~~~~~~~~~~~~~ 75 (318)
T 2d81_A 7 NVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCA----RNQYY---TSCMYN----GYPSITTPTANMK 75 (318)
T ss_dssp CEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTTTT----SSSCG---GGGSTT----CCCCCHHHHHHHH
T ss_pred CcCcceEEEEEECHHHHHHHHHHHHCchhhhccceEEeccccccc----chHHH---HHHhhc----cCCCCCCHHHHHH
Confidence 4899999999999999999999999999999 8877776431110 00000 000000 0000011122222
Q ss_pred HHhcCccccCCCCC-CCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 746 FHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 746 ~~~~sp~~~~~~i~-~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
..+.+++..+.+++ .|+||+||++|.+||++++.+++++|+.
T Consensus 76 ~~~~~~i~~~~~l~~~Pvli~HG~~D~vVP~~~s~~~~~~L~~ 118 (318)
T 2d81_A 76 SWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGN 118 (318)
T ss_dssp HHBTTTBCCGGGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTT
T ss_pred HhhcccCChhHcCCCCcEEEEeCCCCCCcCHHHHHHHHHHHHh
Confidence 22225666666654 5899999999999999999999998874
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-07 Score=112.60 Aligned_cols=246 Identities=11% Similarity=0.074 Sum_probs=143.9
Q ss_pred EEEecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCc-cceeecCCcceecccEEEEeCCC--CCeEEEEecCC
Q 003886 99 WTFNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS-VTFQWAPFPVEMTGASAVVPSPS--GSKLLVVRNPE 175 (789)
Q Consensus 99 ~~~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~lt~~~~~~~~~~~~~~~~SPd--G~~la~~~~~~ 175 (789)
...-.++|||+.++... ..+.+.++++....... ..+.... +.+...+|||+ |+.|+..+..+
T Consensus 12 V~~l~~s~dg~~latg~---------~dg~I~vwd~~~~~~~~~~~l~~h~-----~~V~~l~~s~~~~~~~l~s~s~Dg 77 (753)
T 3jro_A 12 IHDAVLDYYGKRLATCS---------SDKTIKIFEVEGETHKLIDTLTGHE-----GPVWRVDWAHPKFGTILASCSYDG 77 (753)
T ss_dssp EEEECCCSSSCCEEEEE---------TTTEEEEEEEETTEEEEEEEECCCS-----SCEEEEEECCTTSCSEEEEEETTS
T ss_pred eEEEEECCCCCeEEEEE---------CCCcEEEEecCCCCCccceeccCCc-----CceEEEEecCCCCCCEEEEEeCCC
Confidence 33445689999876542 23355566653222111 2222222 45889999999 99998877653
Q ss_pred CCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCC--CCEEEEEeecCCCCCCCccCCCCCCCCCCcCCC
Q 003886 176 NESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSD--ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCN 251 (789)
Q Consensus 176 ~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpD--g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (789)
.+.+| ..++...+.... ...+.| ..+.|+|+ |+.|+..+.+
T Consensus 78 -----~I~vwd~~~~~~~~~~~~~-~h~~~V------~~v~~sp~~~~~~l~sgs~d----------------------- 122 (753)
T 3jro_A 78 -----KVLIWKEENGRWSQIAVHA-VHSASV------NSVQWAPHEYGPLLLVASSD----------------------- 122 (753)
T ss_dssp -----CEEEEEEETTEEEEEEEEC-CCSSCE------EEEEECCGGGCSEEEEEETT-----------------------
T ss_pred -----eEEEEECCCCccccccccc-CCCCCe------EEEEECCCCCCCEEEEEeCC-----------------------
Confidence 34555 334322322221 222223 78999999 8888876432
Q ss_pred CCCCcceeeCCcccccCCccCceEEEEEccCCce---EeccCCCCCCccceEEEee-------------CCCCCccEEEE
Q 003886 252 SWKGQGDWEEDWGETYAGKRQPSLFVININSGEV---QAVKGIPKSLSVGQVVWAP-------------LNEGLHQYLVF 315 (789)
Q Consensus 252 ~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~---~~l~~~~~~~~~~~~~wSP-------------Dg~~~~~~l~f 315 (789)
..|.+||+.++.. ..+ ......+..+.|+| |++. |+.
T Consensus 123 ---------------------g~I~vwdl~~~~~~~~~~~--~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~----l~s 175 (753)
T 3jro_A 123 ---------------------GKVSVVEFKENGTTSPIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRK----FVT 175 (753)
T ss_dssp ---------------------SEEEEEECCSSSCCCCEEE--ECCSSCEEEEEECCCC---------CGGGCC----EEE
T ss_pred ---------------------CcEEEEEeecCCCcceeEe--ecCCCceEEEEecCcccccccccccCCCCCE----EEE
Confidence 5788999877632 222 22344677899999 5776 666
Q ss_pred EeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCC-CCeeecCCCCCccCcceecCC---CCEEEEEec
Q 003886 316 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESISSAFFPRFSPD---GKFLVFLSA 391 (789)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~Lt~~~~~~~~p~~SpD---G~~la~~s~ 391 (789)
.+. +..|+++|+.... .. .....+..+...+...+|+|| |+.|+..+.
T Consensus 176 gs~---------------dg~I~iwd~~~~~-------------~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~ 227 (753)
T 3jro_A 176 GGA---------------DNLVKIWKYNSDA-------------QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 227 (753)
T ss_dssp EET---------------TSCEEEEEEETTT-------------TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred EEC---------------CCeEEEEeccCCc-------------ccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence 652 2357777762100 00 123455666778899999999 888877665
Q ss_pred CCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 392 ~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
+. .|.+||+.++......... . . .. ....+..+.|+|||+.| +++..++...+|
T Consensus 228 Dg-----------~I~iwd~~~~~~~~~~~~~----~---~---~~----~~~~v~~l~~spdg~~l-~s~s~Dg~I~vw 281 (753)
T 3jro_A 228 DR-----------TCIIWTQDNEQGPWKKTLL----K---E---EK----FPDVLWRASWSLSGNVL-ALSGGDNKVTLW 281 (753)
T ss_dssp SS-----------CEEEEEESSSSSCCBCCBS----S---S---SC----CSSCCCCEEECTTTCCE-EEECSSSCEECC
T ss_pred CC-----------EEEEecCCCCCCcceeEEe----c---c---CC----CCCceEEEEEcCCCCEE-EEEcCCCEEEEE
Confidence 43 5889998775432110000 0 0 00 11245678999999855 555556665565
Q ss_pred EEE
Q 003886 472 SVN 474 (789)
Q Consensus 472 ~~d 474 (789)
.++
T Consensus 282 d~~ 284 (753)
T 3jro_A 282 KEN 284 (753)
T ss_dssp BCC
T ss_pred ecC
Confidence 444
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.4e-07 Score=113.86 Aligned_cols=214 Identities=9% Similarity=0.110 Sum_probs=125.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
..+...+|||||+.||.....+ .+.+|+........... ..+.| ..++|+| |++|+..+.+
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg-----~I~lw~~~~~~~~~~~~--~~~~V------~~l~fsp-g~~L~S~s~D----- 78 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTG-----EVHIYGQQQVEVVIKLE--DRSAI------KEMRFVK-GIYLVVINAK----- 78 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTS-----EEEEECSTTCEEEEECS--SCCCE------EEEEEET-TTEEEEEETT-----
T ss_pred CCcEEEEECCCCCEEEEEeCCC-----EEEEEeCCCcEEEEEcC--CCCCE------EEEEEcC-CCEEEEEECc-----
Confidence 4588999999999999877654 56777433223222222 12233 7999999 8877765432
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (789)
..|.+||+.+++.... ......+..++|+|||+. |
T Consensus 79 ---------------------------------------~~v~lWd~~~~~~~~~--~~~~~~V~~v~~sp~g~~----l 113 (902)
T 2oaj_A 79 ---------------------------------------DTVYVLSLYSQKVLTT--VFVPGKITSIDTDASLDW----M 113 (902)
T ss_dssp ---------------------------------------CEEEEEETTTCSEEEE--EECSSCEEEEECCTTCSE----E
T ss_pred ---------------------------------------CeEEEEECCCCcEEEE--EcCCCCEEEEEECCCCCE----E
Confidence 5799999998875433 223346788999999997 6
Q ss_pred EEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe------------eecCCCCCccCcceecC
Q 003886 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV------------VNLTESISSAFFPRFSP 381 (789)
Q Consensus 314 ~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~------------~~Lt~~~~~~~~p~~Sp 381 (789)
+..+ .+..|.++|+ .++.. ..+..+.+.+...+|+|
T Consensus 114 ~sgs---------------~dg~V~lwd~-----------------~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 114 LIGL---------------QNGSMIVYDI-----------------DRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp EEEE---------------TTSCEEEEET-----------------TTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred EEEc---------------CCCcEEEEEC-----------------CCCccccceeccccccccccccCCCCeEEEEEcc
Confidence 6554 2236788887 33322 12344556788999999
Q ss_pred CC-CEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCC---CccccccCCCCCccccCCCE
Q 003886 382 DG-KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDC---FPGLYSSSILSNPWLSDGCT 457 (789)
Q Consensus 382 DG-~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~---f~g~~~~~~~~~~ws~Dg~~ 457 (789)
++ ..|+..+ .+ ..+ +||+.++......... ..+ ..+.... ........+..+.|+|||+.
T Consensus 162 ~~~~~l~~g~-~d----------g~v-lWd~~~~~~~~~~~~~--~~~--g~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 225 (902)
T 2oaj_A 162 RDIGTVLISY-EY----------VTL-TYSLVENEIKQSFIYE--LPP--FAPGGDFSEKTNEKRTPKVIQSLYHPNSLH 225 (902)
T ss_dssp TEEEEEEEEC-SS----------CEE-EEETTTTEEEEEECCC--BCT--TCCCSTTCCCTTSCBCCCEEEEEECTTSSE
T ss_pred CCCCEEEEEe-CC----------CcE-EEECCCCceEEEEecc--cCC--cCCCcccccccccccCCCeEEEEEcCCCCE
Confidence 75 4554433 22 257 9998775432100000 000 0000000 00000113457789999985
Q ss_pred EEEEEEeCCeEEEEEEECCCCcEEE
Q 003886 458 MLLSSIWGSSQVIISVNVSSGELLR 482 (789)
Q Consensus 458 l~~~~~~~~~~~l~~~dl~tg~~~~ 482 (789)
| +++..++...| +|+.+|+...
T Consensus 226 l-asgs~Dg~i~l--Wd~~~g~~~~ 247 (902)
T 2oaj_A 226 I-ITIHEDNSLVF--WDANSGHMIM 247 (902)
T ss_dssp E-EEEETTCCEEE--EETTTCCEEE
T ss_pred E-EEEECCCeEEE--EECCCCcEEE
Confidence 5 55555665555 4777887654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.7e-07 Score=101.58 Aligned_cols=224 Identities=13% Similarity=0.082 Sum_probs=126.7
Q ss_pred cccEEEEeCC-CCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecC----------CCccccccCCCcccceeecC-CC
Q 003886 154 TGASAVVPSP-SGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVP----------QTVHGSVYADGWFEGISWNS-DE 219 (789)
Q Consensus 154 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~----------~~~~g~v~~d~~~~~~~wSp-Dg 219 (789)
+.+...+||| +|++|+.....+ .+.+| ..++........ ....+. ...+.|+| ++
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------v~~~~~~~~~~ 112 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDG-----VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS------VETVQWYPHDT 112 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTS-----CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC------EEEEEECTTCT
T ss_pred CcEEEEEEecCCCCEEEEEcCCC-----eEEEEECCCCcccceEeccccccccccccccCCCc------EEEEEEccCCC
Confidence 4588999999 999999876543 34555 222222111100 112222 37899999 66
Q ss_pred CEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccce
Q 003886 220 TLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQ 299 (789)
Q Consensus 220 ~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~ 299 (789)
+.|+..+. +..|.+||+.+++.... ......+..
T Consensus 113 ~~l~s~~~--------------------------------------------d~~i~iwd~~~~~~~~~--~~~~~~~~~ 146 (408)
T 4a11_B 113 GMFTSSSF--------------------------------------------DKTLKVWDTNTLQTADV--FNFEETVYS 146 (408)
T ss_dssp TCEEEEET--------------------------------------------TSEEEEEETTTTEEEEE--EECSSCEEE
T ss_pred cEEEEEeC--------------------------------------------CCeEEEeeCCCCcccee--ccCCCceee
Confidence 66665432 25799999999887665 334445678
Q ss_pred EEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCccee
Q 003886 300 VVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRF 379 (789)
Q Consensus 300 ~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~ 379 (789)
+.|+|++.. ...++..+ ....|+++|+. .......+..+...+...+|
T Consensus 147 ~~~~~~~~~-~~~~~~~~---------------~~~~v~~~d~~----------------~~~~~~~~~~~~~~v~~~~~ 194 (408)
T 4a11_B 147 HHMSPVSTK-HCLVAVGT---------------RGPKVQLCDLK----------------SGSCSHILQGHRQEILAVSW 194 (408)
T ss_dssp EEECSSCSS-CCEEEEEE---------------SSSSEEEEESS----------------SSCCCEEECCCCSCEEEEEE
T ss_pred eEeecCCCC-CcEEEEEc---------------CCCeEEEEeCC----------------CcceeeeecCCCCcEEEEEE
Confidence 889886541 00144443 23468888882 33345667667777889999
Q ss_pred cCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEE
Q 003886 380 SPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTML 459 (789)
Q Consensus 380 SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~ 459 (789)
+|+|+++++....+ ..|.+||+.++................ . ....+.+ ....+..+.|+|||+.|+
T Consensus 195 ~~~~~~ll~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~-~~~~v~~~~~~~~~~~l~ 261 (408)
T 4a11_B 195 SPRYDYILATASAD----------SRVKLWDVRRASGCLITLDQHNGKKSQ-A-VESANTA-HNGKVNGLCFTSDGLHLL 261 (408)
T ss_dssp CSSCTTEEEEEETT----------SCEEEEETTCSSCCSEECCTTTTCSCC-C-TTTSSCS-CSSCEEEEEECTTSSEEE
T ss_pred CCCCCcEEEEEcCC----------CcEEEEECCCCCcccccccccccccce-e-ecccccc-ccCceeEEEEcCCCCEEE
Confidence 99999754444332 258999987654211100000000000 0 0000000 112345678999999665
Q ss_pred EEEEeCCeEEEEEEECCCCcEEE
Q 003886 460 LSSIWGSSQVIISVNVSSGELLR 482 (789)
Q Consensus 460 ~~~~~~~~~~l~~~dl~tg~~~~ 482 (789)
++..++. |..+|+.+++...
T Consensus 262 -~~~~dg~--i~vwd~~~~~~~~ 281 (408)
T 4a11_B 262 -TVGTDNR--MRLWNSSNGENTL 281 (408)
T ss_dssp -EEETTSC--EEEEETTTCCBCC
T ss_pred -EecCCCe--EEEEECCCCccce
Confidence 4444444 5556777776543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.8e-07 Score=95.01 Aligned_cols=201 Identities=11% Similarity=0.048 Sum_probs=115.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCC-ccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQT-VHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~-~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
..+....|||+ .||..+... .+.+|+ .+.......+... ..+.| ..++|||||+.||..+.+
T Consensus 15 ~~v~~~~~s~~--~las~~~D~-----~i~lw~~~~~~~~~~~~~~~~~h~~~v------~~v~~sp~~~~las~s~D-- 79 (330)
T 2hes_X 15 EKIWSFDFSQG--ILATGSTDR-----KIKLVSVKYDDFTLIDVLDETAHKKAI------RSVAWRPHTSLLAAGSFD-- 79 (330)
T ss_dssp SCEEEEEEETT--EEEEEESSS-----CEEEEECSSSCCEEEEEECTTCCCSCE------EEEEECTTSSEEEEEETT--
T ss_pred CceeeeccCCC--EEEEEcCCC-----EEEEEEecCCCeEEEEEEecCCccCCE------EEEEECCCCCEEEEEeCC--
Confidence 35778899998 666655443 355662 2222222222122 22334 789999999998876544
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCC-------ce-EeccCCCCCCccceEEE
Q 003886 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSG-------EV-QAVKGIPKSLSVGQVVW 302 (789)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g-------~~-~~l~~~~~~~~~~~~~w 302 (789)
..|.+||+..+ +. ..+ ......+..++|
T Consensus 80 ------------------------------------------~~v~iw~~~~~~~~~~~~~~~~~~--~~h~~~V~~v~~ 115 (330)
T 2hes_X 80 ------------------------------------------STVSIWAKEESADRTFEMDLLAII--EGHENEVKGVAW 115 (330)
T ss_dssp ------------------------------------------SCEEEEEC-------CCCEEEEEE--C----CEEEEEE
T ss_pred ------------------------------------------CcEEEEEcccCcCccccceeEEEE--cCCCCcEEEEEE
Confidence 34666766432 11 223 122345778999
Q ss_pred eeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCC-CCeeecCCCCCccCcceecC
Q 003886 303 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-LPVVNLTESISSAFFPRFSP 381 (789)
Q Consensus 303 SPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~Lt~~~~~~~~p~~Sp 381 (789)
+|||+. |+..+. +..|.++|+... ... .....+..+...+...+|+|
T Consensus 116 sp~g~~----las~s~---------------D~~v~iwd~~~~-------------~~~~~~~~~~~~h~~~v~~v~~~p 163 (330)
T 2hes_X 116 SNDGYY----LATCSR---------------DKSVWIWETDES-------------GEEYECISVLQEHSQDVKHVIWHP 163 (330)
T ss_dssp CTTSCE----EEEEET---------------TSCEEEEECCTT-------------CCCCEEEEEECCCSSCEEEEEECS
T ss_pred CCCCCE----EEEEeC---------------CCEEEEEeccCC-------------CCCeEEEEEeccCCCceEEEEECC
Confidence 999997 776652 235777776200 001 12345666777788999999
Q ss_pred CCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccC--CCEEE
Q 003886 382 DGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD--GCTML 459 (789)
Q Consensus 382 DG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~D--g~~l~ 459 (789)
||+.|+..+.+. .|.+||..++... .+..... ....+..+.|+|+ +. ++
T Consensus 164 ~~~~l~s~s~D~-----------~i~iW~~~~~~~~--------~~~~~~~---------h~~~v~~~~~~~~~~~~-~l 214 (330)
T 2hes_X 164 SEALLASSSYDD-----------TVRIWKDYDDDWE--------CVAVLNG---------HEGTVWSSDFDKTEGVF-RL 214 (330)
T ss_dssp SSSEEEEEETTS-----------CEEEEEEETTEEE--------EEEEECC---------CSSCEEEEEECCSSSSC-EE
T ss_pred CCCEEEEEcCCC-----------eEEEEECCCCCee--------EEEEccC---------CCCcEEEEEecCCCCee-EE
Confidence 999988777553 4788886543211 0111100 0012345678888 44 45
Q ss_pred EEEEeCCeEEEEEEE
Q 003886 460 LSSIWGSSQVIISVN 474 (789)
Q Consensus 460 ~~~~~~~~~~l~~~d 474 (789)
+++..++...||.+.
T Consensus 215 ~s~s~D~~v~iw~~~ 229 (330)
T 2hes_X 215 CSGSDDSTVRVWKYM 229 (330)
T ss_dssp EEEETTSCEEEEEEE
T ss_pred EEEeCCCeEEEEEec
Confidence 677777888888765
|
| >4fol_A FGH, S-formylglutathione hydrolase; D-type esterase, oxidation sensor motif, esterase activity activation, esterase activity inhibition; 2.07A {Saccharomyces cerevisiae} PDB: 1pv1_A 3c6b_A* 4flm_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-08 Score=105.48 Aligned_cols=197 Identities=13% Similarity=0.149 Sum_probs=107.6
Q ss_pred CCeeEEEEEEecCCCC-----CCCCCcEEEEEcCCCCCCCchhhHH---HHHHHHHCCcEEEEEcCC--CC--CC-----
Q 003886 572 AQKPFEAIFVSSSHKK-----DCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYR--GS--LG----- 634 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~-----~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~Gy~V~~~d~r--Gs--~G----- 634 (789)
-|.++...+|+|+++. +++++|+|.++||.++. ...|.. ..+.+++.|.++++++-. +. ++
T Consensus 24 l~~~~~~~VyLPp~y~~~~~~~~~~~PVLYlLhG~~~~--~~~w~~~~~~~~~~~~~~~~~v~p~~~p~~~~~~~~~~~~ 101 (299)
T 4fol_A 24 TKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCT--PDNASEKAFWQFQADKYGFAIVFPDTSPRGDEVANDPEGS 101 (299)
T ss_dssp TSSEEEEEEEECGGGGCC------CBCEEEEECCTTCC--HHHHHHHSCHHHHHHHHTCEEEEECSSCCSTTSCCCTTCC
T ss_pred cCCceEEEEEcCCCCCccccccCCCcCEEEEECCCCCC--hHHHHHhchHhHHHHHcCchhhccCCCcceeecCCCcccc
Confidence 4567888899998764 35789999999997653 445543 234566789999999852 11 00
Q ss_pred ----CCchhhccCC-------CCCCcccHHHHHHHHHHHHH----cCCCCCccEEEEEcCccHHHHHHHHHhC--CCcee
Q 003886 635 ----FGEEALQSLP-------GKVGSQDVNDVLTAIDHVID----MGLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFV 697 (789)
Q Consensus 635 ----~G~~~~~~~~-------~~~~~~~~~D~~~~i~~l~~----~~~~d~~rv~l~G~S~GG~~a~~~~~~~--p~~~~ 697 (789)
.+..+..... .++...-.+|+...|+.-.. +...+.++.+|.|+||||+-|+.++.++ |++|.
T Consensus 102 ~~~g~~~~~y~d~~~~p~~~~~~~~~~l~~EL~~~i~~~f~~~~~r~~~~r~~~~i~G~SMGG~gAl~~al~~~~~~~~~ 181 (299)
T 4fol_A 102 WDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGISMGGYGAICGYLKGYSGKRYK 181 (299)
T ss_dssp SSSBTTBCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEBTHHHHHHHHHHHHTGGGTCCS
T ss_pred cccccCCccccccccCccccCccHHHHHHHHhHHHHHHhcccccccccccccceEEEecCchHHHHHHHHHhCCCCCceE
Confidence 0111100000 00111112344444432221 1123467899999999999999999985 67899
Q ss_pred EEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCcccc---CCCC-CCCEEEEEeCCCCCC
Q 003886 698 AAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISH---ISKV-KTPTIFLLGAQDLRV 773 (789)
Q Consensus 698 a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~---~~~i-~~P~Lii~G~~D~~v 773 (789)
++.+.+|.++.... .|..... ..+.+ .....+...++... ..+. ..+++|-+|++|...
T Consensus 182 ~~~s~s~~~~p~~~-------~~~~~~~------~~~~g----~~~~~~~~~d~~~l~~~~~~~~~~~i~id~G~~D~f~ 244 (299)
T 4fol_A 182 SCSAFAPIVNPSNV-------PWGQKAF------KGYLG----EEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFL 244 (299)
T ss_dssp EEEEESCCCCGGGS-------HHHHHHH------HHHTC---------CGGGCHHHHGGGSCCCTTCCEEEEEETTCTTH
T ss_pred EEEecccccCcccc-------ccccccc------ccccc----cchhhhhhcCHHHHHHhcccCCCCceEEEecCCCcch
Confidence 99999998875322 1111100 00111 11122333333332 2233 357999999999865
Q ss_pred ChH-HHHHHHHHCCC
Q 003886 774 PVS-NGLQVIYHIPF 787 (789)
Q Consensus 774 p~~-~~~~l~~~l~~ 787 (789)
..+ ....|.++++.
T Consensus 245 ~~~l~~~~f~~a~~~ 259 (299)
T 4fol_A 245 EEHLKPELLLEAVKA 259 (299)
T ss_dssp HHHTCTHHHHHHHTT
T ss_pred hhhcCHHHHHHHHHh
Confidence 322 12456666543
|
| >1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET: 2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D 1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A 2es4_A 1tah_B 1qge_D 1qge_E | Back alignment and structure |
|---|
Probab=98.85 E-value=5.6e-09 Score=109.54 Aligned_cols=105 Identities=19% Similarity=0.279 Sum_probs=80.2
Q ss_pred CCCcEEEEEcCCCCCCCc----hhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHc
Q 003886 590 SCDPLIVVLHGGPHSVSL----SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM 665 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~----~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 665 (789)
+..|.||++||..+.... ..|....+.|+++||.|+++|++| +|.+... ....+++.+.++.+++.
T Consensus 6 ~~~~~vVlvHG~~~~~~~~~~~~~w~~l~~~L~~~G~~V~~~d~~g---~g~s~~~-------~~~~~~l~~~i~~~l~~ 75 (320)
T 1ys1_X 6 ATRYPIILVHGLTGTDKYAGVLEYWYGIQEDLQQRGATVYVANLSG---FQSDDGP-------NGRGEQLLAYVKTVLAA 75 (320)
T ss_dssp CCSSCEEEECCTTCCSEETTTEESSTTHHHHHHHTTCCEEECCCCS---SCCSSST-------TSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCccccchHHHHHHHHHHHHhCCCEEEEEcCCC---CCCCCCC-------CCCHHHHHHHHHHHHHH
Confidence 456789999997765311 456677889999999999999987 4433210 22356666666666665
Q ss_pred CCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 666 GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 666 ~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
.+.+++.|+|||+||.++..++.++|++++++|+.++..
T Consensus 76 --~~~~~v~lvGHS~GG~va~~~a~~~p~~V~~lV~i~~p~ 114 (320)
T 1ys1_X 76 --TGATKVNLVGHSQGGLTSRYVAAVAPDLVASVTTIGTPH 114 (320)
T ss_dssp --HCCSCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCT
T ss_pred --hCCCCEEEEEECHhHHHHHHHHHhChhhceEEEEECCCC
Confidence 346789999999999999999999999999999998853
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.85 E-value=5.4e-08 Score=101.39 Aligned_cols=262 Identities=8% Similarity=-0.004 Sum_probs=139.5
Q ss_pred ceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccc
Q 003886 125 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSV 204 (789)
Q Consensus 125 ~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v 204 (789)
..+.+.++++... .....+.... ..+...+|||+|+.|+.....+ .-.+|.++.......+... ....+.+
T Consensus 37 ~dg~v~vw~~~~~-~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg--~i~~~~~~~~~~~~~~~~~-~~~~~~i 107 (313)
T 3odt_A 37 RDGTVRLWSKDDQ-WLGTVVYTGQ-----GFLNSVCYDSEKELLLFGGKDT--MINGVPLFATSGEDPLYTL-IGHQGNV 107 (313)
T ss_dssp TTSEEEEEEESSS-EEEEEEEECS-----SCEEEEEEETTTTEEEEEETTS--CEEEEETTCCTTSCC-CEE-CCCSSCE
T ss_pred cCCcEEEEECCCC-EEEEEeecCC-----ccEEEEEECCCCCEEEEecCCC--eEEEEEeeecCCCCcccch-hhcccCE
Confidence 4456777776322 1122222222 4588899999999999876643 2223333322111111111 1111222
Q ss_pred cCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeC-CcccccCCccCceEEEEEccCC
Q 003886 205 YADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE-DWGETYAGKRQPSLFVININSG 283 (789)
Q Consensus 205 ~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~g~~~~~~~~~~l~v~d~~~g 283 (789)
..+.| +++.|+..+.+.... .|+ ..........+........|.+ +....+++..+..|.+||.. .
T Consensus 108 ------~~~~~--~~~~l~~~~~d~~i~--~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~ 174 (313)
T 3odt_A 108 ------CSLSF--QDGVVISGSWDKTAK--VWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND-K 174 (313)
T ss_dssp ------EEEEE--ETTEEEEEETTSEEE--EEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-E
T ss_pred ------EEEEe--cCCEEEEEeCCCCEE--EEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC-c
Confidence 56777 677777766554321 222 0000111111222222334444 43444455567889999932 2
Q ss_pred ceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC
Q 003886 284 EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP 363 (789)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 363 (789)
....+. ......+..+.|+|+++ ++..+ ....|+++|+. ....
T Consensus 175 ~~~~~~-~~~~~~i~~~~~~~~~~-----~~~~~---------------~dg~i~i~d~~----------------~~~~ 217 (313)
T 3odt_A 175 VIKTFS-GIHNDVVRHLAVVDDGH-----FISCS---------------NDGLIKLVDMH----------------TGDV 217 (313)
T ss_dssp EEEEEC-SSCSSCEEEEEEEETTE-----EEEEE---------------TTSEEEEEETT----------------TCCE
T ss_pred eEEEEe-ccCcccEEEEEEcCCCe-----EEEcc---------------CCCeEEEEECC----------------chhh
Confidence 233332 22455678899999986 44444 23368888882 2334
Q ss_pred eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccc
Q 003886 364 VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 443 (789)
Q Consensus 364 ~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~ 443 (789)
...+..+...+...+|+|||+ |+..+.+ ..|++||+.++...... ... .
T Consensus 218 ~~~~~~~~~~i~~~~~~~~~~-l~~~~~d-----------g~v~iwd~~~~~~~~~~----------~~~---------~ 266 (313)
T 3odt_A 218 LRTYEGHESFVYCIKLLPNGD-IVSCGED-----------RTVRIWSKENGSLKQVI----------TLP---------A 266 (313)
T ss_dssp EEEEECCSSCEEEEEECTTSC-EEEEETT-----------SEEEEECTTTCCEEEEE----------ECS---------S
T ss_pred hhhhhcCCceEEEEEEecCCC-EEEEecC-----------CEEEEEECCCCceeEEE----------ecc---------C
Confidence 456666677788999999994 6655533 36999998775432111 000 0
Q ss_pred cCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE
Q 003886 444 SSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL 480 (789)
Q Consensus 444 ~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~ 480 (789)
..+..+.|+|||+ + +++..++...+| |+.+++.
T Consensus 267 ~~i~~~~~~~~~~-~-~~~~~dg~i~iw--~~~~~~~ 299 (313)
T 3odt_A 267 ISIWSVDCMSNGD-I-IVGSSDNLVRIF--SQEKSRW 299 (313)
T ss_dssp SCEEEEEECTTSC-E-EEEETTSCEEEE--ESCGGGC
T ss_pred ceEEEEEEccCCC-E-EEEeCCCcEEEE--eCCCCce
Confidence 1244678999998 4 345555655555 5555543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=7e-07 Score=93.13 Aligned_cols=243 Identities=14% Similarity=0.072 Sum_probs=146.5
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 157 SAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
...+|||++ .||...+. -..+| .+++..+.+.... ..+.| ..+.|+|||+.||..+.+
T Consensus 29 ~~l~WS~~~-~lAvg~D~------tV~iWd~~tg~~~~~~~~~~-~~~~V------~~v~~~~~~~~l~sgs~D------ 88 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVALDN------SVYLWSASSGDILQLLQMEQ-PGEYI------SSVAWIKEGNYLAVGTSS------ 88 (318)
T ss_dssp BCEEECTTS-EEEEEETT------EEEEEETTTCCEEEEEECCS-TTCCE------EEEEECTTSSEEEEEETT------
T ss_pred eEEEECCCC-EEEEEeCC------EEEEEECCCCCEEEEEEecC-CCCeE------EEEEECCCCCEEEEEECC------
Confidence 457899987 67765432 36677 4566666665422 11223 789999999999876443
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~ 314 (789)
..|.+||+.+++.... ...+ ......++++++. ++
T Consensus 89 --------------------------------------g~v~iw~~~~~~~~~~--~~~h-~~~~~~~~~~~~~----l~ 123 (318)
T 4ggc_A 89 --------------------------------------AEVQLWDVQQQKRLRN--MTSH-SARVGSLSWNSYI----LS 123 (318)
T ss_dssp --------------------------------------SEEEEEETTTTEEEEE--EECC-SSCEEEEEEETTE----EE
T ss_pred --------------------------------------CcEEEeecCCceeEEE--ecCc-cceEEEeecCCCE----EE
Confidence 5788999999876544 1221 2234467788775 55
Q ss_pred EEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCC
Q 003886 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 394 (789)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~ 394 (789)
..+. ...+...+... .......+..+........|+++|+.|+..+.+.
T Consensus 124 s~~~---------------~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~- 172 (318)
T 4ggc_A 124 SGSR---------------SGHIHHHDVRV---------------AEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDN- 172 (318)
T ss_dssp EEET---------------TSEEEEEETTS---------------SSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-
T ss_pred EEec---------------CCceEeeecCC---------------CceeEEEEcCccCceEEEEEcCCCCEEEEEecCc-
Confidence 4431 22344555410 2223445556666778889999999988766543
Q ss_pred CCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEE
Q 003886 395 VDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN 474 (789)
Q Consensus 395 ~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~d 474 (789)
.+.+||+.+++.......... . ....+....|++++..++..........+..+|
T Consensus 173 ----------~i~iwd~~~~~~~~~~~~~~~-----------~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd 227 (318)
T 4ggc_A 173 ----------LVNVWPSAPGEGGWVPLQTFT-----------Q----HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN 227 (318)
T ss_dssp ----------CEEEEESSCBTTBSCCSEEEC-----------C----CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEE
T ss_pred ----------ceeEEECCCCcccccceeeec-----------c----cCCceEEEEecCCCCcEEEEEecCCCCEEEEEe
Confidence 488999877554221111000 0 001233456788877777666655555566678
Q ss_pred CCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 475 VSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 475 l~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
..++................++++++.++....+.+ ..|++.+..+
T Consensus 228 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d--~~i~iwd~~~ 273 (318)
T 4ggc_A 228 VCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ--NQLVIWKYPT 273 (318)
T ss_dssp TTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTT--CCEEEEETTT
T ss_pred cccccccccccceeeeeeeeecccccceEEEEEcCC--CEEEEEECCC
Confidence 877777666555555566678888888776654322 2366666543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-06 Score=98.00 Aligned_cols=284 Identities=8% Similarity=-0.007 Sum_probs=153.8
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCc-cceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS-VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
++.|....+|+... ....+++++.. ..+. ..+..+ .....+++||||++|+..... + .+.
T Consensus 161 ~~~d~~~~~~V~~~-------~~~~V~viD~~--t~~v~~~i~~g------~~p~~v~~SpDGr~lyv~~~d--g--~V~ 221 (567)
T 1qks_A 161 NDWDLENLFSVTLR-------DAGQIALIDGS--TYEIKTVLDTG------YAVHISRLSASGRYLFVIGRD--G--KVN 221 (567)
T ss_dssp SCCCGGGEEEEEET-------TTTEEEEEETT--TCCEEEEEECS------SCEEEEEECTTSCEEEEEETT--S--EEE
T ss_pred cccCCCceEEEEeC-------CCCeEEEEECC--CCeEEEEEeCC------CCccceEECCCCCEEEEEcCC--C--eEE
Confidence 34565556666543 23477777652 2222 222222 134578999999998765432 2 466
Q ss_pred EEec---CCceeEEEecCCCccccccCCCcccceeec----CCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCC
Q 003886 183 ELWS---QSQLEKEFHVPQTVHGSVYADGWFEGISWN----SDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 255 (789)
Q Consensus 183 ~i~~---~~~~~~~~~~~~~~~g~v~~d~~~~~~~wS----pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (789)
.++. .++....+...... ..+.+| |||++++...+.
T Consensus 222 viD~~~~t~~~v~~i~~G~~P----------~~ia~s~~~~pDGk~l~v~n~~--------------------------- 264 (567)
T 1qks_A 222 MIDLWMKEPTTVAEIKIGSEA----------RSIETSKMEGWEDKYAIAGAYW--------------------------- 264 (567)
T ss_dssp EEETTSSSCCEEEEEECCSEE----------EEEEECCSTTCTTTEEEEEEEE---------------------------
T ss_pred EEECCCCCCcEeEEEecCCCC----------ceeEEccccCCCCCEEEEEEcc---------------------------
Confidence 6663 44444444433233 578999 799988776543
Q ss_pred cceeeCCcccccCCccCceEEEEEccCCceEeccCCCC----------CCccceEEEeeCCCCCccEEEEEeecCCceee
Q 003886 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK----------SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKL 325 (789)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~----------~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~ 325 (789)
.+.+.++|..+.++.....+.+ ...+..+..|+++.. +++.. .
T Consensus 265 ----------------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~----~vv~~-~------ 317 (567)
T 1qks_A 265 ----------------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE----FIVNV-K------ 317 (567)
T ss_dssp ----------------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE----EEEEE-T------
T ss_pred ----------------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCE----EEEEe-c------
Confidence 2678888988887654311111 113446677888765 44433 1
Q ss_pred eeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC---eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccc
Q 003886 326 GIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 402 (789)
Q Consensus 326 g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~ 402 (789)
....|+.+|. .... ...+.. ........|+|||++++...+.
T Consensus 318 -------~~g~v~~vd~-----------------~~~~~~~v~~i~~-~~~~~d~~~~pdgr~~~va~~~---------- 362 (567)
T 1qks_A 318 -------ETGKILLVDY-----------------TDLNNLKTTEISA-ERFLHDGGLDGSHRYFITAANA---------- 362 (567)
T ss_dssp -------TTTEEEEEET-----------------TCSSEEEEEEEEC-CSSEEEEEECTTSCEEEEEEGG----------
T ss_pred -------CCCeEEEEec-----------------CCCccceeeeeec-cccccCceECCCCCEEEEEeCC----------
Confidence 2237888887 2221 122211 1123345799999987666543
Q ss_pred cceeEEeecCCCCCCCcccceeeEEee-eeccCCCCCccccccCCCCCc-cccCCCEEEEEEEeCCeEEEEEEECCC---
Q 003886 403 TDSLHRIDWPTNGNFSSLEKIVDVIPV-VQCAEGDCFPGLYSSSILSNP-WLSDGCTMLLSSIWGSSQVIISVNVSS--- 477 (789)
Q Consensus 403 ~~~L~~~d~~~~~~~~~t~~~~~v~~~-~~~~~~~~f~g~~~~~~~~~~-ws~Dg~~l~~~~~~~~~~~l~~~dl~t--- 477 (789)
.+.|.++|..+++.. ..+++ -..+. || .... +.|++..++++... +...|..+|.++
T Consensus 363 sn~V~ViD~~t~kl~-------~~i~vgg~~Ph----pg------~g~~~~~p~~g~v~~t~~~-g~~~Vsvid~~~~~~ 424 (567)
T 1qks_A 363 RNKLVVIDTKEGKLV-------AIEDTGGQTPH----PG------RGANFVHPTFGPVWATSHM-GDDSVALIGTDPEGH 424 (567)
T ss_dssp GTEEEEEETTTTEEE-------EEEECSSSSBC----CT------TCEEEEETTTEEEEEEEBS-SSSEEEEEECCTTTC
T ss_pred CCeEEEEECCCCcEE-------EEEeccCcCCC----Cc------cceeeECCCCCcEEEeCCC-CCCeEEEecCCCCCC
Confidence 357999999875431 11222 11111 11 1222 47887777665443 334577778766
Q ss_pred ----CcE-EEecCCCCCceeEEeeecCCEEEEEEe-CCC--CCCeEEEEeeccc
Q 003886 478 ----GEL-LRITPAESNFSWSLLTLDGDNIIAVSS-SPV--DVPQVKYGYFVDK 523 (789)
Q Consensus 478 ----g~~-~~lt~~~~~~~~~~~s~dg~~l~~~~s-s~~--~p~~i~~~~~~~~ 523 (789)
-++ +.+............++++++++.... +++ .-..|.++|..+.
T Consensus 425 ~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 425 PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred ccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 233 444332221123467888888775442 222 0235788887644
|
| >3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase, cell adhesion, cell J glycoprotein, membrane, postsynaptic cell membrane; HET: NAG; 1.80A {Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A* 2vh8_A 3bl8_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.9e-09 Score=122.41 Aligned_cols=130 Identities=22% Similarity=0.240 Sum_probs=87.7
Q ss_pred cCCCeeEEEEEEecCCCC---CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHC-CcEEEEEcCCC-CCCCCchhhccCC
Q 003886 570 KGAQKPFEAIFVSSSHKK---DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV-GYSLLIVNYRG-SLGFGEEALQSLP 644 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~---~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~-Gy~V~~~d~rG-s~G~G~~~~~~~~ 644 (789)
+.|.+.+ .++.|.... ..++.|+||++|||+........ .....|+++ |++|+.+|||- .-||.......
T Consensus 108 sEdcL~l--~v~~P~~~~~~~~~~~~Pv~v~iHGGg~~~g~~~~-~~~~~la~~~~~vvv~~~YRl~~~Gfl~~~~~~-- 182 (574)
T 3bix_A 108 SEDCLYL--NIYVPTEDDIRDSGGPKPVMVYIHGGSYMEGTGNL-YDGSVLASYGNVIVITVNYRLGVLGFLSTGDQA-- 182 (574)
T ss_dssp CSCCCEE--EEEEEC--------CCEEEEEECCCSSSSSCCGGG-SCCHHHHHHHTCEEEEECCCCHHHHHCCCSSSS--
T ss_pred CCcCCEE--EEEECCCCCcCCCCCCCcEEEEECCCcccCCCCCc-cCchhhhccCCEEEEEeCCcCcccccCcCCCCC--
Confidence 3455555 477786431 24578999999998875443321 112456654 69999999993 22333221111
Q ss_pred CCCCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhCC---CceeEEEEeCCc
Q 003886 645 GKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPL 705 (789)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~p---~~~~a~v~~~pv 705 (789)
..+...+.|+.++++|+.++. ..|+++|+|+|+|.||.++..++.... .+|+++|+.+|.
T Consensus 183 -~~~n~gl~D~~~al~wv~~ni~~fggdp~~vti~G~SaGg~~~~~~~~~~~~~~glf~~aI~~Sg~ 248 (574)
T 3bix_A 183 -AKGNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQSGT 248 (574)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTCTTSCTTSCCEEEEESCC
T ss_pred -CCCcccHHHHHHHHHHHHHHHHHhCCCchhEEEEeecccHHHHHHHhhCCCcchhHHHHHHHhcCC
Confidence 123345899999999999862 369999999999999999998887543 579999998864
|
| >1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP: b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.3e-09 Score=117.92 Aligned_cols=113 Identities=9% Similarity=-0.009 Sum_probs=80.7
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHH-HHHHHHH-CCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcC
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSK-SLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMG 666 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~-~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~ 666 (789)
+...|+||++||++.+. ...|.. ....|.+ .||.|+++|+|| +|.+.......+. ..-.+|+.+.++++.++.
T Consensus 67 ~~~~p~vvliHG~~~~~-~~~w~~~l~~~l~~~~~~~Vi~~D~~G---~G~S~~~~~~~~~-~~~~~dl~~li~~L~~~~ 141 (452)
T 1bu8_A 67 QLDRKTRFIVHGFIDKG-EDGWLLDMCKKMFQVEKVNCICVDWRR---GSRTEYTQASYNT-RVVGAEIAFLVQVLSTEM 141 (452)
T ss_dssp CTTSEEEEEECCSCCTT-CTTHHHHHHHHHHTTCCEEEEEEECHH---HHSSCHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCC-CchHHHHHHHHHHhhCCCEEEEEechh---cccCchhHhHhhH-HHHHHHHHHHHHHHHHhc
Confidence 34578999999987753 245655 4466665 499999999997 3332211000000 112467778888887653
Q ss_pred CCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 667 LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
.++.+++.|+|||+||.++..++.++|++++++|+.+|..
T Consensus 142 g~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1bu8_A 142 GYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (452)
T ss_dssp CCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCCccceEEEEEChhHHHHHHHHHhcccccceEEEecCCc
Confidence 4677899999999999999999999999999999998753
|
| >3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP, serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.8e-08 Score=109.85 Aligned_cols=111 Identities=20% Similarity=0.224 Sum_probs=74.4
Q ss_pred CCCcEEEEEcCCCCCCCchhhH--HHHHHHH-HCCcEEEEEcCCCCCCCCchhhcc--C---CCCCC----cccHHHHHH
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYS--KSLAFLS-SVGYSLLIVNYRGSLGFGEEALQS--L---PGKVG----SQDVNDVLT 657 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~--~~~~~la-~~Gy~V~~~d~rGs~G~G~~~~~~--~---~~~~~----~~~~~D~~~ 657 (789)
...| ||++|||++.... .+. .....|+ ..|+.|+++|+|| ||++.... . ..+++ .+.++|+.+
T Consensus 37 ~g~P-i~l~~Ggeg~~~~-~~~~~g~~~~lA~~~~~~Vi~~DhRg---~G~S~p~~~~~~~~~~~l~~lt~~q~~~Dl~~ 111 (446)
T 3n2z_B 37 NGGS-ILFYTGNEGDIIW-FCNNTGFMWDVAEELKAMLVFAEHRY---YGESLPFGDNSFKDSRHLNFLTSEQALADFAE 111 (446)
T ss_dssp TTCE-EEEEECCSSCHHH-HHHHCHHHHHHHHHHTEEEEEECCTT---STTCCTTGGGGGSCTTTSTTCSHHHHHHHHHH
T ss_pred CCCC-EEEEeCCCCcchh-hhhcccHHHHHHHHhCCcEEEEecCC---CCCCCCCCccccccchhhccCCHHHHHHHHHH
Confidence 3456 5566898775321 111 2334454 4689999999998 66653211 0 12222 223678888
Q ss_pred HHHHHHHc-CCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 658 AIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 658 ~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
.++++..+ ......++.++||||||+++++++.++|+++.++|+.++.
T Consensus 112 ~~~~l~~~~~~~~~~p~il~GhS~GG~lA~~~~~~yP~~v~g~i~ssap 160 (446)
T 3n2z_B 112 LIKHLKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAP 160 (446)
T ss_dssp HHHHHHHHSTTGGGCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETCC
T ss_pred HHHHHHHhcccCCCCCEEEEEeCHHHHHHHHHHHhhhccccEEEEeccc
Confidence 88887764 1234468999999999999999999999999999987643
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.82 E-value=8.7e-08 Score=104.22 Aligned_cols=259 Identities=14% Similarity=0.061 Sum_probs=124.8
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeE--EEecCCCccccccCCCcccceeecC--------CCCEEEEE
Q 003886 158 AVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEK--EFHVPQTVHGSVYADGWFEGISWNS--------DETLIAYV 225 (789)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~--~~~~~~~~~g~v~~d~~~~~~~wSp--------Dg~~la~~ 225 (789)
...++|+++.||..+.+. ...+| ..++... ......++.+.| ..++|+| ||+.||..
T Consensus 94 ~~~~~~~~~~las~~~d~-----~v~lw~~~~~~~~~~~~~~~~~gH~~~v------~~v~~~p~~~~~~~~d~~~las~ 162 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDN-----TVRLIITKNETIITQHVLGGKSGHHNFV------NDIDIADVYSADNRLAEQVIASV 162 (393)
T ss_dssp ---CCEEEEEEEEEETTS-----CEEEEEEETTEEEEEEEECTTTSCSSCE------EEEEEEEEECTTCSEEEEEEEEE
T ss_pred eeecCCCCCEEEEEeCCC-----cEEEEECCCCccceeeeecccCCCCCce------EEEEEccccccccCCCCCEEEEE
Confidence 345777888888776543 35556 2333322 222234444555 8999998 89989887
Q ss_pred eecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCce-EeccCCCCCCccceEEEee
Q 003886 226 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEV-QAVKGIPKSLSVGQVVWAP 304 (789)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~-~~l~~~~~~~~~~~~~wSP 304 (789)
+.+ ..|.+||+.++.. ..+ ......+..++|+|
T Consensus 163 s~D--------------------------------------------~tv~~Wd~~~~~~~~~~--~~~~~~v~~v~~~p 196 (393)
T 4gq1_A 163 GDD--------------------------------------------CTLIIWRLTDEGPILAG--YPLSSPGISVQFRP 196 (393)
T ss_dssp ETT--------------------------------------------SEEEEEEEETTEEEEEE--EECSSCEEEEEEET
T ss_pred ECC--------------------------------------------CeEEEEECCCCceeeee--cCCCCCcEEEEECC
Confidence 654 5788999977653 333 23344667899999
Q ss_pred CCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCC---------CCCCeeecCCCCCccC
Q 003886 305 LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSS---------EDLPVVNLTESISSAF 375 (789)
Q Consensus 305 Dg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~---------~~~~~~~Lt~~~~~~~ 375 (789)
++.. ++.++.. +..|.++|+................. ..........+...+.
T Consensus 197 ~~~~----~l~~~~~--------------d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~ 258 (393)
T 4gq1_A 197 SNPN----QLIVGER--------------NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLA 258 (393)
T ss_dssp TEEE----EEEEEET--------------TSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCS
T ss_pred CCCc----eEEecCC--------------CCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccce
Confidence 9876 5555522 22566667632110000000000000 0000011122333456
Q ss_pred cceec-CCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccce-eeEEeeeeccCCCCCccccccCCCCCccc-
Q 003886 376 FPRFS-PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI-VDVIPVVQCAEGDCFPGLYSSSILSNPWL- 452 (789)
Q Consensus 376 ~p~~S-pDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~-~~v~~~~~~~~~~~f~g~~~~~~~~~~ws- 452 (789)
...|+ |||+.|+..+.+. .+.+||+.++......... ..+..+...+...... .. .......|.
T Consensus 259 ~v~~~~~dg~~l~s~s~d~-----------~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 325 (393)
T 4gq1_A 259 NVRWIGSDGSGILAMCKSG-----------AWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGIS-LF-PSLLGACPHP 325 (393)
T ss_dssp EEEEETTTTCEEEEECTTS-----------EEEEEEC-------------------CCSCSEEEEC-SS-CCSSCCEECS
T ss_pred eeeeecCCCCEEEEEeCCC-----------CEEEEECccCCCCceEeeecCccccEEEcccccccc-cc-CcceeEEEcc
Confidence 66776 8999988766443 5888888765432111110 0000000000000000 00 011223343
Q ss_pred cCCCEEEEEEEeCCeEEEEEEECCCCcEEEe-cCCCCCceeEEeeecCCEEEEEE
Q 003886 453 SDGCTMLLSSIWGSSQVIISVNVSSGELLRI-TPAESNFSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 453 ~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~l-t~~~~~~~~~~~s~dg~~l~~~~ 506 (789)
+.++.++.++..++... .+|..+++.... ......+....|+|||+.|+...
T Consensus 326 ~~~~~~~~sgs~Dg~V~--lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as 378 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQ--LINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIAT 378 (393)
T ss_dssp SCTTEEEEEETTTTEEE--EEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCEEEEEECCCCEEE--EEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence 34455555555555544 457777765443 33333455678999999887654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.6e-07 Score=100.51 Aligned_cols=268 Identities=9% Similarity=-0.007 Sum_probs=137.6
Q ss_pred CCC-CCceEEEEEeechhhcccceeEEEEEEeecC--CCCc-ccee-ecCCcceecccEEEEeCCCCCeEEEEecCCCCC
Q 003886 104 GNG-NGTQAMFSISQPNLLANKRKKFMLSTVISKE--NENS-VTFQ-WAPFPVEMTGASAVVPSPSGSKLLVVRNPENES 178 (789)
Q Consensus 104 ~sp-dg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~-~~lt-~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~ 178 (789)
++| ||+.++... ..+.+.++++... +... ..++ ... ..+...+|+|+|+.|+.....+ .
T Consensus 71 ~s~~~~~~l~s~s---------~dg~v~vwd~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~l~s~s~dg--~ 134 (437)
T 3gre_A 71 VSPGETPYLITGS---------DQGVIKIWNLKEIIVGEVYSSSLTYDCS-----STVTQITMIPNFDAFAVSSKDG--Q 134 (437)
T ss_dssp EECSSSCEEEEEE---------TTSEEEEEEHHHHHTTCCCSCSEEEECS-----SCEEEEEECTTSSEEEEEETTS--E
T ss_pred ECCCCCCEEEEec---------CCceEEEeECcccccCcccceeeeccCC-----CCEEEEEEeCCCCEEEEEeCCC--E
Confidence 347 887765432 3446667766431 1111 1222 122 4588999999999998876653 2
Q ss_pred CeEEEEe--cCCceeEEEecCCCcccccc----CCCccccee--ecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCC
Q 003886 179 PIQFELW--SQSQLEKEFHVPQTVHGSVY----ADGWFEGIS--WNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDC 250 (789)
Q Consensus 179 ~~~~~i~--~~~~~~~~~~~~~~~~g~v~----~d~~~~~~~--wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (789)
-.+|.+. ..++..+..... .++...+ .++....+. |+||++.|+..+.
T Consensus 135 i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------- 190 (437)
T 3gre_A 135 IIVLKVNHYQQESEVKFLNCE-CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN----------------------- 190 (437)
T ss_dssp EEEEEEEEEEETTEEEEEEEE-EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET-----------------------
T ss_pred EEEEEeccccCCceeeccccc-eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC-----------------------
Confidence 2233332 133333322211 1100000 001112333 6677877776533
Q ss_pred CCCCCcceeeCCcccccCCccCceEEEEEccCCceEec-cCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeee
Q 003886 251 NSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKY 329 (789)
Q Consensus 251 ~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l-~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~ 329 (789)
+..|.+||+.+++.... .+......+..++|+|||+. |+..+
T Consensus 191 ---------------------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~----l~s~~------------ 233 (437)
T 3gre_A 191 ---------------------LSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCV----LILGT------------ 233 (437)
T ss_dssp ---------------------TSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCE----EEEEE------------
T ss_pred ---------------------CCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCE----EEEEc------------
Confidence 36799999988876443 21113457789999999987 66555
Q ss_pred eccCCcceEEEecccccchhhhhhhhcCCCCCCCe-eecC-CCCCccC----cceecCCCCEEEEEecCCCCCCCCcccc
Q 003886 330 CYNRPCALYAVRVSLYKSEASELELKESSSEDLPV-VNLT-ESISSAF----FPRFSPDGKFLVFLSAKSSVDSGAHSAT 403 (789)
Q Consensus 330 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~Lt-~~~~~~~----~p~~SpDG~~la~~s~~~~~~~g~~~~~ 403 (789)
.+..|.++|+ ..++. ..+. .+...+. .|.|+|||+.|+..+.+
T Consensus 234 ---~dg~i~iwd~-----------------~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~d----------- 282 (437)
T 3gre_A 234 ---TRGIIDIWDI-----------------RFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSK----------- 282 (437)
T ss_dssp ---TTSCEEEEET-----------------TTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTT-----------
T ss_pred ---CCCeEEEEEc-----------------CCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCC-----------
Confidence 2336888887 33333 3332 3333333 44778889887765543
Q ss_pred ceeEEeecCCCCCCCccccee-eEEeeeeccCC-----CCCcc-ccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECC
Q 003886 404 DSLHRIDWPTNGNFSSLEKIV-DVIPVVQCAEG-----DCFPG-LYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS 476 (789)
Q Consensus 404 ~~L~~~d~~~~~~~~~t~~~~-~v~~~~~~~~~-----~~f~g-~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~ 476 (789)
..|.+||+.++.......+.. .+..+.-.+.+ ..+.| .+...+..+.|+ +++ +++++..++ .|..+|+.
T Consensus 283 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-~l~s~~~d~--~i~~wd~~ 358 (437)
T 3gre_A 283 TFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-ILLTDEATS--SIVMFSLN 358 (437)
T ss_dssp EEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-EEEEEGGGT--EEEEEETT
T ss_pred CcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce-EEEecCCCC--eEEEEECC
Confidence 259999998755321111100 00000000000 00111 122235677888 664 556665555 45556777
Q ss_pred CCcEEEe
Q 003886 477 SGELLRI 483 (789)
Q Consensus 477 tg~~~~l 483 (789)
+++....
T Consensus 359 ~~~~~~~ 365 (437)
T 3gre_A 359 ELSSSKA 365 (437)
T ss_dssp CGGGCEE
T ss_pred CcccceE
Confidence 7764443
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.80 E-value=8.5e-07 Score=95.39 Aligned_cols=84 Identities=12% Similarity=0.087 Sum_probs=51.2
Q ss_pred ceecCCCCEEEEEecCCCCCCCCcc-ccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCC
Q 003886 377 PRFSPDGKFLVFLSAKSSVDSGAHS-ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 455 (789)
Q Consensus 377 p~~SpDG~~la~~s~~~~~~~g~~~-~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg 455 (789)
..++|||++|+....... .+.|. ....|+++|..+++... -+++ . .....+.|+|||
T Consensus 272 ~~~s~d~~~lyV~~~~~~--~~~~~~~~~~V~VID~~t~~vv~-------~i~~---g----------~~p~~i~~s~Dg 329 (373)
T 2mad_H 272 VAYLKSSDGIYLLTSEQS--AWKLHAAAKEVTSVTGLVGQTSS-------QISL---G----------HDVDAISVAQDG 329 (373)
T ss_pred EEECCCCCEEEEEeccCC--cccccCCCCeEEEEECCCCEEEE-------EEEC---C----------CCcCeEEECCCC
Confidence 578999998766543211 01111 23579999988754421 0111 0 023467899999
Q ss_pred CEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003886 456 CTMLLSSIWGSSQVIISVNVSSGELLRI 483 (789)
Q Consensus 456 ~~l~~~~~~~~~~~l~~~dl~tg~~~~l 483 (789)
++++|..+. +...|..+|+.++++...
T Consensus 330 ~~~l~v~~~-~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 330 GPDLYALSA-GTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CeEEEEEcC-CCCeEEEEECCCCCEEee
Confidence 966666543 235789999999888765
|
| >2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase, biodegradation, catal; HET: PG4; 1.20A {Paucimonas lemoignei} PDB: 2vtv_A* 2x76_A | Back alignment and structure |
|---|
Probab=98.80 E-value=9.2e-09 Score=108.38 Aligned_cols=121 Identities=18% Similarity=0.152 Sum_probs=85.6
Q ss_pred EEEEEecCCCCCCCCCcEEEEEcCCCCCC--------Cchhh----HHHHHHHHHCCcE---EEEEcCCCCCCCCchhhc
Q 003886 577 EAIFVSSSHKKDCSCDPLIVVLHGGPHSV--------SLSSY----SKSLAFLSSVGYS---LLIVNYRGSLGFGEEALQ 641 (789)
Q Consensus 577 ~~~~~~P~~~~~~~~~P~vv~~HGg~~~~--------~~~~~----~~~~~~la~~Gy~---V~~~d~rGs~G~G~~~~~ 641 (789)
.|....|. .. ..+.||++||..... ....| ......|.++||. |+++|++| +|.+...
T Consensus 29 gG~~~~p~---~~-~~~pVVlvHG~~~~~~~~~~~~~~~~~w~~~~~~l~~~L~~~Gy~~~~V~~~D~~g---~G~S~~~ 101 (342)
T 2x5x_A 29 GGFGGGSC---TA-TKTPVIFIHGNGDNAISFDMPPGNVSGYGTPARSVYAELKARGYNDCEIFGVTYLS---SSEQGSA 101 (342)
T ss_dssp CEEECCSS---CC-CSCCEEEECCTTCCGGGGGCCCCCCTTTCCCSSCHHHHHHHTTCCTTSEEEECCSC---HHHHTCG
T ss_pred CcccCCCC---CC-CCCeEEEECCcCCCcccccccccccccccccHHHHHHHHHhCCCCCCeEEEEeCCC---CCccCCc
Confidence 34455554 22 334588899976632 13356 6678899999998 99999987 4433211
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC--CCceeEEEEeCCccc
Q 003886 642 SLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCN 707 (789)
Q Consensus 642 ~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~--p~~~~a~v~~~pv~~ 707 (789)
.. ........+++.+.++.++++ .+.++|.|+||||||.++..++.++ |++++++|+.+|...
T Consensus 102 ~~-~~~~~~~~~~l~~~I~~l~~~--~g~~~v~LVGHSmGG~iA~~~a~~~~~p~~V~~lVlla~p~~ 166 (342)
T 2x5x_A 102 QY-NYHSSTKYAIIKTFIDKVKAY--TGKSQVDIVAHSMGVSMSLATLQYYNNWTSVRKFINLAGGIR 166 (342)
T ss_dssp GG-CCBCHHHHHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHHTCGGGEEEEEEESCCTT
T ss_pred cc-cCCHHHHHHHHHHHHHHHHHH--hCCCCEEEEEECHHHHHHHHHHHHcCchhhhcEEEEECCCcc
Confidence 10 111223467888888888776 3457899999999999999999988 899999999987653
|
| >3ils_A PKS, aflatoxin biosynthesis polyketide synthase; A/B hydrolase, thioesterase, norsolorinic acid, P polyketide, acyltransferase; 1.70A {Aspergillus parasiticus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-08 Score=103.60 Aligned_cols=102 Identities=12% Similarity=0.043 Sum_probs=69.9
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (789)
....|.||++||++++ ...|..... | ..+|.|+++|++| ++.... ...+++++.+.+..+++.- .
T Consensus 18 ~~~~~~lv~lhg~~~~--~~~~~~~~~-l-~~~~~v~~~d~~G---~~~~~~-------~~~~~~~~~~~~~~~i~~~-~ 82 (265)
T 3ils_A 18 MVARKTLFMLPDGGGS--AFSYASLPR-L-KSDTAVVGLNCPY---ARDPEN-------MNCTHGAMIESFCNEIRRR-Q 82 (265)
T ss_dssp TTSSEEEEEECCTTCC--GGGGTTSCC-C-SSSEEEEEEECTT---TTCGGG-------CCCCHHHHHHHHHHHHHHH-C
T ss_pred CCCCCEEEEECCCCCC--HHHHHHHHh-c-CCCCEEEEEECCC---CCCCCC-------CCCCHHHHHHHHHHHHHHh-C
Confidence 3456889999997764 455655555 5 6789999999998 332211 1123555544443333321 1
Q ss_pred CCccEEEEEcCccHHHHHHHHH---hCCCceeEEEEeCCc
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIG---QAPDKFVAAAARNPL 705 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~---~~p~~~~a~v~~~pv 705 (789)
...++.++|||+||.++..++. .++++++++|+.++.
T Consensus 83 ~~~~~~l~GhS~Gg~ia~~~a~~l~~~~~~v~~lvl~~~~ 122 (265)
T 3ils_A 83 PRGPYHLGGWSSGGAFAYVVAEALVNQGEEVHSLIIIDAP 122 (265)
T ss_dssp SSCCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCC
T ss_pred CCCCEEEEEECHhHHHHHHHHHHHHhCCCCceEEEEEcCC
Confidence 2358999999999999999987 678889999988764
|
| >1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET: DDQ; 2.99A {Equus caballus} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.9e-09 Score=116.13 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=79.5
Q ss_pred CCCcEEEEEcCCCCCCCchhhHH-HHHHHHHC-CcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSK-SLAFLSSV-GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~-~~~~la~~-Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (789)
...|+||++||.+.+. ...|.. ....|+++ ||.|+++|+|| +|.+......... ..-.+|+.+.++++.++..
T Consensus 68 ~~~p~vvliHG~~~~~-~~~w~~~~~~~l~~~~~~~Vi~~D~~g---~G~S~~~~~~~~~-~~~~~dl~~~i~~L~~~~g 142 (452)
T 1w52_X 68 SSRKTHFVIHGFRDRG-EDSWPSDMCKKILQVETTNCISVDWSS---GAKAEYTQAVQNI-RIVGAETAYLIQQLLTELS 142 (452)
T ss_dssp TTSCEEEEECCTTCCS-SSSHHHHHHHHHHTTSCCEEEEEECHH---HHTSCHHHHHHHH-HHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEEcCCCCCC-CchHHHHHHHHHHhhCCCEEEEEeccc---ccccccHHHHHhH-HHHHHHHHHHHHHHHHhcC
Confidence 4568999999977653 245655 45666654 99999999997 3332111000000 1114567777888765433
Q ss_pred CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
++.+++.|+|||+||.++..++.++|++++++|+.+|..
T Consensus 143 ~~~~~i~LvGhSlGg~vA~~~a~~~p~~v~~iv~ldpa~ 181 (452)
T 1w52_X 143 YNPENVHIIGHSLGAHTAGEAGRRLEGRVGRVTGLDPAE 181 (452)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCcccEEEEEeCHHHHHHHHHHHhcccceeeEEeccccc
Confidence 567899999999999999999999999999999998754
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.1e-06 Score=97.39 Aligned_cols=304 Identities=8% Similarity=-0.028 Sum_probs=159.7
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEee-cCCCCccceeecCCcceecccEEEEeC----CCCCeEEEEecCCCC
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVIS-KENENSVTFQWAPFPVEMTGASAVVPS----PSGSKLLVVRNPENE 177 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~lt~~~~~~~~~~~~~~~~S----PdG~~la~~~~~~~~ 177 (789)
..||||+++ |+.+. ...+..+++. .......++..+ .+....++| |||++++......
T Consensus 203 ~~SpDGr~l-yv~~~--------dg~V~viD~~~~t~~~v~~i~~G------~~P~~ia~s~~~~pDGk~l~v~n~~~-- 265 (567)
T 1qks_A 203 RLSASGRYL-FVIGR--------DGKVNMIDLWMKEPTTVAEIKIG------SEARSIETSKMEGWEDKYAIAGAYWP-- 265 (567)
T ss_dssp EECTTSCEE-EEEET--------TSEEEEEETTSSSCCEEEEEECC------SEEEEEEECCSTTCTTTEEEEEEEET--
T ss_pred EECCCCCEE-EEEcC--------CCeEEEEECCCCCCcEeEEEecC------CCCceeEEccccCCCCCEEEEEEccC--
Confidence 357888876 43321 2356666652 111111222222 234577899 7999997765543
Q ss_pred CCeEEEEe-cCCceeEEEecCCC-ccccccCCC-cccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCC
Q 003886 178 SPIQFELW-SQSQLEKEFHVPQT-VHGSVYADG-WFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK 254 (789)
Q Consensus 178 ~~~~~~i~-~~~~~~~~~~~~~~-~~g~v~~d~-~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (789)
.++..++ .+.+..+.+.+... ..+.-|..+ .+..+..|+++..+++...
T Consensus 266 -~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~--------------------------- 317 (567)
T 1qks_A 266 -PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK--------------------------- 317 (567)
T ss_dssp -TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET---------------------------
T ss_pred -CeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec---------------------------
Confidence 3466666 45555555554211 110001011 2346677888765544321
Q ss_pred CcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCC
Q 003886 255 GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRP 334 (789)
Q Consensus 255 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~ 334 (789)
....|+++|..+.+...+..+..........|+|||++ ++...+ ..
T Consensus 318 ----------------~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~----~~va~~--------------~s 363 (567)
T 1qks_A 318 ----------------ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY----FITAAN--------------AR 363 (567)
T ss_dssp ----------------TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCE----EEEEEG--------------GG
T ss_pred ----------------CCCeEEEEecCCCccceeeeeeccccccCceECCCCCE----EEEEeC--------------CC
Confidence 23678888887654322211222223456789999996 544442 12
Q ss_pred cceEEEecccccchhhhhhhhcCCCCCCCeeecCCC--C--CccCcce-ecCCCCEEEEEecCCCCCCCCccccceeEEe
Q 003886 335 CALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--I--SSAFFPR-FSPDGKFLVFLSAKSSVDSGAHSATDSLHRI 409 (789)
Q Consensus 335 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~--~--~~~~~p~-~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~ 409 (789)
..|.++|+ .+++......- . .....+. ++|||+.++.+++-. ...|-++
T Consensus 364 n~V~ViD~-----------------~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g---------~~~Vsvi 417 (567)
T 1qks_A 364 NKLVVIDT-----------------KEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMG---------DDSVALI 417 (567)
T ss_dssp TEEEEEET-----------------TTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSS---------SSEEEEE
T ss_pred CeEEEEEC-----------------CCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCC---------CCeEEEe
Confidence 36889998 55544322211 1 1112334 488888775555432 2358899
Q ss_pred ecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeC-C---eEEEEEEECCCCcE-----
Q 003886 410 DWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-S---SQVIISVNVSSGEL----- 480 (789)
Q Consensus 410 d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~-~---~~~l~~~dl~tg~~----- 480 (789)
|.++++.... .+.++..+..... ....+..+|||+++|+..... . ...|.++|+++.++
T Consensus 418 d~~~~~~~~~---~~kvv~~i~~~g~---------g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~ 485 (567)
T 1qks_A 418 GTDPEGHPDN---AWKILDSFPALGG---------GSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDP 485 (567)
T ss_dssp ECCTTTCTTT---BTSEEEEEECSCS---------CCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCC
T ss_pred cCCCCCCccc---cCEEEEEEecCCC---------CCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCC
Confidence 9876432111 1122332222110 112245689999998764222 1 34678888765511
Q ss_pred --EEec--------CCCCCceeEEeeecCCEEEEEEeC-CCCCCeEEEEeeccc
Q 003886 481 --LRIT--------PAESNFSWSLLTLDGDNIIAVSSS-PVDVPQVKYGYFVDK 523 (789)
Q Consensus 481 --~~lt--------~~~~~~~~~~~s~dg~~l~~~~ss-~~~p~~i~~~~~~~~ 523 (789)
+.+. ..........|+++|++++++.-+ -.....|.++|.++.
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 486 EFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp CEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 3332 112233456889999999887533 335567888886543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=98.79 E-value=4.4e-07 Score=97.08 Aligned_cols=188 Identities=14% Similarity=0.129 Sum_probs=108.9
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
++....++++++.++++...+ ....+|+ .++....+.....+ ..+.|++++. +.+. +..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d----~~v~iWd~~~~~~~~~~~~~~~v----------~~v~~~~~~~--~~~~-~~~-- 120 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVK----EVVHIWDDVKKQDVSRIKVDAPV----------KDLFLSREFI--VVSY-GDV-- 120 (355)
T ss_dssp CCCEEEECTTSSEEEEECSST----TEEEEEETTTTEEEEEEECSSCE----------EEEEECSSEE--EEEE-TTE--
T ss_pred CeEEEEEcCCCCEEEEEECCc----cEEEEEECCCCcEEEEEECCCce----------EEEEEcCCEE--EEEE-cCE--
Confidence 466788999999998875543 2567773 45444444433322 6888888753 3222 211
Q ss_pred CCCccCCCC-CCCCCCcCCCCCCCcceeeCCcccccC--CccCceEEEEEccCCc-----------------eEeccCCC
Q 003886 233 KPTFSLGST-KGGSSDKDCNSWKGQGDWEEDWGETYA--GKRQPSLFVININSGE-----------------VQAVKGIP 292 (789)
Q Consensus 233 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~g~~~~--~~~~~~l~v~d~~~g~-----------------~~~l~~~~ 292 (789)
...|+.... +....... ..+...+.+ ..... +.....|.+||+.+++ ...+ ..
T Consensus 121 i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~--~~ 193 (355)
T 3vu4_A 121 ISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI--KA 193 (355)
T ss_dssp EEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEE--CC
T ss_pred EEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE--Ec
Confidence 112222111 11111111 000111221 11111 3456789999998875 4445 23
Q ss_pred CCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcc-eEEEecccccchhhhhhhhcCCCCCC-CeeecC-C
Q 003886 293 KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA-LYAVRVSLYKSEASELELKESSSEDL-PVVNLT-E 369 (789)
Q Consensus 293 ~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~-l~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt-~ 369 (789)
....+..++|+|||+. |+..+ .+.. |.++|+ .++ ....+. .
T Consensus 194 h~~~v~~~~~s~~g~~----l~s~s---------------~d~~~v~iwd~-----------------~~~~~~~~~~~g 237 (355)
T 3vu4_A 194 HTNPIKMVRLNRKSDM----VATCS---------------QDGTIIRVFKT-----------------EDGVLVREFRRG 237 (355)
T ss_dssp CSSCEEEEEECTTSSE----EEEEE---------------TTCSEEEEEET-----------------TTCCEEEEEECT
T ss_pred cCCceEEEEECCCCCE----EEEEe---------------CCCCEEEEEEC-----------------CCCcEEEEEEcC
Confidence 3456789999999997 76665 2335 888887 444 345555 2
Q ss_pred -CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCC
Q 003886 370 -SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 370 -~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
+...+...+|||||++|+..+.+. .+.+||+..+.
T Consensus 238 ~h~~~v~~~~~s~~~~~l~s~s~d~-----------~v~iw~~~~~~ 273 (355)
T 3vu4_A 238 LDRADVVDMKWSTDGSKLAVVSDKW-----------TLHVFEIFNDQ 273 (355)
T ss_dssp TCCSCEEEEEECTTSCEEEEEETTC-----------EEEEEESSCCS
T ss_pred CCCCcEEEEEECCCCCEEEEEECCC-----------EEEEEEccCCC
Confidence 566788999999999998877553 58999987653
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.1e-07 Score=98.67 Aligned_cols=205 Identities=10% Similarity=0.075 Sum_probs=118.7
Q ss_pred cccEEEEeCC-CCCeEEEEecCCCCCCeEEEEec--C---Cc-e--eEEEecCCCccccccCCCcccceeecCCCCEEEE
Q 003886 154 TGASAVVPSP-SGSKLLVVRNPENESPIQFELWS--Q---SQ-L--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAY 224 (789)
Q Consensus 154 ~~~~~~~~SP-dG~~la~~~~~~~~~~~~~~i~~--~---~~-~--~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~ 224 (789)
+.+...+||| ||++||..+..+ .+.+|+ . +. . ....... +.| ..+.|+||++.|+.
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg-----~v~vwd~~~~~~~~~~~~~~~~~h~----~~v------~~~~~~~~~~~l~s 128 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQG-----VIKIWNLKEIIVGEVYSSSLTYDCS----STV------TQITMIPNFDAFAV 128 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTS-----EEEEEEHHHHHTTCCCSCSEEEECS----SCE------EEEEECTTSSEEEE
T ss_pred CceEEEEECCCCCCEEEEecCCc-----eEEEeECcccccCcccceeeeccCC----CCE------EEEEEeCCCCEEEE
Confidence 4588999999 999999887654 566672 2 22 1 1111112 222 79999999999887
Q ss_pred EeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEcc---CCceEecc---------CCC
Q 003886 225 VAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ---SGEVQAVK---------GIP 292 (789)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~---~g~~~~l~---------~~~ 292 (789)
.+.+ ..|.+||++ +++..... -.+
T Consensus 129 ~s~d--------------------------------------------g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~ 164 (437)
T 3gre_A 129 SSKD--------------------------------------------GQIIVLKVNHYQQESEVKFLNCECIRKINLKN 164 (437)
T ss_dssp EETT--------------------------------------------SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGG
T ss_pred EeCC--------------------------------------------CEEEEEEeccccCCceeeccccceeEEEEccC
Confidence 6543 457777763 44332220 000
Q ss_pred --CCCccceEE--EeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeec
Q 003886 293 --KSLSVGQVV--WAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNL 367 (789)
Q Consensus 293 --~~~~~~~~~--wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~L 367 (789)
....+..+. |+||++. |+..+ .+..|+++|+ .+++ ...+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~----l~~~~---------------~d~~i~iwd~-----------------~~~~~~~~~ 208 (437)
T 3gre_A 165 FGKNEYAVRMRAFVNEEKSL----LVALT---------------NLSRVIIFDI-----------------RTLERLQII 208 (437)
T ss_dssp GSSCCCEEEEEEEECSSCEE----EEEEE---------------TTSEEEEEET-----------------TTCCEEEEE
T ss_pred cccccCceEEEEEEcCCCCE----EEEEe---------------CCCeEEEEeC-----------------CCCeeeEEE
Confidence 111222222 6677775 55554 2347888998 3343 4455
Q ss_pred CC--CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCc-c-cceeeEEeeeeccCCCCCccccc
Q 003886 368 TE--SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS-L-EKIVDVIPVVQCAEGDCFPGLYS 443 (789)
Q Consensus 368 t~--~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~-t-~~~~~v~~~~~~~~~~~f~g~~~ 443 (789)
.. +...+...+|+|||+.|+..+.+. .|.+||+.++..... . .....+..+.
T Consensus 209 ~~~~h~~~v~~~~~s~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~v~~~~------------- 264 (437)
T 3gre_A 209 ENSPRHGAVSSICIDEECCVLILGTTRG-----------IIDIWDIRFNVLIRSWSFGDHAPITHVE------------- 264 (437)
T ss_dssp ECCGGGCCEEEEEECTTSCEEEEEETTS-----------CEEEEETTTTEEEEEEBCTTCEEEEEEE-------------
T ss_pred ccCCCCCceEEEEECCCCCEEEEEcCCC-----------eEEEEEcCCccEEEEEecCCCCceEEEE-------------
Confidence 54 456788999999999988777553 599999887543211 1 1111111110
Q ss_pred cCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003886 444 SSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (789)
Q Consensus 444 ~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~l 483 (789)
..+.|++|++.| +++..++ .|..+|+.+++....
T Consensus 265 ---~~~~~s~~~~~l-~s~~~dg--~i~iwd~~~~~~~~~ 298 (437)
T 3gre_A 265 ---VCQFYGKNSVIV-VGGSSKT--FLTIWNFVKGHCQYA 298 (437)
T ss_dssp ---ECTTTCTTEEEE-EEESTTE--EEEEEETTTTEEEEE
T ss_pred ---eccccCCCccEE-EEEcCCC--cEEEEEcCCCcEEEE
Confidence 122577787644 5544444 566668877775543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-06 Score=91.17 Aligned_cols=253 Identities=10% Similarity=-0.025 Sum_probs=135.4
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 180 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (789)
.+.++|||+.+.++... ...|+.++.. ++ ...+.... ......+++|||+.++. ... ...
T Consensus 32 g~~~d~~g~~l~~~~~~--------~~~i~~~~~~--~~-~~~~~~~~-----~~~~~l~~~~dg~l~v~-~~~---~~~ 91 (296)
T 3e5z_A 32 GPVYVPARSAVIFSDVR--------QNRTWAWSDD--GQ-LSPEMHPS-----HHQNGHCLNKQGHLIAC-SHG---LRR 91 (296)
T ss_dssp EEEEEGGGTEEEEEEGG--------GTEEEEEETT--SC-EEEEESSC-----SSEEEEEECTTCCEEEE-ETT---TTE
T ss_pred CCeEeCCCCEEEEEeCC--------CCEEEEEECC--CC-eEEEECCC-----CCcceeeECCCCcEEEE-ecC---CCe
Confidence 34556889867665322 2367776642 22 33333221 34678899999985433 221 234
Q ss_pred EEEEec-CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeec-CCCCCCCccCCCCCCCCCCcCCCCCCCcce
Q 003886 181 QFELWS-QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE-PSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 258 (789)
Q Consensus 181 ~~~i~~-~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (789)
++.++. +++...+........ ......+.++|||+ |+++... .... .+.
T Consensus 92 i~~~d~~~g~~~~~~~~~~~~~-----~~~~~~i~~d~~G~-l~vtd~~~g~~~--~~~--------------------- 142 (296)
T 3e5z_A 92 LERQREPGGEWESIADSFEGKK-----LNSPNDVCLAPDGS-LWFSDPTYGIDK--PEE--------------------- 142 (296)
T ss_dssp EEEECSTTCCEEEEECEETTEE-----CCCCCCEEECTTSC-EEEEECSHHHHC--GGG---------------------
T ss_pred EEEEcCCCCcEEEEeeccCCCC-----CCCCCCEEECCCCC-EEEECCcccccc--ccc---------------------
Confidence 666663 666655543211110 00125789999997 4432110 0000 000
Q ss_pred eeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceE
Q 003886 259 WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (789)
Q Consensus 259 ~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~ 338 (789)
+...........|+.++.+ ++.+.+ .........++|+|||+. | ++. . ....|+
T Consensus 143 ----~~~~~~~~~~~~l~~~~~~-g~~~~~--~~~~~~~~gi~~s~dg~~----l-v~~-~-------------~~~~i~ 196 (296)
T 3e5z_A 143 ----GYGGEMELPGRWVFRLAPD-GTLSAP--IRDRVKPNGLAFLPSGNL----L-VSD-T-------------GDNATH 196 (296)
T ss_dssp ----SSCCCCCSSSCEEEEECTT-SCEEEE--ECCCSSEEEEEECTTSCE----E-EEE-T-------------TTTEEE
T ss_pred ----cccccccCCCcEEEEECCC-CCEEEe--ecCCCCCccEEECCCCCE----E-EEe-C-------------CCCeEE
Confidence 0000000123579999887 676665 233334568999999997 6 443 1 223688
Q ss_pred EEecccccchhhhhhhhcCCCCCCCe----eecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 339 AVRVSLYKSEASELELKESSSEDLPV----VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~----~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
++++. ..+.. +.+....+.....++++||+ |+ ++.. ..|+++|.++
T Consensus 197 ~~~~~----------------~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~-v~~~-----------~~v~~~~~~g- 246 (296)
T 3e5z_A 197 RYCLN----------------ARGETEYQGVHFTVEPGKTDGLRVDAGGL-IW-ASAG-----------DGVHVLTPDG- 246 (296)
T ss_dssp EEEEC----------------SSSCEEEEEEEECCSSSCCCSEEEBTTSC-EE-EEET-----------TEEEEECTTS-
T ss_pred EEEEC----------------CCCcCcCCCeEeeCCCCCCCeEEECCCCC-EE-EEcC-----------CeEEEECCCC-
Confidence 88872 12333 22222234466789999998 33 3322 2489998753
Q ss_pred CCCCcccceeeEEeeeeccCCCCCccccccCCCCCcc-ccCCCEEEEEEEeCCeEEEEEEECCCCcEEE
Q 003886 415 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW-LSDGCTMLLSSIWGSSQVIISVNVSSGELLR 482 (789)
Q Consensus 415 ~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~w-s~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~ 482 (789)
+.. ..+..+. .+..+.| ++|++.|++++. ..||++++.+++++.
T Consensus 247 ~~~----------~~~~~~~----------~~~~~~f~~~d~~~L~v~t~----~~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 247 DEL----------GRVLTPQ----------TTSNLCFGGPEGRTLYMTVS----TEFWSIETNVRGLEH 291 (296)
T ss_dssp CEE----------EEEECSS----------CCCEEEEESTTSCEEEEEET----TEEEEEECSCCBCCC
T ss_pred CEE----------EEEECCC----------CceeEEEECCCCCEEEEEcC----CeEEEEEcccccccc
Confidence 211 0011100 1235567 589998887753 269999998887654
|
| >1ei9_A Palmitoyl protein thioesterase 1; alpha/beta hydrolase, glycoprotein, hydrolase; HET: NDG NAG; 2.25A {Bos taurus} SCOP: c.69.1.13 PDB: 1eh5_A* 1exw_A* 3gro_A | Back alignment and structure |
|---|
Probab=98.73 E-value=2e-08 Score=103.41 Aligned_cols=104 Identities=17% Similarity=0.120 Sum_probs=68.7
Q ss_pred cEEEEEcCCCCCCCc-hhhHHHHHHHHHC--CcEEEEEcCCCCCCCCchhhccCCCCCCcccHH-HHHHHHHHHHHcCCC
Q 003886 593 PLIVVLHGGPHSVSL-SSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVN-DVLTAIDHVIDMGLA 668 (789)
Q Consensus 593 P~vv~~HGg~~~~~~-~~~~~~~~~la~~--Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~-D~~~~i~~l~~~~~~ 668 (789)
+.||++||.+.+... ..|......|++. ||.|+++|+ | +|.+..... .+. ..+. ++.+.++++......
T Consensus 6 ~pvVllHG~~~~~~~~~~~~~~~~~L~~~~~g~~v~~~d~-G---~g~s~~~~~--~~~-~~~~~~~~~~~~~l~~~~~l 78 (279)
T 1ei9_A 6 LPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEI-G---KTLREDVEN--SFF-LNVNSQVTTVCQILAKDPKL 78 (279)
T ss_dssp CCEEEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCC-S---SSHHHHHHH--HHH-SCHHHHHHHHHHHHHSCGGG
T ss_pred CcEEEECCCCCCCCCcccHHHHHHHHHHHCCCcEEEEEEe-C---CCCcccccc--ccc-cCHHHHHHHHHHHHHhhhhc
Confidence 348899997665322 4677778888765 889999997 6 554321000 000 1233 333444444332111
Q ss_pred CCccEEEEEcCccHHHHHHHHHhCCCc-eeEEEEeCC
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQAPDK-FVAAAARNP 704 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~~p~~-~~a~v~~~p 704 (789)
.+++.++|||+||.++..++.++|++ ++.+|+.++
T Consensus 79 -~~~~~lvGhSmGG~ia~~~a~~~~~~~v~~lv~~~~ 114 (279)
T 1ei9_A 79 -QQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGG 114 (279)
T ss_dssp -TTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESC
T ss_pred -cCCEEEEEECHHHHHHHHHHHHcCCcccceEEEecC
Confidence 26899999999999999999999984 999998775
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-07 Score=106.95 Aligned_cols=162 Identities=9% Similarity=-0.031 Sum_probs=94.4
Q ss_pred ceEEEEEccCCceE------------eccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEE
Q 003886 273 PSLFVININSGEVQ------------AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (789)
Q Consensus 273 ~~l~v~d~~~g~~~------------~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (789)
..|.+||+.+++.. .+ ......+..++|+|++ . |+..+ .+..|.++
T Consensus 235 gtvrlWd~~~~~~~~~~~~~~~~p~~~l--~~h~~~v~sv~~s~~~-~----lasgs---------------~DgtV~lW 292 (524)
T 2j04_B 235 GTINFLEIIDNATDVHVFKMCEKPSLTL--SLADSLITTFDFLSPT-T----VVCGF---------------KNGFVAEF 292 (524)
T ss_dssp SCEEEEECCCCSSSSSEEECCCSCSEEE--CCTTTCEEEEEESSSS-E----EEEEE---------------TTSEEEEE
T ss_pred CeEEEEEcCCCccccccceeecCceEEE--EcCCCCEEEEEecCCC-e----EEEEe---------------CCCEEEEE
Confidence 45777777665321 22 1223467789999864 4 65554 23368888
Q ss_pred ecccccchhhhhhhhcCCCCCC-C-eeecCCCCCccCcc--eecCCC-CEEEEEecCCCCCCCCccccceeEEeecCCCC
Q 003886 341 RVSLYKSEASELELKESSSEDL-P-VVNLTESISSAFFP--RFSPDG-KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~-~-~~~Lt~~~~~~~~p--~~SpDG-~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
|+ .++ . ...+..+...+... .|+||| +.||..+.+. .+.+||+.++.
T Consensus 293 D~-----------------~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~-----------tvklWD~~~~~ 344 (524)
T 2j04_B 293 DL-----------------TDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDG-----------YFYIFNPKDIA 344 (524)
T ss_dssp ET-----------------TBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTS-----------EEEEECGGGHH
T ss_pred EC-----------------CCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCC-----------eEEEEECCCCC
Confidence 87 332 2 23455666667777 689999 7777766543 58999986533
Q ss_pred CCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE-EEecCCCCCceeEE
Q 003886 416 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL-LRITPAESNFSWSL 494 (789)
Q Consensus 416 ~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~~~~~~ 494 (789)
......+. ..+ ..+..+.|+||++.+ +++..++. +..+|+.++.. ..+......+....
T Consensus 345 ~~~~~~~~--------------~~~---~~v~~v~fsp~~~~l-~s~~~d~t--v~lwd~~~~~~~~~l~gH~~~V~sva 404 (524)
T 2j04_B 345 TTKTTVSR--------------FRG---SNLVPVVYCPQIYSY-IYSDGASS--LRAVPSRAAFAVHPLVSRETTITAIG 404 (524)
T ss_dssp HHCEEEEE--------------CSC---CSCCCEEEETTTTEE-EEECSSSE--EEEEETTCTTCCEEEEECSSCEEEEE
T ss_pred cccccccc--------------ccc---CcccceEeCCCcCeE-EEeCCCCc--EEEEECcccccceeeecCCCceEEEE
Confidence 21100000 000 124567899999864 44444444 45557777764 44444444455567
Q ss_pred eeecCCEEEE
Q 003886 495 LTLDGDNIIA 504 (789)
Q Consensus 495 ~s~dg~~l~~ 504 (789)
|+|+|..|+.
T Consensus 405 ~Sp~g~~l~S 414 (524)
T 2j04_B 405 VSRLHPMVLA 414 (524)
T ss_dssp CCSSCCBCEE
T ss_pred eCCCCCeEEE
Confidence 8888886553
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-06 Score=93.09 Aligned_cols=99 Identities=16% Similarity=0.084 Sum_probs=57.6
Q ss_pred cceecCCCCEEEEEecCCCCCCCCcc-ccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccC
Q 003886 376 FPRFSPDGKFLVFLSAKSSVDSGAHS-ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 454 (789)
Q Consensus 376 ~p~~SpDG~~la~~s~~~~~~~g~~~-~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~D 454 (789)
..+|+|||++++........ .|.+. ....|+++|+.+++... .++ .. . ...+.|+||
T Consensus 258 ~~a~~~dg~~lyv~~~~~~~-~~~~~~~~~~v~viD~~t~~~v~-------~i~---~~----------~-p~~ia~spd 315 (361)
T 2oiz_A 258 LVGLHRASGRMYVFMHPDGK-EGTHKFPAAEIWVMDTKTKQRVA-------RIP---GR----------D-ALSMTIDQQ 315 (361)
T ss_dssp CEEEETTTTEEEEEEESSCC-TTCTTCCCSEEEEEETTTTEEEE-------EEE---CT----------T-CCEEEEETT
T ss_pred EEEEecCCCeEEEEEccCCC-cccccCCCceEEEEECCCCcEEE-------EEe---cC----------C-eeEEEECCC
Confidence 46899999987654431100 01111 13579999988754321 111 00 0 246789999
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCC--cEEEe-cCCCCCceeEEeeecCC
Q 003886 455 GCTMLLSSIWGSSQVIISVNVSSG--ELLRI-TPAESNFSWSLLTLDGD 500 (789)
Q Consensus 455 g~~l~~~~~~~~~~~l~~~dl~tg--~~~~l-t~~~~~~~~~~~s~dg~ 500 (789)
|++||.+ +. ..|..+|+.++ ++... ...........++|+|+
T Consensus 316 g~~l~v~-n~---~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 316 RNLMLTL-DG---GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TTEEEEE-CS---SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCEEEEe-CC---CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 9977644 33 55777799999 65443 33333334567788876
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=98.69 E-value=6.2e-07 Score=97.37 Aligned_cols=59 Identities=3% Similarity=0.090 Sum_probs=37.9
Q ss_pred cccEEEEeCC--------CCCeEEEEecCCCCCCeEEEEec--CC-ceeEEEecCCCccccccCCCcccceeecCCCCE-
Q 003886 154 TGASAVVPSP--------SGSKLLVVRNPENESPIQFELWS--QS-QLEKEFHVPQTVHGSVYADGWFEGISWNSDETL- 221 (789)
Q Consensus 154 ~~~~~~~~SP--------dG~~la~~~~~~~~~~~~~~i~~--~~-~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~- 221 (789)
+.+...+||| ||+.||..+.+. ...+|+ .+ ......... +.+ ..++|+|++..
T Consensus 137 ~~v~~v~~~p~~~~~~~~d~~~las~s~D~-----tv~~Wd~~~~~~~~~~~~~~----~~v------~~v~~~p~~~~~ 201 (393)
T 4gq1_A 137 NFVNDIDIADVYSADNRLAEQVIASVGDDC-----TLIIWRLTDEGPILAGYPLS----SPG------ISVQFRPSNPNQ 201 (393)
T ss_dssp SCEEEEEEEEEECTTCSEEEEEEEEEETTS-----EEEEEEEETTEEEEEEEECS----SCE------EEEEEETTEEEE
T ss_pred CceEEEEEccccccccCCCCCEEEEEECCC-----eEEEEECCCCceeeeecCCC----CCc------EEEEECCCCCce
Confidence 4588899998 999999887754 566773 22 222333222 223 68999999875
Q ss_pred EEEEee
Q 003886 222 IAYVAE 227 (789)
Q Consensus 222 la~~~~ 227 (789)
|+..+.
T Consensus 202 l~~~~~ 207 (393)
T 4gq1_A 202 LIVGER 207 (393)
T ss_dssp EEEEET
T ss_pred EEecCC
Confidence 444433
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.6e-06 Score=89.76 Aligned_cols=252 Identities=6% Similarity=-0.009 Sum_probs=133.1
Q ss_pred ecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003886 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (789)
Q Consensus 102 ~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (789)
+.+++||+ +.++.. ....|+.++. .+++.+.+.... ...+...+++|||+.++...........+
T Consensus 50 ~~~~~~g~-l~~~~~--------~~~~i~~~d~--~~~~~~~~~~~~----~~~~~~i~~~~dg~l~v~~~~~~~~~~~i 114 (333)
T 2dg1_A 50 LNFDRQGQ-LFLLDV--------FEGNIFKINP--ETKEIKRPFVSH----KANPAAIKIHKDGRLFVCYLGDFKSTGGI 114 (333)
T ss_dssp EEECTTSC-EEEEET--------TTCEEEEECT--TTCCEEEEEECS----SSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred cEECCCCC-EEEEEC--------CCCEEEEEeC--CCCcEEEEeeCC----CCCcceEEECCCCcEEEEeCCCCCCCceE
Confidence 34568887 434321 2346777664 333333333111 13477889999997554433221122457
Q ss_pred EEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceee
Q 003886 182 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (789)
Q Consensus 182 ~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (789)
+.++ .++....++... ... .....+.++|||+ |++.......
T Consensus 115 ~~~d~~~~~~~~~~~~~-~~~------~~~~~i~~d~~g~-l~v~~~~~~~----------------------------- 157 (333)
T 2dg1_A 115 FAATENGDNLQDIIEDL-STA------YCIDDMVFDSKGG-FYFTDFRGYS----------------------------- 157 (333)
T ss_dssp EEECTTSCSCEEEECSS-SSC------CCEEEEEECTTSC-EEEEECCCBT-----------------------------
T ss_pred EEEeCCCCEEEEEEccC-ccC------CcccceEECCCCC-EEEEeccccc-----------------------------
Confidence 7776 444444333211 110 1226789999996 4443321100
Q ss_pred CCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEE
Q 003886 261 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (789)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (789)
......|+++|.++++.+.+ .........++|+|||+. |++... ....|+++
T Consensus 158 --------~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~i~~~~dg~~----l~v~~~--------------~~~~i~~~ 209 (333)
T 2dg1_A 158 --------TNPLGGVYYVSPDFRTVTPI--IQNISVANGIALSTDEKV----LWVTET--------------TANRLHRI 209 (333)
T ss_dssp --------TBCCEEEEEECTTSCCEEEE--EEEESSEEEEEECTTSSE----EEEEEG--------------GGTEEEEE
T ss_pred --------cCCCceEEEEeCCCCEEEEe--ecCCCcccceEECCCCCE----EEEEeC--------------CCCeEEEE
Confidence 01235799999888777665 222224567899999997 666542 12268888
Q ss_pred ecccccchhhhhhhhcCCCCCCCeee--------cCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecC
Q 003886 341 RVSLYKSEASELELKESSSEDLPVVN--------LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 412 (789)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~~~--------Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~ 412 (789)
++.. ++..... +.. ........+++||+. |++... ...|+++|..
T Consensus 210 d~~~---------------~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l--~v~~~~---------~~~v~~~d~~ 262 (333)
T 2dg1_A 210 ALED---------------DGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNL--YVAMYG---------QGRVLVFNKR 262 (333)
T ss_dssp EECT---------------TSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCE--EEEEET---------TTEEEEECTT
T ss_pred EecC---------------CCcCcccccceEEEecCC-CCCCCceEECCCCCE--EEEEcC---------CCEEEEECCC
Confidence 8720 1111111 111 124556889999983 333221 1368999864
Q ss_pred CCCCCCcccceeeEEeeeeccCC--CCCccccccCCCCCccccCCCEEEEEEEeC---CeEEEEEEECC
Q 003886 413 TNGNFSSLEKIVDVIPVVQCAEG--DCFPGLYSSSILSNPWLSDGCTMLLSSIWG---SSQVIISVNVS 476 (789)
Q Consensus 413 ~~~~~~~t~~~~~v~~~~~~~~~--~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~---~~~~l~~~dl~ 476 (789)
+ +.. ..+..+.. ..+ ..+..+.|++||+.||+++..+ ....||++++.
T Consensus 263 g-~~~----------~~~~~~~~~~g~~-----~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 263 G-YPI----------GQILIPGRDEGHM-----LRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp S-CEE----------EEEECTTGGGTCS-----CBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred C-CEE----------EEEEcCCCccccc-----cCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 3 211 00111100 000 0234678899998898877653 34678888864
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.2e-06 Score=90.92 Aligned_cols=157 Identities=11% Similarity=0.058 Sum_probs=98.2
Q ss_pred ccEEEEeCC--CCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 155 GASAVVPSP--SGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 155 ~~~~~~~SP--dG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
.+...+|+| +|++++..+..+ .+.+| ..++..+.... ..... +..++|+|||+.||..+.
T Consensus 127 ~v~~~~~~~~~~~~~l~s~s~dg-----~i~~wd~~~~~~~~~~~~--~~~~~------i~~~~~~pdg~~lasg~~--- 190 (343)
T 3lrv_A 127 EIIYMYGHNEVNTEYFIWADNRG-----TIGFQSYEDDSQYIVHSA--KSDVE------YSSGVLHKDSLLLALYSP--- 190 (343)
T ss_dssp CEEEEECCC---CCEEEEEETTC-----CEEEEESSSSCEEEEECC--CSSCC------CCEEEECTTSCEEEEECT---
T ss_pred CEEEEEcCCCCCCCEEEEEeCCC-----cEEEEECCCCcEEEEEec--CCCCc------eEEEEECCCCCEEEEEcC---
Confidence 478899999 999998877554 35566 34444333321 11112 278999999998887533
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceE--eccCCCCCCccceEEEeeCCCC
Q 003886 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ--AVKGIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~--~l~~~~~~~~~~~~~wSPDg~~ 308 (789)
+..|.+||+.+++.. .+. ......+..++|+|||+.
T Consensus 191 -----------------------------------------dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~fs~~g~~ 228 (343)
T 3lrv_A 191 -----------------------------------------DGILDVYNLSSPDQASSRFP-VDEEAKIKEVKFADNGYW 228 (343)
T ss_dssp -----------------------------------------TSCEEEEESSCTTSCCEECC-CCTTSCEEEEEECTTSSE
T ss_pred -----------------------------------------CCEEEEEECCCCCCCccEEe-ccCCCCEEEEEEeCCCCE
Confidence 257899999988754 442 113457889999999997
Q ss_pred CccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCC---CCCccC--cceecCCC
Q 003886 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE---SISSAF--FPRFSPDG 383 (789)
Q Consensus 309 ~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~---~~~~~~--~p~~SpDG 383 (789)
|+..+. . .|.++|+. .......+.. +..... ..+|+|||
T Consensus 229 ----l~s~~~---------------~-~v~iwd~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 272 (343)
T 3lrv_A 229 ----MVVECD---------------Q-TVVCFDLR----------------KDVGTLAYPTYTIPEFKTGTVTYDIDDSG 272 (343)
T ss_dssp ----EEEEES---------------S-BEEEEETT----------------SSTTCBSSCCCBC-----CCEEEEECTTS
T ss_pred ----EEEEeC---------------C-eEEEEEcC----------------CCCcceeecccccccccccceEEEECCCC
Confidence 766651 1 58888873 1222222222 222222 48999999
Q ss_pred CEEEEEecCCCCCCCCccccceeEEeecCCCC
Q 003886 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 384 ~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
++|+..+..+ ..+.+|++..+.
T Consensus 273 ~~l~~~s~~d----------~~i~v~~~~~~~ 294 (343)
T 3lrv_A 273 KNMIAYSNES----------NSLTIYKFDKKT 294 (343)
T ss_dssp SEEEEEETTT----------TEEEEEEECTTT
T ss_pred CEEEEecCCC----------CcEEEEEEcccc
Confidence 9998776522 247888876543
|
| >2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A {Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.8e-08 Score=108.04 Aligned_cols=111 Identities=17% Similarity=0.236 Sum_probs=81.2
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCc---EEEEEcCCCCCCCCchh----hccCCC-----------------
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGY---SLLIVNYRGSLGFGEEA----LQSLPG----------------- 645 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy---~V~~~d~rGs~G~G~~~----~~~~~~----------------- 645 (789)
...|.||++||.+.+ ...|......|+++|| .|+++|++| +|.+. .....+
T Consensus 20 ~~~ppVVLlHG~g~s--~~~w~~la~~La~~Gy~~~~Via~DlpG---~G~S~~~~~Dv~~~G~~~~~G~n~~p~id~~~ 94 (484)
T 2zyr_A 20 EDFRPVVFVHGLAGS--AGQFESQGMRFAANGYPAEYVKTFEYDT---ISWALVVETDMLFSGLGSEFGLNISQIIDPET 94 (484)
T ss_dssp -CCCCEEEECCTTCC--GGGGHHHHHHHHHTTCCGGGEEEECCCH---HHHHHHTTTSTTTTTGGGHHHHHHGGGSCHHH
T ss_pred CCCCEEEEECCCCCC--HHHHHHHHHHHHHcCCCcceEEEEECCC---CCcccccccccccccccccccccccccccccc
Confidence 456779999997664 5678888889999999 799999997 44320 000000
Q ss_pred ----------CCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCC---CceeEEEEeCCccc
Q 003886 646 ----------KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLCN 707 (789)
Q Consensus 646 ----------~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p---~~~~a~v~~~pv~~ 707 (789)
......++++.+.++.++++ .+.+++.|+|||+||.+++.++.++| ++++++|+.+|..+
T Consensus 95 l~~v~~~~~~~~~~~~~~dla~~L~~ll~~--lg~~kV~LVGHSmGG~IAl~~A~~~Pe~~~~V~~LVlIapp~~ 167 (484)
T 2zyr_A 95 LDKILSKSRERLIDETFSRLDRVIDEALAE--SGADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWG 167 (484)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHHHHHH--HCCSCEEEEEETHHHHHHHHHHHTCHHHHHTEEEEEEESCCCS
T ss_pred ccccccccccCchhhhHHHHHHHHHHHHHH--hCCCCEEEEEECHHHHHHHHHHHHCccchhhhCEEEEECCccc
Confidence 00112356777788888776 34578999999999999999999887 48999999998765
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.2e-06 Score=89.44 Aligned_cols=85 Identities=19% Similarity=0.173 Sum_probs=51.0
Q ss_pred cceecCCCCEEEEEecCCCCCCCCcc-ccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccC
Q 003886 376 FPRFSPDGKFLVFLSAKSSVDSGAHS-ATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 454 (789)
Q Consensus 376 ~p~~SpDG~~la~~s~~~~~~~g~~~-~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~D 454 (789)
...++|||++|+...... ..|.|. ..++|.++|..+.+... -+++-. ....+.|+||
T Consensus 323 ~va~s~dg~rlyVa~~~~--~~gthk~~s~~VsVID~~T~kvv~-------~I~vg~-------------~P~gia~spD 380 (426)
T 3c75_H 323 QTAYHRQSDRIYLLVDQR--DEWKHKAASRFVVVLNAETGERIN-------KIELGH-------------EIDSINVSQD 380 (426)
T ss_dssp CEEEEGGGTEEEEEEEEC--CTTCTTSCEEEEEEEETTTCCEEE-------EEEEEE-------------EECEEEECCS
T ss_pred eeEEcCCCCEEEEEeccc--ccccccCCCCEEEEEECCCCeEEE-------EEECCC-------------CcCeEEEccC
Confidence 368999999876554321 012221 23579999998865421 111111 1246689999
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003886 455 GCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (789)
Q Consensus 455 g~~l~~~~~~~~~~~l~~~dl~tg~~~~l 483 (789)
|+.++|.+++. ...|.++|+.++++.+-
T Consensus 381 g~~~lyv~n~~-s~~VsVID~~t~kvv~t 408 (426)
T 3c75_H 381 AEPLLYALSAG-TQTLHIYDAATGEELRS 408 (426)
T ss_dssp SSCEEEEEETT-TTEEEEEETTTCCEEEE
T ss_pred CCEEEEEEcCC-CCeEEEEECCCCCEEEE
Confidence 99444554432 34688899999987654
|
| >1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus} SCOP: b.12.1.2 c.69.1.19 | Back alignment and structure |
|---|
Probab=98.65 E-value=2e-08 Score=109.80 Aligned_cols=111 Identities=12% Similarity=0.047 Sum_probs=76.3
Q ss_pred CCCcEEEEEcCCCCCCCchhhHH-HHHH-HHHCCcEEEEEcCCCCCCCCchhhccCCCCCC-cccHHHHHHHHHHHHHcC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSK-SLAF-LSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG-SQDVNDVLTAIDHVIDMG 666 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~-~~~~-la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~-~~~~~D~~~~i~~l~~~~ 666 (789)
...|+||++||...+. ...|.. .... ++..+|.|+++|++| +|.+..... ... ..-.+++.+.++++.++.
T Consensus 67 ~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g---~g~s~y~~~--~~~~~~v~~~la~ll~~L~~~~ 140 (449)
T 1hpl_A 67 TGRKTRFIIHGFIDKG-EESWLSTMCQNMFKVESVNCICVDWKS---GSRTAYSQA--SQNVRIVGAEVAYLVGVLQSSF 140 (449)
T ss_dssp TTSEEEEEECCCCCTT-CTTHHHHHHHHHHHHCCEEEEEEECHH---HHSSCHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCCCC-CccHHHHHHHHHHhcCCeEEEEEeCCc---ccCCccHHH--HHHHHHHHHHHHHHHHHHHHhc
Confidence 4568999999966542 235654 3344 456799999999997 332211000 000 011345666777776443
Q ss_pred CCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 667 LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
.++.+++.|+|||+||.+|..++.++|++++.+++..|..
T Consensus 141 g~~~~~v~LIGhSlGg~vA~~~a~~~p~~v~~iv~Ldpa~ 180 (449)
T 1hpl_A 141 DYSPSNVHIIGHSLGSHAAGEAGRRTNGAVGRITGLDPAE 180 (449)
T ss_dssp CCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCCcccEEEEEECHhHHHHHHHHHhcchhcceeeccCccc
Confidence 3577899999999999999999999999999999887753
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-06 Score=93.11 Aligned_cols=256 Identities=13% Similarity=0.039 Sum_probs=136.6
Q ss_pred EEEeCCCCCeEEEEecC------CCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 158 AVVPSPSGSKLLVVRNP------ENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 158 ~~~~SPdG~~la~~~~~------~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
.+++||||++|++.... +.....+..++ ..++..+.+.++...+ .. ....-.++.+||||++|+.....+
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~-~~-~g~~P~~ia~SpDGk~lyVan~~~- 145 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR-FS-VGPRVHIIGNCASSACLLFFLFGS- 145 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS-CC-BSCCTTSEEECTTSSCEEEEECSS-
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc-cc-cCCCcceEEEcCCCCEEEEEccCC-
Confidence 79999999998776421 01123466666 5667766666541100 00 000015899999999876653321
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEE--EEccCCceEeccCCCCCCccceEEEeeCCCC
Q 003886 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFV--ININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v--~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~ 308 (789)
...+.+ +|+.+ +..+. .++. +...|+|+.
T Consensus 146 -----------------------------------------~~~v~V~~iD~~t--v~~i~-v~~~-----~~~~p~g~~ 176 (368)
T 1mda_H 146 -----------------------------------------SAAAGLSVPGASD--DQLTK-SASC-----FHIHPGAAA 176 (368)
T ss_dssp -----------------------------------------SCEEEEEETTTEE--EEEEE-CSSC-----CCCEEEETT
T ss_pred -----------------------------------------CCeEEEEEEchhh--ceEEE-CCCc-----eEEccCCCe
Confidence 145666 77766 44442 2211 234688887
Q ss_pred CccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCC-----CCeee-cCCCCCccCcceecCC
Q 003886 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSED-----LPVVN-LTESISSAFFPRFSPD 382 (789)
Q Consensus 309 ~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~-Lt~~~~~~~~p~~SpD 382 (789)
.++.. .. ...+..+++ ++ ++... .+........|..+++
T Consensus 177 ----~~~~~-~~-------------dg~~~~vd~-----------------~~~~~~~~~v~~~~t~~i~vg~~P~~~~~ 221 (368)
T 1mda_H 177 ----THYLG-SC-------------PASLAASDL-----------------AAAPAAAGIVGAQCTGAQNCSSQAAQANY 221 (368)
T ss_dssp ----EEECC-CC-------------TTSCEEEEC-----------------CSSCCCCEECCCCSCTTSCBCSCCEEETT
T ss_pred ----EEEEE-cC-------------CCCEEEEEC-----------------ccccccCCeEEEEeeeeeeCCCCcccccc
Confidence 55432 22 124556676 22 22110 0000000123334889
Q ss_pred CCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCC-CCCccccccCCCCCccccCCCEEEEE
Q 003886 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEG-DCFPGLYSSSILSNPWLSDGCTMLLS 461 (789)
Q Consensus 383 G~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~-~~f~g~~~~~~~~~~ws~Dg~~l~~~ 461 (789)
++.++|.+. . .++++|+.++.... +..+..... ..-.+........+.+++||+++|+.
T Consensus 222 ~~~~~~vs~-~-----------~V~viD~~~~~~~v--------~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~ 281 (368)
T 1mda_H 222 PGMLVWAVA-S-----------SILQGDIPAAGATM--------KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL 281 (368)
T ss_dssp TTEEEECBS-S-----------CCEEEECCSSCCEE--------ECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred CCEEEEEcC-C-----------EEEEEECCCCcceE--------EEEEEeccccccccccccCcceeeEEcCCCCEEEEE
Confidence 999999885 3 48999986543211 000000000 00000000112235699999999887
Q ss_pred EEeC-C-----eEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEe-CCCCCCeEEEEeeccc
Q 003886 462 SIWG-S-----SQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS-SPVDVPQVKYGYFVDK 523 (789)
Q Consensus 462 ~~~~-~-----~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s-s~~~p~~i~~~~~~~~ 523 (789)
.... + ...+..+|+.++++..-.+.........+++||++++++.. ..+ .+.++|+.+.
T Consensus 282 ~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~---~VsVID~~t~ 347 (368)
T 1mda_H 282 TVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTE---VLDIYDAASD 347 (368)
T ss_dssp EEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTT---EEEEEESSSC
T ss_pred eccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCC---eEEEEECCCC
Confidence 6523 3 23455999999886654333322344688999998888776 343 3788887643
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.63 E-value=8.8e-06 Score=86.68 Aligned_cols=102 Identities=15% Similarity=0.046 Sum_probs=60.8
Q ss_pred cCcceecCCCCEEEEEecCCCCCCCCccc-cceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccc
Q 003886 374 AFFPRFSPDGKFLVFLSAKSSVDSGAHSA-TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 452 (789)
Q Consensus 374 ~~~p~~SpDG~~la~~s~~~~~~~g~~~~-~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws 452 (789)
.....++|||++|+....... .|.|.. .++++++|..+.+.... +++-. ....+.++
T Consensus 282 ~q~~a~~~~~~~lyV~~~~~~--~~~hk~~~~~V~viD~~t~kv~~~-------i~vg~-------------~~~~lavs 339 (386)
T 3sjl_D 282 WQQVAYHRALDRIYLLVDQRD--EWRHKTASRFVVVLDAKTGERLAK-------FEMGH-------------EIDSINVS 339 (386)
T ss_dssp SSCEEEETTTTEEEEEEEECC--TTCTTSCEEEEEEEETTTCCEEEE-------EEEEE-------------EECEEEEC
T ss_pred cceeeECCCCCeEEEEecccc--ccccCCCCCEEEEEECCCCeEEEE-------EECCC-------------CcceEEEC
Confidence 345778999998876654221 133333 36899999988665311 11100 12356789
Q ss_pred cCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeec
Q 003886 453 SDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLD 498 (789)
Q Consensus 453 ~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~d 498 (789)
+|++.++|.+++ +...|..+|..++++.+-....+......+++|
T Consensus 340 ~D~~~~ly~tn~-~~~~VsViD~~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 340 QDEKPLLYALST-GDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp SSSSCEEEEEET-TTTEEEEEETTTCCEEEEECCCCSSCCEEEECC
T ss_pred CCCCeEEEEEcC-CCCeEEEEECCCCcEEEEecCCCCCceeEECCc
Confidence 999855555443 345678899999988765554443333445544
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.2e-06 Score=95.03 Aligned_cols=272 Identities=8% Similarity=-0.008 Sum_probs=150.0
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCcc
Q 003886 160 VPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 237 (789)
Q Consensus 160 ~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~ 237 (789)
.++++|++|+..+..+ .+.+|+ .++....+. +..+.| ..+.|+||+ .|+..+.+.... .|+
T Consensus 127 ~~~~~~~~l~sgs~dg-----~i~vwd~~~~~~~~~~~---~h~~~V------~~l~~~~~~-~l~s~s~dg~i~--vwd 189 (464)
T 3v7d_B 127 CLQFEDNYVITGADDK-----MIRVYDSINKKFLLQLS---GHDGGV------WALKYAHGG-ILVSGSTDRTVR--VWD 189 (464)
T ss_dssp EEEEETTEEEEEETTS-----CEEEEETTTTEEEEEEC---CCSSCE------EEEEECSTT-EEEEEETTSCEE--EEE
T ss_pred EEEECCCEEEEEcCCC-----cEEEEECCCCcEEEEEe---CCCcCE------EEEEEcCCC-EEEEEeCCCCEE--EEE
Confidence 4555788888776554 456673 344333332 223333 789999999 677666655432 343
Q ss_pred CCCCCCCCCCcCCCCCCCcceee--CCcccccCCccCceEEEEEccCCceEeccCC--------------------CCCC
Q 003886 238 LGSTKGGSSDKDCNSWKGQGDWE--EDWGETYAGKRQPSLFVININSGEVQAVKGI--------------------PKSL 295 (789)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~--~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~--------------------~~~~ 295 (789)
............+........|. ++....+++..+..|.+||+.+++....... ....
T Consensus 190 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (464)
T 3v7d_B 190 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 269 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC
T ss_pred CCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc
Confidence 32222222222233333333444 3333345556678899999987753221000 0001
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccC
Q 003886 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAF 375 (789)
Q Consensus 296 ~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~ 375 (789)
...-..++|+++. |+..+ .+..|.++|+. .......+..+...+.
T Consensus 270 ~~~v~~~~~~~~~----l~~~~---------------~d~~i~vwd~~----------------~~~~~~~~~~~~~~v~ 314 (464)
T 3v7d_B 270 MASVRTVSGHGNI----VVSGS---------------YDNTLIVWDVA----------------QMKCLYILSGHTDRIY 314 (464)
T ss_dssp SSCEEEEEEETTE----EEEEE---------------TTSCEEEEETT----------------TTEEEEEECCCSSCEE
T ss_pred cceEEEEcCCCCE----EEEEe---------------CCCeEEEEECC----------------CCcEEEEecCCCCCEE
Confidence 1122345788876 65554 23468888982 2233455666677788
Q ss_pred cceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCC
Q 003886 376 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 455 (789)
Q Consensus 376 ~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg 455 (789)
...|+|||+.|+..+.+. .|++||+.++.......+.. ..+..+.|+ +
T Consensus 315 ~~~~~~~~~~l~sg~~dg-----------~i~vwd~~~~~~~~~~~~h~-------------------~~v~~~~~~--~ 362 (464)
T 3v7d_B 315 STIYDHERKRCISASMDT-----------TIRIWDLENGELMYTLQGHT-------------------ALVGLLRLS--D 362 (464)
T ss_dssp EEEEETTTTEEEEEETTS-----------CEEEEETTTTEEEEEECCCS-------------------SCEEEEEEC--S
T ss_pred EEEEcCCCCEEEEEeCCC-----------cEEEEECCCCcEEEEEeCCC-------------------CcEEEEEEc--C
Confidence 999999999988776543 59999987754321111100 112334554 4
Q ss_pred CEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 456 CTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 456 ~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
+ .++++..++... .+|+.+++...............++++++.++... + ..+.+.++.++
T Consensus 363 ~-~l~s~s~dg~v~--vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d----g~i~iwd~~~g 422 (464)
T 3v7d_B 363 K-FLVSAAADGSIR--GWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-E----NQFNIYNLRSG 422 (464)
T ss_dssp S-EEEEEETTSEEE--EEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-T----TEEEEEETTTC
T ss_pred C-EEEEEeCCCcEE--EEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-C----CeEEEEECCCC
Confidence 5 445666666544 45777776554443333345567888888665543 2 35777787654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-06 Score=90.31 Aligned_cols=252 Identities=8% Similarity=-0.040 Sum_probs=131.7
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 180 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (789)
-|.++|||+.+.|+... ...|+.++. + ++...+.... ......+++|||+.++ .... ...
T Consensus 49 gp~~~~~g~~l~~~d~~--------~~~i~~~~~--~-g~~~~~~~~~-----~~~~gl~~d~dG~l~v-~~~~---~~~ 108 (305)
T 3dr2_A 49 GPAWWEAQRTLVWSDLV--------GRRVLGWRE--D-GTVDVLLDAT-----AFTNGNAVDAQQRLVH-CEHG---RRA 108 (305)
T ss_dssp EEEEEGGGTEEEEEETT--------TTEEEEEET--T-SCEEEEEESC-----SCEEEEEECTTSCEEE-EETT---TTE
T ss_pred CCeEeCCCCEEEEEECC--------CCEEEEEeC--C-CCEEEEeCCC-----CccceeeECCCCCEEE-EECC---CCE
Confidence 45677999988776322 234666653 2 2233333222 3466789999998443 3222 224
Q ss_pred EEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceee
Q 003886 181 QFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (789)
Q Consensus 181 ~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (789)
++.+..+++...+.....+.. ......+.++|||+ |+++ ... +.... .+.
T Consensus 109 v~~~~~~g~~~~~~~~~~~~~-----~~~~~~i~~d~dG~-l~~t-d~~------~g~~~-----------------~~~ 158 (305)
T 3dr2_A 109 ITRSDADGQAHLLVGRYAGKR-----LNSPNDLIVARDGA-IWFT-DPP------FGLRK-----------------PSQ 158 (305)
T ss_dssp EEEECTTSCEEEEECEETTEE-----CSCCCCEEECTTSC-EEEE-CCS------GGGSC-----------------GGG
T ss_pred EEEECCCCCEEEEEeccCCCc-----cCCCCCEEECCCCC-EEEe-CcC------CCccc-----------------ccc
Confidence 666664465544443211110 00125789999997 4443 100 00000 000
Q ss_pred CCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEE
Q 003886 261 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (789)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (789)
.. ..........||++|.++|+++.+ . .-.....++|+|||+. |+++...... +....|+++
T Consensus 159 ~~--~~~~~~~~~~v~~~d~~~g~~~~~--~-~~~~p~gl~~spdg~~----lyv~~~~~~~---------~~~~~i~~~ 220 (305)
T 3dr2_A 159 GC--PADPELAHHSVYRLPPDGSPLQRM--A-DLDHPNGLAFSPDEQT----LYVSQTPEQG---------HGSVEITAF 220 (305)
T ss_dssp SC--CCCCSSSCEEEEEECSSSCCCEEE--E-EESSEEEEEECTTSSE----EEEEECCC------------CCCEEEEE
T ss_pred cc--ccccccCCCeEEEEcCCCCcEEEE--e-cCCCCcceEEcCCCCE----EEEEecCCcC---------CCCCEEEEE
Confidence 00 000001236799999988888777 3 2234567899999997 6655421100 012368888
Q ss_pred ecccccchhhhhhhhcCCCCCCCe---eec-CCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 341 RVSLYKSEASELELKESSSEDLPV---VNL-TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~---~~L-t~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
++. ++.. +.+ ....+.....++++||+ +|++... .|+++|.++ +.
T Consensus 221 ~~~-----------------~~~l~~~~~~~~~~~~~pdgi~~d~~G~--lwv~~~~-----------gv~~~~~~g-~~ 269 (305)
T 3dr2_A 221 AWR-----------------DGALHDRRHFASVPDGLPDGFCVDRGGW--LWSSSGT-----------GVCVFDSDG-QL 269 (305)
T ss_dssp EEE-----------------TTEEEEEEEEECCSSSCCCSEEECTTSC--EEECCSS-----------EEEEECTTS-CE
T ss_pred Eec-----------------CCCccCCeEEEECCCCCCCeEEECCCCC--EEEecCC-----------cEEEECCCC-CE
Confidence 872 1111 111 11234456788999998 3455321 388998643 21
Q ss_pred CCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003886 417 FSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 417 ~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
. ..+. .+. .+..++|++|++.|++++. ..||++++
T Consensus 270 ~-------~~~~---~~~----------~~~~~~f~~d~~~L~it~~----~~l~~~~~ 304 (305)
T 3dr2_A 270 L-------GHIP---TPG----------TASNCTFDQAQQRLFITGG----PCLWMLPL 304 (305)
T ss_dssp E-------EEEE---CSS----------CCCEEEECTTSCEEEEEET----TEEEEEEC
T ss_pred E-------EEEE---CCC----------ceeEEEEeCCCCEEEEEcC----CeEEEEEC
Confidence 1 0111 110 2346678899998887753 25787764
|
| >1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation; HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2 c.69.1.19 PDB: 2ppl_A | Back alignment and structure |
|---|
Probab=98.57 E-value=3.2e-08 Score=108.24 Aligned_cols=111 Identities=11% Similarity=0.094 Sum_probs=73.9
Q ss_pred CCCcEEEEEcCCCCCCCchhhHH-HHHHHHH-CCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSK-SLAFLSS-VGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~-~~~~la~-~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (789)
...|+||++||...+. ...|.. ....|.+ .+|.|+++|++|. |.+...... .....-.+++.+.++++.++..
T Consensus 68 ~~~p~vvliHG~~~s~-~~~w~~~l~~~ll~~~~~~VI~vD~~g~---g~s~y~~~~-~~~~~~a~~l~~ll~~L~~~~g 142 (450)
T 1rp1_A 68 TDKKTRFIIHGFIDKG-EENWLLDMCKNMFKVEEVNCICVDWKKG---SQTSYTQAA-NNVRVVGAQVAQMLSMLSANYS 142 (450)
T ss_dssp TTSEEEEEECCCCCTT-CTTHHHHHHHHHTTTCCEEEEEEECHHH---HSSCHHHHH-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEccCCCCC-CcchHHHHHHHHHhcCCeEEEEEeCccc---cCCcchHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 4579999999976542 224554 3444544 5899999999972 221100000 0000113466667777754323
Q ss_pred CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
++.+++.|+|||+||.+|..++.++|+ ++.+++..|..
T Consensus 143 ~~~~~v~LVGhSlGg~vA~~~a~~~p~-v~~iv~Ldpa~ 180 (450)
T 1rp1_A 143 YSPSQVQLIGHSLGAHVAGEAGSRTPG-LGRITGLDPVE 180 (450)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHHTSTT-CCEEEEESCCC
T ss_pred CChhhEEEEEECHhHHHHHHHHHhcCC-cccccccCccc
Confidence 577899999999999999999999998 99999887753
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.9e-05 Score=83.33 Aligned_cols=202 Identities=11% Similarity=-0.010 Sum_probs=97.4
Q ss_pred cCceEEEEEccCCceEeccCCCCC--CccceEEEeeCCCCCccEEEEEeecCCc--eeeeeeeec---cCCcceEEEecc
Q 003886 271 RQPSLFVININSGEVQAVKGIPKS--LSVGQVVWAPLNEGLHQYLVFVGWSSET--RKLGIKYCY---NRPCALYAVRVS 343 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~--~~~~~~~wSPDg~~~~~~l~f~~~~~~~--~~~g~~~~~---~~~~~l~~~d~~ 343 (789)
....|.++|.+++++..--..... ....++.|+||++. +++++...+ ...|+.... .....|..+|+
T Consensus 162 ~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~-----mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~- 235 (462)
T 2ece_A 162 GPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEV-----LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL- 235 (462)
T ss_dssp SCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTE-----EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET-
T ss_pred CCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCE-----EEEccCcCccccccccchhhhhhccCCEEEEEEC-
Confidence 457899999999987654111111 12336889999995 555532211 111211110 22457999998
Q ss_pred cccchhhhhhhhcCCCCCCC-eeecCCC-C-CccCcc--eecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCC
Q 003886 344 LYKSEASELELKESSSEDLP-VVNLTES-I-SSAFFP--RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 418 (789)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~-~~~Lt~~-~-~~~~~p--~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~ 418 (789)
.+++ ...+.-+ . ...... .|+|||++++....-+.. .-.++|+++..+.+...
T Consensus 236 ----------------~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~-----~Lss~V~v~~~d~g~~~- 293 (462)
T 2ece_A 236 ----------------RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLK-----DLSSSIWLWFYEDGKWN- 293 (462)
T ss_dssp ----------------TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETT-----TCCEEEEEEEEETTEEE-
T ss_pred ----------------CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeecc-----CCCceEEEEEecCCcee-
Confidence 3333 2233322 1 122233 459999976655540000 01235776665442211
Q ss_pred cccceeeEEeeeeccCCCCCcccc------ccCCCCCccccCCCEEEEEEEeCCeEEEEEEECC-CCcEE---EecCCC-
Q 003886 419 SLEKIVDVIPVVQCAEGDCFPGLY------SSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVS-SGELL---RITPAE- 487 (789)
Q Consensus 419 ~t~~~~~v~~~~~~~~~~~f~g~~------~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~-tg~~~---~lt~~~- 487 (789)
...++++-..+.....|.+- ......+.+|+||++||++....+. |..+|+. .++.+ .+..+.
T Consensus 294 ----~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~--VavfdV~d~~~~~lv~~I~tGG~ 367 (462)
T 2ece_A 294 ----AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGE--VRQYDISNPFKPVLTGKVKLGGI 367 (462)
T ss_dssp ----EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTE--EEEEECSSTTSCEEEEEEECBTT
T ss_pred ----EEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCE--EEEEEecCCCCcEEEEEEEeCCe
Confidence 11111111110000010000 0134577899999999877544454 4444542 33222 222210
Q ss_pred -------------CCceeEEeeecCCEEEEEE
Q 003886 488 -------------SNFSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 488 -------------~~~~~~~~s~dg~~l~~~~ 506 (789)
+......+++||++|+.+.
T Consensus 368 ~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 368 FHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 0123457899999887766
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.2e-05 Score=79.99 Aligned_cols=204 Identities=10% Similarity=0.115 Sum_probs=121.1
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-ceeEEEecC-CCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-QLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~-~~~~~~~~~-~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
....++|+|++++|+++... ...++.+...+ ....+.... ... .++.++|+++.|+++..
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~---~~~I~~~~~~g~~~~~~~~~~~~~p----------~~ia~d~~~~~lyv~d~----- 98 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDIS---EPSIGRASLHGGEPTTIIRQDLGSP----------EGIALDHLGRTIFWTDS----- 98 (267)
T ss_dssp EEEEEEEETTTTEEEEEETT---TTEEEEEESSSCCCEEEECTTCCCE----------EEEEEETTTTEEEEEET-----
T ss_pred cEEEEEEecCCCEEEEEECC---CCEEEEEecCCCCcEEEEECCCCCc----------cEEEEEecCCeEEEEEC-----
Confidence 45678999999998776543 33577777433 333333211 122 57889999888776532
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCcc
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~ 311 (789)
....|+++++++...+.+ .... .....++++|++..
T Consensus 99 --------------------------------------~~~~I~~~~~~g~~~~~~--~~~~~~~P~~i~vd~~~g~--- 135 (267)
T 1npe_A 99 --------------------------------------QLDRIEVAKMDGTQRRVL--FDTGLVNPRGIVTDPVRGN--- 135 (267)
T ss_dssp --------------------------------------TTTEEEEEETTSCSCEEE--ECSSCSSEEEEEEETTTTE---
T ss_pred --------------------------------------CCCEEEEEEcCCCCEEEE--EECCCCCccEEEEeeCCCE---
Confidence 225788888876655444 2222 35668899998876
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecC-CCCCccCcceecCCCCEEEEEe
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLS 390 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~la~~s 390 (789)
|+++.... ....|+++++ ++...+.+. .........+++|||+.|++..
T Consensus 136 -lyv~~~~~------------~~~~I~~~~~-----------------dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d 185 (267)
T 1npe_A 136 -LYWTDWNR------------DNPKIETSHM-----------------DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVD 185 (267)
T ss_dssp -EEEEECCS------------SSCEEEEEET-----------------TSCCCEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred -EEEEECCC------------CCcEEEEEec-----------------CCCCcEEEEECCCCCCcEEEEcCCCCEEEEEE
Confidence 66554210 1236888887 433333332 2233466789999999887776
Q ss_pred cCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEE
Q 003886 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (789)
Q Consensus 391 ~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (789)
... .+|+++|..+.... .+.. ....| .....|+..||++.. +...|
T Consensus 186 ~~~----------~~I~~~~~~g~~~~-------~~~~------~~~~P---------~gi~~d~~~lyva~~--~~~~v 231 (267)
T 1npe_A 186 AGT----------HRAECLNPAQPGRR-------KVLE------GLQYP---------FAVTSYGKNLYYTDW--KTNSV 231 (267)
T ss_dssp TTT----------TEEEEEETTEEEEE-------EEEE------CCCSE---------EEEEEETTEEEEEET--TTTEE
T ss_pred CCC----------CEEEEEecCCCceE-------EEec------CCCCc---------eEEEEeCCEEEEEEC--CCCeE
Confidence 432 47999998653211 1111 00111 123456777877532 23468
Q ss_pred EEEECCCCcEEEe
Q 003886 471 ISVNVSSGELLRI 483 (789)
Q Consensus 471 ~~~dl~tg~~~~l 483 (789)
+++|.++|+....
T Consensus 232 ~~~d~~~g~~~~~ 244 (267)
T 1npe_A 232 IAMDLAISKEMDT 244 (267)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEeCCCCCceEE
Confidence 8999988875543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=7.1e-06 Score=83.61 Aligned_cols=178 Identities=9% Similarity=-0.031 Sum_probs=104.9
Q ss_pred ceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
..|++++++++..+.+ .... .....++++|+++. |+++. .. ...|+++++
T Consensus 58 ~~I~~~~~~g~~~~~~--~~~~~~~p~~ia~d~~~~~----lyv~d-~~-------------~~~I~~~~~--------- 108 (267)
T 1npe_A 58 PSIGRASLHGGEPTTI--IRQDLGSPEGIALDHLGRT----IFWTD-SQ-------------LDRIEVAKM--------- 108 (267)
T ss_dssp TEEEEEESSSCCCEEE--ECTTCCCEEEEEEETTTTE----EEEEE-TT-------------TTEEEEEET---------
T ss_pred CEEEEEecCCCCcEEE--EECCCCCccEEEEEecCCe----EEEEE-CC-------------CCEEEEEEc---------
Confidence 6799999988766555 2222 35678899998876 65553 21 236888887
Q ss_pred hhhhcCCCCCCCeeecCC-CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeee
Q 003886 352 LELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (789)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~ 430 (789)
++...+.+.. ........+++|++..|++..... ...+|+++++++...+.+ ..
T Consensus 109 --------~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~--------~~~~I~~~~~dg~~~~~~-------~~-- 163 (267)
T 1npe_A 109 --------DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR--------DNPKIETSHMDGTNRRIL-------AQ-- 163 (267)
T ss_dssp --------TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS--------SSCEEEEEETTSCCCEEE-------EC--
T ss_pred --------CCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC--------CCcEEEEEecCCCCcEEE-------EE--
Confidence 4433333322 223456678999888887766331 124688888765332111 00
Q ss_pred eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCC
Q 003886 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPV 510 (789)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~ 510 (789)
. ... ....+++++|++.||++.. +...|+++|++++..+.+...... -..++.+++.++++....
T Consensus 164 -~--~~~-------~P~gia~d~~~~~lyv~d~--~~~~I~~~~~~g~~~~~~~~~~~~--P~gi~~d~~~lyva~~~~- 228 (267)
T 1npe_A 164 -D--NLG-------LPNGLTFDAFSSQLCWVDA--GTHRAECLNPAQPGRRKVLEGLQY--PFAVTSYGKNLYYTDWKT- 228 (267)
T ss_dssp -T--TCS-------CEEEEEEETTTTEEEEEET--TTTEEEEEETTEEEEEEEEECCCS--EEEEEEETTEEEEEETTT-
T ss_pred -C--CCC-------CCcEEEEcCCCCEEEEEEC--CCCEEEEEecCCCceEEEecCCCC--ceEEEEeCCEEEEEECCC-
Confidence 0 001 1235678999998988653 334788899876655554332221 124556777776655433
Q ss_pred CCCeEEEEeec
Q 003886 511 DVPQVKYGYFV 521 (789)
Q Consensus 511 ~p~~i~~~~~~ 521 (789)
..|++++..
T Consensus 229 --~~v~~~d~~ 237 (267)
T 1npe_A 229 --NSVIAMDLA 237 (267)
T ss_dssp --TEEEEEETT
T ss_pred --CeEEEEeCC
Confidence 247777654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.53 E-value=9.6e-06 Score=85.53 Aligned_cols=216 Identities=10% Similarity=0.035 Sum_probs=120.8
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
.....++|||| +| |+.+.. ...+..++ .+++..+.+.+.... +. ...-.++.+ ++++|+.+ ..
T Consensus 85 ~p~~i~~~~~g-~l-yv~~~~--~~~v~~iD~~t~~~~~~i~~g~~~-~~---~~~p~~i~~--~~~~lyv~-~~----- 148 (328)
T 3dsm_A 85 SPRYIHFLSDE-KA-YVTQIW--DYRIFIINPKTYEITGYIECPDMD-ME---SGSTEQMVQ--YGKYVYVN-CW----- 148 (328)
T ss_dssp SEEEEEEEETT-EE-EEEEBS--CSEEEEEETTTTEEEEEEECTTCC-TT---TCBCCCEEE--ETTEEEEE-EC-----
T ss_pred CCcEEEEeCCC-eE-EEEECC--CCeEEEEECCCCeEEEEEEcCCcc-cc---CCCcceEEE--ECCEEEEE-cC-----
Confidence 45677899998 55 555421 23577777 556655555543300 00 001145666 56665443 21
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (789)
+ ....|.++|++++++... ++.......+.++|||+ +
T Consensus 149 ------------------------------~------~~~~v~viD~~t~~~~~~--i~~g~~p~~i~~~~dG~-----l 185 (328)
T 3dsm_A 149 ------------------------------S------YQNRILKIDTETDKVVDE--LTIGIQPTSLVMDKYNK-----M 185 (328)
T ss_dssp ------------------------------T------TCCEEEEEETTTTEEEEE--EECSSCBCCCEECTTSE-----E
T ss_pred ------------------------------C------CCCEEEEEECCCCeEEEE--EEcCCCccceEEcCCCC-----E
Confidence 0 135799999999886554 23333456789999997 6
Q ss_pred EEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCee-ecCCC-CCccCcceecCCCCEEEEEec
Q 003886 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTES-ISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 314 ~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~Lt~~-~~~~~~p~~SpDG~~la~~s~ 391 (789)
+++++..... ..+ ......|+++|. ++++.. .+.-. .......+|||||++|++...
T Consensus 186 ~v~~~~~~~~---~~~-~~~~~~v~~id~-----------------~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 186 WTITDGGYEG---SPY-GYEAPSLYRIDA-----------------ETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp EEEBCCBCTT---CSS-CBCCCEEEEEET-----------------TTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred EEEECCCccC---Ccc-ccCCceEEEEEC-----------------CCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 6665322100 000 001247999997 555443 33222 224678899999998766432
Q ss_pred CCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe--CCeEE
Q 003886 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--GSSQV 469 (789)
Q Consensus 392 ~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~--~~~~~ 469 (789)
.++++|..++...... +.. . ... ....+.++|+++.||++... .....
T Consensus 245 -------------~v~~~d~~t~~~~~~~-----~~~---~--~~~-------~p~gi~vdp~~g~lyva~~~~y~~~~~ 294 (328)
T 3dsm_A 245 -------------DIWRMPVEADRVPVRP-----FLE---F--RDT-------KYYGLTVNPNNGEVYVADAIDYQQQGI 294 (328)
T ss_dssp -------------SEEEEETTCSSCCSSC-----SBC---C--CSS-------CEEEEEECTTTCCEEEEECTTSSSEEE
T ss_pred -------------EEEEEECCCCceeeee-----eec---C--CCC-------ceEEEEEcCCCCeEEEEcccccccCCE
Confidence 4899998876542100 000 0 001 12356788877778776421 34567
Q ss_pred EEEEECCCCcEE
Q 003886 470 IISVNVSSGELL 481 (789)
Q Consensus 470 l~~~dl~tg~~~ 481 (789)
|+++|.+ |++.
T Consensus 295 V~v~d~~-g~~~ 305 (328)
T 3dsm_A 295 VYRYSPQ-GKLI 305 (328)
T ss_dssp EEEECTT-CCEE
T ss_pred EEEECCC-CCEE
Confidence 8888887 5543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.7e-05 Score=84.75 Aligned_cols=215 Identities=11% Similarity=0.022 Sum_probs=121.3
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
.....++|+|+|+ |+++ +. ....+..++ .++....+....... . +.|+|||+.|+.....
T Consensus 131 ~~P~~la~d~~g~-lyv~-d~--~~~~I~~id~~~g~~~~~~~~~~~~----------~-ia~~~~g~~l~~~d~~---- 191 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAY-QR--DDPRVRLISVDDNKVTTVHPGFKGG----------K-PAVTKDKQRVYSIGWE---- 191 (409)
T ss_dssp CCEEEEEECSTTE-EEEE-ET--TTTEEEEEETTTTEEEEEEETCCBC----------B-CEECTTSSEEEEEBSS----
T ss_pred CCceEEEEeCCCC-EEEE-ec--CCCcEEEEECCCCEEEEeeccCCCC----------c-eeEecCCCcEEEEecC----
Confidence 4566788999997 5444 33 223577676 445555544432222 3 8999999977665321
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceE-eccC-CC-CCCccceEEEeeCCCCC
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVKG-IP-KSLSVGQVVWAPLNEGL 309 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~-~l~~-~~-~~~~~~~~~wSPDg~~~ 309 (789)
....|++++..++... .+.. .. .......++++|++..
T Consensus 192 --------------------------------------~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~- 232 (409)
T 3hrp_A 192 --------------------------------------GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW- 232 (409)
T ss_dssp --------------------------------------TTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE-
T ss_pred --------------------------------------CCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe-
Confidence 1137899998876542 2200 12 2335667899996665
Q ss_pred ccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeec----CCC-CCcc-C-cceecCC
Q 003886 310 HQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL----TES-ISSA-F-FPRFSPD 382 (789)
Q Consensus 310 ~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L----t~~-~~~~-~-~p~~SpD 382 (789)
|++ +.. ...|+++|+ +++....+ ... .+.. . ..+|+|+
T Consensus 233 ---lyv-~d~--------------~~~I~~~d~-----------------~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~ 277 (409)
T 3hrp_A 233 ---LYF-VDS--------------NKNFGRFNV-----------------KTQEVTLIKQLELSGSLGTNPGPYLIYYFV 277 (409)
T ss_dssp ---EEE-ECT--------------TCEEEEEET-----------------TTCCEEEEEECCCCSCCCCSSCCEEEEETT
T ss_pred ---EEE-EEC--------------CCcEEEEEC-----------------CCCCEEEEecccccCCCCCCccccEEEeCC
Confidence 666 421 226999997 44444433 221 2222 3 7899998
Q ss_pred CCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeecc-CCCCCcc--c--cccCCCCCccccCCCE
Q 003886 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA-EGDCFPG--L--YSSSILSNPWLSDGCT 457 (789)
Q Consensus 383 G~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~-~~~~f~g--~--~~~~~~~~~ws~Dg~~ 457 (789)
+..|++.... ..+|++++.++. ...+ .... ......| . -......+++++||+
T Consensus 278 ~g~lyv~d~~----------~~~I~~~~~~g~-~~~~----------~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~- 335 (409)
T 3hrp_A 278 DSNFYMSDQN----------LSSVYKITPDGE-CEWF----------CGSATQKTVQDGLREEALFAQPNGMTVDEDGN- 335 (409)
T ss_dssp TTEEEEEETT----------TTEEEEECTTCC-EEEE----------EECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-
T ss_pred CCEEEEEeCC----------CCEEEEEecCCC-EEEE----------EeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-
Confidence 7777665432 246999987653 1100 0000 0000000 0 001234678899998
Q ss_pred EEEEEEeC-CeEEEEEEECCCCcEEEecC
Q 003886 458 MLLSSIWG-SSQVIISVNVSSGELLRITP 485 (789)
Q Consensus 458 l~~~~~~~-~~~~l~~~dl~tg~~~~lt~ 485 (789)
||++- . +...|.++++.+|++..+..
T Consensus 336 lyvad--~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 336 FYIVD--GFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp EEEEE--TTTTCEEEEEETTTTEEEEEEE
T ss_pred EEEEe--CCCCCEEEEEECCCCEEEEEeC
Confidence 76653 3 45578889977888877654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.51 E-value=8.4e-06 Score=85.97 Aligned_cols=240 Identities=15% Similarity=0.007 Sum_probs=131.2
Q ss_pred CCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCC
Q 003886 164 SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK 242 (789)
Q Consensus 164 dG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~ 242 (789)
++++|+.+.... ..+..++ .+++..+.+...... ..+.++||| +| |++..
T Consensus 52 ~~~~lyv~~~~~---~~v~viD~~t~~~~~~i~~~~~p----------~~i~~~~~g-~l-yv~~~-------------- 102 (328)
T 3dsm_A 52 RDGIGWIVVNNS---HVIFAIDINTFKEVGRITGFTSP----------RYIHFLSDE-KA-YVTQI-------------- 102 (328)
T ss_dssp ETTEEEEEEGGG---TEEEEEETTTCCEEEEEECCSSE----------EEEEEEETT-EE-EEEEB--------------
T ss_pred ECCEEEEEEcCC---CEEEEEECcccEEEEEcCCCCCC----------cEEEEeCCC-eE-EEEEC--------------
Confidence 567776665432 2466666 556655544322223 578899998 54 54431
Q ss_pred CCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC----CccceEEEeeCCCCCccEEEEEee
Q 003886 243 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS----LSVGQVVWAPLNEGLHQYLVFVGW 318 (789)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~----~~~~~~~wSPDg~~~~~~l~f~~~ 318 (789)
....|+++|++++++......... .....+++ +++. |+ ++.
T Consensus 103 ----------------------------~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~----ly-v~~ 147 (328)
T 3dsm_A 103 ----------------------------WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKY----VY-VNC 147 (328)
T ss_dssp ----------------------------SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTE----EE-EEE
T ss_pred ----------------------------CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCE----EE-EEc
Confidence 125799999999887543101110 13456666 5554 44 442
Q ss_pred cCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCee-ecCCCCCccCcceecCCCCEEEEEecCCCCCC
Q 003886 319 SSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLSAKSSVDS 397 (789)
Q Consensus 319 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~ 397 (789)
.. ....|+++|+ ++++.. .+.. ........++|||+ +++.........
T Consensus 148 ~~------------~~~~v~viD~-----------------~t~~~~~~i~~-g~~p~~i~~~~dG~-l~v~~~~~~~~~ 196 (328)
T 3dsm_A 148 WS------------YQNRILKIDT-----------------ETDKVVDELTI-GIQPTSLVMDKYNK-MWTITDGGYEGS 196 (328)
T ss_dssp CT------------TCCEEEEEET-----------------TTTEEEEEEEC-SSCBCCCEECTTSE-EEEEBCCBCTTC
T ss_pred CC------------CCCEEEEEEC-----------------CCCeEEEEEEc-CCCccceEEcCCCC-EEEEECCCccCC
Confidence 11 1236999998 555433 3332 23456789999998 545543320000
Q ss_pred CCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCC
Q 003886 398 GAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 477 (789)
Q Consensus 398 g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~t 477 (789)
........|+++|..+++.. ..+..+.. .....++++||+++||+... .++++|+.+
T Consensus 197 ~~~~~~~~v~~id~~t~~v~----------~~~~~~~g--------~~p~~la~~~d~~~lyv~~~-----~v~~~d~~t 253 (328)
T 3dsm_A 197 PYGYEAPSLYRIDAETFTVE----------KQFKFKLG--------DWPSEVQLNGTRDTLYWINN-----DIWRMPVEA 253 (328)
T ss_dssp SSCBCCCEEEEEETTTTEEE----------EEEECCTT--------CCCEEEEECTTSCEEEEESS-----SEEEEETTC
T ss_pred ccccCCceEEEEECCCCeEE----------EEEecCCC--------CCceeEEEecCCCEEEEEcc-----EEEEEECCC
Confidence 00001257999998765431 11111100 01346789999998887632 789999998
Q ss_pred CcEEE--ecCC-CCCceeEEeeecCCEEEEEE-eCCCCCCeEEEEeec
Q 003886 478 GELLR--ITPA-ESNFSWSLLTLDGDNIIAVS-SSPVDVPQVKYGYFV 521 (789)
Q Consensus 478 g~~~~--lt~~-~~~~~~~~~s~dg~~l~~~~-ss~~~p~~i~~~~~~ 521 (789)
+++.. +... ........++++++.++.+. .+......|++++..
T Consensus 254 ~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 254 DRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp SSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred CceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 88632 1111 12233346777677766664 222334557777754
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=4.9e-06 Score=87.73 Aligned_cols=233 Identities=10% Similarity=0.062 Sum_probs=126.0
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 180 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (789)
.|.++||++.+.++... ...|+.++. .+++...++. + ..+..++|+|||+.++.. .. .
T Consensus 53 gp~~~~~~~~l~~~d~~--------~~~i~~~d~--~~~~~~~~~~-~-----~~v~~i~~~~dg~l~v~~-~~-----g 110 (326)
T 2ghs_A 53 GPTFDPASGTAWWFNIL--------ERELHELHL--ASGRKTVHAL-P-----FMGSALAKISDSKQLIAS-DD-----G 110 (326)
T ss_dssp EEEEETTTTEEEEEEGG--------GTEEEEEET--TTTEEEEEEC-S-----SCEEEEEEEETTEEEEEE-TT-----E
T ss_pred CCeEeCCCCEEEEEECC--------CCEEEEEEC--CCCcEEEEEC-C-----CcceEEEEeCCCeEEEEE-CC-----C
Confidence 34567888777665322 236777765 2333322221 1 346778899999876643 21 3
Q ss_pred EEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCccee
Q 003886 181 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (789)
Q Consensus 181 ~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (789)
++.++ .+++...+........ ...+..+.++|||+ |++.......
T Consensus 111 l~~~d~~~g~~~~~~~~~~~~~-----~~~~~~i~~d~~G~-l~v~~~~~~~---------------------------- 156 (326)
T 2ghs_A 111 LFLRDTATGVLTLHAELESDLP-----GNRSNDGRMHPSGA-LWIGTMGRKA---------------------------- 156 (326)
T ss_dssp EEEEETTTCCEEEEECSSTTCT-----TEEEEEEEECTTSC-EEEEEEETTC----------------------------
T ss_pred EEEEECCCCcEEEEeeCCCCCC-----CCCCCCEEECCCCC-EEEEeCCCcC----------------------------
Confidence 77777 4666555544321110 11236789999998 4444322100
Q ss_pred eCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEE
Q 003886 260 EEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYA 339 (789)
Q Consensus 260 ~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~ 339 (789)
......||+++ +|+.+.+ .........++|+|||+. |++... ....|++
T Consensus 157 ---------~~~~~~l~~~~--~g~~~~~--~~~~~~~~~i~~s~dg~~----lyv~~~--------------~~~~I~~ 205 (326)
T 2ghs_A 157 ---------ETGAGSIYHVA--KGKVTKL--FADISIPNSICFSPDGTT----GYFVDT--------------KVNRLMR 205 (326)
T ss_dssp ---------CTTCEEEEEEE--TTEEEEE--EEEESSEEEEEECTTSCE----EEEEET--------------TTCEEEE
T ss_pred ---------CCCceEEEEEe--CCcEEEe--eCCCcccCCeEEcCCCCE----EEEEEC--------------CCCEEEE
Confidence 00235789998 5776655 222223457899999997 776542 1236888
Q ss_pred EecccccchhhhhhhhcCCCCCC-C------eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecC
Q 003886 340 VRVSLYKSEASELELKESSSEDL-P------VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 412 (789)
Q Consensus 340 ~d~~~~~~~~~~~~~~~~~~~~~-~------~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~ 412 (789)
+++.. +++ . ...+....+......+++||+. |++... ...|+++|..
T Consensus 206 ~d~~~---------------~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~l--wva~~~---------~~~v~~~d~~ 259 (326)
T 2ghs_A 206 VPLDA---------------RTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHI--WNARWG---------EGAVDRYDTD 259 (326)
T ss_dssp EEBCT---------------TTCCBSSCCEEEEECTTSSSEEEEEEECTTSCE--EEEEET---------TTEEEEECTT
T ss_pred EEccc---------------ccCCcccCceEEEECCCCCCCCCeeEECCCCCE--EEEEeC---------CCEEEEECCC
Confidence 88720 122 1 1122222334456788899973 333211 1358999873
Q ss_pred CCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccc-cCCCEEEEEEEeCC
Q 003886 413 TNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWGS 466 (789)
Q Consensus 413 ~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws-~Dg~~l~~~~~~~~ 466 (789)
++.. ..+. .+. ..+..++|+ +|++.||+++...+
T Consensus 260 -g~~~-------~~i~---~~~---------~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 260 -GNHI-------ARYE---VPG---------KQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp -CCEE-------EEEE---CSC---------SBEEEEEEESTTSCEEEEEEBCTT
T ss_pred -CCEE-------EEEE---CCC---------CCcEEEEEecCCCCEEEEEecCCC
Confidence 2221 0010 000 012356787 88888888765543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.2e-05 Score=82.98 Aligned_cols=72 Identities=15% Similarity=0.074 Sum_probs=40.3
Q ss_pred ccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeec------cCCCCCccccccCC
Q 003886 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC------AEGDCFPGLYSSSI 446 (789)
Q Consensus 373 ~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~------~~~~~f~g~~~~~~ 446 (789)
......+|||||+| |++++. .+.|.++|+...+...+. ..+++-.. +.+...+ ...
T Consensus 322 ~pa~I~lS~DGrfL-YVSnrg---------~d~VavfdV~d~~~~~lv----~~I~tGG~~~~~~~~~G~~~~----ggP 383 (462)
T 2ece_A 322 LVTDIDISLDDKFL-YLSLWG---------IGEVRQYDISNPFKPVLT----GKVKLGGIFHRADHPAGHKLT----GAP 383 (462)
T ss_dssp CCCCEEECTTSCEE-EEEETT---------TTEEEEEECSSTTSCEEE----EEEECBTTTTCBCCTTSCCCC----SCC
T ss_pred ceeEEEECCCCCEE-EEEeCC---------CCEEEEEEecCCCCcEEE----EEEEeCCeeccccccccccCC----CCC
Confidence 46788999999986 556553 357999998533221111 11111100 0000011 123
Q ss_pred CCCccccCCCEEEEEE
Q 003886 447 LSNPWLSDGCTMLLSS 462 (789)
Q Consensus 447 ~~~~ws~Dg~~l~~~~ 462 (789)
..+.++|||++||++.
T Consensus 384 r~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 384 QMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCEEECTTSSEEEEEC
T ss_pred CEEEEcCCCCEEEEEc
Confidence 5678999999998876
|
| >2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} SCOP: c.69.1.39 | Back alignment and structure |
|---|
Probab=98.47 E-value=3.3e-07 Score=82.45 Aligned_cols=82 Identities=17% Similarity=0.263 Sum_probs=56.4
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.|.||++| +. ...|... |+ ++|.|+++|+|| +|.+..... . ++++.+.+..+++. ++.+
T Consensus 22 ~~~vv~~H-~~----~~~~~~~---l~-~~~~v~~~d~~G---~G~s~~~~~------~-~~~~~~~~~~~~~~--~~~~ 80 (131)
T 2dst_A 22 GPPVLLVA-EE----ASRWPEA---LP-EGYAFYLLDLPG---YGRTEGPRM------A-PEELAHFVAGFAVM--MNLG 80 (131)
T ss_dssp SSEEEEES-SS----GGGCCSC---CC-TTSEEEEECCTT---STTCCCCCC------C-HHHHHHHHHHHHHH--TTCC
T ss_pred CCeEEEEc-CC----HHHHHHH---Hh-CCcEEEEECCCC---CCCCCCCCC------C-HHHHHHHHHHHHHH--cCCC
Confidence 47899999 21 2233322 44 459999999998 454432111 1 56666666666655 3557
Q ss_pred cEEEEEcCccHHHHHHHHHhCCC
Q 003886 672 KVTVVGGSHGGFLTTHLIGQAPD 694 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~p~ 694 (789)
++.++|||+||.+++.++.++|.
T Consensus 81 ~~~lvG~S~Gg~~a~~~a~~~p~ 103 (131)
T 2dst_A 81 APWVLLRGLGLALGPHLEALGLR 103 (131)
T ss_dssp SCEEEECGGGGGGHHHHHHTTCC
T ss_pred ccEEEEEChHHHHHHHHHhcCCc
Confidence 89999999999999999999885
|
| >1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A {Bacillus subtilis} SCOP: c.69.1.22 | Back alignment and structure |
|---|
Probab=98.47 E-value=7.1e-07 Score=88.84 Aligned_cols=90 Identities=13% Similarity=0.069 Sum_probs=65.0
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.|.|+++||.+++ ...|......|.. |.|+.+|++| ++. ..+|+.+.++.+. ...
T Consensus 17 ~~~l~~~hg~~~~--~~~~~~~~~~l~~--~~v~~~d~~g---~~~-------------~~~~~~~~i~~~~-----~~~ 71 (230)
T 1jmk_C 17 EQIIFAFPPVLGY--GLMYQNLSSRLPS--YKLCAFDFIE---EED-------------RLDRYADLIQKLQ-----PEG 71 (230)
T ss_dssp SEEEEEECCTTCC--GGGGHHHHHHCTT--EEEEEECCCC---STT-------------HHHHHHHHHHHHC-----CSS
T ss_pred CCCEEEECCCCCc--hHHHHHHHHhcCC--CeEEEecCCC---HHH-------------HHHHHHHHHHHhC-----CCC
Confidence 4779999997664 4567666677754 9999999986 332 1345555555431 135
Q ss_pred cEEEEEcCccHHHHHHHHHhC---CCceeEEEEeCCcc
Q 003886 672 KVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLC 706 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~---p~~~~a~v~~~pv~ 706 (789)
++.++|||+||.++..++.+. +++++++|+.++..
T Consensus 72 ~~~l~G~S~Gg~ia~~~a~~~~~~~~~v~~lvl~~~~~ 109 (230)
T 1jmk_C 72 PLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDSYK 109 (230)
T ss_dssp CEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCE
T ss_pred CeEEEEECHhHHHHHHHHHHHHHcCCCccEEEEECCCC
Confidence 799999999999999988764 36788888887654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1e-05 Score=88.97 Aligned_cols=168 Identities=12% Similarity=0.120 Sum_probs=97.7
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CC--------ceeEEEecCCCccccccCCCcccceeecCC-CCEEE
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWS--QS--------QLEKEFHVPQTVHGSVYADGWFEGISWNSD-ETLIA 223 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~--------~~~~~~~~~~~~~g~v~~d~~~~~~~wSpD-g~~la 223 (789)
.+...+|||||++||...... +......+|+ .+ +.........+..+.| ..++|+|+ ++.|+
T Consensus 94 ~v~~l~~spdg~~lav~~~sg-s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V------~~v~~~p~~~~~la 166 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSS-EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMV------IDMKWNPTVPSMVA 166 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEET-TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSE------EEEEECSSCTTEEE
T ss_pred cccEEEEcCCCCEEEEEEecc-CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCce------EEEEECCCCCCEEE
Confidence 478899999999998642111 1112455562 11 1111122222222233 78999998 66666
Q ss_pred EEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEe
Q 003886 224 YVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWA 303 (789)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wS 303 (789)
..+.+ ..|.+||+.++...... ......+..++|+
T Consensus 167 s~s~D--------------------------------------------g~v~iwD~~~~~~~~~~-~~~~~~v~~v~ws 201 (434)
T 2oit_A 167 VCLAD--------------------------------------------GSIAVLQVTETVKVCAT-LPSTVAVTSVCWS 201 (434)
T ss_dssp EEETT--------------------------------------------SCEEEEEESSSEEEEEE-ECGGGCEEEEEEC
T ss_pred EEECC--------------------------------------------CeEEEEEcCCCcceeec-cCCCCceeEEEEc
Confidence 65432 56899999887543221 1223467789999
Q ss_pred eCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC-------CCccCc
Q 003886 304 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES-------ISSAFF 376 (789)
Q Consensus 304 PDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~-------~~~~~~ 376 (789)
|||+. |+..+ .+..|.++|+ .+.....+..+ ...+..
T Consensus 202 pdg~~----lasgs---------------~dg~v~iwd~-----------------~~~~~~~~~~~~~~~~~~~~~v~~ 245 (434)
T 2oit_A 202 PKGKQ----LAVGK---------------QNGTVVQYLP-----------------TLQEKKVIPCPPFYESDHPVRVLD 245 (434)
T ss_dssp TTSSC----EEEEE---------------TTSCEEEECT-----------------TCCEEEEECCCTTCCTTSCEEEEE
T ss_pred CCCCE----EEEEc---------------CCCcEEEEcc-----------------CCcccccccCCcccCCCCceeEEE
Confidence 99998 87665 2236888887 32222222211 225678
Q ss_pred ceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 377 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 377 p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
..|++++..++..+..+ |.......++++++...
T Consensus 246 v~w~~~~~~l~~~~~~d----g~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 246 VLWIGTYVFAIVYAAAD----GTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEETTEEEEEEEETT----CCSSSCCEEEEEECCCT
T ss_pred EEEecCceEEEEEccCC----CccCCCCceEEEEeccC
Confidence 89999998876555443 11112345888888754
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.45 E-value=5.7e-06 Score=85.91 Aligned_cols=238 Identities=10% Similarity=0.014 Sum_probs=126.3
Q ss_pred ecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003886 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (789)
Q Consensus 102 ~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (789)
|.++|++..+.++... ...|+.++.. ++....+.. + ..+...+++|||+ |++... ..+
T Consensus 18 p~w~~~~~~l~~~d~~--------~~~i~~~d~~--~~~~~~~~~-~-----~~~~~i~~~~dG~-l~v~~~-----~~l 75 (297)
T 3g4e_A 18 PVWEEVSNSLLFVDIP--------AKKVCRWDSF--TKQVQRVTM-D-----APVSSVALRQSGG-YVATIG-----TKF 75 (297)
T ss_dssp EEEETTTTEEEEEETT--------TTEEEEEETT--TCCEEEEEC-S-----SCEEEEEEBTTSS-EEEEET-----TEE
T ss_pred CeEECCCCEEEEEECC--------CCEEEEEECC--CCcEEEEeC-C-----CceEEEEECCCCC-EEEEEC-----CeE
Confidence 4456777777665322 2356776642 222222211 1 3467889999999 333322 257
Q ss_pred EEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceee
Q 003886 182 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (789)
Q Consensus 182 ~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (789)
+.++ .+++.+.+........ ......+.++|||+ |++.........
T Consensus 76 ~~~d~~~g~~~~~~~~~~~~~-----~~~~~di~~d~dG~-l~~~~~~~~~~~--------------------------- 122 (297)
T 3g4e_A 76 CALNWKEQSAVVLATVDNDKK-----NNRFNDGKVDPAGR-YFAGTMAEETAP--------------------------- 122 (297)
T ss_dssp EEEETTTTEEEEEEECCTTCS-----SEEEEEEEECTTSC-EEEEEEECCSBT---------------------------
T ss_pred EEEECCCCcEEEEEecCCCCC-----CCCCCCEEECCCCC-EEEecCCccccc---------------------------
Confidence 7777 4566555554322111 01236789999998 555433211000
Q ss_pred CCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEE
Q 003886 261 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (789)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (789)
.........||.++.+ ++...+ ...-.....++|+|||+. |+++.. ....|+++
T Consensus 123 -----~~~~~~~~~l~~~d~~-g~~~~~--~~~~~~pngi~~spdg~~----lyv~~~--------------~~~~i~~~ 176 (297)
T 3g4e_A 123 -----AVLERHQGALYSLFPD-HHVKKY--FDQVDISNGLDWSLDHKI----FYYIDS--------------LSYSVDAF 176 (297)
T ss_dssp -----TBCCTTCEEEEEECTT-SCEEEE--EEEESBEEEEEECTTSCE----EEEEEG--------------GGTEEEEE
T ss_pred -----ccccCCCcEEEEEECC-CCEEEE--eeccccccceEEcCCCCE----EEEecC--------------CCCcEEEE
Confidence 0000123578888875 444444 122224567899999997 665541 12257777
Q ss_pred ecccccchhhhhhhhcCCCCCCCe---e---ecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 341 RVSLYKSEASELELKESSSEDLPV---V---NLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~---~---~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
+++. .++.. + .+....+.....++++||+ |+ ++... ...|+++|.+++
T Consensus 177 ~~d~---------------~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lw-va~~~---------~~~v~~~d~~tG 230 (297)
T 3g4e_A 177 DYDL---------------QTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LW-VACYN---------GGRVIRLDPVTG 230 (297)
T ss_dssp EECT---------------TTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EE-EEEET---------TTEEEEECTTTC
T ss_pred eccC---------------CCCcccCcEEEEECCCCCCCCCeeEECCCCC-EE-EEEcC---------CCEEEEEcCCCc
Confidence 7620 22322 1 1222233456678999996 43 33221 236999998765
Q ss_pred CCCCcccceeeEEeeeeccCCCCCccccccCCCCCccc-cCCCEEEEEEEeC
Q 003886 415 GNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL-SDGCTMLLSSIWG 465 (789)
Q Consensus 415 ~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws-~Dg~~l~~~~~~~ 465 (789)
+... .+. .+. ..+..++|. ||+++||+++...
T Consensus 231 ~~~~-------~i~---~p~---------~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 231 KRLQ-------TVK---LPV---------DKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp CEEE-------EEE---CSS---------SBEEEEEEESGGGCEEEEEEBCT
T ss_pred eEEE-------EEE---CCC---------CCceEEEEeCCCCCEEEEEcCCc
Confidence 4321 111 110 012356787 8999998887654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.2e-05 Score=83.51 Aligned_cols=166 Identities=11% Similarity=0.057 Sum_probs=84.9
Q ss_pred cEEEEeCC---CCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 156 ASAVVPSP---SGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 156 ~~~~~~SP---dG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
+...+||| ||+.||-.+.++ .+.+| .+|+..+.+......... ....+|||||+.++..+.+..
T Consensus 181 v~~l~fs~~~g~~~~LaSgS~D~-----TIkIWDl~TGk~l~tL~g~~~~v~~------v~~vafSpdG~~lvs~s~~~~ 249 (356)
T 2w18_A 181 ETILTFAEVQGMQEALLGTTIMN-----NIVIWNLKTGQLLKKMHIDDSYQAS------VCHKAYSEMGLLFIVLSHPCA 249 (356)
T ss_dssp SCEEEEEEEETSTTEEEEEETTS-----EEEEEETTTCCEEEEEECCC---CC------CEEEEEEETTEEEEEEC----
T ss_pred eeeEEeeccCCCCceEEEecCCC-----cEEEEECCCCcEEEEEcCCCcceee------eEEEEECCCCCEEEEeccCCC
Confidence 44455555 445555444433 67788 456655555421110001 135689999998887654321
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEecc--CCCCCCccceEEEeeCCCC
Q 003886 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~--~~~~~~~~~~~~wSPDg~~ 308 (789)
. | ...++..+..|.+||+.+|+...+. ..+..........+.+|..
T Consensus 250 ~----w----------------------------~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~ 297 (356)
T 2w18_A 250 K----E----------------------------SESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHC 297 (356)
T ss_dssp ----------------------------------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTE
T ss_pred c----c----------------------------eeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCE
Confidence 0 0 0112335678899999998764331 0010100011112222333
Q ss_pred CccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCccC-cceecCCCCEE
Q 003886 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAF-FPRFSPDGKFL 386 (789)
Q Consensus 309 ~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~-~p~~SpDG~~l 386 (789)
++-.+ .+..|.++|+ .+++ ...|+.+..... ..+|||||++|
T Consensus 298 ----lASgS---------------~DgTIkIWDl-----------------~tGk~l~tL~gH~~~vvs~vafSPDG~~L 341 (356)
T 2w18_A 298 ----AAAIL---------------TSGTIAIWDL-----------------LLGQCTALLPPVSDQHWSFVKWSGTDSHL 341 (356)
T ss_dssp ----EEEEE---------------TTSCEEEEET-----------------TTCSEEEEECCC--CCCCEEEECSSSSEE
T ss_pred ----EEEEc---------------CCCcEEEEEC-----------------CCCcEEEEecCCCCCeEEEEEECCCCCEE
Confidence 33322 2336888998 5555 456766654444 47999999999
Q ss_pred EEEecCCCCCCCCccccceeEEeec
Q 003886 387 VFLSAKSSVDSGAHSATDSLHRIDW 411 (789)
Q Consensus 387 a~~s~~~~~~~g~~~~~~~L~~~d~ 411 (789)
+..+.+. .|++||.
T Consensus 342 aSGS~D~-----------TIklWd~ 355 (356)
T 2w18_A 342 LAGQKDG-----------NIFVYHY 355 (356)
T ss_dssp EEECTTS-----------CEEEEEE
T ss_pred EEEECCC-----------cEEEecC
Confidence 8776543 4788874
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.39 E-value=4e-05 Score=84.31 Aligned_cols=296 Identities=10% Similarity=-0.006 Sum_probs=150.4
Q ss_pred ceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccc
Q 003886 125 RKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHG 202 (789)
Q Consensus 125 ~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g 202 (789)
..+.+.++++.+ +.....+.... +.+....|+ ++.|+..+..+ .+.+| ..++....+. ...+
T Consensus 137 ~dg~i~vwd~~~-~~~~~~~~~h~-----~~v~~~~~~--~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~---~h~~ 200 (445)
T 2ovr_B 137 DDNTLKVWSAVT-GKCLRTLVGHT-----GGVWSSQMR--DNIIISGSTDR-----TLKVWNAETGECIHTLY---GHTS 200 (445)
T ss_dssp TTSCEEEEETTT-CCEEEECCCCS-----SCEEEEEEE--TTEEEEEETTS-----CEEEEETTTTEEEEEEC---CCSS
T ss_pred CCCcEEEEECCC-CcEEEEEcCCC-----CCEEEEEec--CCEEEEEeCCC-----eEEEEECCcCcEEEEEC---CCCC
Confidence 445666776532 22222232222 457777887 56777665543 35566 3444333332 1112
Q ss_pred cccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccC
Q 003886 203 SVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS 282 (789)
Q Consensus 203 ~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~ 282 (789)
.| ..+.|+ ++.|+..+.+.... .|+............+........| +....+++..+..|.+||+.+
T Consensus 201 ~v------~~~~~~--~~~l~s~s~dg~i~--~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~ 268 (445)
T 2ovr_B 201 TV------RCMHLH--EKRVVSGSRDATLR--VWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET 268 (445)
T ss_dssp CE------EEEEEE--TTEEEEEETTSEEE--EEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG
T ss_pred cE------EEEEec--CCEEEEEeCCCEEE--EEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC
Confidence 22 566664 56677766554322 2332211111111122222222233 323344555678899999998
Q ss_pred CceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC
Q 003886 283 GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL 362 (789)
Q Consensus 283 g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 362 (789)
++..... ......+..+.| |++. |+..+ .+..|.++|+ .++
T Consensus 269 ~~~~~~~-~~~~~~v~~~~~--~~~~----l~~~~---------------~d~~i~i~d~-----------------~~~ 309 (445)
T 2ovr_B 269 ETCLHTL-QGHTNRVYSLQF--DGIH----VVSGS---------------LDTSIRVWDV-----------------ETG 309 (445)
T ss_dssp TEEEEEE-CCCSSCEEEEEE--CSSE----EEEEE---------------TTSCEEEEET-----------------TTC
T ss_pred CcEeEEe-cCCCCceEEEEE--CCCE----EEEEe---------------CCCeEEEEEC-----------------CCC
Confidence 8755431 122334556666 7776 66554 2336888887 333
Q ss_pred C-eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccc
Q 003886 363 P-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 441 (789)
Q Consensus 363 ~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~ 441 (789)
+ ...+..+..... .++++|+.|+..+.+. .|.+||+.++..... ......
T Consensus 310 ~~~~~~~~~~~~v~--~~~~~~~~l~~~~~dg-----------~i~vwd~~~~~~~~~----------~~~~~~------ 360 (445)
T 2ovr_B 310 NCIHTLTGHQSLTS--GMELKDNILVSGNADS-----------TVKIWDIKTGQCLQT----------LQGPNK------ 360 (445)
T ss_dssp CEEEEECCCCSCEE--EEEEETTEEEEEETTS-----------CEEEEETTTCCEEEE----------ECSTTS------
T ss_pred CEEEEEcCCcccEE--EEEEeCCEEEEEeCCC-----------eEEEEECCCCcEEEE----------EccCCC------
Confidence 3 445554444333 4555788777666442 599999876543211 000000
Q ss_pred cccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec------CCCCCceeEEeeecCCEEEEEEeCCCCCCeE
Q 003886 442 YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT------PAESNFSWSLLTLDGDNIIAVSSSPVDVPQV 515 (789)
Q Consensus 442 ~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt------~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i 515 (789)
....+..+.| +++. ++++..++...+ +|+.+|+..+.. ...+.+....+++++..++....+...+..+
T Consensus 361 ~~~~v~~~~~--~~~~-l~s~~~dg~v~i--wd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l 435 (445)
T 2ovr_B 361 HQSAVTCLQF--NKNF-VITSSDDGTVKL--WDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKL 435 (445)
T ss_dssp CSSCEEEEEE--CSSE-EEEEETTSEEEE--EETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEE
T ss_pred CCCCEEEEEE--CCCE-EEEEeCCCeEEE--EECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEE
Confidence 0011233445 4554 455555665444 577788765433 1122334456777766555555555556778
Q ss_pred EEEeec
Q 003886 516 KYGYFV 521 (789)
Q Consensus 516 ~~~~~~ 521 (789)
++.|..
T Consensus 436 ~v~df~ 441 (445)
T 2ovr_B 436 LVLDFD 441 (445)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887764
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2e-05 Score=82.03 Aligned_cols=227 Identities=10% Similarity=0.019 Sum_probs=109.7
Q ss_pred cccEEEEeCCC----CCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEee
Q 003886 154 TGASAVVPSPS----GSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (789)
Q Consensus 154 ~~~~~~~~SPd----G~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~ 227 (789)
..+...++||| |++++.... ...+| .++ +.+.....+. |..+..+.+||||+.++-...
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g~-------~~~v~~l~~g--~lv~ss~~g~------d~~V~~~~~s~dG~~~~s~~~ 176 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSGN-------IKAVLGLTKR--RLVSSSGTLS------DQQVEVMTFAEDGGGKENQFL 176 (356)
T ss_dssp EEEEEECC------CCEEEEEEEE-------EEEEEEETTT--EEEEEESSST------TCEEEEEEECTTSCEEEEEEE
T ss_pred cceEEEEECCCccccccEEEeCCC-------eEEEEecCCC--cEEEecccCC------CCcEEEEEECCCCceeeeecc
Confidence 45778889999 888876432 12333 222 2222211122 223377888999987664322
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeC--Cccccc-CCccCceEEEEEccCCceE-eccCCC-CCCccceEEE
Q 003886 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE--DWGETY-AGKRQPSLFVININSGEVQ-AVKGIP-KSLSVGQVVW 302 (789)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~g~~~-~~~~~~~l~v~d~~~g~~~-~l~~~~-~~~~~~~~~w 302 (789)
... ......|++ +-++.+ ++..+..|.+||+++|+.. .+.+.. ....+...+|
T Consensus 177 ~~~----------------------~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf 234 (356)
T 2w18_A 177 MPP----------------------EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY 234 (356)
T ss_dssp CCC----------------------SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred CCC----------------------ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence 111 111122333 112222 3346789999999999854 442111 1124456689
Q ss_pred eeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeee-cC-----CCCCccCc
Q 003886 303 APLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-LT-----ESISSAFF 376 (789)
Q Consensus 303 SPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-Lt-----~~~~~~~~ 376 (789)
||||+. ++..+..... .-. ..-.....|.++|. .++.... +. .+.....
T Consensus 235 SpdG~~----lvs~s~~~~~--w~l-aSGs~D~tIklWd~-----------------~tgk~l~v~~~~~p~Gh~~~~l- 289 (356)
T 2w18_A 235 SEMGLL----FIVLSHPCAK--ESE-SLRSPVFQLIVINP-----------------KTTLSVGVMLYCLPPGQAGRFL- 289 (356)
T ss_dssp EETTEE----EEEEC---------------CCEEEEEEET-----------------TTTEEEEEEEECCCTTCCCCEE-
T ss_pred CCCCCE----EEEeccCCCc--cee-eccCCCcEEEEEEC-----------------CCCEEEEEEEeeccCCCcceeE-
Confidence 999987 7655431110 000 00012335666776 4444321 10 1111111
Q ss_pred ceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCC
Q 003886 377 PRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGC 456 (789)
Q Consensus 377 p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~ 456 (789)
..+.+|..++-.+.+. .|.+||+.+++......+..+ .-...+.|+|||+
T Consensus 290 -sg~~sg~~lASgS~Dg-----------TIkIWDl~tGk~l~tL~gH~~------------------~vvs~vafSPDG~ 339 (356)
T 2w18_A 290 -EGDVKDHCAAAILTSG-----------TIAIWDLLLGQCTALLPPVSD------------------QHWSFVKWSGTDS 339 (356)
T ss_dssp -EEEEETTEEEEEETTS-----------CEEEEETTTCSEEEEECCC--------------------CCCCEEEECSSSS
T ss_pred -ccccCCCEEEEEcCCC-----------cEEEEECCCCcEEEEecCCCC------------------CeEEEEEECCCCC
Confidence 2222355555544332 599999988765321111100 0112357999999
Q ss_pred EEEEEEEeCCeEEEEEE
Q 003886 457 TMLLSSIWGSSQVIISV 473 (789)
Q Consensus 457 ~l~~~~~~~~~~~l~~~ 473 (789)
+| +++..++..+||.+
T Consensus 340 ~L-aSGS~D~TIklWd~ 355 (356)
T 2w18_A 340 HL-LAGQKDGNIFVYHY 355 (356)
T ss_dssp EE-EEECTTSCEEEEEE
T ss_pred EE-EEEECCCcEEEecC
Confidence 65 67777788888753
|
| >2cb9_A Fengycin synthetase; thioesterase, non-ribosomal peptide synthesis, alpha/beta- hydrolases, catalytic triade, hydrolase; 1.8A {Bacillus subtilis} PDB: 2cbg_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=2e-06 Score=86.58 Aligned_cols=92 Identities=8% Similarity=-0.007 Sum_probs=66.4
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
..|.||++||.+++ ...|......|. .+|.|+.+|++| ++. ..+++.+.++.+. ..
T Consensus 21 ~~~~l~~~hg~~~~--~~~~~~~~~~l~-~~~~v~~~d~~g---~~~-------------~~~~~~~~i~~~~-----~~ 76 (244)
T 2cb9_A 21 GGKNLFCFPPISGF--GIYFKDLALQLN-HKAAVYGFHFIE---EDS-------------RIEQYVSRITEIQ-----PE 76 (244)
T ss_dssp CSSEEEEECCTTCC--GGGGHHHHHHTT-TTSEEEEECCCC---STT-------------HHHHHHHHHHHHC-----SS
T ss_pred CCCCEEEECCCCCC--HHHHHHHHHHhC-CCceEEEEcCCC---HHH-------------HHHHHHHHHHHhC-----CC
Confidence 45778999997664 456766666665 689999999987 211 1445555554431 23
Q ss_pred ccEEEEEcCccHHHHHHHHHhC---CCceeEEEEeCCcc
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLC 706 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~---p~~~~a~v~~~pv~ 706 (789)
.++.++|||+||.++..++.+. +++++++|+.++..
T Consensus 77 ~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~lvl~~~~~ 115 (244)
T 2cb9_A 77 GPYVLLGYSAGGNLAFEVVQAMEQKGLEVSDFIIVDAYK 115 (244)
T ss_dssp SCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCC
T ss_pred CCEEEEEECHhHHHHHHHHHHHHHcCCCccEEEEEcCCC
Confidence 5799999999999999988764 57889888887654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.35 E-value=8.2e-05 Score=77.24 Aligned_cols=196 Identities=10% Similarity=0.027 Sum_probs=101.8
Q ss_pred eEEEEEccCCceEec-cCCCC---CCccceEEEeeCCCCCccEEEEEeecCCceeeeee-eeccCCcceEEEecccccch
Q 003886 274 SLFVININSGEVQAV-KGIPK---SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK-YCYNRPCALYAVRVSLYKSE 348 (789)
Q Consensus 274 ~l~v~d~~~g~~~~l-~~~~~---~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~-~~~~~~~~l~~~d~~~~~~~ 348 (789)
.|+++|.+ |+.+.+ ..... ...+..++++|||+ |+++..........+. ........||+++.
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-----l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~------ 160 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-----LWITAPAGEVAPADYTRSMQEKFGSIYCFTT------ 160 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-----EEEEECBCBCTTSCCCBTTSSSCEEEEEECT------
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-----EEEEecCcccccccccccccCCCCeEEEECC------
Confidence 68899988 777655 31111 12467889999986 6665432100000000 00011236888886
Q ss_pred hhhhhhhcCCCCCCCeeecCCCCCccCcceec----CCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCccccee
Q 003886 349 ASELELKESSSEDLPVVNLTESISSAFFPRFS----PDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV 424 (789)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~S----pDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~ 424 (789)
+ ++.+.+..........+|+ |||+.|++..... ..|+++|....+.. . ..
T Consensus 161 -----------~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~----------~~i~~~~~~~~g~~--~--~~ 214 (314)
T 1pjx_A 161 -----------D-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPT----------KKLWSYDIKGPAKI--E--NK 214 (314)
T ss_dssp -----------T-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTT----------TEEEEEEEEETTEE--E--EE
T ss_pred -----------C-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCC----------CeEEEEECCCCCcc--c--cc
Confidence 4 4444443333334567899 9998776654322 36899987521110 0 00
Q ss_pred eEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcE-EEecCCCCCceeEEeeecCCEEE
Q 003886 425 DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGEL-LRITPAESNFSWSLLTLDGDNII 503 (789)
Q Consensus 425 ~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~-~~lt~~~~~~~~~~~s~dg~~l~ 503 (789)
.+.. ..+... + .....+.+++||+ |++..... ..|+++|.++|+. ..+...........++++|+.|+
T Consensus 215 ~~~~--~~~~~~-~-----~~p~~i~~d~~G~-l~v~~~~~--~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~ 283 (314)
T 1pjx_A 215 KVWG--HIPGTH-E-----GGADGMDFDEDNN-LLVANWGS--SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIF 283 (314)
T ss_dssp EEEE--ECCCCS-S-----CEEEEEEEBTTCC-EEEEEETT--TEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEE
T ss_pred eEEE--ECCCCC-C-----CCCCceEECCCCC-EEEEEcCC--CEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEE
Confidence 0110 000000 0 0123467888986 66654333 3678889876654 33332222334456678888776
Q ss_pred EEEeCCCCCCeEEEEeec
Q 003886 504 AVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 504 ~~~ss~~~p~~i~~~~~~ 521 (789)
+..... ..|+++++.
T Consensus 284 v~~~~~---~~l~~~~~~ 298 (314)
T 1pjx_A 284 VTEHEN---NAVWKFEWQ 298 (314)
T ss_dssp EEETTT---TEEEEEECS
T ss_pred EEeCCC---CeEEEEeCC
Confidence 665433 457777764
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=98.34 E-value=9.5e-06 Score=89.18 Aligned_cols=95 Identities=14% Similarity=0.079 Sum_probs=58.7
Q ss_pred CceEEEEEccCC-----ce----EeccCCC-CCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEe
Q 003886 272 QPSLFVININSG-----EV----QAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 341 (789)
Q Consensus 272 ~~~l~v~d~~~g-----~~----~~l~~~~-~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d 341 (789)
+..|.+||+.++ +. ..+.... ....+..++|+|++.. ++.++. .+..|.++|
T Consensus 117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~----~las~s--------------~Dg~v~iwD 178 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS----MVAVCL--------------ADGSIAVLQ 178 (434)
T ss_dssp EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT----EEEEEE--------------TTSCEEEEE
T ss_pred CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC----EEEEEE--------------CCCeEEEEE
Confidence 367889998764 11 0111011 2346789999999544 454442 223688888
Q ss_pred cccccchhhhhhhhcCCCCCCCe-eecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecC
Q 003886 342 VSLYKSEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 412 (789)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~-~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~ 412 (789)
+ .++.. .....+...+...+|||||++|+..+.+. .|.+||..
T Consensus 179 ~-----------------~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg-----------~v~iwd~~ 222 (434)
T 2oit_A 179 V-----------------TETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNG-----------TVVQYLPT 222 (434)
T ss_dssp E-----------------SSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTS-----------CEEEECTT
T ss_pred c-----------------CCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCC-----------cEEEEccC
Confidence 7 33322 22223345678899999999998777543 58889876
|
| >3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.3e-06 Score=90.45 Aligned_cols=103 Identities=12% Similarity=0.153 Sum_probs=72.1
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHH-HHHHHHcCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLAN 669 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~d 669 (789)
..|.|+++||++++ ...|......| ..+|.|+.+|++| +|.+... ...++++.+. ++.+.+. ..
T Consensus 100 ~~~~l~~lhg~~~~--~~~~~~l~~~L-~~~~~v~~~d~~g---~~~~~~~-------~~~~~~~a~~~~~~i~~~--~~ 164 (329)
T 3tej_A 100 NGPTLFCFHPASGF--AWQFSVLSRYL-DPQWSIIGIQSPR---PNGPMQT-------AANLDEVCEAHLATLLEQ--QP 164 (329)
T ss_dssp SSCEEEEECCTTSC--CGGGGGGGGTS-CTTCEEEEECCCT---TTSHHHH-------CSSHHHHHHHHHHHHHHH--CS
T ss_pred CCCcEEEEeCCccc--chHHHHHHHhc-CCCCeEEEeeCCC---CCCCCCC-------CCCHHHHHHHHHHHHHHh--CC
Confidence 45789999997664 45565555556 5679999999987 4443311 1234454443 3333332 23
Q ss_pred CccEEEEEcCccHHHHHHHHHh---CCCceeEEEEeCCccch
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQ---APDKFVAAAARNPLCNL 708 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~---~p~~~~a~v~~~pv~~~ 708 (789)
..++.++|||+||.++..++.+ ++++++.+|+..+....
T Consensus 165 ~~~~~l~G~S~Gg~ia~~~a~~L~~~~~~v~~lvl~d~~~~~ 206 (329)
T 3tej_A 165 HGPYYLLGYSLGGTLAQGIAARLRARGEQVAFLGLLDTWPPE 206 (329)
T ss_dssp SSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESCCCTH
T ss_pred CCCEEEEEEccCHHHHHHHHHHHHhcCCcccEEEEeCCCCCC
Confidence 4689999999999999999998 89999999998876543
|
| >2hih_A Lipase 46 kDa form; A1 phospholipase, phospholipid binding, hydrolase; 2.86A {Staphylococcus hyicus} | Back alignment and structure |
|---|
Probab=98.28 E-value=2e-06 Score=93.15 Aligned_cols=101 Identities=14% Similarity=0.120 Sum_probs=66.4
Q ss_pred CCcEEEEEcCCCCCC------CchhhH----HHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHH-
Q 003886 591 CDPLIVVLHGGPHSV------SLSSYS----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAI- 659 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~------~~~~~~----~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i- 659 (789)
..|.||++||..+.. ....|. .....|+++||.|+++|++| +|.+... ..++...+
T Consensus 51 ~~~pVVLvHG~~g~~~~~~~~~~~~W~~~~~~l~~~L~~~Gy~Via~Dl~G---~G~S~~~----------~~~l~~~i~ 117 (431)
T 2hih_A 51 NKDPFVFVHGFTGFVGEVAAKGENYWGGTKANLRNHLRKAGYETYEASVSA---LASNHER----------AVELYYYLK 117 (431)
T ss_dssp CSSCEEEECCTTCCCGGGSCTTCCTTTTTTCCHHHHHHHTTCCEEEECCCS---SSCHHHH----------HHHHHHHHH
T ss_pred CCCeEEEECCCCCCcccccccchhhhhccHHHHHHHHHhCCCEEEEEcCCC---CCCCccc----------hHHhhhhhh
Confidence 456688999976531 123443 36778899999999999987 5544311 00111100
Q ss_pred -----------------------HHHHHcCCCC-CccEEEEEcCccHHHHHHHHHh------------------------
Q 003886 660 -----------------------DHVIDMGLAN-PSKVTVVGGSHGGFLTTHLIGQ------------------------ 691 (789)
Q Consensus 660 -----------------------~~l~~~~~~d-~~rv~l~G~S~GG~~a~~~~~~------------------------ 691 (789)
..+++. +. .+++.|+||||||.++..++..
T Consensus 118 ~g~g~sg~~~~~~~~~~~~a~dl~~ll~~--l~~~~kv~LVGHSmGG~iA~~lA~~l~~~~~~~~~~~~~~gg~i~~l~~ 195 (431)
T 2hih_A 118 GGRVDYGAAHSEKYGHERYGKTYEGVLKD--WKPGHPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFK 195 (431)
T ss_dssp CEEEECCHHHHHHHTCCSEEEEECCSCTT--CBTTBCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHCSCCCHHHH
T ss_pred hccccccccccccCCHHHHHHHHHHHHHH--hCCCCCEEEEEEChhHHHHHHHHHHhccccccchhhccccccccccccc
Confidence 000111 12 3789999999999999998765
Q ss_pred --CCCceeEEEEeCCcc
Q 003886 692 --APDKFVAAAARNPLC 706 (789)
Q Consensus 692 --~p~~~~a~v~~~pv~ 706 (789)
+|++++.+|+.++..
T Consensus 196 g~~p~~V~slv~i~tP~ 212 (431)
T 2hih_A 196 GGQDNMVTSITTIATPH 212 (431)
T ss_dssp CCCCSCEEEEEEESCCT
T ss_pred cCcccceeEEEEECCCC
Confidence 688999999998753
|
| >2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A | Back alignment and structure |
|---|
Probab=98.27 E-value=4.4e-06 Score=87.76 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=64.4
Q ss_pred EEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccE
Q 003886 594 LIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKV 673 (789)
Q Consensus 594 ~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv 673 (789)
.|+++||.........|......|. .+|.|+.+|++| +|.+... .. ......++++.+.+..++..- .+..++
T Consensus 91 ~l~~~hg~g~~~~~~~~~~l~~~L~-~~~~v~~~d~~G---~g~~~~~-~~-~~~~~~~~~~a~~~~~~i~~~-~~~~p~ 163 (319)
T 2hfk_A 91 VLVGCTGTAANGGPHEFLRLSTSFQ-EERDFLAVPLPG---YGTGTGT-GT-ALLPADLDTALDAQARAILRA-AGDAPV 163 (319)
T ss_dssp EEEEECCCCTTCSTTTTHHHHHTTT-TTCCEEEECCTT---CCBC----CB-CCEESSHHHHHHHHHHHHHHH-HTTSCE
T ss_pred cEEEeCCCCCCCcHHHHHHHHHhcC-CCCceEEecCCC---CCCCccc-cc-CCCCCCHHHHHHHHHHHHHHh-cCCCCE
Confidence 7899997211113456666666665 689999999988 4432000 00 001223444443332222210 134679
Q ss_pred EEEEcCccHHHHHHHHHhC----CCceeEEEEeCCc
Q 003886 674 TVVGGSHGGFLTTHLIGQA----PDKFVAAAARNPL 705 (789)
Q Consensus 674 ~l~G~S~GG~~a~~~~~~~----p~~~~a~v~~~pv 705 (789)
.++|||+||.++..+|.+. ++.++.+|+.++.
T Consensus 164 ~l~G~S~GG~vA~~~A~~l~~~~g~~v~~lvl~d~~ 199 (319)
T 2hfk_A 164 VLLGHAGGALLAHELAFRLERAHGAPPAGIVLVDPY 199 (319)
T ss_dssp EEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCC
T ss_pred EEEEECHHHHHHHHHHHHHHHhhCCCceEEEEeCCC
Confidence 9999999999999999875 4568999988764
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=6.7e-05 Score=75.58 Aligned_cols=181 Identities=18% Similarity=0.134 Sum_probs=105.5
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
...|.++|+++|++..-...+. ......++++|+. |+...|. ...++++|.
T Consensus 43 ~s~v~~iD~~tg~v~~~i~l~~--~~fgeGi~~~g~~----lyv~t~~--------------~~~v~viD~--------- 93 (266)
T 2iwa_A 43 RSSVRQVALQTGKVENIHKMDD--SYFGEGLTLLNEK----LYQVVWL--------------KNIGFIYDR--------- 93 (266)
T ss_dssp TCEEEEEETTTCCEEEEEECCT--TCCEEEEEEETTE----EEEEETT--------------CSEEEEEET---------
T ss_pred CCEEEEEECCCCCEEEEEecCC--CcceEEEEEeCCE----EEEEEec--------------CCEEEEEEC---------
Confidence 4789999999998765421222 2223345666776 6666542 237999997
Q ss_pred hhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeee
Q 003886 352 LELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (789)
Q Consensus 352 ~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~ 430 (789)
++.+ ..++..+ ......+++||++|+ .++. ..+|+++|..+.+.. ..+.+-
T Consensus 94 --------~t~~v~~~i~~g--~~~g~glt~Dg~~l~-vs~g----------s~~l~viD~~t~~v~-------~~I~Vg 145 (266)
T 2iwa_A 94 --------RTLSNIKNFTHQ--MKDGWGLATDGKILY-GSDG----------TSILYEIDPHTFKLI-------KKHNVK 145 (266)
T ss_dssp --------TTTEEEEEEECC--SSSCCEEEECSSSEE-EECS----------SSEEEEECTTTCCEE-------EEEECE
T ss_pred --------CCCcEEEEEECC--CCCeEEEEECCCEEE-EECC----------CCeEEEEECCCCcEE-------EEEEEC
Confidence 4443 3444322 123456889999876 4532 247999998774432 111111
Q ss_pred eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC--------------CCceeEEee
Q 003886 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE--------------SNFSWSLLT 496 (789)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~--------------~~~~~~~~s 496 (789)
..+..-. .+..+.|. || +||+. .+. ...|.++|+++|++....... .......++
T Consensus 146 ~~~~p~~-------~~nele~~-dg-~lyvn-~~~-~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~ 214 (266)
T 2iwa_A 146 YNGHRVI-------RLNELEYI-NG-EVWAN-IWQ-TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWD 214 (266)
T ss_dssp ETTEECC-------CEEEEEEE-TT-EEEEE-ETT-SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEE
T ss_pred CCCcccc-------cceeEEEE-CC-EEEEe-cCC-CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEc
Confidence 1100000 11234566 66 57644 333 347999999999876543221 122456889
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 497 LDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 497 ~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
+++++++.+.... +.++.+++...
T Consensus 215 ~~~~~lfVTgk~~---~~v~~i~l~~~ 238 (266)
T 2iwa_A 215 QENKRIFVTGKLW---PKLFEIKLHLV 238 (266)
T ss_dssp TTTTEEEEEETTC---SEEEEEEEEEC
T ss_pred CCCCEEEEECCCC---CeEEEEEEecc
Confidence 9999988887655 44888887643
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00017 Score=72.97 Aligned_cols=175 Identities=5% Similarity=-0.042 Sum_probs=93.1
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
..|+++|.+++....+. .........++++|||+ |+++.. ....|++++.
T Consensus 87 ~~i~~~d~~~~~~~~~~-~~~~~~p~~i~~~~~g~-----l~v~~~--------------~~~~i~~~~~---------- 136 (270)
T 1rwi_B 87 NRVVTLAAGSNNQTVLP-FDGLNYPEGLAVDTQGA-----VYVADR--------------GNNRVVKLAA---------- 136 (270)
T ss_dssp TEEEEECTTCSCCEECC-CCSCSSEEEEEECTTCC-----EEEEEG--------------GGTEEEEECT----------
T ss_pred CEEEEEeCCCceEeeee-cCCcCCCcceEECCCCC-----EEEEEC--------------CCCEEEEEEC----------
Confidence 46888888877665542 12223566888999886 555431 1225888875
Q ss_pred hhhcCCCCCCCeeecC-CCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeee
Q 003886 353 ELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 431 (789)
Q Consensus 353 ~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~ 431 (789)
.+....... .........+++|||+ |++.... ...|+++|..++........
T Consensus 137 -------~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~----------~~~i~~~~~~~~~~~~~~~~--------- 189 (270)
T 1rwi_B 137 -------GSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTD----------NNRVVKLEAESNNQVVLPFT--------- 189 (270)
T ss_dssp -------TCCSCEECCCCSCCSCCCEEECTTCC-EEEEEGG----------GTEEEEECTTTCCEEECCCS---------
T ss_pred -------CCceeEeeccccCCCceeEEEeCCCC-EEEEECC----------CCEEEEEecCCCceEeeccc---------
Confidence 333222222 1223467789999998 4443322 24699999765432111000
Q ss_pred ccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC-CCceeEEeeecCCEEEEEEeCCC
Q 003886 432 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPV 510 (789)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~ss~~ 510 (789)
.+ .....+.+++|| .||++... ...|++++.++.....+.... .......++++|+ ++++.....
T Consensus 190 -----~~-----~~p~~i~~d~~g-~l~v~~~~--~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~ 255 (270)
T 1rwi_B 190 -----DI-----TAPWGIAVDEAG-TVYVTEHN--TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT-VYVADRGND 255 (270)
T ss_dssp -----SC-----CSEEEEEECTTC-CEEEEETT--TSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCC-EEEEEGGGT
T ss_pred -----CC-----CCceEEEECCCC-CEEEEECC--CCcEEEEcCCCCcceeeccCCCCCceeEEECCCCC-EEEEECCCC
Confidence 00 012355778888 47665432 235777888666554443222 2223345566664 544444332
Q ss_pred CCCeEEEEeec
Q 003886 511 DVPQVKYGYFV 521 (789)
Q Consensus 511 ~p~~i~~~~~~ 521 (789)
.|.++++.
T Consensus 256 ---~v~~~~~~ 263 (270)
T 1rwi_B 256 ---RVVKLTSL 263 (270)
T ss_dssp ---EEEEECCC
T ss_pred ---EEEEEcCC
Confidence 35555543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00021 Score=77.06 Aligned_cols=178 Identities=11% Similarity=0.021 Sum_probs=106.1
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
..|++++++++..+.+. ...-.....+++.+.+.. |+++-. ....|+++++
T Consensus 138 ~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~----lY~~d~--------------~~~~I~~~~~---------- 188 (386)
T 3v65_B 138 DRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDK----LYWTDS--------------GTSRIEVANL---------- 188 (386)
T ss_dssp TEEEEEETTSCCEEEEE-CSSCSCCCCEEEETTTTE----EEEEET--------------TTTEEEECBT----------
T ss_pred CcEEEEecCCCCcEEEE-eCCCCCccEEEEEeCCCe----EEEEcC--------------CCCeEEEEeC----------
Confidence 57999999988766652 122224567888888876 766542 1236888887
Q ss_pred hhhcCCCCCCCeeecC-CCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeee
Q 003886 353 ELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 431 (789)
Q Consensus 353 ~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~ 431 (789)
++...+.+. .........++.|++..|+|..... ..+|+++++++...+.+...
T Consensus 189 -------dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~---------~~~I~r~~~dG~~~~~~~~~--------- 243 (386)
T 3v65_B 189 -------DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN---------TPRIEASSMDGSGRRIIADT--------- 243 (386)
T ss_dssp -------TSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCSCEEEECS---------
T ss_pred -------CCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCC---------CCEEEEEeCCCCCcEEEEEC---------
Confidence 444444433 3334456778999988888775321 25799999876443211100
Q ss_pred ccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCC
Q 003886 432 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVD 511 (789)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~ 511 (789)
.... ...++|++++++||++- .....|+++|++++..+.+...... .-..++.+++.++++...
T Consensus 244 ---~~~~-------PnGlavd~~~~~lY~aD--~~~~~I~~~d~dG~~~~~~~~~~~~-~P~giav~~~~ly~td~~--- 307 (386)
T 3v65_B 244 ---HLFW-------PNGLTIDYAGRRMYWVD--AKHHVIERANLDGSHRKAVISQGLP-HPFAITVFEDSLYWTDWH--- 307 (386)
T ss_dssp ---SCSC-------EEEEEEEGGGTEEEEEE--TTTTEEEEECTTSCSCEEEECSSCS-SEEEEEEETTEEEEEETT---
T ss_pred ---CCCC-------eeeEEEeCCCCEEEEEE--CCCCEEEEEeCCCCeeEEEEECCCC-CceEEEEECCEEEEeeCC---
Confidence 0011 23568998888898874 3445789999876655555432211 112344466677666532
Q ss_pred CCeEEEEee
Q 003886 512 VPQVKYGYF 520 (789)
Q Consensus 512 p~~i~~~~~ 520 (789)
-..|.+++.
T Consensus 308 ~~~V~~~~~ 316 (386)
T 3v65_B 308 TKSINSANK 316 (386)
T ss_dssp TTEEEEEET
T ss_pred CCeEEEEEC
Confidence 234666663
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00032 Score=73.25 Aligned_cols=229 Identities=9% Similarity=-0.003 Sum_probs=130.5
Q ss_pred eEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCC
Q 003886 167 KLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGS 245 (789)
Q Consensus 167 ~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~ 245 (789)
+|+|....+ +..++ ..++...+....... .++.|++++++|+++..
T Consensus 3 ~ll~~~~~~-----I~~i~~~~~~~~~~~~~~~~p----------~g~~~d~~~~~ly~~D~------------------ 49 (316)
T 1ijq_A 3 YLFFTNRHE-----VRKMTLDRSEYTSLIPNLRNV----------VALDTEVASNRIYWSDL------------------ 49 (316)
T ss_dssp EEEEECBSS-----EEEEETTSCCCEEEECSCSSE----------EEEEEETTTTEEEEEET------------------
T ss_pred EEEEECCCe-----EEEEECCCcceEehhcCCCce----------EEEEEEeCCCEEEEEEC------------------
Confidence 456654443 77777 444444443322222 58999999888877632
Q ss_pred CCcCCCCCCCcceeeCCcccccCCccCceEEEEEccC----CceEeccCCCCC-CccceEEEeeCCCCCccEEEEEeecC
Q 003886 246 SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININS----GEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSS 320 (789)
Q Consensus 246 ~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~----g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~l~f~~~~~ 320 (789)
....|+++++++ ...+.+ .... .....+++.+.++. |+++-.
T Consensus 50 -------------------------~~~~I~~~~~~g~~~~~~~~~~--~~~~~~~p~glavd~~~~~----ly~~d~-- 96 (316)
T 1ijq_A 50 -------------------------SQRMICSTQLDRAHGVSSYDTV--ISRDIQAPDGLAVDWIHSN----IYWTDS-- 96 (316)
T ss_dssp -------------------------TTTEEEEEEC--------CEEE--ECSSCSCCCEEEEETTTTE----EEEEET--
T ss_pred -------------------------CCCcEEEEECCCCCCCcccEEE--EeCCCCCcCEEEEeecCCe----EEEEEC--
Confidence 235788898876 333333 2222 24567888887776 666531
Q ss_pred CceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCC-CCCccCcceecCCCCEEEEEecCCCCCCCC
Q 003886 321 ETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGA 399 (789)
Q Consensus 321 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~la~~s~~~~~~~g~ 399 (789)
....|.++++ ++...+.+.. ........++.|++..|+|.....
T Consensus 97 ------------~~~~I~~~~~-----------------~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~------ 141 (316)
T 1ijq_A 97 ------------VLGTVSVADT-----------------KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT------ 141 (316)
T ss_dssp ------------TTTEEEEEET-----------------TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS------
T ss_pred ------------CCCEEEEEeC-----------------CCCceEEEEECCCCCcceEEeCCCCCEEEEEccCC------
Confidence 1236888887 5544444432 334456778999888888775321
Q ss_pred ccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc
Q 003886 400 HSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE 479 (789)
Q Consensus 400 ~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~ 479 (789)
..+|++++.++...+.+ .. . .... ...++|++++++||++- .....|+++|++++.
T Consensus 142 ---~~~I~~~~~dG~~~~~~-------~~---~--~~~~-------P~gla~d~~~~~lY~~D--~~~~~I~~~d~dg~~ 197 (316)
T 1ijq_A 142 ---PAKIKKGGLNGVDIYSL-------VT---E--NIQW-------PNGITLDLLSGRLYWVD--SKLHSISSIDVNGGN 197 (316)
T ss_dssp ---SCEEEEEETTSCCEEEE-------EC---S--SCSC-------EEEEEEETTTTEEEEEE--TTTTEEEEEETTSCS
T ss_pred ---CCeEEEEcCCCCCeEEE-------EE---C--CCCC-------ceEEEEeccCCEEEEEE--CCCCeEEEEecCCCc
Confidence 24799998865332111 00 0 0011 23567999999898864 334578999998766
Q ss_pred EEEecCCC-CCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 480 LLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 480 ~~~lt~~~-~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
.+.+.... ....-..++.+++.++++... -..|++++..++
T Consensus 198 ~~~~~~~~~~~~~P~giav~~~~ly~~d~~---~~~V~~~~~~~g 239 (316)
T 1ijq_A 198 RKTILEDEKRLAHPFSLAVFEDKVFWTDII---NEAIFSANRLTG 239 (316)
T ss_dssp CEEEEECTTTTSSEEEEEEETTEEEEEETT---TTEEEEEETTTC
T ss_pred eEEEeecCCccCCcEEEEEECCEEEEEECC---CCeEEEEeCCCC
Confidence 65554321 111112344466777766533 245777775433
|
| >2dsn_A Thermostable lipase; T1 lipase, hydrolase; 1.50A {Geobacillus zalihae} PDB: 3umj_A 2z5g_A 1ji3_A 3auk_A 2w22_A* 1ku0_A | Back alignment and structure |
|---|
Probab=98.16 E-value=5.8e-06 Score=88.21 Aligned_cols=103 Identities=16% Similarity=0.192 Sum_probs=65.4
Q ss_pred CCcEEEEEcCCCCCCCc-----hhhH----HHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHH
Q 003886 591 CDPLIVVLHGGPHSVSL-----SSYS----KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDH 661 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~-----~~~~----~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~ 661 (789)
..|.||++||..+.... ..|. ...+.|+++||.|+++|++| +|.... ...++...++.
T Consensus 5 ~~~pVVLvHG~~g~~~~~~~~~~yW~~~~~~la~~L~~~G~~Via~Dl~g---~G~s~~----------~a~~l~~~i~~ 71 (387)
T 2dsn_A 5 NDAPIVLLHGFTGWGREEMFGFKYWGGVRGDIEQWLNDNGYRTYTLAVGP---LSSNWD----------RACEAYAQLVG 71 (387)
T ss_dssp CCCCEEEECCSSCCCTTSGGGCCTTTTTTCCHHHHHHHTTCCEEEECCCS---SBCHHH----------HHHHHHHHHHC
T ss_pred CCCcEEEECCCCCCCcccccccchhhhhhHHHHHHHHHCCCEEEEecCCC---CCCccc----------cHHHHHHHHHh
Confidence 34558899997654211 2343 23478999999999999987 444321 01222222221
Q ss_pred --------HHHc-----------C----CCCCccEEEEEcCccHHHHHHHHHh-------------------CC------
Q 003886 662 --------VIDM-----------G----LANPSKVTVVGGSHGGFLTTHLIGQ-------------------AP------ 693 (789)
Q Consensus 662 --------l~~~-----------~----~~d~~rv~l~G~S~GG~~a~~~~~~-------------------~p------ 693 (789)
+.+. . ....+++.|+||||||.++..++.+ +|
T Consensus 72 ~~vDy~~~~a~~~~~~~~~~~l~~ll~~~~~~~kv~LVGHSmGG~va~~~a~~l~~~~~~e~~~~~~~~~~~~P~~~g~~ 151 (387)
T 2dsn_A 72 GTVDYGAAHAAKHGHARFGRTYPGLLPELKRGGRIHIIAHSQGGQTARMLVSLLENGSQEEREYAKAHNVSLSPLFEGGH 151 (387)
T ss_dssp EEEECCHHHHHHHTSCSEEEEECCSCGGGGTTCCEEEEEETTHHHHHHHHHHHHHHCCHHHHHHHHHHTCCCCGGGTCCC
T ss_pred hhhhhhhhhhhhccchhhhhhHHHHHHHhcCCCceEEEEECHHHHHHHHHHHHhccccccccccccccccccCccccccc
Confidence 1000 0 0245789999999999999998872 35
Q ss_pred CceeEEEEeCCcc
Q 003886 694 DKFVAAAARNPLC 706 (789)
Q Consensus 694 ~~~~a~v~~~pv~ 706 (789)
++++.+|..++..
T Consensus 152 ~~V~sLV~i~tP~ 164 (387)
T 2dsn_A 152 HFVLSVTTIATPH 164 (387)
T ss_dssp CCEEEEEEESCCT
T ss_pred cceeEEEEECCCC
Confidence 7899999988643
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00044 Score=73.36 Aligned_cols=178 Identities=11% Similarity=0.008 Sum_probs=105.6
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
..|++++++++..+.+. ..+-.....+++.+.+.. |+++-. ....|+++++
T Consensus 95 ~~I~r~~~~g~~~~~~~-~~~~~~p~glavd~~~g~----ly~~d~--------------~~~~I~~~~~---------- 145 (349)
T 3v64_C 95 DRILRANLNGSNVEEVV-STGLESPGGLAVDWVHDK----LYWTDS--------------GTSRIEVANL---------- 145 (349)
T ss_dssp TEEEEEETTSCSCEEEE-CSSCSCCCEEEEETTTTE----EEEEET--------------TTTEEEEEET----------
T ss_pred CceEEEecCCCCceEEE-eCCCCCccEEEEecCCCe----EEEEcC--------------CCCeEEEEcC----------
Confidence 57999999888766552 122234567888888876 776642 1236889987
Q ss_pred hhhcCCCCCCCeeecC-CCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeee
Q 003886 353 ELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 431 (789)
Q Consensus 353 ~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~ 431 (789)
++...+.+. .........++.|++..|+|..... ..+|+++++++...+.+...
T Consensus 146 -------dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~---------~~~I~r~~~dG~~~~~~~~~--------- 200 (349)
T 3v64_C 146 -------DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN---------TPRIEASSMDGSGRRIIADT--------- 200 (349)
T ss_dssp -------TSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCSCEESCCS---------
T ss_pred -------CCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC---------CCEEEEEeCCCCCcEEEEEC---------
Confidence 444444443 3334456778999888888776331 25799999876443222110
Q ss_pred ccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCC
Q 003886 432 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVD 511 (789)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~ 511 (789)
+.. ....++|++++++||++- .+...|+++|++++..+.+...... .-..++.+++.++++....
T Consensus 201 ---~~~-------~PnGla~d~~~~~lY~aD--~~~~~I~~~~~dG~~~~~~~~~~~~-~P~giav~~~~ly~td~~~-- 265 (349)
T 3v64_C 201 ---HLF-------WPNGLTIDYAGRRMYWVD--AKHHVIERANLDGSHRKAVISQGLP-HPFAITVFEDSLYWTDWHT-- 265 (349)
T ss_dssp ---SCS-------CEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEECSSCS-SEEEEEEETTEEEEEETTT--
T ss_pred ---CCC-------CcceEEEeCCCCEEEEEE--CCCCEEEEEeCCCCceEEEEeCCCC-CceEEEEECCEEEEecCCC--
Confidence 001 123568999888898874 3345789999877655554432211 1123333566666654332
Q ss_pred CCeEEEEee
Q 003886 512 VPQVKYGYF 520 (789)
Q Consensus 512 p~~i~~~~~ 520 (789)
..|.+++.
T Consensus 266 -~~V~~~~~ 273 (349)
T 3v64_C 266 -KSINSANK 273 (349)
T ss_dssp -TEEEEEET
T ss_pred -CeEEEEEc
Confidence 24666653
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=8e-05 Score=79.26 Aligned_cols=84 Identities=10% Similarity=-0.025 Sum_probs=50.4
Q ss_pred ceecCCCCEEEEEec-C-CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccC
Q 003886 377 PRFSPDGKFLVFLSA-K-SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 454 (789)
Q Consensus 377 p~~SpDG~~la~~s~-~-~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~D 454 (789)
..++|||++|++... . .... + ....+.++|+.+.+.... +++-. ....+.|++|
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~-~---~~~~~~ViD~~t~~vv~~-------i~vg~-------------~p~gi~~s~D 324 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCL-A---AAENTSSVTASVGQTSGP-------ISNGH-------------DSDAIIAAQD 324 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTT-S---CEEEEEEEESSSCCEEEC-------CEEEE-------------EECEEEECCS
T ss_pred eEEcCCCCEEEEEeccccCccc-c---cCCCEEEEECCCCeEEEE-------EECCC-------------CcceEEECCC
Confidence 579999999876543 1 1000 0 012356999988654211 11000 1236689999
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCcEEEecC
Q 003886 455 GCTMLLSSIWGSSQVIISVNVSSGELLRITP 485 (789)
Q Consensus 455 g~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~ 485 (789)
|+++|++... +...|..+|+.++++..-.+
T Consensus 325 g~~l~va~~~-~~~~VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 325 GASDNYANSA-GTEVLDIYDAASDQDQSSVE 354 (368)
T ss_dssp SSCEEEEEET-TTTEEEEEESSSCEEEEECC
T ss_pred CCEEEEEccC-CCCeEEEEECCCCcEEEEEE
Confidence 9988777552 23468888999998775544
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0011 Score=68.83 Aligned_cols=228 Identities=12% Similarity=0.111 Sum_probs=118.9
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~ 235 (789)
...++|+|+|+ |+++... ...++.++..++........... .++.++|||+ | |++....
T Consensus 34 pegia~~~~g~-lyv~d~~---~~~I~~~d~~g~~~~~~~~~~~p----------~gia~~~dG~-l-~vad~~~----- 92 (306)
T 2p4o_A 34 LENLASAPDGT-IFVTNHE---VGEIVSITPDGNQQIHATVEGKV----------SGLAFTSNGD-L-VATGWNA----- 92 (306)
T ss_dssp EEEEEECTTSC-EEEEETT---TTEEEEECTTCCEEEEEECSSEE----------EEEEECTTSC-E-EEEEECT-----
T ss_pred cceEEECCCCC-EEEEeCC---CCeEEEECCCCceEEEEeCCCCc----------eeEEEcCCCc-E-EEEeccC-----
Confidence 45789999997 5444322 23577777555555554443333 6889999998 4 4433210
Q ss_pred ccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEE
Q 003886 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 315 (789)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f 315 (789)
....|+++|..+|+++.+...+.......++..+++ .+|
T Consensus 93 -----------------------------------~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~------~~~ 131 (306)
T 2p4o_A 93 -----------------------------------DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDT------QYL 131 (306)
T ss_dssp -----------------------------------TSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSS------EEE
T ss_pred -----------------------------------CcceEEEEcCCCCeEEEEEeCCCccccCcccccCCC------cEE
Confidence 123588888888887665312221122233433433 233
Q ss_pred EeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC--Ceee----c-----CCCCCccCcceecCCCC
Q 003886 316 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVVN----L-----TESISSAFFPRFSPDGK 384 (789)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~----L-----t~~~~~~~~p~~SpDG~ 384 (789)
++.. ....||++|. .++ .... + ......... ++|||+
T Consensus 132 v~d~-------------~~g~i~~~d~-----------------~~~~~~v~~~~~~~~~~~~~~~~~~png--is~dg~ 179 (306)
T 2p4o_A 132 TADS-------------YRGAIWLIDV-----------------VQPSGSIWLEHPMLARSNSESVFPAANG--LKRFGN 179 (306)
T ss_dssp EEET-------------TTTEEEEEET-----------------TTTEEEEEEECGGGSCSSTTCCSCSEEE--EEEETT
T ss_pred EEEC-------------CCCeEEEEeC-----------------CCCcEeEEEECCccccccccCCCCcCCC--cCcCCC
Confidence 4421 1236888886 222 1110 0 011111112 389999
Q ss_pred EEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe
Q 003886 385 FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW 464 (789)
Q Consensus 385 ~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~ 464 (789)
+|++.... ..+|+++|+.+.+.. .. ..+.... .....+++++||+ ||++. .
T Consensus 180 ~lyv~d~~----------~~~I~~~~~~~~g~~--~~--~~~~~~~-------------~~P~gi~vd~dG~-l~va~-~ 230 (306)
T 2p4o_A 180 FLYVSNTE----------KMLLLRIPVDSTDKP--GE--PEIFVEQ-------------TNIDDFAFDVEGN-LYGAT-H 230 (306)
T ss_dssp EEEEEETT----------TTEEEEEEBCTTSCB--CC--CEEEEES-------------CCCSSEEEBTTCC-EEEEC-B
T ss_pred EEEEEeCC----------CCEEEEEEeCCCCCC--Cc--cEEEecc-------------CCCCCeEECCCCC-EEEEe-C
Confidence 88765533 247999998752211 10 1111100 0234678889996 65543 2
Q ss_pred CCeEEEEEEECCCCcEEEe---cCCCCCceeEEee---ecCCEEEEEEeC
Q 003886 465 GSSQVIISVNVSSGELLRI---TPAESNFSWSLLT---LDGDNIIAVSSS 508 (789)
Q Consensus 465 ~~~~~l~~~dl~tg~~~~l---t~~~~~~~~~~~s---~dg~~l~~~~ss 508 (789)
. ...|.+++.+ |+...+ ...........|. +|+++|+.+...
T Consensus 231 ~-~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 231 I-YNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp T-TCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred C-CCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 2 2357778874 666443 2111222334566 677888777654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00024 Score=77.96 Aligned_cols=264 Identities=14% Similarity=0.118 Sum_probs=138.4
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCcc
Q 003886 160 VPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 237 (789)
Q Consensus 160 ~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~ 237 (789)
.++++|++|+..+..+ .+.+|+ .++..+.+. +..+.| ..+.|+ ++.|+..+.+.... .|+
T Consensus 124 ~~~~~g~~l~sg~~dg-----~i~vwd~~~~~~~~~~~---~h~~~v------~~~~~~--~~~l~s~~~dg~i~--vwd 185 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDN-----TLKVWSAVTGKCLRTLV---GHTGGV------WSSQMR--DNIIISGSTDRTLK--VWN 185 (445)
T ss_dssp EEEEETTEEEEEETTS-----CEEEEETTTCCEEEECC---CCSSCE------EEEEEE--TTEEEEEETTSCEE--EEE
T ss_pred EEEEcCCEEEEEECCC-----cEEEEECCCCcEEEEEc---CCCCCE------EEEEec--CCEEEEEeCCCeEE--EEE
Confidence 5777899998876654 456663 344333222 222233 667776 55677666654322 233
Q ss_pred CCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEe
Q 003886 238 LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 317 (789)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~ 317 (789)
............+........|.+ ...+++..+..|.+||+.+++..... ......+..+.| ||+. |+..+
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~~--~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~--~~~~----l~~~~ 256 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVL-MGHVAAVRCVQY--DGRR----VVSGA 256 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEESSSCCEEEEE-ECCSSCEEEEEE--CSSC----EEEEE
T ss_pred CCcCcEEEEECCCCCcEEEEEecC--CEEEEEeCCCEEEEEECCCCcEEEEE-cCCcccEEEEEE--CCCE----EEEEc
Confidence 222211111112222222233332 23445556789999999988765431 122334555666 7887 76665
Q ss_pred ecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCC
Q 003886 318 WSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDS 397 (789)
Q Consensus 318 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~ 397 (789)
.+..|.++|+. .......+..+...+....| ||+.|+..+.+.
T Consensus 257 ---------------~dg~i~iwd~~----------------~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~---- 299 (445)
T 2ovr_B 257 ---------------YDFMVKVWDPE----------------TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT---- 299 (445)
T ss_dssp ---------------TTSCEEEEEGG----------------GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTS----
T ss_pred ---------------CCCEEEEEECC----------------CCcEeEEecCCCCceEEEEE--CCCEEEEEeCCC----
Confidence 23368888872 22334455555556666666 899887776543
Q ss_pred CCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCC
Q 003886 398 GAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSS 477 (789)
Q Consensus 398 g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~t 477 (789)
.|.+||+.++.......... .....++++++.+ +++..++... .+|+.+
T Consensus 300 -------~i~i~d~~~~~~~~~~~~~~---------------------~~v~~~~~~~~~l-~~~~~dg~i~--vwd~~~ 348 (445)
T 2ovr_B 300 -------SIRVWDVETGNCIHTLTGHQ---------------------SLTSGMELKDNIL-VSGNADSTVK--IWDIKT 348 (445)
T ss_dssp -------CEEEEETTTCCEEEEECCCC---------------------SCEEEEEEETTEE-EEEETTSCEE--EEETTT
T ss_pred -------eEEEEECCCCCEEEEEcCCc---------------------ccEEEEEEeCCEE-EEEeCCCeEE--EEECCC
Confidence 59999987754321100000 0111344567644 5555555544 457777
Q ss_pred CcEEEecCCC--CCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 478 GELLRITPAE--SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 478 g~~~~lt~~~--~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
++........ .......++.+++.++... .. ..+.+.++.+
T Consensus 349 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~-~d---g~v~iwd~~~ 391 (445)
T 2ovr_B 349 GQCLQTLQGPNKHQSAVTCLQFNKNFVITSS-DD---GTVKLWDLKT 391 (445)
T ss_dssp CCEEEEECSTTSCSSCEEEEEECSSEEEEEE-TT---SEEEEEETTT
T ss_pred CcEEEEEccCCCCCCCEEEEEECCCEEEEEe-CC---CeEEEEECCC
Confidence 7765443321 1122334555666544433 32 2366666554
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00086 Score=70.33 Aligned_cols=116 Identities=11% Similarity=0.040 Sum_probs=61.1
Q ss_pred cCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCcccc
Q 003886 374 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 453 (789)
Q Consensus 374 ~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~ 453 (789)
....+++||+..|++.... ..+|.++|..+++... .+..+... ..+..+.++|
T Consensus 198 p~gia~d~~~g~l~v~d~~----------~~~I~~~~~~~G~~~~----------~~~~~~~~-------~~~~~~~~~p 250 (329)
T 3fvz_A 198 PHSLALVPHLDQLCVADRE----------NGRIQCFKTDTKEFVR----------EIKHASFG-------RNVFAISYIP 250 (329)
T ss_dssp EEEEEEETTTTEEEEEETT----------TTEEEEEETTTCCEEE----------EECCTTTT-------TCEEEEEEET
T ss_pred CcEEEEECCCCEEEEEECC----------CCEEEEEECCCCcEEE----------EEeccccC-------CCcceeeecC
Confidence 5668899996666554432 2479999987544311 11000000 0122345666
Q ss_pred CCCEEEEEEE-----eCCeEEEEEEECCCCcEEEecC----CCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 454 DGCTMLLSSI-----WGSSQVIISVNVSSGELLRITP----AESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 454 Dg~~l~~~~~-----~~~~~~l~~~dl~tg~~~~lt~----~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
| .++.... ......++.++..+|++..... .........++++| .++.+..... .|.++++..
T Consensus 251 -g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~~~---~I~~~~~~~ 322 (329)
T 3fvz_A 251 -G-FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAHTN---TVWKFTLTE 322 (329)
T ss_dssp -T-EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESSSC---CEEEEEEEE
T ss_pred -C-EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECCCC---EEEEEeCCc
Confidence 2 2322221 1223468888988888776532 11223445677777 5665554443 466666543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.10 E-value=3.6e-05 Score=85.53 Aligned_cols=116 Identities=10% Similarity=0.050 Sum_probs=69.7
Q ss_pred cccEEEEeCC-----CCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceee-c-CCCCEEEEE
Q 003886 154 TGASAVVPSP-----SGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISW-N-SDETLIAYV 225 (789)
Q Consensus 154 ~~~~~~~~SP-----dG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~w-S-pDg~~la~~ 225 (789)
+..-+|..|. ||++|.. .+. .+..+-+|+ +..+..+++.++.+.. ..++.+ + ||+++|+..
T Consensus 85 gd~hh~~~s~t~g~~DG~~lfV-nd~--~~~rVavIdl~t~~~~~ii~ip~g~~--------phg~~~~~~p~~~~v~~~ 153 (595)
T 1fwx_A 85 GDLHHVHMSFTEGKYDGRFLFM-NDK--ANTRVARVRCDVMKCDAILEIPNAKG--------IHGLRPQKWPRSNYVFCN 153 (595)
T ss_dssp CCBCCEEEEEETTEEEEEEEEE-EET--TTTEEEEEETTTTEEEEEEECSSCCS--------EEEEEECCSSBCSEEEEE
T ss_pred CCCCccccCCCCCCcCCCEEEE-EcC--CCCEEEEEECCCceEeeEEeCCCCCC--------CcceeeeecCCCcEEEEe
Confidence 4455688888 9998754 433 455788888 6678788777754320 146776 6 999998555
Q ss_pred eecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeC
Q 003886 226 AEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPL 305 (789)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPD 305 (789)
.+...+-. ..++.. +.++ ..+..+-++|.++.++..- ++-......+..|||
T Consensus 154 ~~~~~p~~--------~dg~~l-----------~~~~-------~~~~~vtvID~~t~~v~~q--I~Vgg~pd~~~~spd 205 (595)
T 1fwx_A 154 GEDETPLV--------NDGTNM-----------EDVA-------NYVNVFTAVDADKWEVAWQ--VLVSGNLDNCDADYE 205 (595)
T ss_dssp ECSCEESS--------CSSSST-----------TCGG-------GEEEEEEEEETTTTEEEEE--EEESSCCCCEEECSS
T ss_pred cccccccC--------CCCccc-----------cccc-------ccCceEEEEECCCCeEEEE--EEeCCCccceEECCC
Confidence 44321100 000000 1111 1346788999999876543 222224667889999
Q ss_pred CCC
Q 003886 306 NEG 308 (789)
Q Consensus 306 g~~ 308 (789)
|++
T Consensus 206 Gk~ 208 (595)
T 1fwx_A 206 GKW 208 (595)
T ss_dssp SSE
T ss_pred CCE
Confidence 996
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00034 Score=73.99 Aligned_cols=109 Identities=10% Similarity=0.000 Sum_probs=56.3
Q ss_pred cCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccc-e-eeEEeeeeccCCCCCccccccCCCCCcc
Q 003886 374 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEK-I-VDVIPVVQCAEGDCFPGLYSSSILSNPW 451 (789)
Q Consensus 374 ~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~-~-~~v~~~~~~~~~~~f~g~~~~~~~~~~w 451 (789)
....+|||||+.|++..... .+||.++........+... . ..+.. .. ... ....+++
T Consensus 197 ~~gia~s~dg~~ly~~~~~~----------~~l~~~~~~~~~~~~~~~~~~~~~~~~-~g---~~g-------~pdgia~ 255 (343)
T 2qe8_A 197 VNGIVLDAENEWLYLSPMHS----------TSMYRIKSADLSNLQLTDAELGSKIER-YS---EKP-------ICDGISI 255 (343)
T ss_dssp EEEEEECTTSCEEEEEESSC----------SEEEEEEHHHHTCTTCCHHHHHTTCEE-EE---ECC-------SCSCEEE
T ss_pred cceeEeccCCCEEEEEeCCC----------CeEEEEEHHHhcCCCCChhhhhcceEe-cc---cCC-------CCceEEE
Confidence 35689999999988876542 3688887531000000000 0 00000 00 000 1236788
Q ss_pred ccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC--CceeEEeeecCCEEEEEEe
Q 003886 452 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 452 s~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~--~~~~~~~s~dg~~l~~~~s 507 (789)
++||+ ||++... ...|+++|..+|+...+..... ......++++| .++++.+
T Consensus 256 d~~G~-l~va~~~--~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g-~l~v~~~ 309 (343)
T 2qe8_A 256 DKDHN-IYVGDLA--HSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDG-YLYFDCN 309 (343)
T ss_dssp CTTCC-EEEEEGG--GTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTS-CEEEEEC
T ss_pred CCCCC-EEEEccC--CCeEEEEECCCCCEEEEEECCceecCCeeEECCCC-cEEEEeC
Confidence 89986 6665432 3467888986677766654321 12334555554 4555544
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00012 Score=73.73 Aligned_cols=204 Identities=9% Similarity=0.020 Sum_probs=115.1
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCC
Q 003886 157 SAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (789)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~ 235 (789)
.-..|+||| + +|++....+...+..++ ..++..+.+.++... ....+.++|++|+....
T Consensus 24 ~Gl~~~~dg-~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~----------fgeGi~~~g~~lyv~t~-------- 83 (266)
T 2iwa_A 24 QGLVYAEND-T-LFESTGLYGRSSVRQVALQTGKVENIHKMDDSY----------FGEGLTLLNEKLYQVVW-------- 83 (266)
T ss_dssp EEEEECSTT-E-EEEEECSTTTCEEEEEETTTCCEEEEEECCTTC----------CEEEEEEETTEEEEEET--------
T ss_pred ccEEEeCCC-e-EEEECCCCCCCEEEEEECCCCCEEEEEecCCCc----------ceEEEEEeCCEEEEEEe--------
Confidence 456899996 4 56665433556788899 678887777765433 22234445677665532
Q ss_pred ccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEE
Q 003886 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVF 315 (789)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f 315 (789)
....++++|.+++++..- ++.. .......++||++ ++
T Consensus 84 -----------------------------------~~~~v~viD~~t~~v~~~--i~~g-~~~g~glt~Dg~~----l~- 120 (266)
T 2iwa_A 84 -----------------------------------LKNIGFIYDRRTLSNIKN--FTHQ-MKDGWGLATDGKI----LY- 120 (266)
T ss_dssp -----------------------------------TCSEEEEEETTTTEEEEE--EECC-SSSCCEEEECSSS----EE-
T ss_pred -----------------------------------cCCEEEEEECCCCcEEEE--EECC-CCCeEEEEECCCE----EE-
Confidence 236899999999876543 2211 1234568899998 55
Q ss_pred EeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCC--C---ccCcceecCCCCEEEEE
Q 003886 316 VGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESI--S---SAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 316 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~--~---~~~~p~~SpDG~~la~~ 389 (789)
+++. ...|+.+|. ++.+ ...+.-+. . ......|. || .| |.
T Consensus 121 vs~g--------------s~~l~viD~-----------------~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~l-yv 166 (266)
T 2iwa_A 121 GSDG--------------TSILYEIDP-----------------HTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EV-WA 166 (266)
T ss_dssp EECS--------------SSEEEEECT-----------------TTCCEEEEEECEETTEECCCEEEEEEE-TT-EE-EE
T ss_pred EECC--------------CCeEEEEEC-----------------CCCcEEEEEEECCCCcccccceeEEEE-CC-EE-EE
Confidence 5532 237999997 4433 33333221 1 12344667 77 44 44
Q ss_pred ecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeecc-C--CCCCccccccCCCCCccccCCCEEEEEEEeCC
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCA-E--GDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~-~--~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (789)
..-. ...|.++|..+++... .+++-... . ....+. ...+..++|+||++++|++. ..
T Consensus 167 n~~~---------~~~V~vID~~tg~V~~-------~I~~~g~~~~~~~~~~~~--~~v~nGIa~~~~~~~lfVTg--k~ 226 (266)
T 2iwa_A 167 NIWQ---------TDCIARISAKDGTLLG-------WILLPNLRKKLIDEGFRD--IDVLNGIAWDQENKRIFVTG--KL 226 (266)
T ss_dssp EETT---------SSEEEEEETTTCCEEE-------EEECHHHHHHHHHTTCTT--CCCEEEEEEETTTTEEEEEE--TT
T ss_pred ecCC---------CCeEEEEECCCCcEEE-------EEECCCcccccccccccc--cCceEEEEEcCCCCEEEEEC--CC
Confidence 4321 3479999998866421 11110000 0 000000 00123678999999988765 34
Q ss_pred eEEEEEEECCC
Q 003886 467 SQVIISVNVSS 477 (789)
Q Consensus 467 ~~~l~~~dl~t 477 (789)
...|+.+++..
T Consensus 227 ~~~v~~i~l~~ 237 (266)
T 2iwa_A 227 WPKLFEIKLHL 237 (266)
T ss_dssp CSEEEEEEEEE
T ss_pred CCeEEEEEEec
Confidence 45678887644
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.04 E-value=3.3e-05 Score=85.81 Aligned_cols=104 Identities=12% Similarity=0.098 Sum_probs=58.8
Q ss_pred ceEEEEEccC--Cce-EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchh
Q 003886 273 PSLFVININS--GEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (789)
Q Consensus 273 ~~l~v~d~~~--g~~-~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (789)
..+-|+|..+ +++ ... ++.......+.+||||++ +|+++... ..+.++|+.....
T Consensus 254 ~~V~VID~~~~~~~~~~~~--Ipvg~~PhGv~~sPDGk~-----v~V~~~~s-------------~~VsVid~~~~~~-- 311 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRY--IPIANNPHGCNMAPDKKH-----LCVAGKLS-------------PTVTVLDVTRFDA-- 311 (595)
T ss_dssp TTEEEEECSGGGCCSSEEE--EEEESSCCCEEECTTSSE-----EEEECTTS-------------SBEEEEEGGGHHH--
T ss_pred CcEEEEeCcccCCceeEEE--EecCCCceEEEEcCCCCE-----EEEeCCCC-------------CeEEEEECccccc--
Confidence 4589999987 543 323 344456778999999996 45553322 3688888731100
Q ss_pred hhhhhhcCC-CCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 350 SELELKESS-SEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 350 ~~~~~~~~~-~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
..+.+. .......++.-+ ......+|+||| . +|++..- .+++.+||+++
T Consensus 312 ---~~~~~l~~~~~v~~~v~vG-~gP~h~aF~~dG-~-aY~t~~l---------dsqV~kwdi~~ 361 (595)
T 1fwx_A 312 ---VFYENADPRSAVVAEPELG-LGPLHTAFDGRG-N-AYTSLFL---------DSQVVKWNIED 361 (595)
T ss_dssp ---HHHSCCCGGGGEEECCBCC-SCEEEEEECTTS-E-EEEEETT---------TTEEEEEEHHH
T ss_pred ---ccccccCcccceEEEcCCC-CCcceEEECCCC-e-EEEEEec---------CCcEEEEEhhH
Confidence 000000 000112233222 236778999999 4 6666542 25788899865
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00093 Score=72.26 Aligned_cols=182 Identities=8% Similarity=-0.048 Sum_probs=105.9
Q ss_pred ceEEEEEccC----CceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccch
Q 003886 273 PSLFVININS----GEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 348 (789)
Q Consensus 273 ~~l~v~d~~~----g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (789)
..|+++++++ +....+. ...-.....+++.+.++. |+++-. ....|+++++
T Consensus 134 ~~I~~~~~~g~~~~~~~~~~~-~~~~~~p~glavD~~~~~----lY~~d~--------------~~~~I~~~~~------ 188 (400)
T 3p5b_L 134 RMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSN----IYWTDS--------------VLGTVSVADT------ 188 (400)
T ss_dssp TEEEEEEC------CCCEEEE-CSSCSCEEEEEEETTTTE----EEEEET--------------TTTEEEEECT------
T ss_pred CeEEEEEcccCCCCCcceEEE-eCCCCCcccEEEEecCCc----eEEEEC--------------CCCeEEEEeC------
Confidence 5688888876 2333331 112224567788877776 666532 1236888887
Q ss_pred hhhhhhhcCCCCCCCeeecCC-CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEE
Q 003886 349 ASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (789)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~ 427 (789)
++...+.+.. ........++.|.+..|+|..... ...|+++++++...+.+...
T Consensus 189 -----------~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~---------~~~I~~~~~dG~~~~~~~~~----- 243 (400)
T 3p5b_L 189 -----------KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT---------PAKIKKGGLNGVDIYSLVTE----- 243 (400)
T ss_dssp -----------TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS---------SCCEEEEETTSCSCEEEECS-----
T ss_pred -----------CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCC---------CCEEEEEeCCCCccEEEEEC-----
Confidence 5555554433 333456678999888888776322 24699999876443221110
Q ss_pred eeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC-CceeEEeeecCCEEEEEE
Q 003886 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~-~~~~~~~s~dg~~l~~~~ 506 (789)
.-. ....+++++++++||++- .....|+++|++++..+.+..... ...-..++.+++.++++.
T Consensus 244 -------~l~-------~P~glavd~~~~~lY~aD--~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd 307 (400)
T 3p5b_L 244 -------NIQ-------WPNGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 307 (400)
T ss_dssp -------SCS-------CEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEE
T ss_pred -------CCC-------ceEEEEEEeCCCEEEEEE--CCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEec
Confidence 001 123567888889898873 344579999998776666644321 112235566788877776
Q ss_pred eCCCCCCeEEEEeeccc
Q 003886 507 SSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 507 ss~~~p~~i~~~~~~~~ 523 (789)
... ..|++++..++
T Consensus 308 ~~~---~~V~~~~~~~G 321 (400)
T 3p5b_L 308 IIN---EAIFSANRLTG 321 (400)
T ss_dssp SSS---CSEEEEESSSC
T ss_pred CCC---CeEEEEEcCCC
Confidence 433 34777774433
|
| >3tjm_A Fatty acid synthase; thioesterase domain, fatty acid synthesis, hydrolase-hydrola inhibitor complex; HET: 7FA; 1.48A {Homo sapiens} PDB: 1xkt_A | Back alignment and structure |
|---|
Probab=97.99 E-value=1.5e-05 Score=82.01 Aligned_cols=97 Identities=11% Similarity=0.011 Sum_probs=67.2
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (789)
...|.||++||.+++ ...|......|. +.|+.+|+++.. ....++++.+.+..+++.- ..
T Consensus 22 ~~~~~l~~~hg~~~~--~~~~~~~~~~L~---~~v~~~d~~~~~--------------~~~~~~~~a~~~~~~i~~~-~~ 81 (283)
T 3tjm_A 22 SSERPLFLVHPIEGS--TTVFHSLASRLS---IPTYGLQCTRAA--------------PLDSIHSLAAYYIDCIRQV-QP 81 (283)
T ss_dssp SSSCCEEEECCTTCC--SGGGHHHHHHCS---SCEEEECCCTTS--------------CCSCHHHHHHHHHHHHTTT-CC
T ss_pred CCCCeEEEECCCCCC--HHHHHHHHHhcC---ceEEEEecCCCC--------------CCCCHHHHHHHHHHHHHHh-CC
Confidence 345678899997764 566776666665 899999996411 1223555555444444431 12
Q ss_pred CccEEEEEcCccHHHHHHHHHhC---CCcee---EEEEeCCcc
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQA---PDKFV---AAAARNPLC 706 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~---p~~~~---a~v~~~pv~ 706 (789)
..++.++|||+||.++..++.+. +++++ ++|+.++..
T Consensus 82 ~~~~~l~GhS~Gg~va~~~a~~~~~~~~~v~~~~~lvlid~~~ 124 (283)
T 3tjm_A 82 EGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGSP 124 (283)
T ss_dssp SSCCEEEEETHHHHHHHHHHHHHHHHHTTSCCCCEEEEESCCT
T ss_pred CCCEEEEEECHhHHHHHHHHHHHHHcCCCCCccceEEEEcCCc
Confidence 36899999999999999998865 77888 888887653
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0016 Score=67.96 Aligned_cols=160 Identities=9% Similarity=0.022 Sum_probs=100.2
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCce-eEEEecC-CCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQL-EKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~-~~~~~~~-~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
......|.+.++.|+++... ...++.+. .++.. ..+.... ... .++++.+.+..|+++-.
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~---~~~I~r~~~~g~~~~~~~~~~~l~~p----------~glavd~~~g~ly~~d~---- 98 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVS---EEAIKRTEFNKTESVQNVVVSGLLSP----------DGLACDWLGEKLYWTDS---- 98 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETT---TTEEEEEETTSSSCCCEEEEECCSCC----------CEEEEETTTTEEEEEET----
T ss_pred ccEEEEEEeCCCEEEEEECC---CCcEEEEEccCCCceEEEEcCCCCCc----------cEEEEEcCCCeEEEEEC----
Confidence 45678899988888776433 23577776 33322 2222211 122 57888887777776521
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
....|.++++++...+.+. ...-.....++..|++..
T Consensus 99 ---------------------------------------~~~~I~~~~~dG~~~~~l~-~~~~~~P~giavdp~~g~--- 135 (318)
T 3sov_A 99 ---------------------------------------ETNRIEVSNLDGSLRKVLF-WQELDQPRAIALDPSSGF--- 135 (318)
T ss_dssp ---------------------------------------TTTEEEEEETTSCSCEEEE-CSSCSSEEEEEEEGGGTE---
T ss_pred ---------------------------------------CCCEEEEEECCCCcEEEEE-eCCCCCccEEEEeCCCCE---
Confidence 2357889998876655552 122234567889998776
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeec-CCCCCccCcceecCCCCEEEEEe
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFLVFLS 390 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-t~~~~~~~~p~~SpDG~~la~~s 390 (789)
|+++-+. ....|+++++ ++...+.+ ..........+|+|+++.|+|..
T Consensus 136 -ly~td~~-------------~~~~I~r~~~-----------------dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD 184 (318)
T 3sov_A 136 -MYWTDWG-------------EVPKIERAGM-----------------DGSSRFIIINSEIYWPNGLTLDYEEQKLYWAD 184 (318)
T ss_dssp -EEEEECS-------------SSCEEEEEET-----------------TSCSCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred -EEEEecC-------------CCCEEEEEEc-----------------CCCCeEEEEECCCCCccEEEEeccCCEEEEEE
Confidence 6665432 1237999997 44444444 33344566789999999998876
Q ss_pred cCCCCCCCCccccceeEEeecCCCC
Q 003886 391 AKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 391 ~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
.. ...|+++|+++..
T Consensus 185 ~~----------~~~I~~~d~dG~~ 199 (318)
T 3sov_A 185 AK----------LNFIHKSNLDGTN 199 (318)
T ss_dssp TT----------TTEEEEEETTSCS
T ss_pred CC----------CCEEEEEcCCCCc
Confidence 43 2479999987644
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00097 Score=70.63 Aligned_cols=160 Identities=9% Similarity=0.090 Sum_probs=103.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecC-CCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~-~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
.....++|+|.++.|+++... ...++.+. +++....+.... ... .++++.+.+..|+++..
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~---~~~I~r~~~~g~~~~~~~~~~~~~p----------~glavd~~~g~ly~~d~---- 135 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVT---LDRILRANLNGSNVEEVVSTGLESP----------GGLAVDWVHDKLYWTDS---- 135 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETT---TTEEEEEETTSCSCEEEECSSCSCC----------CEEEEETTTTEEEEEET----
T ss_pred CceEEEEEeccccEEEEEecc---CCceEEEecCCCCceEEEeCCCCCc----------cEEEEecCCCeEEEEcC----
Confidence 346788999999998776433 23577777 444444443321 112 57888888888877522
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLH 310 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~ 310 (789)
....|.++++++...+.+ .... .....+++.|++..
T Consensus 136 ---------------------------------------~~~~I~~~~~dG~~~~~l--~~~~l~~P~~iavdp~~g~-- 172 (349)
T 3v64_C 136 ---------------------------------------GTSRIEVANLDGAHRKVL--LWQSLEKPRAIALHPMEGT-- 172 (349)
T ss_dssp ---------------------------------------TTTEEEEEETTSCSCEEE--ECTTCSCEEEEEEETTTTE--
T ss_pred ---------------------------------------CCCeEEEEcCCCCceEEE--EeCCCCCcceEEEecCcCe--
Confidence 235789999887765555 2222 35668899998876
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCC-CCCccCcceecCCCCEEEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~la~~ 389 (789)
|+++-+.. ...|+++++ ++...+.+.. ........+|+|+++.|+|.
T Consensus 173 --ly~td~~~-------------~~~I~r~~~-----------------dG~~~~~~~~~~~~~PnGla~d~~~~~lY~a 220 (349)
T 3v64_C 173 --IYWTDWGN-------------TPRIEASSM-----------------DGSGRRIIADTHLFWPNGLTIDYAGRRMYWV 220 (349)
T ss_dssp --EEEEECSS-------------SCEEEEEET-----------------TSCSCEESCCSSCSCEEEEEEETTTTEEEEE
T ss_pred --EEEeccCC-------------CCEEEEEeC-----------------CCCCcEEEEECCCCCcceEEEeCCCCEEEEE
Confidence 76664321 137999998 5544444432 33446678999999999887
Q ss_pred ecCCCCCCCCccccceeEEeecCCCC
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
... ...|+++|+++..
T Consensus 221 D~~----------~~~I~~~~~dG~~ 236 (349)
T 3v64_C 221 DAK----------HHVIERANLDGSH 236 (349)
T ss_dssp ETT----------TTEEEEEETTSCS
T ss_pred ECC----------CCEEEEEeCCCCc
Confidence 643 2479999987643
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00094 Score=72.48 Aligned_cols=98 Identities=11% Similarity=0.213 Sum_probs=56.2
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEE-ecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCc
Q 003886 159 VVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 236 (789)
Q Consensus 159 ~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~-~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 236 (789)
++|+|+|+.|++..... ...++.+. .++...+.. ...... .....+++++|++..|++. ..
T Consensus 176 ia~~~~g~~l~~~d~~~--~~~I~~~d~~~~~~~~~~g~~~~~~------~~~p~~iav~p~~g~lyv~-d~-------- 238 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEG--THTVYVYMKASGWAPTRIGQLGSTF------SGKIGAVALDETEEWLYFV-DS-------- 238 (409)
T ss_dssp CEECTTSSEEEEEBSST--TCEEEEEEGGGTTCEEEEEECCTTS------CSCCCBCEECTTSSEEEEE-CT--------
T ss_pred eeEecCCCcEEEEecCC--CceEEEEEcCCCceeEEeeeccchh------cCCcEEEEEeCCCCeEEEE-EC--------
Confidence 89999999877664432 22677777 333332222 111100 0112688999976667663 21
Q ss_pred cCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC--CCCCC--ccc-eEEEeeCCCC
Q 003886 237 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG--IPKSL--SVG-QVVWAPLNEG 308 (789)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~--~~~~~--~~~-~~~wSPDg~~ 308 (789)
...|+++|++++....+.+ ..... ... .++|+|++..
T Consensus 239 -----------------------------------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ 280 (409)
T 3hrp_A 239 -----------------------------------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSN 280 (409)
T ss_dssp -----------------------------------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTE
T ss_pred -----------------------------------CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCE
Confidence 2478999998887654411 11111 123 8999997765
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00057 Score=73.57 Aligned_cols=160 Identities=9% Similarity=0.071 Sum_probs=102.6
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-ceeEEEecCC-CccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-QLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~-~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
.....++|+|.++.|+++... ...|+.+...+ ..+.+..... .. .++++.+.+..|+++..
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~---~~~I~r~~~~g~~~~~~~~~~~~~p----------~glavd~~~g~lY~~d~---- 178 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVT---LDRILRANLNGSNVEEVVSTGLESP----------GGLAVDWVHDKLYWTDS---- 178 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETT---TTEEEEEETTSCCEEEEECSSCSCC----------CCEEEETTTTEEEEEET----
T ss_pred CccEEEEEecCCCeEEEEeCC---CCcEEEEecCCCCcEEEEeCCCCCc----------cEEEEEeCCCeEEEEcC----
Confidence 356788999999998776433 23577777433 3333332211 12 57888888888877522
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLH 310 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~ 310 (789)
....|.++++++...+.+ .... .....++..|++..
T Consensus 179 ---------------------------------------~~~~I~~~~~dg~~~~~l--~~~~l~~P~giavdp~~g~-- 215 (386)
T 3v65_B 179 ---------------------------------------GTSRIEVANLDGAHRKVL--LWQSLEKPRAIALHPMEGT-- 215 (386)
T ss_dssp ---------------------------------------TTTEEEECBTTSCSCEEE--ECSSCSCEEEEEEETTTTE--
T ss_pred ---------------------------------------CCCeEEEEeCCCCceEEe--ecCCCCCCcEEEEEcCCCe--
Confidence 225788888877665555 2322 35667899998876
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecC-CCCCccCcceecCCCCEEEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~la~~ 389 (789)
|+++-+.. ...|+++++ ++...+.+. .........+|+|+++.|+|.
T Consensus 216 --ly~td~~~-------------~~~I~r~~~-----------------dG~~~~~~~~~~~~~PnGlavd~~~~~lY~a 263 (386)
T 3v65_B 216 --IYWTDWGN-------------TPRIEASSM-----------------DGSGRRIIADTHLFWPNGLTIDYAGRRMYWV 263 (386)
T ss_dssp --EEEEECSS-------------SCEEEEEET-----------------TSCSCEEEECSSCSCEEEEEEEGGGTEEEEE
T ss_pred --EEEeccCC-------------CCEEEEEeC-----------------CCCCcEEEEECCCCCeeeEEEeCCCCEEEEE
Confidence 66664321 137999998 444444443 333446778999999999887
Q ss_pred ecCCCCCCCCccccceeEEeecCCCC
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
... ...|+++|+++..
T Consensus 264 D~~----------~~~I~~~d~dG~~ 279 (386)
T 3v65_B 264 DAK----------HHVIERANLDGSH 279 (386)
T ss_dssp ETT----------TTEEEEECTTSCS
T ss_pred ECC----------CCEEEEEeCCCCe
Confidence 643 2479999987643
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0013 Score=71.87 Aligned_cols=222 Identities=15% Similarity=0.181 Sum_probs=123.4
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCcc
Q 003886 160 VPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 237 (789)
Q Consensus 160 ~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~ 237 (789)
.+++||++|+.....+ .+.+|+ .++....+. +..+.| ..+.| |++.|+..+.+
T Consensus 138 ~~~~d~~~l~~g~~dg-----~i~iwd~~~~~~~~~~~---~h~~~v------~~l~~--~~~~l~sg~~d--------- 192 (435)
T 1p22_A 138 CLQYDDQKIVSGLRDN-----TIKIWDKNTLECKRILT---GHTGSV------LCLQY--DERVIITGSSD--------- 192 (435)
T ss_dssp EEECCSSEEEEEESSS-----CEEEEESSSCCEEEEEC---CCSSCE------EEEEC--CSSEEEEEETT---------
T ss_pred EEEECCCEEEEEeCCC-----eEEEEeCCCCeEEEEEc---CCCCcE------EEEEE--CCCEEEEEcCC---------
Confidence 4566999999876654 355663 444443332 122222 56666 88877765432
Q ss_pred CCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEe
Q 003886 238 LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 317 (789)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~ 317 (789)
..|.+||+.+++..... ......+..+.|++ +. |+..+
T Consensus 193 -----------------------------------g~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~--~~----l~s~s 230 (435)
T 1p22_A 193 -----------------------------------STVRVWDVNTGEMLNTL-IHHCEAVLHLRFNN--GM----MVTCS 230 (435)
T ss_dssp -----------------------------------SCEEEEESSSCCEEEEE-CCCCSCEEEEECCT--TE----EEEEE
T ss_pred -----------------------------------CeEEEEECCCCcEEEEE-cCCCCcEEEEEEcC--CE----EEEee
Confidence 56899999988765431 22334566777763 34 55544
Q ss_pred ecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-e---eecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 318 WSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-V---VNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 318 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~---~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
....|.++|+ .++. . ..+..+...+....| ||+.|+..+.+.
T Consensus 231 ---------------~dg~i~vwd~-----------------~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg 276 (435)
T 1p22_A 231 ---------------KDRSIAVWDM-----------------ASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDR 276 (435)
T ss_dssp ---------------TTSCEEEEEC-----------------SSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTS
T ss_pred ---------------CCCcEEEEeC-----------------CCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCC
Confidence 2336888887 3222 2 345555555666666 888888776543
Q ss_pred CCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 394 ~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
.|.+||+.++......... ...+..+.| +++.+ +++..++. |..+
T Consensus 277 -----------~i~vwd~~~~~~~~~~~~~-------------------~~~v~~~~~--~~~~l-~~g~~dg~--i~iw 321 (435)
T 1p22_A 277 -----------TIKVWNTSTCEFVRTLNGH-------------------KRGIACLQY--RDRLV-VSGSSDNT--IRLW 321 (435)
T ss_dssp -----------EEEEEETTTCCEEEEEECC-------------------SSCEEEEEE--ETTEE-EEEETTSC--EEEE
T ss_pred -----------eEEEEECCcCcEEEEEcCC-------------------CCcEEEEEe--CCCEE-EEEeCCCe--EEEE
Confidence 5899998775432110000 001223334 56644 55555554 4455
Q ss_pred ECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 474 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 474 dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
|+.+++.......+.. ....++.+++.++.... .. .|.+.++..
T Consensus 322 d~~~~~~~~~~~~h~~-~v~~~~~~~~~l~sg~~-dg---~i~vwd~~~ 365 (435)
T 1p22_A 322 DIECGACLRVLEGHEE-LVRCIRFDNKRIVSGAY-DG---KIKVWDLVA 365 (435)
T ss_dssp ETTTCCEEEEECCCSS-CEEEEECCSSEEEEEET-TS---CEEEEEHHH
T ss_pred ECCCCCEEEEEeCCcC-cEEEEEecCCEEEEEeC-CC---cEEEEECCC
Confidence 7778876655444331 22345557766554443 32 366777654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0011 Score=67.75 Aligned_cols=176 Identities=15% Similarity=0.114 Sum_probs=88.3
Q ss_pred ceEEEEEccCCceE-eccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 273 PSLFVININSGEVQ-AVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 273 ~~l~v~d~~~g~~~-~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
..|+.+|. +|+.. .+. .+....+..+.++|||+. |+..+. ....|+.++.
T Consensus 56 ~~V~~~d~-~G~~~W~~~-~~~~~~~~~~~~~~dG~~----lv~~~~--------------~~~~v~~vd~--------- 106 (276)
T 3no2_A 56 KGAKMITR-DGRELWNIA-APAGCEMQTARILPDGNA----LVAWCG--------------HPSTILEVNM--------- 106 (276)
T ss_dssp SEEEEECT-TSCEEEEEE-CCTTCEEEEEEECTTSCE----EEEEES--------------TTEEEEEECT---------
T ss_pred CCEEEECC-CCCEEEEEc-CCCCccccccEECCCCCE----EEEecC--------------CCCEEEEEeC---------
Confidence 34777787 45433 332 222334567889999985 444331 0124666664
Q ss_pred hhhhcCCCCCCCeeecCC------CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceee
Q 003886 352 LELKESSSEDLPVVNLTE------SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 425 (789)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~------~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~ 425 (789)
++..+..+.- ........++++||+.|+..... ..++.+|.+ |+.. +.
T Consensus 107 --------~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~-----------~~v~~~d~~-G~~~------w~ 160 (276)
T 3no2_A 107 --------KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFAT-----------SEVREIAPN-GQLL------NS 160 (276)
T ss_dssp --------TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTT-----------TEEEEECTT-SCEE------EE
T ss_pred --------CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCC-----------CEEEEECCC-CCEE------EE
Confidence 3332222211 01123345789999987644322 368999976 4432 11
Q ss_pred EEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC---CC-C---ceeEEeeec
Q 003886 426 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA---ES-N---FSWSLLTLD 498 (789)
Q Consensus 426 v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~---~~-~---~~~~~~s~d 498 (789)
. ... . ........++|+.++ ..... ..|+.+|.++|++..-... .+ . .......++
T Consensus 161 ~----~~~---~-------~~~~~~~~~~g~~~v-~~~~~--~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~ 223 (276)
T 3no2_A 161 V----KLS---G-------TPFSSAFLDNGDCLV-ACGDA--HCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQN 223 (276)
T ss_dssp E----ECS---S-------CCCEEEECTTSCEEE-ECBTT--SEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTT
T ss_pred E----ECC---C-------CccceeEcCCCCEEE-EeCCC--CeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCC
Confidence 0 000 0 122345667887554 33322 3589999988887543221 11 1 122234456
Q ss_pred CCEEEEEEeCCC------CCCeEEEEee
Q 003886 499 GDNIIAVSSSPV------DVPQVKYGYF 520 (789)
Q Consensus 499 g~~l~~~~ss~~------~p~~i~~~~~ 520 (789)
|+.++..+.+.. ...+++.++.
T Consensus 224 G~i~v~~~~g~~~~~~~~~~~~~~~~~~ 251 (276)
T 3no2_A 224 GGLYICNWQGHDREAGKGKHPQLVEIDS 251 (276)
T ss_dssp SCEEEEEECTTCTTGGGSCCCSEEEECT
T ss_pred CCEEEEeccCccccccccCCceEEEECC
Confidence 665555443332 3456666653
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0027 Score=66.19 Aligned_cols=161 Identities=11% Similarity=0.102 Sum_probs=99.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-----ceeEEEecC-CCccccccCCCcccceeecCCCCEEEEEee
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-----QLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~-~~~~g~v~~d~~~~~~~wSpDg~~la~~~~ 227 (789)
.....++|+|+++.|+++... ...++.+...+ ....++... ... .++++.+.++.|+++..
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~---~~~I~~~~~~g~~~~~~~~~~~~~~~~~p----------~glavd~~~~~ly~~d~ 96 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLS---QRMICSTQLDRAHGVSSYDTVISRDIQAP----------DGLAVDWIHSNIYWTDS 96 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETT---TTEEEEEEC--------CEEEECSSCSCC----------CEEEEETTTTEEEEEET
T ss_pred CceEEEEEEeCCCEEEEEECC---CCcEEEEECCCCCCCcccEEEEeCCCCCc----------CEEEEeecCCeEEEEEC
Confidence 456789999999998776543 23577777333 222222211 112 57888887777766522
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003886 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (789)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (789)
....|.++++++...+.+. ...-.....++..|++.
T Consensus 97 -------------------------------------------~~~~I~~~~~~g~~~~~~~-~~~~~~P~~iavdp~~g 132 (316)
T 1ijq_A 97 -------------------------------------------VLGTVSVADTKGVKRKTLF-RENGSKPRAIVVDPVHG 132 (316)
T ss_dssp -------------------------------------------TTTEEEEEETTSSSEEEEE-ECTTCCEEEEEEETTTT
T ss_pred -------------------------------------------CCCEEEEEeCCCCceEEEE-ECCCCCcceEEeCCCCC
Confidence 2357888998876665552 11223556788999887
Q ss_pred CCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecC-CCCCccCcceecCCCCEE
Q 003886 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFL 386 (789)
Q Consensus 308 ~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~l 386 (789)
. |+++.+.. ...|+++++ ++...+.+. .........+|+|+++.|
T Consensus 133 ~----ly~~d~~~-------------~~~I~~~~~-----------------dG~~~~~~~~~~~~~P~gla~d~~~~~l 178 (316)
T 1ijq_A 133 F----MYWTDWGT-------------PAKIKKGGL-----------------NGVDIYSLVTENIQWPNGITLDLLSGRL 178 (316)
T ss_dssp E----EEEEECSS-------------SCEEEEEET-----------------TSCCEEEEECSSCSCEEEEEEETTTTEE
T ss_pred E----EEEEccCC-------------CCeEEEEcC-----------------CCCCeEEEEECCCCCceEEEEeccCCEE
Confidence 6 66654211 136999997 444444442 233446678999999999
Q ss_pred EEEecCCCCCCCCccccceeEEeecCCCC
Q 003886 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 387 a~~s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
+|..... .+|+++|+++..
T Consensus 179 Y~~D~~~----------~~I~~~d~dg~~ 197 (316)
T 1ijq_A 179 YWVDSKL----------HSISSIDVNGGN 197 (316)
T ss_dssp EEEETTT----------TEEEEEETTSCS
T ss_pred EEEECCC----------CeEEEEecCCCc
Confidence 8876432 479999987633
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00051 Score=75.14 Aligned_cols=221 Identities=10% Similarity=0.001 Sum_probs=115.6
Q ss_pred CCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe
Q 003886 106 GNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW 185 (789)
Q Consensus 106 pdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~ 185 (789)
+||+.++.. ...+.+.++++.+ +.....+.... +.+...+| ||+.|+.....+ .+.+|
T Consensus 141 ~d~~~l~~g---------~~dg~i~iwd~~~-~~~~~~~~~h~-----~~v~~l~~--~~~~l~sg~~dg-----~i~vw 198 (435)
T 1p22_A 141 YDDQKIVSG---------LRDNTIKIWDKNT-LECKRILTGHT-----GSVLCLQY--DERVIITGSSDS-----TVRVW 198 (435)
T ss_dssp CCSSEEEEE---------ESSSCEEEEESSS-CCEEEEECCCS-----SCEEEEEC--CSSEEEEEETTS-----CEEEE
T ss_pred ECCCEEEEE---------eCCCeEEEEeCCC-CeEEEEEcCCC-----CcEEEEEE--CCCEEEEEcCCC-----eEEEE
Confidence 466665443 2344566666532 22222232222 34666666 888888776543 35566
Q ss_pred --cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCC---CCCcCCCCCCCcceee
Q 003886 186 --SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG---SSDKDCNSWKGQGDWE 260 (789)
Q Consensus 186 --~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 260 (789)
..++....+.. ..+.| ..+.|++ +.|+..+.+.... .|+....... .....+........|
T Consensus 199 d~~~~~~~~~~~~---h~~~v------~~l~~~~--~~l~s~s~dg~i~--vwd~~~~~~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 199 DVNTGEMLNTLIH---HCEAV------LHLRFNN--GMMVTCSKDRSIA--VWDMASPTDITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp ESSSCCEEEEECC---CCSCE------EEEECCT--TEEEEEETTSCEE--EEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred ECCCCcEEEEEcC---CCCcE------EEEEEcC--CEEEEeeCCCcEE--EEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence 34444333321 11222 6777864 4666666554322 2332211111 111122222222333
Q ss_pred CCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEE
Q 003886 261 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (789)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (789)
+....+++..+..|.+||+.+++..... ......+..+.| +++. |+..+ .+..|.++
T Consensus 265 -~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~v~~~~~--~~~~----l~~g~---------------~dg~i~iw 321 (435)
T 1p22_A 265 -DDKYIVSASGDRTIKVWNTSTCEFVRTL-NGHKRGIACLQY--RDRL----VVSGS---------------SDNTIRLW 321 (435)
T ss_dssp -ETTEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEE--ETTE----EEEEE---------------TTSCEEEE
T ss_pred -CCCEEEEEeCCCeEEEEECCcCcEEEEE-cCCCCcEEEEEe--CCCE----EEEEe---------------CCCeEEEE
Confidence 2233445556789999999988765431 122234455555 5554 55444 23368888
Q ss_pred ecccccchhhhhhhhcCCCCCC-CeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCC
Q 003886 341 RVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
|+ .++ ....+..+...+....| ||+.|+..+.+. .|.+||+.++.
T Consensus 322 d~-----------------~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg-----------~i~vwd~~~~~ 367 (435)
T 1p22_A 322 DI-----------------ECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDG-----------KIKVWDLVAAL 367 (435)
T ss_dssp ET-----------------TTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTS-----------CEEEEEHHHHT
T ss_pred EC-----------------CCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCC-----------cEEEEECCCCC
Confidence 88 434 34556656666666666 888887776543 58999986544
|
| >4ebb_A Dipeptidyl peptidase 2; hydrolase; HET: MSE NAG; 2.00A {Homo sapiens} PDB: 3jyh_A* 3n0t_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00018 Score=79.22 Aligned_cols=111 Identities=17% Similarity=0.163 Sum_probs=76.1
Q ss_pred CCCcEEEEEcCCCCCCCchhhHH----HHHHHHHCCcEEEEEcCCCCCCCCchhh------c--cCCCCCCcccHHHHHH
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSK----SLAFLSSVGYSLLIVNYRGSLGFGEEAL------Q--SLPGKVGSQDVNDVLT 657 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~----~~~~la~~Gy~V~~~d~rGs~G~G~~~~------~--~~~~~~~~~~~~D~~~ 657 (789)
...|++|++-| -+. ...+.. ......+.|-.+|..++|= ||++.. + .+.-..-.+.++|++.
T Consensus 41 ~~gPIfl~~gG-Eg~--~~~~~~~~g~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~st~~~nL~yLt~eQALaD~a~ 114 (472)
T 4ebb_A 41 GEGPIFFYTGN-EGD--VWAFANNSAFVAELAAERGALLVFAEHRY---YGKSLPFGAQSTQRGHTELLTVEQALADFAE 114 (472)
T ss_dssp TTCCEEEEECC-SSC--HHHHHHHCHHHHHHHHHHTCEEEEECCTT---STTCCTTGGGGGSTTSCTTCSHHHHHHHHHH
T ss_pred CCCcEEEEECC-Ccc--ccccccCccHHHHHHHHhCCeEEEEeccc---ccCCcCCCCCCccccccccCCHHHHHHHHHH
Confidence 34788888844 322 222211 2233446788999999996 555532 1 1111122344788888
Q ss_pred HHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 658 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 658 ~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
.++++...-.....+++++|+||||++++|+-.++|+.|.++++.+++.
T Consensus 115 fi~~~k~~~~~~~~pwI~~GGSY~G~LaAW~R~kYP~lv~ga~ASSApv 163 (472)
T 4ebb_A 115 LLRALRRDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPV 163 (472)
T ss_dssp HHHHHHHHTTCTTCCEEEEEETHHHHHHHHHHHHCTTTCSEEEEETCCT
T ss_pred HHHHHHhhcCCCCCCEEEEccCccchhhHHHHhhCCCeEEEEEecccce
Confidence 8888877644556799999999999999999999999999999887654
|
| >1whs_A Serine carboxypeptidase II; HET: NAG FUC; 2.00A {Triticum aestivum} SCOP: c.69.1.5 PDB: 1bcs_A* 1bcr_A* 1wht_A* 3sc2_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=4.3e-05 Score=75.81 Aligned_cols=137 Identities=17% Similarity=0.169 Sum_probs=84.9
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch-hhHHH----------------HHHHHHCCcEEEEEcCCCCC
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKS----------------LAFLSSVGYSLLIVNYRGSL 633 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~~~~----------------~~~la~~Gy~V~~~d~rGs~ 633 (789)
..+..+..|++...+ .....|+|++++|||++.... ..... ..-| .+-..|+.+|.+-..
T Consensus 29 ~~~~~lFywf~es~~--~~~~~Pl~lwlnGGPGcSS~~~g~~~E~GP~~v~~~~~~l~~N~~sW-~~~anvlfiDqPvGt 105 (255)
T 1whs_A 29 GAGRSLFYLLQEAPE--DAQPAPLVLWLNGGPGCSSVAYGASEELGAFRVKPRGAGLVLNEYRW-NKVANVLFLDSPAGV 105 (255)
T ss_dssp TTTEEEEEEEECCCG--GGCSCCEEEEECCTTTBCTTTTHHHHTSSSEEECGGGCCEEECTTCG-GGTSEEEEECCSTTS
T ss_pred CCCcEEEEEEEEecC--CCCCCCEEEEECCCCchHHHHHHHHhccCCeEecCCCCeeeeCcccc-cccCCEEEEecCCCC
Confidence 356788888887642 345789999999999974332 11000 0011 122689999964336
Q ss_pred CCCchhhccCCCCCC-cccHHHHHHHHHHHHHc-CCCCCccEEEEEcCccHHHHHHHHHhC------CCceeEEEEeCCc
Q 003886 634 GFGEEALQSLPGKVG-SQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPL 705 (789)
Q Consensus 634 G~G~~~~~~~~~~~~-~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~~~~~------p~~~~a~v~~~pv 705 (789)
|+............+ ....+|+...++...++ +.....++.|+|.||||..+..+|..- .-.++++++.+|+
T Consensus 106 GfSy~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yi~GESYgG~yvp~la~~i~~~n~~~inLkGi~ign~~ 185 (255)
T 1whs_A 106 GFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPVINLKGFMVGNGL 185 (255)
T ss_dssp TTCEESSGGGGGSCCHHHHHHHHHHHHHHHHHHCGGGTTCEEEEEEEETHHHHHHHHHHHHHHHTCSSCEEEEEEEEEEC
T ss_pred ccCCCcCccccccCCHHHHHHHHHHHHHHHHHhCHHhcCCCEEEEecCCccccHHHHHHHHHHcCCcccccceEEecCCc
Confidence 665433211000111 22356666666655553 445567899999999999888776531 2368999999999
Q ss_pred cchhh
Q 003886 706 CNLAL 710 (789)
Q Consensus 706 ~~~~~ 710 (789)
+|...
T Consensus 186 ~d~~~ 190 (255)
T 1whs_A 186 IDDYH 190 (255)
T ss_dssp CBHHH
T ss_pred cCHHH
Confidence 98643
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0017 Score=70.16 Aligned_cols=162 Identities=10% Similarity=0.115 Sum_probs=100.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-----ceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeec
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-----QLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~ 228 (789)
.....++|++.++.|+++.... ..|+.+...+ ....++.. ... .-.++++.+.++.|+++-.
T Consensus 112 ~~~~~l~~d~~~~~lywsD~~~---~~I~~~~~~g~~~~~~~~~~~~~--~~~-------~p~glavD~~~~~lY~~d~- 178 (400)
T 3p5b_L 112 RNVVALDTEVASNRIYWSDLSQ---RMICSTQLDRAHGVSSYDTVISR--DIQ-------APDGLAVDWIHSNIYWTDS- 178 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTT---TEEEEEEC------CCCEEEECS--SCS-------CEEEEEEETTTTEEEEEET-
T ss_pred CcceEEeeeeccCceEEEecCC---CeEEEEEcccCCCCCcceEEEeC--CCC-------CcccEEEEecCCceEEEEC-
Confidence 4577889999999987764432 3566666332 22233221 111 0146778777777766521
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC-CccceEEEeeCCC
Q 003886 229 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNE 307 (789)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~ 307 (789)
....|.+++++++..+.+ .... .....++..|.+.
T Consensus 179 ------------------------------------------~~~~I~~~~~~g~~~~~l--~~~~~~~P~~iavdp~~g 214 (400)
T 3p5b_L 179 ------------------------------------------VLGTVSVADTKGVKRKTL--FRENGSKPRAIVVDPVHG 214 (400)
T ss_dssp ------------------------------------------TTTEEEEECTTTCSEEEE--EECSSCCEEEEEEETTTT
T ss_pred ------------------------------------------CCCeEEEEeCCCCceEEE--EeCCCCCcceEEEecccC
Confidence 235788999888776655 2322 2466788999877
Q ss_pred CCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeec-CCCCCccCcceecCCCCEE
Q 003886 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFL 386 (789)
Q Consensus 308 ~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-t~~~~~~~~p~~SpDG~~l 386 (789)
. |+++-+. ....|+++++ ++...+.+ ..........+++|+++.|
T Consensus 215 ~----ly~td~~-------------~~~~I~~~~~-----------------dG~~~~~~~~~~l~~P~glavd~~~~~l 260 (400)
T 3p5b_L 215 F----MYWTDWG-------------TPAKIKKGGL-----------------NGVDIYSLVTENIQWPNGITLDLLSGRL 260 (400)
T ss_dssp E----EEEEECS-------------SSCCEEEEET-----------------TSCSCEEEECSSCSCEEEEEEETTTTEE
T ss_pred e----EEEEeCC-------------CCCEEEEEeC-----------------CCCccEEEEECCCCceEEEEEEeCCCEE
Confidence 6 6665432 1236999998 55444444 3333456778999999999
Q ss_pred EEEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 387 a~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
+|.... ...|+++|+++...
T Consensus 261 Y~aD~~----------~~~I~~~d~dG~~~ 280 (400)
T 3p5b_L 261 YWVDSK----------LHSISSIDVNGGNR 280 (400)
T ss_dssp EEEETT----------TTEEEEEETTSCCC
T ss_pred EEEECC----------CCEEEEEeCCCCcc
Confidence 887643 24799999876443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0018 Score=67.55 Aligned_cols=181 Identities=11% Similarity=0.005 Sum_probs=106.0
Q ss_pred ceEEEEEccCCce-EeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 273 PSLFVININSGEV-QAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 273 ~~l~v~d~~~g~~-~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
..|++++++++.. +.+. ...-.....+++.+.+.. |+++-. ....|+++++
T Consensus 57 ~~I~r~~~~g~~~~~~~~-~~~l~~p~glavd~~~g~----ly~~d~--------------~~~~I~~~~~--------- 108 (318)
T 3sov_A 57 EAIKRTEFNKTESVQNVV-VSGLLSPDGLACDWLGEK----LYWTDS--------------ETNRIEVSNL--------- 108 (318)
T ss_dssp TEEEEEETTSSSCCCEEE-EECCSCCCEEEEETTTTE----EEEEET--------------TTTEEEEEET---------
T ss_pred CcEEEEEccCCCceEEEE-cCCCCCccEEEEEcCCCe----EEEEEC--------------CCCEEEEEEC---------
Confidence 5788888887642 1220 111124567888887776 666532 1236888887
Q ss_pred hhhhcCCCCCCCeeecC-CCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeee
Q 003886 352 LELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (789)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~ 430 (789)
++...+.+. .........++.|++..|+|..... ..+|+++++++...+.+...
T Consensus 109 --------dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~---------~~~I~r~~~dG~~~~~~~~~-------- 163 (318)
T 3sov_A 109 --------DGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGE---------VPKIERAGMDGSSRFIIINS-------- 163 (318)
T ss_dssp --------TSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSS---------SCEEEEEETTSCSCEEEECS--------
T ss_pred --------CCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCC---------CCEEEEEEcCCCCeEEEEEC--------
Confidence 554444443 3334456778899888887765321 24799999876433211100
Q ss_pred eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCC
Q 003886 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPV 510 (789)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~ 510 (789)
+-. ....++|++++++||++- .....|+++|++++..+.+..... ..-..++.+++.++.+..
T Consensus 164 ----~l~-------~Pnglavd~~~~~lY~aD--~~~~~I~~~d~dG~~~~~~~~~~~-~~P~glav~~~~lywtd~--- 226 (318)
T 3sov_A 164 ----EIY-------WPNGLTLDYEEQKLYWAD--AKLNFIHKSNLDGTNRQAVVKGSL-PHPFALTLFEDILYWTDW--- 226 (318)
T ss_dssp ----SCS-------CEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEECSCC-SCEEEEEEETTEEEEEET---
T ss_pred ----CCC-------CccEEEEeccCCEEEEEE--CCCCEEEEEcCCCCceEEEecCCC-CCceEEEEeCCEEEEEec---
Confidence 001 123568999899998874 345579999998766665543221 111245556777777643
Q ss_pred CCCeEEEEeeccc
Q 003886 511 DVPQVKYGYFVDK 523 (789)
Q Consensus 511 ~p~~i~~~~~~~~ 523 (789)
....|++++..++
T Consensus 227 ~~~~V~~~~~~~G 239 (318)
T 3sov_A 227 STHSILACNKYTG 239 (318)
T ss_dssp TTTEEEEEETTTC
T ss_pred CCCeEEEEECCCC
Confidence 2345777776433
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0037 Score=65.12 Aligned_cols=194 Identities=11% Similarity=-0.027 Sum_probs=97.0
Q ss_pred eEEEEEccCCceEeccCCCC---CCccceEEEee-CCCCCccEEEEEeecCC--ceee-eeeeeccCCcceEEEeccccc
Q 003886 274 SLFVININSGEVQAVKGIPK---SLSVGQVVWAP-LNEGLHQYLVFVGWSSE--TRKL-GIKYCYNRPCALYAVRVSLYK 346 (789)
Q Consensus 274 ~l~v~d~~~g~~~~l~~~~~---~~~~~~~~wSP-Dg~~~~~~l~f~~~~~~--~~~~-g~~~~~~~~~~l~~~d~~~~~ 346 (789)
.|+++|.++++.+.+..... -.....+++.| ||+ |+++..... .+.. ...........|+++|.
T Consensus 102 ~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~-----l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~---- 172 (322)
T 2fp8_A 102 HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI-----VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP---- 172 (322)
T ss_dssp EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC-----EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET----
T ss_pred CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE-----EEEECCcccccccccceehcccCCCceEEEEeC----
Confidence 37777877766554421111 11345788999 885 666542210 0000 00000011246999987
Q ss_pred chhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeE
Q 003886 347 SEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (789)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v 426 (789)
++++.+.+..........+|+|||+.|++.... ..+|+++++.+.... ....+
T Consensus 173 -------------~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~----------~~~I~~~~~~~~~~~----~~~~~ 225 (322)
T 2fp8_A 173 -------------STKETTLLLKELHVPGGAEVSADSSFVLVAEFL----------SHQIVKYWLEGPKKG----TAEVL 225 (322)
T ss_dssp -------------TTTEEEEEEEEESCCCEEEECTTSSEEEEEEGG----------GTEEEEEESSSTTTT----CEEEE
T ss_pred -------------CCCEEEEeccCCccCcceEECCCCCEEEEEeCC----------CCeEEEEECCCCcCC----ccceE
Confidence 555554443332335568999999987665432 247999998753211 11111
Q ss_pred EeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe--------CCeEEEEEEECCCCcEEEecCCCCC-ce-eEEee
Q 003886 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW--------GSSQVIISVNVSSGELLRITPAESN-FS-WSLLT 496 (789)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~--------~~~~~l~~~dl~tg~~~~lt~~~~~-~~-~~~~s 496 (789)
.. .+| ...+.+.++|+ |+++... .....|+++|.++..+..+....+. .. ...+.
T Consensus 226 ~~---------~~g-----P~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~ 290 (322)
T 2fp8_A 226 VK---------IPN-----PGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQ 290 (322)
T ss_dssp EE---------CSS-----EEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEE
T ss_pred Ee---------CCC-----CCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCccccceEEE
Confidence 11 011 12456788887 7666544 2246789999854334444433221 11 11222
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 497 LDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 497 ~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
.+++.|++.... ...|.++++.
T Consensus 291 ~~~g~L~v~~~~---~~~i~~~~~~ 312 (322)
T 2fp8_A 291 EHDGLLYIGTLF---HGSVGILVYD 312 (322)
T ss_dssp EETTEEEEECSS---CSEEEEEEC-
T ss_pred EeCCEEEEeecC---CCceEEEecc
Confidence 345666655432 2346666654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.002 Score=64.08 Aligned_cols=178 Identities=14% Similarity=0.175 Sum_probs=102.1
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
...|.++|+++|++..-. +-+........+++|+. |+...|. ...++++|.
T Consensus 64 ~S~v~~vD~~Tgkv~~~~--~l~~~~FgeGit~~g~~----ly~ltw~--------------~~~v~v~D~--------- 114 (262)
T 3nol_A 64 RSSIRKVDIESGKTLQQI--ELGKRYFGEGISDWKDK----IVGLTWK--------------NGLGFVWNI--------- 114 (262)
T ss_dssp EEEEEEECTTTCCEEEEE--ECCTTCCEEEEEEETTE----EEEEESS--------------SSEEEEEET---------
T ss_pred CceEEEEECCCCcEEEEE--ecCCccceeEEEEeCCE----EEEEEee--------------CCEEEEEEC---------
Confidence 368999999999876542 22222333446677887 7766653 237999998
Q ss_pred hhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeee
Q 003886 352 LELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (789)
Q Consensus 352 ~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~ 430 (789)
++.+ ..++.-.. ....+++||+.|+. ++. ..+|+.+|..+.+.. .-+.+.
T Consensus 115 --------~t~~~~~ti~~~~---eG~glt~dg~~L~~-SdG----------s~~i~~iDp~T~~v~-------~~I~V~ 165 (262)
T 3nol_A 115 --------RNLRQVRSFNYDG---EGWGLTHNDQYLIM-SDG----------TPVLRFLDPESLTPV-------RTITVT 165 (262)
T ss_dssp --------TTCCEEEEEECSS---CCCCEEECSSCEEE-CCS----------SSEEEEECTTTCSEE-------EEEECE
T ss_pred --------ccCcEEEEEECCC---CceEEecCCCEEEE-ECC----------CCeEEEEcCCCCeEE-------EEEEec
Confidence 4444 33443321 34567789987654 432 247999998775432 111111
Q ss_pred eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC-------------CceeEEeee
Q 003886 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-------------NFSWSLLTL 497 (789)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~-------------~~~~~~~s~ 497 (789)
.... .+ ..+..+.|. || +||+. .+. ...|.++|+.+|++.......+ .....++++
T Consensus 166 ~~g~--~~-----~~lNELe~~-~G-~lyan-~w~-~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp 234 (262)
T 3nol_A 166 AHGE--EL-----PELNELEWV-DG-EIFAN-VWQ-TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK 234 (262)
T ss_dssp ETTE--EC-----CCEEEEEEE-TT-EEEEE-ETT-SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET
T ss_pred cCCc--cc-----cccceeEEE-CC-EEEEE-Ecc-CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC
Confidence 1000 00 011124565 66 47643 333 3479999999999876433211 123457778
Q ss_pred cCCEEEEEEeCCCCCCeEEEEeec
Q 003886 498 DGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 498 dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
+++.|+.+.-.. |.+|.+.+.
T Consensus 235 ~~~~lfVTGK~W---p~~~ev~~~ 255 (262)
T 3nol_A 235 EHHRLFVTGKLW---PKVFEITLT 255 (262)
T ss_dssp TTTEEEEEETTC---SEEEEEEEE
T ss_pred CCCEEEEECCCC---CceEEEEEe
Confidence 888877777555 446666553
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0026 Score=64.10 Aligned_cols=174 Identities=5% Similarity=-0.053 Sum_probs=91.6
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
..|+++|..++....+. ......+..++++|||+ |+++.. ...|+++|.
T Consensus 46 ~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~-----l~v~~~---------------~~~i~~~d~---------- 94 (270)
T 1rwi_B 46 GRVVKLATGSTGTTVLP-FNGLYQPQGLAVDGAGT-----VYVTDF---------------NNRVVTLAA---------- 94 (270)
T ss_dssp CEEEEECC-----EECC-CCSCCSCCCEEECTTCC-----EEEEET---------------TTEEEEECT----------
T ss_pred CcEEEecCCCcccceEe-eCCcCCcceeEECCCCC-----EEEEcC---------------CCEEEEEeC----------
Confidence 56888887766555442 12223567889999986 454431 226888887
Q ss_pred hhhcCCCCCCCeeecCCC-CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeee
Q 003886 353 ELKESSSEDLPVVNLTES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 431 (789)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~-~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~ 431 (789)
++.....+... .......+++|||+ |++.... ...|++++..+........
T Consensus 95 -------~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~----------~~~i~~~~~~~~~~~~~~~---------- 146 (270)
T 1rwi_B 95 -------GSNNQTVLPFDGLNYPEGLAVDTQGA-VYVADRG----------NNRVVKLAAGSKTQTVLPF---------- 146 (270)
T ss_dssp -------TCSCCEECCCCSCSSEEEEEECTTCC-EEEEEGG----------GTEEEEECTTCCSCEECCC----------
T ss_pred -------CCceEeeeecCCcCCCcceEECCCCC-EEEEECC----------CCEEEEEECCCceeEeecc----------
Confidence 44444433322 23456788999997 4443322 2368888643321110000
Q ss_pred ccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC-CCceeEEeeecCCEEEEEEeCCC
Q 003886 432 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAVSSSPV 510 (789)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~~ss~~ 510 (789)
..+ ..+..+.+++||+ ||++... ...|+++|.+++......... .......++++| .++++....
T Consensus 147 ----~~~-----~~p~~i~~~~~g~-l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~- 212 (270)
T 1rwi_B 147 ----TGL-----NDPDGVAVDNSGN-VYVTDTD--NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYVTEHNT- 212 (270)
T ss_dssp ----CSC-----CSCCCEEECTTCC-EEEEEGG--GTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEEEETTT-
T ss_pred ----ccC-----CCceeEEEeCCCC-EEEEECC--CCEEEEEecCCCceEeecccCCCCceEEEECCCC-CEEEEECCC-
Confidence 000 1234677889997 7665432 346888898777765543332 222334555555 455444332
Q ss_pred CCCeEEEEeec
Q 003886 511 DVPQVKYGYFV 521 (789)
Q Consensus 511 ~p~~i~~~~~~ 521 (789)
..|++++..
T Consensus 213 --~~v~~~~~~ 221 (270)
T 1rwi_B 213 --NQVVKLLAG 221 (270)
T ss_dssp --SCEEEECTT
T ss_pred --CcEEEEcCC
Confidence 236666654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00022 Score=82.97 Aligned_cols=180 Identities=9% Similarity=-0.013 Sum_probs=102.2
Q ss_pred ceEEEEEccC----CceEeccCCCCC-CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc
Q 003886 273 PSLFVININS----GEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (789)
Q Consensus 273 ~~l~v~d~~~----g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (789)
..|+++++++ .....+ +... .....+++.+.++. |+++- . ....|+++++
T Consensus 428 ~~I~~~~~~g~~~~~~~~~~--i~~~~~~P~glavD~~~g~----LY~tD-~-------------~~~~I~v~d~----- 482 (699)
T 1n7d_A 428 RMICSTQLDRAHGVSSYDTV--ISRDIQAPDGLAVDWIHSN----IYWTD-S-------------VLGTVSVADT----- 482 (699)
T ss_dssp TSBEEEESCCCCC-CCCCCB--CCSCC--CCCEECCCSSSB----CEECC-T-------------TTSCEEEEBS-----
T ss_pred CeEEEEecCCCCCCcceEEE--EeCCCCCcceEEEEeeCCc----EEEEe-c-------------cCCeEEEEec-----
Confidence 4678888775 233333 2222 23456777776766 55542 1 1236889987
Q ss_pred hhhhhhhhcCCCCCCCeeecCC-CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeE
Q 003886 348 EASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v 426 (789)
++...+.|.. ........+++|++.+|+|..... ..+|+++++.+...+.+...
T Consensus 483 ------------dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~---------~~~I~~~~~dG~~~~~l~~~---- 537 (699)
T 1n7d_A 483 ------------KGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT---------PAKIKKGGLNGVDIYSLVTE---- 537 (699)
T ss_dssp ------------SSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSS---------SCCEEBCCSSSCCCCEESCS----
T ss_pred ------------CCCceEEEEeCCCCCcceEEEccCCCcEEEcccCC---------CCeEEEEeCCCCCeeEEEeC----
Confidence 5555555543 234567789999888887765321 24688888765433211100
Q ss_pred EeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC-CceeEEeeecCCEEEEE
Q 003886 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAV 505 (789)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~-~~~~~~~s~dg~~l~~~ 505 (789)
... ....++|++++++||++- .+...|++++++++..+.+..... ...-..++.+++.|+++
T Consensus 538 --------~l~-------~PnGlavd~~~~~LY~aD--~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywt 600 (699)
T 1n7d_A 538 --------NIQ-------WPNGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWT 600 (699)
T ss_dssp --------SCS-------SCCCEEECTTTCCEEEEE--TTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEE
T ss_pred --------CCC-------CccEEEEeccCCEEEEEe--cCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEE
Confidence 001 134678999988898864 344578899987766665543221 11112455567777666
Q ss_pred EeCCCCCCeEEEEeecc
Q 003886 506 SSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 506 ~ss~~~p~~i~~~~~~~ 522 (789)
.... ..|.+++..+
T Consensus 601 d~~~---~~V~~~d~~~ 614 (699)
T 1n7d_A 601 DIIN---EAIFSANRLT 614 (699)
T ss_dssp CSTT---TCEEEEETTT
T ss_pred eCCC---CeEEEEEccC
Confidence 5332 3477777543
|
| >1ivy_A Human protective protein; carboxypeptidase, serine carboxypeptidase, protective protei glycoprotein, zymogen; HET: NAG NDG; 2.20A {Homo sapiens} SCOP: c.69.1.5 | Back alignment and structure |
|---|
Probab=97.70 E-value=6.6e-05 Score=81.85 Aligned_cols=130 Identities=20% Similarity=0.248 Sum_probs=79.1
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHH---------HHH------HHCCcEEEEEcC-CCCCCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL---------AFL------SSVGYSLLIVNY-RGSLGF 635 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~---------~~l------a~~Gy~V~~~d~-rGs~G~ 635 (789)
++..+..|++...+ .....|+|+++||||++.......... ..+ -.+-..|+.+|. +| .|+
T Consensus 30 ~~~~lfy~f~~s~~--~~~~~Pl~lwlnGGPG~Ss~~g~~~e~GP~~~~~~~~~l~~n~~sw~~~~~~lfiDqP~G-tGf 106 (452)
T 1ivy_A 30 GSKHLHYWFVESQK--DPENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAG-VGF 106 (452)
T ss_dssp TTEEEEEEEECCSS--CGGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCGGGSSEEEEECCSTT-STT
T ss_pred CCCeEEEEEEEcCC--CCCCCCEEEEECCCCcHHHHHHHHHhcCCcEEeCCCceeeeCCCcccccccEEEEecCCC-CCc
Confidence 35678888876542 335689999999999964321110000 000 013468999995 56 566
Q ss_pred CchhhccCCCCCCc---ccHHHHHHHHHHHHH-cCCCCCccEEEEEcCccHHHHHHHHHh----CCCceeEEEEeCCccc
Q 003886 636 GEEALQSLPGKVGS---QDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQ----APDKFVAAAARNPLCN 707 (789)
Q Consensus 636 G~~~~~~~~~~~~~---~~~~D~~~~i~~l~~-~~~~d~~rv~l~G~S~GG~~a~~~~~~----~p~~~~a~v~~~pv~~ 707 (789)
.... ...+.. ...+|...++...++ .+.....++.|+|+||||..+..+|.. .+-.++++++.+|+++
T Consensus 107 S~~~----~~~~~~~~~~~a~~~~~~l~~f~~~~p~~~~~~~~i~GeSYgG~y~p~la~~i~~~~~~~l~g~~ign~~~d 182 (452)
T 1ivy_A 107 SYSD----DKFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLSS 182 (452)
T ss_dssp CEES----SCCCCCBHHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESCCSB
T ss_pred CCcC----CCCCcCCcHHHHHHHHHHHHHHHHhcHHhcCCCEEEEeeccceeehHHHHHHHHhcCccccceEEecCCccC
Confidence 5422 111211 123444444444333 344566889999999999966655543 3467999999999887
Q ss_pred h
Q 003886 708 L 708 (789)
Q Consensus 708 ~ 708 (789)
.
T Consensus 183 ~ 183 (452)
T 1ivy_A 183 Y 183 (452)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0054 Score=61.20 Aligned_cols=209 Identities=14% Similarity=0.166 Sum_probs=118.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
...+..+|+|+++.|+.+.+. ...++.++..++..+.+.+.+. ...+++++.++|+ ++.+.+.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~---~~~I~~ld~~g~v~~~i~l~g~--------~D~EGIa~~~~g~-~~vs~E~----- 89 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINK---PAAIVEMTTNGDLIRTIPLDFV--------KDLETIEYIGDNQ-FVISDER----- 89 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEET---TEEEEEEETTCCEEEEEECSSC--------SSEEEEEECSTTE-EEEEETT-----
T ss_pred cCcceeEEeCCCCEEEEEECC---CCeEEEEeCCCCEEEEEecCCC--------CChHHeEEeCCCE-EEEEECC-----
Confidence 457788999999998887765 3569999966777776655321 1127899998885 4333222
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCc-e---Eecc----CCCCCCccceEEEeeC
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGE-V---QAVK----GIPKSLSVGQVVWAPL 305 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~-~---~~l~----~~~~~~~~~~~~wSPD 305 (789)
...|+++++.... . .... ..+.+.....++|+|+
T Consensus 90 --------------------------------------~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~ 131 (255)
T 3qqz_A 90 --------------------------------------DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQ 131 (255)
T ss_dssp --------------------------------------TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETT
T ss_pred --------------------------------------CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCC
Confidence 2456666554322 1 1111 1234556789999999
Q ss_pred CCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeec-------CCCCCccCcce
Q 003886 306 NEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-------TESISSAFFPR 378 (789)
Q Consensus 306 g~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-------t~~~~~~~~p~ 378 (789)
+++ |+.+. +.. +..||.++-- ..+...+.+ ..........+
T Consensus 132 ~~~----L~va~-E~~------------p~~i~~~~g~---------------~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 132 DHT----FWFFK-EKN------------PIEVYKVNGL---------------LSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTE----EEEEE-ESS------------SEEEEEEEST---------------TCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCE----EEEEE-CcC------------CceEEEEccc---------------ccCCceeeecchhhccccccCCceeEE
Confidence 987 66554 322 2257777610 011111111 01123457788
Q ss_pred ecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCcccc--ccCCCCCccccCCC
Q 003886 379 FSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLY--SSSILSNPWLSDGC 456 (789)
Q Consensus 379 ~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~--~~~~~~~~ws~Dg~ 456 (789)
+.|.-..|+.++... ..|..+|..+. .+ ....+.. .+.|+. ......+++.++|+
T Consensus 180 ~dp~tg~lliLS~~s----------~~L~~~d~~g~-~~-------~~~~L~~-----g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 180 FNQQKNTLLVLSHES----------RALQEVTLVGE-VI-------GEMSLTK-----GSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp EETTTTEEEEEETTT----------TEEEEECTTCC-EE-------EEEECST-----TGGGCSSCCCSEEEEEECTTCC
T ss_pred EcCCCCeEEEEECCC----------CeEEEEcCCCC-EE-------EEEEcCC-----ccCCcccccCCCCeeEECCCCC
Confidence 889888888888664 46888887653 21 1111110 111110 01234678999996
Q ss_pred EEEEEEEeCCeEEEEEEECC
Q 003886 457 TMLLSSIWGSSQVIISVNVS 476 (789)
Q Consensus 457 ~l~~~~~~~~~~~l~~~dl~ 476 (789)
||+++. .. .+|++...
T Consensus 237 -lyIvsE-~n--~~y~f~~~ 252 (255)
T 3qqz_A 237 -IYIVSE-PN--RFYRFTPQ 252 (255)
T ss_dssp -EEEEET-TT--EEEEEEC-
T ss_pred -EEEEcC-Cc--eEEEEEec
Confidence 777642 22 67777653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.005 Score=72.16 Aligned_cols=182 Identities=8% Similarity=-0.048 Sum_probs=105.9
Q ss_pred ceEEEEEccCC----ceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccch
Q 003886 273 PSLFVININSG----EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 348 (789)
Q Consensus 273 ~~l~v~d~~~g----~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (789)
..|+++++++. ..+.+. ...-.....+++.+.++. |+++-. ....|+++++
T Consensus 446 ~~I~~~~l~g~~~~~~~~~vi-~~~l~~P~GLAvD~~~~~----LY~tD~--------------~~~~I~v~~l------ 500 (791)
T 3m0c_C 446 RMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSN----IYWTDS--------------VLGTVSVADT------ 500 (791)
T ss_dssp TEEEEEEC--------CEEEE-CSSCSCCCEEEEETTTTE----EEEEET--------------TTTEEEEEET------
T ss_pred eeEEEEeccCCCCCcceeEEE-ecCCCCcceeeeeecCCc----EEEEec--------------CCCeEEEEeC------
Confidence 56888888763 333331 112235567888888887 666542 2237999998
Q ss_pred hhhhhhhcCCCCCCCeeecCC-CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEE
Q 003886 349 ASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (789)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~ 427 (789)
++...+.|.. ........++.|.+..|+|+.... ..+|+++++++...+.+...
T Consensus 501 -----------dG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~---------~~~I~~~~~dG~~~~~lv~~----- 555 (791)
T 3m0c_C 501 -----------KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT---------PAKIKKGGLNGVDIYSLVTE----- 555 (791)
T ss_dssp -----------TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCCEEEEECS-----
T ss_pred -----------CCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCC---------CCeEEEEecCCCceEEEEeC-----
Confidence 5555555533 334466789999988888876321 24799999876443211110
Q ss_pred eeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC-CceeEEeeecCCEEEEEE
Q 003886 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~-~~~~~~~s~dg~~l~~~~ 506 (789)
... ....+++.+++++||++- .+...|+++++++...+.+..... ...-..++.++++|+++-
T Consensus 556 -------~l~-------~P~GLavD~~~~~LYwaD--~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD 619 (791)
T 3m0c_C 556 -------NIQ-------WPNGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 619 (791)
T ss_dssp -------SCS-------CEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEE
T ss_pred -------CCC-------CceEEEEecCCCeEEEEe--CCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEE
Confidence 001 122456777788898863 344579999998777766654322 112235666777777665
Q ss_pred eCCCCCCeEEEEeeccc
Q 003886 507 SSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 507 ss~~~p~~i~~~~~~~~ 523 (789)
... ..|++++..++
T Consensus 620 ~~~---~~I~~~dk~tG 633 (791)
T 3m0c_C 620 IIN---EAIFSANRLTG 633 (791)
T ss_dssp TTT---TEEEEEETTTC
T ss_pred CCC---CEEEEEeCCCC
Confidence 433 34676664433
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0093 Score=60.61 Aligned_cols=175 Identities=6% Similarity=-0.037 Sum_probs=90.8
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
..|+++|.++.....+. ......+..++++|||+ |+++.. ....|++++.
T Consensus 100 ~~i~~~d~~g~~~~~~~-~~~~~~~~~i~~~~~g~-----l~v~~~--------------~~~~i~~~~~---------- 149 (286)
T 1q7f_A 100 HQIQIYNQYGQFVRKFG-ATILQHPRGVTVDNKGR-----IIVVEC--------------KVMRVIIFDQ---------- 149 (286)
T ss_dssp CEEEEECTTSCEEEEEC-TTTCSCEEEEEECTTSC-----EEEEET--------------TTTEEEEECT----------
T ss_pred CEEEEECCCCcEEEEec-CccCCCceEEEEeCCCC-----EEEEEC--------------CCCEEEEEcC----------
Confidence 56888885444344442 22223566889999986 555431 1236888886
Q ss_pred hhhcCCCCCCCeeecC--CCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeee
Q 003886 353 ELKESSSEDLPVVNLT--ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (789)
Q Consensus 353 ~~~~~~~~~~~~~~Lt--~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~ 430 (789)
++.....+. .........+++|||+ |++.... ...|+++|..+.....+
T Consensus 150 -------~g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~----------~~~i~~~~~~g~~~~~~----------- 200 (286)
T 1q7f_A 150 -------NGNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDNR----------AHCVKVFNYEGQYLRQI----------- 200 (286)
T ss_dssp -------TSCEEEEEECTTTCSSEEEEEECSSSE-EEEEEGG----------GTEEEEEETTCCEEEEE-----------
T ss_pred -------CCCEEEEeCCCCccCCcEEEEECCCCC-EEEEECC----------CCEEEEEcCCCCEEEEE-----------
Confidence 433333332 2223456789999998 4333321 24699999644211100
Q ss_pred eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC--CceeEEeeecCCEEEEEEeC
Q 003886 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTLDGDNIIAVSSS 508 (789)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~--~~~~~~~s~dg~~l~~~~ss 508 (789)
.. ...+ ..+..+++++||+ |+++....+ ..|.+++.++..+..+..... ......++++|+ ++++ +.
T Consensus 201 ~~--~g~~-----~~p~~i~~d~~G~-l~v~~~~~~-~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs-~~ 269 (286)
T 1q7f_A 201 GG--EGIT-----NYPIGVGINSNGE-ILIADNHNN-FNLTIFTQDGQLISALESKVKHAQCFDVALMDDGS-VVLA-SK 269 (286)
T ss_dssp SC--TTTS-----CSEEEEEECTTCC-EEEEECSSS-CEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTE-EEEE-ET
T ss_pred cc--CCcc-----CCCcEEEECCCCC-EEEEeCCCC-EEEEEECCCCCEEEEEcccCCCCcceeEEECCCCc-EEEE-CC
Confidence 00 0000 0123567889996 665543222 257777865544555543222 122346677764 5544 32
Q ss_pred CCCCCeEEEEee
Q 003886 509 PVDVPQVKYGYF 520 (789)
Q Consensus 509 ~~~p~~i~~~~~ 520 (789)
. ..|.+++.
T Consensus 270 -~--~~v~v~~~ 278 (286)
T 1q7f_A 270 -D--YRLYIYRY 278 (286)
T ss_dssp -T--TEEEEEEC
T ss_pred -C--CeEEEEEc
Confidence 2 34555553
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00055 Score=79.66 Aligned_cols=146 Identities=14% Similarity=0.135 Sum_probs=86.5
Q ss_pred CceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 272 QPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
...|++++++++..+.+ +... .....++++|++.. |+++-+.. ...|+++++
T Consensus 474 ~~~I~v~d~dg~~~~~l--~~~~~~~P~giavDp~~g~----ly~td~~~-------------~~~I~~~~~-------- 526 (699)
T 1n7d_A 474 LGTVSVADTKGVKRKTL--FREQGSKPRAIVVDPVHGF----MYWTDWGT-------------PAKIKKGGL-------- 526 (699)
T ss_dssp TSCEEEEBSSSCCEEEE--CCCSSCCCCCEECCSSSSC----CEECCCSS-------------SCCEEBCCS--------
T ss_pred CCeEEEEecCCCceEEE--EeCCCCCcceEEEccCCCc----EEEcccCC-------------CCeEEEEeC--------
Confidence 35789999988776666 3332 35667899998887 66654211 136888887
Q ss_pred hhhhhcCCCCCCCeeec-CCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEee
Q 003886 351 ELELKESSSEDLPVVNL-TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~L-t~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~ 429 (789)
++...+.+ .........++|+|++++|+|+... ..+|+++|+.+...+.+. .
T Consensus 527 ---------dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~----------~~~I~~~d~dG~~~~~~~-------~- 579 (699)
T 1n7d_A 527 ---------NGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK----------LHSISSIDVNGGNRKTIL-------E- 579 (699)
T ss_dssp ---------SSCCCCEESCSSCSSCCCEEECTTTCCEEEEETT----------TTEEEEECSSSSCCEEEC-------C-
T ss_pred ---------CCCCeeEEEeCCCCCccEEEEeccCCEEEEEecC----------CCeEEEEccCCCceEEEE-------e-
Confidence 44433333 2333456778999999999887643 247999998753332111 0
Q ss_pred eeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEec
Q 003886 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRIT 484 (789)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt 484 (789)
.. ..++ .... .+.|+..||++. .+...|++++..+|+..+..
T Consensus 580 --~~--~~~~-----~P~g--lavd~~~lywtd--~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 580 --DE--KRLA-----HPFS--LAVFEDKVFWTD--IINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp --CS--SSCS-----SCCC--CEEETTEEEEEC--STTTCEEEEETTTEEEEECC
T ss_pred --cC--CcCC-----CceE--eEEECCEEEEEe--CCCCeEEEEEccCCCceEEe
Confidence 00 0000 1112 233556777664 23346788887777665544
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0083 Score=68.66 Aligned_cols=161 Identities=11% Similarity=0.053 Sum_probs=105.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCC-CccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQ-TVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~-~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
.......|+|++..|+++... ...++.+. +++..+.++.... .. .+++..+.++.|+++-.
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~---~~~I~r~~~~g~~~~~v~~~g~~~P----------~GlAvD~~~~~LY~tD~---- 99 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDIS---LKTISRAFMNGSALEHVVEFGLDYP----------EGMAVDWLGKNLYWADT---- 99 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETT---TTEEEEEETTSCSCEEEECSSCSCC----------CEEEEETTTTEEEEEET----
T ss_pred CceEEEEEECCCCEEEEEECC---CCeEEEEECCCCCcEEEEeCCCCCc----------ceEEEEeCCCEEEEEEC----
Confidence 346688999999998776443 23577777 4444444443221 12 57888888888776521
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLH 310 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~ 310 (789)
....|.+++++++..+.+ .... .....++..|....
T Consensus 100 ---------------------------------------~~~~I~v~~~dG~~~~~l--~~~~l~~P~~iavdp~~G~-- 136 (628)
T 4a0p_A 100 ---------------------------------------GTNRIEVSKLDGQHRQVL--VWKDLDSPRALALDPAEGF-- 136 (628)
T ss_dssp ---------------------------------------TTTEEEEEETTSTTCEEE--ECSSCCCEEEEEEETTTTE--
T ss_pred ---------------------------------------CCCEEEEEecCCCcEEEE--EeCCCCCcccEEEccCCCe--
Confidence 236799999988766655 2222 24568888987665
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEe
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLS 390 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s 390 (789)
|+++-|. ....|+++++ ++...+.+..........+++++++.|+|..
T Consensus 137 --lY~tD~g-------------~~~~I~r~~~-----------------dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD 184 (628)
T 4a0p_A 137 --MYWTEWG-------------GKPKIDRAAM-----------------DGSERTTLVPNVGRANGLTIDYAKRRLYWTD 184 (628)
T ss_dssp --EEEEECS-------------SSCEEEEEET-----------------TSCSCEEEECSCSSEEEEEEETTTTEEEEEE
T ss_pred --EEEeCCC-------------CCCEEEEEeC-----------------CCCceEEEECCCCCcceEEEccccCEEEEEE
Confidence 6665432 1237999998 5565665555555567789999999998877
Q ss_pred cCCCCCCCCccccceeEEeecCCCCC
Q 003886 391 AKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 391 ~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
... ..|+++|+++...
T Consensus 185 ~~~----------~~I~~~d~dG~~~ 200 (628)
T 4a0p_A 185 LDT----------NLIESSNMLGLNR 200 (628)
T ss_dssp TTT----------TEEEEEETTSCSC
T ss_pred CCC----------CEEEEEcCCCCce
Confidence 543 4799999876443
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.013 Score=59.63 Aligned_cols=173 Identities=8% Similarity=-0.049 Sum_probs=89.5
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
...|+++|. +++...+........+..++++|||+ |+++.. ....|+++|.
T Consensus 119 ~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-----l~v~~~--------------~~~~i~~~~~--------- 169 (299)
T 2z2n_A 119 GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-----LWFTEN--------------QNNAIGRITE--------- 169 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-----EEEEET--------------TTTEEEEECT---------
T ss_pred CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-----EEEEeC--------------CCCEEEEEcC---------
Confidence 467888888 56555442111223456788899885 665542 1236888885
Q ss_pred hhhhcCCCCCCCeee--cCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEee
Q 003886 352 LELKESSSEDLPVVN--LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (789)
Q Consensus 352 ~~~~~~~~~~~~~~~--Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~ 429 (789)
+++... +...........+++||+ | |++... ...|+++|. ++..... .
T Consensus 170 ---------~g~~~~~~~~~~~~~~~~i~~~~~g~-l-~v~~~~---------~~~i~~~~~-~g~~~~~--------~- 219 (299)
T 2z2n_A 170 ---------SGDITEFKIPTPASGPVGITKGNDDA-L-WFVEII---------GNKIGRITT-SGEITEF--------K- 219 (299)
T ss_dssp ---------TCCEEEEECSSTTCCEEEEEECTTSS-E-EEEETT---------TTEEEEECT-TCCEEEE--------E-
T ss_pred ---------CCcEEEeeCCCCCCcceeEEECCCCC-E-EEEccC---------CceEEEECC-CCcEEEE--------E-
Confidence 223332 222233455678899998 4 333321 236899987 4332111 0
Q ss_pred eeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC--CCceeEEeeecCCEEEEEEe
Q 003886 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE--SNFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~--~~~~~~~~s~dg~~l~~~~s 507 (789)
.+.... .+..+.++++|+ |++... +...|+++|. +|+...+.... .......+ ++ +.+++..+
T Consensus 220 --~~~~~~-------~~~~i~~~~~g~-l~v~~~--~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~-g~l~v~~~ 284 (299)
T 2z2n_A 220 --IPTPNA-------RPHAITAGAGID-LWFTEW--GANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DG-ETIWFAME 284 (299)
T ss_dssp --CSSTTC-------CEEEEEECSTTC-EEEEET--TTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CS-SCEEEEET
T ss_pred --CCCCCC-------CceeEEECCCCC-EEEecc--CCceEEEECC-CCceEEEeCCCCCCccceEEe-cC-CCEEEEec
Confidence 000000 123456788887 666532 2346888888 57766653221 12222334 33 44544433
Q ss_pred CCCCCCeEEEEeecc
Q 003886 508 SPVDVPQVKYGYFVD 522 (789)
Q Consensus 508 s~~~p~~i~~~~~~~ 522 (789)
...++++++.+
T Consensus 285 ----~~~l~~~~~~~ 295 (299)
T 2z2n_A 285 ----CDKIGKLTLIK 295 (299)
T ss_dssp ----TTEEEEEEEC-
T ss_pred ----CCcEEEEEcCc
Confidence 13577776543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.006 Score=71.47 Aligned_cols=161 Identities=10% Similarity=0.110 Sum_probs=101.5
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-----ceeEEEec-CCCccccccCCCcccceeecCCCCEEEEEee
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-----QLEKEFHV-PQTVHGSVYADGWFEGISWNSDETLIAYVAE 227 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~-----~~~~~~~~-~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~ 227 (789)
.....++|++.+.+|+++.... ..|+.+...+ ....++.. .... .++++.+.++.|+++-.
T Consensus 424 ~~~~gl~~d~~~~~lY~sD~~~---~~I~~~~l~g~~~~~~~~~vi~~~l~~P----------~GLAvD~~~~~LY~tD~ 490 (791)
T 3m0c_C 424 RNVVALDTEVASNRIYWSDLSQ---RMICSTQLDRAHGVSSYDTVISRDIQAP----------DGLAVDWIHSNIYWTDS 490 (791)
T ss_dssp SSEEEEEEETTTTEEEEEETTT---TEEEEEEC--------CEEEECSSCSCC----------CEEEEETTTTEEEEEET
T ss_pred CceEEEeecccCCeeEEeeccc---eeEEEEeccCCCCCcceeEEEecCCCCc----------ceeeeeecCCcEEEEec
Confidence 3466788999888887765432 3566666333 22233321 1112 57888888888776521
Q ss_pred cCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC-CccceEEEeeCC
Q 003886 228 EPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLN 306 (789)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg 306 (789)
....|+++++++...+.+ .... .....++..|.+
T Consensus 491 -------------------------------------------~~~~I~v~~ldG~~~~~l--~~~~l~~P~gIaVDp~~ 525 (791)
T 3m0c_C 491 -------------------------------------------VLGTVSVADTKGVKRKTL--FRENGSKPRAIVVDPVH 525 (791)
T ss_dssp -------------------------------------------TTTEEEEEETTSSSEEEE--EECTTCCEEEEEEETTT
T ss_pred -------------------------------------------CCCeEEEEeCCCCeEEEE--EeCCCCCcceEEEecCC
Confidence 236799999988776666 2222 246788999987
Q ss_pred CCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCC-CCCccCcceecCCCCE
Q 003886 307 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKF 385 (789)
Q Consensus 307 ~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~ 385 (789)
.. |+++-+.. ...|+++++ ++...+.|.. ........+++++++.
T Consensus 526 g~----LYwtD~g~-------------~~~I~~~~~-----------------dG~~~~~lv~~~l~~P~GLavD~~~~~ 571 (791)
T 3m0c_C 526 GF----MYWTDWGT-------------PAKIKKGGL-----------------NGVDIYSLVTENIQWPNGITLDLLSGR 571 (791)
T ss_dssp TE----EEEEECSS-------------SCEEEEEET-----------------TSCCEEEEECSSCSCEEEEEEETTTTE
T ss_pred CC----EEEecCCC-------------CCeEEEEec-----------------CCCceEEEEeCCCCCceEEEEecCCCe
Confidence 76 66654321 136999998 5555544433 3345667899999999
Q ss_pred EEEEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 386 la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
|+|+... ...|+++|+++...
T Consensus 572 LYwaD~~----------~~~I~~~d~dG~~~ 592 (791)
T 3m0c_C 572 LYWVDSK----------LHSISSIDVNGGNR 592 (791)
T ss_dssp EEEEETT----------TTEEEEEETTSCSC
T ss_pred EEEEeCC----------CCcEEEEecCCCce
Confidence 9887633 24799999876443
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0094 Score=61.33 Aligned_cols=161 Identities=12% Similarity=0.189 Sum_probs=92.5
Q ss_pred ccEEEEeCCCCCeEEEEecCCC------------CCCeEEEEecCCceeEEEecCCCccccccCCCcccceeec----CC
Q 003886 155 GASAVVPSPSGSKLLVVRNPEN------------ESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWN----SD 218 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~------------~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wS----pD 218 (789)
.....+++|+|+. ++...... ....++.+...++...+....... .++.|+ ||
T Consensus 118 ~~~~i~~d~~g~l-~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~----------~~i~~~~~~d~d 186 (314)
T 1pjx_A 118 GCNDCAFDYEGNL-WITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFP----------NGIAVRHMNDGR 186 (314)
T ss_dssp CCCEEEECTTSCE-EEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSE----------EEEEEEECTTSC
T ss_pred CCcCEEECCCCCE-EEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCCc----------ceEEEecccCCC
Confidence 3667899999964 44332210 113577766445554443321222 578899 99
Q ss_pred CCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEcc-CCceE---eccCCCCC
Q 003886 219 ETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININ-SGEVQ---AVKGIPKS 294 (789)
Q Consensus 219 g~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~-~g~~~---~l~~~~~~ 294 (789)
|+.|++... ....|+++|++ +|+.. .+...+..
T Consensus 187 g~~l~v~~~-------------------------------------------~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 223 (314)
T 1pjx_A 187 PYQLIVAET-------------------------------------------PTKKLWSYDIKGPAKIENKKVWGHIPGT 223 (314)
T ss_dssp EEEEEEEET-------------------------------------------TTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred CCEEEEEEC-------------------------------------------CCCeEEEEECCCCCccccceEEEECCCC
Confidence 987665422 12568888876 45421 11112222
Q ss_pred --CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCC
Q 003886 295 --LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESI 371 (789)
Q Consensus 295 --~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~ 371 (789)
.....+++++||+ |+++.. ....|+++|. ++++ ...+....
T Consensus 224 ~~~~p~~i~~d~~G~-----l~v~~~--------------~~~~i~~~d~-----------------~~g~~~~~~~~~~ 267 (314)
T 1pjx_A 224 HEGGADGMDFDEDNN-----LLVANW--------------GSSHIEVFGP-----------------DGGQPKMRIRCPF 267 (314)
T ss_dssp SSCEEEEEEEBTTCC-----EEEEEE--------------TTTEEEEECT-----------------TCBSCSEEEECSS
T ss_pred CCCCCCceEECCCCC-----EEEEEc--------------CCCEEEEEcC-----------------CCCcEeEEEeCCC
Confidence 3456788999986 555432 1236888887 4232 33343333
Q ss_pred CccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCC
Q 003886 372 SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 372 ~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
......+|+|||+.|++..... ..|+++++...+
T Consensus 268 ~~~~~i~~~~dg~~l~v~~~~~----------~~l~~~~~~~~g 301 (314)
T 1pjx_A 268 EKPSNLHFKPQTKTIFVTEHEN----------NAVWKFEWQRNG 301 (314)
T ss_dssp SCEEEEEECTTSSEEEEEETTT----------TEEEEEECSSCB
T ss_pred CCceeEEECCCCCEEEEEeCCC----------CeEEEEeCCCCC
Confidence 4567788999999876665432 369999886543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.015 Score=66.52 Aligned_cols=178 Identities=10% Similarity=-0.018 Sum_probs=108.6
Q ss_pred ceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
..|++++++++..+.+ .... .....++..+.++. |+++-. ....|.++++
T Consensus 59 ~~I~r~~~~g~~~~~v--~~~g~~~P~GlAvD~~~~~----LY~tD~--------------~~~~I~v~~~--------- 109 (628)
T 4a0p_A 59 KTISRAFMNGSALEHV--VEFGLDYPEGMAVDWLGKN----LYWADT--------------GTNRIEVSKL--------- 109 (628)
T ss_dssp TEEEEEETTSCSCEEE--ECSSCSCCCEEEEETTTTE----EEEEET--------------TTTEEEEEET---------
T ss_pred CeEEEEECCCCCcEEE--EeCCCCCcceEEEEeCCCE----EEEEEC--------------CCCEEEEEec---------
Confidence 6788999988766655 2222 35667888888887 776532 1236899998
Q ss_pred hhhhcCCCCCCCeeecC-CCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeee
Q 003886 352 LELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (789)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~ 430 (789)
++...+.|. .........++.|....|+|..... ..+|+++++++.....+...
T Consensus 110 --------dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~---------~~~I~r~~~dG~~~~~l~~~-------- 164 (628)
T 4a0p_A 110 --------DGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGG---------KPKIDRAAMDGSERTTLVPN-------- 164 (628)
T ss_dssp --------TSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCSCEEEECS--------
T ss_pred --------CCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCC---------CCEEEEEeCCCCceEEEECC--------
Confidence 555444443 3334466778999777787765321 34799999877554221110
Q ss_pred eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCC
Q 003886 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPV 510 (789)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~ 510 (789)
.. ....+.+++++++||++-. +...|+++|++++..+.+..... .-..++.+++.++++...
T Consensus 165 -----~~-------~P~GlalD~~~~~LY~aD~--~~~~I~~~d~dG~~~~v~~~~l~--~P~glav~~~~ly~tD~~-- 226 (628)
T 4a0p_A 165 -----VG-------RANGLTIDYAKRRLYWTDL--DTNLIESSNMLGLNREVIADDLP--HPFGLTQYQDYIYWTDWS-- 226 (628)
T ss_dssp -----CS-------SEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECCS--CEEEEEEETTEEEEEETT--
T ss_pred -----CC-------CcceEEEccccCEEEEEEC--CCCEEEEEcCCCCceEEeeccCC--CceEEEEECCEEEEecCC--
Confidence 01 1235678888888988643 44578999997766644432221 112455566777766532
Q ss_pred CCCeEEEEeeccc
Q 003886 511 DVPQVKYGYFVDK 523 (789)
Q Consensus 511 ~p~~i~~~~~~~~ 523 (789)
-..|++++..++
T Consensus 227 -~~~I~~~dk~tg 238 (628)
T 4a0p_A 227 -RRSIERANKTSG 238 (628)
T ss_dssp -TTEEEEEETTTC
T ss_pred -CCEEEEEECCCC
Confidence 335777775444
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.01 Score=67.81 Aligned_cols=204 Identities=10% Similarity=0.024 Sum_probs=120.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCce--eEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQL--EKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
.....+.|+|+++.|+++... ...++.+...|.. ..++.. +.. .-.+++..+.++.|+++-.
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~---~~~I~r~~~~g~~~~~~v~~~--~~~-------~P~GlAvD~~~~~ly~~d~---- 103 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVS---EEAIKRTEFNKTESVQNVVVS--GLL-------SPDGLACDWLGEKLYWTDS---- 103 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETT---TTEEEEEEC-----CEEEECS--SCS-------CEEEEEEETTTTEEEEEET----
T ss_pred CceEEEEEEeCCCEEEEEECC---CCeEEEEEccCCCceEEEEeC--CCC-------CcCeEEEEecCCEEEEEeC----
Confidence 456788999999998776432 2356666643332 222221 111 1157888888888876522
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLH 310 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~ 310 (789)
....|.++++++...+.+ .... .....++..|.+..
T Consensus 104 ---------------------------------------~~~~I~v~~~dG~~~~~l--~~~~l~~P~~Iavdp~~g~-- 140 (619)
T 3s94_A 104 ---------------------------------------ETNRIEVSNLDGSLRKVL--FWQELDQPRAIALDPSSGF-- 140 (619)
T ss_dssp ---------------------------------------TTTEEEEEETTSCSCEEE--ECSSCSCCCCEEEETTTTE--
T ss_pred ---------------------------------------CCCEEEEEECCCCCEEEE--EeCCCCCCceEEEecCCCe--
Confidence 236799999988766656 2222 25678899998776
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecC-CCCCccCcceecCCCCEEEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~la~~ 389 (789)
|+|+-+.. ...|++.++ ++...+.+. .........+++++++.|++.
T Consensus 141 --ly~tD~g~-------------~~~I~r~~~-----------------dG~~~~~l~~~~~~~P~Glald~~~~~LY~a 188 (619)
T 3s94_A 141 --MYWTDWGE-------------VPKIERAGM-----------------DGSSRFIIINSEIYWPNGLTLDYEEQKLYWA 188 (619)
T ss_dssp --EEEEECSS-------------SCEEEEEET-----------------TSCSCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred --EEEeccCC-------------CCEEEEEEC-----------------CCCceEEEEeCCCCCCcEEEEEccCCEEEEE
Confidence 77765321 236999998 555444443 333456678999999999888
Q ss_pred ecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEE
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (789)
... ...|+++|+++...+.+..+. ++ ....+.+ ++..||++ . -+...
T Consensus 189 D~~----------~~~I~~~~~dG~~~~~~~~~~--------------~~-----~P~gi~~--~~~~ly~t-d-~~~~~ 235 (619)
T 3s94_A 189 DAK----------LNFIHKSNLDGTNRQAVVKGS--------------LP-----HPFALTL--FEDILYWT-D-WSTHS 235 (619)
T ss_dssp ETT----------TCCEEEESSSCCEEC----------------------------CCCEEE--SSSEEEEE-C-TTTCS
T ss_pred eCC----------CCeEEEecCCCCccEEEEeCC--------------CC-----CceEEEE--eCCEEEEe-c-CCCCE
Confidence 643 246999998775443221100 00 1123334 34467665 2 23456
Q ss_pred EEEEECCCCcEE
Q 003886 470 IISVNVSSGELL 481 (789)
Q Consensus 470 l~~~dl~tg~~~ 481 (789)
|+++|..+|+..
T Consensus 236 V~~~d~~tg~~~ 247 (619)
T 3s94_A 236 ILACNKYTGEGL 247 (619)
T ss_dssp EEEEESSSCCCC
T ss_pred EEEEECCCCccc
Confidence 899998877643
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0081 Score=61.07 Aligned_cols=93 Identities=10% Similarity=0.063 Sum_probs=52.6
Q ss_pred ceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
..|+++|.++.....+. .... ..+..++++|||+ |+++.. ....|+++|.
T Consensus 142 ~~i~~~~~~g~~~~~~~-~~~~~~~p~~i~~~~~g~-----l~v~~~--------------~~~~i~~~~~--------- 192 (286)
T 1q7f_A 142 MRVIIFDQNGNVLHKFG-CSKHLEFPNGVVVNDKQE-----IFISDN--------------RAHCVKVFNY--------- 192 (286)
T ss_dssp TEEEEECTTSCEEEEEE-CTTTCSSEEEEEECSSSE-----EEEEEG--------------GGTEEEEEET---------
T ss_pred CEEEEEcCCCCEEEEeC-CCCccCCcEEEEECCCCC-----EEEEEC--------------CCCEEEEEcC---------
Confidence 56888886654444442 1122 2466889999986 444431 1236888886
Q ss_pred hhhhcCCCCCCCeeecCCC--CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecC
Q 003886 352 LELKESSSEDLPVVNLTES--ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWP 412 (789)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~~--~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~ 412 (789)
++.....+... .......+++|||+ |+... .. ....|.++|..
T Consensus 193 --------~g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~-~~--------~~~~i~~~~~~ 237 (286)
T 1q7f_A 193 --------EGQYLRQIGGEGITNYPIGVGINSNGE-ILIAD-NH--------NNFNLTIFTQD 237 (286)
T ss_dssp --------TCCEEEEESCTTTSCSEEEEEECTTCC-EEEEE-CS--------SSCEEEEECTT
T ss_pred --------CCCEEEEEccCCccCCCcEEEECCCCC-EEEEe-CC--------CCEEEEEECCC
Confidence 44444444332 23456788999997 33333 21 11268899854
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.051 Score=55.03 Aligned_cols=171 Identities=12% Similarity=0.051 Sum_probs=90.5
Q ss_pred ceEEEEEccCCceEeccCCC-CCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 273 PSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~-~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
..|+++|.+ ++.+.+. .+ ....+..++++|+|+ |+++.. ....|++++.
T Consensus 83 ~~v~~~d~~-g~~~~~~-~~~~~~~~~~i~~~~~g~-----l~v~~~--------------~~~~i~~~~~--------- 132 (300)
T 2qc5_A 83 NKIGKLSKK-GGFTEYP-LPQPDSGPYGITEGLNGD-----IWFTQL--------------NGDRIGKLTA--------- 132 (300)
T ss_dssp TEEEEECTT-SCEEEEE-CSSTTCCEEEEEECSTTC-----EEEEET--------------TTTEEEEECT---------
T ss_pred CeEEEECCC-CCeEEec-CCCCCCCCccceECCCCC-----EEEEcc--------------CCCeEEEECC---------
Confidence 568888877 6655442 22 223566788888886 555441 1236888886
Q ss_pred hhhhcCCCCCCCeeec--CCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEee
Q 003886 352 LELKESSSEDLPVVNL--TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (789)
Q Consensus 352 ~~~~~~~~~~~~~~~L--t~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~ 429 (789)
+ ++...+ ...........+++||+ |++.... ...|+++|. ++.....
T Consensus 133 --------~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~----------~~~i~~~~~-~g~~~~~---------- 181 (300)
T 2qc5_A 133 --------D-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQ----------NNSIGRITN-TGKLEEY---------- 181 (300)
T ss_dssp --------T-SCEEEEECSSTTCCEEEEEECTTSS-EEEEETT----------TTEEEEECT-TCCEEEE----------
T ss_pred --------C-CCEEEccCCCCCCCceeEEECCCCC-EEEEecC----------CCeEEEECC-CCcEEEe----------
Confidence 4 343322 22233456778899998 4444322 236899987 3322110
Q ss_pred eeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC--CCCceeEEeeecCCEEEEEEe
Q 003886 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA--ESNFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~~~~~s~dg~~l~~~~s 507 (789)
..+.... .+..+.+.++|+ |++.... ...|++++. +|+...+... ........++++|+ +++...
T Consensus 182 -~~~~~~~-------~~~~i~~d~~g~-l~v~~~~--~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~ 248 (300)
T 2qc5_A 182 -PLPTNAA-------APVGITSGNDGA-LWFVEIM--GNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSE-IWFTEW 248 (300)
T ss_dssp -ECSSTTC-------CEEEEEECTTSS-EEEEETT--TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTC-EEEEET
T ss_pred -eCCCCCC-------CcceEEECCCCC-EEEEccC--CCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCC-EEEecc
Confidence 0010001 123456778885 6665432 335788887 6766655322 12223344556655 444432
Q ss_pred CCCCCCeEEEEee
Q 003886 508 SPVDVPQVKYGYF 520 (789)
Q Consensus 508 s~~~p~~i~~~~~ 520 (789)
. ...|++++.
T Consensus 249 ~---~~~i~~~~~ 258 (300)
T 2qc5_A 249 G---ANQIGRITN 258 (300)
T ss_dssp T---TTEEEEECT
T ss_pred C---CCeEEEECC
Confidence 2 234666665
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.025 Score=56.39 Aligned_cols=204 Identities=9% Similarity=0.123 Sum_probs=110.3
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceE-ecc
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ-AVK 289 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~-~l~ 289 (789)
++++|.||+++|+.+.+. .+.|+.+|++ |++. .+.
T Consensus 30 SGla~~~~~~~L~aV~d~-------------------------------------------~~~I~~ld~~-g~v~~~i~ 65 (255)
T 3qqz_A 30 SSLTWSAQSNTLFSTINK-------------------------------------------PAAIVEMTTN-GDLIRTIP 65 (255)
T ss_dssp EEEEEETTTTEEEEEEET-------------------------------------------TEEEEEEETT-CCEEEEEE
T ss_pred ceeEEeCCCCEEEEEECC-------------------------------------------CCeEEEEeCC-CCEEEEEe
Confidence 899999999888776553 2679999998 5544 442
Q ss_pred CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCC--Ceeec
Q 003886 290 GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDL--PVVNL 367 (789)
Q Consensus 290 ~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~L 367 (789)
..+......+++.++|. ++ ++.+. ...|+++++.. .+. .....
T Consensus 66 -l~g~~D~EGIa~~~~g~-----~~-vs~E~-------------~~~l~~~~v~~---------------~~~i~~~~~~ 110 (255)
T 3qqz_A 66 -LDFVKDLETIEYIGDNQ-----FV-ISDER-------------DYAIYVISLTP---------------NSEVKILKKI 110 (255)
T ss_dssp -CSSCSSEEEEEECSTTE-----EE-EEETT-------------TTEEEEEEECT---------------TCCEEEEEEE
T ss_pred -cCCCCChHHeEEeCCCE-----EE-EEECC-------------CCcEEEEEcCC---------------CCeeeeeeee
Confidence 23334566788877764 33 33322 23577766621 110 01111
Q ss_pred ------CCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccc
Q 003886 368 ------TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGL 441 (789)
Q Consensus 368 ------t~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~ 441 (789)
..........+|+|++++|+....+. ...||.++ +-.. .....+........ . +
T Consensus 111 ~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~---------p~~i~~~~---g~~~---~~~l~i~~~~~~~~-~----~ 170 (255)
T 3qqz_A 111 KIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN---------PIEVYKVN---GLLS---SNELHISKDKALQR-Q----F 170 (255)
T ss_dssp ECCCSSCCCSSCCEEEEEETTTTEEEEEEESS---------SEEEEEEE---STTC---SSCCEEEECHHHHH-T----C
T ss_pred ccccccccccCCcceEEEeCCCCEEEEEECcC---------CceEEEEc---cccc---CCceeeecchhhcc-c----c
Confidence 12233467899999999987766553 23688887 1100 00001110000000 0 0
Q ss_pred cccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC---------CceeEEeeecCCEEEEEEeCCCCC
Q 003886 442 YSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES---------NFSWSLLTLDGDNIIAVSSSPVDV 512 (789)
Q Consensus 442 ~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~---------~~~~~~~s~dg~~l~~~~ss~~~p 512 (789)
....+..+.+.|...++|+.+... ..|..+|.++.-+..+.-..+ ......+.++|+ |+.+ +-+
T Consensus 171 ~~~d~S~l~~dp~tg~lliLS~~s--~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv-sE~--- 243 (255)
T 3qqz_A 171 TLDDVSGAEFNQQKNTLLVLSHES--RALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV-SEP--- 243 (255)
T ss_dssp CSSCCCEEEEETTTTEEEEEETTT--TEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEE-ETT---
T ss_pred ccCCceeEEEcCCCCeEEEEECCC--CeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEE-cCC---
Confidence 011345677888888888876433 467888875442333222211 223457777775 4444 444
Q ss_pred CeEEEEee
Q 003886 513 PQVKYGYF 520 (789)
Q Consensus 513 ~~i~~~~~ 520 (789)
..+|++..
T Consensus 244 n~~y~f~~ 251 (255)
T 3qqz_A 244 NRFYRFTP 251 (255)
T ss_dssp TEEEEEEC
T ss_pred ceEEEEEe
Confidence 45777653
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.014 Score=57.90 Aligned_cols=199 Identities=11% Similarity=0.013 Sum_probs=110.1
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCc
Q 003886 158 AVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 236 (789)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 236 (789)
-..|+ || .+|.+.+..+.+.+..++ .+++..+.+.++... .+.-..++|++|+.+..
T Consensus 47 GL~~~-~~--~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~----------FgeGit~~g~~ly~ltw--------- 104 (262)
T 3nol_A 47 GFFYR-NG--YFYESTGLNGRSSIRKVDIESGKTLQQIELGKRY----------FGEGISDWKDKIVGLTW--------- 104 (262)
T ss_dssp EEEEE-TT--EEEEEEEETTEEEEEEECTTTCCEEEEEECCTTC----------CEEEEEEETTEEEEEES---------
T ss_pred eEEEE-CC--EEEEECCCCCCceEEEEECCCCcEEEEEecCCcc----------ceeEEEEeCCEEEEEEe---------
Confidence 45677 54 456666554566788888 778887777765433 23335567777755421
Q ss_pred cCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEE
Q 003886 237 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFV 316 (789)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~ 316 (789)
....++++|.++.++..- ++-. ......++||+. +|+
T Consensus 105 ----------------------------------~~~~v~v~D~~t~~~~~t--i~~~--~eG~glt~dg~~-----L~~ 141 (262)
T 3nol_A 105 ----------------------------------KNGLGFVWNIRNLRQVRS--FNYD--GEGWGLTHNDQY-----LIM 141 (262)
T ss_dssp ----------------------------------SSSEEEEEETTTCCEEEE--EECS--SCCCCEEECSSC-----EEE
T ss_pred ----------------------------------eCCEEEEEECccCcEEEE--EECC--CCceEEecCCCE-----EEE
Confidence 237899999999876543 1211 133456689986 455
Q ss_pred eecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCC--CCCccC---cceecCCCCEEEEEe
Q 003886 317 GWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTE--SISSAF---FPRFSPDGKFLVFLS 390 (789)
Q Consensus 317 ~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~--~~~~~~---~p~~SpDG~~la~~s 390 (789)
++. ...|+.+|. ++.+ ...+.- ...... ...|. ||+ |+ ..
T Consensus 142 SdG--------------s~~i~~iDp-----------------~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-ly-an 187 (262)
T 3nol_A 142 SDG--------------TPVLRFLDP-----------------ESLTPVRTITVTAHGEELPELNELEWV-DGE-IF-AN 187 (262)
T ss_dssp CCS--------------SSEEEEECT-----------------TTCSEEEEEECEETTEECCCEEEEEEE-TTE-EE-EE
T ss_pred ECC--------------CCeEEEEcC-----------------CCCeEEEEEEeccCCccccccceeEEE-CCE-EE-EE
Confidence 532 236999997 4433 233322 111122 24565 774 44 33
Q ss_pred cCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCC--CCccccccCCCCCccccCCCEEEEEEEeCCeE
Q 003886 391 AKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGD--CFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQ 468 (789)
Q Consensus 391 ~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~--~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 468 (789)
.- ....|.++|..+++... .+++-...... ..+ -...+..++|+|++++||+++ ....
T Consensus 188 ~w---------~~~~I~vIDp~tG~V~~-------~Id~~~L~~~~~~~~~--~~~vlNGIA~dp~~~~lfVTG--K~Wp 247 (262)
T 3nol_A 188 VW---------QTNKIVRIDPETGKVTG-------IIDLNGILAEAGPLPS--PIDVLNGIAWDKEHHRLFVTG--KLWP 247 (262)
T ss_dssp ET---------TSSEEEEECTTTCBEEE-------EEECTTGGGGSCSCCS--SCCCEEEEEEETTTTEEEEEE--TTCS
T ss_pred Ec---------cCCeEEEEECCCCcEEE-------EEECCcCccccccccC--cCCceEEEEEcCCCCEEEEEC--CCCC
Confidence 21 13479999998876521 11111000000 000 001124678999999998875 3345
Q ss_pred EEEEEEC
Q 003886 469 VIISVNV 475 (789)
Q Consensus 469 ~l~~~dl 475 (789)
.||.+.+
T Consensus 248 ~~~ev~~ 254 (262)
T 3nol_A 248 KVFEITL 254 (262)
T ss_dssp EEEEEEE
T ss_pred ceEEEEE
Confidence 6776654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.042 Score=54.04 Aligned_cols=178 Identities=13% Similarity=0.201 Sum_probs=99.3
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
...|.++|+++|++..-...+. .......+++++. |+-..|. ...++++|.
T Consensus 42 ~S~v~~vD~~tgkv~~~~~l~~--~~fgeGi~~~~~~----ly~ltw~--------------~~~v~v~D~--------- 92 (243)
T 3mbr_X 42 RSSVRKVDLETGRILQRAEVPP--PYFGAGIVAWRDR----LIQLTWR--------------NHEGFVYDL--------- 92 (243)
T ss_dssp SCEEEEEETTTCCEEEEEECCT--TCCEEEEEEETTE----EEEEESS--------------SSEEEEEET---------
T ss_pred CceEEEEECCCCCEEEEEeCCC--CcceeEEEEeCCE----EEEEEee--------------CCEEEEEEC---------
Confidence 4789999999999865421222 2233445667777 6666653 337999997
Q ss_pred hhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeee
Q 003886 352 LELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVV 430 (789)
Q Consensus 352 ~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~ 430 (789)
++.+ ..++.... ....+++||+.|+ .++. ..+|+++|..+.+.. .-+.+.
T Consensus 93 --------~tl~~~~ti~~~~---~Gwglt~dg~~L~-vSdg----------s~~l~~iDp~t~~~~-------~~I~V~ 143 (243)
T 3mbr_X 93 --------ATLTPRARFRYPG---EGWALTSDDSHLY-MSDG----------TAVIRKLDPDTLQQV-------GSIKVT 143 (243)
T ss_dssp --------TTTEEEEEEECSS---CCCEEEECSSCEE-EECS----------SSEEEEECTTTCCEE-------EEEECE
T ss_pred --------CcCcEEEEEeCCC---CceEEeeCCCEEE-EECC----------CCeEEEEeCCCCeEE-------EEEEEc
Confidence 4443 33443321 3456678998765 4532 246999998775432 111111
Q ss_pred eccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC--------------CCceeEEee
Q 003886 431 QCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE--------------SNFSWSLLT 496 (789)
Q Consensus 431 ~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~--------------~~~~~~~~s 496 (789)
..+ ++ ...+..+.|. +|+ || ...+.. ..|.++|+.+|++....... ...+..+++
T Consensus 144 ~~g----~~---~~~lNeLe~~-~G~-ly-anvw~s-~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d 212 (243)
T 3mbr_X 144 AGG----RP---LDNLNELEWV-NGE-LL-ANVWLT-SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFD 212 (243)
T ss_dssp ETT----EE---CCCEEEEEEE-TTE-EE-EEETTT-TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEE
T ss_pred cCC----cc---cccceeeEEe-CCE-EE-EEECCC-CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEc
Confidence 110 00 0011123344 564 65 334433 37999999999986543211 122345677
Q ss_pred ecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 497 LDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 497 ~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
+++++|+.+.-.. |.+|.+.+.
T Consensus 213 ~~~~~lfVTGK~w---p~~~~v~~~ 234 (243)
T 3mbr_X 213 AEHDRLFVTGKRW---PMLYEIRLT 234 (243)
T ss_dssp TTTTEEEEEETTC---SEEEEEEEC
T ss_pred CCCCEEEEECCCC---CcEEEEEEe
Confidence 7777777666444 446666553
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.013 Score=58.28 Aligned_cols=174 Identities=13% Similarity=0.009 Sum_probs=96.3
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
..|.++|+++|++..-. .+. .......+++|+. |+...|.. ..++++|.
T Consensus 75 g~v~~iD~~Tgkv~~~~-l~~--~~FgeGit~~g~~----Ly~ltw~~--------------~~v~V~D~---------- 123 (268)
T 3nok_A 75 GTLRQLSLESAQPVWME-RLG--NIFAEGLASDGER----LYQLTWTE--------------GLLFTWSG---------- 123 (268)
T ss_dssp TEEEECCSSCSSCSEEE-ECT--TCCEEEEEECSSC----EEEEESSS--------------CEEEEEET----------
T ss_pred CEEEEEECCCCcEEeEE-CCC--CcceeEEEEeCCE----EEEEEccC--------------CEEEEEEC----------
Confidence 34999999999875542 222 2223346778888 87776532 37999997
Q ss_pred hhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeee
Q 003886 353 ELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQ 431 (789)
Q Consensus 353 ~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~ 431 (789)
++.+ ..++... .....+++||+.|+. ++. ..+|+.+|..+.+.. .-+.+..
T Consensus 124 -------~Tl~~~~ti~~~---~eGwGLt~Dg~~L~v-SdG----------s~~l~~iDp~T~~v~-------~~I~V~~ 175 (268)
T 3nok_A 124 -------MPPQRERTTRYS---GEGWGLCYWNGKLVR-SDG----------GTMLTFHEPDGFALV-------GAVQVKL 175 (268)
T ss_dssp -------TTTEEEEEEECS---SCCCCEEEETTEEEE-ECS----------SSEEEEECTTTCCEE-------EEEECEE
T ss_pred -------CcCcEEEEEeCC---CceeEEecCCCEEEE-ECC----------CCEEEEEcCCCCeEE-------EEEEeCC
Confidence 4443 3344322 123466789997754 432 247999998775432 1111111
Q ss_pred ccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC--------------CCceeEEeee
Q 003886 432 CAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE--------------SNFSWSLLTL 497 (789)
Q Consensus 432 ~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~--------------~~~~~~~~s~ 497 (789)
.+..-. .+..+.|. || +||+. .+. ...|.++|+++|++....... ......++++
T Consensus 176 ~g~~v~-------~lNeLe~~-dG-~lyan-vw~-s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp 244 (268)
T 3nok_A 176 RGQPVE-------LINELECA-NG-VIYAN-IWH-SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEP 244 (268)
T ss_dssp TTEECC-------CEEEEEEE-TT-EEEEE-ETT-CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECT
T ss_pred CCcccc-------cccccEEe-CC-EEEEE-ECC-CCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcC
Confidence 111000 11234565 77 47643 333 347999999999986543211 1223346666
Q ss_pred cCCEEEEEEeCCCCCCeEEEEe
Q 003886 498 DGDNIIAVSSSPVDVPQVKYGY 519 (789)
Q Consensus 498 dg~~l~~~~ss~~~p~~i~~~~ 519 (789)
++++|+.+.-.. |.+|.+.
T Consensus 245 ~~~rlfVTGK~W---p~~~ev~ 263 (268)
T 3nok_A 245 GSGRIFMTGKLW---PRLFEVR 263 (268)
T ss_dssp TTCCEEEEETTC---SEEEEEE
T ss_pred CCCEEEEeCCCC---CceEEEE
Confidence 677666655433 3355444
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.031 Score=58.18 Aligned_cols=120 Identities=9% Similarity=0.102 Sum_probs=62.0
Q ss_pred cceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCC--CCCc
Q 003886 297 VGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTE--SISS 373 (789)
Q Consensus 297 ~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~--~~~~ 373 (789)
...++++||+.. |+++. . ....|.+++. ++++ ...+.. ....
T Consensus 198 p~gia~d~~~g~----l~v~d-~-------------~~~~I~~~~~-----------------~~G~~~~~~~~~~~~~~ 242 (329)
T 3fvz_A 198 PHSLALVPHLDQ----LCVAD-R-------------ENGRIQCFKT-----------------DTKEFVREIKHASFGRN 242 (329)
T ss_dssp EEEEEEETTTTE----EEEEE-T-------------TTTEEEEEET-----------------TTCCEEEEECCTTTTTC
T ss_pred CcEEEEECCCCE----EEEEE-C-------------CCCEEEEEEC-----------------CCCcEEEEEeccccCCC
Confidence 567899999665 55443 2 2236888887 4343 334422 2234
Q ss_pred cCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCcccc
Q 003886 374 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 453 (789)
Q Consensus 374 ~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~ 453 (789)
....+|+| | +++..+......+ .....++++|..+++.... +.. ....+ ..+..++++|
T Consensus 243 ~~~~~~~p-g--~~~~~~g~~~v~~--~~~~~v~~~~~~~g~~~~~----------~~~-~~~~~-----~~p~~ia~~~ 301 (329)
T 3fvz_A 243 VFAISYIP-G--FLFAVNGKPYFGD--QEPVQGFVMNFSSGEIIDV----------FKP-VRKHF-----DMPHDIVASE 301 (329)
T ss_dssp EEEEEEET-T--EEEEEECCCCTTC--SCCCCEEEEETTTCCEEEE----------ECC-SSSCC-----SSEEEEEECT
T ss_pred cceeeecC-C--EEEEeCCCEEecc--CCCcEEEEEEcCCCeEEEE----------EcC-CCCcc-----CCeeEEEECC
Confidence 55678899 4 2333332211111 1234789999877554211 100 00011 1234667899
Q ss_pred CCCEEEEEEEeCCeEEEEEEEC
Q 003886 454 DGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 454 Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
|| .||++....+ .|+++++
T Consensus 302 dG-~lyvad~~~~--~I~~~~~ 320 (329)
T 3fvz_A 302 DG-TVYIGDAHTN--TVWKFTL 320 (329)
T ss_dssp TS-EEEEEESSSC--CEEEEEE
T ss_pred CC-CEEEEECCCC--EEEEEeC
Confidence 99 6877654444 4444444
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0075 Score=61.35 Aligned_cols=185 Identities=13% Similarity=0.079 Sum_probs=98.9
Q ss_pred CccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccch
Q 003886 269 GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 348 (789)
Q Consensus 269 ~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (789)
+..+..|+++|.++|+...-...........+.++|||+. ++.. . ..|+.+|.
T Consensus 11 ~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~i-----lvs~-~---------------~~V~~~d~------ 63 (276)
T 3no2_A 11 GSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEI-----LFSY-S---------------KGAKMITR------ 63 (276)
T ss_dssp CTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCE-----EEEC-B---------------SEEEEECT------
T ss_pred eCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCE-----EEeC-C---------------CCEEEECC------
Confidence 3456889999998998765521222135678899999984 4432 1 14777775
Q ss_pred hhhhhhhcCCCCCCCeeecCCC-CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEE
Q 003886 349 ASELELKESSSEDLPVVNLTES-ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (789)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~Lt~~-~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~ 427 (789)
++....++..+ ........++|||+.|+-.+.. ..+++.+|.++ +.. ..+
T Consensus 64 -----------~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~----------~~~v~~vd~~G-k~l------~~~- 114 (276)
T 3no2_A 64 -----------DGRELWNIAAPAGCEMQTARILPDGNALVAWCGH----------PSTILEVNMKG-EVL------SKT- 114 (276)
T ss_dssp -----------TSCEEEEEECCTTCEEEEEEECTTSCEEEEEEST----------TEEEEEECTTS-CEE------EEE-
T ss_pred -----------CCCEEEEEcCCCCccccccEECCCCCEEEEecCC----------CCEEEEEeCCC-CEE------EEE-
Confidence 33444444432 1235567899999987655531 23577777533 221 000
Q ss_pred eeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEe
Q 003886 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s 507 (789)
.+ .. ..++.. .........+||+.++ +. .....++.+|.+ |+...-.............++|+.++...
T Consensus 115 ~~---~~--~~~~~~-~~~~~v~~~~~G~~lv-~~--~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~- 183 (276)
T 3no2_A 115 EF---ET--GIERPH-AQFRQINKNKKGNYLV-PL--FATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACG- 183 (276)
T ss_dssp EE---CC--SCSSGG-GSCSCCEECTTSCEEE-EE--TTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECB-
T ss_pred ec---cC--CCCccc-ccccCceECCCCCEEE-Ee--cCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeC-
Confidence 00 00 000000 0122445778998554 33 233468888987 66654433222122234556666554432
Q ss_pred CCCCCCeEEEEeeccc
Q 003886 508 SPVDVPQVKYGYFVDK 523 (789)
Q Consensus 508 s~~~p~~i~~~~~~~~ 523 (789)
. ...++.++..++
T Consensus 184 ~---~~~v~~~d~~tG 196 (276)
T 3no2_A 184 D---AHCFVQLNLESN 196 (276)
T ss_dssp T---TSEEEEECTTTC
T ss_pred C---CCeEEEEeCcCC
Confidence 2 235777776644
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.011 Score=62.30 Aligned_cols=67 Identities=9% Similarity=0.183 Sum_probs=37.4
Q ss_pred cccEEEEeCCCCCeEEEEecCC--CCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEE
Q 003886 154 TGASAVVPSPSGSKLLVVRNPE--NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAY 224 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~--~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~ 224 (789)
..+..++++|+|+ |+++.... .....++.++ .+++..+.+.++.... .......++.++|++..+++
T Consensus 67 ~~p~gv~~d~~g~-L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~---~~~~~~~~v~vd~~~g~~yv 136 (343)
T 2qe8_A 67 DTVLGIKSDGNGI-VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPIT---LSNSFVNDLAVDLIHNFVYI 136 (343)
T ss_dssp SCEEEEEECSSSE-EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTS---CTTCCCCEEEEETTTTEEEE
T ss_pred eEeeEEEEcCCCc-EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhc---ccccccceEEEecCCCEEEE
Confidence 4577889999986 54443220 0134577777 5676566665532210 01112368899988765544
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.11 Score=59.19 Aligned_cols=161 Identities=12% Similarity=0.088 Sum_probs=101.2
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-ceeEEEecC-CCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-QLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~-~~~~~~~~~-~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
.......+.+.+..|++.... ...++.+..+| ..+.++... ... .++++.+.++.|+++-.
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~---~~~I~r~~~~g~~~~~v~~~~~~~p----------~GlAvD~~~~~lY~tD~---- 411 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDE---VRAIRRSFIDGSGSQFVVTAQIAHP----------DGIAVDWVARNLYWTDT---- 411 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETT---TTEEEEEETTSCSCEEEECSSCSCC----------CEEEEETTTTEEEEEET----
T ss_pred CccEEEEEEcCCCeEEEEeCC---CCeEEEEEcCCCccEEEEECCCCCc----------CceEEecccCcEEEEeC----
Confidence 346678899988888776442 23577777433 444443321 122 57788777777766521
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLH 310 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~ 310 (789)
....|.+.++++...+.+ .... .....++..|....
T Consensus 412 ---------------------------------------~~~~I~v~~~~G~~~~~l--~~~~l~~P~~iavdp~~G~-- 448 (619)
T 3s94_A 412 ---------------------------------------GTDRIEVTRLNGTMRKIL--ISEDLEEPRAIVLDPMVGY-- 448 (619)
T ss_dssp ---------------------------------------TTTEEEEEETTSCSCEEE--ECTTCCSEEEEEEETTTTE--
T ss_pred ---------------------------------------CCCcEEEEeCCCCeEEEE--EECCCCCeeeEEEEcCCCc--
Confidence 236788999887766555 2222 25668888887555
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecC-CCCCccCcceecCCCCEEEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~la~~ 389 (789)
|+|+-+.. ...|++.++ ++...+.|. .........+++++++.|++.
T Consensus 449 --ly~tD~g~-------------~~~I~r~~~-----------------dG~~~~~l~~~~l~~P~GlalD~~~~~LY~a 496 (619)
T 3s94_A 449 --MYWTDWGE-------------IPKIERAAL-----------------DGSDRVVLVNTSLGWPNGLALDYDEGKIYWG 496 (619)
T ss_dssp --EEEEECSS-------------SCEEEEEET-----------------TSCSCEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred --EEEecCCC-------------CCEEEEEcc-----------------CCCccEEEEeCCCCCCeeeEEcccCCEEEEE
Confidence 66664321 236889987 444444443 334456678899999999887
Q ss_pred ecCCCCCCCCccccceeEEeecCCCCC
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
.... .+|.++++++...
T Consensus 497 D~~~----------~~I~~~~~dG~~~ 513 (619)
T 3s94_A 497 DAKT----------DKIEVMNTDGTGR 513 (619)
T ss_dssp ETTT----------TEEEEEESSSCCC
T ss_pred ECCC----------CEEEEEecCCCce
Confidence 6442 4799999876543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.14 Score=53.73 Aligned_cols=108 Identities=16% Similarity=0.051 Sum_probs=62.9
Q ss_pred CceEEEEEccCCceEeccCCCC--CCccceEEEeeCCCCCccEEEEEeec--CCceeeee-e-eeccCCcceEEEecccc
Q 003886 272 QPSLFVININSGEVQAVKGIPK--SLSVGQVVWAPLNEGLHQYLVFVGWS--SETRKLGI-K-YCYNRPCALYAVRVSLY 345 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~--~~~~~~~~wSPDg~~~~~~l~f~~~~--~~~~~~g~-~-~~~~~~~~l~~~d~~~~ 345 (789)
...||.++.+++..+.+....+ -....+++..+||+ ++++..- .++. .+. . +.......||+++.
T Consensus 140 ~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-----fyvt~~~~ftd~~-~~~~e~~~~~~~g~vyr~d~--- 210 (355)
T 3sre_A 140 TVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-----FYATNDHYFIDPY-LKSWEMHLGLAWSFVTYYSP--- 210 (355)
T ss_dssp EEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-----EEEEESCSCSSHH-HHHHHHHTTCCCEEEEEECT---
T ss_pred eEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-----EEecCCcEeCCcc-cccchhhccCCccEEEEEEC---
Confidence 3567778877665554421111 12567889999987 4444321 1100 000 0 00012357999884
Q ss_pred cchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 346 KSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
++++.+..+......++|||||++|++.... ..+|+++++...
T Consensus 211 ----------------~~~~~~~~~l~~pNGia~spDg~~lYvadt~----------~~~I~~~~~~~~ 253 (355)
T 3sre_A 211 ----------------NDVRVVAEGFDFANGINISPDGKYVYIAELL----------AHKIHVYEKHAN 253 (355)
T ss_dssp ----------------TCCEEEEEEESSEEEEEECTTSSEEEEEEGG----------GTEEEEEEECTT
T ss_pred ----------------CeEEEeecCCcccCcceECCCCCEEEEEeCC----------CCeEEEEEECCC
Confidence 2455555444556779999999998877643 257999998753
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.14 Score=51.64 Aligned_cols=169 Identities=9% Similarity=0.024 Sum_probs=87.6
Q ss_pred ceEEEEEccCCceEeccCCC-CCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 273 PSLFVININSGEVQAVKGIP-KSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~-~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
..|+++|.+ ++...+. .+ .......++++|||+ |++... ....|++++.
T Consensus 125 ~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~-----l~v~~~--------------~~~~i~~~~~--------- 174 (300)
T 2qc5_A 125 DRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNA-----LWFTEN--------------QNNSIGRITN--------- 174 (300)
T ss_dssp TEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSS-----EEEEET--------------TTTEEEEECT---------
T ss_pred CeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCC-----EEEEec--------------CCCeEEEECC---------
Confidence 568888887 6655442 22 223456788889886 555441 1235888885
Q ss_pred hhhhcCCCCCCCeeec--CCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEee
Q 003886 352 LELKESSSEDLPVVNL--TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (789)
Q Consensus 352 ~~~~~~~~~~~~~~~L--t~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~ 429 (789)
. ++...+ ...........+++||+ |++.... ...|+++|. ++..... .
T Consensus 175 --------~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~----------~~~i~~~~~-~g~~~~~--------~- 224 (300)
T 2qc5_A 175 --------T-GKLEEYPLPTNAAAPVGITSGNDGA-LWFVEIM----------GNKIGRITT-TGEISEY--------D- 224 (300)
T ss_dssp --------T-CCEEEEECSSTTCCEEEEEECTTSS-EEEEETT----------TTEEEEECT-TCCEEEE--------E-
T ss_pred --------C-CcEEEeeCCCCCCCcceEEECCCCC-EEEEccC----------CCEEEEEcC-CCcEEEE--------E-
Confidence 2 222222 22223456678899996 4443322 235888886 3222110 0
Q ss_pred eeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC--CCCceeEEeeecCCEEEEEEe
Q 003886 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA--ESNFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~~~~~s~dg~~l~~~~s 507 (789)
.+.... .+..+.++++|+ |++... +...|+++|. +|+...+... ........++++|+ +++. .
T Consensus 225 --~~~~~~-------~~~~i~~d~~g~-l~v~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~-~ 289 (300)
T 2qc5_A 225 --IPTPNA-------RPHAITAGKNSE-IWFTEW--GANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGS-VWFA-L 289 (300)
T ss_dssp --CSSTTC-------CEEEEEECSTTC-EEEEET--TTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSC-EEEE-C
T ss_pred --CCCCCC-------CceEEEECCCCC-EEEecc--CCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCC-EEEE-c
Confidence 000000 123456788887 666542 2346788887 5666655322 12222334555655 3333 2
Q ss_pred CCCCCCeEEEEee
Q 003886 508 SPVDVPQVKYGYF 520 (789)
Q Consensus 508 s~~~p~~i~~~~~ 520 (789)
. . .++++++
T Consensus 290 ~--~--~i~~~~p 298 (300)
T 2qc5_A 290 K--C--KIGKLNL 298 (300)
T ss_dssp S--S--EEEEEEE
T ss_pred c--C--ceEEeCC
Confidence 2 2 5777664
|
| >2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.003 Score=65.74 Aligned_cols=96 Identities=10% Similarity=0.026 Sum_probs=61.3
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (789)
...+.++++||++++ ...|......| ++.|+.+|+++. . ....++++.+.+..++..- ..
T Consensus 44 ~~~~~l~~~hg~~g~--~~~~~~~~~~l---~~~v~~~~~~~~-----~---------~~~~~~~~a~~~~~~i~~~-~~ 103 (316)
T 2px6_A 44 SSERPLFLVHPIEGS--TTVFHSLASRL---SIPTYGLQCTRA-----A---------PLDSIHSLAAYYIDCIRQV-QP 103 (316)
T ss_dssp CSSCCEEEECCTTCC--SGGGHHHHHHC---SSCEEEECCCTT-----S---------CTTCHHHHHHHHHHHHTTT-CS
T ss_pred CCCCeEEEECCCCCC--HHHHHHHHHhc---CCCEEEEECCCC-----C---------CcCCHHHHHHHHHHHHHHh-CC
Confidence 345678899997664 45666555555 389999999731 0 0123555555444444331 12
Q ss_pred CccEEEEEcCccHHHHHHHHHhCC---Cc---eeEEEEeCCc
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAP---DK---FVAAAARNPL 705 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p---~~---~~a~v~~~pv 705 (789)
..++.++|||+||.++..++.+.+ +. ++.+++.++.
T Consensus 104 ~~~~~l~G~S~Gg~va~~~a~~l~~~g~~~p~v~~l~li~~~ 145 (316)
T 2px6_A 104 EGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSLFLFDGS 145 (316)
T ss_dssp SCCCEEEEETHHHHHHHHHHHHHHHHC---CCCCEEEEESCS
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHHcCCcccccceEEEEcCC
Confidence 367999999999999999887643 44 7788776654
|
| >1ac5_A KEX1(delta)P; carboxypeptidase, hydrolase, glycoprotein, transmembrane; HET: NAG; 2.40A {Saccharomyces cerevisiae} SCOP: c.69.1.5 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.005 Score=67.65 Aligned_cols=130 Identities=16% Similarity=0.175 Sum_probs=77.6
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHH--------------------CCcEEEEEcCCCC
Q 003886 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSS--------------------VGYSLLIVNYRGS 632 (789)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~--------------------~Gy~V~~~d~rGs 632 (789)
+..+..|++...+.......|++++++|||++... + ..|.+ +-..|+.+|.+-.
T Consensus 48 ~~~lfy~~~~~~~~~~~~~~Pl~lwlnGGPG~SS~--~----g~~~e~GP~~~~~~~~l~~n~~sw~~~~n~lfiDqPvG 121 (483)
T 1ac5_A 48 DLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSM--D----GALVESGPFRVNSDGKLYLNEGSWISKGDLLFIDQPTG 121 (483)
T ss_dssp CCEEEEEEEECSCSGGGSSCCEEEEECCTTTBCTH--H----HHHHSSSSEEECTTSCEEECTTCGGGTSEEEEECCSTT
T ss_pred CceEEEEEEEecCCCCCcCCCEEEEECCCCchHhh--h----hhHhhcCCeEecCCCceeecccchhhcCCeEEEecCCC
Confidence 56788888865421234578999999999996432 1 11111 2257999996423
Q ss_pred CCCCchhhccC----CCCCCcc---cHHHHHHHHHHHHH-cCCCCCccEEEEEcCccHHHHHHHHHhC------------
Q 003886 633 LGFGEEALQSL----PGKVGSQ---DVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQA------------ 692 (789)
Q Consensus 633 ~G~G~~~~~~~----~~~~~~~---~~~D~~~~i~~l~~-~~~~d~~rv~l~G~S~GG~~a~~~~~~~------------ 692 (789)
.|+........ ...+... ..+|+...+....+ .+..-..++.|+|.||||..+..+|..-
T Consensus 122 tGfSy~~~~~~~~~~~~~~~~~~~~~a~~~~~fl~~~~~~fP~~~~~~~~i~GeSYgg~y~p~~a~~i~~~n~~~~~~~~ 201 (483)
T 1ac5_A 122 TGFSVEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGD 201 (483)
T ss_dssp STTCSSCCSSGGGSCTTSSCCSHHHHHHHHHHHHHHHHHHCTTGGGSEEEEEEEETHHHHHHHHHHHHHHHHHHCCSTTS
T ss_pred ccccCCcCcccccccccccCCCHHHHHHHHHHHHHHHHHhChhhcCCCEEEEeccccccccHHHHHHHHHhcccccccCc
Confidence 66654321110 0011111 12444444444333 3444567899999999999888776421
Q ss_pred CCceeEEEEeCCccch
Q 003886 693 PDKFVAAAARNPLCNL 708 (789)
Q Consensus 693 p~~~~a~v~~~pv~~~ 708 (789)
.-.++++++.+|+++.
T Consensus 202 ~inLkGi~IGNg~~d~ 217 (483)
T 1ac5_A 202 TYDLKALLIGNGWIDP 217 (483)
T ss_dssp CCEEEEEEEEEECCCH
T ss_pred ccceeeeEecCCcccc
Confidence 1358899999998875
|
| >4az3_A Lysosomal protective protein 32 kDa chain; hydrolase, drug discovery, carboxypeptidase, cardiovascular; HET: NAG S35; 2.04A {Homo sapiens} PDB: 4az0_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.015 Score=58.96 Aligned_cols=133 Identities=18% Similarity=0.224 Sum_probs=82.2
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHH----------------HHHHCCcEEEEEcCCCCCCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLA----------------FLSSVGYSLLIVNYRGSLGF 635 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~----------------~la~~Gy~V~~~d~rGs~G~ 635 (789)
++..+.-|++...+ .....|+|+++-|||+...........- -+. +-..|+.+|.+-..||
T Consensus 32 ~~~~lFywf~es~~--~p~~~Pl~lWlnGGPGcSS~~g~~~E~GP~~~~~~~~~l~~N~~sW~-~~an~lfiD~PvGtGf 108 (300)
T 4az3_A 32 GSKHLHYWFVESQK--DPENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWN-LIANVLYLESPAGVGF 108 (300)
T ss_dssp TTEEEEEEEECCSS--CTTTSCEEEEECCTTTBCTHHHHHHTTSSEEECTTSSCEEECTTCGG-GSSEEEEECCSTTSTT
T ss_pred CCCeEEEEEEEcCC--CCCCCCEEEEECCCCcHHHHHHHHhcCCCceecCCCccccccCccHH-hhhcchhhcCCCcccc
Confidence 46778888887653 3456899999999999643221110000 011 1246888987744677
Q ss_pred CchhhccCCCCCC-cccHHHHHHHHHHHHH-cCCCCCccEEEEEcCccHHHHHHHHHhC----CCceeEEEEeCCccchh
Q 003886 636 GEEALQSLPGKVG-SQDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQA----PDKFVAAAARNPLCNLA 709 (789)
Q Consensus 636 G~~~~~~~~~~~~-~~~~~D~~~~i~~l~~-~~~~d~~rv~l~G~S~GG~~a~~~~~~~----p~~~~a~v~~~pv~~~~ 709 (789)
........ ... .....|+...+....+ .+..-..++.|.|-||||..+..+|..- .-.++++++.+|+++..
T Consensus 109 Sy~~~~~~--~~~~~~~a~d~~~fl~~f~~~fp~~~~~~~yi~GESY~G~yvP~~a~~i~~~~~inLkG~~iGNg~~d~~ 186 (300)
T 4az3_A 109 SYSDDKFY--ATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSYE 186 (300)
T ss_dssp CEETTCCC--CCBHHHHHHHHHHHHHHHHHHCGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESCCSBHH
T ss_pred cccCCCcc--cccchhhHHHHHHHHHHHHHhChhhcCCceEEEecCCceeeHHHHHHHHHhCCCcccccceecCCccCHH
Confidence 65432111 111 1123455555544333 3445567899999999999888877532 22589999999999863
|
| >1cpy_A Serine carboxypeptidase; hydrolase (carboxypeptidase); HET: NAG; 2.60A {Saccharomyces cerevisiae} SCOP: c.69.1.5 PDB: 1wpx_A* 1ysc_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0037 Score=67.15 Aligned_cols=133 Identities=18% Similarity=0.195 Sum_probs=82.0
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHH---------H------HHHHHCCcEEEEEcCCCCCCCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS---------L------AFLSSVGYSLLIVNYRGSLGFG 636 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~---------~------~~la~~Gy~V~~~d~rGs~G~G 636 (789)
.+..+..|++...+ ...+.|+|++++|||++......... . .-+ .+-..|+.+|.+-..||.
T Consensus 26 ~~~~lfy~f~~s~~--~~~~~Pl~lwlnGGPG~SS~~g~~~e~GP~~~~~~~~l~~n~~sW-~~~an~lfiDqPvGtGfS 102 (421)
T 1cpy_A 26 EDKHFFFWTFESRN--DPAKDPVILWLNGGPGCSSLTGLFFALGPSSIGPDLKPIGNPYSW-NSNATVIFLDQPVNVGFS 102 (421)
T ss_dssp TTEEEEEEEECCSS--CTTTSCEEEEECCTTTBCTHHHHTTTTSSEEEETTTEEEECTTCG-GGGSEEECCCCSTTSTTC
T ss_pred CCcEEEEEEEEeCC--CCCCCCEEEEECCCCchHhHHHHHHccCCcEECCCCceeECCccc-ccccCEEEecCCCccccc
Confidence 35678888886543 34678999999999996432110000 0 001 112468888855346665
Q ss_pred chhhccCCCCCCcccHHHHHHHHHHHHH-cCCCCC--ccEEEEEcCccHHHHHHHHHhC------CCceeEEEEeCCccc
Q 003886 637 EEALQSLPGKVGSQDVNDVLTAIDHVID-MGLANP--SKVTVVGGSHGGFLTTHLIGQA------PDKFVAAAARNPLCN 707 (789)
Q Consensus 637 ~~~~~~~~~~~~~~~~~D~~~~i~~l~~-~~~~d~--~rv~l~G~S~GG~~a~~~~~~~------p~~~~a~v~~~pv~~ 707 (789)
...... ..-.....+|+.+.++...+ .+.... .++.|.|.||||..+..++..- .-.++++++.+|++|
T Consensus 103 y~~~~~--~~~~~~~a~~~~~fl~~~~~~~p~~~~~~~~~yi~GESY~G~y~p~~a~~i~~~n~~~inLkGi~IGNg~~d 180 (421)
T 1cpy_A 103 YSGSSG--VSNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLTD 180 (421)
T ss_dssp EESSCC--CCSSHHHHHHHHHHHHHHHHHCTTSTTTTCCEEEEEETTHHHHHHHHHHHHTTCSSCSSCCCEEEEESCCCC
T ss_pred CCCCCC--CCChHHHHHHHHHHHHHHHHhCHHhcccCCCEEEEeecccccccHHHHHHHHhccccccceeeEEecCcccC
Confidence 443211 11111235677777665555 344555 7899999999999888776532 125789999999988
Q ss_pred hh
Q 003886 708 LA 709 (789)
Q Consensus 708 ~~ 709 (789)
..
T Consensus 181 p~ 182 (421)
T 1cpy_A 181 PL 182 (421)
T ss_dssp HH
T ss_pred hh
Confidence 64
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.33 Score=49.69 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=23.9
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEec
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHV 196 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~ 196 (789)
.....+++|||+ | |+.+......+++.+. .+++...+...
T Consensus 73 ~p~gia~~~dG~-l-~vad~~~~~~~v~~~d~~~g~~~~~~~~ 113 (306)
T 2p4o_A 73 KVSGLAFTSNGD-L-VATGWNADSIPVVSLVKSDGTVETLLTL 113 (306)
T ss_dssp EEEEEEECTTSC-E-EEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred CceeEEEcCCCc-E-EEEeccCCcceEEEEcCCCCeEEEEEeC
Confidence 355678999998 4 4444321223577766 56666655554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 789 | ||||
| d1vlqa_ | 322 | c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Therm | 4e-13 | |
| d1l7aa_ | 318 | c.69.1.25 (A:) Cephalosporin C deacetylase {Bacill | 6e-11 | |
| d1thta_ | 302 | c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase | 1e-10 | |
| d2d81a1 | 318 | c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymer | 2e-08 | |
| d1xfda2 | 258 | c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-li | 7e-08 | |
| d1sfra_ | 288 | c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculo | 2e-07 | |
| d2b9va2 | 385 | c.69.1.21 (A:50-434) Alpha-amino acid ester hydrol | 2e-06 | |
| d1qfma2 | 280 | c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-term | 5e-06 | |
| d1mpxa2 | 381 | c.69.1.21 (A:24-404) Alpha-amino acid ester hydrol | 5e-06 | |
| d1lnsa3 | 405 | c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopep | 1e-05 | |
| d2gzsa1 | 265 | c.69.1.38 (A:41-305) Enterobactin and salmochelin | 7e-05 | |
| d1qlwa_ | 318 | c.69.1.15 (A:) A novel bacterial esterase {Alcalig | 1e-04 | |
| d1ufoa_ | 238 | c.69.1.27 (A:) Hypothetical protein TT1662 {Thermu | 1e-04 | |
| d1r88a_ | 267 | c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tu | 2e-04 | |
| d2bgra2 | 258 | c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26 | 2e-04 | |
| d3c8da2 | 246 | c.69.1.2 (A:151-396) Enterochelin esterase, cataly | 2e-04 | |
| d1tcaa_ | 317 | c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Cand | 4e-04 | |
| d3b5ea1 | 209 | c.69.1.14 (A:7-215) Uncharacterized protein Mll837 | 7e-04 | |
| d1dqza_ | 280 | c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculo | 0.001 |
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Score = 69.0 bits (167), Expect = 4e-13
Identities = 29/210 (13%), Positives = 58/210 (27%), Gaps = 29/210 (13%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR---------------------G 631
P +V G + F S+GY +++ R
Sbjct: 83 PCVVQYIGYNGG---RGFPHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPEGPVDPQ 139
Query: 632 SLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 691
GF + + D + A++ + ++ + GGS GG + +
Sbjct: 140 YPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSAL 199
Query: 692 APDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSP 751
+ LC+ V D + + ++ +D +
Sbjct: 200 SKKAKALLCDVPFLCHFRRAVQLVDTHPYAEITNFLKTHRDKEEIVFRTLSYFDGVN--- 256
Query: 752 ISHISKVKTPTIFLLGAQDLRVPVSNGLQV 781
++ K P +F +G D P S
Sbjct: 257 --FAARAKIPALFSVGLMDNICPPSTVFAA 284
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Score = 62.1 bits (149), Expect = 6e-11
Identities = 38/208 (18%), Positives = 70/208 (33%), Gaps = 19/208 (9%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG---- 648
P IV HG S + + GY+ + RG + ++ +G
Sbjct: 83 PAIVKYHGYNASYD--GEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTK 140
Query: 649 ----------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 698
D + A++ + + +++ V GGS GG LT + A
Sbjct: 141 GILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSDIPKAA 200
Query: 699 AAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV 758
A L N + + + S+ + TE +++ L+ F ++ +V
Sbjct: 201 VADYPYLSNFERAIDVALEQPYLEINSFFRRNGSPETEVQAMKTLSYFD---IMNLADRV 257
Query: 759 KTPTIFLLGAQDLRVPVSNGLQVIYHIP 786
K P + +G D P S H+
Sbjct: 258 KVPVLMSIGLIDKVTPPSTVFAAYNHLE 285
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Score = 61.1 bits (147), Expect = 1e-10
Identities = 23/203 (11%), Positives = 56/203 (27%), Gaps = 20/203 (9%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
I++ G + ++ +LS+ G+ + + +G ++ G +
Sbjct: 33 NTILIASGFARR--MDHFAGLAEYLSTNGFHVFRYDSLHHVGLSSGSIDEFTMTTGKNSL 90
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA---------RN 703
V + + ++ S + +I F+ A
Sbjct: 91 CTVYHWLQTK------GTQNIGLIAASLSARVAYEVISDLELSFLITAVGVVNLRDTLEK 144
Query: 704 PLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTI 763
L L + ++P+ E + + + S + ++ P I
Sbjct: 145 ALGFDYLSLPIDELPNDLDFEGHKLGSEVFVRDCFEHH---WDTLDSTLDKVANTSVPLI 201
Query: 764 FLLGAQDLRVPVSNGLQVIYHIP 786
D V ++ HI
Sbjct: 202 AFTANNDDWVKQEEVYDMLAHIR 224
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Score = 54.3 bits (130), Expect = 2e-08
Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 13/117 (11%)
Query: 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE--S 725
NP+ V+V G + GG++ L D F P C
Sbjct: 8 VNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAG-----------GPYDCARNQYY 56
Query: 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVI 782
+ + ++ + S + + G+ D V + Q+
Sbjct: 57 TSCMYNGYPSITTPTANMKSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLK 113
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (123), Expect = 7e-08
Identities = 28/193 (14%), Positives = 69/193 (35%), Gaps = 14/193 (7%)
Query: 593 PLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649
PL++V+ G P S S++ S +SS G ++ + RGS G + L + ++G
Sbjct: 32 PLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGL 91
Query: 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709
+ D + A+ ++ + ++V V G +GG+L+T+++ + +
Sbjct: 92 LEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPI 151
Query: 710 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 769
++ + ++ + +
Sbjct: 152 TDFKLYASAFSERYLGLHGLDNRAYEMTKVAHRVSALEEQQFLIIHPT-----------A 200
Query: 770 DLRVPVSNGLQVI 782
D ++ + ++I
Sbjct: 201 DEKIHFQHTAELI 213
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 51.1 bits (121), Expect = 2e-07
Identities = 28/196 (14%), Positives = 50/196 (25%), Gaps = 8/196 (4%)
Query: 593 PLIVVLHGGPHSVSLSSYSKS---LAFLSSVGYSLLIVNYRGSLGFG---EEALQSLPGK 646
P + +L G S + + + G S+++ S + + A +
Sbjct: 35 PALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSDWYQPACGKAGCQ 94
Query: 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706
+ + P+ VVG S L P +FV A A + L
Sbjct: 95 TYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLL 154
Query: 707 NLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLL 766
+ + +G T + G R + + T
Sbjct: 155 DPSQAMGPTL--IGLAMGDAGGYKASDMWGPKEDPAWQRNDPLLNVGKLIANNTRVWVYC 212
Query: 767 GAQDLRVPVSNGLQVI 782
G N L
Sbjct: 213 GNGKPSDLGGNNLPAK 228
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Score = 48.6 bits (114), Expect = 2e-06
Identities = 15/140 (10%), Positives = 36/140 (25%), Gaps = 11/140 (7%)
Query: 574 KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSL 633
+ + + + + GY + + RG
Sbjct: 52 RNAPILLTRTPYNAKGR------ANRVPNALTMREVLPQGDDVFVEGGYIRVFQDIRGKY 105
Query: 634 GFGEE-----ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHL 688
G + + + D +D ++ + +V + G S+ GF
Sbjct: 106 GSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMA 165
Query: 689 IGQAPDKFVAAAARNPLCNL 708
+ AA +P+ +
Sbjct: 166 LLDPHPALKVAAPESPMVDG 185
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 46.7 bits (109), Expect = 5e-06
Identities = 28/190 (14%), Positives = 41/190 (21%), Gaps = 3/190 (1%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P + +GG + +YS S +L V G E Q+
Sbjct: 37 PAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNC 96
Query: 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV 712
D + K + G G L L
Sbjct: 97 FDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKF 156
Query: 713 GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLR 772
I + S K F H+ + L D R
Sbjct: 157 HKYTIGHAWTTDYGCSDSKQHFEWLIKYSP---LHNVKLPEADDIQYPSMLLLTADHDDR 213
Query: 773 VPVSNGLQVI 782
V + L+ I
Sbjct: 214 VVPLHSLKFI 223
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Score = 47.1 bits (110), Expect = 5e-06
Identities = 22/130 (16%), Positives = 40/130 (30%), Gaps = 14/130 (10%)
Query: 593 PLIVVLH----GGPHSVSLSSYSKSL-----AFLSSVGYSLLIVNYRGSLGFGEE----- 638
P+++ G S + K L GY + + RG G +
Sbjct: 51 PIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGKYGSEGDYVMTR 110
Query: 639 ALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVA 698
L+ D ID ++ + KV ++G S+ GF +
Sbjct: 111 PLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKV 170
Query: 699 AAARNPLCNL 708
A +P+ +
Sbjct: 171 AVPESPMIDG 180
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Score = 46.1 bits (108), Expect = 1e-05
Identities = 27/231 (11%), Positives = 59/231 (25%), Gaps = 48/231 (20%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
+ ++ P+ + + + G++ + V G+ Q +
Sbjct: 108 KELPIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGF-----QTSGDYQQI 162
Query: 653 NDVLTAIDHVIDMGLANPS--------------KVTVVGGSHGGFLTTHLIGQAPDKFVA 698
+ ID + A S KV + G S+ G + +
Sbjct: 163 YSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLEL 222
Query: 699 AAARNPLCNLALMV---GTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR---------- 745
A + + G P E +++ + D +
Sbjct: 223 ILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNLDGADFLKGNAEYEKRLA 282
Query: 746 ----------------FHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780
+H ++ + + KVK + + G QD V
Sbjct: 283 EMTAALDRKSGDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYN 333
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Score = 43.1 bits (100), Expect = 7e-05
Identities = 17/210 (8%), Positives = 40/210 (19%), Gaps = 46/210 (21%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
P++ +L G L ++ V Y+ +L F +
Sbjct: 44 PILYMLDGNAVMDRLDDELLKQ-LSEKTPPVIVAVGYQTNLPFDLNSRAYDYTPAAESRK 102
Query: 653 ND--------------------VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA 692
D V + + + G S+GG +
Sbjct: 103 TDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLSS 162
Query: 693 PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPI 752
+ + +P + + ++
Sbjct: 163 SYFR-SYYSASPSLGRGYDALLSRVTAVEPLQ------------------------FCTK 197
Query: 753 SHISKVKTPTIFLLGAQDLRVPVSNGLQVI 782
+ T +S +
Sbjct: 198 HLAIMEGSATQGDNRETHAVGVLSKIHTTL 227
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Score = 42.5 bits (98), Expect = 1e-04
Identities = 23/212 (10%), Positives = 45/212 (21%), Gaps = 18/212 (8%)
Query: 593 PLIVVLHGGPHSVS-----LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647
I ++HG + + GYS +++ G + K+
Sbjct: 59 YPITLIHGCCLTGMTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDISAINAVKL 118
Query: 648 GSQDVNDVLTAIDH-----VIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAAR 702
G + L + + P + + Q +
Sbjct: 119 G-KAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQFPVQAQAELWQQMVPDWLGSMP 177
Query: 703 NPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTR-------FHSKSPISHI 755
P +A + D + S+ G F + P
Sbjct: 178 TPNPTVANLSKLAIKLDGTVLLSHSQSGIYPFQTAAMNPKGITAIVSVEPGECPKPEDVK 237
Query: 756 SKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787
P + + G P H
Sbjct: 238 PLTSIPVLVVFGDHIEEFPRWAPRLKACHAFI 269
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Score = 42.1 bits (97), Expect = 1e-04
Identities = 27/192 (14%), Positives = 50/192 (26%), Gaps = 27/192 (14%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDV 652
L++ LHG S L + G+ LL + S + +
Sbjct: 25 ALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVY 82
Query: 653 NDVLT----AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708
L A + + + GGS G F+ L+ + A +
Sbjct: 83 RVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFRPRGVLAFIGSGFPM 142
Query: 709 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 768
L G + + + P + L G+
Sbjct: 143 KLPQGQVVEDPGVL---------------------ALYQAPPATRGEAYGGVPLLHLHGS 181
Query: 769 QDLRVPVSNGLQ 780
+D VP++ +
Sbjct: 182 RDHIVPLARMEK 193
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 267 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 41.8 bits (97), Expect = 2e-04
Identities = 23/182 (12%), Positives = 53/182 (29%), Gaps = 9/182 (4%)
Query: 592 DPLIVVLHG---GPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648
+ +L GP + + ++ L+ G S++ G+ Q +
Sbjct: 27 PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPA-GGAYSMYTNWEQDGSKQWD 85
Query: 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708
+ ++ D + P VG + GG+ L PD+F A + +
Sbjct: 86 TFLSAEL---PDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYP 142
Query: 709 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGA 768
+ ++ +G + +P + S +++ T
Sbjct: 143 SNTTTNG--AIAAGMQQFGGVDTNGMWGAPQLGRWKWHDPWVHASLLAQNNTRVWVWSPT 200
Query: 769 QD 770
Sbjct: 201 NP 202
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 41.7 bits (96), Expect = 2e-04
Identities = 30/193 (15%), Positives = 67/193 (34%), Gaps = 16/193 (8%)
Query: 593 PLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649
PL++ ++ GP S + + S+ + + RGS G++ + ++ ++G+
Sbjct: 33 PLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGT 92
Query: 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709
+V D + A MG + ++ + G S+GG++T+ ++G F A P+
Sbjct: 93 FEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWE 152
Query: 710 LMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ 769
+ +S + + + + G
Sbjct: 153 YYDSVYTERYMGLPTPEDNLDH-------------YRNSTVMSRAENFKQVEYLLIHGTA 199
Query: 770 DLRVPVSNGLQVI 782
D V Q+
Sbjct: 200 DDNVHFQQSAQIS 212
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Score = 41.5 bits (96), Expect = 2e-04
Identities = 23/135 (17%), Positives = 39/135 (28%), Gaps = 2/135 (1%)
Query: 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD- 651
PL V+L G + S+ L L+ V LP
Sbjct: 45 PLAVLLDGEFWAQSMPV-WPVLTSLTHRQQLPPAVYVLIDAIDTTHRAHELPCNADFWLA 103
Query: 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALM 711
V L + VI + V G S GG + P++F +++
Sbjct: 104 VQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHR 163
Query: 712 VGTTDIPDWCYVESY 726
G + +++
Sbjct: 164 GGQQEGVLLEKLKAG 178
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Score = 40.9 bits (95), Expect = 4e-04
Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 13/100 (13%)
Query: 595 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVND 654
I+++ G + S S + + +GY+ ++ + +
Sbjct: 34 ILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPF-MLND----------TQVNTEY 82
Query: 655 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 694
++ AI + N K+ V+ S GG + + P
Sbjct: 83 MVNAITALYAGSGNN--KLPVLTWSQGGLVAQWGLTFFPS 120
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Score = 39.6 bits (91), Expect = 7e-04
Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 2/133 (1%)
Query: 593 PLIVVLHG-GPHSVSLSSYSKSLAFLSSVGYSLLIVNY-RGSLGFGEEALQSLPGKVGSQ 650
+ +LHG G +L ++ +A +++ + + G F K
Sbjct: 24 ECLFLLHGSGVDETTLVPLARRIAPTATLVAARGRIPQEDGFRWFERIDPTRFEQKSILA 83
Query: 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLAL 710
+ + N T +G S+G L + L+ P AA P+ L
Sbjct: 84 ETAAFAAFTNEAAKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDH 143
Query: 711 MVGTTDIPDWCYV 723
+ T +
Sbjct: 144 VPATDLAGIRTLI 156
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.5 bits (91), Expect = 0.001
Identities = 24/197 (12%), Positives = 49/197 (24%), Gaps = 8/197 (4%)
Query: 592 DPLIVVLHGGPHSVSLSSYSKS---LAFLSSVGYSLLIVNYRGSLGFG---EEALQSLPG 645
+ +L G + + + G S+++ S + + + +
Sbjct: 29 PHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQSSFYTDWYQPSQSNGQN 88
Query: 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705
+ + +P+ VG S G L P +F AA+ +
Sbjct: 89 YTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGF 148
Query: 706 CNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFL 765
N + T + G +S S R I + T
Sbjct: 149 LNPSESWWPT--LIGLAMNDSGGYNANSMWGPSSDPAWKRNDPMVQIPRLVANNTRIWVY 206
Query: 766 LGAQDLRVPVSNGLQVI 782
G + +
Sbjct: 207 CGNGTPSDLGGDNIPAK 223
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 789 | |||
| d2hu7a2 | 260 | Acylamino-acid-releasing enzyme, C-terminal donain | 99.94 | |
| d1xfda2 | 258 | Dipeptidyl aminopeptidase-like protein 6, DPP6, C- | 99.93 | |
| d2bgra2 | 258 | Dipeptidyl peptidase IV/CD26, C-terminal domain {P | 99.93 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.91 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.91 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.87 | |
| d2jbwa1 | 360 | 2,6-dihydropseudooxynicotine hydrolase {Arthrobact | 99.86 | |
| d1vlqa_ | 322 | Acetyl xylan esterase TM0077 {Thermotoga maritima | 99.84 | |
| d1l7aa_ | 318 | Cephalosporin C deacetylase {Bacillus subtilis [Ta | 99.84 | |
| d1qfma2 | 280 | Prolyl oligopeptidase, C-terminal domain {Pig (Sus | 99.83 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.8 | |
| d1thta_ | 302 | Myristoyl-ACP-specific thioesterase {Vibrio harvey | 99.79 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.79 | |
| d2pbla1 | 261 | Uncharacterized protein TM1040_2492 {Silicibacter | 99.77 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.76 | |
| d2fuka1 | 218 | XC6422 protein {Xanthomonas campestris [TaxId: 339 | 99.72 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 99.71 | |
| d1lnsa3 | 405 | X-Prolyl dipeptidyl aminopeptidase PepX, middle do | 99.7 | |
| d1jfra_ | 260 | Lipase {Streptomyces exfoliatus [TaxId: 1905]} | 99.7 | |
| d1ju3a2 | 347 | Bacterial cocaine esterase N-terminal domain {Rhod | 99.69 | |
| d1dina_ | 233 | Dienelactone hydrolase {Pseudomonas sp., B13 [TaxI | 99.69 | |
| d1imja_ | 208 | Ccg1/TafII250-interacting factor B (Cib) {Human (H | 99.67 | |
| d1ufoa_ | 238 | Hypothetical protein TT1662 {Thermus thermophilus | 99.66 | |
| d1mpxa2 | 381 | Alpha-amino acid ester hydrolase {Xanthomonas citr | 99.66 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.65 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.64 | |
| d1k8qa_ | 377 | Gastric lipase {Dog (Canis familiaris) [TaxId: 961 | 99.64 | |
| d1q0ra_ | 297 | Aclacinomycin methylesterase RdmC {Streptomyces pu | 99.63 | |
| d1vkha_ | 263 | Putative serine hydrolase Ydr428c {Baker's yeast ( | 99.63 | |
| d1c4xa_ | 281 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.62 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.61 | |
| d2h1ia1 | 202 | Carboxylesterase {Bacillus cereus [TaxId: 1396]} | 99.59 | |
| d1mtza_ | 290 | Tricorn interacting factor F1 {Archaeon Thermoplas | 99.58 | |
| d2b9va2 | 385 | Alpha-amino acid ester hydrolase {Acetobacter past | 99.57 | |
| d1a8qa_ | 274 | Bromoperoxidase A1 {Streptomyces aureofaciens [Tax | 99.57 | |
| d1uk8a_ | 271 | Meta-cleavage product hydrolase CumD {Pseudomonas | 99.56 | |
| d1b6ga_ | 310 | Haloalkane dehalogenase {Xanthobacter autotrophicu | 99.55 | |
| d2rhwa1 | 283 | 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolas | 99.55 | |
| d1zd3a2 | 322 | Mammalian epoxide hydrolase, C-terminal domain {Hu | 99.55 | |
| d1a88a_ | 275 | Chloroperoxidase L {Streptomyces lividans [TaxId: | 99.55 | |
| d1tqha_ | 242 | Carboxylesterase Est {Bacillus stearothermophilus | 99.54 | |
| d1bn7a_ | 291 | Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1 | 99.54 | |
| d1jkma_ | 358 | Carboxylesterase {Bacillus subtilis, brefeldin A e | 99.54 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.52 | |
| d1lzla_ | 317 | Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | 99.52 | |
| d1xkla_ | 258 | Salicylic acid-binding protein 2 (SABP2) {Common t | 99.52 | |
| d1azwa_ | 313 | Proline iminopeptidase {Xanthomonas campestris, pv | 99.51 | |
| d1uxoa_ | 186 | Hypothetical protein YdeN {Bacillus subtilis [TaxI | 99.51 | |
| d2i3da1 | 218 | Hypothetical protein Atu1826 {Agrobacterium tumefa | 99.51 | |
| d1j1ia_ | 268 | Meta cleavage compound hydrolase CarC {Janthinobac | 99.5 | |
| d1va4a_ | 271 | Arylesterase {Pseudomonas fluorescens [TaxId: 294] | 99.5 | |
| d3c70a1 | 256 | Hydroxynitrile lyase {Rubber tree (Hevea brasilien | 99.5 | |
| d1a8sa_ | 273 | Chloroperoxidase F {Pseudomonas fluorescens [TaxId | 99.5 | |
| d1jjia_ | 311 | Carboxylesterase {Archaeon Archaeoglobus fulgidus | 99.5 | |
| d2gzsa1 | 265 | Enterobactin and salmochelin hydrolase IroE {Esche | 99.49 | |
| d1m33a_ | 256 | Biotin biosynthesis protein BioH {Escherichia coli | 99.48 | |
| d3b5ea1 | 209 | Uncharacterized protein Mll8374 {Mesorhizobium lot | 99.48 | |
| d1fj2a_ | 229 | Acyl protein thioesterase 1 {Human (Homo sapiens) | 99.47 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.46 | |
| d1brta_ | 277 | Bromoperoxidase A2 {Streptomyces aureofaciens [Tax | 99.46 | |
| d1ehya_ | 293 | Bacterial epoxide hydrolase {Agrobacterium radioba | 99.45 | |
| d1jjfa_ | 255 | Feruloyl esterase domain of the cellulosomal xylan | 99.44 | |
| d1u4na_ | 308 | Carboxylesterase {Alicyclobacillus acidocaldarius | 99.44 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.42 | |
| d3c8da2 | 246 | Enterochelin esterase, catalytic domain {Shigella | 99.41 | |
| d1hkha_ | 279 | Gamma-lactamase {Aureobacterium sp. [TaxId: 51671] | 99.41 | |
| d1sfra_ | 288 | Antigen 85a {Mycobacterium tuberculosis [TaxId: 17 | 99.41 | |
| d1wm1a_ | 313 | Proline aminopeptidase {Serratia marcescens [TaxId | 99.41 | |
| d2r8ba1 | 203 | Uncharacterized protein Atu2452 {Agrobacterium tum | 99.39 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.35 | |
| d1mj5a_ | 298 | Haloalkane dehalogenase {Sphingomonas paucimobilis | 99.32 | |
| d1wb4a1 | 273 | Feruloyl esterase domain of the cellulosomal xylan | 99.31 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.29 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.29 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.29 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.28 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.26 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.26 | |
| d1r3da_ | 264 | Hypothetical protein VC1974 {Vibrio cholerae [TaxI | 99.25 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.25 | |
| d1auoa_ | 218 | Carboxylesterase {Pseudomonas fluorescens [TaxId: | 99.25 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.24 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.24 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.23 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.21 | |
| d1dqza_ | 280 | Antigen 85c {Mycobacterium tuberculosis [TaxId: 17 | 99.17 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.16 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.15 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.12 | |
| d1tcaa_ | 317 | Triacylglycerol lipase {Yeast (Candida antarctica) | 99.09 | |
| d1ispa_ | 179 | Lipase A {Bacillus subtilis [TaxId: 1423]} | 99.07 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.06 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.06 | |
| d1r88a_ | 267 | Antigen pt51/mpb51 {Mycobacterium tuberculosis [Ta | 99.05 | |
| d1pjaa_ | 268 | Palmitoyl protein thioesterase 2 {Human (Homo sapi | 99.04 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.04 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.04 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.03 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.0 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.99 | |
| d2vata1 | 376 | Acetyl-CoA:deacetylcephalosporin C acetyltransfera | 98.98 | |
| d2b61a1 | 357 | Homoserine O-acetyltransferase {Haemophilus influe | 98.96 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.96 | |
| d2h7ca1 | 532 | Mammalian carboxylesterase (liver carboxylesterase | 98.95 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.94 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.93 | |
| d1pv1a_ | 299 | Hypothetical esterase YJL068C {Baker's yeast (Sacc | 98.91 | |
| d1qlwa_ | 318 | A novel bacterial esterase {Alcaligenes sp. [TaxId | 98.89 | |
| d1llfa_ | 534 | Type-B carboxylesterase/lipase {Candida cylindrace | 98.89 | |
| d1cvla_ | 319 | Lipase {Chromobacterium viscosum [TaxId: 42739]} | 98.89 | |
| d1qo7a_ | 394 | Bacterial epoxide hydrolase {Aspergillus niger [Ta | 98.88 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.88 | |
| d1thga_ | 544 | Type-B carboxylesterase/lipase {Fungus (Geotrichum | 98.87 | |
| d2pl5a1 | 362 | Homoserine O-acetyltransferase {Leptospira interro | 98.87 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.87 | |
| d1jmkc_ | 230 | Surfactin synthetase, SrfA {Bacillus subtilis [Tax | 98.83 | |
| d1ex9a_ | 285 | Lipase {Pseudomonas aeruginosa [TaxId: 287]} | 98.83 | |
| d1qe3a_ | 483 | Thermophilic para-nitrobenzyl esterase (PNB estera | 98.83 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.8 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.78 | |
| d2d81a1 | 318 | Polyhydroxybutyrate depolymerase {Penicillium funi | 98.76 | |
| d1ukca_ | 517 | Esterase EstA {Aspergillus niger [TaxId: 5061]} | 98.76 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.75 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 98.74 | |
| d1ea5a_ | 532 | Acetylcholinesterase {Pacific electric ray (Torped | 98.72 | |
| d1dx4a_ | 571 | Acetylcholinesterase {Fruit fly (Drosophila melano | 98.69 | |
| d2bcea_ | 579 | Bile-salt activated lipase (cholesterol esterase) | 98.68 | |
| d1p0ia_ | 526 | Butyryl cholinesterase {Human (Homo sapiens) [TaxI | 98.68 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.68 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.67 | |
| d2ha2a1 | 542 | Acetylcholinesterase {Mouse (Mus musculus) [TaxId: | 98.65 | |
| d2h7xa1 | 283 | Picromycin polyketide synthase {Streptomyces venez | 98.6 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.57 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.56 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 98.56 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.55 | |
| d2dsta1 | 122 | Hypothetical protein TTHA1544 {Thermus thermophilu | 98.4 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.38 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.36 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.35 | |
| d1xkta_ | 286 | Fatty acid synthase {Human (Homo sapiens) [TaxId: | 98.33 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 98.31 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.24 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.19 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.19 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 98.18 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 98.18 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 98.14 | |
| d1rp1a2 | 337 | Pancreatic lipase, N-terminal domain {Dog (Canis f | 98.02 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.97 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.9 | |
| d1bu8a2 | 338 | Pancreatic lipase, N-terminal domain {Rat (Rattus | 97.87 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.87 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 97.82 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 97.78 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.66 | |
| d1mo2a_ | 255 | Erythromycin polyketide synthase {Saccharopolyspor | 97.65 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.65 | |
| d1ei9a_ | 279 | Palmitoyl protein thioesterase 1 {Cow (Bos taurus) | 97.64 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.44 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.44 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 97.43 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.35 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.28 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 97.18 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 96.82 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 96.66 | |
| g1wht.1 | 409 | Serine carboxypeptidase II {Wheat (Triticum vulgar | 96.55 | |
| d1ivya_ | 452 | Human 'protective protein', HPP {Human (Homo sapie | 96.49 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 96.26 | |
| d1ku0a_ | 388 | Lipase L1 {Bacillus stearothermophilus [TaxId: 142 | 96.16 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 95.99 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.94 | |
| d1wpxa1 | 421 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 95.45 | |
| d1ac5a_ | 483 | Serine carboxypeptidase II {Baker's yeast (Sacchar | 95.08 | |
| g1gxs.1 | 425 | Hydroxynitrile lyase {Sorghum (Sorghum bicolor) [T | 93.54 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 93.33 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 91.82 | |
| d1lgya_ | 265 | Triacylglycerol lipase {Rhizopus niveus [TaxId: 48 | 89.43 | |
| d1uwca_ | 261 | Feruloyl esterase A {Aspergillus niger [TaxId: 506 | 88.96 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 88.57 | |
| d3tgla_ | 265 | Triacylglycerol lipase {Rhizomucor miehei [TaxId: | 88.49 | |
| d1tiaa_ | 271 | Triacylglycerol lipase {Penicillium camembertii [T | 86.93 | |
| d1tiba_ | 269 | Triacylglycerol lipase {Thermomyces lanuginosus, f | 86.89 | |
| d1cexa_ | 197 | Cutinase {Fungus (Fusarium solani), subsp. pisi [T | 86.21 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 82.95 |
| >d2hu7a2 c.69.1.33 (A:322-581) Acylamino-acid-releasing enzyme, C-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acylamino-acid-releasing enzyme, C-terminal donain domain: Acylamino-acid-releasing enzyme, C-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.94 E-value=6.7e-27 Score=238.72 Aligned_cols=205 Identities=24% Similarity=0.377 Sum_probs=173.9
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
.+++.||.+|+++++.|++ ..++.|+||++|||+++.....|....+.|+++||+|+++|+||.+|+|.++.......
T Consensus 16 ~~~s~dG~~i~~~l~~p~~--~~~~~Pviv~~HGG~~~~~~~~~~~~~~~la~~G~~v~~~d~r~~~~~g~~~~~~~~~~ 93 (260)
T d2hu7a2 16 WVESFDGSRVPTYVLESGR--APTPGPTVVLVHGGPFAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGD 93 (260)
T ss_dssp EEECTTSCEEEEEEEEETT--SCSSEEEEEEECSSSSCCCCSSCCHHHHHHHHHTCEEEEECCTTCSSSCHHHHHTTTTC
T ss_pred EEECCCCCEEEEEEEeCCC--CCCCceEEEEECCCCccCCCccccHHHHHHHhhccccccceeeeccccccccccccccc
Confidence 5788899999999999974 45678999999998887767778788889999999999999999999999998888888
Q ss_pred CCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhc
Q 003886 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESY 726 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~ 726 (789)
++..+++|+.++++|+.+++ +.++++|+|+|+||++++.++..+|+.++++++.+|+.++..+..........+....
T Consensus 94 ~~~~~~~D~~~~~~~l~~~~--~~~~~~i~g~s~gg~~~~~~~~~~~~~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (260)
T d2hu7a2 94 PCGGELEDVSAAARWARESG--LASELYIMGYSYGGYMTLCALTMKPGLFKAGVAGASVVDWEEMYELSDAAFRNFIEQL 171 (260)
T ss_dssp TTTHHHHHHHHHHHHHHHTT--CEEEEEEEEETHHHHHHHHHHHHSTTSSSEEEEESCCCCHHHHHHTCCHHHHHHHHHH
T ss_pred cchhhhhhhccccccccccc--ccceeeccccccccccccchhccCCcccccccccccchhhhhhhcccccccccccccc
Confidence 88888999999999999984 7789999999999999999999999999999999999998776544332111111111
Q ss_pred cCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 727 GSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.....+.+...+|+.+++++++|+||+||++|.+||++++.+++++|++
T Consensus 172 ------------~~~~~~~~~~~~~~~~~~~~~~P~liihG~~D~~vp~~~~~~~~~~l~~ 220 (260)
T d2hu7a2 172 ------------TGGSREIMRSRSPINHVDRIKEPLALIHPQNDSRTPLKPLLRLMGELLA 220 (260)
T ss_dssp ------------HCSCHHHHHHTCGGGCGGGCCSCEEEEEETTCSSSCSHHHHHHHHHHHH
T ss_pred ------------cccccccccccchhhcccccCCCceeeecccCceecHHHHHHHHHHHHH
Confidence 1134567888999999999999999999999999999999999998854
|
| >d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=6.9e-27 Score=238.35 Aligned_cols=201 Identities=18% Similarity=0.276 Sum_probs=155.8
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc-hhh--HHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSY--SKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~--~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
.||.+|++++++|+++++++++|+||++||||++... ..| ....+.|+++||+|+++|+||++++|.++......++
T Consensus 10 ~dg~~l~~~l~~P~~~~~~~k~Pviv~~HGGp~~~~~~~~~~~~~~~~~la~~G~~vv~~d~rGs~~~g~~~~~~~~~~~ 89 (258)
T d1xfda2 10 IDDYNLPMQILKPATFTDTTHYPLLLVVDGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRL 89 (258)
T ss_dssp ETTEEECCBEEBCSSCCSSSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEECCCCTTCSSSHHHHHHTTTTCT
T ss_pred eCCeEEEEEEEECCCcCCCCceeEEEEEcCCccccCcCCCcCcchHHHHHhcCCcEEEEeccccccccchhHhhhhhccc
Confidence 4899999999999999889999999999998765432 233 2345679999999999999999999999888888888
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCC----ceeEEEEeCCccchhhhhcCCCCCcchhh
Q 003886 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD----KFVAAAARNPLCNLALMVGTTDIPDWCYV 723 (789)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~----~~~a~v~~~pv~~~~~~~~~~~~~~~~~~ 723 (789)
+..++.|+.++++++++++.+|++||+|+|+|+||+++++++...++ .+++.+..+|+..+.... .....
T Consensus 90 g~~~~~d~~~~i~~l~~~~~id~~ri~v~G~S~GG~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 163 (258)
T d1xfda2 90 GLLEEKDQMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKLYA------SAFSE 163 (258)
T ss_dssp TTHHHHHHHHHHHHHHSSSSEEEEEEEEEEETHHHHHHHHCCCCSSSTTCCCCSEEEEESCCCCTTSSB------HHHHH
T ss_pred hhHHHHHHHHhhhhhcccccccccceeccccCchHHHHHHHHhcCCcccceeeeeeeccccceeeeccc------ccccc
Confidence 88899999999999999999999999999999999999998876543 678888888765432110 00011
Q ss_pred hhccCccccccCCCCChhhHHHHHhcCccccCCCC-CCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 724 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV-KTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
..++. +. .+.+.+...++..++.++ ++|+||+||+.|.+||++++.+++++|++
T Consensus 164 ~~~~~---------~~-~~~~~~~~~s~~~~~~~~~~~p~Li~hG~~D~~vp~~~s~~~~~~l~~ 218 (258)
T d1xfda2 164 RYLGL---------HG-LDNRAYEMTKVAHRVSALEEQQFLIIHPTADEKIHFQHTAELITQLIR 218 (258)
T ss_dssp HHHCC---------CS-SCCSSTTTTCTHHHHTSCCSCEEEEEEETTCSSSCHHHHHHHHHHHHH
T ss_pred ccccc---------cc-cchHHhhccchhhhhhhhhcccccccccCCCCCcCHHHHHHHHHHHHH
Confidence 11111 00 111233455666666664 68999999999999999999999998854
|
| >d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: DPP6 catalytic domain-like domain: Dipeptidyl peptidase IV/CD26, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.93 E-value=1.4e-25 Score=228.47 Aligned_cols=207 Identities=17% Similarity=0.258 Sum_probs=168.6
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch---hhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS---SYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 643 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~---~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~ 643 (789)
.+...+|.++.+++++|+++++.+++|+||++||||++.... .+......++++||+|+.+|+||+++++..+....
T Consensus 7 ~~~~~~~~~~~~~l~lP~~~~~~kk~P~iv~~HGGp~~~~~~~~~~~~~~~~~~a~~g~~V~~~d~rg~~~~~~~~~~~~ 86 (258)
T d2bgra2 7 DFIILNETKFWYQMILPPHFDKSKKYPLLLDVYAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAI 86 (258)
T ss_dssp EEEEETTEEEEEEEEECTTCCTTSCEEEEEECCCCTTCCCCCCCCCCSHHHHHHHTTCCEEEEECCTTCSSSCHHHHGGG
T ss_pred EEEEeCCcEEEEEEEECCCcCCCCCeeEEEEEcCCCCcccCCCccCcCHHHHHHhcCCcEEEeecccccCCcchHHHHhh
Confidence 556668999999999999998899999999999986654333 22334556789999999999999999999888888
Q ss_pred CCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhh
Q 003886 644 PGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV 723 (789)
Q Consensus 644 ~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~ 723 (789)
..+++..++.|+.++++++.+++.+|.++|+++|+|+||.+++.++..+|+++++++..++......+.. ....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~i~i~G~S~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 160 (258)
T d2bgra2 87 NRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCGIAVAPVSRWEYYDS------VYTE 160 (258)
T ss_dssp TTCTTSHHHHHHHHHHHHHTTSSSEEEEEEEEEEETHHHHHHHHHHTTTCSCCSEEEEESCCCCGGGSBH------HHHH
T ss_pred hhhhhhHHHHHHHHHHHHhhhhcccccccccccCcchhhcccccccccCCCcceEEEEeecccccccccc------cccc
Confidence 8889988999999999999999999999999999999999999999999999999999888765433210 0000
Q ss_pred hhccCccccccCCCCChhhHHHHHhcCccccCCCCC-CCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 724 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVK-TPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
...+ ........+.+...+++..+.+++ +|+|++||++|.+||+.++.+++++|++
T Consensus 161 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~P~li~hG~~D~~Vp~~~s~~~~~~l~~ 217 (258)
T d2bgra2 161 RYMG--------LPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDNVHFQQSAQISKALVD 217 (258)
T ss_dssp HHHC--------CCSTTTTHHHHHHSCSGGGGGGGGGSEEEEEEETTCSSSCTHHHHHHHHHHHH
T ss_pred hhcc--------cccchhhHHHhhcccccccccccccCChheeeecCCCcccHHHHHHHHHHHHH
Confidence 1111 111234566778889998888875 7999999999999999999999999864
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=7.1e-24 Score=233.93 Aligned_cols=362 Identities=15% Similarity=0.108 Sum_probs=221.6
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
..||||++|+|..+...+=.......+|++++.+. +..+|+.... .......|.|||||++|||+++.+ +|
T Consensus 67 ~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~--~~~~l~~~~~--~~~~l~~~~wSPDG~~iafv~~~n-----l~ 137 (465)
T d1xfda1 67 EISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG--DPQSLDPPEV--SNAKLQYAGWGPKGQQLIFIFENN-----IY 137 (465)
T ss_dssp EECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC--CCEECCCTTC--CSCCCSBCCBCSSTTCEEEEETTE-----EE
T ss_pred EECCCCCeEEEEEcccceeEeeccccEEEEEccCC--ceeeccCccC--CccccceeeeccCCceEEEEecce-----EE
Confidence 46899999998765322222234568899888443 3445532221 113355799999999999999775 88
Q ss_pred EEe-cCCceeEEEecCC------CccccccCCCcc---cceeecCCCCEEEEEeecCCCCCCCccC-CCCCCCCCCcCCC
Q 003886 183 ELW-SQSQLEKEFHVPQ------TVHGSVYADGWF---EGISWNSDETLIAYVAEEPSPSKPTFSL-GSTKGGSSDKDCN 251 (789)
Q Consensus 183 ~i~-~~~~~~~~~~~~~------~~~g~v~~d~~~---~~~~wSpDg~~la~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 251 (789)
.+. .++...+++.... +..+++|.++.+ .++.|||||++|||...+..... .+.. .+..... +...
T Consensus 138 ~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~-~~~~~~~~~~~~--p~~~ 214 (465)
T d1xfda1 138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVP-IMELPTYTGSIY--PTVK 214 (465)
T ss_dssp EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSC-EEEECCCSSSSS--CCCE
T ss_pred EEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccc-eeeccccccccc--ceee
Confidence 888 5667777775321 223344544432 47889999999999987654322 2211 1111100 0000
Q ss_pred CCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCC-----CCccceEEEeeCCCCCccEEEEEeecCCceeee
Q 003886 252 SWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-----SLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLG 326 (789)
Q Consensus 252 ~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~-----~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g 326 (789)
. ..| |..|+. .....|+++|++++..+.....+. +.....+.|+||++. +++..++...
T Consensus 215 ~----~~Y-p~~G~~---np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~----~~~~~nR~q~---- 278 (465)
T d1xfda1 215 P----YHY-PKAGSE---NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKV----AVTWLNRAQN---- 278 (465)
T ss_dssp E----EEC-CBTTSC---CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEE----EEEEEETTSC----
T ss_pred e----eec-cccCCC---CCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeE----EEEEEccccc----
Confidence 0 011 111221 123579999998886654421111 123457899999986 6666655432
Q ss_pred eeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCC--CC----ccCcceecCCCCEEEEEecCCCCCCCCc
Q 003886 327 IKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTES--IS----SAFFPRFSPDGKFLVFLSAKSSVDSGAH 400 (789)
Q Consensus 327 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~--~~----~~~~p~~SpDG~~la~~s~~~~~~~g~~ 400 (789)
...|+.+|+ .+++++.+... .+ ....|.|+|||+.++|+...+.
T Consensus 279 -------~~~i~~~d~-----------------~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~------ 328 (465)
T d1xfda1 279 -------VSILTLCDA-----------------TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ------ 328 (465)
T ss_dssp -------EEEEEEEET-----------------TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC------
T ss_pred -------cceEEEEcC-----------------CCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeee------
Confidence 236888887 66776665322 11 2467999999999988754321
Q ss_pred cccceeEEeec-------CCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeC--CeEEEE
Q 003886 401 SATDSLHRIDW-------PTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG--SSQVII 471 (789)
Q Consensus 401 ~~~~~L~~~d~-------~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~--~~~~l~ 471 (789)
.+..+++.+++ .++..+++|.+.++|..+ +.|..+++.|||++..+ ...+||
T Consensus 329 ~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i-------------------~~~d~~~~~vyF~a~~~~p~~~hly 389 (465)
T d1xfda1 329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKI-------------------LAYDEKGNKIYFLSTEDLPRRRQLY 389 (465)
T ss_dssp SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEE-------------------EEEETTTTEEEEEESSSCTTCCEEE
T ss_pred cccCceEEEEeccccccCCCceeEEeccCCceEEEE-------------------EEEcCCCCEEEEEEeCCCCCceEEE
Confidence 13455666643 334446788877766553 25888999999998754 577899
Q ss_pred EEECCCCcE-EEecCC---CCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCCCCCCchhhhh
Q 003886 472 SVNVSSGEL-LRITPA---ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSPISRCPEKVKS 547 (789)
Q Consensus 472 ~~dl~tg~~-~~lt~~---~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ 547 (789)
+++++++.. ++++.. .+.+....||+++++++..+++++.|+ +.+.+..+++....| +.|+++++
T Consensus 390 ~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~-~~~~~~~~~~~~~~L----------e~N~~l~~ 458 (465)
T d1xfda1 390 SANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPM-VTVHNTTDKKKMFDL----------ETNEHVKK 458 (465)
T ss_dssp EECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCC-EEEEETTTCCEEEEE----------ECCHHHHH
T ss_pred EEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCe-EEEEECCCCCEEEEE----------cCCHHHHH
Confidence 999987654 444422 223445689999999999999998877 445554433211111 45777777
Q ss_pred ccccC
Q 003886 548 LLSSR 552 (789)
Q Consensus 548 ~l~~~ 552 (789)
.|++.
T Consensus 459 ~l~~~ 463 (465)
T d1xfda1 459 AINDR 463 (465)
T ss_dssp HHHTS
T ss_pred HHHhc
Confidence 66654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=3.3e-22 Score=204.17 Aligned_cols=263 Identities=16% Similarity=0.204 Sum_probs=194.7
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cC
Q 003886 109 TQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELW-SQ 187 (789)
Q Consensus 109 ~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~ 187 (789)
++|||+..+. .++...+||+++. +|++.++++..+ ..+..|+|||||++|||++... +..+++.+. .+
T Consensus 4 ~~iay~~~~~---~~~~~~~l~i~d~--dG~~~~~l~~~~-----~~~~sP~wSPDGk~IAf~~~~~-~~~~~~~~~~~~ 72 (269)
T d2hqsa1 4 TRIAYVVQTN---GGQFPYELRVSDY--DGYNQFVVHRSP-----QPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLAN 72 (269)
T ss_dssp CEEEEEEECS---SSSCCEEEEEEET--TSCSCEEEEEES-----SCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTT
T ss_pred CeEEEEEEeC---CCCceEEEEEEcC--CCCCcEEEecCC-----CceeeeEECCCCCEEEEEEeec-cCcceeeeeccc
Confidence 5899976553 2444568999885 666788888766 4578999999999999998775 556777777 55
Q ss_pred CceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCccccc
Q 003886 188 SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY 267 (789)
Q Consensus 188 ~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~ 267 (789)
+...+++...... ..+.|||||++|++.....
T Consensus 73 ~~~~~~~~~~~~~----------~~~~~spdg~~i~~~~~~~-------------------------------------- 104 (269)
T d2hqsa1 73 GAVRQVASFPRHN----------GAPAFSPDGSKLAFALSKT-------------------------------------- 104 (269)
T ss_dssp CCEEEEECCSSCE----------EEEEECTTSSEEEEEECTT--------------------------------------
T ss_pred CceeEEeeeeccc----------ccceecCCCCeeeEeeecC--------------------------------------
Confidence 6666666554443 5789999999999986543
Q ss_pred CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc
Q 003886 268 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (789)
Q Consensus 268 ~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (789)
....+............. .........+.|+++++. +++++...+ ...|+..++
T Consensus 105 ---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~g------------~~~i~~~~~----- 158 (269)
T d2hqsa1 105 ---GSLNLYVMDLASGQIRQV--TDGRSNNTEPTWFPDSQN----LAFTSDQAG------------RPQVYKVNI----- 158 (269)
T ss_dssp ---SSCEEEEEETTTCCEEEC--CCCSSCEEEEEECTTSSE----EEEEECTTS------------SCEEEEEET-----
T ss_pred ---Cccceeecccccccceee--eecccccccccccccccc----ceecccccC------------CceEeeeec-----
Confidence 223455555555555554 344555667899999998 888875432 237999998
Q ss_pred hhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEE
Q 003886 348 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~ 427 (789)
+++...+++........|.|||||+.+++.+.+. +...|+++|..++....+....
T Consensus 159 ------------~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~---- 214 (269)
T d2hqsa1 159 ------------NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNG--------GQQHIAKQDLATGGVQVLSSTF---- 214 (269)
T ss_dssp ------------TSSCCEECCCSSSEEEEEEECTTSSEEEEEEECS--------SCEEEEEEETTTCCEEECCCSS----
T ss_pred ------------ccccceeeecccccccccccccccceeEEEeecC--------CceeeeEeecccccceEeecCc----
Confidence 6777788888878888999999999999998775 3457888987765442221111
Q ss_pred eeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeee
Q 003886 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTL 497 (789)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~ 497 (789)
....+.|||||+.|+|.+...+...||++++++++.++|+...+....+.|||
T Consensus 215 -----------------~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 215 -----------------LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 267 (269)
T ss_dssp -----------------SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred -----------------cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence 12356799999999999999999999999999999999998877555566765
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.87 E-value=7.6e-21 Score=210.92 Aligned_cols=360 Identities=11% Similarity=0.028 Sum_probs=215.6
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 180 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (789)
...+||||++|+|......+-.......+|++++. +++..+++..+ ..+..|+|||||++|||+++.+
T Consensus 66 ~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~--~~~~~~l~~~~-----~~~~~~~~SPDG~~ia~~~~~~----- 133 (470)
T d2bgra1 66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN--KRQLITEERIP-----NNTQWVTWSPVGHKLAYVWNND----- 133 (470)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT--TTEECCSSCCC-----TTEEEEEECSSTTCEEEEETTE-----
T ss_pred eeEECCCCCEEEEEECCcceeeeccCceEEEEECC--CCcccccccCC-----ccccccccccCcceeeEeeccc-----
Confidence 34568999999998765433334456788998874 34555665554 5688999999999999998764
Q ss_pred EEEEe-cCCceeEEEecCC------CccccccCC---CcccceeecCCCCEEEEEeecCCCCCCCcc-CCCCCCCCCCcC
Q 003886 181 QFELW-SQSQLEKEFHVPQ------TVHGSVYAD---GWFEGISWNSDETLIAYVAEEPSPSKPTFS-LGSTKGGSSDKD 249 (789)
Q Consensus 181 ~~~i~-~~~~~~~~~~~~~------~~~g~v~~d---~~~~~~~wSpDg~~la~~~~~~~~~~~~~~-~~~~~~~~~~~~ 249 (789)
++..+ .+++..+++.... +..+++|.. +....+.|||||++|||...+..... .+. ............
T Consensus 134 l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~-~~~~~~~~~~~~~~~~ 212 (470)
T d2bgra1 134 IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVP-LIEYSFYSDESLQYPK 212 (470)
T ss_dssp EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCC-EEEEEECCSTTCSSCE
T ss_pred ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCc-eEEEEeeccCCCCCCe
Confidence 77777 5666666553211 111222221 22357889999999999987654321 111 000000000000
Q ss_pred CCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC----------CCCCCccceEEEeeCCCCCccEEEEEeec
Q 003886 250 CNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG----------IPKSLSVGQVVWAPLNEGLHQYLVFVGWS 319 (789)
Q Consensus 250 ~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~----------~~~~~~~~~~~wSPDg~~~~~~l~f~~~~ 319 (789)
... .. .+..|+ ......++++++.+++...+.. ...+.....+.|+++++. +++...+
T Consensus 213 ~~~----~~-~~~~g~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~----~~~~~~r 280 (470)
T d2bgra1 213 TVR----VP-YPKAGA---VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERI----SLQWLRR 280 (470)
T ss_dssp EEE----EE-CCBTTS---CCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEE----EEEEEES
T ss_pred eee----ec-cccccc---cCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCce----eEEEeec
Confidence 000 00 011111 1133578999998876543310 112234457899999986 6666544
Q ss_pred CCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCC------------CCCccCcceecCCCCEE-
Q 003886 320 SETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE------------SISSAFFPRFSPDGKFL- 386 (789)
Q Consensus 320 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~------------~~~~~~~p~~SpDG~~l- 386 (789)
..... ...++.+|. .++....+.. .......|.|+++++..
T Consensus 281 ~~~~~---------~~~~~~~d~-----------------~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 334 (470)
T d2bgra1 281 IQNYS---------VMDICDYDE-----------------SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFY 334 (470)
T ss_dssp STTEE---------EEEEEEEET-----------------TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEE
T ss_pred cCCce---------EEEEEEecC-----------------CCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcE
Confidence 43211 114555554 3444333211 11234678999988765
Q ss_pred EEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeC-
Q 003886 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG- 465 (789)
Q Consensus 387 a~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~- 465 (789)
++.+.++ +..+||+++..++..++++.+...+.. .++.|++.|||++...
T Consensus 335 ~~~s~~d--------g~~~ly~~~~~g~~~~~lt~g~~~v~~---------------------~~~~d~~~iyf~a~~~~ 385 (470)
T d2bgra1 335 KIISNEE--------GYRHICYFQIDKKDCTFITKGTWEVIG---------------------IEALTSDYLYYISNEYK 385 (470)
T ss_dssp EEEECTT--------SCEEEEEEETTCSCCEESCCSSSCEEE---------------------EEEECSSEEEEEESCGG
T ss_pred EEEeccC--------cCceeEEEeccCCceeeeccCCeeEEE---------------------EEEECCCEEEEEEecCC
Confidence 4555554 456899999988888788776655433 2556788899987643
Q ss_pred ---CeEEEEEEECCC-CcEEEecCC----CCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccCCCceeeeeccCCC
Q 003886 466 ---SSQVIISVNVSS-GELLRITPA----ESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKANKGTWSWLNVSSP 537 (789)
Q Consensus 466 ---~~~~l~~~dl~t-g~~~~lt~~----~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~~~~~~~~~~~~~~ 537 (789)
...+||++++.+ ++.++||.. ...+....|||||++++..++++..|+. .+.+..+++..+.
T Consensus 386 ~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~-~l~~~~~g~~v~~--------- 455 (470)
T d2bgra1 386 GMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLY-TLHSSVNDKGLRV--------- 455 (470)
T ss_dssp GCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEE-EEEETTTTEEEEE---------
T ss_pred CCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeE-EEEECCCCCEEEE---------
Confidence 456899999986 457777643 2234457899999999999999999985 4444443321121
Q ss_pred CCCCchhhhhcccc
Q 003886 538 ISRCPEKVKSLLSS 551 (789)
Q Consensus 538 ~~~~n~~~~~~l~~ 551 (789)
+ +.|.++.+.|+.
T Consensus 456 l-e~n~~l~~~l~~ 468 (470)
T d2bgra1 456 L-EDNSALDKMLQN 468 (470)
T ss_dssp E-ECCHHHHHHHTT
T ss_pred E-eccHHHHHHHHh
Confidence 2 347777776654
|
| >d2jbwa1 c.69.1.41 (A:8-367) 2,6-dihydropseudooxynicotine hydrolase {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: 2,6-dihydropseudooxynicotine hydrolase-like domain: 2,6-dihydropseudooxynicotine hydrolase species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=99.86 E-value=2.7e-21 Score=205.95 Aligned_cols=207 Identities=17% Similarity=0.160 Sum_probs=146.7
Q ss_pred cccCceeeEeeecccccceeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEc
Q 003886 549 LSSRQFSIMKIPVKGVSANLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVN 628 (789)
Q Consensus 549 l~~~~~~~~~i~~~~~~~~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d 628 (789)
+....++.++||+ +|.+|.|+++.|+ ..++.|+||++||..+. ...+....+.|+++||+|+++|
T Consensus 101 ~~~~~~e~v~ip~----------dg~~l~g~l~~P~---~~~~~P~Vi~~hG~~~~--~e~~~~~~~~l~~~G~~vl~~D 165 (360)
T d2jbwa1 101 LLSPPAERHELVV----------DGIPMPVYVRIPE---GPGPHPAVIMLGGLEST--KEESFQMENLVLDRGMATATFD 165 (360)
T ss_dssp GSSSCEEEEEEEE----------TTEEEEEEEECCS---SSCCEEEEEEECCSSCC--TTTTHHHHHHHHHTTCEEEEEC
T ss_pred hCCCCeEEeecCc----------CCcccceEEEecC---CCCCceEEEEeCCCCcc--HHHHHHHHHHHHhcCCEEEEEc
Confidence 3445567777763 6889999999997 45689999999996553 3455566788999999999999
Q ss_pred CCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccch
Q 003886 629 YRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708 (789)
Q Consensus 629 ~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~ 708 (789)
+|| +|.+.... ... .....++.++++++..+..+|.+||+|+|+|+||++++.++...| +++++|+.+|+.++
T Consensus 166 ~~G---~G~s~~~~--~~~-~~~~~~~~~v~d~l~~~~~vd~~rI~l~G~S~GG~~Al~~A~~~p-ri~a~V~~~~~~~~ 238 (360)
T d2jbwa1 166 GPG---QGEMFEYK--RIA-GDYEKYTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEP-RLAACISWGGFSDL 238 (360)
T ss_dssp CTT---SGGGTTTC--CSC-SCHHHHHHHHHHHHHHCTTEEEEEEEEEEETHHHHHHHHHHHHCT-TCCEEEEESCCSCS
T ss_pred ccc---ccccCccc--ccc-ccHHHHHHHHHHHHHhcccccccceeehhhhcccHHHHHHhhcCC-CcceEEEEcccccH
Confidence 998 45443211 111 112346677899999998899999999999999999999999876 69999999998775
Q ss_pred hhhhcCCCCCcchhhhhccCccccccCCCCChhh--HHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 709 ALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED--LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
....... ......+ .........+. .......+....+.+|++|+||+||++|. ||++++.++++.++
T Consensus 239 ~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~-vp~~~~~~l~~~~~ 308 (360)
T d2jbwa1 239 DYWDLET----PLTKESW-----KYVSKVDTLEEARLHVHAALETRDVLSQIACPTYILHGVHDE-VPLSFVDTVLELVP 308 (360)
T ss_dssp TTGGGSC----HHHHHHH-----HHHTTCSSHHHHHHHHHHHTCCTTTGGGCCSCEEEEEETTSS-SCTHHHHHHHHHSC
T ss_pred HHHhhhh----hhhhHHH-----HHhccCCchHHHHHHHHhhcchhhhHhhCCCCEEEEEeCCCC-cCHHHHHHHHHhcC
Confidence 4321110 0000000 00111112121 22334455666788999999999999997 79999999999986
Q ss_pred C
Q 003886 787 F 787 (789)
Q Consensus 787 ~ 787 (789)
.
T Consensus 309 ~ 309 (360)
T d2jbwa1 309 A 309 (360)
T ss_dssp G
T ss_pred C
Confidence 4
|
| >d1vlqa_ c.69.1.25 (A:) Acetyl xylan esterase TM0077 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Acetyl xylan esterase TM0077 species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=1.5e-20 Score=197.38 Aligned_cols=209 Identities=14% Similarity=0.170 Sum_probs=147.5
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhcc-CCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQS-LPG 645 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~-~~~ 645 (789)
++++.||.+|+|+++.|++ ..++.|+||++||++..... ......|+++||.|+++|+||.++.+...... ...
T Consensus 59 ~~~s~dG~~l~~~l~~P~~--~~~~~P~Vv~~hG~~~~~~~---~~~~~~~a~~G~~v~~~D~rG~G~s~~~~~~~~~~~ 133 (322)
T d1vlqa_ 59 TFSGYRGQRIKGWLLVPKL--EEEKLPCVVQYIGYNGGRGF---PHDWLFWPSMGYICFVMDTRGQGSGWLKGDTPDYPE 133 (322)
T ss_dssp EEECGGGCEEEEEEEEECC--SCSSEEEEEECCCTTCCCCC---GGGGCHHHHTTCEEEEECCTTCCCSSSCCCCCBCCS
T ss_pred EEECCCCcEEEEEEEeccC--CCCCccEEEEecCCCCCcCc---HHHHHHHHhCCCEEEEeeccccCCCCCCcccccccc
Confidence 5677899999999999975 45679999999997765322 22345789999999999999865543321110 000
Q ss_pred --------------------CCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 646 --------------------KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 646 --------------------~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
......+.|+.++++++..++.+|.+|++++|+|+||++++.++...+ +++++|+..|.
T Consensus 134 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~a~~~~~~~~~~d~~ri~~~G~S~GG~~a~~~~~~~~-~~~a~v~~~~~ 212 (322)
T d1vlqa_ 134 GPVDPQYPGFMTRGILDPRTYYYRRVFTDAVRAVEAAASFPQVDQERIVIAGGSQGGGIALAVSALSK-KAKALLCDVPF 212 (322)
T ss_dssp SSBCCCCSSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHCS-SCCEEEEESCC
T ss_pred ccccccccchhhhchhhhhhhhhHHHHHHHHHHHHHHHhcCCcCchhccccccccchHHHHHHHhcCC-CccEEEEeCCc
Confidence 000113578999999999999999999999999999999999888765 78999988876
Q ss_pred cc-hhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHH
Q 003886 706 CN-LALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYH 784 (789)
Q Consensus 706 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~ 784 (789)
.. ...+........+.....+.. ..........+.+...+|+.++.++++|+|++||++|.+||++++.+++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~~~a~~i~~P~Lv~~G~~D~~vp~~~~~~~~~~ 287 (322)
T d1vlqa_ 213 LCHFRRAVQLVDTHPYAEITNFLK-----THRDKEEIVFRTLSYFDGVNFAARAKIPALFSVGLMDNICPPSTVFAAYNY 287 (322)
T ss_dssp SCCHHHHHHHCCCTTHHHHHHHHH-----HCTTCHHHHHHHHHTTCHHHHHTTCCSCEEEEEETTCSSSCHHHHHHHHHH
T ss_pred cccHHHHHhhccccchhhHHhhhh-----cCcchhhhHHHHhhhhhHHHHHhcCCCCEEEEEeCCCCCcCHHHHHHHHHH
Confidence 53 333222222211111111100 001111233455566789999999999999999999999999999999999
Q ss_pred CC
Q 003886 785 IP 786 (789)
Q Consensus 785 l~ 786 (789)
+.
T Consensus 288 ~~ 289 (322)
T d1vlqa_ 288 YA 289 (322)
T ss_dssp CC
T ss_pred CC
Confidence 86
|
| >d1l7aa_ c.69.1.25 (A:) Cephalosporin C deacetylase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetyl xylan esterase-like domain: Cephalosporin C deacetylase species: Bacillus subtilis [TaxId: 1423]
Probab=99.84 E-value=3.5e-20 Score=193.77 Aligned_cols=210 Identities=18% Similarity=0.214 Sum_probs=145.4
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
++++.||.+|+|+++.|+ ..++.|+||++||++++ ...|...+..|+++||+|+++|+||.+..+..........
T Consensus 60 ~~~~~dg~~i~~~l~~P~---~~~~~P~vv~~HG~~~~--~~~~~~~~~~la~~Gy~vi~~D~rG~G~s~~~~~~~~~~~ 134 (318)
T d1l7aa_ 60 TYKSFGNARITGWYAVPD---KEGPHPAIVKYHGYNAS--YDGEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHA 134 (318)
T ss_dssp EEEEGGGEEEEEEEEEES---SCSCEEEEEEECCTTCC--SGGGHHHHHHHHHTTCEEEEECCTTTSSSCCCCCCSSCCS
T ss_pred EEECCCCcEEEEEEEecC---CCCCceEEEEecCCCCC--ccchHHHHHHHHHCCCEEEEEeeCCCCCCCCCcccchhhh
Confidence 566778999999999997 46789999999997764 4556677889999999999999999665443322111111
Q ss_pred CC--------------cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc-chhhh
Q 003886 647 VG--------------SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC-NLALM 711 (789)
Q Consensus 647 ~~--------------~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~-~~~~~ 711 (789)
++ ...+.|...+++++..++.+|..+|+++|+|+||.+++.++...+ +++++++..|.. ++...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~v~~~~i~~~G~s~Gg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 213 (318)
T d1l7aa_ 135 LGWMTKGILDKDTYYYRGVYLDAVRALEVISSFDEVDETRIGVTGGSQGGGLTIAAAALSD-IPKAAVADYPYLSNFERA 213 (318)
T ss_dssp SSSTTTTTTCTTTCHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHCS-CCSEEEEESCCSCCHHHH
T ss_pred hcchhhchhhhhhhhhHHHHHHHHHHHHHHHhcccccCcceEEEeeccccHHHHHHhhcCc-ccceEEEeccccccHHHH
Confidence 11 112568888999999999999999999999999999999999876 566677666653 33322
Q ss_pred hcCCCCCcchhhhhccCccccccCCCC--ChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 712 VGTTDIPDWCYVESYGSKGKDSFTESP--SVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
........+.....+.. ..... ..+........++...++++++|+||+||++|.+||++++.++++++..
T Consensus 214 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~Lii~G~~D~~vp~~~~~~~~~~l~~ 286 (318)
T d1l7aa_ 214 IDVALEQPYLEINSFFR-----RNGSPETEVQAMKTLSYFDIMNLADRVKVPVLMSIGLIDKVTPPSTVFAAYNHLET 286 (318)
T ss_dssp HHHCCSTTTTHHHHHHH-----HSCCHHHHHHHHHHHHTTCHHHHGGGCCSCEEEEEETTCSSSCHHHHHHHHHHCCS
T ss_pred hhcccccccchhhhhhh-----ccccccccccccccccccccccccccCCCCEEEEEECCCCCcCHHHHHHHHHHcCC
Confidence 21111111110000000 00000 0112223344566777899999999999999999999999999999863
|
| >d1qfma2 c.69.1.4 (A:431-710) Prolyl oligopeptidase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Prolyl oligopeptidase, C-terminal domain domain: Prolyl oligopeptidase, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.83 E-value=7.2e-20 Score=187.65 Aligned_cols=210 Identities=21% Similarity=0.233 Sum_probs=158.9
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhH-HHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG 645 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~-~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~ 645 (789)
.+++.||.+|+++++.|+++++++++|+||++|||++......+. .....++..|+.++..++++...++.........
T Consensus 11 ~~~s~DG~~i~~~l~~P~~~~~~~~~P~iv~~HGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (280)
T d1qfma2 11 FYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGIL 90 (280)
T ss_dssp EEECTTSCEEEEEEEEETTCCCSSCSCEEEECCCCTTCCCCCCCCHHHHHHHHHHCCEEEEECCTTSSTTHHHHHHTTSG
T ss_pred EEECCCCCEEEEEEEEcCCCCCCCCeEEEEEECCCCcccCCCCcchhhhhhhcccceeeeccccccccccchhhhhcccc
Confidence 678889999999999999988899999999999999876655443 3445667788999999998877766666555445
Q ss_pred CCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhh
Q 003886 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (789)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~ 725 (789)
.......++...+..+...+...+..+++++|+|.||+++..++...++.+++++...++.++...........+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (280)
T d1qfma2 91 ANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAWTTDYG 170 (280)
T ss_dssp GGTHHHHHHHHHHHHHHHHTTSCCGGGEEEEEETHHHHHHHHHHHHCGGGCSEEEEESCCCCTTTGGGSTTGGGGHHHHC
T ss_pred cccccccchhhhhhhhhhhhcccccccccccccccccchhhhhhhcccchhhheeeeccccchhhhccccccccceeccc
Confidence 55555567777778887888888899999999999999999999999999999999999988765544433322221111
Q ss_pred ccCccccccCCCCChhhHHHHHhcCcccc------CCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 726 YGSKGKDSFTESPSVEDLTRFHSKSPISH------ISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~------~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
.....+....+...++..+ +.....|+||+||++|.+||+.++.+|+++|+
T Consensus 171 ----------~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~pP~LiihG~~D~~Vp~~~s~~l~~aL~ 227 (280)
T d1qfma2 171 ----------CSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQ 227 (280)
T ss_dssp ----------CTTSHHHHHHHHHHCGGGCCCCCSSTTCCCCEEEEEEETTCCSSCTHHHHHHHHHHH
T ss_pred ----------CCCcccccccccccccccccchhhhcccCCCceEEeecccCCCCCHHHHHHHHHHHH
Confidence 1112233444444444443 33444589999999999999999999999994
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.80 E-value=1.4e-18 Score=177.70 Aligned_cols=262 Identities=9% Similarity=0.034 Sum_probs=172.0
Q ss_pred CCCC--CceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCC--CC
Q 003886 104 GNGN--GTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE--SP 179 (789)
Q Consensus 104 ~spd--g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~--~~ 179 (789)
.||| |++|+|+.. ..||++++ ++++.++||..+ +.+..|+|||||++|||++..++. ..
T Consensus 6 ~sPdi~G~~v~f~~~----------~dl~~~d~--~~g~~~~Lt~~~-----~~~~~p~~SPDG~~iaf~~~~~~~~~~~ 68 (281)
T d1k32a2 6 LNPDIHGDRIIFVCC----------DDLWEHDL--KSGSTRKIVSNL-----GVINNARFFPDGRKIAIRVMRGSSLNTA 68 (281)
T ss_dssp EEEEEETTEEEEEET----------TEEEEEET--TTCCEEEEECSS-----SEEEEEEECTTSSEEEEEEEESTTCCEE
T ss_pred cCCCCCCCEEEEEeC----------CcEEEEEC--CCCCEEEEecCC-----CcccCEEECCCCCEEEEEEeeCCCCCce
Confidence 3689 999999842 26999887 556788998876 568899999999999999865432 24
Q ss_pred eEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcce
Q 003886 180 IQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGD 258 (789)
Q Consensus 180 ~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (789)
+++.+. .+++.++++.......+.. .....+.|||||+.|+|.......
T Consensus 69 ~i~~~~~~~g~~~~lt~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~~~--------------------------- 118 (281)
T d1k32a2 69 DLYFYNGENGEIKRITYFSGKSTGRR---MFTDVAGFDPDGNLIISTDAMQPF--------------------------- 118 (281)
T ss_dssp EEEEEETTTTEEEECCCCCEEEETTE---ECSEEEEECTTCCEEEEECTTSSS---------------------------
T ss_pred EEEEEEecCCceEEeeecCCCccCcc---ccccccccCCCCCEEEEEEccCCC---------------------------
Confidence 688888 6677777665432210000 011468899999999997543211
Q ss_pred eeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceE
Q 003886 259 WEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (789)
Q Consensus 259 ~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~ 338 (789)
.....++.++.++++.+... . ......|.+|++. +++........... +... .....
T Consensus 119 -----------~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~-~~~~~ 175 (281)
T d1k32a2 119 -----------SSMTCLYRVENDGINFVPLN--L---GPATHILFADGRR----VIGRNTFELPHWKG--YRGG-TRGKI 175 (281)
T ss_dssp -----------TTCCEEEEEEGGGTEEEECC--S---CSCSEEEEETTEE----EEEESCSCCTTSTT--CCST-TCCEE
T ss_pred -----------ccceeeeeecCCCceeEEec--C---CccceeeecCCCe----EEEeeccccceeee--eccC-Cccee
Confidence 02356778888888877662 2 2235688899988 77776443321110 0001 11222
Q ss_pred EEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCC
Q 003886 339 AVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFS 418 (789)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~ 418 (789)
.... .......++........|.+++| .+++..... +..+||++|+++++.++
T Consensus 176 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--------~~~~l~~~d~~g~~~~~ 228 (281)
T d1k32a2 176 WIEV-----------------NSGAFKKIVDMSTHVSSPVIVGH--RIYFITDID--------GFGQIYSTDLDGKDLRK 228 (281)
T ss_dssp EEEE-----------------ETTEEEEEECCSSCCEEEEEETT--EEEEEECTT--------SSCEEEEEETTSCSCEE
T ss_pred eeec-----------------cccceeeccCCccccceeeeecc--ccceecccc--------cccceEEEeCCCCceEE
Confidence 2222 33445555556666778888876 566776554 35689999999988776
Q ss_pred cccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCC
Q 003886 419 SLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAE 487 (789)
Q Consensus 419 ~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~ 487 (789)
++.... .....|||||++|+|... ..||.+|+++|+.++|+...
T Consensus 229 lt~~~~---------------------~~~~~~SpDG~~I~f~~~----~~l~~~d~~~g~~~~i~~~~ 272 (281)
T d1k32a2 229 HTSFTD---------------------YYPRHLNTDGRRILFSKG----GSIYIFNPDTEKIEKIEIGD 272 (281)
T ss_dssp CCCCCS---------------------SCEEEEEESSSCEEEEET----TEEEEECTTTCCEEECCCCC
T ss_pred eecCCC---------------------cccccCcCCCCEEEEEeC----CEEEEEECCCCCEEEeccCC
Confidence 654321 112369999999999652 36999999999999997644
|
| >d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio harveyi [TaxId: 669]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Myristoyl-ACP-specific thioesterase species: Vibrio harveyi [TaxId: 669]
Probab=99.79 E-value=2.2e-19 Score=186.23 Aligned_cols=206 Identities=11% Similarity=0.107 Sum_probs=135.4
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
++..||..+++|.+.|++. ..++.|+||++||.+.. ...|...+++|+++||.|+++|+||..|.+.. .. ....
T Consensus 9 ~~~~dg~~l~~w~~~p~~~-~~~~~~~Vvi~HG~~~~--~~~~~~~a~~L~~~G~~Vi~~D~rGh~G~S~g--~~-~~~~ 82 (302)
T d1thta_ 9 LRVNNGQELHVWETPPKEN-VPFKNNTILIASGFARR--MDHFAGLAEYLSTNGFHVFRYDSLHHVGLSSG--SI-DEFT 82 (302)
T ss_dssp EEETTTEEEEEEEECCCTT-SCCCSCEEEEECTTCGG--GGGGHHHHHHHHTTTCCEEEECCCBCC-----------CCC
T ss_pred EEcCCCCEEEEEEecCcCC-CCCCCCEEEEeCCCcch--HHHHHHHHHHHHHCCCEEEEecCCCCCCCCCC--cc-cCCC
Confidence 4456899999999999753 34678999999996654 45777888999999999999999995444321 11 1111
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCC---CCCcchhhh
Q 003886 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT---DIPDWCYVE 724 (789)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~---~~~~~~~~~ 724 (789)
.....+|+.++++++.++ +.++++|+||||||.+++.+|.. ..++++|+.+|+.++....... ....... .
T Consensus 83 ~~~~~~dl~~vi~~l~~~---~~~~i~lvG~SmGG~ial~~A~~--~~v~~li~~~g~~~~~~~~~~~~~~~~~~~~~-~ 156 (302)
T d1thta_ 83 MTTGKNSLCTVYHWLQTK---GTQNIGLIAASLSARVAYEVISD--LELSFLITAVGVVNLRDTLEKALGFDYLSLPI-D 156 (302)
T ss_dssp HHHHHHHHHHHHHHHHHT---TCCCEEEEEETHHHHHHHHHTTT--SCCSEEEEESCCSCHHHHHHHHHSSCGGGSCG-G
T ss_pred HHHHHHHHHHHHHhhhcc---CCceeEEEEEchHHHHHHHHhcc--cccceeEeecccccHHHHHHHHHhhccchhhh-h
Confidence 123478899999999876 45789999999999999888764 4589999999998775432110 0000000 0
Q ss_pred hccCccccccCCCCC-hh-hHHHHH--hc----CccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 725 SYGSKGKDSFTESPS-VE-DLTRFH--SK----SPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 725 ~~~~~~~~~~~~~~~-~~-~~~~~~--~~----sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.... .. ....... .. ...... .. ++...++++++|+|++||++|..||++.+.++++.++.
T Consensus 157 ~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~PvLii~G~~D~~V~~~~~~~l~~~i~s 225 (302)
T d1thta_ 157 ELPN-DL-DFEGHKLGSEVFVRDCFEHHWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRT 225 (302)
T ss_dssp GCCS-EE-EETTEEEEHHHHHHHHHHTTCSSHHHHHHHHTTCCSCEEEEEETTCTTSCHHHHHHHHTTCTT
T ss_pred hccc-cc-cccccchhhHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEeCCCCccCHHHHHHHHHhCCC
Confidence 0000 00 0000000 00 000000 01 23456889999999999999999999999999998864
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=2.2e-17 Score=167.77 Aligned_cols=242 Identities=17% Similarity=0.151 Sum_probs=177.0
Q ss_pred CeEEEEecCCCCC--CeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCC
Q 003886 166 SKLLVVRNPENES--PIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK 242 (789)
Q Consensus 166 ~~la~~~~~~~~~--~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~ 242 (789)
.+|||+++.+++. .+||+++ ++++.++++...... ..++|||||++|||++...
T Consensus 4 ~~iay~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~----------~sP~wSPDGk~IAf~~~~~------------- 60 (269)
T d2hqsa1 4 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPL----------MSPAWSPDGSKLAYVTFES------------- 60 (269)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCE----------EEEEECTTSSEEEEEECTT-------------
T ss_pred CeEEEEEEeCCCCceEEEEEEcCCCCCcEEEecCCCce----------eeeEECCCCCEEEEEEeec-------------
Confidence 7899998776322 2678888 566777887765554 6899999999999987643
Q ss_pred CCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCc
Q 003886 243 GGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET 322 (789)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~ 322 (789)
....+++.+..++..+.+ +........+.|||||+. |+|.....+.
T Consensus 61 ----------------------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~----i~~~~~~~~~ 106 (269)
T d2hqsa1 61 ----------------------------GRSALVIQTLANGAVRQV--ASFPRHNGAPAFSPDGSK----LAFALSKTGS 106 (269)
T ss_dssp ----------------------------SSCEEEEEETTTCCEEEE--ECCSSCEEEEEECTTSSE----EEEEECTTSS
T ss_pred ----------------------------cCcceeeeecccCceeEE--eeeecccccceecCCCCe----eeEeeecCCc
Confidence 346789999999998888 455556678899999999 9998753321
Q ss_pred eeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccc
Q 003886 323 RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSA 402 (789)
Q Consensus 323 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~ 402 (789)
..+..... .................|.++++++.+++.+.+. +
T Consensus 107 ------------~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g 149 (269)
T d2hqsa1 107 ------------LNLYVMDL-----------------ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQA--------G 149 (269)
T ss_dssp ------------CEEEEEET-----------------TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTT--------S
T ss_pred ------------cceeeccc-----------------ccccceeeeeccccccccccccccccceeccccc--------C
Confidence 23444443 3344555555666677899999999999998765 3
Q ss_pred cceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE
Q 003886 403 TDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 482 (789)
Q Consensus 403 ~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~ 482 (789)
..+|++.++.++...+++.... ....+.|+|||+.+++.....+...++.++..++..+.
T Consensus 150 ~~~i~~~~~~~~~~~~~~~~~~--------------------~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~ 209 (269)
T d2hqsa1 150 RPQVYKVNINGGAPQRITWEGS--------------------QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV 209 (269)
T ss_dssp SCEEEEEETTSSCCEECCCSSS--------------------EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE
T ss_pred CceEeeeecccccceeeecccc--------------------cccccccccccceeEEEeecCCceeeeEeecccccceE
Confidence 4579999988866544432211 12245799999999999888899999999998887765
Q ss_pred ecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 483 ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 483 lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
+.... ....+.|||||+.|+|+... .....|++.++.++
T Consensus 210 ~~~~~-~~~~p~~SPDG~~i~f~s~~-~~~~~l~~~~~dg~ 248 (269)
T d2hqsa1 210 LSSTF-LDETPSLAPNGTMVIYSSSQ-GMGSVLNLVSTDGR 248 (269)
T ss_dssp CCCSS-SCEEEEECTTSSEEEEEEEE-TTEEEEEEEETTSC
T ss_pred eecCc-cccceEECCCCCEEEEEEcC-CCCcEEEEEECCCC
Confidence 54443 34457899999999998654 34567888887654
|
| >d2pbla1 c.69.1.2 (A:1-261) Uncharacterized protein TM1040_2492 {Silicibacter sp. tm1040 [TaxId: 292414]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Uncharacterized protein TM1040 2492 species: Silicibacter sp. tm1040 [TaxId: 292414]
Probab=99.77 E-value=1.1e-18 Score=176.18 Aligned_cols=171 Identities=16% Similarity=0.190 Sum_probs=131.6
Q ss_pred EEEecCCCCCCCCCcEEEEEcCCCCCCC-chhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHH
Q 003886 579 IFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT 657 (789)
Q Consensus 579 ~~~~P~~~~~~~~~P~vv~~HGg~~~~~-~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~ 657 (789)
-+|.|+ +++.|+||++|||++... ...+....+.|+++||.|+.+|||.+++.. ....++|+.+
T Consensus 53 Diy~P~----~~~~P~vv~iHGG~w~~g~~~~~~~~a~~l~~~G~~Vv~~~YRl~p~~~-----------~p~~~~d~~~ 117 (261)
T d2pbla1 53 DLFLPE----GTPVGLFVFVHGGYWMAFDKSSWSHLAVGALSKGWAVAMPSYELCPEVR-----------ISEITQQISQ 117 (261)
T ss_dssp EEECCS----SSCSEEEEEECCSTTTSCCGGGCGGGGHHHHHTTEEEEEECCCCTTTSC-----------HHHHHHHHHH
T ss_pred EEeccC----CCCCCeEEEECCCCCccCChhHhhhHHHHHhcCCceeeccccccccccc-----------CchhHHHHHH
Confidence 377885 357899999999987432 335556678899999999999999754421 1234899999
Q ss_pred HHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCC------CceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccc
Q 003886 658 AIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP------DKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 731 (789)
Q Consensus 658 ~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p------~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (789)
+++|+.++. ++||+|+|||+||+++++++.... ..++++++.+|+.++..+.... ....++
T Consensus 118 a~~~~~~~~---~~rI~l~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~---- 184 (261)
T d2pbla1 118 AVTAAAKEI---DGPIVLAGHSAGGHLVARMLDPEVLPEAVGARIRNVVPISPLSDLRPLLRTS------MNEKFK---- 184 (261)
T ss_dssp HHHHHHHHS---CSCEEEEEETHHHHHHHHTTCTTTSCHHHHTTEEEEEEESCCCCCGGGGGST------THHHHC----
T ss_pred HHHHHHhcc---cCceEEEEcchHHHHHHHHhcCcccccchhhchhhhhccccccccchhhhhh------hccccc----
Confidence 999999884 479999999999999988876432 3588999999988865432110 011111
Q ss_pred cccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 732 DSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
...+.+...||+.++.+..+|+||+||++|..++..|+.+++++|+
T Consensus 185 ---------~~~~~~~~~SP~~~~~~~~~P~li~~G~~D~~~~~~qs~~~~~~l~ 230 (261)
T d2pbla1 185 ---------MDADAAIAESPVEMQNRYDAKVTVWVGGAERPAFLDQAIWLVEAWD 230 (261)
T ss_dssp ---------CCHHHHHHTCGGGCCCCCSCEEEEEEETTSCHHHHHHHHHHHHHHT
T ss_pred ---------CCHHHHHHhCchhhcccCCCeEEEEEecCCCchHHHHHHHHHHHhC
Confidence 1345667889999999999999999999999999999999999886
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.76 E-value=2e-17 Score=174.77 Aligned_cols=188 Identities=11% Similarity=0.087 Sum_probs=133.3
Q ss_pred CCC-CCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 104 GNG-NGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 104 ~sp-dg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
.|| ||+++||.. +..++++++ .++..+++. ++ ..+..++|||||++|++.+..++ ..+
T Consensus 10 fSP~dG~~~a~~~----------~g~v~v~d~--~~~~~~~~~-~~-----~~v~~~~~spDg~~l~~~~~~~g---~~v 68 (360)
T d1k32a3 10 FSPLDGDLIAFVS----------RGQAFIQDV--SGTYVLKVP-EP-----LRIRYVRRGGDTKVAFIHGTREG---DFL 68 (360)
T ss_dssp EEECGGGCEEEEE----------TTEEEEECT--TSSBEEECS-CC-----SCEEEEEECSSSEEEEEEEETTE---EEE
T ss_pred ccCCCCCEEEEEE----------CCeEEEEEC--CCCcEEEcc-CC-----CCEEEEEECCCCCEEEEEEcCCC---CEE
Confidence 468 999999964 236788776 444555553 22 46889999999999999876542 234
Q ss_pred EEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceee
Q 003886 183 ELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (789)
Q Consensus 183 ~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (789)
.+| .+++.+++......+ ..++|||||++|++...+
T Consensus 69 ~v~d~~~~~~~~~~~~~~~v----------~~~~~spdg~~l~~~~~~-------------------------------- 106 (360)
T d1k32a3 69 GIYDYRTGKAEKFEENLGNV----------FAMGVDRNGKFAVVANDR-------------------------------- 106 (360)
T ss_dssp EEEETTTCCEEECCCCCCSE----------EEEEECTTSSEEEEEETT--------------------------------
T ss_pred EEEECCCCcEEEeeCCCceE----------Eeeeecccccccceeccc--------------------------------
Confidence 455 455555443333333 689999999999986432
Q ss_pred CCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEE
Q 003886 261 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (789)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (789)
..+++|++++++...+. .........++|||||+. |+|.......... ......++++
T Consensus 107 ------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~----la~~~~~~~~~~~-----~~~~~~~~v~ 164 (360)
T d1k32a3 107 ------------FEIMTVDLETGKPTVIE-RSREAMITDFTISDNSRF----IAYGFPLKHGETD-----GYVMQAIHVY 164 (360)
T ss_dssp ------------SEEEEEETTTCCEEEEE-ECSSSCCCCEEECTTSCE----EEEEEEECSSTTC-----SCCEEEEEEE
T ss_pred ------------cccccccccccceeeee-ecccccccchhhccceee----eeeecccccccee-----eccccceeee
Confidence 57899999998876663 233446678999999999 9998754331111 1123367888
Q ss_pred ecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 341 RVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
++ .+++...++.+......+.|||||++|++.+.+.
T Consensus 165 d~-----------------~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~ 200 (360)
T d1k32a3 165 DM-----------------EGRKIFAATTENSHDYAPAFDADSKNLYYLSYRS 200 (360)
T ss_dssp ET-----------------TTTEEEECSCSSSBEEEEEECTTSCEEEEEESCC
T ss_pred cc-----------------ccCceeeecccccccccccccCCCCEEEEEeCCC
Confidence 87 6777888888877788899999999999998764
|
| >d2fuka1 c.69.1.36 (A:3-220) XC6422 protein {Xanthomonas campestris [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: XC6422 protein species: Xanthomonas campestris [TaxId: 339]
Probab=99.72 E-value=1.1e-16 Score=155.49 Aligned_cols=162 Identities=12% Similarity=0.065 Sum_probs=118.5
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCC---CCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPH---SVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~---~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
+| ++++.+..|.. +...+.+++|++|+.|. ++....+....+.|+++||.|+.+||||.+..... ....
T Consensus 17 ~G-~l~~~~~~p~~-~~~~~~~~~vl~Hph~~~GG~~~~~~~~~la~~l~~~G~~vlrfd~RG~G~S~g~------~~~~ 88 (218)
T d2fuka1 17 VG-PLDVAVDLPEP-DVAVQPVTAIVCHPLSTEGGSMHNKVVTMAARALRELGITVVRFNFRSVGTSAGS------FDHG 88 (218)
T ss_dssp TE-EEEEEEECCCT-TSCCCSEEEEEECSCTTTTCSTTCHHHHHHHHHHHTTTCEEEEECCTTSTTCCSC------CCTT
T ss_pred Cc-cEEEEEEcCCC-CCCCCCcEEEEECCCCCCCcCCCChHHHHHHHHHHHcCCeEEEeecCCCccCCCc------cCcC
Confidence 45 69999998863 23345577888885332 22222344567889999999999999984332221 1223
Q ss_pred cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccC
Q 003886 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~ 728 (789)
....+|+.++++++.++ .+.++++++|+|+||.+++.++.+. ..+++|+.+|..+...
T Consensus 89 ~~~~~D~~a~~~~~~~~--~~~~~v~l~G~S~Gg~va~~~a~~~--~~~~lil~ap~~~~~~------------------ 146 (218)
T d2fuka1 89 DGEQDDLRAVAEWVRAQ--RPTDTLWLAGFSFGAYVSLRAAAAL--EPQVLISIAPPAGRWD------------------ 146 (218)
T ss_dssp THHHHHHHHHHHHHHHH--CTTSEEEEEEETHHHHHHHHHHHHH--CCSEEEEESCCBTTBC------------------
T ss_pred cchHHHHHHHHHHHhhc--ccCceEEEEEEcccchhhhhhhccc--ccceEEEeCCcccchh------------------
Confidence 45688999999999987 4678999999999999999888864 4789999888643100
Q ss_pred ccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 729 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
+ ...++.+|+|+|||++|..||++++.+++++++.
T Consensus 147 -----~-------------------~~~~~~~P~Lvi~G~~D~~vp~~~~~~l~~~~~~ 181 (218)
T d2fuka1 147 -----F-------------------SDVQPPAQWLVIQGDADEIVDPQAVYDWLETLEQ 181 (218)
T ss_dssp -----C-------------------TTCCCCSSEEEEEETTCSSSCHHHHHHHHTTCSS
T ss_pred -----h-------------------hccccccceeeEecCCCcCcCHHHHHHHHHHccC
Confidence 0 0124568999999999999999999999988765
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.71 E-value=2.9e-16 Score=160.14 Aligned_cols=251 Identities=14% Similarity=0.110 Sum_probs=160.9
Q ss_pred EeCCC--CCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCc
Q 003886 160 VPSPS--GSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 236 (789)
Q Consensus 160 ~~SPd--G~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 236 (789)
.+||| |++|||+++++ ||+++ .+++.++++..+... ..++|||||++|||+.......
T Consensus 5 ~~sPdi~G~~v~f~~~~d-----l~~~d~~~g~~~~Lt~~~~~~----------~~p~~SPDG~~iaf~~~~~~~~---- 65 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCDD-----LWEHDLKSGSTRKIVSNLGVI----------NNARFFPDGRKIAIRVMRGSSL---- 65 (281)
T ss_dssp CEEEEEETTEEEEEETTE-----EEEEETTTCCEEEEECSSSEE----------EEEEECTTSSEEEEEEEESTTC----
T ss_pred ccCCCCCCCEEEEEeCCc-----EEEEECCCCCEEEEecCCCcc----------cCEEECCCCCEEEEEEeeCCCC----
Confidence 46888 99999998764 99999 778888887765444 6899999999999987643110
Q ss_pred cCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCC-----CCccceEEEeeCCCCCcc
Q 003886 237 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-----SLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~-----~~~~~~~~wSPDg~~~~~ 311 (789)
...+||+++..+|+.++|+.... ......+.|+|||+.
T Consensus 66 ----------------------------------~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~--- 108 (281)
T d1k32a2 66 ----------------------------------NTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNL--- 108 (281)
T ss_dssp ----------------------------------CEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCE---
T ss_pred ----------------------------------CceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCE---
Confidence 23679999999999999841111 123457899999999
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEec
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
|+|+...... .....++.++. +++..+..... ...+.|++||+.+++...
T Consensus 109 -l~~~~~~~~~---------~~~~~~~~~~~-----------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 158 (281)
T d1k32a2 109 -IISTDAMQPF---------SSMTCLYRVEN-----------------DGINFVPLNLG---PATHILFADGRRVIGRNT 158 (281)
T ss_dssp -EEEECTTSSS---------TTCCEEEEEEG-----------------GGTEEEECCSC---SCSEEEEETTEEEEEESC
T ss_pred -EEEEEccCCC---------ccceeeeeecC-----------------CCceeEEecCC---ccceeeecCCCeEEEeec
Confidence 9998644321 12224566665 55555555433 345788888888887765
Q ss_pred CCCCCC-CCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEE
Q 003886 392 KSSVDS-GAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVI 470 (789)
Q Consensus 392 ~~~~~~-g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l 470 (789)
...... .................. ......... ....+.|+++ .+++.....+..+|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~----------~~~~~~~~~~--~~~~~~~~~~~~~l 216 (281)
T d1k32a2 159 FELPHWKGYRGGTRGKIWIEVNSGA----------FKKIVDMST----------HVSSPVIVGH--RIYFITDIDGFGQI 216 (281)
T ss_dssp SCCTTSTTCCSTTCCEEEEEEETTE----------EEEEECCSS----------CCEEEEEETT--EEEEEECTTSSCEE
T ss_pred cccceeeeeccCCcceeeeeccccc----------eeeccCCcc----------ccceeeeecc--ccceecccccccce
Confidence 542110 000000111111111111 111110000 1123345444 57777777788899
Q ss_pred EEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 003886 471 ISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 524 (789)
Q Consensus 471 ~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~ 524 (789)
|.+|+++++.++||.... .....+++||+.|+|... ..||++++.+++
T Consensus 217 ~~~d~~g~~~~~lt~~~~-~~~~~~SpDG~~I~f~~~-----~~l~~~d~~~g~ 264 (281)
T d1k32a2 217 YSTDLDGKDLRKHTSFTD-YYPRHLNTDGRRILFSKG-----GSIYIFNPDTEK 264 (281)
T ss_dssp EEEETTSCSCEECCCCCS-SCEEEEEESSSCEEEEET-----TEEEEECTTTCC
T ss_pred EEEeCCCCceEEeecCCC-cccccCcCCCCEEEEEeC-----CEEEEEECCCCC
Confidence 999999999999987654 334579999999998664 369999987654
|
| >d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase PepX, middle domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: X-Prolyl dipeptidyl aminopeptidase PepX, middle domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.70 E-value=9.9e-17 Score=172.94 Aligned_cols=210 Identities=11% Similarity=0.053 Sum_probs=146.6
Q ss_pred ecCCCe--eEEEEEEecCCCCCCCCCcEEEEEcCCCCC------------------------------------------
Q 003886 569 TKGAQK--PFEAIFVSSSHKKDCSCDPLIVVLHGGPHS------------------------------------------ 604 (789)
Q Consensus 569 ~~~~g~--~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~------------------------------------------ 604 (789)
++.||+ .|++-+++|+ ...|.|+|+..+-....
T Consensus 34 t~rDG~~d~l~~di~rP~---~~~k~Pvil~~sPY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (405)
T d1lnsa3 34 SEQRGENDLIKIQIIRPK---STEKLPVVMTASPYHLGINDKANDLALHDMNVELEEKTSHEIHVEQKLPQKLSAKAKEL 110 (405)
T ss_dssp TTCSSSCCEEEEEEEECC---CSSCEEEEEEECSSTTCCCHHHHHHHCCCCCCCCCCCCSEECCCCCCCCCCCCCCCCCC
T ss_pred CCCCCCEeEEEEEEEccC---CCCCceEEEEeCCcCCCCccccccccccccccccccccccccccccccccccccccccc
Confidence 456898 4999999998 45689999976542110
Q ss_pred ---------CCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC-------
Q 003886 605 ---------VSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA------- 668 (789)
Q Consensus 605 ---------~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~------- 668 (789)
..........++|+.+||+|+.+|.||+++.+..+ ..++..+.+|..++|+|+.++...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~GYavv~~D~RG~g~S~G~~-----~~~~~~e~~D~~~~IeWl~~~~~~~~~~~~~ 185 (405)
T d1lnsa3 111 PIVDKAPYRFTHGWTYSLNDYFLTRGFASIYVAGVGTRSSDGFQ-----TSGDYQQIYSMTAVIDWLNGRARAYTSRKKT 185 (405)
T ss_dssp CEESSCSCBCCCCCCCHHHHHHHTTTCEEEEECCTTSTTSCSCC-----CTTSHHHHHHHHHHHHHHTTSSCEESSTTCC
T ss_pred cccccccccccccccccchHHHHhCCCEEEEECCCCCCCCCCcc-----ccCChhhhhhHHHHHHHHHhccccccccccc
Confidence 00011123457999999999999999987765543 234556789999999999865322
Q ss_pred -------CCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCc-----ch--hh--hhccCc---
Q 003886 669 -------NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD-----WC--YV--ESYGSK--- 729 (789)
Q Consensus 669 -------d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~-----~~--~~--~~~~~~--- 729 (789)
...||+++|+||||+++..+|+..|..++|+|..+++.|+...+....... +. .. ......
T Consensus 186 ~~~~q~WsnGkVGm~G~SY~G~~q~~aA~~~pp~LkAivp~~~~~d~y~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (405)
T d1lnsa3 186 HEIKASWANGKVAMTGKSYLGTMAYGAATTGVEGLELILAEAGISSWYNYYRENGLVRSPGGFPGEDLDVLAALTYSRNL 265 (405)
T ss_dssp CEECCTTEEEEEEEEEETHHHHHHHHHHTTTCTTEEEEEEESCCSBHHHHHBSSSSBCCCTTCTTCCHHHHHHHHCGGGG
T ss_pred ccccccccCCeeEEEecCHHHHHHHHHHhcCCccceEEEecCccccHHHHhhcCCccccccchhhhhhhhhhcccccccc
Confidence 235899999999999999999988889999999999999865432211100 00 00 000000
Q ss_pred -------------------cccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCCC
Q 003886 730 -------------------GKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPFS 788 (789)
Q Consensus 730 -------------------~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~~ 788 (789)
........ ....+.+.+.+++.++++|++|+|+++|..|..|++.++.++|++|+++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~w~~~s~~~~~~~I~vP~L~i~Gw~D~~v~~~~~~~~y~al~~~ 341 (405)
T d1lnsa3 266 DGADFLKGNAEYEKRLAEMTAALDRKS--GDYNQFWHDRNYLINTDKVKADVLIVHGLQDWNVTPEQAYNFWKALPEG 341 (405)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHCTTT--CCCCHHHHTTBGGGGGGGCCSEEEEEEETTCCSSCTHHHHHHHHHSCTT
T ss_pred ccchhhhchhhhhhccchhhhhhhhcc--ccchhhhhhcChhhhhhcCCCCEEEEEeccCCCCCHHHHHHHHHHHHhC
Confidence 00000000 1122456778899999999999999999999999999999999999754
|
| >d1jfra_ c.69.1.16 (A:) Lipase {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Lipase domain: Lipase species: Streptomyces exfoliatus [TaxId: 1905]
Probab=99.70 E-value=8.2e-17 Score=162.68 Aligned_cols=152 Identities=16% Similarity=0.128 Sum_probs=118.0
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHH
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDV 655 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~ 655 (789)
..+.+|.|.+. .++++|+||++||+.+. ...+....+.|+++||.|+++|++|..+.. .....|+
T Consensus 37 ~~~~ly~P~~~-~~g~~P~Vv~~HG~~g~--~~~~~~~a~~lA~~Gy~V~~~d~~~~~~~~------------~~~~~d~ 101 (260)
T d1jfra_ 37 GGGTIYYPTST-ADGTFGAVVISPGFTAY--QSSIAWLGPRLASQGFVVFTIDTNTTLDQP------------DSRGRQL 101 (260)
T ss_dssp CCEEEEEESCC-TTCCEEEEEEECCTTCC--GGGTTTHHHHHHTTTCEEEEECCSSTTCCH------------HHHHHHH
T ss_pred cCEEEEEcCCC-CCCCccEEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeeCCCcCCc------------hhhHHHH
Confidence 34778889752 45688999999997664 445666788999999999999998743221 1235788
Q ss_pred HHHHHHHHHc----CCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccc
Q 003886 656 LTAIDHVIDM----GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGK 731 (789)
Q Consensus 656 ~~~i~~l~~~----~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~ 731 (789)
.++++++.+. +.+|.+||+++|||+||.+++.++...+ +++++|+.+|...
T Consensus 102 ~~~~~~l~~~~~~~~~vD~~rI~v~G~S~GG~~al~aa~~~~-~~~A~v~~~~~~~------------------------ 156 (260)
T d1jfra_ 102 LSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRT-SLKAAIPLTGWNT------------------------ 156 (260)
T ss_dssp HHHHHHHHHTSTTGGGEEEEEEEEEEETHHHHHHHHHHHHCT-TCSEEEEESCCCS------------------------
T ss_pred HHHHHHHHhhhhhhccccccceEEEeccccchHHHHHHhhhc-cchhheeeecccc------------------------
Confidence 8999998884 5589999999999999999999999765 7899998877431
Q ss_pred cccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHH-HHHHHHHCCC
Q 003886 732 DSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSN-GLQVIYHIPF 787 (789)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~-~~~l~~~l~~ 787 (789)
.....++++|+|++||++|.++|+++ ...+++.++.
T Consensus 157 --------------------~~~~~~~~~P~l~i~G~~D~~vp~~~~~~~~~~~~~~ 193 (260)
T d1jfra_ 157 --------------------DKTWPELRTPTLVVGADGDTVAPVATHSKPFYESLPG 193 (260)
T ss_dssp --------------------CCCCTTCCSCEEEEEETTCSSSCTTTTHHHHHHHSCT
T ss_pred --------------------cccccccccceeEEecCCCCCCCHHHHHHHHHHhccc
Confidence 11234678999999999999999965 5666776654
|
| >d1ju3a2 c.69.1.21 (A:5-351) Bacterial cocaine esterase N-terminal domain {Rhodococcus sp. mb1 [TaxId: 51612]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Bacterial cocaine esterase N-terminal domain species: Rhodococcus sp. mb1 [TaxId: 51612]
Probab=99.69 E-value=5.1e-17 Score=172.08 Aligned_cols=207 Identities=15% Similarity=0.142 Sum_probs=141.1
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc--hhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL--SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~--~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
+-.||.+|.+.+++|+ ..++.|+||+.||.+..... ..+....+.|+++||+|+++|.||+++.+..+ .
T Consensus 11 pmrDGv~L~~~vy~P~---~~~~~P~il~~~pyg~~~~~~~~~~~~~~~~~a~~GY~vv~~d~RG~g~S~G~~------~ 81 (347)
T d1ju3a2 11 PMRDGVRLAVDLYRPD---ADGPVPVLLVRNPYDKFDVFAWSTQSTNWLEFVRDGYAVVIQDTRGLFASEGEF------V 81 (347)
T ss_dssp ECTTSCEEEEEEEEEC---CSSCEEEEEEEESSCTTCCHHHHTTSCCTHHHHHTTCEEEEEECTTSTTCCSCC------C
T ss_pred ECCCCCEEEEEEEEcC---CCCCEEEEEEEcCCCCccccCcCcccHHHHHHHHCCCEEEEEeeCCccccCCcc------c
Confidence 3458999999999997 46789999999984332111 12233467899999999999999977665543 2
Q ss_pred CCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhh--cCCCCCc-----
Q 003886 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMV--GTTDIPD----- 719 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~--~~~~~~~----- 719 (789)
....+..|..++++|+.++++.| .||+++|+|+||++++.+|+..|..++|+|...+..|+.... .......
T Consensus 82 ~~~~~~~d~~d~i~w~~~q~~~~-grVg~~G~SygG~~~~~~A~~~~~~l~aiv~~~~~~d~~~~~~~~~gg~~~~~~~~ 160 (347)
T d1ju3a2 82 PHVDDEADAEDTLSWILEQAWCD-GNVGMFGVSYLGVTQWQAAVSGVGGLKAIAPSMASADLYRAPWYGPGGALSVEALL 160 (347)
T ss_dssp TTTTHHHHHHHHHHHHHHSTTEE-EEEEECEETHHHHHHHHHHTTCCTTEEEBCEESCCSCTCCCCCSCTTCCCCHHHHH
T ss_pred cccchhhhHHHHHHHHHhhccCC-cceEeeeccccccchhhhhhcccccceeeeeccccchhhhhhhhhcCCccchhhHH
Confidence 23445678999999999999877 799999999999999999998888999999999988753210 0000000
Q ss_pred -chhhhh------------------------cc----CccccccCCCC---------------ChhhHHHHHhcCccccC
Q 003886 720 -WCYVES------------------------YG----SKGKDSFTESP---------------SVEDLTRFHSKSPISHI 755 (789)
Q Consensus 720 -~~~~~~------------------------~~----~~~~~~~~~~~---------------~~~~~~~~~~~sp~~~~ 755 (789)
|..... .. ........... .....+.+.+.++...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 240 (347)
T d1ju3a2 161 GWSALIGTGLITSRSDARPEDAADFVQLAAILNDVAGAASVTPLAEQPLLGRLIPWVIDQVVDHPDNDESWQSISLFERL 240 (347)
T ss_dssp HHHHHHHHHHHTTSSSCCTTHHHHHHHHHHHHHCHHHHHTCSSTTCCTTHHHHCTHHHHTTTTCCSCCHHHHTTCCHHHH
T ss_pred HHHHHhhccccccccccCcchhhHHhhhhhhcccchhhhccCccccccccccchhhHHHHhhhcccchhhhhcCCHHHHh
Confidence 000000 00 00000000000 00112345667888889
Q ss_pred CCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 756 SKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 756 ~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.++++|+|+++|..|..+ ..+.++|++++.
T Consensus 241 ~~i~vP~L~i~G~~D~~~--~~~~~~~~~~~~ 270 (347)
T d1ju3a2 241 GGLATPALITAGWYDGFV--GESLRTFVAVKD 270 (347)
T ss_dssp TTCCCCEEEEEEEECTTH--HHHHHHHHHHTT
T ss_pred hcCCCCEEEeccccCCCc--chhHHHHHHhhc
Confidence 999999999999999764 456778887754
|
| >d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Dienelactone hydrolase domain: Dienelactone hydrolase species: Pseudomonas sp., B13 [TaxId: 306]
Probab=99.69 E-value=1e-16 Score=159.27 Aligned_cols=171 Identities=18% Similarity=0.175 Sum_probs=123.8
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhcc----
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQS---- 642 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~---- 642 (789)
.+++.||..+++++..|. ++++|+||++|++.+. ........+.|+++||.|+++|+.|..+.+......
T Consensus 7 ~~~~~dg~~~~a~~~~P~----~~~~P~vl~~h~~~G~--~~~~~~~a~~lA~~Gy~vl~pd~~~~~~~~~~~~~~~~~~ 80 (233)
T d1dina_ 7 SIQSYDGHTFGALVGSPA----KAPAPVIVIAQEIFGV--NAFMRETVSWLVDQGYAAVCPDLYARQAPGTALDPQDERQ 80 (233)
T ss_dssp CEECTTSCEECEEEECCS----SSSEEEEEEECCTTBS--CHHHHHHHHHHHHTTCEEEEECGGGGTSTTCBCCTTSHHH
T ss_pred EEEcCCCCEEEEEEECCC----CCCceEEEEeCCCCCC--CHHHHHHHHHHHhcCCcceeeeeccCCCcCcccChHHHHH
Confidence 667889999999999995 4689999999986542 334455678999999999999987654443321100
Q ss_pred -------CCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCC
Q 003886 643 -------LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTT 715 (789)
Q Consensus 643 -------~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~ 715 (789)
...........|+.++++++.+.+ .+..||+++|+|+||.+++.++.+ + .+.++++..|...
T Consensus 81 ~~~~~~~~~~~~~~~~~~d~~aa~~~l~~~~-~~~~~i~~~G~s~Gg~~a~~~a~~-~-~~~~~~~~~~~~~-------- 149 (233)
T d1dina_ 81 REQAYKLWQAFDMEAGVGDLEAAIRYARHQP-YSNGKVGLVGYCLGGALAFLVAAK-G-YVDRAVGYYGVGL-------- 149 (233)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHTST-TEEEEEEEEEETHHHHHHHHHHHH-T-CSSEEEEESCSCG--------
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHhCC-CCCCceEEEEecccccceeecccc-c-ccceecccccccc--------
Confidence 000111223578888999998876 456899999999999999998876 3 4666665443210
Q ss_pred CCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 716 DIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.++...+.++++|+|++||++|+.||+++..+++++++.
T Consensus 150 ---------------------------------~~~~~~~~~i~~Pvl~~~G~~D~~vp~e~~~~~~~~~~~ 188 (233)
T d1dina_ 150 ---------------------------------EKQLNKVPEVKHPALFHMGGQDHFVPAPSRQLITEGFGA 188 (233)
T ss_dssp ---------------------------------GGGGGGGGGCCSCEEEEEETTCTTSCHHHHHHHHHHHTT
T ss_pred ---------------------------------ccchhhhhccCCcceeeecccccCCCHHHHHHHHHHHhc
Confidence 011234557889999999999999999999998887654
|
| >d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Ccg1/TafII250-interacting factor B (Cib) domain: Ccg1/TafII250-interacting factor B (Cib) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1e-16 Score=156.10 Aligned_cols=159 Identities=17% Similarity=0.279 Sum_probs=111.5
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH--HHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK--SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~--~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~ 649 (789)
+|..++.....|. .+...|.||++||.+.+ ...|.. .+..|+++||.|+++|+|| +|.+...........
T Consensus 14 ~G~~i~y~~~~~~---~~~~~~~vvllHG~~~~--~~~w~~~~~~~~la~~gy~via~D~~G---~G~S~~~~~~~~~~~ 85 (208)
T d1imja_ 14 QGQALFFREALPG---SGQARFSVLLLHGIRFS--SETWQNLGTLHRLAQAGYRAVAIDLPG---LGHSKEAAAPAPIGE 85 (208)
T ss_dssp TTEEECEEEEECS---SSCCSCEEEECCCTTCC--HHHHHHHTHHHHHHHTTCEEEEECCTT---SGGGTTSCCSSCTTS
T ss_pred CCEEEEEEEecCC---CCCCCCeEEEECCCCCC--hhHHhhhHHHHHHHHcCCeEEEeeccc---ccCCCCCCcccccch
Confidence 7888887777775 45667889999997764 445544 3578999999999999998 666543322222222
Q ss_pred cc-HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccC
Q 003886 650 QD-VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGS 728 (789)
Q Consensus 650 ~~-~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~ 728 (789)
.. .+++.+.++. ++.+++.|+|||+||.+++.++.++|++++++|+.+|...-. +
T Consensus 86 ~~~~~~l~~~~~~------l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lV~~~p~~~~~----------------~-- 141 (208)
T d1imja_ 86 LAPGSFLAAVVDA------LELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDK----------------I-- 141 (208)
T ss_dssp CCCTHHHHHHHHH------HTCCSCEEEEEGGGHHHHHHHHTSTTCCCSEEEEESCSCGGG----------------S--
T ss_pred hhhhhhhhhcccc------cccccccccccCcHHHHHHHHHHHhhhhcceeeecCcccccc----------------c--
Confidence 22 2334444443 345789999999999999999999999999999998853200 0
Q ss_pred ccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 729 KGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
. ...+.++++|+|++||++|.++|.+. +..+.++
T Consensus 142 -------------~---------~~~~~~i~~P~Lii~G~~D~~~~~~~--~~~~~~~ 175 (208)
T d1imja_ 142 -------------N---------AANYASVKTPALIVYGDQDPMGQTSF--EHLKQLP 175 (208)
T ss_dssp -------------C---------HHHHHTCCSCEEEEEETTCHHHHHHH--HHHTTSS
T ss_pred -------------c---------cccccccccccccccCCcCcCCcHHH--HHHHhCC
Confidence 0 01234688999999999999887653 4445554
|
| >d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein TT1662 domain: Hypothetical protein TT1662 species: Thermus thermophilus [TaxId: 274]
Probab=99.66 E-value=5.2e-17 Score=161.91 Aligned_cols=171 Identities=15% Similarity=0.054 Sum_probs=110.7
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCc---ccHHH----HHHHHHHH
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS---QDVND----VLTAIDHV 662 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~---~~~~D----~~~~i~~l 662 (789)
++.|+||++||.+++ ...|....+.|+++||.|+++|+||.+ .+........... ....+ +.+....+
T Consensus 22 ~~~~~vl~lHG~~~~--~~~~~~~~~~la~~G~~V~~~D~~g~g---~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (238)
T d1ufoa_ 22 APKALLLALHGLQGS--KEHILALLPGYAERGFLLLAFDAPRHG---EREGPPPSSKSPRYVEEVYRVALGFKEEARRVA 96 (238)
T ss_dssp SCCEEEEEECCTTCC--HHHHHHTSTTTGGGTEEEEECCCTTST---TSSCCCCCTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCC--HHHHHHHHHHHHHCCCEEEEecCCCCC---CCcccccccccchhhhhhhhhHHhHHHHHHHHh
Confidence 467999999997664 456666677899999999999999843 3221111111111 11112 22222233
Q ss_pred HHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhh
Q 003886 663 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 742 (789)
Q Consensus 663 ~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (789)
...+.++.++++++|+|+||++++.++.++|+ ++++++..+......+. . . .......
T Consensus 97 ~~~~~~~~~~v~~~G~S~Gg~~a~~~~~~~p~-~~~~~~~~~~~~~~~~~------~--------------~-~~~~~~~ 154 (238)
T d1ufoa_ 97 EEAERRFGLPLFLAGGSLGAFVAHLLLAEGFR-PRGVLAFIGSGFPMKLP------Q--------------G-QVVEDPG 154 (238)
T ss_dssp HHHHHHHCCCEEEEEETHHHHHHHHHHHTTCC-CSCEEEESCCSSCCCCC------T--------------T-CCCCCHH
T ss_pred hhccccCCceEEEEEecccHHHHHHHHhcCcc-hhheeeeeeeccccccc------c--------------c-ccccccc
Confidence 33445778999999999999999999998875 55555554433211110 0 0 0111233
Q ss_pred HHHHHhcCccccC-CCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 743 LTRFHSKSPISHI-SKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 743 ~~~~~~~sp~~~~-~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.....+.++..+. ...++|+||+||++|..||++++.+++++|++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~P~li~~G~~D~~v~~~~~~~~~~~l~~ 200 (238)
T d1ufoa_ 155 VLALYQAPPATRGEAYGGVPLLHLHGSRDHIVPLARMEKTLEALRP 200 (238)
T ss_dssp HHHHHHSCGGGCGGGGTTCCEEEEEETTCTTTTHHHHHHHHHHHGG
T ss_pred ccchhhhhhhhhhhhhcCCCeEEEEcCCCCccCHHHHHHHHHHHHh
Confidence 4445566666654 44578999999999999999999999998864
|
| >d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase {Xanthomonas citri [TaxId: 346]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Xanthomonas citri [TaxId: 346]
Probab=99.66 E-value=1.2e-15 Score=162.93 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=108.9
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCC----CC-ch----hhHHHHHHHHHCCcEEEEEcCCCCCCCCch
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHS----VS-LS----SYSKSLAFLSSVGYSLLIVNYRGSLGFGEE 638 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~----~~-~~----~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~ 638 (789)
++-.||++|.+.+++|+ ..+++|+||+.|+.... .. .. .+....++|+++||+|+.+|.||+++.+..
T Consensus 29 i~~rDG~~L~~~v~~P~---~~~~~P~il~~~pYg~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d~RG~g~S~G~ 105 (381)
T d1mpxa2 29 IPMRDGVKLHTVIVLPK---GAKNAPIVLTRTPYDASGRTERLASPHMKDLLSAGDDVFVEGGYIRVFQDVRGKYGSEGD 105 (381)
T ss_dssp EECTTSCEEEEEEEEET---TCCSEEEEEEEESSCHHHHTCSSCCSSHHHHSCGGGHHHHHTTCEEEEEECTTSTTCCSC
T ss_pred EECCCCCEEEEEEEEeC---CCCCccEEEEEccCCCCCcccccccccccccchhHHHHHHhCCCEEEEEecCccCCCCCc
Confidence 45568999999999997 46789999999863211 00 11 112245789999999999999997766554
Q ss_pred hhcc-----CCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchh
Q 003886 639 ALQS-----LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA 709 (789)
Q Consensus 639 ~~~~-----~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~ 709 (789)
+... .....+..+++|..++++|+.+++.++..||+++|+|+||++++++|+..|+.++|+|+.+|+.|..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~D~~~~i~w~~~~~~~~~~~vg~~G~SygG~~~~~~a~~~~~~l~a~v~~~~~~d~~ 181 (381)
T d1mpxa2 106 YVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNGKVGMIGSSYEGFTVVMALTNPHPALKVAVPESPMIDGW 181 (381)
T ss_dssp CCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTSCCTTEEEEEEESCCCCTT
T ss_pred eeccchhhhhcccchhHHHHHHHHHHHHHhhcCCcCccceeeecccHHHHHHHHHHhccccccceeeeeccccccc
Confidence 4221 1223445679999999999999988899999999999999999999999899999999999998753
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.65 E-value=6.2e-15 Score=162.57 Aligned_cols=320 Identities=12% Similarity=0.045 Sum_probs=179.3
Q ss_pred ecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCC-----
Q 003886 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN----- 176 (789)
Q Consensus 102 ~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~----- 176 (789)
+.+.+||+.+ |. . ...++++++.+. .+.+.+....+......+..++|||||++|||.++...
T Consensus 22 ~~W~~d~~~~-~~--~--------~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s 89 (470)
T d2bgra1 22 LRWISDHEYL-YK--Q--------ENNILVFNAEYG-NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHS 89 (470)
T ss_dssp CEECSSSEEE-EE--S--------SSCEEEEETTTC-CEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSC
T ss_pred CEeCCCCEEE-EE--c--------CCcEEEEECCCC-CEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeec
Confidence 4456888754 32 1 124677776332 22222222222222245789999999999999875321
Q ss_pred CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCC
Q 003886 177 ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 255 (789)
Q Consensus 177 ~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (789)
....+++.+ .+++..++...+... ..++|||||++|||+.
T Consensus 90 ~~~~~~l~d~~~~~~~~l~~~~~~~----------~~~~~SPDG~~ia~~~----------------------------- 130 (470)
T d2bgra1 90 YTASYDIYDLNKRQLITEERIPNNT----------QWVTWSPVGHKLAYVW----------------------------- 130 (470)
T ss_dssp EEEEEEEEETTTTEECCSSCCCTTE----------EEEEECSSTTCEEEEE-----------------------------
T ss_pred cCceEEEEECCCCcccccccCCccc----------cccccccCcceeeEee-----------------------------
Confidence 122455555 455444333323222 6899999999999963
Q ss_pred cceeeCCcccccCCccCceEEEEEccCCceEeccCCCC-----------------CCccceEEEeeCCCCCccEEEEEee
Q 003886 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK-----------------SLSVGQVVWAPLNEGLHQYLVFVGW 318 (789)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~-----------------~~~~~~~~wSPDg~~~~~~l~f~~~ 318 (789)
+..||+++..+|+..+++.... ......+.|||||+. |+|...
T Consensus 131 ----------------~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~----ia~~~~ 190 (470)
T d2bgra1 131 ----------------NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTF----LAYAQF 190 (470)
T ss_dssp ----------------TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSE----EEEEEE
T ss_pred ----------------cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCc----cceeEe
Confidence 2568888888887776631100 012345789999999 999864
Q ss_pred cCCc-eee----------------eeee----eccCCcceEEEecccccchhhhhhhhcCCCCCCCeeec----------
Q 003886 319 SSET-RKL----------------GIKY----CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL---------- 367 (789)
Q Consensus 319 ~~~~-~~~----------------g~~~----~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L---------- 367 (789)
.... ... ...+ ..+....++++++. ++....+
T Consensus 191 d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~-----------------~~~~~~~~~~~~~~~~~ 253 (470)
T d2bgra1 191 NDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTD-----------------SLSSVTNATSIQITAPA 253 (470)
T ss_dssp ECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGG-----------------GCCSSSCCCEEEECCCH
T ss_pred cCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECC-----------------CcceeeeccccccCCcc
Confidence 3321 100 0000 11122345666652 2221111
Q ss_pred --CCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccC
Q 003886 368 --TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSS 445 (789)
Q Consensus 368 --t~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~ 445 (789)
.........+.|+++|+.+++..++.. ......++.+|..++....+...... ... . .... ....
T Consensus 254 ~~~~~~~~~~~~~w~~~~~~~~~~~~r~~-----~~~~~~~~~~d~~tg~~~~~~~~~~~-~~~---~--~~~i--~~~~ 320 (470)
T d2bgra1 254 SMLIGDHYLCDVTWATQERISLQWLRRIQ-----NYSVMDICDYDESSGRWNCLVARQHI-EMS---T--TGWV--GRFR 320 (470)
T ss_dssp HHHTSCEEEEEEEEEETTEEEEEEEESST-----TEEEEEEEEEETTTTEEEECGGGCEE-EEC---S--SSCS--SSSS
T ss_pred ccCCCCceEEEEEEcCCCceeEEEeeccC-----CceEEEEEEecCCCCcEEEEEEEeee-eee---c--ccee--eccc
Confidence 112223457899999987776665541 01223466666666554433221110 000 0 0000 0001
Q ss_pred CCCCccccCCCE-EEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCC-CCC--eEEEEeec
Q 003886 446 ILSNPWLSDGCT-MLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPV-DVP--QVKYGYFV 521 (789)
Q Consensus 446 ~~~~~ws~Dg~~-l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~-~p~--~i~~~~~~ 521 (789)
...+.|+++++. +++.+..++..+||.++.++++.++++.+...+. ..++.+++.++|+..... .|. .||++++.
T Consensus 321 ~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~-~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~ 399 (470)
T d2bgra1 321 PSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVI-GIEALTSDYLYYISNEYKGMPGGRNLYKIQLS 399 (470)
T ss_dssp CCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEE-EEEEECSSEEEEEESCGGGCTTCBEEEEEETT
T ss_pred CCCceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeEE-EEEEECCCEEEEEEecCCCCcceEEEEEEECC
Confidence 134556666654 4566677889999999999999999998776443 347788899888876543 344 48888776
Q ss_pred cc
Q 003886 522 DK 523 (789)
Q Consensus 522 ~~ 523 (789)
+.
T Consensus 400 g~ 401 (470)
T d2bgra1 400 DY 401 (470)
T ss_dssp CT
T ss_pred CC
Confidence 43
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=7e-15 Score=161.16 Aligned_cols=313 Identities=11% Similarity=0.039 Sum_probs=180.4
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCC----
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN---- 176 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~---- 176 (789)
.+.|.+|+..+ |. . ..+.++++++.+... ...++...+. .-.+....|||||++|+|..+...
T Consensus 21 ~~~W~~~~~~~-~~--~-------~~g~i~~~~~~~~~~-~~l~~~~~~~--~~~~~~~~~SpD~~~vl~~~~~~~~~r~ 87 (465)
T d1xfda1 21 EAKWISDTEFI-YR--E-------QKGTVRLWNVETNTS-TVLIEGKKIE--SLRAIRYEISPDREYALFSYNVEPIYQH 87 (465)
T ss_dssp CCCBSSSSCBC-CC--C-------SSSCEEEBCGGGCCC-EEEECTTTTT--TTTCSEEEECTTSSEEEEEESCCCCSSS
T ss_pred CCEEeCCCcEE-EE--e-------CCCcEEEEECCCCCE-EEEEcCcccc--ccccceeEECCCCCeEEEEEcccceeEe
Confidence 44567787644 32 1 123577777643322 1122222221 124567889999999999876432
Q ss_pred -CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCC
Q 003886 177 -ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK 254 (789)
Q Consensus 177 -~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (789)
....++..+ ..++..++.... ...+. ...+.|||||++|||+.
T Consensus 88 s~~~~~~i~d~~~~~~~~l~~~~-~~~~~------l~~~~wSPDG~~iafv~---------------------------- 132 (465)
T d1xfda1 88 SYTGYYVLSKIPHGDPQSLDPPE-VSNAK------LQYAGWGPKGQQLIFIF---------------------------- 132 (465)
T ss_dssp CCCSEEEEEESSSCCCEECCCTT-CCSCC------CSBCCBCSSTTCEEEEE----------------------------
T ss_pred eccccEEEEEccCCceeeccCcc-CCccc------cceeeeccCCceEEEEe----------------------------
Confidence 234566666 555555554322 11112 25689999999999983
Q ss_pred CcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCC------------------ccceEEEeeCCCCCccEEEEE
Q 003886 255 GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL------------------SVGQVVWAPLNEGLHQYLVFV 316 (789)
Q Consensus 255 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~------------------~~~~~~wSPDg~~~~~~l~f~ 316 (789)
+.+||+++..+++..+++ ..+.. ....+.|||||++ |+|.
T Consensus 133 -----------------~~nl~~~~~~~~~~~~lt-~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~----iaf~ 190 (465)
T d1xfda1 133 -----------------ENNIYYCAHVGKQAIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR----LAYA 190 (465)
T ss_dssp -----------------TTEEEEESSSSSCCEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE----EEEE
T ss_pred -----------------cceEEEEecCCCceEEEe-cccCcceeeccccchhhhhhhccccceEEECCCCCe----EEEE
Confidence 356888888877776664 11110 1235679999999 9998
Q ss_pred eecCCc-ee--------------eeeee----eccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecC--CC-----
Q 003886 317 GWSSET-RK--------------LGIKY----CYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT--ES----- 370 (789)
Q Consensus 317 ~~~~~~-~~--------------~g~~~----~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt--~~----- 370 (789)
...... .. ....| ..+....|+++|+ +++..+.+. ..
T Consensus 191 ~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~-----------------~~~~~~~~~~~~~~~~~~ 253 (465)
T d1xfda1 191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL-----------------NGPTHDLEMMPPDDPRMR 253 (465)
T ss_dssp EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES-----------------SSSCCCEECCCCCCGGGS
T ss_pred EecccccceeecccccccccceeeeeeccccCCCCCceeEEEEec-----------------CCCcEEEEEeccCcCccc
Confidence 643221 00 00111 1122235788887 333332221 11
Q ss_pred CCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccc-cCCCCC
Q 003886 371 ISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS-SSILSN 449 (789)
Q Consensus 371 ~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~-~~~~~~ 449 (789)
......+.|+|||+.+++..++. .....|+++|..++..+.+..... + + |. .....+
T Consensus 254 ~~y~~~~~W~~d~~~~~~~~nR~-------q~~~~i~~~d~~tg~~~~~~~e~~-----------~---~-wv~~~~~~p 311 (465)
T d1xfda1 254 EYYITMVKWATSTKVAVTWLNRA-------QNVSILTLCDATTGVCTKKHEDES-----------E---A-WLHRQNEEP 311 (465)
T ss_dssp SEEEEEEEESSSSEEEEEEEETT-------SCEEEEEEEETTTCCEEEEEEEEC-----------S---S-CCCCCCCCC
T ss_pred cceeeeeEEcCCCeEEEEEEccc-------cccceEEEEcCCCCcEEEEEEEcC-----------C---c-eEeccCCce
Confidence 12245678999998777666665 244579999988876543221110 0 0 11 112467
Q ss_pred ccccCCCEEEEEE--EeCCeEEEEEEEC-------CCCcEEEecCCCCCcee-EEeeecCCEEEEEEeCCCCCC--eEEE
Q 003886 450 PWLSDGCTMLLSS--IWGSSQVIISVNV-------SSGELLRITPAESNFSW-SLLTLDGDNIIAVSSSPVDVP--QVKY 517 (789)
Q Consensus 450 ~ws~Dg~~l~~~~--~~~~~~~l~~~dl-------~tg~~~~lt~~~~~~~~-~~~s~dg~~l~~~~ss~~~p~--~i~~ 517 (789)
.|++||+.++|.. ..++..++|.+.+ .++.+++||.+...+.. ..++.+++.|+|++.. ..|. .+|+
T Consensus 312 ~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~-~~p~~~hly~ 390 (465)
T d1xfda1 312 VFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE-DLPRRRQLYS 390 (465)
T ss_dssp EECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS-SCTTCCEEEE
T ss_pred eEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeC-CCCCceEEEE
Confidence 8999999887753 3456667777643 34556788887654433 3577788888888753 3444 4777
Q ss_pred Eeeccc
Q 003886 518 GYFVDK 523 (789)
Q Consensus 518 ~~~~~~ 523 (789)
+++.+.
T Consensus 391 v~l~g~ 396 (465)
T d1xfda1 391 ANTVGN 396 (465)
T ss_dssp ECSSTT
T ss_pred EECCCC
Confidence 776643
|
| >d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Gastric lipase domain: Gastric lipase species: Dog (Canis familiaris) [TaxId: 9615]
Probab=99.64 E-value=8.5e-16 Score=163.66 Aligned_cols=128 Identities=15% Similarity=0.157 Sum_probs=88.9
Q ss_pred eeecCCCeeEEEEEEe--cCCCCCCCCCcEEEEEcCCCCCCCchhhH------HHHHHHHHCCcEEEEEcCCCCCCCCch
Q 003886 567 NLTKGAQKPFEAIFVS--SSHKKDCSCDPLIVVLHGGPHSVSLSSYS------KSLAFLSSVGYSLLIVNYRGSLGFGEE 638 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~--P~~~~~~~~~P~vv~~HGg~~~~~~~~~~------~~~~~la~~Gy~V~~~d~rGs~G~G~~ 638 (789)
.++..||..|..+.+. +.+....++.|+||++||.+.+ ...|. ..+..|+++||.|+++|+|| +|.+
T Consensus 31 ~v~t~DG~~l~~~ri~~~~~~~~~~~~~~~vlllHG~~~~--~~~~~~~~~~~sla~~L~~~Gy~V~~~D~rG---~G~S 105 (377)
T d1k8qa_ 31 EVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLAS--ATNWISNLPNNSLAFILADAGYDVWLGNSRG---NTWA 105 (377)
T ss_dssp EEECTTSEEEEEEEECSCSSCCTTTTTCCEEEEECCTTCC--GGGGSSSCTTTCHHHHHHHTTCEEEECCCTT---STTS
T ss_pred EEEcCCCCEEEEEEecCCCCCCccCCCCCeEEEECCCccc--hhHHhhcCccchHHHHHHHCCCEEEEEcCCC---CCCC
Confidence 3456688777665443 3333456678999999997765 33442 25678999999999999999 4444
Q ss_pred hhccC----CCCCCc-----ccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEE
Q 003886 639 ALQSL----PGKVGS-----QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAA 701 (789)
Q Consensus 639 ~~~~~----~~~~~~-----~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~ 701 (789)
..... ...... ....|+.++++++++. ...+++.|+|||+||.+++.++.++|+.++.+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~i~~i~~~--~g~~~v~lvGhS~GG~ia~~~a~~~p~~~~~l~~ 175 (377)
T d1k8qa_ 106 RRNLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKK--TGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKT 175 (377)
T ss_dssp CEESSSCTTSTTTTCCCHHHHHHTHHHHHHHHHHHH--HCCSCEEEEEETHHHHHHHHHHHHCHHHHTTEEE
T ss_pred CCCCCCCCcchhhccCCHHHHhhhhHHHHHHHHHHH--cCCCCEEEEEecchHHHHHHHHHhhhhhhhhcee
Confidence 32111 111111 1246888899998886 3457899999999999999999999886655444
|
| >d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Aclacinomycin methylesterase RdmC domain: Aclacinomycin methylesterase RdmC species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.63 E-value=1.7e-15 Score=155.73 Aligned_cols=120 Identities=15% Similarity=0.146 Sum_probs=88.1
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhH-HHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~-~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
+|..++...+-+ ...|.||++||.+.+ ...|. ...+.|+++||.|+++|+|| +|++..... .....
T Consensus 8 g~~~i~y~~~G~------~~~p~vvl~HG~~~~--~~~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~~~~--~~~~~ 74 (297)
T d1q0ra_ 8 GDVELWSDDFGD------PADPALLLVMGGNLS--ALGWPDEFARRLADGGLHVIRYDHRD---TGRSTTRDF--AAHPY 74 (297)
T ss_dssp TTEEEEEEEESC------TTSCEEEEECCTTCC--GGGSCHHHHHHHHTTTCEEEEECCTT---STTSCCCCT--TTSCC
T ss_pred CCEEEEEEEecC------CCCCEEEEECCCCcC--hhHHHHHHHHHHHhCCCEEEEEeCCC---Ccccccccc--ccccc
Confidence 566777655533 246889999998764 44553 35678899999999999998 555432111 11123
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
.++|+.+.+..+++. ++.+++.++|||+||.+++.+|.++|++++++|+.++..
T Consensus 75 ~~~~~~~d~~~ll~~--l~~~~~~lvGhS~Gg~~a~~~a~~~P~~v~~lvli~~~~ 128 (297)
T d1q0ra_ 75 GFGELAADAVAVLDG--WGVDRAHVVGLSMGATITQVIALDHHDRLSSLTMLLGGG 128 (297)
T ss_dssp CHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred ccchhhhhhcccccc--ccccceeeccccccchhhhhhhcccccceeeeEEEcccc
Confidence 467776666666665 466789999999999999999999999999999988754
|
| >d1vkha_ c.69.1.32 (A:) Putative serine hydrolase Ydr428c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Putative serine hydrolase Ydr428c domain: Putative serine hydrolase Ydr428c species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=4.5e-16 Score=157.56 Aligned_cols=180 Identities=11% Similarity=0.137 Sum_probs=116.1
Q ss_pred CCCCCcEEEEEcCCCCCC---CchhhHHHH----HHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHH
Q 003886 588 DCSCDPLIVVLHGGPHSV---SLSSYSKSL----AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAID 660 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~---~~~~~~~~~----~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~ 660 (789)
..+++|+||++|||++.. ....|.... ..++++||.|+++|||.+++.. ....++|+.++++
T Consensus 27 ~~~~~~~vv~iHGGg~~~~~~~~~~~~~~~~~l~~~~~~~g~~v~~~dYrl~p~~~-----------~~~~~~d~~~~~~ 95 (263)
T d1vkha_ 27 SQNTREAVIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRLSPEIT-----------NPRNLYDAVSNIT 95 (263)
T ss_dssp CTTCCEEEEEECCSTTTCTTCCGGGGHHHHHHHHHHCTTCCEEEEEECCCCTTTSC-----------TTHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCccCCCCCcchHHHHHHHHHHHHHhCCeEEEEeccccCcchh-----------hhHHHHhhhhhhh
Confidence 346789999999987532 222343333 4456789999999999865531 1234899999999
Q ss_pred HHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCC-----------------ceeEEEEeCCccchhhhhcCCCCCcchhh
Q 003886 661 HVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD-----------------KFVAAAARNPLCNLALMVGTTDIPDWCYV 723 (789)
Q Consensus 661 ~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~-----------------~~~a~v~~~pv~~~~~~~~~~~~~~~~~~ 723 (789)
|+.++ .+..+|+|+|||+||.+++.++...++ .+++.+...++.++..+........+...
T Consensus 96 ~l~~~--~~~~~i~l~G~S~Gg~lal~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (263)
T d1vkha_ 96 RLVKE--KGLTNINMVGHSVGATFIWQILAALKDPQEKMSEAQLQMLGLLQIVKRVFLLDGIYSLKELLIEYPEYDCFTR 173 (263)
T ss_dssp HHHHH--HTCCCEEEEEETHHHHHHHHHHTGGGSCTTTCCHHHHHHHHHHTTEEEEEEESCCCCHHHHHHHCGGGHHHHH
T ss_pred ccccc--ccccceeeeccCcHHHHHHHHHHhccCccccccccccccccccccccccccccccccchhhhhhccccchhhh
Confidence 99997 477899999999999999998875432 35666677777666544322111111111
Q ss_pred hhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 724 ESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
..+.. ..+.+... ...... .....+.++.+|+|++||++|.+||++++.+|+++|++
T Consensus 174 ~~~~~-~~~~~~~~--~~~~~~----~~~~~~~~~~~P~lii~G~~D~~vp~~~s~~l~~~L~~ 230 (263)
T d1vkha_ 174 LAFPD-GIQMYEEE--PSRVMP----YVKKALSRFSIDMHLVHSYSDELLTLRQTNCLISCLQD 230 (263)
T ss_dssp HHCTT-CGGGCCCC--HHHHHH----HHHHHHHHHTCEEEEEEETTCSSCCTHHHHHHHHHHHH
T ss_pred ccccc-cccccccc--ccccCc----cccccccccCCCeeeeecCCCcccCHHHHHHHHHHHHH
Confidence 11111 00001000 000000 01123456789999999999999999999999999864
|
| >d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Rhodococcus sp., strain rha1 [TaxId: 1831]
Probab=99.62 E-value=6.5e-15 Score=150.07 Aligned_cols=204 Identities=20% Similarity=0.238 Sum_probs=118.1
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc-hhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
++..++....-+ ...|+||++||.+.+... ..|......|+ +||.|+++|+|| +|.+............
T Consensus 12 ~~~~~h~~~~G~------~~~p~ivllHG~~~~~~~~~~~~~~~~~L~-~~~~vi~~D~~G---~G~S~~~~~~~~~~~~ 81 (281)
T d1c4xa_ 12 GTLASHALVAGD------PQSPAVVLLHGAGPGAHAASNWRPIIPDLA-ENFFVVAPDLIG---FGQSEYPETYPGHIMS 81 (281)
T ss_dssp TTSCEEEEEESC------TTSCEEEEECCCSTTCCHHHHHGGGHHHHH-TTSEEEEECCTT---STTSCCCSSCCSSHHH
T ss_pred CCEEEEEEEEec------CCCCEEEEECCCCCCCcHHHHHHHHHHHHh-CCCEEEEEeCCC---Cccccccccccccchh
Confidence 346677655433 246899999997654332 24555566675 589999999998 6655432211111112
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccch--------hhhhcCCCCCcch-
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL--------ALMVGTTDIPDWC- 721 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~--------~~~~~~~~~~~~~- 721 (789)
..++..+.+..++++ ...+++.++|||+||.+++.+|.++|++++++|+.++.... ..+......+.+.
T Consensus 82 ~~~~~~~~i~~~i~~--~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (281)
T d1c4xa_ 82 WVGMRVEQILGLMNH--FGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPPELARLLAFYADPRLTP 159 (281)
T ss_dssp HHHHHHHHHHHHHHH--HTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSSCCSSCCHHHHHHHTGGGSCCHHH
T ss_pred hHHHhhhhccccccc--cccccceeccccccccccccccccccccccceEEeccccCccccchhHHHHHHHhhhhcccch
Confidence 234444444444443 24568999999999999999999999999999999875321 0011000000000
Q ss_pred hhhhccCccccccCCCCCh-hhH----------------HHH-H--------hcCccccCCCCCCCEEEEEeCCCCCCCh
Q 003886 722 YVESYGSKGKDSFTESPSV-EDL----------------TRF-H--------SKSPISHISKVKTPTIFLLGAQDLRVPV 775 (789)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~-~~~----------------~~~-~--------~~sp~~~~~~i~~P~Lii~G~~D~~vp~ 775 (789)
+...+.. ........+.. ... ... . ...+...+.++++|+|+++|++|..+|+
T Consensus 160 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~ 238 (281)
T d1c4xa_ 160 YRELIHS-FVYDPENFPGMEEIVKSRFEVANDPEVRRIQEVMFESMKAGMESLVIPPATLGRLPHDVLVFHGRQDRIVPL 238 (281)
T ss_dssp HHHHHHT-TSSCSTTCTTHHHHHHHHHHHHHCHHHHHHHHHHHHHHSSCCGGGCCCHHHHTTCCSCEEEEEETTCSSSCT
T ss_pred hhhhhhh-hcccccccchhhhHHHHHhhhcccchhhhhhhhhhhHHhhhhhhhccchhhhhhhccceEEEEeCCCCCcCH
Confidence 0000000 00000000000 000 000 0 0112234678999999999999999999
Q ss_pred HHHHHHHHHCCCC
Q 003886 776 SNGLQVIYHIPFS 788 (789)
Q Consensus 776 ~~~~~l~~~l~~~ 788 (789)
+.+.++.+.+++.
T Consensus 239 ~~~~~~~~~~~~~ 251 (281)
T d1c4xa_ 239 DTSLYLTKHLKHA 251 (281)
T ss_dssp HHHHHHHHHCSSE
T ss_pred HHHHHHHHHCCCC
Confidence 9999999988753
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.61 E-value=8.8e-15 Score=154.04 Aligned_cols=169 Identities=14% Similarity=0.086 Sum_probs=130.2
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
.+||+||+++|+++++ .....+..++|||||+. |++++.+.+ ..|+++|+
T Consensus 24 g~v~v~d~~~~~~~~~---~~~~~v~~~~~spDg~~----l~~~~~~~g-------------~~v~v~d~---------- 73 (360)
T d1k32a3 24 GQAFIQDVSGTYVLKV---PEPLRIRYVRRGGDTKV----AFIHGTREG-------------DFLGIYDY---------- 73 (360)
T ss_dssp TEEEEECTTSSBEEEC---SCCSCEEEEEECSSSEE----EEEEEETTE-------------EEEEEEET----------
T ss_pred CeEEEEECCCCcEEEc---cCCCCEEEEEECCCCCE----EEEEEcCCC-------------CEEEEEEC----------
Confidence 5799999999998887 23456789999999999 999885432 25889998
Q ss_pred hhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeec
Q 003886 353 ELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQC 432 (789)
Q Consensus 353 ~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~ 432 (789)
++++.++++.+...+...+|||||++|++.+... .+++|++.++....+....
T Consensus 74 -------~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~--------- 126 (360)
T d1k32a3 74 -------RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRF-----------EIMTVDLETGKPTVIERSR--------- 126 (360)
T ss_dssp -------TTCCEEECCCCCCSEEEEEECTTSSEEEEEETTS-----------EEEEEETTTCCEEEEEECS---------
T ss_pred -------CCCcEEEeeCCCceEEeeeecccccccceecccc-----------ccccccccccceeeeeecc---------
Confidence 7888999998888899999999999999887553 5899998775542211100
Q ss_pred cCCCCCccccccCCCCCccccCCCEEEEEEEeC-------CeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEE
Q 003886 433 AEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-------SSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAV 505 (789)
Q Consensus 433 ~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~-------~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~ 505 (789)
......+.|+|||++|++..... ....++.+|+.+++...++..........+++||+.|++.
T Consensus 127 ----------~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 196 (360)
T d1k32a3 127 ----------EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYL 196 (360)
T ss_dssp ----------SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEE
T ss_pred ----------cccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEE
Confidence 01245688999999998876543 3456888999999999888877655667899999998877
Q ss_pred EeC
Q 003886 506 SSS 508 (789)
Q Consensus 506 ~ss 508 (789)
...
T Consensus 197 s~~ 199 (360)
T d1k32a3 197 SYR 199 (360)
T ss_dssp ESC
T ss_pred eCC
Confidence 644
|
| >d2h1ia1 c.69.1.14 (A:1-202) Carboxylesterase {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Bacillus cereus [TaxId: 1396]
Probab=99.59 E-value=5.9e-15 Score=142.81 Aligned_cols=161 Identities=11% Similarity=0.086 Sum_probs=112.7
Q ss_pred EEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC-CC----cccHHH
Q 003886 580 FVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK-VG----SQDVND 654 (789)
Q Consensus 580 ~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~-~~----~~~~~D 654 (789)
++.|. ..+++|+||++||++++ ...|......++ .++.|++++.....+.+..+....... .. ....++
T Consensus 5 i~~~~---~~~~~P~vi~lHG~g~~--~~~~~~~~~~l~-~~~~vv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (202)
T d2h1ia1 5 VFQKG---KDTSKPVLLLLHGTGGN--ELDLLPLAEIVD-SEASVLSVRGNVLENGMPRFFRRLAEGIFDEEDLIFRTKE 78 (202)
T ss_dssp EEECC---SCTTSCEEEEECCTTCC--TTTTHHHHHHHH-TTSCEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHH
T ss_pred cCCCC---CCCCCCEEEEECCCCCC--HHHHHHHHHHhc-cCCceeeecccccCCCCccccccCCCCCCchHHHHHHHHH
Confidence 45564 45678999999997653 445655566665 578999987652221111111110000 00 112355
Q ss_pred HHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCcccccc
Q 003886 655 VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSF 734 (789)
Q Consensus 655 ~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (789)
+...++++.++..+|.+||+++|+|+||++++.++.++|+++.++++.+|.....
T Consensus 79 ~~~~i~~~~~~~~~d~~~i~~~G~S~Gg~~a~~la~~~~~~~~~~~~~~~~~~~~------------------------- 133 (202)
T d2h1ia1 79 LNEFLDEAAKEYKFDRNNIVAIGYSNGANIAASLLFHYENALKGAVLHHPMVPRR------------------------- 133 (202)
T ss_dssp HHHHHHHHHHHTTCCTTCEEEEEETHHHHHHHHHHHHCTTSCSEEEEESCCCSCS-------------------------
T ss_pred HHHHHHHHHHhccccccceeeecccccchHHHHHHHhccccccceeeecCCCCcc-------------------------
Confidence 6777777777777999999999999999999999999999999999988764210
Q ss_pred CCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 735 TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 735 ~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
+.........|++++||++|.+||++++.++++.|++
T Consensus 134 ----------------~~~~~~~~~~~~~i~~G~~D~~vp~~~~~~~~~~l~~ 170 (202)
T d2h1ia1 134 ----------------GMQLANLAGKSVFIAAGTNDPICSSAESEELKVLLEN 170 (202)
T ss_dssp ----------------SCCCCCCTTCEEEEEEESSCSSSCHHHHHHHHHHHHT
T ss_pred ----------------cccccccccchhhcccccCCCccCHHHHHHHHHHHHH
Confidence 0112234567999999999999999999999999875
|
| >d1mtza_ c.69.1.7 (A:) Tricorn interacting factor F1 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Tricorn interacting factor F1 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.58 E-value=9.4e-15 Score=148.70 Aligned_cols=124 Identities=17% Similarity=0.170 Sum_probs=86.5
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
.+-+|.+++...+-. .+..|+||++||++++ ...|...+..++++||.|+++|+|| +|.+... ...
T Consensus 7 ~~~~g~~i~y~~~g~-----~~~~~~iv~lHG~~g~--~~~~~~~~~~~~~~~~~vi~~D~~G---~G~S~~~----~~~ 72 (290)
T d1mtza_ 7 AKVNGIYIYYKLCKA-----PEEKAKLMTMHGGPGM--SHDYLLSLRDMTKEGITVLFYDQFG---CGRSEEP----DQS 72 (290)
T ss_dssp EEETTEEEEEEEECC-----SSCSEEEEEECCTTTC--CSGGGGGGGGGGGGTEEEEEECCTT---STTSCCC----CGG
T ss_pred EEECCEEEEEEEcCC-----CCCCCeEEEECCCCCc--hHHHHHHHHHHHHCCCEEEEEeCCC---Ccccccc----ccc
Confidence 344888887655543 2345889999998765 3345555667778899999999998 5554321 111
Q ss_pred cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
...+++..+.+..++++- ...+++.++|||+||.+++.++.++|++++++|+.+++..
T Consensus 73 ~~~~~~~~~~l~~ll~~l-~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~ 130 (290)
T d1mtza_ 73 KFTIDYGVEEAEALRSKL-FGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSS 130 (290)
T ss_dssp GCSHHHHHHHHHHHHHHH-HTTCCEEEEEETHHHHHHHHHHHHHGGGEEEEEEESCCSB
T ss_pred cccccchhhhhhhhhccc-ccccccceecccccchhhhhhhhcChhhheeeeecccccC
Confidence 223444444444444431 1346899999999999999999999999999999988754
|
| >d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PepX catalytic domain-like domain: Alpha-amino acid ester hydrolase species: Acetobacter pasteurianus [TaxId: 438]
Probab=99.57 E-value=1.2e-14 Score=155.44 Aligned_cols=138 Identities=12% Similarity=0.197 Sum_probs=108.6
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCC---------CCCC-chhhHHHHHHHHHCCcEEEEEcCCCCCCCCc
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGP---------HSVS-LSSYSKSLAFLSSVGYSLLIVNYRGSLGFGE 637 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~---------~~~~-~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~ 637 (789)
++-.||++|.+.+|+|+ ..+++|+||+.|+.. .... ...+....++|+++||+|+.+|.||.++.+.
T Consensus 33 ipmrDG~~L~~~v~~P~---~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Gy~vv~~d~RG~g~S~G 109 (385)
T d2b9va2 33 VPMRDGVKLYTVIVIPK---NARNAPILLTRTPYNAKGRANRVPNALTMREVLPQGDDVFVEGGYIRVFQDIRGKYGSQG 109 (385)
T ss_dssp EECTTSCEEEEEEEEET---TCCSEEEEEEEESSCHHHHTCSSTTCSSHHHHSCGGGHHHHHTTCEEEEEECTTSTTCCS
T ss_pred EECCCCCEEEEEEEEcC---CCCceeEEEEEccCCCCCccccCCcccccccccchHHHHHHhCCcEEEEEcCCcccCCCC
Confidence 35569999999999997 467899999987521 1100 0112234578999999999999999877766
Q ss_pred hhhcc-----CCCCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccch
Q 003886 638 EALQS-----LPGKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708 (789)
Q Consensus 638 ~~~~~-----~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~ 708 (789)
.+... ....++..+.+|..++|+|+.+++.++..||+++|+|+||++++.+|...|+.++|+|..++..+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~e~~D~~~~i~w~~~q~~~~~g~vg~~G~SygG~~~~~~a~~~~~~l~a~~~~~~~~d~ 185 (385)
T d2b9va2 110 DYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNGRVGMTGSSYEGFTVVMALLDPHPALKVAAPESPMVDG 185 (385)
T ss_dssp CCCTTCCCSBTTBCSSCCHHHHHHHHHHHHHHSCTTEEEEEEEEEEEHHHHHHHHHHTSCCTTEEEEEEEEECCCT
T ss_pred ceeeccccccccccchhhHHHHHHHHHHHHHhccCccccceeeccccHHHHHHHHHHhccCCcceEEEEecccccc
Confidence 55332 223455678999999999999997778899999999999999999999888999999999887765
|
| >d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A1 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.57 E-value=3.2e-14 Score=143.76 Aligned_cols=119 Identities=17% Similarity=0.193 Sum_probs=83.6
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
++..||.+++.... + ..|.||++||.+.+ ...|...+..|+++||.|+++|+|| +|.+....
T Consensus 3 ~~t~dG~~l~y~~~-------G-~g~~ivlvHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~~~----- 64 (274)
T d1a8qa_ 3 CTTRDGVEIFYKDW-------G-QGRPVVFIHGWPLN--GDAWQDQLKAVVDAGYRGIAHDRRG---HGHSTPVW----- 64 (274)
T ss_dssp EECTTSCEEEEEEE-------C-SSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCCS-----
T ss_pred EECcCCCEEEEEEE-------C-CCCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEeCCC---Cccccccc-----
Confidence 34568888774433 1 23668899997664 5678778888999999999999998 55543221
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHH-hCCCceeEEEEeCCcc
Q 003886 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLC 706 (789)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~-~~p~~~~a~v~~~pv~ 706 (789)
......+....+..+++. +..+++.++|||+||.+++.+++ +.|++++++++.++..
T Consensus 65 ~~~~~~~~~~dl~~~l~~--l~~~~~~lvGhS~Gg~~~~~~~a~~~p~~v~~~~~~~~~~ 122 (274)
T d1a8qa_ 65 DGYDFDTFADDLNDLLTD--LDLRDVTLVAHSMGGGELARYVGRHGTGRLRSAVLLSAIP 122 (274)
T ss_dssp SCCSHHHHHHHHHHHHHH--TTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCC
T ss_pred ccccchhhHHHHHHHHHH--hhhhhhcccccccccchHHHHHHHhhhccceeEEEEeccC
Confidence 122344544444444544 35678999999999998887655 4589999999988654
|
| >d1uk8a_ c.69.1.10 (A:) Meta-cleavage product hydrolase CumD {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta-cleavage product hydrolase CumD species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.56 E-value=2.3e-14 Score=144.78 Aligned_cols=198 Identities=18% Similarity=0.151 Sum_probs=119.5
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc-hhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQ 650 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~ 650 (789)
+|..++.... + ..|.||++||.+.+... ..|......| +.||.|+++|+|| +|.+... .....
T Consensus 11 ~G~~~~Y~~~-------G-~G~pvvllHG~~~~~~~~~~~~~~~~~l-~~~~~vi~~Dl~G---~G~S~~~----~~~~~ 74 (271)
T d1uk8a_ 11 AGVLTNYHDV-------G-EGQPVILIHGSGPGVSAYANWRLTIPAL-SKFYRVIAPDMVG---FGFTDRP----ENYNY 74 (271)
T ss_dssp TTEEEEEEEE-------C-CSSEEEEECCCSTTCCHHHHHTTTHHHH-TTTSEEEEECCTT---STTSCCC----TTCCC
T ss_pred CCEEEEEEEE-------e-eCCeEEEECCCCCCccHHHHHHHHHHHH-hCCCEEEEEeCCC---CCCcccc----ccccc
Confidence 7877774432 1 23678899997664322 2233345555 4699999999998 5554321 11233
Q ss_pred cHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchh-------hhhcCCCCCcch--
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLA-------LMVGTTDIPDWC-- 721 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~-------~~~~~~~~~~~~-- 721 (789)
..++....+..+++. ++.+++.++|||+||.+++.++.++|++++++|+.++..... ............
T Consensus 75 ~~~~~~~~~~~~~~~--l~~~~~~lvG~S~Gg~ia~~~a~~~p~~~~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (271)
T d1uk8a_ 75 SKDSWVDHIIGIMDA--LEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGLNAVWGYTPSIENMRN 152 (271)
T ss_dssp CHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCSCCCCCHHHHHHHTCCSCHHHHHH
T ss_pred cccccchhhhhhhhh--hcCCCceEeeccccceeehHHHHhhhccchheeecccCCCcccchhhhhhhhhccchhHHHHH
Confidence 467777777777776 466799999999999999999999999999999988754210 000000000000
Q ss_pred hhhhccC--------------------ccccccCC-CCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHH
Q 003886 722 YVESYGS--------------------KGKDSFTE-SPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780 (789)
Q Consensus 722 ~~~~~~~--------------------~~~~~~~~-~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~ 780 (789)
....+.. ...+.+.. ..................+.++++|+|+++|++|..+|++.+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~ 232 (271)
T d1uk8a_ 153 LLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLR 232 (271)
T ss_dssp HHHHHCSCGGGCCHHHHHHHHHHHTSTTHHHHHHTTSCSSTHHHHHHHCCCHHHHTTCCSCEEEEEETTCSSSCHHHHHH
T ss_pred HHHHHhhhcccchhHHHHHHHhhhhchhHHHHHHhhcchhhhhhhhhccccHHHHHhhccceeEEecCCCCCcCHHHHHH
Confidence 0000000 00000000 00000000011122234578899999999999999999999999
Q ss_pred HHHHCCC
Q 003886 781 VIYHIPF 787 (789)
Q Consensus 781 l~~~l~~ 787 (789)
+.+.+++
T Consensus 233 ~~~~~~~ 239 (271)
T d1uk8a_ 233 LGELIDR 239 (271)
T ss_dssp HHHHCTT
T ss_pred HHHhCCC
Confidence 9998865
|
| >d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter autotrophicus [TaxId: 280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Xanthobacter autotrophicus [TaxId: 280]
Probab=99.55 E-value=8.2e-14 Score=144.05 Aligned_cols=123 Identities=17% Similarity=0.213 Sum_probs=93.5
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
...+|..++..-.-+ ....|+||++||.+.+ ...|......|+++||.|+++|+|| +|.+.... ...
T Consensus 29 ~~~~g~~~~y~~~G~-----~~~~p~llllHG~~~~--~~~~~~~~~~l~~~~~~vi~~Dl~G---~G~S~~~~---~~~ 95 (310)
T d1b6ga_ 29 PGYPGLRAHYLDEGN-----SDAEDVFLCLHGEPTW--SYLYRKMIPVFAESGARVIAPDFFG---FGKSDKPV---DEE 95 (310)
T ss_dssp TTCTTCEEEEEEEEC-----TTCSCEEEECCCTTCC--GGGGTTTHHHHHHTTCEEEEECCTT---STTSCEES---CGG
T ss_pred cCCCCEEEEEEEecC-----CCCCCEEEEECCCCCc--hHHHHHHHHHhhccCceEEEeeecC---cccccccc---ccc
Confidence 345888887554433 2356899999997764 5667777889999999999999998 66554211 122
Q ss_pred cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
...++++.+.+..+++. ++.+++.|+|||+||.+++.+|.++|++++++|+.++..
T Consensus 96 ~~~~~~~~~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~A~~~P~~V~~lvl~~~~~ 151 (310)
T d1b6ga_ 96 DYTFEFHRNFLLALIER--LDLRNITLVVQDWGGFLGLTLPMADPSRFKRLIIMNACL 151 (310)
T ss_dssp GCCHHHHHHHHHHHHHH--HTCCSEEEEECTHHHHHHTTSGGGSGGGEEEEEEESCCC
T ss_pred cccccccccchhhhhhh--ccccccccccceecccccccchhhhccccceEEEEcCcc
Confidence 23567777777777765 456789999999999999999999999999999987753
|
| >d2rhwa1 c.69.1.10 (A:4-286) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) {Burkholderia xenovorans [TaxId: 36873]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (BPHD) species: Burkholderia xenovorans [TaxId: 36873]
Probab=99.55 E-value=4.4e-14 Score=143.85 Aligned_cols=185 Identities=18% Similarity=0.292 Sum_probs=108.9
Q ss_pred CcEEEEEcCCCCCCCchhhHH---HHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 003886 592 DPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~---~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (789)
.|+||++||.+.+ ...|.. ....+.++||.|+++|+|| +|.+.... .......+..+.+..++++ +
T Consensus 30 G~~ivllHG~~~~--~~~~~~~~~~l~~~~~~g~~v~~~D~~G---~G~S~~~~----~~~~~~~~~~~~i~~li~~--l 98 (283)
T d2rhwa1 30 GETVIMLHGGGPG--AGGWSNYYRNVGPFVDAGYRVILKDSPG---FNKSDAVV----MDEQRGLVNARAVKGLMDA--L 98 (283)
T ss_dssp SSEEEEECCCSTT--CCHHHHHTTTHHHHHHTTCEEEEECCTT---STTSCCCC----CSSCHHHHHHHHHHHHHHH--H
T ss_pred CCeEEEECCCCCC--hhHHHHHHHHHHHHHHCCCEEEEEeCCC---Cccccccc----ccccccchhhhhccccccc--c
Confidence 4788999997765 333433 2446778999999999998 55543211 1112223333444444444 3
Q ss_pred CCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhh-hhccC-------cccccc---CCC
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYV-ESYGS-------KGKDSF---TES 737 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~---~~~ 737 (789)
+.+++.++|||+||.+++.++.++|++++++|+.+|..-................ ..+.. .....+ ...
T Consensus 99 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (283)
T d2rhwa1 99 DIDRAHLVGNAMGGATALNFALEYPDRIGKLILMGPGGLGPSMFAPMPMEGIKLLFKLYAEPSYETLKQMLQVFLYDQSL 178 (283)
T ss_dssp TCCCEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCSCCCCCSSSCSSCHHHHHHHHHHHSCCHHHHHHHHHHHCSCGGG
T ss_pred cccccccccccchHHHHHHHHHHhhhhcceEEEeCCCcCCcchhhhhhHHHHHHHHHHhhhhhhhhHHHHHHHhhccccc
Confidence 4578999999999999999999999999999999875321111100000000000 00000 000000 000
Q ss_pred CChhhH--------------HHH---------HhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 738 PSVEDL--------------TRF---------HSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 738 ~~~~~~--------------~~~---------~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
...+.. ..+ ...+....+.++++|+|+++|++|.++|++.+.++.+.+++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~~~~ 251 (283)
T d2rhwa1 179 ITEELLQGRWEAIQRQPEHLKNFLISAQKAPLSTWDVTARLGEIKAKTFITWGRDDRFVPLDHGLKLLWNIDD 251 (283)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHHHHHHHSCGGGGCCGGGGGGCCSCEEEEEETTCSSSCTHHHHHHHHHSSS
T ss_pred CcHHHHHHHHHHhhhhhhhhhhhhhhhhhhhccccchHHHHhhCCCCEEEEEeCCCCCcCHHHHHHHHHhCCC
Confidence 000000 000 01223345778999999999999999999999999998865
|
| >d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Mammalian epoxide hydrolase, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=6.8e-14 Score=145.15 Aligned_cols=115 Identities=20% Similarity=0.343 Sum_probs=88.9
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~ 651 (789)
||.+++.... + ..|+||++||.+.+ ...|......|+++||.|+++|+|| +|.+... .......
T Consensus 20 ~g~~i~y~~~---G-----~gp~vlllHG~~~~--~~~~~~~~~~L~~~g~~vi~~D~~G---~G~S~~~---~~~~~~~ 83 (322)
T d1zd3a2 20 PRVRLHFVEL---G-----SGPAVCLCHGFPES--WYSWRYQIPALAQAGYRVLAMDMKG---YGESSAP---PEIEEYC 83 (322)
T ss_dssp TTEEEEEEEE---C-----CSSEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEEEECTT---STTSCCC---SCGGGGS
T ss_pred CCCEEEEEEE---c-----CCCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEecccc---ccccccc---ccccccc
Confidence 6777775432 1 24889999997774 5677778889999999999999998 6655422 1222335
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCC
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 704 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~p 704 (789)
.++....+..++++ ++.+++.++|||+||.+++.+|.++|++++++|+.++
T Consensus 84 ~~~~~~~i~~l~~~--l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lvl~~~ 134 (322)
T d1zd3a2 84 MEVLCKEMVTFLDK--LGLSQAVFIGHDWGGMLVWYMALFYPERVRAVASLNT 134 (322)
T ss_dssp HHHHHHHHHHHHHH--HTCSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESC
T ss_pred ccccchhhhhhhhc--ccccccccccccchHHHHHHHHHhCCccccceEEEcc
Confidence 67777777777776 4567899999999999999999999999999998875
|
| >d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans [TaxId: 1916]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase L species: Streptomyces lividans [TaxId: 1916]
Probab=99.55 E-value=2.4e-14 Score=144.70 Aligned_cols=121 Identities=17% Similarity=0.244 Sum_probs=88.2
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
++..||.+|+...+-|+ ..|+||++||.+.+ ...|......|+++||.|+++|+|| +|.+....
T Consensus 3 i~~~dG~~l~y~~~G~~------~~~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G---~G~s~~~~----- 66 (275)
T d1a88a_ 3 VTTSDGTNIFYKDWGPR------DGLPVVFHHGWPLS--ADDWDNQMLFFLSHGYRVIAHDRRG---HGRSDQPS----- 66 (275)
T ss_dssp EECTTSCEEEEEEESCT------TSCEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCCS-----
T ss_pred EEecCCCEEEEEEecCC------CCCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeccc---cccccccc-----
Confidence 45678999988777654 24678999997764 5678778889999999999999998 55543211
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCccEEEEEcCc-cHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSH-GGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~-GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
...+.+++.+.+..+++. ++.+++.++|||+ ||.++..++.++|++++++|+.++..
T Consensus 67 ~~~~~~~~~~~~~~~l~~--l~~~~~~~vg~s~~G~~~~~~~a~~~p~~v~~lvl~~~~~ 124 (275)
T d1a88a_ 67 TGHDMDTYAADVAALTEA--LDLRGAVHIGHSTGGGEVARYVARAEPGRVAKAVLVSAVP 124 (275)
T ss_dssp SCCSHHHHHHHHHHHHHH--HTCCSEEEEEETHHHHHHHHHHHHSCTTSEEEEEEESCCC
T ss_pred cccccccccccccccccc--ccccccccccccccccchhhcccccCcchhhhhhhhcccc
Confidence 123455555555555554 3557788999887 56667777888999999999988653
|
| >d1tqha_ c.69.1.29 (A:) Carboxylesterase Est {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/lipase domain: Carboxylesterase Est species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.54 E-value=9.9e-15 Score=143.58 Aligned_cols=186 Identities=16% Similarity=0.177 Sum_probs=107.5
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.+.||++||.+++ ...|....+.|+++||.|+++|+|| +|.+...... ........++...+..+... +.+
T Consensus 11 ~~~vvliHG~~~~--~~~~~~l~~~L~~~G~~v~~~D~~G---~G~s~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~ 81 (242)
T d1tqha_ 11 ERAVLLLHGFTGN--SADVRMLGRFLESKGYTCHAPIYKG---HGVPPEELVH-TGPDDWWQDVMNGYEFLKNK---GYE 81 (242)
T ss_dssp SCEEEEECCTTCC--THHHHHHHHHHHHTTCEEEECCCTT---SSSCHHHHTT-CCHHHHHHHHHHHHHHHHHH---TCC
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEeCCC---Cccccccccc-cchhHHHHHHHHHHhhhhhc---ccC
Confidence 4678899997664 5678888899999999999999998 5544332211 11112234444455554443 457
Q ss_pred cEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcch--hhhhccC------ccccccCCC-CChhh
Q 003886 672 KVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC--YVESYGS------KGKDSFTES-PSVED 742 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~-~~~~~ 742 (789)
+++++|||+||.+++.++.++|.....+++.+............ ...+. ....... ......... .....
T Consensus 82 ~~~l~G~S~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (242)
T d1tqha_ 82 KIAVAGLSLGGVFSLKLGYTVPIEGIVTMCAPMYIKSEETMYEG-VLEYAREYKKREGKSEEQIEQEMEKFKQTPMKTLK 160 (242)
T ss_dssp CEEEEEETHHHHHHHHHHTTSCCSCEEEESCCSSCCCHHHHHHH-HHHHHHHHHHHHTCCHHHHHHHHHHHTTSCCTTHH
T ss_pred ceEEEEcchHHHHhhhhcccCcccccccccccccccchhHHHHH-HHHHHHHHhhhccchhhhHHHHHhhhhhhccchhh
Confidence 89999999999999999999887654444332222110000000 00000 0000000 000000000 00011
Q ss_pred HHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 743 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 743 ~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
............+..+++|+|+++|++|..+|++.+.++++.++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~p~lii~g~~D~~~~~~~~~~~~~~~~~ 205 (242)
T d1tqha_ 161 ALQELIADVRDHLDLIYAPTFVVQARHDEMINPDSANIIYNEIES 205 (242)
T ss_dssp HHHHHHHHHHHTGGGCCSCEEEEEETTCSSSCTTHHHHHHHHCCC
T ss_pred cccccccccccccceeccccceeecccCCccCHHHHHHHHHHcCC
Confidence 111111122345778999999999999999999999999999864
|
| >d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.54 E-value=1.2e-14 Score=148.47 Aligned_cols=118 Identities=15% Similarity=0.182 Sum_probs=87.7
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCc
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~ 649 (789)
+-+|.+++....-++ ..|+||++||.+.+ ...|...+..|+ .||.|+++|+|| +|.+.... ..
T Consensus 13 ~~~g~~i~y~~~G~~------~~p~lvllHG~~~~--~~~~~~~~~~L~-~~~~vi~~d~~G---~G~S~~~~-----~~ 75 (291)
T d1bn7a_ 13 EVLGERMHYVDVGPR------DGTPVLFLHGNPTS--SYLWRNIIPHVA-PSHRCIAPDLIG---MGKSDKPD-----LD 75 (291)
T ss_dssp EETTEEEEEEEESCS------SSSCEEEECCTTCC--GGGGTTTHHHHT-TTSCEEEECCTT---STTSCCCS-----CC
T ss_pred EECCEEEEEEEeCCC------CCCeEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEEeCCC---Cccccccc-----cc
Confidence 347888886655442 34678899997765 456666677774 599999999998 55543211 13
Q ss_pred ccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
...+++.+.+..++++ ++.+++.|+|||+||.+++.++.++|++++++++.++..
T Consensus 76 ~~~~~~~~~l~~~l~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~li~~~~~~ 130 (291)
T d1bn7a_ 76 YFFDDHVRYLDAFIEA--LGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIR 130 (291)
T ss_dssp CCHHHHHHHHHHHHHH--TTCCSEEEEEEHHHHHHHHHHHHHCGGGEEEEEEEEECC
T ss_pred cchhHHHHHHhhhhhh--hccccccccccccccchhHHHHHhCCcceeeeeeecccc
Confidence 3466777777777776 466789999999999999999999999999999876543
|
| >d1jkma_ c.69.1.2 (A:) Carboxylesterase {Bacillus subtilis, brefeldin A esterase [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Bacillus subtilis, brefeldin A esterase [TaxId: 1423]
Probab=99.54 E-value=5.2e-14 Score=148.78 Aligned_cols=133 Identities=19% Similarity=0.122 Sum_probs=101.9
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc---hhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL---SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL 643 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~---~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~ 643 (789)
+++..||.++.+.+|.|++ ...+.|+||++|||++.... ..+...++.|+++||.|+++|||.+++...
T Consensus 83 ~i~~~dg~~i~~~iy~P~~--~~~~~Pviv~~HGGG~~~gs~~~~~~~~~~~~la~~g~~VvsvdYRla~~~~p------ 154 (358)
T d1jkma_ 83 TILGVDGNEITLHVFRPAG--VEGVLPGLVYTHGGGMTILTTDNRVHRRWCTDLAAAGSVVVMVDFRNAWTAEG------ 154 (358)
T ss_dssp EEECTTSCEEEEEEEEETT--CCSCEEEEEEECCSTTTSSCSSSHHHHHHHHHHHHTTCEEEEEECCCSEETTE------
T ss_pred EEeCCCCCEEEEEEEecCC--CCCCCCeEEEecCCeeeeccccccccchHHHHHHhhhheeeeeeecccccccc------
Confidence 5567789999999999985 45678999999999775432 234556788999999999999998643221
Q ss_pred CCCCCcccHHHHHHHHHHHHHc-CCCCCccEEEEEcCccHHHHHHHHHh-----CCCceeEEEEeCCccch
Q 003886 644 PGKVGSQDVNDVLTAIDHVIDM-GLANPSKVTVVGGSHGGFLTTHLIGQ-----APDKFVAAAARNPLCNL 708 (789)
Q Consensus 644 ~~~~~~~~~~D~~~~i~~l~~~-~~~d~~rv~l~G~S~GG~~a~~~~~~-----~p~~~~a~v~~~pv~~~ 708 (789)
.......++|+.++++|+.++ ..+|.+||+|+|+|.||++++.++.. ....+.+.++..|+.+.
T Consensus 155 -e~~~p~~l~D~~~a~~wl~~~~~~~~~~ri~i~G~SAGG~La~~~a~~~~~~~~~~~~~~~~~~~p~~~~ 224 (358)
T d1jkma_ 155 -HHPFPSGVEDCLAAVLWVDEHRESLGLSGVVVQGESGGGNLAIATTLLAKRRGRLDAIDGVYASIPYISG 224 (358)
T ss_dssp -ECCTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEETHHHHHHHHHHHHHHHTTCGGGCSEEEEESCCCCC
T ss_pred -cCCCchhhHHHHHHHHHHHHhccccCCccceeecccCchHHHHHHHHHHhhcCCCccccccccccceecc
Confidence 112234589999999999875 23688999999999999999877653 23467888998887654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.52 E-value=2.3e-12 Score=133.34 Aligned_cols=272 Identities=14% Similarity=0.175 Sum_probs=160.0
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
..+|||+.++|... ..+.++++.. ......++.+. ..+...+|||||++||.....+ ..
T Consensus 24 a~~~~g~~l~~~~~----------~~v~i~~~~~-~~~~~~~~~H~-----~~v~~~~~sp~g~~latg~~dg-----~i 82 (311)
T d1nr0a1 24 GNTPAGDKIQYCNG----------TSVYTVPVGS-LTDTEIYTEHS-----HQTTVAKTSPSGYYCASGDVHG-----NV 82 (311)
T ss_dssp EECTTSSEEEEEET----------TEEEEEETTC-SSCCEEECCCS-----SCEEEEEECTTSSEEEEEETTS-----EE
T ss_pred EEcCCCCEEEEEeC----------CEEEEEECCC-CceeEEEcCCC-----CCEEEEEEeCCCCeEeccccCc-----eE
Confidence 34799999998631 1355555532 22223344433 4688999999999998776543 45
Q ss_pred EEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceee
Q 003886 183 ELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (789)
Q Consensus 183 ~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (789)
.+|+ .++......+. ...+.| ..+.|+|||+.|+..+...
T Consensus 83 ~iwd~~~~~~~~~~~~~-~~~~~v------~~v~~s~d~~~l~~~~~~~------------------------------- 124 (311)
T d1nr0a1 83 RIWDTTQTTHILKTTIP-VFSGPV------KDISWDSESKRIAAVGEGR------------------------------- 124 (311)
T ss_dssp EEEESSSTTCCEEEEEE-CSSSCE------EEEEECTTSCEEEEEECCS-------------------------------
T ss_pred eeeeeeccccccccccc-cccCcc------ccccccccccccccccccc-------------------------------
Confidence 6662 22222222221 112223 7899999999998875432
Q ss_pred CCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEE
Q 003886 261 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (789)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (789)
...+.+|+.++++..... ......+..++|+|||+. ++.++. .+..|+++
T Consensus 125 -----------~~~~~v~~~~~~~~~~~l-~~h~~~v~~v~~~~~~~~----~l~sgs--------------~d~~i~i~ 174 (311)
T d1nr0a1 125 -----------ERFGHVFLFDTGTSNGNL-TGQARAMNSVDFKPSRPF----RIISGS--------------DDNTVAIF 174 (311)
T ss_dssp -----------SCSEEEEETTTCCBCBCC-CCCSSCEEEEEECSSSSC----EEEEEE--------------TTSCEEEE
T ss_pred -----------cccccccccccccccccc-ccccccccccccccccee----eecccc--------------cccccccc
Confidence 234667888877654331 222335678899999997 665552 22368888
Q ss_pred ecccccchhhhhhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCc
Q 003886 341 RVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSS 419 (789)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~ 419 (789)
|+ .+++ ...+..+...+....|+|||+.|+..+.+. .+.+||+.++.....
T Consensus 175 d~-----------------~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~-----------~v~~~d~~~~~~~~~ 226 (311)
T d1nr0a1 175 EG-----------------PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG-----------TIVLYNGVDGTKTGV 226 (311)
T ss_dssp ET-----------------TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS-----------CEEEEETTTCCEEEE
T ss_pred cc-----------------cccccccccccccccccccccCccccccccccccc-----------ccccccccccccccc
Confidence 87 3333 345555566788899999999988776543 488899876543211
Q ss_pred ccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC--CceeEEeee
Q 003886 420 LEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES--NFSWSLLTL 497 (789)
Q Consensus 420 t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~--~~~~~~~s~ 497 (789)
. .... ....| +...+..+.|+|||+.|+ ++..++. |..+|+.++++.+...... ......+.+
T Consensus 227 ~----------~~~~-~~~~~-h~~~V~~~~~s~~~~~l~-tgs~Dg~--v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~ 291 (311)
T d1nr0a1 227 F----------EDDS-LKNVA-HSGSVFGLTWSPDGTKIA-SASADKT--IKIWNVATLKVEKTIPVGTRIEDQQLGIIW 291 (311)
T ss_dssp C----------BCTT-SSSCS-SSSCEEEEEECTTSSEEE-EEETTSE--EEEEETTTTEEEEEEECCSSGGGCEEEEEE
T ss_pred c----------cccc-ccccc-ccccccccccCCCCCEEE-EEeCCCe--EEEEECCCCcEEEEEECCCCccceEEEEEe
Confidence 0 0000 00000 112345678999999664 5555554 5556888888765433322 122234555
Q ss_pred cCCEEEEEE
Q 003886 498 DGDNIIAVS 506 (789)
Q Consensus 498 dg~~l~~~~ 506 (789)
+++.++...
T Consensus 292 ~~~~l~s~s 300 (311)
T d1nr0a1 292 TKQALVSIS 300 (311)
T ss_dssp CSSCEEEEE
T ss_pred cCCEEEEEE
Confidence 666554433
|
| >d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Heroin esterase species: Rhodococcus sp. [TaxId: 1831]
Probab=99.52 E-value=3.6e-14 Score=147.68 Aligned_cols=112 Identities=21% Similarity=0.242 Sum_probs=84.3
Q ss_pred eeecCCCe-eEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc-hhhHHHHHHHH-HCCcEEEEEcCCCCCCCCchhhccC
Q 003886 567 NLTKGAQK-PFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLS-SVGYSLLIVNYRGSLGFGEEALQSL 643 (789)
Q Consensus 567 ~~~~~~g~-~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~~~~~~la-~~Gy~V~~~d~rGs~G~G~~~~~~~ 643 (789)
.+...+|. .+.+++|.|++ ..++.|+||++|||++.... ..+......++ +.||.|+.+|||..++..
T Consensus 54 ~~~~~~g~~~i~~~~~~P~~--~~~~~Pvvv~iHGGG~~~g~~~~~~~~~~~la~~~G~~V~~vdYrl~pe~~------- 124 (317)
T d1lzla_ 54 SAPGLDGDPEVKIRFVTPDN--TAGPVPVLLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRLAPETT------- 124 (317)
T ss_dssp EECCSTTCCCEEEEEEEESS--CCSCEEEEEEECCSTTTSCCGGGGHHHHHHHHHHHCCEEEEECCCCTTTSC-------
T ss_pred EEecCCCCceEEEEEECCCC--CCCCCcEEEEecCcccccccccccchHHHhHHhhcCCcccccccccccccc-------
Confidence 44455664 69999999974 35678999999999764333 34445555665 569999999999855421
Q ss_pred CCCCCcccHHHHHHHHHHHHHc---CCCCCccEEEEEcCccHHHHHHHHHh
Q 003886 644 PGKVGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ 691 (789)
Q Consensus 644 ~~~~~~~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~~~~ 691 (789)
....++|+.++++++.++ ..+|++||+|+|+|+||++++.++.+
T Consensus 125 ----~~~~~~d~~~~~~~~~~~~~~~g~D~~rI~l~G~SaGg~la~~~~~~ 171 (317)
T d1lzla_ 125 ----FPGPVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGTVLK 171 (317)
T ss_dssp ----TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHH
T ss_pred ----ccccccccccchhHHHHHHHHhCCCHHHEEEEEeccccHHHHHHHhh
Confidence 233478999999998764 23899999999999999999988865
|
| >d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2) {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Salicylic acid-binding protein 2 (SABP2) species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.52 E-value=8.2e-14 Score=138.28 Aligned_cols=104 Identities=20% Similarity=0.237 Sum_probs=77.9
Q ss_pred cEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCcc
Q 003886 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (789)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (789)
|.||++||.+++ ...|......|+++||.|+++|+|| +|.+.... -.....++....+..++... ....+
T Consensus 3 ~~vvllHG~~~~--~~~w~~~~~~L~~~g~~vi~~Dl~G---~G~S~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~ 72 (258)
T d1xkla_ 3 KHFVLVHGACHG--GWSWYKLKPLLEAAGHKVTALDLAA---SGTDLRKI----EELRTLYDYTLPLMELMESL-SADEK 72 (258)
T ss_dssp CEEEEECCTTCC--GGGGTTHHHHHHHTTCEEEECCCTT---STTCCCCG----GGCCSHHHHHHHHHHHHHTS-CSSSC
T ss_pred CcEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEecCCC---CCCCCCCC----CCCcchHHHHHHHhhhhhcc-ccccc
Confidence 678899997764 5678888899999999999999998 55543211 11223555555555555442 23467
Q ss_pred EEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 673 VTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 673 v~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
+.++|||+||.+++.++.++|++++.+|+.++..
T Consensus 73 ~~lvghS~Gg~va~~~a~~~p~~~~~lil~~~~~ 106 (258)
T d1xkla_ 73 VILVGHSLGGMNLGLAMEKYPQKIYAAVFLAAFM 106 (258)
T ss_dssp EEEEEETTHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred ccccccchhHHHHHHHhhhhccccceEEEecccC
Confidence 9999999999999999999999999999988753
|
| >d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas campestris, pv. citri [TaxId: 339]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline iminopeptidase species: Xanthomonas campestris, pv. citri [TaxId: 339]
Probab=99.51 E-value=1.2e-13 Score=143.31 Aligned_cols=123 Identities=18% Similarity=0.274 Sum_probs=88.4
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
++..||.+++...+-.+ +.|.||++||++++.. .|... ..+.+.||.|+++|.|| +|.+.... ..
T Consensus 16 i~~~dg~~i~y~~~G~~------~g~pvvllHG~~g~~~--~~~~~-~~~l~~~~~Vi~~D~rG---~G~S~~~~---~~ 80 (313)
T d1azwa_ 16 LKVDDRHTLYFEQCGNP------HGKPVVMLHGGPGGGC--NDKMR-RFHDPAKYRIVLFDQRG---SGRSTPHA---DL 80 (313)
T ss_dssp EECSSSCEEEEEEEECT------TSEEEEEECSTTTTCC--CGGGG-GGSCTTTEEEEEECCTT---STTSBSTT---CC
T ss_pred EEeCCCcEEEEEEecCC------CCCEEEEECCCCCCcc--chHHH-hHHhhcCCEEEEEeccc---cCCCCccc---cc
Confidence 34567888876655322 3466888999887532 33322 23346799999999998 66664321 22
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
....+.++.+.+..++++ ++.+++.|+|||+||.+++.++.++|++++++|+.++...
T Consensus 81 ~~~~~~~~~~dl~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lv~~~~~~~ 138 (313)
T d1azwa_ 81 VDNTTWDLVADIERLRTH--LGVDRWQVFGGSWGSTLALAYAQTHPQQVTELVLRGIFLL 138 (313)
T ss_dssp TTCCHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCCC
T ss_pred cchhHHHHHHHHHHHHHh--hccccceeEEecCCcHHHHHHHHHhhhceeeeeEeccccc
Confidence 234466777777777776 4567899999999999999999999999999999887543
|
| >d1uxoa_ c.69.1.31 (A:) Hypothetical protein YdeN {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: YdeN-like domain: Hypothetical protein YdeN species: Bacillus subtilis [TaxId: 1423]
Probab=99.51 E-value=2.2e-14 Score=136.69 Aligned_cols=149 Identities=14% Similarity=0.094 Sum_probs=97.5
Q ss_pred cEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCcc
Q 003886 593 PLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSK 672 (789)
Q Consensus 593 P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~r 672 (789)
..||++||..++.....+....+.|+++||.|+++|++|. |. ...+|..+.++.+.+ ...++
T Consensus 2 k~V~~vHG~~~~~~~~~~~~l~~~L~~~G~~v~~~d~p~~---~~------------~~~~~~~~~l~~~~~---~~~~~ 63 (186)
T d1uxoa_ 2 KQVYIIHGYRASSTNHWFPWLKKRLLADGVQADILNMPNP---LQ------------PRLEDWLDTLSLYQH---TLHEN 63 (186)
T ss_dssp CEEEEECCTTCCTTSTTHHHHHHHHHHTTCEEEEECCSCT---TS------------CCHHHHHHHHHTTGG---GCCTT
T ss_pred CEEEEECCCCCCcchhHHHHHHHHHHhCCCEEEEeccCCC---Cc------------chHHHHHHHHHHHHh---ccCCC
Confidence 3589999977654333355677899999999999999873 22 125555555554443 34688
Q ss_pred EEEEEcCccHHHHHHHHHhCCCce--eEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcC
Q 003886 673 VTVVGGSHGGFLTTHLIGQAPDKF--VAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKS 750 (789)
Q Consensus 673 v~l~G~S~GG~~a~~~~~~~p~~~--~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 750 (789)
++|+|||+||++++.++.+++... .++++.++..... ..+..... +.....
T Consensus 64 ~~lvGhS~Gg~~a~~~a~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~--------~~~~~~----------- 116 (186)
T d1uxoa_ 64 TYLVAHSLGCPAILRFLEHLQLRAALGGIILVSGFAKSL--------PTLQMLDE--------FTQGSF----------- 116 (186)
T ss_dssp EEEEEETTHHHHHHHHHHTCCCSSCEEEEEEETCCSSCC--------TTCGGGGG--------GTCSCC-----------
T ss_pred cEEEEechhhHHHHHHHHhCCccceeeEEeecccccccc--------hhhhhhhh--------hhcccc-----------
Confidence 999999999999999999988644 4444444432211 01110000 000010
Q ss_pred ccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 751 PISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 751 p~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
+.....++.+|+|++||++|++||++++.++++.+.
T Consensus 117 ~~~~~~~~~~p~lvi~g~~D~~vp~~~~~~l~~~~~ 152 (186)
T d1uxoa_ 117 DHQKIIESAKHRAVIASKDDQIVPFSFSKDLAQQID 152 (186)
T ss_dssp CHHHHHHHEEEEEEEEETTCSSSCHHHHHHHHHHTT
T ss_pred cccccccCCCCEEEEecCCCCCCCHHHHHHHHHHcC
Confidence 001112346799999999999999999999999874
|
| >d2i3da1 c.69.1.36 (A:2-219) Hypothetical protein Atu1826 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Atu1826-like domain: Hypothetical protein Atu1826 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.51 E-value=6e-13 Score=129.93 Aligned_cols=166 Identities=17% Similarity=0.252 Sum_probs=120.9
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCC---CCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCC
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPH---SVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLP 644 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~---~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~ 644 (789)
+...+| +|++++..| +....|++|++||.|. ++...........|+++||.|+.+||||.+.... .
T Consensus 5 i~g~~G-~Le~~~~~~----~~~~~~~~l~~Hp~p~~GG~~~~~~~~~~a~~l~~~G~~~lrfn~RG~g~S~G------~ 73 (218)
T d2i3da1 5 FNGPAG-RLEGRYQPS----KEKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQG------E 73 (218)
T ss_dssp EEETTE-EEEEEEECC----SSTTCCEEEEECCCGGGTCCTTSHHHHHHHHHHHHTTCEEEEECCTTSTTCCS------C
T ss_pred EeCCCc-cEEEEEeCC----CCCCCCEEEEECCCcCcCCcCCcHHHHHHHHHHHhcCeeEEEEecCccCCCcc------c
Confidence 344456 799987654 3456799999998542 2222333445678999999999999998433222 2
Q ss_pred CCCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhh
Q 003886 645 GKVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 724 (789)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~ 724 (789)
...+..+.+|..++++|+..+.. +..++.++|+|+||.+++.++.+.+ ...++++.+|.....
T Consensus 74 ~~~~~~e~~d~~aa~~~~~~~~~-~~~~~~~~g~S~G~~~a~~~a~~~~-~~~~~~~~~~~~~~~--------------- 136 (218)
T d2i3da1 74 FDHGAGELSDAASALDWVQSLHP-DSKSCWVAGYSFGAWIGMQLLMRRP-EIEGFMSIAPQPNTY--------------- 136 (218)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHCT-TCCCEEEEEETHHHHHHHHHHHHCT-TEEEEEEESCCTTTS---------------
T ss_pred cccchhHHHHHHHHHhhhhcccc-cccceeEEeeehHHHHHHHHHHhhc-cccceeecccccccc---------------
Confidence 24566678999999999998863 3457899999999999999998765 566777766653210
Q ss_pred hccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 725 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
....+....+|+|++||++|..++..+..++++.++.
T Consensus 137 --------------------------~~~~~~~~~~p~l~i~g~~D~~~~~~~~~~l~~~~~~ 173 (218)
T d2i3da1 137 --------------------------DFSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKLKT 173 (218)
T ss_dssp --------------------------CCTTCTTCCSCEEEEEETTCSSSCHHHHHHHHHHHTT
T ss_pred --------------------------chhhccccCCCceeeecccceecChHHHHHHHHHHhh
Confidence 0122345678999999999999999999999988753
|
| >d1j1ia_ c.69.1.10 (A:) Meta cleavage compound hydrolase CarC {Janthinobacterium sp. J3 [TaxId: 213804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carbon-carbon bond hydrolase domain: Meta cleavage compound hydrolase CarC species: Janthinobacterium sp. J3 [TaxId: 213804]
Probab=99.50 E-value=1.7e-13 Score=137.90 Aligned_cols=200 Identities=17% Similarity=0.186 Sum_probs=115.5
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc-hhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
+.||.+++... . + +.|.||++||.+..... ..|......| ++||.|+++|+|| +|.+.... .
T Consensus 8 ~~dg~~l~y~~---~----G-~g~~vvllHG~~~~~~~~~~~~~~~~~l-~~~~~v~~~D~~G---~G~S~~~~-----~ 70 (268)
T d1j1ia_ 8 NAGGVETRYLE---A----G-KGQPVILIHGGGAGAESEGNWRNVIPIL-ARHYRVIAMDMLG---FGKTAKPD-----I 70 (268)
T ss_dssp EETTEEEEEEE---E----C-CSSEEEEECCCSTTCCHHHHHTTTHHHH-TTTSEEEEECCTT---STTSCCCS-----S
T ss_pred EECCEEEEEEE---E----c-CCCeEEEECCCCCCccHHHHHHHHHHHH-hcCCEEEEEcccc---cccccCCc-----c
Confidence 44788887432 2 1 23568899997654322 2344455566 5689999999998 55543211 1
Q ss_pred cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhc------CCCCCcchh
Q 003886 649 SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVG------TTDIPDWCY 722 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~------~~~~~~~~~ 722 (789)
....++....+..+++.-.+ ..++.++|||+||.+++.++.++|++++++|+.+|......... .........
T Consensus 71 ~~~~~~~~~~~~~~i~~l~~-~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (268)
T d1j1ia_ 71 EYTQDRRIRHLHDFIKAMNF-DGKVSIVGNSMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDLRPIINYDFTREGM 149 (268)
T ss_dssp CCCHHHHHHHHHHHHHHSCC-SSCEEEEEEHHHHHHHHHHHHHCGGGEEEEEEESCCBCCCC----------CCSCHHHH
T ss_pred ccccccccccchhhHHHhhh-cccceeeeccccccccchhhccChHhhheeeecCCCccccccchhhhhhhhhhhhhhhh
Confidence 22355555555555554212 25789999999999999999999999999999887532111100 000000000
Q ss_pred hhhccCccccccCCCC-----------Ch-------hhHHHHHh----cCccccCCCCCCCEEEEEeCCCCCCChHHHHH
Q 003886 723 VESYGSKGKDSFTESP-----------SV-------EDLTRFHS----KSPISHISKVKTPTIFLLGAQDLRVPVSNGLQ 780 (789)
Q Consensus 723 ~~~~~~~~~~~~~~~~-----------~~-------~~~~~~~~----~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~ 780 (789)
...........+.... .. .....+.. ......+.++++|+|+++|++|..+|++.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~l~i~G~~D~~~~~~~~~~ 229 (268)
T d1j1ia_ 150 VHLVKALTNDGFKIDDAMINSRYTYATDEATRKAYVATMQWIREQGGLFYDPEFIRKVQVPTLVVQGKDDKVVPVETAYK 229 (268)
T ss_dssp HHHHHHHSCTTCCCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHTSSBCCHHHHTTCCSCEEEEEETTCSSSCHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhHHHHHhhhhhhhhhhhhhhhhhhhccccccchhhhHhhCCCCEEEEEeCCCCCCCHHHHHH
Confidence 0000000000000000 00 00000111 11123467899999999999999999999999
Q ss_pred HHHHCCC
Q 003886 781 VIYHIPF 787 (789)
Q Consensus 781 l~~~l~~ 787 (789)
+.+.+++
T Consensus 230 ~~~~~~~ 236 (268)
T d1j1ia_ 230 FLDLIDD 236 (268)
T ss_dssp HHHHCTT
T ss_pred HHHhCCC
Confidence 9998875
|
| >d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Arylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.50 E-value=1.4e-13 Score=138.37 Aligned_cols=120 Identities=18% Similarity=0.214 Sum_probs=86.3
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
+|...||.+|+...+ + ..|.||++||++.+ ...|......|+++||.|+++|+|| +|.+...
T Consensus 2 ~f~~~dG~~l~y~~~-------G-~g~~vv~lHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~~----- 63 (271)
T d1va4a_ 2 TFVAKDGTQIYFKDW-------G-SGKPVLFSHGWLLD--ADMWEYQMEYLSSRGYRTIAFDRRG---FGRSDQP----- 63 (271)
T ss_dssp EEECTTSCEEEEEEE-------S-SSSEEEEECCTTCC--GGGGHHHHHHHHTTTCEEEEECCTT---STTSCCC-----
T ss_pred EEEeECCeEEEEEEE-------c-CCCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeccc---ccccccc-----
Confidence 355678988864332 1 23567899997764 5678788889999999999999998 5554321
Q ss_pred CCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHH-HHHHhCCCceeEEEEeCCcc
Q 003886 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTT-HLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~-~~~~~~p~~~~a~v~~~pv~ 706 (789)
......+++...+..+.+. ++.+++.++|||+||.+++ .++.++|++++++++.++..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~vg~s~gG~~~~~~~a~~~p~~v~~~v~~~~~~ 122 (271)
T d1va4a_ 64 WTGNDYDTFADDIAQLIEH--LDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVT 122 (271)
T ss_dssp SSCCSHHHHHHHHHHHHHH--HTCCSEEEEEETTHHHHHHHHHHHHCSTTEEEEEEESCCC
T ss_pred ccccccccccccceeeeee--cCCCcceeeccccccccccccccccccceeeEEEeecccc
Confidence 1233466666666666665 4567899999999887665 45667899999999988754
|
| >d3c70a1 c.69.1.20 (A:2-257) Hydroxynitrile lyase {Rubber tree (Hevea brasiliensis) [TaxId: 3981]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hydroxynitrile lyase-like domain: Hydroxynitrile lyase species: Rubber tree (Hevea brasiliensis) [TaxId: 3981]
Probab=99.50 E-value=9.9e-14 Score=137.96 Aligned_cols=102 Identities=19% Similarity=0.202 Sum_probs=77.1
Q ss_pred EEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCccEE
Q 003886 595 IVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPSKVT 674 (789)
Q Consensus 595 vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~rv~ 674 (789)
.|++||.+++ ...|......|+++||.|+++|+|| +|.+.... .....+++..+.+..++.+- ...+++.
T Consensus 5 ~vliHG~~~~--~~~w~~~~~~L~~~g~~Via~Dl~G---~G~S~~~~----~~~~~~~~~~~~l~~~~~~~-~~~~~~~ 74 (256)
T d3c70a1 5 FVLIHTICHG--AWIWHKLKPLLEALGHKVTALDLAA---SGVDPRQI----EEIGSFDEYSEPLLTFLEAL-PPGEKVI 74 (256)
T ss_dssp EEEECCTTCC--GGGGTTHHHHHHHTTCEEEEECCTT---STTCSCCG----GGCCSHHHHTHHHHHHHHHS-CTTCCEE
T ss_pred EEEeCCCCCC--HHHHHHHHHHHHhCCCEEEEEcCCC---CCCCCCCC----CCCCCHHHHHHHhhhhhhhh-cccccee
Confidence 4789997764 5678788899999999999999998 56553211 11234556666555554432 2467899
Q ss_pred EEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 675 VVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 675 l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
|+|||+||.+++.++.++|++++++|+.++..
T Consensus 75 lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 106 (256)
T d3c70a1 75 LVGESCGGLNIAIAADKYCEKIAAAVFHNSVL 106 (256)
T ss_dssp EEEETTHHHHHHHHHHHHGGGEEEEEEESCCC
T ss_pred ecccchHHHHHHHHhhcCchhhhhhheecccc
Confidence 99999999999999999999999999988653
|
| >d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Chloroperoxidase F species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.50 E-value=2e-13 Score=137.60 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=85.4
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
+|+..||.+++.... + ..|.||++||.+.+ ...|......|.++||.|+++|+|| +|.+...
T Consensus 2 ~f~~~dG~~i~y~~~-------G-~g~pvvllHG~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G---~G~S~~~----- 63 (273)
T d1a8sa_ 2 TFTTRDGTQIYYKDW-------G-SGQPIVFSHGWPLN--ADSWESQMIFLAAQGYRVIAHDRRG---HGRSSQP----- 63 (273)
T ss_dssp EEECTTSCEEEEEEE-------S-CSSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC-----
T ss_pred EEEeeCCcEEEEEEE-------C-CCCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEechh---cCccccc-----
Confidence 567779988865433 1 23567899997764 5678888889999999999999998 5554321
Q ss_pred CCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHH-HHHhCCCceeEEEEeCCcc
Q 003886 647 VGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTH-LIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~-~~~~~p~~~~a~v~~~pv~ 706 (789)
....+.+++.+.+..+++. ++.++..++|||+||.+++. ++.++|++++++++.++..
T Consensus 64 ~~~~~~~~~~~~~~~~l~~--l~~~~~~lvg~s~gG~~~~~~~a~~~p~~v~~~~l~~~~~ 122 (273)
T d1a8sa_ 64 WSGNDMDTYADDLAQLIEH--LDLRDAVLFGFSTGGGEVARYIGRHGTARVAKAGLISAVP 122 (273)
T ss_dssp SSCCSHHHHHHHHHHHHHH--TTCCSEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCC
T ss_pred cccccccchHHHHHHHHHh--cCccceeeeeeccCCccchhhhhhhhhhccceeEEEeccc
Confidence 1123466666666666655 45567899999998865554 5556799999999887654
|
| >d1jjia_ c.69.1.2 (A:) Carboxylesterase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.50 E-value=1.5e-14 Score=150.10 Aligned_cols=187 Identities=17% Similarity=0.099 Sum_probs=122.8
Q ss_pred ecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCc-hhhHHHHHHH-HHCCcEEEEEcCCCCCCCCchhhccCCCC
Q 003886 569 TKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSL-SSYSKSLAFL-SSVGYSLLIVNYRGSLGFGEEALQSLPGK 646 (789)
Q Consensus 569 ~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~-~~~~~~~~~l-a~~Gy~V~~~d~rGs~G~G~~~~~~~~~~ 646 (789)
...+| .+...+|.|+ ++.|+||++|||++.... ..+...+..+ ++.||.|+.+|||.++++.
T Consensus 62 ~~~~g-~i~~~iy~P~-----~~~P~il~iHGGg~~~g~~~~~~~~~~~l~~~~g~~Vv~v~Yrlap~~~---------- 125 (311)
T d1jjia_ 62 KGRNG-DIRVRVYQQK-----PDSPVLVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRLAPEHK---------- 125 (311)
T ss_dssp EETTE-EEEEEEEESS-----SSEEEEEEECCSTTTSCCTGGGHHHHHHHHHHHTSEEEEEECCCTTTSC----------
T ss_pred eCCCC-cEEEEEEcCC-----CCceEEEEEcCCCCccCChhhhhhhhhhhhhcCCcEEEEeccccccccc----------
Confidence 33344 6888999985 245999999999875433 3444555555 4569999999999876542
Q ss_pred CCcccHHHHHHHHHHHHHc---CCCCCccEEEEEcCccHHHHHHHHHh----CCCceeEEEEeCCccchhhhhcCCCCCc
Q 003886 647 VGSQDVNDVLTAIDHVIDM---GLANPSKVTVVGGSHGGFLTTHLIGQ----APDKFVAAAARNPLCNLALMVGTTDIPD 719 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~---~~~d~~rv~l~G~S~GG~~a~~~~~~----~p~~~~a~v~~~pv~~~~~~~~~~~~~~ 719 (789)
....++|+.++++|+.++ ..+|++||+|+|+|+||++++.++.. ......+.++..|+.+.....
T Consensus 126 -~p~~~~d~~~a~~~~~~~~~~~~~d~~ri~v~G~SaGG~la~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~------- 197 (311)
T d1jjia_ 126 -FPAAVYDCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAVSIMARDSGEDFIKHQILIYPVVNFVAPT------- 197 (311)
T ss_dssp -TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTCCCEEEEEEESCCCCSSSCC-------
T ss_pred -cchhhhhhhhhhhHHHHhHHHhCcChhHEEEEeeecCCcceeechhhhhhccccccceeeeecceeeeccCc-------
Confidence 233478999999999875 35889999999999999998877653 234678889999987753210
Q ss_pred chhhhhccCccccccCCCCChhhH-------------HHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 720 WCYVESYGSKGKDSFTESPSVEDL-------------TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
.. ...+.. ... ....... ......||+....+..+|+||+||+.|.. ..++..++++|+
T Consensus 198 ~~-~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~pP~li~~g~~D~l--~d~~~~~~~~L~ 269 (311)
T d1jjia_ 198 PS-LLEFGE----GLW-ILDQKIMSWFSEQYFSREEDKFNPLASVIFADLENLPPALIITAEYDPL--RDEGEVFGQMLR 269 (311)
T ss_dssp HH-HHHTSS----SCS-SCCHHHHHHHHHHHCSSGGGGGCTTTSGGGSCCTTCCCEEEEEEEECTT--HHHHHHHHHHHH
T ss_pred cc-cccccc----ccc-cccHHHhhhhhhhcccccccccccccchhhcccccCCCEEEEEcCCCCC--hHHHHHHHHHHH
Confidence 00 000000 000 0000000 00112366655545567999999999965 458899999886
Q ss_pred C
Q 003886 787 F 787 (789)
Q Consensus 787 ~ 787 (789)
+
T Consensus 270 ~ 270 (311)
T d1jjia_ 270 R 270 (311)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d2gzsa1 c.69.1.38 (A:41-305) Enterobactin and salmochelin hydrolase IroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: IroE-like domain: Enterobactin and salmochelin hydrolase IroE species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=2e-14 Score=145.41 Aligned_cols=187 Identities=11% Similarity=0.058 Sum_probs=123.7
Q ss_pred eeecCCC-eeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccC--
Q 003886 567 NLTKGAQ-KPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL-- 643 (789)
Q Consensus 567 ~~~~~~g-~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~-- 643 (789)
.+.+.+| .++.+++++|.++++.+++|+|+++||++....... ....+..+.+|+.|+++++++..+++...+...
T Consensus 17 ~~~s~dg~~~~~~~v~~P~~~~~~~~yPvi~~lhG~~~~~~~~~-~~~~~~~~~~~~~vV~v~~~~~~~~~~~~r~~d~~ 95 (265)
T d2gzsa1 17 SFDSVDGTRHYRVWTAVPNTTAPASGYPILYMLDGNAVMDRLDD-ELLKQLSEKTPPVIVAVGYQTNLPFDLNSRAYDYT 95 (265)
T ss_dssp EEECTTSSCEEEEEEEEESSCCCTTCEEEEEESSHHHHHHHCCH-HHHHHHTTSCCCEEEEEEESSSSSCCHHHHHHHTC
T ss_pred EEEcCCCCEEEEEEEEcCCCCCCCCCceEEEEecCcchhhhHHH-HHHHHHHhcCCCeEEEecCCCCCcCcccccccccc
Confidence 4566676 579999999999988999999999999654211111 122344567899999999998777654321110
Q ss_pred ------C-----C----CCCcc-cHH--HHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 644 ------P-----G----KVGSQ-DVN--DVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 644 ------~-----~----~~~~~-~~~--D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
. . ..+.. ... ...+.+.++.++..+|+++++|+|+|+||++++.++.+ ++.|.++++.+|.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~d~~~~~i~G~S~GG~~a~~~~~~-~~~f~~~~a~s~~ 174 (265)
T d2gzsa1 96 PAAESRKTDLHSGRFSRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFVLDSWLS-SSYFRSYYSASPS 174 (265)
T ss_dssp CGGGGTTCSCC-----CCCCCHHHHHHHHHHTHHHHHTTTSCEEEEEEEEEEETHHHHHHHHHHHH-CSSCSEEEEESGG
T ss_pred cccCcccccccccchhccccchHHHHHHHHHHHHHHHHHhcCCCcCceEEEeccHHHHHHHHHHHc-CcccCEEEEECCc
Confidence 0 0 01110 111 12234555555666899999999999999999998876 5678888888886
Q ss_pred cchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCC--------CCCCChHH
Q 003886 706 CNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQ--------DLRVPVSN 777 (789)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~--------D~~vp~~~ 777 (789)
..+ .....+...++.........|+++.+|+. |.++++.+
T Consensus 175 ~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~ 222 (265)
T d2gzsa1 175 LGR--------------------------------GYDALLSRVTAVEPLQFCTKHLAIMEGSATQGDNRETHAVGVLSK 222 (265)
T ss_dssp GST--------------------------------THHHHHHHHHTSCTTTTTTCEEEEEECCC-----------CHHHH
T ss_pred ccc--------------------------------cchhhhhccccccccccCCCcEEEEcCCcccccccccccchhHHH
Confidence 532 11122233344445566677888888866 77889999
Q ss_pred HHHHHHHCCC
Q 003886 778 GLQVIYHIPF 787 (789)
Q Consensus 778 ~~~l~~~l~~ 787 (789)
+.+++++|++
T Consensus 223 ~~~l~~~L~~ 232 (265)
T d2gzsa1 223 IHTTLTILKD 232 (265)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998864
|
| >d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Biotin biosynthesis protein BioH domain: Biotin biosynthesis protein BioH species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=3.9e-14 Score=141.96 Aligned_cols=179 Identities=19% Similarity=0.210 Sum_probs=107.7
Q ss_pred CCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCC
Q 003886 591 CDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANP 670 (789)
Q Consensus 591 ~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~ 670 (789)
..|.||++||.+.+ ...|......|+ .||.|+++|+|| +|.+. .....++.|+.+.+.. . ..
T Consensus 10 g~~~lvllHG~~~~--~~~~~~~~~~L~-~~~~vi~~D~~G---~G~S~------~~~~~~~~d~~~~~~~---~---~~ 71 (256)
T d1m33a_ 10 GNVHLVLLHGWGLN--AEVWRCIDEELS-SHFTLHLVDLPG---FGRSR------GFGALSLADMAEAVLQ---Q---AP 71 (256)
T ss_dssp CSSEEEEECCTTCC--GGGGGGTHHHHH-TTSEEEEECCTT---STTCC------SCCCCCHHHHHHHHHT---T---SC
T ss_pred CCCeEEEECCCCCC--HHHHHHHHHHHh-CCCEEEEEeCCC---CCCcc------cccccccccccccccc---c---cc
Confidence 44678889997664 556777777785 679999999998 55543 1233445565544332 2 34
Q ss_pred ccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcch---hhhhcc---Cccc-----cccCCC--
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWC---YVESYG---SKGK-----DSFTES-- 737 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~---~~~~~~---~~~~-----~~~~~~-- 737 (789)
+++.++|||+||.+++.++.++|++++++++.++................. +...+. .... ......
T Consensus 72 ~~~~l~GhS~Gg~ia~~~a~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (256)
T d1m33a_ 72 DKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDQQRTVERFLALQTMGTET 151 (256)
T ss_dssp SSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCSCCBCBTTBCSBCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTT
T ss_pred cceeeeecccchHHHHHHHHhCCcccceeeeeecccccccchhhhhhHHHHHHHHHhhhhhhhHHHHHHHhhhhhccccc
Confidence 689999999999999999999999999998887543211100000000000 000000 0000 000000
Q ss_pred -----------------CChh----hHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 738 -----------------PSVE----DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 738 -----------------~~~~----~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.... ....+...+....++++++|+|+++|++|..+|++.+..+.+.+++
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~p~~~~~~l~~~~~~ 222 (256)
T d1m33a_ 152 ARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWPH 222 (256)
T ss_dssp HHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHCCCTTGGGGCCSCEEEEEETTCSSSCGGGCC-CTTTCTT
T ss_pred hhhHHHHHHHhhhhcchhhHHHHHhhhhhhcccchHHHHHhccCCccccccccCCCCCHHHHHHHHHHCCC
Confidence 0001 1122223344456778999999999999999999988888776654
|
| >d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Mll8374 species: Mesorhizobium loti [TaxId: 381]
Probab=99.48 E-value=5.4e-14 Score=136.70 Aligned_cols=154 Identities=15% Similarity=0.112 Sum_probs=104.6
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccC-CCCCC----cccHHHHHHHHHHH
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSL-PGKVG----SQDVNDVLTAIDHV 662 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~-~~~~~----~~~~~D~~~~i~~l 662 (789)
..+++|+||++||.++. ...|......|+. ++.+++++.+.....+..+.... .+... ..+.+++.+.|+.+
T Consensus 19 ~~~~~p~vv~lHG~g~~--~~~~~~l~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 95 (209)
T d3b5ea1 19 GKESRECLFLLHGSGVD--ETTLVPLARRIAP-TATLVAARGRIPQEDGFRWFERIDPTRFEQKSILAETAAFAAFTNEA 95 (209)
T ss_dssp TSSCCCEEEEECCTTBC--TTTTHHHHHHHCT-TSEEEEECCSEEETTEEESSCEEETTEECHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCC--HHHHHHHHHHhcc-CcEEEeeccCcCcccCccccccCCccccchhhHHHHHHHHHHHHHHH
Confidence 45678999999997654 4456666666654 68999998753211111111100 01100 11245566677777
Q ss_pred HHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhh
Q 003886 663 IDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 742 (789)
Q Consensus 663 ~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (789)
.++..+|.+||+|+|+|+||++++.++.++|++|+++|+.+|.....
T Consensus 96 ~~~~~id~~ri~l~G~S~Gg~~a~~~a~~~p~~~~~~v~~~g~~~~~--------------------------------- 142 (209)
T d3b5ea1 96 AKRHGLNLDHATFLGYSNGANLVSSLMLLHPGIVRLAALLRPMPVLD--------------------------------- 142 (209)
T ss_dssp HHHHTCCGGGEEEEEETHHHHHHHHHHHHSTTSCSEEEEESCCCCCS---------------------------------
T ss_pred HHHhCcccCCEEEEeeCChHHHHHHHHHhCCCcceEEEEeCCccccc---------------------------------
Confidence 77766899999999999999999999999999999999998854210
Q ss_pred HHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 743 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 743 ~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
+.......++|++++||++|+++| ..+.++.+.|+
T Consensus 143 --------~~~~~~~~~~p~~~~~G~~D~~~~-~~~~~~~~~l~ 177 (209)
T d3b5ea1 143 --------HVPATDLAGIRTLIIAGAADETYG-PFVPALVTLLS 177 (209)
T ss_dssp --------SCCCCCCTTCEEEEEEETTCTTTG-GGHHHHHHHHH
T ss_pred --------cccccccccchheeeeccCCCccC-HHHHHHHHHHH
Confidence 001122346799999999999998 55667777664
|
| >d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Acyl protein thioesterase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=9.4e-14 Score=137.00 Aligned_cols=161 Identities=14% Similarity=0.096 Sum_probs=101.6
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCC-----CC-CCchhhccCCCCC-Cccc---HHHHHH
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGS-----LG-FGEEALQSLPGKV-GSQD---VNDVLT 657 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs-----~G-~G~~~~~~~~~~~-~~~~---~~D~~~ 657 (789)
..+..++||++||.+.+ ...|......+...++.+++++-+.. .+ .+..+........ ...+ +++..+
T Consensus 17 ~~~~~~~VI~lHG~G~~--~~~~~~~~~~l~~~~~~~v~p~Ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~i~~~~~ 94 (229)
T d1fj2a_ 17 ARKATAAVIFLHGLGDT--GHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSWFDIIGLSPDSQEDESGIKQAAE 94 (229)
T ss_dssp SSCCSEEEEEECCSSSC--HHHHHHHHHTTCCTTEEEEECCCCEEEEGGGTTEEEECSSCBCCCSTTCCBCHHHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCC--HHHHHHHHHHhcCCCCEEEeCCCCCCccccCCCcccccccccccccccchhhhHHHHHHHH
Confidence 34556899999996553 45565555666678899999874310 00 1111111110011 1112 233333
Q ss_pred HHHHHHH---cCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCcccccc
Q 003886 658 AIDHVID---MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSF 734 (789)
Q Consensus 658 ~i~~l~~---~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 734 (789)
.++.+++ +..+|.+||+|+|+|+||.+|+.++.++|++|+++|+.++........ ..
T Consensus 95 ~l~~li~~~~~~~i~~~ri~l~GfS~Gg~~a~~~~~~~~~~~~gvi~~sg~lp~~~~~--------------~~------ 154 (229)
T d1fj2a_ 95 NIKALIDQEVKNGIPSNRIILGGFSQGGALSLYTALTTQQKLAGVTALSCWLPLRASF--------------PQ------ 154 (229)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHTTCSSCCSEEEEESCCCTTGGGS--------------CS------
T ss_pred HHHHHhhhhhhcCCCccceeeeecccchHHHHHHHHhhccccCccccccccccccccc--------------cc------
Confidence 3333332 124899999999999999999999999999999999988753211100 00
Q ss_pred CCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCC
Q 003886 735 TESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIP 786 (789)
Q Consensus 735 ~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~ 786 (789)
. .....+.++|+|++||++|.+||++.++++++.|+
T Consensus 155 ---------------~-~~~~~~~~~Pvli~hG~~D~~vp~~~~~~~~~~L~ 190 (229)
T d1fj2a_ 155 ---------------G-PIGGANRDISILQCHGDCDPLVPLMFGSLTVEKLK 190 (229)
T ss_dssp ---------------S-CCCSTTTTCCEEEEEETTCSSSCHHHHHHHHHHHH
T ss_pred ---------------c-ccccccccCceeEEEcCCCCeeCHHHHHHHHHHHH
Confidence 0 01112346799999999999999999999988875
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=2.4e-11 Score=126.85 Aligned_cols=264 Identities=11% Similarity=0.056 Sum_probs=158.2
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (789)
.||||++|+-- + .+.|.++++....... .+.........+.+...+|||||++|+.....+ .+.
T Consensus 59 fs~~g~~latg-~---------dg~V~iWd~~~~~~~~-~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg-----~i~ 122 (337)
T d1gxra_ 59 ISNPTRHVYTG-G---------KGCVKVWDISHPGNKS-PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS-----TLS 122 (337)
T ss_dssp ECSSSSEEEEE-C---------BSEEEEEETTSTTCCS-CSEEEECSCTTSBEEEEEECTTSSEEEEEESSS-----EEE
T ss_pred ECCCCCEEEEE-E---------CCEEEEEEccCCcccc-eeEEeeecCCCCcEEEEEEcCCCCEEEEeeccc-----ccc
Confidence 36899887532 1 2246667764432211 111100000013478899999999998876653 466
Q ss_pred Eec-C-CceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeC
Q 003886 184 LWS-Q-SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEE 261 (789)
Q Consensus 184 i~~-~-~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (789)
+|+ . ............ ... ...+.|+||+..++....+
T Consensus 123 iwd~~~~~~~~~~~~~~~-~~~------v~~~~~~~~~~~l~s~~~d--------------------------------- 162 (337)
T d1gxra_ 123 IWDLAAPTPRIKAELTSS-APA------CYALAISPDSKVCFSCCSD--------------------------------- 162 (337)
T ss_dssp EEECCCC--EEEEEEECS-SSC------EEEEEECTTSSEEEEEETT---------------------------------
T ss_pred cccccccccccccccccc-ccc------ccccccccccccccccccc---------------------------------
Confidence 663 2 222222222111 111 2578899999988765332
Q ss_pred CcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEe
Q 003886 262 DWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVR 341 (789)
Q Consensus 262 d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d 341 (789)
..|.++++.+++..... ......+..++|+|+++. ++..+ .+..+.++|
T Consensus 163 -----------~~i~~~~~~~~~~~~~~-~~~~~~v~~l~~s~~~~~----~~~~~---------------~d~~v~i~d 211 (337)
T d1gxra_ 163 -----------GNIAVWDLHNQTLVRQF-QGHTDGASCIDISNDGTK----LWTGG---------------LDNTVRSWD 211 (337)
T ss_dssp -----------SCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSEEEEEE
T ss_pred -----------ccccccccccccccccc-cccccccccccccccccc----ccccc---------------ccccccccc
Confidence 46888999888766552 223345678899999997 77665 223678888
Q ss_pred cccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCccc
Q 003886 342 VSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLE 421 (789)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~ 421 (789)
+ .+++..........+...+|+|+|+.|+..+.+. .+.+||+.++.......
T Consensus 212 ~-----------------~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~-----------~i~i~d~~~~~~~~~~~ 263 (337)
T d1gxra_ 212 L-----------------REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESS-----------NVEVLHVNKPDKYQLHL 263 (337)
T ss_dssp T-----------------TTTEEEEEEECSSCEEEEEECTTSSEEEEEETTS-----------CEEEEETTSSCEEEECC
T ss_pred c-----------------ccceeecccccccceEEEEEcccccccceecccc-----------ccccccccccccccccc
Confidence 7 4444333333455677889999999988766442 58899987654321110
Q ss_pred ceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCE
Q 003886 422 KIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDN 501 (789)
Q Consensus 422 ~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~ 501 (789)
....+..+.|+|||+.| +++..++. |..+|+.+++..........+....|+++++.
T Consensus 264 --------------------~~~~i~~v~~s~~g~~l-~s~s~Dg~--i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~ 320 (337)
T d1gxra_ 264 --------------------HESCVLSLKFAYCGKWF-VSTGKDNL--LNAWRTPYGASIFQSKESSSVLSCDISVDDKY 320 (337)
T ss_dssp --------------------CSSCEEEEEECTTSSEE-EEEETTSE--EEEEETTTCCEEEEEECSSCEEEEEECTTSCE
T ss_pred --------------------cccccceEEECCCCCEE-EEEeCCCe--EEEEECCCCCEEEEccCCCCEEEEEEeCCCCE
Confidence 01123466899999965 45555554 55558888887665554444555678888887
Q ss_pred EEEE
Q 003886 502 IIAV 505 (789)
Q Consensus 502 l~~~ 505 (789)
|+..
T Consensus 321 l~t~ 324 (337)
T d1gxra_ 321 IVTG 324 (337)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6543
|
| >d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Bromoperoxidase A2 species: Streptomyces aureofaciens [TaxId: 1894]
Probab=99.46 E-value=3.1e-13 Score=136.55 Aligned_cols=103 Identities=21% Similarity=0.324 Sum_probs=75.7
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.|.||++||.+.+ ...|......|+++||.|+++|+|| +|.+... .....++++.+.+..++++ ++.+
T Consensus 23 G~~ivllHG~~~~--~~~~~~~~~~l~~~g~~vi~~D~~G---~G~S~~~-----~~~~~~~~~~~dl~~~l~~--l~~~ 90 (277)
T d1brta_ 23 GQPVVLIHGFPLS--GHSWERQSAALLDAGYRVITYDRRG---FGQSSQP-----TTGYDYDTFAADLNTVLET--LDLQ 90 (277)
T ss_dssp SSEEEEECCTTCC--GGGGHHHHHHHHHTTCEEEEECCTT---STTSCCC-----SSCCSHHHHHHHHHHHHHH--HTCC
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHHhCCCEEEEEeCCC---CCccccc-----ccccchhhhhhhhhhhhhc--cCcc
Confidence 4678899997764 5677777888999999999999998 5554321 1123455555555555554 3457
Q ss_pred cEEEEEcCccH-HHHHHHHHhCCCceeEEEEeCCcc
Q 003886 672 KVTVVGGSHGG-FLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 672 rv~l~G~S~GG-~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
++.++|||+|| .++..++.++|++++++|+.+++.
T Consensus 91 ~~~lvGhS~G~~~~~~~~a~~~p~~v~~lvl~~~~~ 126 (277)
T d1brta_ 91 DAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLE 126 (277)
T ss_dssp SEEEEEEGGGHHHHHHHHHHHCSTTEEEEEEESCCC
T ss_pred cccccccccchhhhhHHHHHhhhcccceEEEecCCC
Confidence 89999999996 455666777899999999988754
|
| >d1ehya_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Agrobacterium radiobacter [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Agrobacterium radiobacter [TaxId: 358]
Probab=99.45 E-value=3.2e-13 Score=137.69 Aligned_cols=118 Identities=19% Similarity=0.352 Sum_probs=86.8
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~ 651 (789)
+|.+++.... +..|+||++||.+.+ ...|......|++ +|.|+++|+|| +|.+.... ........
T Consensus 16 ~~~~l~y~~~--------G~gp~vv~lHG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G---~G~s~~~~-~~~~~~~~ 80 (293)
T d1ehya_ 16 PDVKIHYVRE--------GAGPTLLLLHGWPGF--WWEWSKVIGPLAE-HYDVIVPDLRG---FGDSEKPD-LNDLSKYS 80 (293)
T ss_dssp SSCEEEEEEE--------ECSSEEEEECCSSCC--GGGGHHHHHHHHT-TSEEEEECCTT---STTSCCCC-TTCGGGGC
T ss_pred CCEEEEEEEE--------CCCCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEecCCc---ccCCcccc-cccccccc
Confidence 5667764432 124789999997764 5677777777855 89999999998 55443221 12223345
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
++++...+..+++. ++.+++.|+|||+||.+++.++.++|++++++|+.+|..
T Consensus 81 ~~~~a~~~~~~~~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 133 (293)
T d1ehya_ 81 LDKAADDQAALLDA--LGIEKAYVVGHDFAAIVLHKFIRKYSDRVIKAAIFDPIQ 133 (293)
T ss_dssp HHHHHHHHHHHHHH--TTCCCEEEEEETHHHHHHHHHHHHTGGGEEEEEEECCSC
T ss_pred chhhhhHHHhhhhh--cCccccccccccccccchhcccccCccccceeeeeeccC
Confidence 66777777777665 456789999999999999999999999999999998854
|
| >d1jjfa_ c.69.1.2 (A:) Feruloyl esterase domain of the cellulosomal xylanase z {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase z species: Clostridium thermocellum [TaxId: 1515]
Probab=99.44 E-value=1.9e-13 Score=137.26 Aligned_cols=175 Identities=12% Similarity=-0.061 Sum_probs=109.0
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch----hh-HHHHHHHHHCC----cEEEEEcCCCCCCCCchhhc
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS----SY-SKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQ 641 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~----~~-~~~~~~la~~G----y~V~~~d~rGs~G~G~~~~~ 641 (789)
.+|.++++++++|+++++++++|+||++||+++..... .. ......+...+ +.+...+..........
T Consensus 31 ~~g~~~~~~v~lP~~y~~~~~~Pvvv~lHG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 107 (255)
T d1jjfa_ 31 ATNSTRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNTNAAGPGIAD--- 107 (255)
T ss_dssp TTTEEEEEEEEECTTCCTTSCBCEEEEECCTTCCTTTTTTTTTCHHHHHHHHHHTTSSCCCEEEEECCCCCCTTCSC---
T ss_pred CCCCEEEEEEEeCCCCCCCCCCcEEEEEecCCCChHHhhhhhHHHHHHHHHHHhhccCCcceeeecccccccccccc---
Confidence 46889999999999998999999999999977653221 11 11223333333 34444443221111000
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHc--CCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCc
Q 003886 642 SLPGKVGSQDVNDVLTAIDHVIDM--GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPD 719 (789)
Q Consensus 642 ~~~~~~~~~~~~D~~~~i~~l~~~--~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~ 719 (789)
.........+.+.+.++.++ ..+|.++++++|+|+||++++.++.++|++|+++++.+|..+....
T Consensus 108 ----~~~~~~~~~~~~li~~i~~~~~~~~d~~~i~i~G~S~GG~~a~~~a~~~Pd~F~~v~~~sg~~~~~~~-------- 175 (255)
T d1jjfa_ 108 ----GYENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPNTYPN-------- 175 (255)
T ss_dssp ----HHHHHHHHHHHTHHHHHHHHSCBCCSGGGEEEEEETHHHHHHHHHHHTCTTTCSEEEEESCCTTSCCH--------
T ss_pred ----cccchHHHHHHHHHHHHHHhhccccccceeEeeeccchhHHHHHHHHhCCCcccEEEEEccCcCCccc--------
Confidence 00011122333345555553 3478999999999999999999999999999999999886542110
Q ss_pred chhhhhccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 720 WCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
... ...+.....+...|++|.||++|..++. ..+++++|++
T Consensus 176 ---~~~----------------------~~~~~~~~~~~~~~~~i~~G~~D~~~~~--~~~~~~~L~~ 216 (255)
T d1jjfa_ 176 ---ERL----------------------FPDGGKAAREKLKLLFIACGTNDSLIGF--GQRVHEYCVA 216 (255)
T ss_dssp ---HHH----------------------CTTTTHHHHHHCSEEEEEEETTCTTHHH--HHHHHHHHHH
T ss_pred ---ccc----------------------cccHHHHhhccCCcceEEeCCCCCCchH--HHHHHHHHHH
Confidence 000 0001111223457899999999998764 5678887753
|
| >d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus acidocaldarius [TaxId: 405212]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Carboxylesterase species: Alicyclobacillus acidocaldarius [TaxId: 405212]
Probab=99.44 E-value=1.2e-13 Score=143.15 Aligned_cols=124 Identities=19% Similarity=0.206 Sum_probs=91.9
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCC-chhhHHHHHHHHHCC-cEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSSVG-YSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~-~~~~~~~~~~la~~G-y~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
.+|.++.+.+|.|++. .++.|+||++|||++... ...+......++.+| +.|+.+|||..++. ..
T Consensus 53 ~~g~~i~~~~y~P~~~--~~~~Pvvv~iHGGg~~~g~~~~~~~~~~~~a~~~~~~v~~v~Yrl~p~~-----------~~ 119 (308)
T d1u4na_ 53 LPGRTLKVRMYRPEGV--EPPYPALVYYHGGGWVVGDLETHDPVCRVLAKDGRAVVFSVDYRLAPEH-----------KF 119 (308)
T ss_dssp ETTEEEEEEEEECTTC--CSSEEEEEEECCSTTTSCCTTTTHHHHHHHHHHHTSEEEEECCCCTTTS-----------CT
T ss_pred cCCceEEEEEEecccc--CCCCCEEEEEecCeeeeeccccccchhhhhhhccccccccccccccccc-----------cc
Confidence 4788899999999853 457999999999976433 234555666666655 67889999975432 22
Q ss_pred cccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhCC----CceeEEEEeCCccc
Q 003886 649 SQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQAP----DKFVAAAARNPLCN 707 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~p----~~~~a~v~~~pv~~ 707 (789)
....+|+.++++|+.++. .+|++||+|+|+|+||++++.++.... ..+.+..+.++..+
T Consensus 120 p~~~~D~~~~~~~l~~~~~~~~~d~~ri~~~G~SaGG~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (308)
T d1u4na_ 120 PAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKERGGPALAFQLLIYPSTG 185 (308)
T ss_dssp THHHHHHHHHHHHHHTTTGGGTEEEEEEEEEEETHHHHHHHHHHHHHHHHTCCCCCCEEEESCCCC
T ss_pred ccccchhhhhhhHHHHhHHhcCCCcceEEEeeccccchhHHHHHHhhhhccCCCcccccccccccc
Confidence 345789999999998753 489999999999999999998877533 23456666666554
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.42 E-value=1.8e-11 Score=124.54 Aligned_cols=243 Identities=15% Similarity=0.104 Sum_probs=153.4
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
.....++||||++|+.....+ ..+..++ .+++..+.+...... ..+.|++||+.++.....
T Consensus 33 ~p~~va~spdG~~l~v~~~~~---~~i~v~d~~t~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~----- 94 (301)
T d1l0qa2 33 NPMGAVISPDGTKVYVANAHS---NDVSIIDTATNNVIATVPAGSSP----------QGVAVSPDGKQVYVTNMA----- 94 (301)
T ss_dssp SEEEEEECTTSSEEEEEEGGG---TEEEEEETTTTEEEEEEECSSSE----------EEEEECTTSSEEEEEETT-----
T ss_pred CceEEEEeCCCCEEEEEECCC---CEEEEEECCCCceeeeeeccccc----------cccccccccccccccccc-----
Confidence 356789999999997654332 1344444 455555555443333 578999999988765432
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (789)
...+.+++..+++.... +..........|+|||+. +
T Consensus 95 --------------------------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~dg~~----~ 130 (301)
T d1l0qa2 95 --------------------------------------SSTLSVIDTTSNTVAGT--VKTGKSPLGLALSPDGKK----L 130 (301)
T ss_dssp --------------------------------------TTEEEEEETTTTEEEEE--EECSSSEEEEEECTTSSE----E
T ss_pred --------------------------------------cceeeecccccceeeee--ccccccceEEEeecCCCe----e
Confidence 25678889888876554 334445667899999998 7
Q ss_pred EEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 314 ~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
++.... ...++.++. .+.................++||++.++......
T Consensus 131 ~~~~~~--------------~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (301)
T d1l0qa2 131 YVTNNG--------------DKTVSVINT-----------------VTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDS 179 (301)
T ss_dssp EEEETT--------------TTEEEEEET-----------------TTTEEEEEEECCSSEEEEEECTTSSEEEEEETTT
T ss_pred eeeecc--------------ccceeeeec-----------------cccceeeecccCCCceEEEeeccccceeeecccc
Confidence 666532 225666776 4444333333334456778999999887665432
Q ss_pred CCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 394 ~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
..+.+++....... .... .. .......|+++|+.+++.........|+.+
T Consensus 180 ----------~~~~~~~~~~~~~~-------~~~~---~~----------~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~ 229 (301)
T d1l0qa2 180 ----------MSISVIDTVTNSVI-------DTVK---VE----------AAPSGIAVNPEGTKAYVTNVDKYFNTVSMI 229 (301)
T ss_dssp ----------TEEEEEETTTTEEE-------EEEE---CS----------SEEEEEEECTTSSEEEEEEECSSCCEEEEE
T ss_pred ----------cccccccccceeee-------eccc---cc----------CCcceeeccccccccccccccceeeeeeee
Confidence 23555554442221 1111 00 012345789999999887766666678999
Q ss_pred ECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 474 NVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 474 dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
|+.+++...............+++||++|+.+.+... .|.+.|+.++
T Consensus 230 D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~---~i~v~D~~t~ 276 (301)
T d1l0qa2 230 DTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCN---TVSVIDTATN 276 (301)
T ss_dssp ETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTT---EEEEEETTTT
T ss_pred ecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCC---eEEEEECCCC
Confidence 9999887654433334456789999998877665443 4777786544
|
| >d3c8da2 c.69.1.2 (A:151-396) Enterochelin esterase, catalytic domain {Shigella flexneri 2a str. 2457T [TaxId: 198215]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Enterochelin esterase, catalytic domain species: Shigella flexneri 2a str. 2457T [TaxId: 198215]
Probab=99.41 E-value=5.8e-14 Score=140.30 Aligned_cols=180 Identities=12% Similarity=0.070 Sum_probs=112.6
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCC----cEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG----YSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G----y~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
.|.+...+++.|.+++ .+++|+||++||+++..... .......+.++| +.++.++.. .+....... ..
T Consensus 25 lg~~~~~~v~~P~~~~-~~~~Pvvv~lhG~~~~~~~~-~~~~l~~l~~~~~~~~~i~v~~~~~----~~~~~~~~~--~~ 96 (246)
T d3c8da2 25 LKNSRRVWIFTTGDVT-AEERPLAVLLDGEFWAQSMP-VWPVLTSLTHRQQLPPAVYVLIDAI----DTTHRAHEL--PC 96 (246)
T ss_dssp TTEEEEEEEEEC------CCCCEEEESSHHHHHHTSC-CHHHHHHHHHTTSSCSCEEEEECCC----SHHHHHHHS--SS
T ss_pred CCCEEEEEEEECCCCC-CCCCCEEEEeCCcchhccCc-HHHHHHHHHHhCCCCceEEeecccc----ccccccccc--Cc
Confidence 4778999999999875 46899999999965432222 223455666666 345555432 111111111 11
Q ss_pred CcccHHHHHH-HHHHHHHc--CCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhh
Q 003886 648 GSQDVNDVLT-AIDHVIDM--GLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 724 (789)
Q Consensus 648 ~~~~~~D~~~-~i~~l~~~--~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~ 724 (789)
+..-...+.+ .+.++.++ ..+|+++++|+|+|+||++++.++.++|++|+++++.+|..++.....
T Consensus 97 ~~~~~~~~~~el~~~v~~~~~~~~d~~~~~i~G~S~GG~~al~~~~~~P~~F~a~~~~sg~~~~~~~~~----------- 165 (246)
T d3c8da2 97 NADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRGG----------- 165 (246)
T ss_dssp CHHHHHHHHHTHHHHHHHHSCCCCCGGGCEEEEETHHHHHHHHHHHHCTTTCCEEEEESCCTTTTCTTS-----------
T ss_pred cHHHHHHHHHHhhhHHHHhcccccCccceEEEecCchhHHHhhhhccCCchhcEEEcCCcccccccCCc-----------
Confidence 1111222222 22333332 337889999999999999999999999999999999999765321100
Q ss_pred hccCccccccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 725 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.....+.+.++.....+...|+++.+|+.|..+ ..++++|+++|++
T Consensus 166 ----------------~~~~~~~~~~~~~~~~~~~~~~~l~~G~~D~~~-~~~~~~l~~~L~~ 211 (246)
T d3c8da2 166 ----------------QQEGVLLEKLKAGEVSAEGLRIVLEAGIREPMI-MRANQALYAQLHP 211 (246)
T ss_dssp ----------------SSCCHHHHHHHTTSSCCCSCEEEEEEESSCHHH-HHHHHHHHHHTGG
T ss_pred ----------------cchHHHHHHhhhhhhhccCCCeEEEecCCCcch-hHHHHHHHHHHHH
Confidence 001122333455667778899999999999877 5788999999875
|
| >d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp. [TaxId: 51671]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloperoxidase domain: Gamma-lactamase species: Aureobacterium sp. [TaxId: 51671]
Probab=99.41 E-value=4.6e-13 Score=135.50 Aligned_cols=103 Identities=21% Similarity=0.295 Sum_probs=75.7
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.|.||++||.+.+ ...|...+..|.++||.|+++|+|| +|.+... . ....++++...+..+++. ++.+
T Consensus 23 g~~illlHG~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G---~G~S~~~--~---~~~~~~~~~~di~~~i~~--l~~~ 90 (279)
T d1hkha_ 23 GQPVVLIHGYPLD--GHSWERQTRELLAQGYRVITYDRRG---FGGSSKV--N---TGYDYDTFAADLHTVLET--LDLR 90 (279)
T ss_dssp SEEEEEECCTTCC--GGGGHHHHHHHHHTTEEEEEECCTT---STTSCCC--S---SCCSHHHHHHHHHHHHHH--HTCC
T ss_pred CCeEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEechh---hCCcccc--c---cccchhhhhhhhhhhhhh--cCcC
Confidence 4778999997764 5677777888889999999999998 5554321 1 123456665555555554 3557
Q ss_pred cEEEEEcCccH-HHHHHHHHhCCCceeEEEEeCCcc
Q 003886 672 KVTVVGGSHGG-FLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 672 rv~l~G~S~GG-~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
++.|+|||+|| .++..++.++|++++++|+.++..
T Consensus 91 ~~~lvGhS~Gg~~~a~~~a~~~p~~v~~lvli~~~~ 126 (279)
T d1hkha_ 91 DVVLVGFSMGTGELARYVARYGHERVAKLAFLASLE 126 (279)
T ss_dssp SEEEEEETHHHHHHHHHHHHHCSTTEEEEEEESCCC
T ss_pred ccccccccccccchhhhhccccccccceeEEeeccC
Confidence 89999999996 566667777899999999987653
|
| >d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85a species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.41 E-value=2.4e-13 Score=139.18 Aligned_cols=205 Identities=14% Similarity=0.075 Sum_probs=126.7
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH---HHHHHHHCCcEEEEEcCCCCCCCCchhhccCCC--C
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG--K 646 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~--~ 646 (789)
.|.++...++.| .+++|+|+++||+++......|.. ..+.+++.|++|++++..+...++......... .
T Consensus 19 ~~r~~~~~v~~p-----~~~~Pvl~llhG~~~~~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 93 (288)
T d1sfra_ 19 MGRDIKVQFQSG-----GANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSDWYQPACGKAGC 93 (288)
T ss_dssp TTEEEEEEEECC-----STTBCEEEEECCTTCCSSSCHHHHHCCHHHHHTTSSCEEEEECCCTTCTTCBCSSCEEETTEE
T ss_pred CCcEEEEEEeCC-----CCCceEEEEcCCCCCCCcchhhhhhccHHHHHHhCCCEEEEeccCCCCCCccccCcccccccc
Confidence 567777666655 468999999999776544444433 345677899999999987654443322211100 0
Q ss_pred CC-cccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhh
Q 003886 647 VG-SQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVES 725 (789)
Q Consensus 647 ~~-~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~ 725 (789)
.+ ..+..-+.+.+.++.++..+|++|++|+|+|+||++|+.++.++|++|+++++.+|..+......... .......
T Consensus 94 ~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~S~GG~~A~~~a~~~pd~f~av~~~Sg~~~~~~~~~~~~--~~~~~~~ 171 (288)
T d1sfra_ 94 QTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSMAASSALTLAIYHPQQFVYAGAMSGLLDPSQAMGPTL--IGLAMGD 171 (288)
T ss_dssp ECCBHHHHHHTHHHHHHHHHHCBCSSSEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCSCTTSTTHHHH--HHHHHHH
T ss_pred cchhHHHHHHHHhHHHHHHhcCCCCCceEEEEEccHHHHHHHHHHhccccccEEEEecCcccccccccchh--hhhhhhh
Confidence 11 11222345678888887779999999999999999999999999999999999999876432210000 0000000
Q ss_pred ccCccccccCCCCChhhHHHHHhcCccccCCC---CCCCEEEEEeCCCCCCCh--------------HHHHHHHHHCC
Q 003886 726 YGSKGKDSFTESPSVEDLTRFHSKSPISHISK---VKTPTIFLLGAQDLRVPV--------------SNGLQVIYHIP 786 (789)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~---i~~P~Lii~G~~D~~vp~--------------~~~~~l~~~l~ 786 (789)
........+.+.. +...+...+|...+.+ -+.++++.+|..|..++. .++.+|.++|+
T Consensus 172 ~~~~~~~~~~g~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~d~~~~~~~~~~~~~~e~~~~~~~~~l~~~l~ 246 (288)
T d1sfra_ 172 AGGYKASDMWGPK---EDPAWQRNDPLLNVGKLIANNTRVWVYCGNGKPSDLGGNNLPAKFLEGFVRTSNIKFQDAYN 246 (288)
T ss_dssp TTSCCHHHHHCST---TSTHHHHSCTTTTHHHHHHHTCEEEEECCCSCCBTTBCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHhhhcCCc---chhhhHhcCHHHHHHHhhhcCCeEEEEeCCCCCCCccccccccchhHHHHHHHHHHHHHHHH
Confidence 0000000011111 1123455666655433 246889999999988774 56667777664
|
| >d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens [TaxId: 615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Proline iminopeptidase-like domain: Proline aminopeptidase species: Serratia marcescens [TaxId: 615]
Probab=99.41 E-value=7.2e-13 Score=135.63 Aligned_cols=122 Identities=20% Similarity=0.300 Sum_probs=86.3
Q ss_pred eecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCC
Q 003886 568 LTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKV 647 (789)
Q Consensus 568 ~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~ 647 (789)
++.+||.+++...+-++ ..|.||++||++++ ...|......| ++||.|+++|.|| +|.+.... ..
T Consensus 16 v~~~dG~~i~y~~~G~~------~g~pvvllHG~~~~--~~~w~~~~~~l-~~~~~vi~~D~rG---~G~S~~~~---~~ 80 (313)
T d1wm1a_ 16 LDTGDGHRIYWELSGNP------NGKPAVFIHGGPGG--GISPHHRQLFD-PERYKVLLFDQRG---CGRSRPHA---SL 80 (313)
T ss_dssp EECSSSCEEEEEEEECT------TSEEEEEECCTTTC--CCCGGGGGGSC-TTTEEEEEECCTT---STTCBSTT---CC
T ss_pred EEeCCCcEEEEEEecCC------CCCeEEEECCCCCc--ccchHHHHHHh-hcCCEEEEEeCCC---cccccccc---cc
Confidence 34568999987666432 23678889998875 34554444344 5699999999998 55543221 12
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 648 GSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 648 ~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
......+..+.+..++++ .+..++.++|||+||.++..++..+|++++.+++.++..
T Consensus 81 ~~~~~~~~~~d~~~~~~~--~~~~~~~~vg~s~g~~~~~~~a~~~~~~v~~~v~~~~~~ 137 (313)
T d1wm1a_ 81 DNNTTWHLVADIERLREM--AGVEQWLVFGGSWGSTLALAYAQTHPERVSEMVLRGIFT 137 (313)
T ss_dssp TTCSHHHHHHHHHHHHHH--TTCSSEEEEEETHHHHHHHHHHHHCGGGEEEEEEESCCC
T ss_pred cccchhhHHHHHHhhhhc--cCCCcceeEeeecCCchhhHHHHHHhhhheeeeeccccc
Confidence 223355555556666655 456889999999999999999999999999999887654
|
| >d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Uncharacterized protein Atu2452 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.39 E-value=4e-13 Score=129.72 Aligned_cols=154 Identities=20% Similarity=0.155 Sum_probs=103.4
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHH---
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID--- 664 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~--- 664 (789)
..+..|+||++||+++. ...|....+.++ .++.|+.++.+... .+.... ......+..+.+++...++.+..
T Consensus 13 ~~~~~P~vi~lHG~G~~--~~~~~~~~~~l~-~~~~v~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (203)
T d2r8ba1 13 GVAGAPLFVLLHGTGGD--ENQFFDFGARLL-PQATILSPVGDVSE-HGAARF-FRRTGEGVYDMVDLERATGKMADFIK 87 (203)
T ss_dssp CCTTSCEEEEECCTTCC--HHHHHHHHHHHS-TTSEEEEECCSEEE-TTEEES-SCBCGGGCBCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCC--HHHHHHHHHHhc-cCCeEEEecccccc-cccccc-ccccCccccchhHHHHHHHHHHHHHH
Confidence 45568999999996653 455655556555 46888888766321 121111 11112222334444444333322
Q ss_pred --cCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhh
Q 003886 665 --MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVED 742 (789)
Q Consensus 665 --~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 742 (789)
...+|.++|+++|+|+||.+++.++..+|+.+.++++.+|......
T Consensus 88 ~~~~~~~~~~v~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~~~~~~~~-------------------------------- 135 (203)
T d2r8ba1 88 ANREHYQAGPVIGLGFSNGANILANVLIEQPELFDAAVLMHPLIPFEP-------------------------------- 135 (203)
T ss_dssp HHHHHHTCCSEEEEEETHHHHHHHHHHHHSTTTCSEEEEESCCCCSCC--------------------------------
T ss_pred HhhhcCCCceEEEEEecCHHHHHHHHHHhhhhcccceeeecccccccc--------------------------------
Confidence 1226889999999999999999999999999999999988642100
Q ss_pred HHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 743 LTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 743 ~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
.........|++++||++|.+||++++.+++++|++
T Consensus 136 ---------~~~~~~~~~~~~i~hG~~D~~vp~~~~~~~~~~L~~ 171 (203)
T d2r8ba1 136 ---------KISPAKPTRRVLITAGERDPICPVQLTKALEESLKA 171 (203)
T ss_dssp ---------CCCCCCTTCEEEEEEETTCTTSCHHHHHHHHHHHHH
T ss_pred ---------ccccccccchhhccccCCCCcccHHHHHHHHHHHHH
Confidence 011123457999999999999999999999998863
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.35 E-value=1.1e-10 Score=121.96 Aligned_cols=306 Identities=9% Similarity=-0.013 Sum_probs=170.9
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCcceecccEEEEeCCCCCeEEEEecCCC-----
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN----- 176 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~----- 176 (789)
..+|||+++ |+.... .+.....+|+++.. .++.. .+.. +....++|||||++|++......
T Consensus 8 a~spdg~~~-~v~~~~---~~~~~~~v~v~D~~--tg~~~~~~~~-------g~~~~~a~SpDg~~l~v~~~~~~~~~~g 74 (355)
T d2bbkh_ 8 APAPDARRV-YVNDPA---HFAAVTQQFVIDGE--AGRVIGMIDG-------GFLPNPVVADDGSFIAHASTVFSRIARG 74 (355)
T ss_dssp CCCCCTTEE-EEEECG---GGCSSEEEEEEETT--TTEEEEEEEE-------CSSCEEEECTTSSCEEEEEEEEEETTEE
T ss_pred eeCCCCCEE-EEEecc---cCCCcCeEEEEECC--CCcEEEEEEC-------CCCCceEEcCCCCEEEEEeCCCcccccc
Confidence 457999999 544332 23456789998863 23322 2211 23447899999999988754211
Q ss_pred CCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCC
Q 003886 177 ESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWK 254 (789)
Q Consensus 177 ~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (789)
.......+| ..++..+.+.........+ ......+.|||||+++++....
T Consensus 75 ~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~~~v~~~~-------------------------- 126 (355)
T d2bbkh_ 75 ERTDYVEVFDPVTLLPTADIELPDAPRFLV--GTYPWMTSLTPDGKTLLFYQFS-------------------------- 126 (355)
T ss_dssp EEEEEEEEECTTTCCEEEEEEETTCCCCCB--SCCGGGEEECTTSSEEEEEECS--------------------------
T ss_pred CCCCEEEEEECCCCCEEEEEecCCcceeec--CCCCceEEEecCCCeeEEecCC--------------------------
Confidence 111234555 4566655555432221111 0112468999999998775332
Q ss_pred CcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC------CccceEEEeeCCCCCccEEEEEeecCCceeeeee
Q 003886 255 GQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS------LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK 328 (789)
Q Consensus 255 ~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~------~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~ 328 (789)
....+.+++..+++.......+.. .....+.+++||+. +++.....
T Consensus 127 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~----~~v~~~~~-------- 178 (355)
T d2bbkh_ 127 ----------------PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSL----AKVAFGTE-------- 178 (355)
T ss_dssp ----------------SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCE----EEEECCSS--------
T ss_pred ----------------CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCE----EEEEecCC--------
Confidence 225677888888775443111111 12335678888886 55544221
Q ss_pred eeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEE
Q 003886 329 YCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 408 (789)
Q Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~ 408 (789)
..+...+. ..... ........+.+++++..+++.+... .+++
T Consensus 179 ------~~~~~~~~-----------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~v 220 (355)
T d2bbkh_ 179 ------GTPEITHT-----------------EVFHP----EDEFLINHPAYSQKAGRLVWPTYTG-----------KIHQ 220 (355)
T ss_dssp ------SCCEEEEC-----------------CCCSC----TTSCBCSCCEEETTTTEEEEEBTTS-----------EEEE
T ss_pred ------CeEEEEec-----------------ccccc----eecceeeeccccCCCCeEEEecCCC-----------eEEE
Confidence 13334443 11111 1112245578888999998887543 5899
Q ss_pred eecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeC-------CeEEEEEEECCCCcEE
Q 003886 409 IDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-------SSQVIISVNVSSGELL 481 (789)
Q Consensus 409 ~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~-------~~~~l~~~dl~tg~~~ 481 (789)
+++.++....+............. ...| .....+.+++|++.+++..... +...|+.+|+.+++..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~p----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~ 293 (355)
T d2bbkh_ 221 IDLSSGDAKFLPAVEALTEAERAD---GWRP----GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL 293 (355)
T ss_dssp EECTTSSCEECCCEESSCHHHHHT---TEEE----CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred EecCCCcEEEEeccCCcccceEee---eeec----cceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEE
Confidence 998876543221110000000000 0000 1234567899999988877654 2467999999988876
Q ss_pred EecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 003886 482 RITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 524 (789)
Q Consensus 482 ~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~ 524 (789)
.............+++||+.++++..... ..|+++|..+++
T Consensus 294 ~~~~~~~~~~~~a~spDG~~~l~v~~~~d--~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 294 AKFEMGHEIDSINVSQDEKPLLYALSTGD--KTLYIHDAESGE 334 (355)
T ss_dssp EEEEEEEEECEEEECCSSSCEEEEEETTT--TEEEEEETTTCC
T ss_pred EEecCCCCEEEEEEcCCCCeEEEEEECCC--CEEEEEECCCCC
Confidence 54333323345689999997766655433 458888876543
|
| >d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Haloalkane dehalogenase domain: Haloalkane dehalogenase species: Sphingomonas paucimobilis, UT26, LinB [TaxId: 13689]
Probab=99.32 E-value=7.5e-12 Score=126.94 Aligned_cols=121 Identities=13% Similarity=0.102 Sum_probs=81.7
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCc
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGS 649 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~ 649 (789)
+-+|.+++.... ++.|.||++||.+.+ ...|...+..|+ .+|.|+++|+|| +|.+......... .
T Consensus 14 ~~~g~~i~y~~~--------G~g~~vvllHG~~~~--~~~~~~~~~~L~-~~~~vi~~Dl~G---~G~S~~~~~~~~~-~ 78 (298)
T d1mj5a_ 14 EIKGRRMAYIDE--------GTGDPILFQHGNPTS--SYLWRNIMPHCA-GLGRLIACDLIG---MGDSDKLDPSGPE-R 78 (298)
T ss_dssp EETTEEEEEEEE--------SCSSEEEEECCTTCC--GGGGTTTGGGGT-TSSEEEEECCTT---STTSCCCSSCSTT-S
T ss_pred EECCEEEEEEEE--------cCCCcEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEEeCCC---CCCCCCCcccccc-c
Confidence 347888874432 124788999998764 556766666775 469999999998 5554332212112 2
Q ss_pred ccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 650 QDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
....+..+.+..++... ...+++.++|||+||.+++.++.++|++++++++.++..
T Consensus 79 ~~~~~~~~~~~~~~~~~-~~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l~~~~~~~ 134 (298)
T d1mj5a_ 79 YAYAEHRDYLDALWEAL-DLGDRVVLVVHDWGSALGFDWARRHRERVQGIAYMEAIA 134 (298)
T ss_dssp SCHHHHHHHHHHHHHHT-TCTTCEEEEEEHHHHHHHHHHHHHTGGGEEEEEEEEECC
T ss_pred cccchhhhhhccccccc-cccccCeEEEecccchhHHHHHHHHHhhhheeecccccc
Confidence 23444444444433321 346789999999999999999999999999998877643
|
| >d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the cellulosomal xylanase y {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase domain: Feruloyl esterase domain of the cellulosomal xylanase y species: Clostridium thermocellum [TaxId: 1515]
Probab=99.31 E-value=3.3e-13 Score=136.82 Aligned_cols=132 Identities=11% Similarity=-0.020 Sum_probs=89.1
Q ss_pred eeecCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch-----hhHHHHHHHH----HCCcEEEEEcCCCCCCCCc
Q 003886 567 NLTKGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-----SYSKSLAFLS----SVGYSLLIVNYRGSLGFGE 637 (789)
Q Consensus 567 ~~~~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-----~~~~~~~~la----~~Gy~V~~~d~rGs~G~G~ 637 (789)
+++..+| +...++|+|+++++++++|+|+++||+++..... ........+. ...+.|+.+++++..+.+.
T Consensus 31 ~~~~~~~-~r~~~vylP~~y~~~k~yPvl~~lhG~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 109 (273)
T d1wb4a1 31 TYTGING-TKSLNVYLPYGYDPNKKYNIFYLMHGGGENENTIFSNDVKLQNILDHAIMNGELEPLIVVTPTFNGGNCTAQ 109 (273)
T ss_dssp EEEETTE-EEEEEEEECTTCCTTSCCEEEEEECCTTCCTTSTTSTTTCHHHHHHHHHHHTSSCCEEEEECCSCSTTCCTT
T ss_pred EEecCCC-eEEEEEEeCCCCCCCCCceEEEEEeCCCCCcchhhhhccchhHHHHhhhhhhccCCceeeccccCCCCCccc
Confidence 3455555 4589999999998889999999999987643211 1111222222 2468999999887655544
Q ss_pred hhhccCCCCCCcccHHHHHHHH---------HHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccc
Q 003886 638 EALQSLPGKVGSQDVNDVLTAI---------DHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCN 707 (789)
Q Consensus 638 ~~~~~~~~~~~~~~~~D~~~~i---------~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~ 707 (789)
.+.... ..++...+ +.+..+..+|.++++|+|+|+||++|+.++.++|++|+++++.+|...
T Consensus 110 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~G~S~GG~~a~~~a~~~pd~f~a~~~~sg~~~ 180 (273)
T d1wb4a1 110 NFYQEF--------RQNVIPFVESKYSTYAESTTPQGIAASRMHRGFGGFAMGGLTTWYVMVNCLDYVAYFMPLSGDYW 180 (273)
T ss_dssp THHHHH--------HHTHHHHHHHHSCCSCSSCSHHHHHTTGGGEEEEEETHHHHHHHHHHHHHTTTCCEEEEESCCCC
T ss_pred cchhcc--------cccccchhhhhhhhhhhhhhhhcccCCccceEEEeeCCcchhhhhhhhcCCCcceEEEEeCcccc
Confidence 332111 11111111 111222337999999999999999999999999999999999999764
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.29 E-value=4.1e-11 Score=129.58 Aligned_cols=119 Identities=15% Similarity=0.164 Sum_probs=68.6
Q ss_pred eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccc
Q 003886 364 VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYS 443 (789)
Q Consensus 364 ~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~ 443 (789)
...|..+.......+|||||++|+...... ........|.+||+.+++.... +.++-....-.. ..
T Consensus 296 ~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~----~s~~~~~tv~vwd~~t~~~~~~------~~~~~~~~~~~~----~~ 361 (426)
T d1hzua2 296 VAELQGQGGGSLFIKTHPKSSHLYVDTTFN----PDARISQSVAVFDLKNLDAKYQ------VLPIAEWADLGE----GA 361 (426)
T ss_dssp EEEEECSSSCCCCEECCTTCSEEEECCTTC----SSHHHHTCEEEEETTCTTSCCE------EECHHHHHCCCS----SC
T ss_pred eEEEecCCCceeEEEcCCCCceEEEeecCC----CCcccCCEEEEEECCCCCcCeE------EeccchhcccCC----CC
Confidence 344555556678899999999998543221 0001234699999988665311 111000000000 01
Q ss_pred cCCCCCccccCCCEEEEEEEe--CCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCE
Q 003886 444 SSILSNPWLSDGCTMLLSSIW--GSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDN 501 (789)
Q Consensus 444 ~~~~~~~ws~Dg~~l~~~~~~--~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~ 501 (789)
..+..+.|||||++|+++... .....|..+|..|+++........ .++|+|++
T Consensus 362 ~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~-----~~tp~Gk~ 416 (426)
T d1hzua2 362 KRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR-----LITPTGKF 416 (426)
T ss_dssp CCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT-----CCSEEEEE
T ss_pred ccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC-----ccCCCceE
Confidence 123356799999999887532 234567778999999877655543 34566654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=6.9e-10 Score=114.46 Aligned_cols=280 Identities=15% Similarity=0.107 Sum_probs=145.6
Q ss_pred ceEEEEEeechhhcccceeEEEEEEeecCCC-CccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecC
Q 003886 109 TQAMFSISQPNLLANKRKKFMLSTVISKENE-NSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQ 187 (789)
Q Consensus 109 ~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~ 187 (789)
++++|+.+.. ...|.+++++..+. +..+....+ +.+...+|||||++|++.... ++.-++|.+...
T Consensus 3 ~~~v~v~~~~-------~~~I~v~~~~~~~~l~~~~~~~~~-----~~v~~la~spDG~~L~v~~~~-d~~i~~~~i~~~ 69 (333)
T d1ri6a_ 3 KQTVYIASPE-------SQQIHVWNLNHEGALTLTQVVDVP-----GQVQPMVVSPDKRYLYVGVRP-EFRVLAYRIAPD 69 (333)
T ss_dssp EEEEEEEEGG-------GTEEEEEEECTTSCEEEEEEEECS-----SCCCCEEECTTSSEEEEEETT-TTEEEEEEECTT
T ss_pred ceEEEEECCC-------CCcEEEEEEcCCCCeEEEEEEcCC-----CCEeEEEEeCCCCEEEEEECC-CCeEEEEEEeCC
Confidence 4566665532 23455555543332 222222333 457788999999999655433 244445555533
Q ss_pred C-ceeEEEec--CCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcc
Q 003886 188 S-QLEKEFHV--PQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWG 264 (789)
Q Consensus 188 ~-~~~~~~~~--~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g 264 (789)
+ ........ .... ..++|||||++|+.....
T Consensus 70 ~~~~~~~~~~~~~~~p----------~~l~~spDg~~l~v~~~~------------------------------------ 103 (333)
T d1ri6a_ 70 DGALTFAAESALPGSL----------THISTDHQGQFVFVGSYN------------------------------------ 103 (333)
T ss_dssp TCCEEEEEEEECSSCC----------SEEEECTTSSEEEEEETT------------------------------------
T ss_pred CCcEEEeeecccCCCc----------eEEEEcCCCCEEeecccC------------------------------------
Confidence 3 32222222 1222 579999999998775432
Q ss_pred cccCCccCceEEEEEccCCceEecc-CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecc
Q 003886 265 ETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVS 343 (789)
Q Consensus 265 ~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~ 343 (789)
...+.+++.+........ .......+..+.++||++. ++...... ..|+.++..
T Consensus 104 -------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~----~~~~~~~~--------------~~i~~~~~~ 158 (333)
T d1ri6a_ 104 -------AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRT----LWVPALKQ--------------DRICLFTVS 158 (333)
T ss_dssp -------TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSE----EEEEEGGG--------------TEEEEEEEC
T ss_pred -------CCceeeeccccccceecccccCCCccceEEEeeeccee----eecccccc--------------ceeeEEEec
Confidence 245666666655433221 0122334567899999997 66554221 245555541
Q ss_pred cccchhhhhhhhcCCCCCCCee-----ec-CCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCC
Q 003886 344 LYKSEASELELKESSSEDLPVV-----NL-TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (789)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~-----~L-t~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~ 417 (789)
...... .. ..........+|+++++.++...... ....++++......
T Consensus 159 ----------------~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~ 212 (333)
T d1ri6a_ 159 ----------------DDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELN----------SSVDVWELKDPHGN 212 (333)
T ss_dssp ----------------TTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTT----------TEEEEEESSCTTSC
T ss_pred ----------------cCCcceeeeceeeeeecCCCccEEEEeccceeEEeecccc----------CceEEEeecccccc
Confidence 111111 11 11122345678999999876655432 23445554332221
Q ss_pred CcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe--cCCCCCceeEEe
Q 003886 418 SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI--TPAESNFSWSLL 495 (789)
Q Consensus 418 ~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~l--t~~~~~~~~~~~ 495 (789)
+. ....+...+.. +.+ ........+++|++++++.....+...+|.++..++..+.. ...........|
T Consensus 213 -~~----~~~~~~~~~~~--~~~--~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~ 283 (333)
T d1ri6a_ 213 -IE----CVQTLDMMPEN--FSD--TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNV 283 (333)
T ss_dssp -CE----EEEEEECSCTT--CCS--CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEE
T ss_pred -ee----eeeeeeeeecC--CCc--cccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEE
Confidence 10 00111111110 000 00122456899999888777677788888888766554433 222222234689
Q ss_pred eecCCEEEEEEe
Q 003886 496 TLDGDNIIAVSS 507 (789)
Q Consensus 496 s~dg~~l~~~~s 507 (789)
+|||++|+...+
T Consensus 284 spDGk~l~va~~ 295 (333)
T d1ri6a_ 284 DHSGKYLIAAGQ 295 (333)
T ss_dssp CTTSSEEEEECT
T ss_pred eCCCCEEEEEEC
Confidence 999998765543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.29 E-value=1.6e-09 Score=113.89 Aligned_cols=300 Identities=8% Similarity=-0.027 Sum_probs=161.4
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCcceecccEEEEeCCCCCeEEEEecCCC-----C
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-----E 177 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~-----~ 177 (789)
.||||+++++.... .......+|.++..+ ++.. ++.. +....++|||||++|++...... .
T Consensus 28 ~spdg~~~~~~~~~----~~~~~~~v~v~D~~t--g~~~~~~~~-------~~~~~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 28 PGADGRRSYINLPA----HHSAIIQQWVLDAGS--GSILGHVNG-------GFLPNPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred cCCCCCEEEEEccc----ccCCCceEEEEECCC--CCEEEEEeC-------CCCccEEEcCCCCEEEEEeecCCcccccc
Confidence 47999999665322 223455789887532 2322 2221 22336899999999999865431 1
Q ss_pred CCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCC
Q 003886 178 SPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKG 255 (789)
Q Consensus 178 ~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (789)
......+| .+++....+..+......+ ...-..+.|||||+.+++.....
T Consensus 95 ~~~~v~v~D~~t~~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~~~v~~~~~-------------------------- 146 (373)
T d2madh_ 95 RTDYVEVFDPVTFLPIADIELPDAPRFDV--GPYSWMNANTPNNADLLFFQFAA-------------------------- 146 (373)
T ss_pred cceEEEEEECCCCcEEEEEecCCcceeEe--ccCCCcEEEEeCCCcEEEEEEcC--------------------------
Confidence 12234455 4555555554432210000 00114678999999888764432
Q ss_pred cceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCc
Q 003886 256 QGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPC 335 (789)
Q Consensus 256 ~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~ 335 (789)
...+.+++..++++.... . ....+.++|||+. ++++... ..
T Consensus 147 ----------------~~~~~~~~~~~~~~~~~~--~---~~~~~~~s~~g~~----~~v~~~~--------------dg 187 (373)
T d2madh_ 147 ----------------GPAVGLVVQGGSSDDQLL--S---SPTCYHIHPGAPS----TFYLLCA--------------QG 187 (373)
T ss_pred ----------------CCceEEeeccCCeEEEEe--c---cceeEEEecCCCc----EEEEEcC--------------CC
Confidence 245666777776655441 1 2346789999997 6554421 22
Q ss_pred ceEEEecccccchhhhhhhhcCCCCCCCeeec-CC------CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEE
Q 003886 336 ALYAVRVSLYKSEASELELKESSSEDLPVVNL-TE------SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHR 408 (789)
Q Consensus 336 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-t~------~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~ 408 (789)
.+++++. .++..... .. .........++++|..+ +.+.. ..+++
T Consensus 188 ~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~~v~~ 238 (373)
T d2madh_ 188 GLAKTDH-----------------AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV-WPVYS-----------GKILQ 238 (373)
T ss_pred eEEEEEc-----------------CCceeeEEEeeeccccCccceeeeEEECCCceEE-EecCC-----------ceEEE
Confidence 5777776 33332221 11 11122344566666544 33322 24666
Q ss_pred eecCCCCCCCcccc---eeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeC-------CeEEEEEEECCCC
Q 003886 409 IDWPTNGNFSSLEK---IVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG-------SSQVIISVNVSSG 478 (789)
Q Consensus 409 ~d~~~~~~~~~t~~---~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~-------~~~~l~~~dl~tg 478 (789)
++..++....+... ......+.. .+ .......|++|++.+++..... ....++.+|+.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~ 308 (373)
T d2madh_ 239 ADISAAGATNKAPIDALSGGRKADTW------RP----GGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG 308 (373)
T ss_pred EEcCCCeEEEEEeeccccCcEEeeee------cc----CcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC
Confidence 76655433211100 000111000 00 1123457889998887654322 2346888899888
Q ss_pred cEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecccC
Q 003886 479 ELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDKA 524 (789)
Q Consensus 479 ~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~~ 524 (789)
+...............|++||+.++++..+.. ..+++.|..+++
T Consensus 309 ~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d--~~v~v~D~~tg~ 352 (373)
T d2madh_ 309 QTSSQISLGHDVDAISVAQDGGPDLYALSAGT--EVLHIYDAGAGD 352 (373)
T ss_pred cEEEEecCCCCeeEEEECCCCCEEEEEEeCCC--CeEEEEECCCCC
Confidence 87665544444455789999998766554433 247888876553
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.28 E-value=3.2e-10 Score=115.11 Aligned_cols=242 Identities=12% Similarity=0.124 Sum_probs=145.6
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
..||||++++.... ....|.++++.+. .....+... ......+|++||+++++....+ ..+
T Consensus 38 a~spdG~~l~v~~~--------~~~~i~v~d~~t~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----~~~ 98 (301)
T d1l0qa2 38 VISPDGTKVYVANA--------HSNDVSIIDTATN-NVIATVPAG------SSPQGVAVSPDGKQVYVTNMAS----STL 98 (301)
T ss_dssp EECTTSSEEEEEEG--------GGTEEEEEETTTT-EEEEEEECS------SSEEEEEECTTSSEEEEEETTT----TEE
T ss_pred EEeCCCCEEEEEEC--------CCCEEEEEECCCC-ceeeeeecc------cccccccccccccccccccccc----cee
Confidence 35799998854322 2235777775322 112222211 2356788999999988765543 234
Q ss_pred EEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceee
Q 003886 183 ELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (789)
Q Consensus 183 ~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (789)
.++ ..++....+...... ..+.|+|||+.+++....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~dg~~~~~~~~~-------------------------------- 136 (301)
T d1l0qa2 99 SVIDTTSNTVAGTVKTGKSP----------LGLALSPDGKKLYVTNNG-------------------------------- 136 (301)
T ss_dssp EEEETTTTEEEEEEECSSSE----------EEEEECTTSSEEEEEETT--------------------------------
T ss_pred eecccccceeeeeccccccc----------eEEEeecCCCeeeeeecc--------------------------------
Confidence 444 345555555443333 578999999998876432
Q ss_pred CCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEE
Q 003886 261 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (789)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (789)
...+.+++..+++.... .........+.|+||++. ++.... .. ..++..
T Consensus 137 -----------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~-~~-------------~~~~~~ 185 (301)
T d1l0qa2 137 -----------DKTVSVINTVTKAVINT--VSVGRSPKGIAVTPDGTK----VYVANF-DS-------------MSISVI 185 (301)
T ss_dssp -----------TTEEEEEETTTTEEEEE--EECCSSEEEEEECTTSSE----EEEEET-TT-------------TEEEEE
T ss_pred -----------ccceeeeeccccceeee--cccCCCceEEEeeccccc----eeeecc-cc-------------cccccc
Confidence 25678888888876554 334445678899999997 665542 11 134444
Q ss_pred ecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcc
Q 003886 341 RVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 420 (789)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t 420 (789)
+. ...................|++||+.++...... ....|+++|+.+++...
T Consensus 186 ~~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~--------~~~~v~v~D~~t~~~~~-- 238 (301)
T d1l0qa2 186 DT-----------------VTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDK--------YFNTVSMIDTGTNKITA-- 238 (301)
T ss_dssp ET-----------------TTTEEEEEEECSSEEEEEEECTTSSEEEEEEECS--------SCCEEEEEETTTTEEEE--
T ss_pred cc-----------------cceeeeecccccCCcceeeccccccccccccccc--------eeeeeeeeecCCCeEEE--
Confidence 43 3333333322333456789999999987665432 23469999987754321
Q ss_pred cceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003886 421 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (789)
Q Consensus 421 ~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~l 483 (789)
.++.. ..+..++|+|||++||++...++ .|..+|++++++..-
T Consensus 239 -----~~~~~-------------~~~~~va~spdg~~l~va~~~~~--~i~v~D~~t~~~~~~ 281 (301)
T d1l0qa2 239 -----RIPVG-------------PDPAGIAVTPDGKKVYVALSFCN--TVSVIDTATNTITAT 281 (301)
T ss_dssp -----EEECC-------------SSEEEEEECTTSSEEEEEETTTT--EEEEEETTTTEEEEE
T ss_pred -----EEcCC-------------CCEEEEEEeCCCCEEEEEECCCC--eEEEEECCCCeEEEE
Confidence 01100 01235789999999877754444 566679999986543
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=5.3e-10 Score=116.33 Aligned_cols=230 Identities=13% Similarity=0.052 Sum_probs=143.7
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCc-cceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeE
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENS-VTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQ 181 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~ 181 (789)
.++|||+.++... ..+.|.++++.....+. ..+.... ..+....|+|++..++...... .+
T Consensus 104 ~~s~dg~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~s~~~d~----~i 165 (337)
T d1gxra_ 104 KLLPDGCTLIVGG---------EASTLSIWDLAAPTPRIKAELTSSA-----PACYALAISPDSKVCFSCCSDG----NI 165 (337)
T ss_dssp EECTTSSEEEEEE---------SSSEEEEEECCCC--EEEEEEECSS-----SCEEEEEECTTSSEEEEEETTS----CE
T ss_pred EEcCCCCEEEEee---------ccccccccccccccccccccccccc-----cccccccccccccccccccccc----cc
Confidence 3579998875432 23456666663332221 1222221 3467788999999998776543 23
Q ss_pred EEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceee
Q 003886 182 FELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (789)
Q Consensus 182 ~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (789)
.... ..++..+.... ..+.+ ..+.|+|+++.+++...+
T Consensus 166 ~~~~~~~~~~~~~~~~---~~~~v------~~l~~s~~~~~~~~~~~d-------------------------------- 204 (337)
T d1gxra_ 166 AVWDLHNQTLVRQFQG---HTDGA------SCIDISNDGTKLWTGGLD-------------------------------- 204 (337)
T ss_dssp EEEETTTTEEEEEECC---CSSCE------EEEEECTTSSEEEEEETT--------------------------------
T ss_pred cccccccccccccccc---ccccc------cccccccccccccccccc--------------------------------
Confidence 3333 34433333221 11222 688999999998886432
Q ss_pred CCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEE
Q 003886 261 EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAV 340 (789)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~ 340 (789)
..+.+||+.+++.... ......+..++|+|+++. |+..+ ....++++
T Consensus 205 ------------~~v~i~d~~~~~~~~~--~~~~~~i~~l~~~~~~~~----l~~~~---------------~d~~i~i~ 251 (337)
T d1gxra_ 205 ------------NTVRSWDLREGRQLQQ--HDFTSQIFSLGYCPTGEW----LAVGM---------------ESSNVEVL 251 (337)
T ss_dssp ------------SEEEEEETTTTEEEEE--EECSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEE
T ss_pred ------------ccccccccccceeecc--cccccceEEEEEcccccc----cceec---------------cccccccc
Confidence 5688899988876544 233445678899999987 66554 22368888
Q ss_pred ecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcc
Q 003886 341 RVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSL 420 (789)
Q Consensus 341 d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t 420 (789)
|+ .++.......+...+...+|||||++|+..+.+ ..|++||+.++......
T Consensus 252 d~-----------------~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~D-----------g~i~iwd~~~~~~~~~~ 303 (337)
T d1gxra_ 252 HV-----------------NKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD-----------NLLNAWRTPYGASIFQS 303 (337)
T ss_dssp ET-----------------TSSCEEEECCCSSCEEEEEECTTSSEEEEEETT-----------SEEEEEETTTCCEEEEE
T ss_pred cc-----------------cccccccccccccccceEEECCCCCEEEEEeCC-----------CeEEEEECCCCCEEEEc
Confidence 87 555555666666778899999999988866643 25899998876542111
Q ss_pred cceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 421 EKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 421 ~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
.. ...+..+.|+|||+.| +++..++...||.+
T Consensus 304 ~~--------------------~~~v~~~~~s~d~~~l-~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 304 KE--------------------SSSVLSCDISVDDKYI-VTGSGDKKATVYEV 335 (337)
T ss_dssp EC--------------------SSCEEEEEECTTSCEE-EEEETTSCEEEEEE
T ss_pred cC--------------------CCCEEEEEEeCCCCEE-EEEeCCCeEEEEEE
Confidence 10 0124466899999865 55666777777754
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.26 E-value=3.4e-10 Score=116.61 Aligned_cols=238 Identities=12% Similarity=0.059 Sum_probs=141.6
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
....+++|+|+.|||.... .++... ...+..+++.. ..+.| ..++|||||++||..+.+
T Consensus 20 ~~~~a~~~~g~~l~~~~~~-----~v~i~~~~~~~~~~~~~~---H~~~v------~~~~~sp~g~~latg~~d------ 79 (311)
T d1nr0a1 20 AVVLGNTPAGDKIQYCNGT-----SVYTVPVGSLTDTEIYTE---HSHQT------TVAKTSPSGYYCASGDVH------ 79 (311)
T ss_dssp CCCCEECTTSSEEEEEETT-----EEEEEETTCSSCCEEECC---CSSCE------EEEEECTTSSEEEEEETT------
T ss_pred eEEEEEcCCCCEEEEEeCC-----EEEEEECCCCceeEEEcC---CCCCE------EEEEEeCCCCeEeccccC------
Confidence 4467899999999997543 244333 34444444421 12223 799999999999876443
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceE---eccCCCCCCccceEEEeeCCCCCcc
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ---AVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~---~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
..|.+||+.+++.. .+. .....+..+.|+|||+.
T Consensus 80 --------------------------------------g~i~iwd~~~~~~~~~~~~~--~~~~~v~~v~~s~d~~~--- 116 (311)
T d1nr0a1 80 --------------------------------------GNVRIWDTTQTTHILKTTIP--VFSGPVKDISWDSESKR--- 116 (311)
T ss_dssp --------------------------------------SEEEEEESSSTTCCEEEEEE--CSSSCEEEEEECTTSCE---
T ss_pred --------------------------------------ceEeeeeeeccccccccccc--cccCccccccccccccc---
Confidence 57889998877532 221 22345778999999997
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEec
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
|+..+... ...+.++++. .......+..+...+...+|+|||+.++....
T Consensus 117 -l~~~~~~~-------------~~~~~v~~~~----------------~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs 166 (311)
T d1nr0a1 117 -IAAVGEGR-------------ERFGHVFLFD----------------TGTSNGNLTGQARAMNSVDFKPSRPFRIISGS 166 (311)
T ss_dssp -EEEEECCS-------------SCSEEEEETT----------------TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEE
T ss_pred -cccccccc-------------cccccccccc----------------cccccccccccccccccccccccceeeecccc
Confidence 77766321 1234455551 22344566666667788899999997544332
Q ss_pred CCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 392 ~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
.+ ..|++||+.++........ +...+..+.|+||++.|+ ++..++.. .
T Consensus 167 ~d----------~~i~i~d~~~~~~~~~~~~-------------------~~~~i~~v~~~p~~~~l~-~~~~d~~v--~ 214 (311)
T d1nr0a1 167 DD----------NTVAIFEGPPFKFKSTFGE-------------------HTKFVHSVRYNPDGSLFA-STGGDGTI--V 214 (311)
T ss_dssp TT----------SCEEEEETTTBEEEEEECC-------------------CSSCEEEEEECTTSSEEE-EEETTSCE--E
T ss_pred cc----------ccccccccccccccccccc-------------------ccccccccccCccccccc-cccccccc--c
Confidence 22 2588999876443211100 001234668999998654 44445544 4
Q ss_pred EEECCCCcEEEecCCC--------CCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 472 SVNVSSGELLRITPAE--------SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 472 ~~dl~tg~~~~lt~~~--------~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
.+|+.+++........ ..+....|+++++.|+... ... .|.+.|..+
T Consensus 215 ~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs-~Dg---~v~iwd~~t 269 (311)
T d1nr0a1 215 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS-ADK---TIKIWNVAT 269 (311)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE-TTS---EEEEEETTT
T ss_pred ccccccccccccccccccccccccccccccccCCCCCEEEEEe-CCC---eEEEEECCC
Confidence 4577676655433211 1234457888888766433 332 366666543
|
| >d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical protein VC1974 domain: Hypothetical protein VC1974 species: Vibrio cholerae [TaxId: 666]
Probab=99.25 E-value=3.8e-12 Score=126.40 Aligned_cols=105 Identities=20% Similarity=0.269 Sum_probs=72.9
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCC
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (789)
+....|+||++||.+++ ...|......|++.||.|+++|+|| +|.+.... ... ..+...+...+.....
T Consensus 12 ~~~~~P~ivllHG~~~~--~~~~~~~~~~L~~~g~~vi~~Dl~G---~G~s~~~~---~~~---~~~~~~~~~~~~~~~~ 80 (264)
T d1r3da_ 12 PTARTPLVVLVHGLLGS--GADWQPVLSHLARTQCAALTLDLPG---HGTNPERH---CDN---FAEAVEMIEQTVQAHV 80 (264)
T ss_dssp CBTTBCEEEEECCTTCC--GGGGHHHHHHHTTSSCEEEEECCTT---CSSCC-------------CHHHHHHHHHHHTTC
T ss_pred CCCCCCeEEEeCCCCCC--HHHHHHHHHHHHhCCCEEEEEeccc---cccccccc---ccc---cchhhhhhhhcccccc
Confidence 34567899999997764 5678888899999999999999998 55443211 111 1122222222222333
Q ss_pred CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeC
Q 003886 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARN 703 (789)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~ 703 (789)
...+++.++|||+||.+++.++.++|+.+..++...
T Consensus 81 ~~~~~~~lvGhS~Gg~ia~~~a~~~~~~~~~~~~~~ 116 (264)
T d1r3da_ 81 TSEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAI 116 (264)
T ss_dssp CTTSEEEEEEETHHHHHHHHHHHHTTTTTSEEEEEE
T ss_pred cccCceeeeeecchHHHHHHHHHhCchhcccccccc
Confidence 466789999999999999999999998888776554
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.25 E-value=3.1e-10 Score=119.98 Aligned_cols=258 Identities=11% Similarity=0.074 Sum_probs=138.6
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCCCC-ccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENEN-SVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
+||||+.+++.. ..+.|.++++.++.-. ...|..+. +.+...+|||||++|+..+.+. ..
T Consensus 15 ~s~dg~~la~~~---------~~~~i~iw~~~~~~~~~~~~l~gH~-----~~V~~l~fsp~~~~l~s~s~D~-----~i 75 (371)
T d1k8kc_ 15 WNKDRTQIAICP---------NNHEVHIYEKSGNKWVQVHELKEHN-----GQVTGVDWAPDSNRIVTCGTDR-----NA 75 (371)
T ss_dssp ECTTSSEEEEEC---------SSSEEEEEEEETTEEEEEEEEECCS-----SCEEEEEEETTTTEEEEEETTS-----CE
T ss_pred ECCCCCEEEEEe---------CCCEEEEEECCCCCEEEEEEecCCC-----CCEEEEEECCCCCEEEEEECCC-----eE
Confidence 469999887642 2235566665332111 12222222 4588999999999998876542 34
Q ss_pred EEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceee
Q 003886 183 ELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWE 260 (789)
Q Consensus 183 ~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (789)
.+| ..++..+..... ...+.+ ..+.|+||++.|+..+.+
T Consensus 76 ~vWd~~~~~~~~~~~~~-~~~~~v------~~i~~~p~~~~l~~~s~d-------------------------------- 116 (371)
T d1k8kc_ 76 YVWTLKGRTWKPTLVIL-RINRAA------RCVRWAPNEKKFAVGSGS-------------------------------- 116 (371)
T ss_dssp EEEEEETTEEEEEEECC-CCSSCE------EEEEECTTSSEEEEEETT--------------------------------
T ss_pred EEEeecccccccccccc-cccccc------cccccccccccceeeccc--------------------------------
Confidence 555 233434443332 222233 789999999998876543
Q ss_pred CCcccccCCccCceEEEEEccCCceE--ec-cCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcce
Q 003886 261 EDWGETYAGKRQPSLFVININSGEVQ--AV-KGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCAL 337 (789)
Q Consensus 261 ~d~g~~~~~~~~~~l~v~d~~~g~~~--~l-~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l 337 (789)
..|.+|+++.+... .. ........+..+.|+|||+. |+..+.+ ..|
T Consensus 117 ------------~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~----l~s~s~D---------------~~v 165 (371)
T d1k8kc_ 117 ------------RVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL----LAAGSCD---------------FKC 165 (371)
T ss_dssp ------------SSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE----EEEEETT---------------SCE
T ss_pred ------------Ccceeeeeecccccccccccccccccccccccccccccc----eeccccC---------------cEE
Confidence 23445554443211 11 00122335678999999997 7665521 245
Q ss_pred EEEecccccchhhhh-hhhcCCCCCC-CeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCC
Q 003886 338 YAVRVSLYKSEASEL-ELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 338 ~~~d~~~~~~~~~~~-~~~~~~~~~~-~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
.++++.......... .........+ .......+.+.+...+|||||++|+..+.+. .|.+||+.++.
T Consensus 166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~-----------~i~iwd~~~~~ 234 (371)
T d1k8kc_ 166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS-----------TVCLADADKKM 234 (371)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTT-----------EEEEEEGGGTT
T ss_pred EEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCC-----------cceEEeeeccc
Confidence 555542110000000 0000000111 1223344455677889999999998877543 58999987644
Q ss_pred CCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE
Q 003886 416 NFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR 482 (789)
Q Consensus 416 ~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~ 482 (789)
... .+... ...+..+.|+|||+ ++.. ..++...+|.++..++....
T Consensus 235 ~~~---------~~~~~----------~~~v~s~~fs~d~~-~la~-g~d~~~~~~~~~~~~~~~~~ 280 (371)
T d1k8kc_ 235 AVA---------TLASE----------TLPLLAVTFITESS-LVAA-GHDCFPVLFTYDSAAGKLSF 280 (371)
T ss_dssp EEE---------EEECS----------SCCEEEEEEEETTE-EEEE-ETTSSCEEEEEETTTTEEEE
T ss_pred cee---------eeecc----------cccceeeeecCCCC-EEEE-EcCCceEEEEeeCCCceEEE
Confidence 321 00000 01234678999996 4343 33566678888876555543
|
| >d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Carboxylesterase/thioesterase 1 domain: Carboxylesterase species: Pseudomonas fluorescens [TaxId: 294]
Probab=99.25 E-value=1.6e-11 Score=119.59 Aligned_cols=159 Identities=14% Similarity=0.115 Sum_probs=95.6
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHHHHHHHHHC--CcEEEEEcCCC-----CCCC-CchhhccC-CCCCCcccHHHHHHH-
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRG-----SLGF-GEEALQSL-PGKVGSQDVNDVLTA- 658 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~--Gy~V~~~d~rG-----s~G~-G~~~~~~~-~~~~~~~~~~D~~~~- 658 (789)
....|+||++||.+.+ ...|....+.|... ++.+++++-+. ..++ +..|.... .......+.+++.+.
T Consensus 11 ~~~~~~Vi~lHG~G~~--~~~~~~~~~~l~~~~~~~~~i~p~ap~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 88 (218)
T d1auoa_ 11 KPADACVIWLHGLGAD--RYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVSA 88 (218)
T ss_dssp SCCSEEEEEECCTTCC--TTTTHHHHHHHHTTCTTEEEEECCCCEEEEGGGTTEEEECSSCEEECSSSCEECHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCC--hhhHHHHHHHHHHhCCCcEEEccCCCccccccCCCcccCcccccccccccccchHHHHHHHH
Confidence 3467899999996543 45666666666654 45666655320 0111 11111110 011112223333333
Q ss_pred --HHHHHH---cCCCCCccEEEEEcCccHHHHHHHHH-hCCCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCcccc
Q 003886 659 --IDHVID---MGLANPSKVTVVGGSHGGFLTTHLIG-QAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKD 732 (789)
Q Consensus 659 --i~~l~~---~~~~d~~rv~l~G~S~GG~~a~~~~~-~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (789)
++.+++ +..+|.+|++++|+|+||++++.++. +.+..++++|+.++...... ..
T Consensus 89 ~~v~~li~~~~~~~i~~~ri~l~GfSqGg~~a~~~~l~~~~~~~~~~v~~~g~~~~~~-------------~~------- 148 (218)
T d1auoa_ 89 KMVTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTAFINWQGPLGGVIALSTYAPTFG-------------DE------- 148 (218)
T ss_dssp HHHHHHHHHHHHTTCCGGGEEEEEETHHHHHHHHHHHTTCCSCCCEEEEESCCCTTCC-------------TT-------
T ss_pred HHHHHHHHHHHHhCCCCcceEEeeeCcchHHHHHHHHhcccccceeeeeccccCcccc-------------cc-------
Confidence 333322 23489999999999999999998765 45678999999887432100 00
Q ss_pred ccCCCCChhhHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 733 SFTESPSVEDLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 733 ~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
..... ...++|+|++||++|.+||+++++++++.|+.
T Consensus 149 ----~~~~~--------------~~~~~pvl~~hG~~D~vvp~~~~~~~~~~L~~ 185 (218)
T d1auoa_ 149 ----LELSA--------------SQQRIPALCLHGQYDDVVQNAMGRSAFEHLKS 185 (218)
T ss_dssp ----CCCCH--------------HHHTCCEEEEEETTCSSSCHHHHHHHHHHHHT
T ss_pred ----cccch--------------hccCCCEEEEecCCCCccCHHHHHHHHHHHHH
Confidence 00000 01256999999999999999999999998865
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.24 E-value=2.3e-10 Score=120.97 Aligned_cols=254 Identities=11% Similarity=0.059 Sum_probs=141.4
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
+...+|||||+.||+....+ .+.+| .+++...+..+. +..+.| ..+.|||||++|+..+.+
T Consensus 10 It~~~~s~dg~~la~~~~~~-----~i~iw~~~~~~~~~~~~l~-gH~~~V------~~l~fsp~~~~l~s~s~D----- 72 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPNNH-----EVHIYEKSGNKWVQVHELK-EHNGQV------TGVDWAPDSNRIVTCGTD----- 72 (371)
T ss_dssp CCEEEECTTSSEEEEECSSS-----EEEEEEEETTEEEEEEEEE-CCSSCE------EEEEEETTTTEEEEEETT-----
T ss_pred eEEEEECCCCCEEEEEeCCC-----EEEEEECCCCCEEEEEEec-CCCCCE------EEEEECCCCCEEEEEECC-----
Confidence 77889999999999875543 45566 334444444332 223344 789999999998876432
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCC-CCCCccceEEEeeCCCCCccE
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI-PKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~-~~~~~~~~~~wSPDg~~~~~~ 312 (789)
..|.+||+.+++....... .....+..+.|+||++.
T Consensus 73 ---------------------------------------~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~---- 109 (371)
T d1k8kc_ 73 ---------------------------------------RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK---- 109 (371)
T ss_dssp ---------------------------------------SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSE----
T ss_pred ---------------------------------------CeEEEEeeccccccccccccccccccccccccccccc----
Confidence 4688999988765433112 22346778999999997
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC---eeecCCCCCccCcceecCCCCEEEEE
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP---VVNLTESISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~Lt~~~~~~~~p~~SpDG~~la~~ 389 (789)
|+..+.. +...+|.++. .... ......+...+...+|+|||+.|+..
T Consensus 110 l~~~s~d-------------~~i~i~~~~~-----------------~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~ 159 (371)
T d1k8kc_ 110 FAVGSGS-------------RVISICYFEQ-----------------ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159 (371)
T ss_dssp EEEEETT-------------SSEEEEEEET-----------------TTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred ceeeccc-------------Ccceeeeeec-----------------ccccccccccccccccccccccccccccceecc
Confidence 7766521 1223444442 1111 11223334557788999999999877
Q ss_pred ecCCCCCCCCccccceeEEeecCCCCCCCcccce-ee-EEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCe
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKI-VD-VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 467 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~-~~-v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 467 (789)
+.+. .+.+||............. .. ......... ... .....+..+.|+|||+.|+. ...++.
T Consensus 160 s~D~-----------~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~v~~~~~s~~g~~l~s-~~~d~~ 224 (371)
T d1k8kc_ 160 SCDF-----------KCRIFSAYIKEVEERPAPTPWGSKMPFGELMF--ESS-SSCGWVHGVCFSANGSRVAW-VSHDST 224 (371)
T ss_dssp ETTS-----------CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE--ECC-CCSSCEEEEEECSSSSEEEE-EETTTE
T ss_pred ccCc-----------EEEEEeeccCccccccccccccccccceeeee--ecc-CccCcEEEEEeecccccccc-cccCCc
Confidence 6543 4777876554322110000 00 000000000 000 01112346789999997654 444554
Q ss_pred EEEEEEECCCCcEEE-ecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEe
Q 003886 468 QVIISVNVSSGELLR-ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGY 519 (789)
Q Consensus 468 ~~l~~~dl~tg~~~~-lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~ 519 (789)
|..+|+.+++... +......+....|++++..+ +..+ +.-..++..+
T Consensus 225 --i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~l-a~g~--d~~~~~~~~~ 272 (371)
T d1k8kc_ 225 --VCLADADKKMAVATLASETLPLLAVTFITESSLV-AAGH--DCFPVLFTYD 272 (371)
T ss_dssp --EEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEE-EEET--TSSCEEEEEE
T ss_pred --ceEEeeecccceeeeecccccceeeeecCCCCEE-EEEc--CCceEEEEee
Confidence 5555776766544 33333344556788887544 3333 2333455554
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.24 E-value=2.2e-10 Score=116.68 Aligned_cols=264 Identities=14% Similarity=0.149 Sum_probs=140.3
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
..+...+|||||++||..+.++ ...+|+ .++..+. ......+.| ..+.|+|||+.++ ++.+...
T Consensus 13 ~~V~~l~~s~dg~~l~s~s~Dg-----~v~vWd~~~~~~~~~--~~~~h~~~v------~~v~~~~~g~~~~-~~~d~~v 78 (299)
T d1nr0a2 13 KAITALSSSADGKTLFSADAEG-----HINSWDISTGISNRV--FPDVHATMI------TGIKTTSKGDLFT-VSWDDHL 78 (299)
T ss_dssp SCEEEEEECTTSSEEEEEETTS-----CEEEEETTTCCEEEC--SSCSCSSCE------EEEEECTTSCEEE-EETTTEE
T ss_pred CCcEEEEECCCCCEEEEEcCCC-----eEEEEECCCCcEEEE--EcCCCCCcE------EEEEeeccceeec-ccceeeE
Confidence 4588999999999998766543 466773 3433322 222222233 7899999997544 3333321
Q ss_pred CCCCccCCCCCCC--C-CCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCC
Q 003886 232 SKPTFSLGSTKGG--S-SDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 232 ~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~ 308 (789)
. .|........ . .............|.++ |..+.......+.+|+.. +...+ ........++|+||++.
T Consensus 79 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-g~~~~~~~~~~i~~~~~~--~~~~~---~~~~~~~~~~~s~~~~~ 150 (299)
T d1nr0a2 79 K--VVPAGGSGVDSSKAVANKLSSQPLGLAVSAD-GDIAVAACYKHIAIYSHG--KLTEV---PISYNSSCVALSNDKQF 150 (299)
T ss_dssp E--EECSSSSSSCTTSCCEEECSSCEEEEEECTT-SSCEEEEESSEEEEEETT--EEEEE---ECSSCEEEEEECTTSCE
T ss_pred E--EeccCCccccccccccccccccccccccccc-cccccccccccccccccc--ccccc---ccccccccccccccccc
Confidence 1 2221111110 0 00111112223345555 333334445677777743 33333 12334567899999987
Q ss_pred CccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCee--ecCCCCCccCcceecCCCCEE
Q 003886 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV--NLTESISSAFFPRFSPDGKFL 386 (789)
Q Consensus 309 ~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~Lt~~~~~~~~p~~SpDG~~l 386 (789)
|+..+ .+..|..+|+ .++... ....+...+...+|+|||++|
T Consensus 151 ----l~~g~---------------~dg~i~~~d~-----------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 194 (299)
T d1nr0a2 151 ----VAVGG---------------QDSKVHVYKL-----------------SGASVSEVKTIVHPAEITSVAFSNNGAFL 194 (299)
T ss_dssp ----EEEEE---------------TTSEEEEEEE-----------------ETTEEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred ----ccccc---------------cccccccccc-----------------ccccccccccccccccccccccccccccc
Confidence 66554 2236778887 333332 223345567788999999998
Q ss_pred EEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCC
Q 003886 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGS 466 (789)
Q Consensus 387 a~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~ 466 (789)
+..+.+. .+++||+.++......... .+ ....+..+.|+|||+.| +++..++
T Consensus 195 ~~~~~d~-----------~i~~~~~~~~~~~~~~~~~---------------~~-h~~~v~~l~~s~~~~~l-~sgs~dg 246 (299)
T d1nr0a2 195 VATDQSR-----------KVIPYSVANNFELAHTNSW---------------TF-HTAKVACVSWSPDNVRL-ATGSLDN 246 (299)
T ss_dssp EEEETTS-----------CEEEEEGGGTTEESCCCCC---------------CC-CSSCEEEEEECTTSSEE-EEEETTS
T ss_pred ccccccc-----------ccccccccccccccccccc---------------cc-cccccccccccccccce-EEEcCCC
Confidence 8766442 5899998765432111100 00 01123456899999866 4555556
Q ss_pred eEEEEEEECCCCcEE--EecCCCC-CceeEEeeecCCEEEEE
Q 003886 467 SQVIISVNVSSGELL--RITPAES-NFSWSLLTLDGDNIIAV 505 (789)
Q Consensus 467 ~~~l~~~dl~tg~~~--~lt~~~~-~~~~~~~s~dg~~l~~~ 505 (789)
...|| |+.+++.. .....+. ......++++++.|+..
T Consensus 247 ~i~iw--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~ 286 (299)
T d1nr0a2 247 SVIVW--NMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSA 286 (299)
T ss_dssp CEEEE--ETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEE
T ss_pred EEEEE--ECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEE
Confidence 55554 66555432 2222222 22223456677765543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=1.6e-09 Score=111.70 Aligned_cols=84 Identities=12% Similarity=0.039 Sum_probs=52.0
Q ss_pred cCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCcccc
Q 003886 374 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLS 453 (789)
Q Consensus 374 ~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~ 453 (789)
...+.+||||++++...... ..+.++++........ +...... ...+..+.|+|
T Consensus 232 ~~~~~~s~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~------~~~~~~~----------~~~p~~~a~sp 285 (333)
T d1ri6a_ 232 AADIHITPDGRHLYACDRTA----------SLITVFSVSEDGSVLS------KEGFQPT----------ETQPRGFNVDH 285 (333)
T ss_dssp EEEEEECTTSSEEEEEETTT----------TEEEEEEECTTSCCEE------EEEEEEC----------SSSCCCEEECT
T ss_pred ceeEEEecccCceeeecccC----------CeEEEEEEcCCCCEEE------EEEEeCC----------CCCeeEEEEeC
Confidence 45678999999876555332 2355555544332110 1110000 01234678999
Q ss_pred CCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003886 454 DGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (789)
Q Consensus 454 Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~l 483 (789)
||++||+.....+...+|.+|.++|+++++
T Consensus 286 DGk~l~va~~~~~~v~v~~id~~tG~l~~~ 315 (333)
T d1ri6a_ 286 SGKYLIAAGQKSHHISVYEIVGEQGLLHEK 315 (333)
T ss_dssp TSSEEEEECTTTCEEEEEEEETTTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEEECCCCcEEEE
Confidence 999987765566778999999999988765
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.21 E-value=2.7e-09 Score=112.42 Aligned_cols=281 Identities=6% Similarity=-0.037 Sum_probs=148.1
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCC-----CC
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN-----ES 178 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~-----~~ 178 (789)
.++||++....... .......+|.++. ..++....+... ....++|||||++|++...... ..
T Consensus 27 ~~~~~~~~~v~~~~----~~~g~~~~~~~d~--~~~~~~~~~~~~------~~~~~a~spDg~~i~~~~~~~~~~~~g~~ 94 (368)
T d1mdah_ 27 PGAISRRSHITLPA----YFAGTTENWVSCA--GCGVTLGHSLGA------FLSLAVAGHSGSDFALASTSFARSAKGKR 94 (368)
T ss_dssp CCCCTTEEEEEECT----TTCSSEEEEEEET--TTTEEEEEEEEC------TTCEEEECTTSSCEEEEEEEETTTTSSSE
T ss_pred cCCCCcceeEEeec----cCCCcceEEEEeC--CCCcEEEEEeCC------CCCcceECCCCCEEEEEcccCcccccccc
Confidence 35788876443321 1123457888764 444444333333 2346899999999999764321 11
Q ss_pred CeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCc
Q 003886 179 PIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ 256 (789)
Q Consensus 179 ~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (789)
...+.+| .+++....+..+...... ....-..+.|||||++|++....+
T Consensus 95 d~~v~v~D~~t~~~~~~i~~p~~~~~~--~g~~p~~~a~SpDGk~l~va~~~~--------------------------- 145 (368)
T d1mdah_ 95 TDYVEVFDPVTFLPIADIELPDAPRFS--VGPRVHIIGNCASSACLLFFLFGS--------------------------- 145 (368)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCSCC--BSCCTTSEEECTTSSCEEEEECSS---------------------------
T ss_pred CCeEEEEECCCCcEeeeecCCccceec--ccCCccceEECCCCCEEEEEeCCC---------------------------
Confidence 2234445 455555555543221100 001114789999999998764322
Q ss_pred ceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCC------ccceEEEeeCCCCCccEEEEEeecCCcee------
Q 003886 257 GDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSL------SVGQVVWAPLNEGLHQYLVFVGWSSETRK------ 324 (789)
Q Consensus 257 ~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~------~~~~~~wSPDg~~~~~~l~f~~~~~~~~~------ 324 (789)
..+.+||++++++......+... ....+.+++||+. +++.........
T Consensus 146 ----------------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~----~~~~~~~~~~~~~~~~~~ 205 (368)
T d1mdah_ 146 ----------------SAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASL----AASDLAAAPAAAGIVGAQ 205 (368)
T ss_dssp ----------------SCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSC----EEEECCSSCCCCEECCCC
T ss_pred ----------------CeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCE----EEEEecCCceeeeeeecc
Confidence 45777777777654432122111 2234566777776 555443222110
Q ss_pred ----------------eeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCC-----------C--CCccC
Q 003886 325 ----------------LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-----------S--ISSAF 375 (789)
Q Consensus 325 ----------------~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~-----------~--~~~~~ 375 (789)
.|. ........++.+++ ..+....+.. . .....
T Consensus 206 ~~~~~~~~~~~~~~~~~g~-~~~~~~~~v~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 267 (368)
T d1mdah_ 206 CTGAQNCSSQAAQANYPGM-LVWAVASSILQGDI-----------------PAAGATMKAAIDGNESGRKADNFRSAGFQ 267 (368)
T ss_dssp SCTTSCBCSCCEEETTTTE-EEECBSSCCEEEEC-----------------CSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred cccccccceeecccccCcE-EEEecCCCEEEEee-----------------cCCceEEEeecccccceeeeeeecCCCce
Confidence 000 01122235666665 2222222111 0 11234
Q ss_pred cceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCC
Q 003886 376 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDG 455 (789)
Q Consensus 376 ~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg 455 (789)
..+++|||+.++.......... .....+|+++|..+++........ . ....+.|+|||
T Consensus 268 ~~a~~~~~~~~~v~~~~~~~~~--~~~~~~v~v~D~~t~~~~~~~~~~-~-------------------~~~~~a~spDG 325 (368)
T d1mdah_ 268 MVAKLKNTDGIMILTVEHSRSC--LAAAENTSSVTASVGQTSGPISNG-H-------------------DSDAIIAAQDG 325 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCT--TSCEEEEEEEESSSCCEEECCEEE-E-------------------EECEEEECCSS
T ss_pred eEEEcCCCCEEEEEecCCCcee--ecCCceEEEEECCCCcEeEEecCC-C-------------------ceeEEEECCCC
Confidence 6789999998876654432211 123357999999886542111100 0 12356899999
Q ss_pred CEEEEEEEeCCeEEEEEEECCCCcEEEecCC
Q 003886 456 CTMLLSSIWGSSQVIISVNVSSGELLRITPA 486 (789)
Q Consensus 456 ~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~ 486 (789)
+.++|.+.. +...|+.+|..+|+..+..+.
T Consensus 326 ~~~ly~s~~-~~~~v~v~D~~tgk~~~~i~~ 355 (368)
T d1mdah_ 326 ASDNYANSA-GTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp SCEEEEEET-TTTEEEEEESSSCEEEEECCC
T ss_pred CEEEEEEeC-CCCeEEEEECCCCCEEEEEEC
Confidence 865555443 334688889999988765543
|
| >d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen 85c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.17 E-value=1e-10 Score=118.55 Aligned_cols=190 Identities=13% Similarity=0.071 Sum_probs=110.5
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH---HHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCC--
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGK-- 646 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~-- 646 (789)
-|..+...+. .+++|+|+++||.++......|.. ..+++++.|++|++||... .++...+.......
T Consensus 16 ~~r~i~~~~~-------~~~~p~lyllhG~~g~~d~~~W~~~~~~~~~~~~~~~ivV~P~~~~-~~~~~~~~~~~~~~~~ 87 (280)
T d1dqza_ 16 MGRDIKVQFQ-------GGGPHAVYLLDGLRAQDDYNGWDINTPAFEEYYQSGLSVIMPVGGQ-SSFYTDWYQPSQSNGQ 87 (280)
T ss_dssp TTEEEEEEEE-------CCSSSEEEECCCTTCCSSSCHHHHHSCHHHHHTTSSSEEEEECCCT-TCTTSBCSSSCTTTTC
T ss_pred CCCcceEEee-------CCCCCEEEECCCCCCCCccchhhhcchHHHHHHhCCcEEEEECCCC-CCcCccccCCcccccC
Confidence 3566665542 236799999999665433445543 3457788999999999532 22222222111111
Q ss_pred CCcccHHH--HHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccchhhhhcCCCCCcchhhh
Q 003886 647 VGSQDVND--VLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNLALMVGTTDIPDWCYVE 724 (789)
Q Consensus 647 ~~~~~~~D--~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~ 724 (789)
.+....++ +.+.+.++.++..+|++|++|+|+|+||++|+.++.++|++|+++++.+|..+........ ..... ..
T Consensus 88 ~~~~~~~~~~~~el~~~i~~~~~~d~~r~~i~G~SmGG~~Al~lA~~~Pd~F~av~s~SG~~~~~~~~~~~-~~~~~-~~ 165 (280)
T d1dqza_ 88 NYTYKWETFLTREMPAWLQANKGVSPTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWPT-LIGLA-MN 165 (280)
T ss_dssp CSCCBHHHHHHTHHHHHHHHHHCCCSSSCEEEEETHHHHHHHHHHHHCTTTCSEEEEESCCCCTTSTTHHH-HHHHH-HH
T ss_pred CcchhHHHHHHHHHHHHHHHhcCCCCCceEEEEechHHHHHHHHHHhCcCceeEEEEecCccCcccCcchh-hhhhh-Hh
Confidence 11222332 3446667667666899999999999999999999999999999999999987542110000 00000 00
Q ss_pred hccCccccccCCCCChhhHHHHHhcCccccCCCC---CCCEEEEEeCCCCCCC
Q 003886 725 SYGSKGKDSFTESPSVEDLTRFHSKSPISHISKV---KTPTIFLLGAQDLRVP 774 (789)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i---~~P~Lii~G~~D~~vp 774 (789)
..+......+.+.+ ....+...+|...++++ ..++++.+|..|...+
T Consensus 166 ~~~~~~~~~~~g~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~ 215 (280)
T d1dqza_ 166 DSGGYNANSMWGPS---SDPAWKRNDPMVQIPRLVANNTRIWVYCGNGTPSDL 215 (280)
T ss_dssp HTTSCCHHHHHCST---TSHHHHHTCTTTTHHHHHHHTCEEEEECCCSCCCTT
T ss_pred hccCCCHhhccCCc---chhhhhhcCHHHHHHHhhhcCCeEEEEeCCCCCccc
Confidence 00110001111111 11234566776665544 3578889998887554
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.16 E-value=6.3e-10 Score=117.60 Aligned_cols=264 Identities=15% Similarity=0.063 Sum_probs=136.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCcc---------ccccCCCcccceeecCCCCEE
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVH---------GSVYADGWFEGISWNSDETLI 222 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~---------g~v~~d~~~~~~~wSpDg~~l 222 (789)
+.+...+|||||++||...++ ...+| ..++............ .....+..+..++|||||+.|
T Consensus 63 ~~V~~l~fs~dg~~lasg~d~------~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l 136 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLATGCNK------TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136 (388)
T ss_dssp SCCCEEEECTTSSEEEEECBS------CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CcEEEEEECCCCCEEEEEeCC------eEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence 358899999999999875422 25566 3343333222110000 000012234689999999999
Q ss_pred EEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEE
Q 003886 223 AYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVW 302 (789)
Q Consensus 223 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~w 302 (789)
+..+.+.... .|+............+........|.++......+.....+.+||..+...... ...........|
T Consensus 137 ~s~~~dg~v~--i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~~~~~~ 212 (388)
T d1erja_ 137 ATGAEDRLIR--IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT--LSIEDGVTTVAV 212 (388)
T ss_dssp EEEETTSCEE--EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEE
T ss_pred eecccccccc--cccccccccccccccccccccccccccccccccccccceeeeeeeccccccccc--cccccccccccc
Confidence 9877665322 222211111111112222222334555544444555678899999988766554 222233344555
Q ss_pred ee-CCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eee-------cCCCCCc
Q 003886 303 AP-LNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVN-------LTESISS 373 (789)
Q Consensus 303 SP-Dg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~-------Lt~~~~~ 373 (789)
+| |++. |+..+ .+..|+++++ .++. ... +..+...
T Consensus 213 ~~~~~~~----l~~~~---------------~d~~i~i~~~-----------------~~~~~~~~~~~~~~~~~~h~~~ 256 (388)
T d1erja_ 213 SPGDGKY----IAAGS---------------LDRAVRVWDS-----------------ETGFLVERLDSENESGTGHKDS 256 (388)
T ss_dssp CSTTCCE----EEEEE---------------TTSCEEEEET-----------------TTCCEEEEEC------CCCSSC
T ss_pred cCCCCCe----EEEEc---------------CCCeEEEeec-----------------ccCccceeeccccccccCCCCC
Confidence 55 6664 54443 2235777776 2222 222 2234456
Q ss_pred cCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCccccee--eEEeeeeccCCCCCccccccCCCCCcc
Q 003886 374 AFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV--DVIPVVQCAEGDCFPGLYSSSILSNPW 451 (789)
Q Consensus 374 ~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~--~v~~~~~~~~~~~f~g~~~~~~~~~~w 451 (789)
+....|+|||+.|+..+.+. .|.+||+.++.......... ........ ....+..+.|
T Consensus 257 v~~l~~s~~~~~l~s~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~ 316 (388)
T d1erja_ 257 VYSVVFTRDGQSVVSGSLDR-----------SVKLWNLQNANNKSDSKTPNSGTCEVTYIG---------HKDFVLSVAT 316 (388)
T ss_dssp EEEEEECTTSSEEEEEETTS-----------EEEEEEC---------------CEEEEEEC---------CSSCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCC-----------cEEEEeccCCccccccccccccceeeeccc---------ccceEEEEEE
Confidence 77899999999988766442 58899987655432111110 00000000 0113456789
Q ss_pred ccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC
Q 003886 452 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA 486 (789)
Q Consensus 452 s~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~ 486 (789)
+|||+.| +++..++. |+.+|+.+++.......
T Consensus 317 s~~~~~l-~sg~~dg~--i~vwd~~~~~~~~~l~~ 348 (388)
T d1erja_ 317 TQNDEYI-LSGSKDRG--VLFWDKKSGNPLLMLQG 348 (388)
T ss_dssp CGGGCEE-EEEETTSE--EEEEETTTCCEEEEEEC
T ss_pred CCCCCEE-EEEeCCCE--EEEEECCCCcEEEEEeC
Confidence 9999865 55555554 55568888887654443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.15 E-value=1.8e-09 Score=113.71 Aligned_cols=279 Identities=12% Similarity=-0.016 Sum_probs=156.8
Q ss_pred cEEEEeCCCCCeEEEEec-CCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRN-PENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~-~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
....+.+|||+..+.... ...+..++|.++ .+++....+..... ..+.|||||+.|++......
T Consensus 22 ~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~-----------~~~a~spDg~~i~~~~~~~~--- 87 (368)
T d1mdah_ 22 SCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-----------SLAVAGHSGSDFALASTSFA--- 87 (368)
T ss_dssp CBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-----------CEEEECTTSSCEEEEEEEET---
T ss_pred ccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCC-----------CcceECCCCCEEEEEcccCc---
Confidence 344567899988654432 223556788888 67777666654322 46899999999998754321
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCC------CCccceEEEeeCCC
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPK------SLSVGQVVWAPLNE 307 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~------~~~~~~~~wSPDg~ 307 (789)
....+.....|.+||..++++......+. ......++|||||+
T Consensus 88 -------------------------------~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk 136 (368)
T d1mdah_ 88 -------------------------------RSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136 (368)
T ss_dssp -------------------------------TTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred -------------------------------cccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCC
Confidence 11112345679999999988654311111 11345789999999
Q ss_pred CCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeee-cCCC-------CCccCccee
Q 003886 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVN-LTES-------ISSAFFPRF 379 (789)
Q Consensus 308 ~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-Lt~~-------~~~~~~p~~ 379 (789)
+ |++.... ...++++|+ .+++... +... .+......+
T Consensus 137 ~----l~va~~~--------------~~~v~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 181 (368)
T d1mdah_ 137 C----LLFFLFG--------------SSAAAGLSV-----------------PGASDDQLTKSASCFHIHPGAAATHYLG 181 (368)
T ss_dssp C----EEEEECS--------------SSCEEEEEE-----------------TTTEEEEEEECSSCCCCEEEETTEEECC
T ss_pred E----EEEEeCC--------------CCeEEEEEC-----------------CCCcEeEEeeccCcceEccCCCceEEEE
Confidence 9 8766421 236888887 4443322 2111 122344677
Q ss_pred cCCCCEEEEEecCCCCCC--------CCc-----------------cccceeEEeecCCCCCCCcccceeeEEeeeeccC
Q 003886 380 SPDGKFLVFLSAKSSVDS--------GAH-----------------SATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAE 434 (789)
Q Consensus 380 SpDG~~la~~s~~~~~~~--------g~~-----------------~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~ 434 (789)
|+||+.+++......... ..+ ....+++++++..+....+ .......
T Consensus 182 ~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~--------~~~~~~~ 253 (368)
T d1mdah_ 182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMK--------AAIDGNE 253 (368)
T ss_dssp CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEE--------CCCCSSC
T ss_pred cCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEE--------eeccccc
Confidence 888887766543322100 000 0112344455444332110 0000000
Q ss_pred CCCC-ccccccCCCCCccccCCCEEEEEEEeCC------eEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEe
Q 003886 435 GDCF-PGLYSSSILSNPWLSDGCTMLLSSIWGS------SQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSS 507 (789)
Q Consensus 435 ~~~f-~g~~~~~~~~~~ws~Dg~~l~~~~~~~~------~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~s 507 (789)
.... .+........+.++++++.+|+...... ...|+.+|..+++...............+++||+.++|+..
T Consensus 254 ~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~ 333 (368)
T d1mdah_ 254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANS 333 (368)
T ss_dssp THHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEE
T ss_pred ceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEe
Confidence 0000 0000112345678999998887765442 46799999999986654443333344689999987766665
Q ss_pred CCCCCCeEEEEeecccC
Q 003886 508 SPVDVPQVKYGYFVDKA 524 (789)
Q Consensus 508 s~~~p~~i~~~~~~~~~ 524 (789)
... ..|+++|..+++
T Consensus 334 ~~~--~~v~v~D~~tgk 348 (368)
T d1mdah_ 334 AGT--EVLDIYDAASDQ 348 (368)
T ss_dssp TTT--TEEEEEESSSCE
T ss_pred CCC--CeEEEEECCCCC
Confidence 433 358888876553
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.12 E-value=3.3e-09 Score=107.41 Aligned_cols=268 Identities=12% Similarity=0.066 Sum_probs=148.1
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
+.+...+|||||++||..+.++ .+.+| ..++..+.+.. ..+.| ..+.|+|++..++........
T Consensus 18 ~~I~~l~~sp~~~~l~s~s~Dg-----~i~iWd~~~~~~~~~~~~---h~~~V------~~~~~~~~~~~~~~~~~~~~~ 83 (317)
T d1vyhc1 18 SPVTRVIFHPVFSVMVSASEDA-----TIKVWDYETGDFERTLKG---HTDSV------QDISFDHSGKLLASCSADMTI 83 (317)
T ss_dssp SCEEEEEECSSSSEEEEEESSS-----CEEEEETTTCCCCEEECC---CSSCE------EEEEECTTSSEEEEEETTSCC
T ss_pred CCeEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCCEEEEEeC---CCCcE------EEEeeeccccccccccccccc
Confidence 4588999999999998876543 46677 34555544432 11222 789999999999887655432
Q ss_pred CCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003886 232 SKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
. .+.............+........|.++....++...+..+.+||+.+++..... .........+.|+||++.
T Consensus 84 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--- 157 (317)
T d1vyhc1 84 K--LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF-TGHREWVRMVRPNQDGTL--- 157 (317)
T ss_dssp C--EEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSE---
T ss_pred c--cccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEE-ccCCCcceeeecccCCCE---
Confidence 2 1111111111111122222223445666544555556788999999988754431 223345678899999986
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCC-------
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK------- 384 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~------- 384 (789)
|+..+. +..|+.+++. .......+..+........|+|++.
T Consensus 158 -l~~~~~---------------d~~v~~~~~~----------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 205 (317)
T d1vyhc1 158 -IASCSN---------------DQTVRVWVVA----------------TKECKAELREHRHVVECISWAPESSYSSISEA 205 (317)
T ss_dssp -EEEEET---------------TSCEEEEETT----------------TCCEEEEECCCSSCEEEEEECCSCGGGGGGGC
T ss_pred -EEEEeC---------------CCeEEEEeec----------------cceeeEEEecCCCCceEEEEeeccccceeecc
Confidence 665542 2246666652 1122233433333344445555443
Q ss_pred -------------EEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCcc
Q 003886 385 -------------FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPW 451 (789)
Q Consensus 385 -------------~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~w 451 (789)
.++..+.+ ..+.+||+.++.... .+.. ....+..+.|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~d-----------~~i~~~~~~~~~~~~---------~~~~----------~~~~v~~~~~ 255 (317)
T d1vyhc1 206 TGSETKKSGKPGPFLLSGSRD-----------KTIKMWDVSTGMCLM---------TLVG----------HDNWVRGVLF 255 (317)
T ss_dssp CSCC-------CCEEEEEETT-----------SEEEEEETTTTEEEE---------EEEC----------CSSCEEEEEE
T ss_pred ccceeeeeccCCceeEeccCC-----------CEEEEEECCCCcEEE---------EEeC----------CCCCEEEEEE
Confidence 33322221 357888877644311 0000 0012345689
Q ss_pred ccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCC-CCCceeEEeeecCCEEEEEE
Q 003886 452 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPA-ESNFSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 452 s~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~-~~~~~~~~~s~dg~~l~~~~ 506 (789)
+|+|+.| +++..++. |..+|+.+++....... ...+....|+++++.|+...
T Consensus 256 ~~~~~~l-~s~~~dg~--i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s 308 (317)
T d1vyhc1 256 HSGGKFI-LSCADDKT--LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 308 (317)
T ss_dssp CSSSSCE-EEEETTTE--EEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred CCCCCEE-EEEECCCe--EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 9999855 45555554 45557777765444333 33445567888888766443
|
| >d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida antarctica), form b [TaxId: 34362]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Yeast (Candida antarctica), form b [TaxId: 34362]
Probab=99.09 E-value=4.4e-10 Score=114.04 Aligned_cols=104 Identities=18% Similarity=0.197 Sum_probs=77.3
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (789)
..+.| ||++||...+.....|.....+|+++||.|+.+|++| +|.... ....+++.+.|+++.++ .
T Consensus 29 ~~~~P-VvlvHG~~~~~~~~~~~~~~~~L~~~Gy~v~~~d~~g---~g~~d~--------~~sae~la~~i~~v~~~--~ 94 (317)
T d1tcaa_ 29 SVSKP-ILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPP---FMLNDT--------QVNTEYMVNAITALYAG--S 94 (317)
T ss_dssp SCSSE-EEEECCTTCCHHHHHTTTHHHHHHTTTCEEEEECCTT---TTCSCH--------HHHHHHHHHHHHHHHHH--T
T ss_pred CCCCc-EEEECCCCCCCcchhHHHHHHHHHhCCCeEEEecCCC---CCCCch--------HhHHHHHHHHHHHHHHh--c
Confidence 34456 6778996654322234456789999999999999987 332221 22367888899999887 3
Q ss_pred CCccEEEEEcCccHHHHHHHHHhCC---CceeEEEEeCCcc
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQAP---DKFVAAAARNPLC 706 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~~p---~~~~a~v~~~pv~ 706 (789)
..++|.|+|||+||.++.+++.++| ++++.+|..++..
T Consensus 95 g~~kV~lVGhS~GG~~a~~~l~~~p~~~~~V~~~v~i~~~~ 135 (317)
T d1tcaa_ 95 GNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAPDY 135 (317)
T ss_dssp TSCCEEEEEETHHHHHHHHHHHHCGGGTTTEEEEEEESCCT
T ss_pred cCCceEEEEeCchHHHHHHHHHHCCCcchheeEEEEeCCCC
Confidence 4578999999999999999999887 4688999888754
|
| >d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase A species: Bacillus subtilis [TaxId: 1423]
Probab=99.07 E-value=3.5e-10 Score=106.10 Aligned_cols=136 Identities=18% Similarity=0.144 Sum_probs=94.2
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCCCc
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLANPS 671 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d~~ 671 (789)
.| ||++||.+.+ ...|......|+++||.|+.++++|. +... .......+++.+.++.++++ .+.+
T Consensus 3 ~P-Vv~vHG~~~~--~~~~~~l~~~l~~~g~~~~~~~~~~~---~~~~------~~~~~~~~~l~~~i~~~~~~--~~~~ 68 (179)
T d1ispa_ 3 NP-VVMVHGIGGA--SFNFAGIKSYLVSQGWSRDKLYAVDF---WDKT------GTNYNNGPVLSRFVQKVLDE--TGAK 68 (179)
T ss_dssp CC-EEEECCTTCC--GGGGHHHHHHHHHTTCCGGGEEECCC---SCTT------CCHHHHHHHHHHHHHHHHHH--HCCS
T ss_pred CC-EEEECCCCCC--HHHHHHHHHHHHHcCCeEEEEecCCc---cccc------cccchhhhhHHHHHHHHHHh--cCCc
Confidence 35 5678997654 56788888999999999999998763 2211 01122356677777777765 3567
Q ss_pred cEEEEEcCccHHHHHHHHHhC--CCceeEEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhc
Q 003886 672 KVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSK 749 (789)
Q Consensus 672 rv~l~G~S~GG~~a~~~~~~~--p~~~~a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 749 (789)
++.|+||||||.++..++.++ +++++.+|+.++....... . ..+
T Consensus 69 ~v~lvGHSmGG~va~~~~~~~~~~~~V~~~V~l~~p~~g~~~--------------------~---~l~----------- 114 (179)
T d1ispa_ 69 KVDIVAHSMGGANTLYYIKNLDGGNKVANVVTLGGANRLTTG--------------------K---ALP----------- 114 (179)
T ss_dssp CEEEEEETHHHHHHHHHHHHSSGGGTEEEEEEESCCGGGTCS--------------------B---CCC-----------
T ss_pred eEEEEeecCcCHHHHHHHHHcCCchhhCEEEEECCCCCCchh--------------------h---hcC-----------
Confidence 899999999999999998776 5789999988764321100 0 000
Q ss_pred CccccCCCCCCCEEEEEeCCCCCCChHHH
Q 003886 750 SPISHISKVKTPTIFLLGAQDLRVPVSNG 778 (789)
Q Consensus 750 sp~~~~~~i~~P~Lii~G~~D~~vp~~~~ 778 (789)
........|++.++|..|.+|++..+
T Consensus 115 ---~~~~~~~~~~~~i~~~~D~~v~~~~~ 140 (179)
T d1ispa_ 115 ---GTDPNQKILYTSIYSSADMIVMNYLS 140 (179)
T ss_dssp ---CSCTTCCCEEEEEEETTCSSSCHHHH
T ss_pred ---CcccccCceEEEEEecCCcccCchhh
Confidence 00123357899999999999998754
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.06 E-value=7e-09 Score=106.57 Aligned_cols=268 Identities=12% Similarity=0.078 Sum_probs=140.3
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSP 231 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~ 231 (789)
+.+...+|||||++||..+.++ .+.+|+ .++....+... .+.| ..++|+|||+.|+..+.+...
T Consensus 56 ~~I~~l~~s~~~~~l~sgs~Dg-----~v~iWd~~~~~~~~~~~~~---~~~v------~~v~~~~~~~~l~~~~~d~~i 121 (340)
T d1tbga_ 56 AKIYAMHWGTDSRLLVSASQDG-----KLIIWDSYTTNKVHAIPLR---SSWV------MTCAYAPSGNYVACGGLDNIC 121 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTT-----EEEEEETTTTEEEEEEECS---CSCE------EEEEECTTSSEEEEEETTCCE
T ss_pred CCEEEEEECCCCCEEEEEECCC-----ceeeeecccceeEEEEecc---cccE------EeeEeeccceeeeeeccccee
Confidence 4588999999999999876654 577883 44444433321 1222 789999999999988766532
Q ss_pred CCCCccCCCCCCCCC----CcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003886 232 SKPTFSLGSTKGGSS----DKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (789)
Q Consensus 232 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (789)
.. |.......... ...+...........+ ..............+........... ......+....+.+++.
T Consensus 122 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 197 (340)
T d1tbga_ 122 SI--YNLKTREGNVRVSRELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIETGQQTTTF-TGHTGDVMSLSLAPDTR 197 (340)
T ss_dssp EE--EESSSSCSCCCEEEEECCCSSCEEEEEEEET-TEEEEEETTTEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSS
T ss_pred ec--ccccccccccccceecccccccccccccccc-cccccccccccccccccccccccccc-cccceeEeeeccccccc
Confidence 21 11100000000 0000000000000000 00001111222333333332222111 11222344556666665
Q ss_pred CCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEE
Q 003886 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 308 ~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la 387 (789)
. +.++. ....|.++|+. .......+..+...+...+|+|||+.|+
T Consensus 198 ~-----~~~~~--------------~d~~v~i~d~~----------------~~~~~~~~~~h~~~i~~v~~~p~~~~l~ 242 (340)
T d1tbga_ 198 L-----FVSGA--------------CDASAKLWDVR----------------EGMCRQTFTGHESDINAICFFPNGNAFA 242 (340)
T ss_dssp E-----EEEEE--------------TTTEEEEEETT----------------TTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred e-----eEEee--------------cCceEEEEECC----------------CCcEEEEEeCCCCCeEEEEECCCCCEEE
Confidence 3 33332 23368888872 2333456666677788899999999988
Q ss_pred EEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCe
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSS 467 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 467 (789)
..+.+. .+.+||+........ ..... ....+..+.|+|+|+.| +++..++.
T Consensus 243 s~s~d~-----------~i~~~~~~~~~~~~~----------~~~~~-------~~~~i~~~~~s~~~~~l-~~g~~dg~ 293 (340)
T d1tbga_ 243 TGSDDA-----------TCRLFDLRADQELMT----------YSHDN-------IICGITSVSFSKSGRLL-LAGYDDFN 293 (340)
T ss_dssp EEETTS-----------CEEEEETTTTEEEEE----------ECCTT-------CCSCEEEEEECSSSCEE-EEEETTSC
T ss_pred EEeCCC-----------eEEEEeecccccccc----------ccccc-------ccCceEEEEECCCCCEE-EEEECCCE
Confidence 776543 488888866433110 00000 00123467899999865 55555555
Q ss_pred EEEEEEECCCCcEEEecCCC-CCceeEEeeecCCEEEEE
Q 003886 468 QVIISVNVSSGELLRITPAE-SNFSWSLLTLDGDNIIAV 505 (789)
Q Consensus 468 ~~l~~~dl~tg~~~~lt~~~-~~~~~~~~s~dg~~l~~~ 505 (789)
|..+|+.+++.......+ ..+....|+++++.|+..
T Consensus 294 --i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~ 330 (340)
T d1tbga_ 294 --CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330 (340)
T ss_dssp --EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred --EEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 455588788776655443 344556788888876543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.06 E-value=3.4e-09 Score=111.80 Aligned_cols=257 Identities=10% Similarity=0.018 Sum_probs=133.0
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
..+...+|||||++|+.....+ .+.+|+......+.... +..+.| ..+.|++++..++..+.+....
T Consensus 122 ~~V~~l~~s~~~~~l~s~~~dg-----~v~i~~~~~~~~~~~~~-~h~~~v------~~~~~~~~~~~~~~~~~~~~i~- 188 (388)
T d1erja_ 122 LYIRSVCFSPDGKFLATGAEDR-----LIRIWDIENRKIVMILQ-GHEQDI------YSLDYFPSGDKLVSGSGDRTVR- 188 (388)
T ss_dssp CBEEEEEECTTSSEEEEEETTS-----CEEEEETTTTEEEEEEC-CCSSCE------EEEEECTTSSEEEEEETTSEEE-
T ss_pred CCEEEEEECCCCCcceeccccc-----ccccccccccccccccc-cccccc------cccccccccccccccccceeee-
Confidence 3477899999999998876553 45666322222222221 122222 6889999999888776544221
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeC-CcccccCCccCceEEEEEccCCceEe-ccC-----CCCCCccceEEEeeCC
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEE-DWGETYAGKRQPSLFVININSGEVQA-VKG-----IPKSLSVGQVVWAPLN 306 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~g~~~~~~~~~~l~v~d~~~g~~~~-l~~-----~~~~~~~~~~~wSPDg 306 (789)
.|+.......... ..........+.+ +....+++..+..|.++|..+++... +.. ......+..+.|+|||
T Consensus 189 -~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 266 (388)
T d1erja_ 189 -IWDLRTGQCSLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG 266 (388)
T ss_dssp -EEETTTTEEEEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS
T ss_pred -eeecccccccccc-ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCC
Confidence 1221100000000 0000111112222 22222234456789999998876533 210 1112356789999999
Q ss_pred CCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEE
Q 003886 307 EGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFL 386 (789)
Q Consensus 307 ~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~l 386 (789)
+. |+..+. +..|.++|+.......... .............+...+...+|||||++|
T Consensus 267 ~~----l~s~~~---------------d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 323 (388)
T d1erja_ 267 QS----VVSGSL---------------DRSVKLWNLQNANNKSDSK----TPNSGTCEVTYIGHKDFVLSVATTQNDEYI 323 (388)
T ss_dssp SE----EEEEET---------------TSEEEEEEC-------------------CEEEEEECCSSCEEEEEECGGGCEE
T ss_pred CE----EEEEEC---------------CCcEEEEeccCCccccccc----cccccceeeecccccceEEEEEECCCCCEE
Confidence 97 765552 2356666663111000000 000111122333445567889999999998
Q ss_pred EEEecCCCCCCCCccccceeEEeecCCCCCCCccccee-eEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeC
Q 003886 387 VFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIV-DVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWG 465 (789)
Q Consensus 387 a~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~-~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~ 465 (789)
+..+.+. .|++||+.+++......+.. .+..+. -.....|+||++ +++++..+
T Consensus 324 ~sg~~dg-----------~i~vwd~~~~~~~~~l~~H~~~V~~~~--------------~~~~~~~spd~~-~l~s~s~D 377 (388)
T d1erja_ 324 LSGSKDR-----------GVLFWDKKSGNPLLMLQGHRNSVISVA--------------VANGSSLGPEYN-VFATGSGD 377 (388)
T ss_dssp EEEETTS-----------EEEEEETTTCCEEEEEECCSSCEEEEE--------------ECSSCTTCTTCE-EEEEEETT
T ss_pred EEEeCCC-----------EEEEEECCCCcEEEEEeCCCCCEEEEE--------------EecCcccCCCCC-EEEEEeCC
Confidence 8766442 59999998765432111111 111110 112456899997 55677778
Q ss_pred CeEEEEEEE
Q 003886 466 SSQVIISVN 474 (789)
Q Consensus 466 ~~~~l~~~d 474 (789)
+...||.+.
T Consensus 378 g~I~iW~~~ 386 (388)
T d1erja_ 378 CKARIWKYK 386 (388)
T ss_dssp SEEEEEEEE
T ss_pred CEEEEEeee
Confidence 888888763
|
| >d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Mycobacterial antigens domain: Antigen pt51/mpb51 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.05 E-value=1.8e-09 Score=108.25 Aligned_cols=124 Identities=17% Similarity=0.194 Sum_probs=87.2
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHH---HHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
.|..+...++.|. .|+|+++||.+++.....|.. ..+.++..+++|+++|--. .++...+.. .+
T Consensus 14 ~~r~~~~~v~~~~-------~pvlylLhG~~g~~~~~~w~~~~~~~~~~~~~~~iVV~p~g~~-~~~y~~~~~-----~~ 80 (267)
T d1r88a_ 14 MGRDIPVAFLAGG-------PHAVYLLDAFNAGPDVSNWVTAGNAMNTLAGKGISVVAPAGGA-YSMYTNWEQ-----DG 80 (267)
T ss_dssp TTEEEEEEEECCS-------SSEEEEECCSSCCSSSCHHHHTSCHHHHHTTSSSEEEEECCCT-TSTTSBCSS-----CT
T ss_pred CCceeeEEEECCC-------CCEEEEcCCCCCCCCcchhhhccHHHHHHhhCCeEEEEECCCC-CcCCccccc-----cc
Confidence 5677887776553 399999999655433334543 3456778999999998521 122222211 12
Q ss_pred cccHHHHH--HHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCccch
Q 003886 649 SQDVNDVL--TAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLCNL 708 (789)
Q Consensus 649 ~~~~~D~~--~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~~~ 708 (789)
....++.+ +.+.++.++..+|++|++|+|+||||++|+.++.++|++|+++++.+|..++
T Consensus 81 ~~~~~tfl~~eL~~~i~~~~~~d~~r~~i~G~SmGG~~Al~la~~~Pd~F~av~~~SG~~~~ 142 (267)
T d1r88a_ 81 SKQWDTFLSAELPDWLAANRGLAPGGHAAVGAAQGGYGAMALAAFHPDRFGFAGSMSGFLYP 142 (267)
T ss_dssp TCBHHHHHHTHHHHHHHHHSCCCSSCEEEEEETHHHHHHHHHHHHCTTTEEEEEEESCCCCT
T ss_pred cccHHHHHHHHHHHHHHHhcCCCCCceEEEEEcchHHHHHHHHHhCcccccEEEEeCCccCC
Confidence 22233322 3566777776689999999999999999999999999999999999998764
|
| >d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=2.4e-10 Score=113.59 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=76.6
Q ss_pred CcEEEEEcCCCCCCCchhhHHHHHHHHHC--CcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCCC
Q 003886 592 DPLIVVLHGGPHSVSLSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLAN 669 (789)
Q Consensus 592 ~P~vv~~HGg~~~~~~~~~~~~~~~la~~--Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~d 669 (789)
+| ||++||.+.+ ...|......|.+. ||.|+++|+|| +|.+... ....++++...+..++++ .+
T Consensus 3 ~P-vvllHG~~~~--~~~~~~~~~~l~~~~~~~~v~~~d~~G---~g~S~~~------~~~~~~~~~~~l~~~l~~--l~ 68 (268)
T d1pjaa_ 3 KP-VIVVHGLFDS--SYSFRHLLEYINETHPGTVVTVLDLFD---GRESLRP------LWEQVQGFREAVVPIMAK--AP 68 (268)
T ss_dssp CC-EEEECCTTCC--GGGGHHHHHHHHHHSTTCCEEECCSSC---SGGGGSC------HHHHHHHHHHHHHHHHHH--CT
T ss_pred CC-EEEECCCCCC--HHHHHHHHHHHHhhCCCeEEEEeCCCC---CCCCCCc------cccCHHHHHHHHHHHHhc--cC
Confidence 35 5678997764 56888888888864 89999999988 6766432 123466666666666665 34
Q ss_pred CccEEEEEcCccHHHHHHHHHhCCC-ceeEEEEeCC
Q 003886 670 PSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNP 704 (789)
Q Consensus 670 ~~rv~l~G~S~GG~~a~~~~~~~p~-~~~a~v~~~p 704 (789)
+++.|+|||+||.+++.+|.++|+ +++.+|+.++
T Consensus 69 -~~~~lvGhS~GG~ia~~~a~~~p~~~v~~lvl~~~ 103 (268)
T d1pjaa_ 69 -QGVHLICYSQGGLVCRALLSVMDDHNVDSFISLSS 103 (268)
T ss_dssp -TCEEEEEETHHHHHHHHHHHHCTTCCEEEEEEESC
T ss_pred -CeEEEEccccHHHHHHHHHHHCCccccceEEEECC
Confidence 899999999999999999999998 6999988876
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.04 E-value=3.3e-08 Score=101.84 Aligned_cols=209 Identities=13% Similarity=0.085 Sum_probs=115.1
Q ss_pred ccEEEEeCC--CCCeEEEEecCCCCCCeEEEEecCCceeEEE-ec---CCCccccccCCCcccceeecCCCCEEEEEeec
Q 003886 155 GASAVVPSP--SGSKLLVVRNPENESPIQFELWSQSQLEKEF-HV---PQTVHGSVYADGWFEGISWNSDETLIAYVAEE 228 (789)
Q Consensus 155 ~~~~~~~SP--dG~~la~~~~~~~~~~~~~~i~~~~~~~~~~-~~---~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~ 228 (789)
.+...+||| ||++||..+..+ .-.+|.+.......... .. -....+.| ..+.|+|||++|+.++..
T Consensus 65 ~v~~v~fsP~~~g~~lasgs~Dg--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v------~~v~~s~~~~~l~~~~~~ 136 (325)
T d1pgua1 65 VVTTVKFSPIKGSQYLCSGDESG--KVIVWGWTFDKESNSVEVNVKSEFQVLAGPI------SDISWDFEGRRLCVVGEG 136 (325)
T ss_dssp CEEEEEECSSTTCCEEEEEETTS--EEEEEEEEEEGGGTEEEEEEEEEEECCSSCE------EEEEECTTSSEEEEEECC
T ss_pred CEEEEEEeeCCCCCEEEEEeCCC--CEEEeeecCCcceeeeecccccccccccCcE------EEEEECCCCCccceeecc
Confidence 477899998 567777655432 22233332222111111 10 01112223 789999999999887653
Q ss_pred CCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCC
Q 003886 229 PSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEG 308 (789)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~ 308 (789)
. ...+.+++.++++..... ......+..+.|+|+++.
T Consensus 137 ~------------------------------------------~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~ 173 (325)
T d1pgua1 137 R------------------------------------------DNFGVFISWDSGNSLGEV-SGHSQRINACHLKQSRPM 173 (325)
T ss_dssp S------------------------------------------SCSEEEEETTTCCEEEEC-CSCSSCEEEEEECSSSSC
T ss_pred c------------------------------------------cceEEEEeecccccceee-eecccccccccccccccc
Confidence 2 234666777777654331 223446778999999998
Q ss_pred CccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eee---cCCCCCccCcceecCCC-
Q 003886 309 LHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVN---LTESISSAFFPRFSPDG- 383 (789)
Q Consensus 309 ~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~---Lt~~~~~~~~p~~SpDG- 383 (789)
++.++.. +..+..+++ ...+ ... ...+...+...+|+||+
T Consensus 174 ----~~~~~~~--------------d~~v~~~d~-----------------~~~~~~~~~~~~~~~~~~v~~v~~~pd~~ 218 (325)
T d1pgua1 174 ----RSMTVGD--------------DGSVVFYQG-----------------PPFKFSASDRTHHKQGSFVRDVEFSPDSG 218 (325)
T ss_dssp ----EEEEEET--------------TTEEEEEET-----------------TTBEEEEEECSSSCTTCCEEEEEECSTTC
T ss_pred ----eEEEeec--------------ccccccccc-----------------cccccceecccccCCCCccEEeeeccccc
Confidence 7766532 225667776 2222 112 22334457788999985
Q ss_pred CEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccc---cCCCEEEE
Q 003886 384 KFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL---SDGCTMLL 460 (789)
Q Consensus 384 ~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws---~Dg~~l~~ 460 (789)
+.|+..+.+ ..|.+||..++.......+. . ..+....|+ +||++| +
T Consensus 219 ~~l~s~~~d-----------~~i~iwd~~~~~~~~~l~~~----------~---------~~v~~~~~s~~~~dg~~l-~ 267 (325)
T d1pgua1 219 EFVITVGSD-----------RKISCFDGKSGEFLKYIEDD----------Q---------EPVQGGIFALSWLDSQKF-A 267 (325)
T ss_dssp CEEEEEETT-----------CCEEEEETTTCCEEEECCBT----------T---------BCCCSCEEEEEESSSSEE-E
T ss_pred eeccccccc-----------cceeeeeecccccccccccc----------c---------cccccceeeeeccCCCEE-E
Confidence 544444433 25889998765432111100 0 012233444 688866 4
Q ss_pred EEEeCCeEEEEEEECCCCcEEE
Q 003886 461 SSIWGSSQVIISVNVSSGELLR 482 (789)
Q Consensus 461 ~~~~~~~~~l~~~dl~tg~~~~ 482 (789)
++..++...| +|+.+++..+
T Consensus 268 s~s~D~~i~i--wd~~~~~~~~ 287 (325)
T d1pgua1 268 TVGADATIRV--WDVTTSKCVQ 287 (325)
T ss_dssp EEETTSEEEE--EETTTTEEEE
T ss_pred EEeCCCeEEE--EECCCCCEEE
Confidence 5555665555 5888887654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.04 E-value=1.6e-08 Score=105.02 Aligned_cols=271 Identities=11% Similarity=0.039 Sum_probs=142.6
Q ss_pred ecCCCCCceEEEEEeech-hhcccceeEEEEEEeecCCCCcc-ceeecCCc--ceecccEEEEeCCCCCeEEEEecCCCC
Q 003886 102 NSGNGNGTQAMFSISQPN-LLANKRKKFMLSTVISKENENSV-TFQWAPFP--VEMTGASAVVPSPSGSKLLVVRNPENE 177 (789)
Q Consensus 102 ~~~spdg~~v~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~-~lt~~~~~--~~~~~~~~~~~SPdG~~la~~~~~~~~ 177 (789)
..+||||+++++...... .........|+++++.+ ++.+ .+...... .........+|||||+++++.....
T Consensus 52 ~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~-- 127 (355)
T d2bbkh_ 52 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT--LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP-- 127 (355)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT--CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS--
T ss_pred eEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC--CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCC--
Confidence 356899999977544321 22233455677777532 2221 11111000 0012234578999999998775432
Q ss_pred CCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCc
Q 003886 178 SPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQ 256 (789)
Q Consensus 178 ~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (789)
...+.... ..++..+.+..+... .++..+....+.+++||+.+++.....
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dg~~~~v~~~~~--------------------------- 178 (355)
T d2bbkh_ 128 APAVGVVDLEGKAFKRMLDVPDCY--HIFPTAPDTFFMHCRDGSLAKVAFGTE--------------------------- 178 (355)
T ss_dssp SCEEEEEETTTTEEEEEEECCSEE--EEEEEETTEEEEEETTSCEEEEECCSS---------------------------
T ss_pred CceeeeeecCCCcEeeEEecCCcc--eEeecCCcceEEEcCCCCEEEEEecCC---------------------------
Confidence 22333333 455555544433221 111122224578899998877653322
Q ss_pred ceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcc
Q 003886 257 GDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCA 336 (789)
Q Consensus 257 ~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~ 336 (789)
..+.+++..+.+. ........+.+++++.. +++.+. ...
T Consensus 179 ----------------~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~----~~~~~~---------------~~~ 217 (355)
T d2bbkh_ 179 ----------------GTPEITHTEVFHP------EDEFLINHPAYSQKAGR----LVWPTY---------------TGK 217 (355)
T ss_dssp ----------------SCCEEEECCCCSC------TTSCBCSCCEEETTTTE----EEEEBT---------------TSE
T ss_pred ----------------CeEEEEecccccc------eecceeeeccccCCCCe----EEEecC---------------CCe
Confidence 2233344333221 11122345677888887 777752 225
Q ss_pred eEEEecccccchhhhhhhhcCCCCCCCeeecCC-------------CCCccCcceecCCCCEEEEEecCCCCCCCCcccc
Q 003886 337 LYAVRVSLYKSEASELELKESSSEDLPVVNLTE-------------SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSAT 403 (789)
Q Consensus 337 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~-------------~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~ 403 (789)
+|++++ .++....+.. ........+++|||+.++.......... .....
T Consensus 218 ~~v~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~ 279 (355)
T d2bbkh_ 218 IHQIDL-----------------SSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR-HKTAS 279 (355)
T ss_dssp EEEEEC-----------------TTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC-TTSCE
T ss_pred EEEEec-----------------CCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCcee-ecCCC
Confidence 677776 2332222111 0122456889999999887765542110 01123
Q ss_pred ceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003886 404 DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (789)
Q Consensus 404 ~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~l 483 (789)
..|+++|..+++..... ..- ..+..+.|+|||+++++.+. .+...|+++|+.+|++.+-
T Consensus 280 ~~v~v~d~~t~~~~~~~-------~~~-------------~~~~~~a~spDG~~~l~v~~-~~d~~i~v~D~~tg~~~~~ 338 (355)
T d2bbkh_ 280 RFVVVLDAKTGERLAKF-------EMG-------------HEIDSINVSQDEKPLLYALS-TGDKTLYIHDAESGEELRS 338 (355)
T ss_dssp EEEEEEETTTCCEEEEE-------EEE-------------EEECEEEECCSSSCEEEEEE-TTTTEEEEEETTTCCEEEE
T ss_pred CeEEEEeCCCCcEEEEe-------cCC-------------CCEEEEEEcCCCCeEEEEEE-CCCCEEEEEECCCCCEEEE
Confidence 57999998876542110 000 01346689999997666543 3335688889999987654
Q ss_pred cC
Q 003886 484 TP 485 (789)
Q Consensus 484 t~ 485 (789)
..
T Consensus 339 i~ 340 (355)
T d2bbkh_ 339 VN 340 (355)
T ss_dssp EC
T ss_pred Ee
Confidence 43
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.03 E-value=4.4e-08 Score=100.30 Aligned_cols=263 Identities=10% Similarity=-0.007 Sum_probs=139.7
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
....+++||||++|+.+...+ ..+..++ ..++............ .......++|||||++++..........
T Consensus 35 ~~~~i~~spDg~~l~v~~~~~---~~v~v~D~~t~~~~~~~~~~~~~~----~~~~~~~v~~s~dg~~l~~~~~~~~~~~ 107 (337)
T d1pbyb_ 35 TPMVPMVAPGGRIAYATVNKS---ESLVKIDLVTGETLGRIDLSTPEE----RVKSLFGAALSPDGKTLAIYESPVRLEL 107 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTT---TEEEEEETTTCCEEEEEECCBTTE----EEECTTCEEECTTSSEEEEEEEEEEECS
T ss_pred CccEEEECCCCCEEEEEECCC---CeEEEEECCCCcEEEEEecCCCcc----cccceeeEEEcCCCcEEEEeecCCccee
Confidence 356789999999987654332 2455555 5666665555432210 0012258999999999987765432110
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (789)
.........+.++|..+++.... ......+..++|+|||+. +
T Consensus 108 --------------------------------~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~s~dg~~----l 149 (337)
T d1pbyb_ 108 --------------------------------THFEVQPTRVALYDAETLSRRKA--FEAPRQITMLAWARDGSK----L 149 (337)
T ss_dssp --------------------------------SCEEECCCEEEEEETTTTEEEEE--EECCSSCCCEEECTTSSC----E
T ss_pred --------------------------------eeccccccceeeccccCCeEEEe--ccccCCceEEEEcCCCCE----E
Confidence 00111346788999999887665 334445678899999998 6
Q ss_pred EEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC-
Q 003886 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK- 392 (789)
Q Consensus 314 ~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~- 392 (789)
+..+. .++.+|. .+++...............++|+|..+......
T Consensus 150 ~~~~~-----------------~~~~~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
T d1pbyb_ 150 YGLGR-----------------DLHVMDP-----------------EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESS 195 (337)
T ss_dssp EEESS-----------------SEEEEET-----------------TTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTT
T ss_pred EEEcC-----------------Ccceeee-----------------ecCcEEEEeecCCccccceecCCcceeecccccc
Confidence 65431 3455565 333322211111222334445555432111100
Q ss_pred ------------CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEE
Q 003886 393 ------------SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLL 460 (789)
Q Consensus 393 ------------~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~ 460 (789)
.............++++|+.++...... ..+ .. .......++++++.++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~--------~~~~~~~~~~~~~~~~~ 257 (337)
T d1pbyb_ 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE-----VRI-----MD--------VFYFSTAVNPAKTRAFG 257 (337)
T ss_dssp TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE-----EEE-----CS--------SCEEEEEECTTSSEEEE
T ss_pred ceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEE-----ecC-----CC--------cceEEEEecccceEEEE
Confidence 0000000111234566666554321100 000 00 01123457788886654
Q ss_pred EEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 461 SSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 461 ~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
. ...|..+|+.+++...............|++||++|+... .. ..|.++|..+.
T Consensus 258 ~-----~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~-~~---~~i~v~D~~t~ 311 (337)
T d1pbyb_ 258 A-----YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGG-AL---GDLAAYDAETL 311 (337)
T ss_dssp E-----ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEES-BS---SEEEEEETTTC
T ss_pred c-----cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEe-CC---CcEEEEECCCC
Confidence 3 2357788999988765544444345578999999886543 22 34888887644
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.00 E-value=1.5e-08 Score=104.44 Aligned_cols=304 Identities=8% Similarity=-0.028 Sum_probs=154.4
Q ss_pred ecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCcc-ceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCe
Q 003886 102 NSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSV-TFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPI 180 (789)
Q Consensus 102 ~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~ 180 (789)
+..|+||++++... ....|.++++.+. +.. .+.... ..+....+|||||++++.....+ ..
T Consensus 2 ~a~~~~~~~l~~~~---------~~~~v~v~D~~t~--~~~~t~~~~~----~~~p~~l~~spDG~~l~v~~~~~---~~ 63 (346)
T d1jmxb_ 2 PALKAGHEYMIVTN---------YPNNLHVVDVASD--TVYKSCVMPD----KFGPGTAMMAPDNRTAYVLNNHY---GD 63 (346)
T ss_dssp CCCCTTCEEEEEEE---------TTTEEEEEETTTT--EEEEEEECSS----CCSSCEEEECTTSSEEEEEETTT---TE
T ss_pred ccCCCCCcEEEEEc---------CCCEEEEEECCCC--CEEEEEEcCC----CCCcceEEECCCCCEEEEEECCC---Cc
Confidence 45789999886643 2236778776332 221 111110 02466889999999987654332 24
Q ss_pred EEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCccee
Q 003886 181 QFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDW 259 (789)
Q Consensus 181 ~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (789)
+..++ ..++............+.. .....+.|||||++++..........
T Consensus 64 v~~~d~~t~~~~~~~~~~~~~~~~~---~~~~~v~~s~DG~~l~v~~~~~~~~~-------------------------- 114 (346)
T d1jmxb_ 64 IYGIDLDTCKNTFHANLSSVPGEVG---RSMYSFAISPDGKEVYATVNPTQRLN-------------------------- 114 (346)
T ss_dssp EEEEETTTTEEEEEEESCCSTTEEE---ECSSCEEECTTSSEEEEEEEEEEECS--------------------------
T ss_pred EEEEeCccCeeeeeecccccccccC---CceEEEEEecCCCEEEEEecCCccee--------------------------
Confidence 55544 4555555444322211000 01157899999999876654321110
Q ss_pred eCCcccccCCccCceEEEEEccCCceEecc-CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceE
Q 003886 260 EEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALY 338 (789)
Q Consensus 260 ~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~ 338 (789)
.........+.+++..+++..... ............+++|++. +..+ ..+.
T Consensus 115 ------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----------------~~~~ 166 (346)
T d1jmxb_ 115 ------DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSL-----YVAG-----------------PDIY 166 (346)
T ss_dssp ------SCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCE-----EEES-----------------SSEE
T ss_pred ------eeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEE-----EEeC-----------------Ccce
Confidence 000113467888998887643321 0111223344566666653 3322 1456
Q ss_pred EEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCC---------------CCcccc
Q 003886 339 AVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDS---------------GAHSAT 403 (789)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~---------------g~~~~~ 403 (789)
.+++ .+++...............++|+|+.++.......... -.....
T Consensus 167 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (346)
T d1jmxb_ 167 KMDV-----------------KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL 229 (346)
T ss_dssp EECT-----------------TTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred EEEc-----------------cCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCC
Confidence 6666 33433322222233566778888876543322210000 000011
Q ss_pred ceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003886 404 DSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (789)
Q Consensus 404 ~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~l 483 (789)
..+.++|+.++....... .+.. ..+....+++++..+++... ..+..+|+.+++..+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~----------~~~~--------~~~~~~~~~~~~~~~~~~~~----~~v~v~d~~~~~~~~~ 287 (346)
T d1jmxb_ 230 YGYLSVDLKTGKTHTQEF----------ADLT--------ELYFTGLRSPKDPNQIYGVL----NRLAKYDLKQRKLIKA 287 (346)
T ss_dssp EEEEEEETTTCCEEEEEE----------EECS--------SCEEEEEECSSCTTEEEEEE----SEEEEEETTTTEEEEE
T ss_pred ceEEEEECCCCceEEEEe----------eccc--------ceeEEEEEeCCCCEEEEecC----CeEEEEECCCCcEEEE
Confidence 234445544433211000 0000 01223456777776665432 2477789999887665
Q ss_pred cCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 484 TPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 484 t~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
...........|++||++++....+ ..|.++|..+.
T Consensus 288 ~~~~~~~~~va~s~DG~~l~v~~~d----~~v~v~D~~t~ 323 (346)
T d1jmxb_ 288 ANLDHTYYCVAFDKKGDKLYLGGTF----NDLAVFNPDTL 323 (346)
T ss_dssp EECSSCCCEEEECSSSSCEEEESBS----SEEEEEETTTT
T ss_pred EcCCCCEEEEEEcCCCCEEEEEeCC----CcEEEEECccC
Confidence 4443334557899999988755332 35888886543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.00 E-value=1.1e-08 Score=103.74 Aligned_cols=158 Identities=15% Similarity=0.119 Sum_probs=102.6
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
.+....|||||+.++..... ...+|..++..+... .... ..++|+||++.|+....
T Consensus 101 ~~~~~~~s~~g~~~~~~~~~------~i~~~~~~~~~~~~~-~~~~----------~~~~~s~~~~~l~~g~~------- 156 (299)
T d1nr0a2 101 QPLGLAVSADGDIAVAACYK------HIAIYSHGKLTEVPI-SYNS----------SCVALSNDKQFVAVGGQ------- 156 (299)
T ss_dssp CEEEEEECTTSSCEEEEESS------EEEEEETTEEEEEEC-SSCE----------EEEEECTTSCEEEEEET-------
T ss_pred cccccccccccccccccccc------ccccccccccccccc-cccc----------ccccccccccccccccc-------
Confidence 46678899999988765443 345665444333221 2222 57899999998887533
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~ 314 (789)
+..|.+||+.+++...+........+..++|+||++. |+
T Consensus 157 -------------------------------------dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----l~ 195 (299)
T d1nr0a2 157 -------------------------------------DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF----LV 195 (299)
T ss_dssp -------------------------------------TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE----EE
T ss_pred -------------------------------------ccccccccccccccccccccccccccccccccccccc----cc
Confidence 2578899998887655421233456778999999987 66
Q ss_pred EEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCC
Q 003886 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSS 394 (789)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~ 394 (789)
..+ ....|+.+|+.... .......+..+...+...+|+|||++|+..+.+.
T Consensus 196 ~~~---------------~d~~i~~~~~~~~~-------------~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg- 246 (299)
T d1nr0a2 196 ATD---------------QSRKVIPYSVANNF-------------ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN- 246 (299)
T ss_dssp EEE---------------TTSCEEEEEGGGTT-------------EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTS-
T ss_pred ccc---------------cccccccccccccc-------------cccccccccccccccccccccccccceEEEcCCC-
Confidence 554 22368888872100 0112233444455677889999999998777543
Q ss_pred CCCCCccccceeEEeecCCCCC
Q 003886 395 VDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 395 ~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
.|++||+.++..
T Consensus 247 ----------~i~iwd~~~~~~ 258 (299)
T d1nr0a2 247 ----------SVIVWNMNKPSD 258 (299)
T ss_dssp ----------CEEEEETTCTTS
T ss_pred ----------EEEEEECCCCCc
Confidence 589999887554
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.99 E-value=3.4e-08 Score=103.49 Aligned_cols=169 Identities=15% Similarity=0.067 Sum_probs=102.8
Q ss_pred cEEEEeCCCCCeEEEEecCC-CCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~-~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
....++||||+++++..... ....++|.++ ..++....+.... . ..+.|||||++|++.......
T Consensus 23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~-~----------~~~a~SpDG~~l~va~~~~~~-- 89 (373)
T d2madh_ 23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF-L----------PNPVAAHSGSEFALASTSFSR-- 89 (373)
T ss_pred ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC-C----------ccEEEcCCCCEEEEEeecCCc--
Confidence 55678999999997654322 1334688887 5666665544321 1 468999999999987654321
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC------CccceEEEeeCCC
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS------LSVGQVVWAPLNE 307 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~------~~~~~~~wSPDg~ 307 (789)
.........|.+||..++++......+.. .....+.|+|||+
T Consensus 90 --------------------------------~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 137 (373)
T d2madh_ 90 --------------------------------IAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA 137 (373)
T ss_pred --------------------------------ccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCC
Confidence 11112456799999999987654211111 1235689999999
Q ss_pred CCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEE
Q 003886 308 GLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLV 387 (789)
Q Consensus 308 ~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la 387 (789)
. +++..+... ..+..++. .+.+.... ........++|||+.++
T Consensus 138 ~----~~v~~~~~~-------------~~~~~~~~-----------------~~~~~~~~---~~~~~~~~~s~~g~~~~ 180 (373)
T d2madh_ 138 D----LLFFQFAAG-------------PAVGLVVQ-----------------GGSSDDQL---LSSPTCYHIHPGAPSTF 180 (373)
T ss_pred c----EEEEEEcCC-------------CceEEeec-----------------cCCeEEEE---eccceeEEEecCCCcEE
Confidence 8 776654322 23445554 33322211 12245678999999875
Q ss_pred EEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
+....+ ..+.++|..++..
T Consensus 181 v~~~~d----------g~~~~~~~~~~~~ 199 (373)
T d2madh_ 181 YLLCAQ----------GGLAKTDHAGGAA 199 (373)
T ss_pred EEEcCC----------CeEEEEEcCCcee
Confidence 554333 3588888776544
|
| >d2vata1 c.69.1.40 (A:7-382) Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG {Acremonium chrysogenum [TaxId: 5044]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Acetyl-CoA:deacetylcephalosporin C acetyltransferase CefG species: Acremonium chrysogenum [TaxId: 5044]
Probab=98.98 E-value=1.4e-09 Score=113.07 Aligned_cols=114 Identities=23% Similarity=0.257 Sum_probs=81.5
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHH-H---HHHHHHCCcEEEEEcCCCCCCCCchhhccCC----------CCCCcccHHH
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSK-S---LAFLSSVGYSLLIVNYRGSLGFGEEALQSLP----------GKVGSQDVND 654 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~-~---~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~----------~~~~~~~~~D 654 (789)
..+.++||+.|+-.++.....|.. . -..+--..|.||++|..|+ |+|.+...... .++....+.|
T Consensus 41 ~~~~NaVlv~h~ltg~~~~~~WW~~liG~g~alDt~kyfVI~~n~lG~-~~gst~p~s~~p~~~~~~~yg~~FP~~ti~D 119 (376)
T d2vata1 41 VSRDNCVIVCHTLTSSAHVTSWWPTLFGQGRAFDTSRYFIICLNYLGS-PFGSAGPCSPDPDAEGQRPYGAKFPRTTIRD 119 (376)
T ss_dssp TTSCCEEEEECCTTCCSCGGGTCGGGBSTTSSBCTTTCEEEEECCTTC-SSSSSSTTSBCTTTC--CBCGGGCCCCCHHH
T ss_pred CCCCCEEEEcCCCcCCccccccHHHhCCCCCccCccceEEEEeccCCC-CcCCCCCCCCCcccccCCcccccCCcchhHH
Confidence 456799999999766655555421 1 1345556799999999984 45543322211 1233456899
Q ss_pred HHHHHHHHHHcCCCCCccE-EEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 655 VLTAIDHVIDMGLANPSKV-TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 655 ~~~~i~~l~~~~~~d~~rv-~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
++++-..|++. +..+++ .|+|+||||+.|+..+.++|++++.+|.+++-
T Consensus 120 ~v~aq~~ll~~--LGI~~l~aViG~SmGGmqal~wa~~~Pd~v~~li~Ia~~ 169 (376)
T d2vata1 120 DVRIHRQVLDR--LGVRQIAAVVGASMGGMHTLEWAFFGPEYVRKIVPIATS 169 (376)
T ss_dssp HHHHHHHHHHH--HTCCCEEEEEEETHHHHHHHHHGGGCTTTBCCEEEESCC
T ss_pred HHHHHHHHHHH--hCcceEEEeecccHHHHHHHHHHHhchHHHhhhcccccc
Confidence 99988877776 455676 68899999999999999999999999888763
|
| >d2b61a1 c.69.1.40 (A:2-358) Homoserine O-acetyltransferase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Haemophilus influenzae [TaxId: 727]
Probab=98.96 E-value=2.1e-09 Score=110.87 Aligned_cols=114 Identities=15% Similarity=0.170 Sum_probs=79.0
Q ss_pred CCCCcEEEEEcCCCCCCCch------hh-HHH---HHHHHHCCcEEEEEcCCCCCCCCchhhccCCC--------CCCcc
Q 003886 589 CSCDPLIVVLHGGPHSVSLS------SY-SKS---LAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG--------KVGSQ 650 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~------~~-~~~---~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~--------~~~~~ 650 (789)
..+.++||+.|+-.++.... .| ... -..+-...|.||++|+.|+ |+|.+....... ++...
T Consensus 36 ~~~~NaVlv~h~~tg~~~~~~~~~~~gWW~~liG~g~alDt~kyfVI~~n~lG~-~~gSs~p~s~~p~tg~~~g~~FP~i 114 (357)
T d2b61a1 36 DEKNNAVLICHALTGDAEPYFDDGRDGWWQNFMGAGLALDTDRYFFISSNVLGG-CKGTTGPSSINPQTGKPYGSQFPNI 114 (357)
T ss_dssp TTCCCEEEEECCTTCCSCSCCSSSCCCTTGGGEETTSSEETTTCEEEEECCTTC-SSSSSCTTSBCTTTSSBCGGGCCCC
T ss_pred CCCCCEEEEcCCCCccccccccCCCCCcHHHhcCCCCccCCCceEEEEecccCC-ccccCCcCCCCCCCCCCCCcccccc
Confidence 34569999999955543221 12 111 1234456699999999984 344333222111 23345
Q ss_pred cHHHHHHHHHHHHHcCCCCCccE-EEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 651 DVNDVLTAIDHVIDMGLANPSKV-TVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 651 ~~~D~~~~i~~l~~~~~~d~~rv-~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
.+.|++++-..|+++ +..+|+ +|+|.||||+.|+..+.++|++++.+|++++-
T Consensus 115 ti~D~v~aq~~Ll~~--LGI~~l~~viG~SmGGmqAl~wa~~~Pd~v~~~i~i~~~ 168 (357)
T d2b61a1 115 VVQDIVKVQKALLEH--LGISHLKAIIGGSFGGMQANQWAIDYPDFMDNIVNLCSS 168 (357)
T ss_dssp CHHHHHHHHHHHHHH--TTCCCEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESCC
T ss_pred hhHHHHHHHHHHHHH--hCcceEEEEecccHHHHHHHHHHHhhhHHHhhhcccccc
Confidence 689999998888876 556788 77899999999999999999999999888763
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.96 E-value=5.6e-07 Score=96.35 Aligned_cols=281 Identities=12% Similarity=0.089 Sum_probs=157.7
Q ss_pred EEEeCCCCCeEEEEecCCC-CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCC
Q 003886 158 AVVPSPSGSKLLVVRNPEN-ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPT 235 (789)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~-~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~ 235 (789)
...+||||+++||..+.++ +...+++++ .+|+..... ++... +..+.|++|++.|+|+..+.......
T Consensus 129 ~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-i~~~~---------~~~~~W~~D~~~~~Y~~~~~~~~~~~ 198 (430)
T d1qfma1 129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LERVK---------FSCMAWTHDGKGMFYNAYPQQDGKSD 198 (430)
T ss_dssp EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EEEEC---------SCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred ceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-ccccc---------ccceEEcCCCCEEEEEEeccccCccc
Confidence 4578999999999876543 455666666 556543322 11111 15789999999999987654321100
Q ss_pred ccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceE--eccCCC-CCCccceEEEeeCCCCCccE
Q 003886 236 FSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQ--AVKGIP-KSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~--~l~~~~-~~~~~~~~~wSPDg~~~~~~ 312 (789)
. ..-.......+++..+.+.... .+.+.. .......+..|+||+.
T Consensus 199 ~----------------------------~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~---- 246 (430)
T d1qfma1 199 G----------------------------TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY---- 246 (430)
T ss_dssp S----------------------------SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE----
T ss_pred c----------------------------cccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcce----
Confidence 0 0000012356888887765332 221111 1223345667899997
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecC
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
++....... .....+|.+|+..... ..........+.......... ...+|..+++.++.
T Consensus 247 l~i~~~~~~----------~~~~~~~~~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Tn~ 306 (430)
T d1qfma1 247 VLLSIREGC----------DPVNRLWYCDLQQESN---------GITGILKWVKLIDNFEGEYDY-VTNEGTVFTFKTNR 306 (430)
T ss_dssp EEEEEECSS----------SSCCEEEEEEGGGSSS---------SSCSSCCCEEEECSSSSCEEE-EEEETTEEEEEECT
T ss_pred eeEEeeccC----------CccEEEEEeeCCCccc---------ccccccceeEeecccccceEE-EecCCceeecccCc
Confidence 666553222 1234688888731000 000001112222221111122 33467778788876
Q ss_pred CCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEE
Q 003886 393 SSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIIS 472 (789)
Q Consensus 393 ~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~ 472 (789)
+. ...+|..+++...... ....+++ .. +.. +..-..+..+..|++....++...|..
T Consensus 307 ~a-------~~~~L~~~~~~~~~~~----~w~~vi~---~~-~~~--------~~~~~~~~~~~~lvl~~~~~~~~~l~v 363 (430)
T d1qfma1 307 HS-------PNYRLINIDFTDPEES----KWKVLVP---EH-EKD--------VLEWVACVRSNFLVLCYLHDVKNTLQL 363 (430)
T ss_dssp TC-------TTCEEEEEETTBCCGG----GCEEEEC---CC-SSC--------EEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred cc-------ccceeEEecCCCCccc----cceEEec---cc-Ccc--------eeeeEEEEECCEEEEEEEcCCEeEEEE
Confidence 52 3457999988654321 1112221 00 000 001122334567888878889999999
Q ss_pred EECCCCcEEEecCCCCCceeEEee--ecCCEEEEEEeCCCCCCeEEEEeecccC
Q 003886 473 VNVSSGELLRITPAESNFSWSLLT--LDGDNIIAVSSSPVDVPQVKYGYFVDKA 524 (789)
Q Consensus 473 ~dl~tg~~~~lt~~~~~~~~~~~s--~dg~~l~~~~ss~~~p~~i~~~~~~~~~ 524 (789)
+++.+++...+..... .+...++ .+.+.+.+.++++.+|+.+|.+|+.+++
T Consensus 364 ~~~~~~~~~~~~~~~~-~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 364 HDLATGALLKIFPLEV-GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp EETTTCCEEEEECCCS-SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EECCCCcEEEecCCCC-ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 9999999888865543 2333343 4667899999999999999999987664
|
| >d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Mammalian carboxylesterase (liver carboxylesterase I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=2.8e-10 Score=126.71 Aligned_cols=132 Identities=23% Similarity=0.262 Sum_probs=94.9
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCC-CCCCCCchhhccCCCCCCc
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYR-GSLGFGEEALQSLPGKVGS 649 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~r-Gs~G~G~~~~~~~~~~~~~ 649 (789)
.|.+.|. ++.|.+....++.|++|+||||...............++..+.+||.+||| |.-||-.......++++
T Consensus 94 EDCL~Ln--I~~P~~~~~~~~lPV~v~ihGG~~~~gs~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~~~~~~gN~-- 169 (532)
T d2h7ca1 94 EDCLYLN--IYTPADLTKKNRLPVMVWIHGGGLMVGAASTYDGLALAAHENVVVVTIQYRLGIWGFFSTGDEHSRGNW-- 169 (532)
T ss_dssp SCCCEEE--EEECSCTTSCCCEEEEEEECCSTTTSCCSTTSCCHHHHHHHTCEEEEECCCCHHHHHCCCSSTTCCCCH--
T ss_pred CcCCEEE--EEECCCCCCCCCcEEEEEEeCCcccccccccCCchhhhhcCceEEEEEeeccCCCcccccccccccccc--
Confidence 4665555 677876666778999999999887544333222234567889999999999 44444322222233344
Q ss_pred ccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHh--CCCceeEEEEeCCccc
Q 003886 650 QDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLCN 707 (789)
Q Consensus 650 ~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~--~p~~~~a~v~~~pv~~ 707 (789)
-+.|+..|++|+.++. .-|+++|.|+|+|.||..+..++.. ...+|+.+|+.++...
T Consensus 170 -Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SG~~~ 231 (532)
T d2h7ca1 170 -GHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVLSPLAKNLFHRAISESGVAL 231 (532)
T ss_dssp -HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTSCSEEEEESCCTT
T ss_pred -ccHHHHHHHHHHHHHHHHhcCCcceeeeeccccccchHHHHHhhhhccCcchhhhhhccccc
Confidence 4889999999999862 2599999999999999988877763 2358999999998653
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.94 E-value=5.7e-08 Score=104.44 Aligned_cols=161 Identities=9% Similarity=0.041 Sum_probs=97.4
Q ss_pred ccEEEEeCCCCCeEEEEecCCCCCCeEEEEe--cCCceeEEEecC--CCccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPENESPIQFELW--SQSQLEKEFHVP--QTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~--~~~~~~~~~~~~--~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
.+...+|||||++|+..+..+ ...+| ..++.....+++ .+.++.+ ..+.|||||++|+.....
T Consensus 63 ~~~~v~fSpDG~~l~~~s~dg-----~v~~~d~~t~~~~~~~~i~~~~~~~~~~------~s~~~SpDG~~l~vs~~~-- 129 (432)
T d1qksa2 63 AVHISRLSASGRYLFVIGRDG-----KVNMIDLWMKEPTTVAEIKIGSEARSIE------TSKMEGWEDKYAIAGAYW-- 129 (432)
T ss_dssp CEEEEEECTTSCEEEEEETTS-----EEEEEETTSSSCCEEEEEECCSEEEEEE------ECCSTTCTTTEEEEEEEE--
T ss_pred CeeEEEECCCCCEEEEEcCCC-----CEEEEEeeCCCceEEEEEecCCCCCCeE------EecccCCCCCEEEEEcCC--
Confidence 467889999999998765432 23344 344444333332 2332333 467899999998765442
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCC----------CCCccceE
Q 003886 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIP----------KSLSVGQV 300 (789)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~----------~~~~~~~~ 300 (789)
...|.+||.+++++....... .......+
T Consensus 130 -----------------------------------------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (432)
T d1qksa2 130 -----------------------------------------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAI 168 (432)
T ss_dssp -----------------------------------------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEE
T ss_pred -----------------------------------------CCeEEEEeCccccceeeeccCCccccceeccCCCceeEE
Confidence 267889999998876542000 01122346
Q ss_pred EEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe---eecCCCCCccCcc
Q 003886 301 VWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV---VNLTESISSAFFP 377 (789)
Q Consensus 301 ~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~Lt~~~~~~~~p 377 (789)
.+||||+. +++.... ...|+.++. .+.+. ..+.. .......
T Consensus 169 ~~s~dg~~----~~vs~~~--------------~~~i~~~d~-----------------~~~~~~~~~~i~~-g~~~~~~ 212 (432)
T d1qksa2 169 LASHYRPE----FIVNVKE--------------TGKILLVDY-----------------TDLNNLKTTEISA-ERFLHDG 212 (432)
T ss_dssp EECSSSSE----EEEEETT--------------TTEEEEEET-----------------TCSSEEEEEEEEC-CSSEEEE
T ss_pred EECCCCCE----EEEEEcc--------------CCeEEEEEc-----------------cCCCcceEEEEcc-cCccccc
Confidence 77888886 5555422 236888886 33332 22222 2235678
Q ss_pred eecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCC
Q 003886 378 RFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 378 ~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
.|||||++++..+... ..+.++|..++.
T Consensus 213 ~~spdg~~~~va~~~~----------~~v~v~d~~~~~ 240 (432)
T d1qksa2 213 GLDGSHRYFITAANAR----------NKLVVIDTKEGK 240 (432)
T ss_dssp EECTTSCEEEEEEGGG----------TEEEEEETTTTE
T ss_pred eECCCCCEEEEecccc----------ceEEEeecccce
Confidence 9999999988777543 468888876643
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.93 E-value=1.2e-08 Score=103.06 Aligned_cols=286 Identities=10% Similarity=0.022 Sum_probs=154.1
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEE
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFE 183 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~ 183 (789)
++|||+.++-. ...+.|.++++.+ +.....+.... ..+....|+|+|..++...... ...
T Consensus 25 ~sp~~~~l~s~---------s~Dg~i~iWd~~~-~~~~~~~~~h~-----~~V~~~~~~~~~~~~~~~~~~~-----~~~ 84 (317)
T d1vyhc1 25 FHPVFSVMVSA---------SEDATIKVWDYET-GDFERTLKGHT-----DSVQDISFDHSGKLLASCSADM-----TIK 84 (317)
T ss_dssp ECSSSSEEEEE---------ESSSCEEEEETTT-CCCCEEECCCS-----SCEEEEEECTTSSEEEEEETTS-----CCC
T ss_pred EcCCCCEEEEE---------eCCCeEEEEECCC-CCEEEEEeCCC-----CcEEEEeeeccccccccccccc-----ccc
Confidence 46888866432 1234566676632 22223333222 4588899999999998876543 122
Q ss_pred EecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCc
Q 003886 184 LWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDW 263 (789)
Q Consensus 184 i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 263 (789)
++........... ..... ......|+|+++.|+....+.... .|.............+........|.++.
T Consensus 85 ~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (317)
T d1vyhc1 85 LWDFQGFECIRTM-HGHDH------NVSSVSIMPNGDHIVSASRDKTIK--MWEVQTGYCVKTFTGHREWVRMVRPNQDG 155 (317)
T ss_dssp EEETTSSCEEECC-CCCSS------CEEEEEECSSSSEEEEEETTSEEE--EEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred ccccccccccccc-ccccc------cceeeeccCCCceEEeeccCccee--EeecccceeeeEEccCCCcceeeecccCC
Confidence 2321111111111 11111 126788999999998776654321 22221111111122223333344566664
Q ss_pred ccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCce----e-eeeeeeccCCcceE
Q 003886 264 GETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETR----K-LGIKYCYNRPCALY 338 (789)
Q Consensus 264 g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~----~-~g~~~~~~~~~~l~ 338 (789)
...+++..+..|.+++..+++..... ......+..+.|+|++.. +.......... . .........+..|+
T Consensus 156 ~~l~~~~~d~~v~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 230 (317)
T d1vyhc1 156 TLIASCSNDQTVRVWVVATKECKAEL-REHRHVVECISWAPESSY----SSISEATGSETKKSGKPGPFLLSGSRDKTIK 230 (317)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECCSCGG----GGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred CEEEEEeCCCeEEEEeeccceeeEEE-ecCCCCceEEEEeecccc----ceeeccccceeeeeccCCceeEeccCCCEEE
Confidence 44445556788999999887765431 223335567788887654 22111000000 0 00001112344677
Q ss_pred EEecccccchhhhhhhhcCCCCCC-CeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCC
Q 003886 339 AVRVSLYKSEASELELKESSSEDL-PVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (789)
Q Consensus 339 ~~d~~~~~~~~~~~~~~~~~~~~~-~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~ 417 (789)
.+++ .++ ....+..+...+....|+|||+.|+..+.+. .|.+||+.+++..
T Consensus 231 ~~~~-----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----------~i~iwd~~~~~~~ 282 (317)
T d1vyhc1 231 MWDV-----------------STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK-----------TLRVWDYKNKRCM 282 (317)
T ss_dssp EEET-----------------TTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTT-----------EEEEECCTTSCCC
T ss_pred EEEC-----------------CCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCC-----------eEEEEECCCCcEE
Confidence 8887 333 3455666666788899999999988766442 5999999876543
Q ss_pred CcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 418 SSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 418 ~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
...... ...+..+.|+||++.| +++..++...||
T Consensus 283 ~~~~~h-------------------~~~V~~~~~s~~~~~l-~s~s~Dg~i~iW 316 (317)
T d1vyhc1 283 KTLNAH-------------------EHFVTSLDFHKTAPYV-VTGSVDQTVKVW 316 (317)
T ss_dssp EEEECC-------------------SSCEEEEEECSSSSCE-EEEETTSEEEEE
T ss_pred EEEcCC-------------------CCCEEEEEEcCCCCEE-EEEeCCCeEEEe
Confidence 211110 1124467899999855 566666766665
|
| >d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Hypothetical esterase YJL068C domain: Hypothetical esterase YJL068C species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.91 E-value=2.1e-09 Score=108.92 Aligned_cols=197 Identities=12% Similarity=0.126 Sum_probs=109.9
Q ss_pred CCeeEEEEEEecCCCC-----CCCCCcEEEEEcCCCCCCCchhhHH---HHHHHHHCCcEEEEEcCCCC----C------
Q 003886 572 AQKPFEAIFVSSSHKK-----DCSCDPLIVVLHGGPHSVSLSSYSK---SLAFLSSVGYSLLIVNYRGS----L------ 633 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~-----~~~~~P~vv~~HGg~~~~~~~~~~~---~~~~la~~Gy~V~~~d~rGs----~------ 633 (789)
-|.+....+|+|+++. +++++|+|+++||.++. ...|.. ....+.+.|.+|+.++.... .
T Consensus 24 l~~~~~~~VyLP~~y~~~~~~~~~~yPVLYlLhG~~~~--~~~w~~~~~~~~~~~~~~~~vv~~~~~p~~~~~~~~~~~~ 101 (299)
T d1pv1a_ 24 TKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCT--PDNASEKAFWQFQADKYGFAIVFPDTSPRGDEVANDPEGS 101 (299)
T ss_dssp SSSEEEEEEEECTTTTSCCCSSCTTBCEEEEECCTTCC--HHHHHHHSCHHHHHHHHTCEEEECCSSCCSTTSCCCTTCC
T ss_pred cCCceEEEEEeCCcccccCcccCCCCCEEEEcCCCCCC--HHHHHHhhhHHHHHHHcCCceecCCCcccccccCCccccc
Confidence 4677888999998773 35679999999996653 445533 23456678999999874211 0
Q ss_pred ---CCCchhhccCCC-------CCCcccHHHHHHHHHHHHHc----CCCCCccEEEEEcCccHHHHHHHHHh--CCCcee
Q 003886 634 ---GFGEEALQSLPG-------KVGSQDVNDVLTAIDHVIDM----GLANPSKVTVVGGSHGGFLTTHLIGQ--APDKFV 697 (789)
Q Consensus 634 ---G~G~~~~~~~~~-------~~~~~~~~D~~~~i~~l~~~----~~~d~~rv~l~G~S~GG~~a~~~~~~--~p~~~~ 697 (789)
|.+..+...... ++...-.+|+...|+..... ...+.++.+|.|+||||+.|+.++.+ +|++|.
T Consensus 102 ~~~g~~~~~y~d~~~~p~~~~~~~~~~i~~EL~p~i~~~~~~~~~r~~~~~~~~~I~G~SmGG~gAl~~al~~~~p~~f~ 181 (299)
T d1pv1a_ 102 WDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGAICGYLKGYSGKRYK 181 (299)
T ss_dssp SSSSSSCCTTCBCCSHHHHTTCBHHHHHHTHHHHHHHHHHCC-----BCSSSSEEEEEETHHHHHHHHHHHHTGGGTCCS
T ss_pred ccccCCCccccccccCCcccccchHHHHHHHHHHHHHHhCCcccccccccccceEEEeecccHHHHHHHHHHhcCCCceE
Confidence 111111111000 00011123344444433211 11234689999999999999999875 489999
Q ss_pred EEEEeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCChhhHHHHHhcCcccc---CCCC-CCCEEEEEeCCCCCC
Q 003886 698 AAAARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPSVEDLTRFHSKSPISH---ISKV-KTPTIFLLGAQDLRV 773 (789)
Q Consensus 698 a~v~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~---~~~i-~~P~Lii~G~~D~~v 773 (789)
++++.+|+.++...... .......++. ....+...++... ..+. ..++++.+|++|...
T Consensus 182 ~~~s~s~~~~~~~~~~~----~~~~~~~~g~-------------~~~~~~~~~~~~l~~~~~~~~~~~i~~~~G~~D~~~ 244 (299)
T d1pv1a_ 182 SCSAFAPIVNPSNVPWG----QKAFKGYLGE-------------EKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFL 244 (299)
T ss_dssp EEEEESCCCCSTTSHHH----HHHHHHHSCC-----------------CGGGCHHHHGGGSCCCTTCCEEEECCTTCTTT
T ss_pred EEeeccCcCCcccccch----hhhhhhhccc-------------chhhhhhcCHHHHHHHhhccCCcceeEecCCCCcch
Confidence 99999998764321000 0000011111 1112233333332 2322 346888899999877
Q ss_pred ChH-HHHHHHHHCCC
Q 003886 774 PVS-NGLQVIYHIPF 787 (789)
Q Consensus 774 p~~-~~~~l~~~l~~ 787 (789)
+.. ....|.+++++
T Consensus 245 ~~~~~~~~f~~~~~~ 259 (299)
T d1pv1a_ 245 EEHLKPELLLEAVKA 259 (299)
T ss_dssp TTTCCTHHHHHHHTT
T ss_pred hhhhcHHHHHHHHHh
Confidence 653 34567776653
|
| >d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes sp. [TaxId: 512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: A novel bacterial esterase domain: A novel bacterial esterase species: Alcaligenes sp. [TaxId: 512]
Probab=98.89 E-value=9.6e-12 Score=128.31 Aligned_cols=100 Identities=10% Similarity=0.043 Sum_probs=61.2
Q ss_pred EEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhH-------HHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCC
Q 003886 576 FEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYS-------KSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVG 648 (789)
Q Consensus 576 l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~-------~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~ 648 (789)
+...++.|. +.++.| ||++||++++. ..|. ...++++++||.|+++|+||.++.+....
T Consensus 46 ~~v~~~~p~---~~~~~P-vvllHG~~~~~--~~w~~~~~~~~~~~~~~~~~Gy~V~~~D~~G~G~S~~~~~-------- 111 (318)
T d1qlwa_ 46 MYVRYQIPQ---RAKRYP-ITLIHGCCLTG--MTWETTPDGRMGWDEYFLRKGYSTYVIDQSGRGRSATDIS-------- 111 (318)
T ss_dssp EEEEEEEET---TCCSSC-EEEECCTTCCG--GGGSSCTTSCCCHHHHHHHTTCCEEEEECTTSTTSCCCCH--------
T ss_pred EEEEEECCC---CCCCCc-EEEECCCCCCc--CccccCcccchhHHHHHHhCCCEEEEecCCCCCCCCCccc--------
Confidence 344456675 445667 56789998863 3332 35789999999999999999555443221
Q ss_pred cccHHHHHHHHHHHHH---cCCCCCccEEEEEcCccHHHHHHHHHhC
Q 003886 649 SQDVNDVLTAIDHVID---MGLANPSKVTVVGGSHGGFLTTHLIGQA 692 (789)
Q Consensus 649 ~~~~~D~~~~i~~l~~---~~~~d~~rv~l~G~S~GG~~a~~~~~~~ 692 (789)
..+.....+++.+ .-.....++.++|||+||.++..++...
T Consensus 112 ---~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~s~G~~~~~~~~~~~ 155 (318)
T d1qlwa_ 112 ---AINAVKLGKAPASSLPDLFAAGHEAAWAIFRFGPRYPDAFKDTQ 155 (318)
T ss_dssp ---HHHHHHTTSSCGGGSCCCBCCCHHHHHHHTTSSSBTTBCCTTCC
T ss_pred ---cCCHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhhc
Confidence 1111222222111 1112345677889999998877766543
|
| >d1llfa_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Candida cylindracea, cholesterol esterase [TaxId: 44322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Candida cylindracea, cholesterol esterase [TaxId: 44322]
Probab=98.89 E-value=9.7e-10 Score=122.13 Aligned_cols=131 Identities=21% Similarity=0.228 Sum_probs=90.7
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchh-h--HHH--HHHHHHCCcEEEEEcCC-CCCCCCch--hhc
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-Y--SKS--LAFLSSVGYSLLIVNYR-GSLGFGEE--ALQ 641 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~-~--~~~--~~~la~~Gy~V~~~d~r-Gs~G~G~~--~~~ 641 (789)
+.|.+.|. ++.|+.....++.|+||+||||........ | ... ...++.++++||.+||| |.-||-.. ...
T Consensus 94 sEDCL~Ln--I~~P~~~~~~~~~PVlv~ihGG~f~~g~~~~~~~~~~~~~~~~~~~~vIvVt~nYRLg~~GFl~~~~~~~ 171 (534)
T d1llfa_ 94 SEDCLTIN--VVRPPGTKAGANLPVMLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWGFLAGDDIKA 171 (534)
T ss_dssp CSCCCEEE--EEECTTCCTTCCEEEEEEECCSTTTSCCGGGSCCHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH
T ss_pred CCcCCEEE--EEECCCCCCCCCCeEEEEECCCccccCCCCCCCchhccchhhhccCCeEEEEeecCCCcccccCCccccc
Confidence 34665554 788876667789999999999886433332 2 122 23456789999999999 43344321 122
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHh-----CC---CceeEEEEeCCc
Q 003886 642 SLPGKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQ-----AP---DKFVAAAARNPL 705 (789)
Q Consensus 642 ~~~~~~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~-----~p---~~~~a~v~~~pv 705 (789)
..++++ -+.|+..|++|+.+.. .-|+++|.|+|+|.||..+..++.. .| .+|+.+|+.+|.
T Consensus 172 ~~~gN~---Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~~~~~~~sp~s~gLF~raI~qSGs 243 (534)
T d1llfa_ 172 EGSGNA---GLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLIWNDGDNTYKGKPLFRAGIMQSGA 243 (534)
T ss_dssp HTCTTH---HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGCCEETTEESCSEEEEESCC
T ss_pred cccccc---chhHHHHHHHHHHhhhhhhccCCcceeeeeecchHHHHHHHHhccccccccchhhhhhhhhhccCc
Confidence 223444 4889999999999863 2699999999999999987755531 11 369999999874
|
| >d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId: 42739]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Chromobacterium viscosum [TaxId: 42739]
Probab=98.89 E-value=2e-09 Score=110.78 Aligned_cols=104 Identities=19% Similarity=0.313 Sum_probs=78.4
Q ss_pred CCCCcEEEEEcCCCCCCCc----hhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHH
Q 003886 589 CSCDPLIVVLHGGPHSVSL----SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 664 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~----~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 664 (789)
..++|+| ++||..+.... ..|......|+++||.|+++|++| +|.+.. .....+++.+.++.+++
T Consensus 6 ~~k~Pvv-lvHG~~g~~~~~~~~~~~~~~~~~L~~~G~~V~~~~~~g---~g~s~~-------~~~~~~~l~~~i~~~~~ 74 (319)
T d1cvla_ 6 ATRYPVI-LVHGLAGTDKFANVVDYWYGIQSDLQSHGAKVYVANLSG---FQSDDG-------PNGRGEQLLAYVKQVLA 74 (319)
T ss_dssp CCSSCEE-EECCTTBSSEETTTEESSTTHHHHHHHTTCCEEECCCBC---SSCTTS-------TTSHHHHHHHHHHHHHH
T ss_pred CCCCCEE-EECCCCCCcchhhhhhhHHHHHHHHHHCCCEEEEecCCC---CCCCCC-------CcccHHHHHHHHHHHHH
Confidence 4567865 68996654221 135667789999999999999987 443321 11235677777777776
Q ss_pred cCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 665 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 665 ~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
. .+.++|.|+|||+||.++..++.++|++++.+|..++.
T Consensus 75 ~--~~~~~v~lvGhS~GG~~~~~~~~~~p~~v~~vv~i~~p 113 (319)
T d1cvla_ 75 A--TGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGTP 113 (319)
T ss_dssp H--HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred H--hCCCCEEEEeccccHHHHHHHHHHCccccceEEEECCC
Confidence 5 35689999999999999999999999999999998874
|
| >d1qo7a_ c.69.1.11 (A:) Bacterial epoxide hydrolase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Epoxide hydrolase domain: Bacterial epoxide hydrolase species: Aspergillus niger [TaxId: 5061]
Probab=98.88 E-value=1.2e-08 Score=108.57 Aligned_cols=120 Identities=15% Similarity=0.123 Sum_probs=94.0
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCC------cEEEEEcCCCCCCCCchhhccCCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVG------YSLLIVNYRGSLGFGEEALQSLPG 645 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~G------y~V~~~d~rGs~G~G~~~~~~~~~ 645 (789)
+|..||.+.+.+ ..+..|.||++||.|++ ...|...+..|++.| |.||++|+|| ||.+... .
T Consensus 90 ~G~~iHf~h~~~----~~~~~~pLlLlHG~P~s--~~~w~~vi~~La~~g~~~~~~f~VIaPDLpG---~G~S~~P---~ 157 (394)
T d1qo7a_ 90 EGLTIHFAALFS----EREDAVPIALLHGWPGS--FVEFYPILQLFREEYTPETLPFHLVVPSLPG---YTFSSGP---P 157 (394)
T ss_dssp TTEEEEEEEECC----SCTTCEEEEEECCSSCC--GGGGHHHHHHHHHHCCTTTCCEEEEEECCTT---STTSCCC---C
T ss_pred CCEEEEEEEEec----cCCCCCEEEEecccccc--HHHHHHHHHhhccccCCcccceeeecccccc---cCCCCCC---C
Confidence 799999776654 34567788999998885 678888999999988 9999999998 7766532 1
Q ss_pred CCCcccHHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 646 KVGSQDVNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
........++.+.+..+++. ...++..++|||+||.++..++..+|+.++++++....
T Consensus 158 ~~~~y~~~~~a~~~~~l~~~--lg~~~~~~vg~~~Gg~v~~~~a~~~p~~~~~~~l~~~~ 215 (394)
T d1qo7a_ 158 LDKDFGLMDNARVVDQLMKD--LGFGSGYIIQGGDIGSFVGRLLGVGFDACKAVHLNLCA 215 (394)
T ss_dssp SSSCCCHHHHHHHHHHHHHH--TTCTTCEEEEECTHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCCccCHHHHHHHHHHHHhh--ccCcceEEEEecCchhHHHHHHHHhhccccceeEeeec
Confidence 22234567777777777776 45678899999999999999999999999888876543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.88 E-value=6.4e-09 Score=112.10 Aligned_cols=190 Identities=11% Similarity=-0.048 Sum_probs=114.2
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
...|.+||.+++++... ++....+..++|||||+. |+..+ +...+.++|+
T Consensus 41 ~g~v~v~D~~t~~v~~~--~~~g~~~~~v~fSpDG~~----l~~~s---------------~dg~v~~~d~--------- 90 (432)
T d1qksa2 41 AGQIALIDGSTYEIKTV--LDTGYAVHISRLSASGRY----LFVIG---------------RDGKVNMIDL--------- 90 (432)
T ss_dssp TTEEEEEETTTCCEEEE--EECSSCEEEEEECTTSCE----EEEEE---------------TTSEEEEEET---------
T ss_pred CCEEEEEECCCCcEEEE--EeCCCCeeEEEECCCCCE----EEEEc---------------CCCCEEEEEe---------
Confidence 36799999999988665 344446789999999997 65443 2336888887
Q ss_pred hhhhcCCCCCCCe---eec---CCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceee
Q 003886 352 LELKESSSEDLPV---VNL---TESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 425 (789)
Q Consensus 352 ~~~~~~~~~~~~~---~~L---t~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~ 425 (789)
.+++. ..+ ..+.+...+|.|||||++|+.....+ ..+.+||..+++..........
T Consensus 91 --------~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~----------~~v~i~d~~t~~~~~~~~~~~~ 152 (432)
T d1qksa2 91 --------WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP----------PQYVIMDGETLEPKKIQSTRGM 152 (432)
T ss_dssp --------TSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET----------TEEEEEETTTCCEEEEEECCEE
T ss_pred --------eCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCC----------CeEEEEeCccccceeeeccCCc
Confidence 33332 222 23344577899999999986544322 3689999988765422211110
Q ss_pred EEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecC--CCCCceeEEeeecCCEEE
Q 003886 426 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITP--AESNFSWSLLTLDGDNII 503 (789)
Q Consensus 426 v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~~~~~s~dg~~l~ 503 (789)
.... ..+. .......+.+++||+.++++.... ..++.+|..+++..++.. .........+++||++++
T Consensus 153 ~~~~------~~~~--~~~~~~~v~~s~dg~~~~vs~~~~--~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~ 222 (432)
T d1qksa2 153 TYDE------QEYH--PEPRVAAILASHYRPEFIVNVKET--GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFI 222 (432)
T ss_dssp CTTT------CCEE--SCCCEEEEEECSSSSEEEEEETTT--TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEE
T ss_pred cccc------eecc--CCCceeEEEECCCCCEEEEEEccC--CeEEEEEccCCCcceEEEEcccCccccceECCCCCEEE
Confidence 0000 0000 000112346789999877765443 357778887766544322 122234568999999888
Q ss_pred EEEeCCCCCCeEEEEeecc
Q 003886 504 AVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 504 ~~~ss~~~p~~i~~~~~~~ 522 (789)
........ +.+++...
T Consensus 223 va~~~~~~---v~v~d~~~ 238 (432)
T d1qksa2 223 TAANARNK---LVVIDTKE 238 (432)
T ss_dssp EEEGGGTE---EEEEETTT
T ss_pred Eeccccce---EEEeeccc
Confidence 87765443 55666543
|
| >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Type-B carboxylesterase/lipase species: Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]
Probab=98.87 E-value=1.2e-09 Score=121.58 Aligned_cols=132 Identities=20% Similarity=0.219 Sum_probs=93.2
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchh-h--HHH-HH-HHHHCCcEEEEEcCC-CCCCCCc--hhhc
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-Y--SKS-LA-FLSSVGYSLLIVNYR-GSLGFGE--EALQ 641 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~-~--~~~-~~-~la~~Gy~V~~~d~r-Gs~G~G~--~~~~ 641 (789)
+.|.+.|. ++.|++....++.|+||+||||........ + ... .. ..+..+++||.+||| |.-||-. +...
T Consensus 102 sEDCL~Ln--I~~P~~~~~~~~lPV~V~ihGG~f~~G~~~~~~~~~~~~~~~~~~~~vIvVt~nYRlg~~Gfl~~~~~~~ 179 (544)
T d1thga_ 102 NEDCLYLN--VFRPAGTKPDAKLPVMVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFGFLGGDAITA 179 (544)
T ss_dssp CSCCCEEE--EEEETTCCTTCCEEEEEEECCCTTCCSGGGGCCSHHHHHHHHHTTCCCEEEEECCCCHHHHHCCSHHHHH
T ss_pred CCcCCEEE--EEECCCCCCCCCCCEEEEeccCCCccCCCccCCcchhhhhhhhccCCeEEEecccccccccccCCchhhc
Confidence 34665555 677877667789999999999887543332 1 222 22 334688999999999 4444432 2222
Q ss_pred cCCCCCCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhC--------CCceeEEEEeCCcc
Q 003886 642 SLPGKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--------PDKFVAAAARNPLC 706 (789)
Q Consensus 642 ~~~~~~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~--------p~~~~a~v~~~pv~ 706 (789)
..++++| +.|+..|++|+.++. .-|+++|.|+|+|.||..+..++... ..+|+.+|+.+|..
T Consensus 180 ~~~gN~G---l~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SaGa~~v~~~l~sp~~~~~~~s~gLF~raI~qSG~~ 252 (544)
T d1thga_ 180 EGNTNAG---LHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLIAYGGDNTYNGKKLFHSAILQSGGP 252 (544)
T ss_dssp HTCTTHH---HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGTCCEETTEESCSEEEEESCCC
T ss_pred cccccHH---HHHhhhhhhhhhhhhcccccCCCceEeeeeccchHHHHHHHhCcCCCcccchhhhhcccccccccc
Confidence 2344554 889999999999862 25999999999999999888776531 24899999999753
|
| >d2pl5a1 c.69.1.40 (A:5-366) Homoserine O-acetyltransferase {Leptospira interrogans [TaxId: 173]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: O-acetyltransferase domain: Homoserine O-acetyltransferase species: Leptospira interrogans [TaxId: 173]
Probab=98.87 E-value=8.6e-09 Score=106.41 Aligned_cols=113 Identities=16% Similarity=0.187 Sum_probs=77.6
Q ss_pred CCCCcEEEEEcCCCCCCCc----------hhh-HH---HHHHHHHCCcEEEEEcCCCCCCCCchhhccCCC--------C
Q 003886 589 CSCDPLIVVLHGGPHSVSL----------SSY-SK---SLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPG--------K 646 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~----------~~~-~~---~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~--------~ 646 (789)
..+.++||+.|+-.++... ..| .. .-..+...-|.||++|.-| .|+|.+....... .
T Consensus 39 ~~~~NaVlv~h~~tG~~~~~g~~~~~~~~~gww~~liG~g~~lDt~~yfVI~~n~lG-~~~~ss~~~s~~p~~~~~yg~~ 117 (362)
T d2pl5a1 39 SSKNNAILICHALSGDAHAAGYHSGSDKKPGWWDDYIGPGKSFDTNQYFIICSNVIG-GCKGSSGPLSIHPETSTPYGSR 117 (362)
T ss_dssp TTSCCEEEEECCSSCCSCCSSBSSTTCSSCCTTTTTEETTSSEETTTCEEEEECCTT-CSSSSSSTTSBCTTTSSBCGGG
T ss_pred CCCCCEEEECCCCCcchhccccCCccCCCcchHHHhcCCCCccCccccEEEeecccc-CcccccCccccccccccccCcC
Confidence 3456999999995554321 122 11 1224455669999999998 3444433222211 1
Q ss_pred CCcccHHHHHHHHHHHHHcCCCCCccEE-EEEcCccHHHHHHHHHhCCCceeEEEEeCC
Q 003886 647 VGSQDVNDVLTAIDHVIDMGLANPSKVT-VVGGSHGGFLTTHLIGQAPDKFVAAAARNP 704 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~~~d~~rv~-l~G~S~GG~~a~~~~~~~p~~~~a~v~~~p 704 (789)
+....+.|+.++-..|+++ +..+++. |+|+||||+.|+..|.++|++++.+|++++
T Consensus 118 fP~~t~~D~v~~~~~ll~~--LGI~~l~~viG~SmGGmqAl~wA~~yPd~v~~~v~ia~ 174 (362)
T d2pl5a1 118 FPFVSIQDMVKAQKLLVES--LGIEKLFCVAGGSMGGMQALEWSIAYPNSLSNCIVMAS 174 (362)
T ss_dssp SCCCCHHHHHHHHHHHHHH--TTCSSEEEEEEETHHHHHHHHHHHHSTTSEEEEEEESC
T ss_pred CccchhHHHHHHHHHHHHH--hCcCeeEEEeehhHHHHHHHHHHHhCchHhhhhccccc
Confidence 2234588999988888876 4456666 779999999999999999999999999886
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.87 E-value=2.6e-08 Score=102.17 Aligned_cols=137 Identities=12% Similarity=0.120 Sum_probs=86.7
Q ss_pred CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc
Q 003886 268 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (789)
Q Consensus 268 ~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (789)
.+.....|.+||+.+++..... ......+..++|+|||+. |+..+ .+..|+.+++.
T Consensus 201 ~~~~d~~v~i~d~~~~~~~~~~-~~h~~~i~~v~~~p~~~~----l~s~s---------------~d~~i~~~~~~---- 256 (340)
T d1tbga_ 201 SGACDASAKLWDVREGMCRQTF-TGHESDINAICFFPNGNA----FATGS---------------DDATCRLFDLR---- 256 (340)
T ss_dssp EEETTTEEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSE----EEEEE---------------TTSCEEEEETT----
T ss_pred EeecCceEEEEECCCCcEEEEE-eCCCCCeEEEEECCCCCE----EEEEe---------------CCCeEEEEeec----
Confidence 3445678999999988765431 223446778999999987 66655 22357777772
Q ss_pred hhhhhhhhcCCCCCCCeeecC--CCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceee
Q 003886 348 EASELELKESSSEDLPVVNLT--ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 425 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt--~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~ 425 (789)
.......+. .....+....|+|||+.|+..+.+. .|++||+.+++......+.
T Consensus 257 ------------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg-----------~i~iwd~~~~~~~~~~~~H-- 311 (340)
T d1tbga_ 257 ------------ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF-----------NCNVWDALKADRAGVLAGH-- 311 (340)
T ss_dssp ------------TTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTS-----------CEEEEETTTCCEEEEECCC--
T ss_pred ------------ccccccccccccccCceEEEEECCCCCEEEEEECCC-----------EEEEEECCCCcEEEEEcCC--
Confidence 122222222 2334567889999999887766442 5899998775542111110
Q ss_pred EEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 426 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 426 v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
...+..+.|+|||+.| +++..++...||
T Consensus 312 -----------------~~~V~~l~~s~d~~~l-~s~s~Dg~v~iW 339 (340)
T d1tbga_ 312 -----------------DNRVSCLGVTDDGMAV-ATGSWDSFLKIW 339 (340)
T ss_dssp -----------------SSCEEEEEECTTSSCE-EEEETTSCEEEE
T ss_pred -----------------CCCEEEEEEeCCCCEE-EEEccCCEEEEe
Confidence 1134567899999855 566667776666
|
| >d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Surfactin synthetase, SrfA species: Bacillus subtilis [TaxId: 1423]
Probab=98.83 E-value=5.9e-09 Score=101.46 Aligned_cols=91 Identities=12% Similarity=0.060 Sum_probs=64.9
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCCC
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGLA 668 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~ 668 (789)
.++.++||++||.+++ ...|......| .+|.|+.+|++| ++. .++++.+.++.+ .
T Consensus 14 ~~~~~~l~~lhg~~g~--~~~~~~la~~L--~~~~v~~~~~~g---~~~-------------~a~~~~~~i~~~-----~ 68 (230)
T d1jmkc_ 14 QDQEQIIFAFPPVLGY--GLMYQNLSSRL--PSYKLCAFDFIE---EED-------------RLDRYADLIQKL-----Q 68 (230)
T ss_dssp TTCSEEEEEECCTTCC--GGGGHHHHHHC--TTEEEEEECCCC---STT-------------HHHHHHHHHHHH-----C
T ss_pred CCCCCeEEEEcCCCCC--HHHHHHHHHHC--CCCEEeccCcCC---HHH-------------HHHHHHHHHHHh-----C
Confidence 3466899999997775 56787777788 379999999986 321 245555555443 2
Q ss_pred CCccEEEEEcCccHHHHHHHHHhCCC---ceeEEEEeCC
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQAPD---KFVAAAARNP 704 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~~p~---~~~a~v~~~p 704 (789)
...++.|+|||+||.++..+|.+.|+ .+..++...+
T Consensus 69 ~~~~~~lvGhS~GG~vA~~~A~~~~~~~~~v~~l~~~~~ 107 (230)
T d1jmkc_ 69 PEGPLTLFGYSAGCSLAFEAAKKLEGQGRIVQRIIMVDS 107 (230)
T ss_dssp CSSCEEEEEETHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred CCCcEEEEeeccChHHHHHHHHhhhhhCccceeeecccc
Confidence 45779999999999999999887654 4445554443
|
| >d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.83 E-value=5.3e-09 Score=105.35 Aligned_cols=102 Identities=18% Similarity=0.259 Sum_probs=76.7
Q ss_pred CCCCCcEEEEEcCCCCCCCc---hhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHH
Q 003886 588 DCSCDPLIVVLHGGPHSVSL---SSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVID 664 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~---~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~ 664 (789)
...++| ||++||..+.... ..|......|.++||.|+++|++| +|... ...+++.+.|+.+.+
T Consensus 4 ~~~~~P-vvlvHG~~g~~~~~~~~yw~~i~~~L~~~G~~v~~~~~~~---~~~~~----------~~a~~l~~~i~~~~~ 69 (285)
T d1ex9a_ 4 TQTKYP-IVLAHGMLGFDNILGVDYWFGIPSALRRDGAQVYVTEVSQ---LDTSE----------VRGEQLLQQVEEIVA 69 (285)
T ss_dssp TCCSSC-EEEECCTTCCSEETTEESSTTHHHHHHHTTCCEEEECCCS---SSCHH----------HHHHHHHHHHHHHHH
T ss_pred CCCCCC-EEEECCCCCCccccchhhHHHHHHHHHhCCCEEEEeCCCC---CCCcH----------HHHHHHHHHHHHHHH
Confidence 346788 6889996543211 235667889999999999999986 44332 124566666666665
Q ss_pred cCCCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCc
Q 003886 665 MGLANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPL 705 (789)
Q Consensus 665 ~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv 705 (789)
. .+.+++.++|||+||..+..++.++|++++.+|..+..
T Consensus 70 ~--~g~~~v~ligHS~GG~~~r~~~~~~p~~v~~lv~i~tP 108 (285)
T d1ex9a_ 70 L--SGQPKVNLIGHSHGGPTIRYVAAVRPDLIASATSVGAP 108 (285)
T ss_dssp H--HCCSCEEEEEETTHHHHHHHHHHHCGGGEEEEEEESCC
T ss_pred H--cCCCeEEEEEECccHHHHHHHHHHCCccceeEEEECCC
Confidence 5 35678999999999999999999999999999988764
|
| >d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB esterase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Thermophilic para-nitrobenzyl esterase (PNB esterase) species: Bacillus subtilis [TaxId: 1423]
Probab=98.83 E-value=1.1e-09 Score=120.11 Aligned_cols=130 Identities=20% Similarity=0.252 Sum_probs=90.7
Q ss_pred cCCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchh-hHHH-HHHHHHCCcEEEEEcCC-CCCCCC--chhhccCC
Q 003886 570 KGAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YSKS-LAFLSSVGYSLLIVNYR-GSLGFG--EEALQSLP 644 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~-~~~~-~~~la~~Gy~V~~~d~r-Gs~G~G--~~~~~~~~ 644 (789)
+.|.+.|. ++.|+. ..++.|++|+||||........ +... ...+++.+++||.+||| |.-||- .+.....+
T Consensus 78 sEDCL~ln--i~~P~~--~~~~lPV~v~ihGG~~~~g~~~~~~~~~~~~~~~~~vVvV~~nYRlg~~GFl~~~~~~~~~~ 153 (483)
T d1qe3a_ 78 SEDCLYVN--VFAPDT--PSQNLPVMVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFGFLHLSSFDEAYS 153 (483)
T ss_dssp CSCCCEEE--EEEECS--SCCSEEEEEEECCSTTTSCCTTSGGGCCHHHHHHHTCEEEEECCCCHHHHSCCCTTTCTTSC
T ss_pred CCcCCEEE--EEECCC--CCCCCceEEEEeecccccCCccccccccccccccCceEEEeecccccchhhccccccccccc
Confidence 34555444 677864 5678999999999876543332 2222 23445567999999999 444442 12112233
Q ss_pred CCCCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhC--CCceeEEEEeCCcc
Q 003886 645 GKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 706 (789)
Q Consensus 645 ~~~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~--p~~~~a~v~~~pv~ 706 (789)
+++ -+.|+..|++|+.+.. .-|+++|.|+|+|.||..+..++... ..+|+.+|+.+|..
T Consensus 154 gN~---Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 217 (483)
T d1qe3a_ 154 DNL---GLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALLAMPAAKGLFQKAIMESGAS 217 (483)
T ss_dssp SCH---HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHTTCGGGTTSCSEEEEESCCC
T ss_pred ccc---ccHHHHHHHHHHHHHHHHcCCCcccceeeccccccchhhhhhcccccCCcceeeccccCCc
Confidence 344 4889999999999862 25999999999999999988887632 25899999999854
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.80 E-value=9.4e-08 Score=97.78 Aligned_cols=241 Identities=13% Similarity=0.143 Sum_probs=122.1
Q ss_pred CCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCC-------
Q 003886 104 GNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPEN------- 176 (789)
Q Consensus 104 ~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~------- 176 (789)
.||||+++..+ .. ....|..+++.+. .....+...............++||||++++.......
T Consensus 41 ~spDg~~l~v~-~~-------~~~~v~v~D~~t~-~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~ 111 (337)
T d1pbyb_ 41 VAPGGRIAYAT-VN-------KSESLVKIDLVTG-ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE 111 (337)
T ss_dssp ECTTSSEEEEE-ET-------TTTEEEEEETTTC-CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred ECCCCCEEEEE-EC-------CCCeEEEEECCCC-cEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecc
Confidence 46999987443 21 2336777776332 21122221111111123456789999999987754321
Q ss_pred -CCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCC-----------C
Q 003886 177 -ESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTK-----------G 243 (789)
Q Consensus 177 -~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~-----------~ 243 (789)
....+...+ ..++..+.+...... .++.|||||++++....+.. .|+....+ .
T Consensus 112 ~~~~~~~~~d~~~~~~~~~~~~~~~~----------~~~~~s~dg~~l~~~~~~~~----~~d~~~~~~~~~~~~~~~~~ 177 (337)
T d1pbyb_ 112 VQPTRVALYDAETLSRRKAFEAPRQI----------TMLAWARDGSKLYGLGRDLH----VMDPEAGTLVEDKPIQSWEA 177 (337)
T ss_dssp ECCCEEEEEETTTTEEEEEEECCSSC----------CCEEECTTSSCEEEESSSEE----EEETTTTEEEEEECSTTTTT
T ss_pred ccccceeeccccCCeEEEeccccCCc----------eEEEEcCCCCEEEEEcCCcc----eeeeecCcEEEEeecCCccc
Confidence 112233333 344444444443333 68999999999876543211 01100000 0
Q ss_pred C-CCCcC-CCCCCC---cc-----eee--CCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCcc
Q 003886 244 G-SSDKD-CNSWKG---QG-----DWE--EDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 244 ~-~~~~~-~~~~~~---~~-----~~~--~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~ 311 (789)
. ....+ ...+.. .. ... .+............+.+++..+++.......+.........++|+++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 254 (337)
T d1pbyb_ 178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTR--- 254 (337)
T ss_dssp TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSE---
T ss_pred cceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceE---
Confidence 0 00000 000000 00 000 011111222334568888988887654421223334456677888775
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEec
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
+ +... ..|.++|+ .+++..............+|||||++|+..+.
T Consensus 255 -~-~~~~----------------~~i~v~d~-----------------~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~ 299 (337)
T d1pbyb_ 255 -A-FGAY----------------NVLESFDL-----------------EKNASIKRVPLPHSYYSVNVSTDGSTVWLGGA 299 (337)
T ss_dssp -E-EEEE----------------SEEEEEET-----------------TTTEEEEEEECSSCCCEEEECTTSCEEEEESB
T ss_pred -E-EEcc----------------ccEEEEEC-----------------CCCcEEEEEcCCCCEEEEEECCCCCEEEEEeC
Confidence 3 3331 26888898 55554333334455778999999998875442
Q ss_pred CCCCCCCCccccceeEEeecCCCCC
Q 003886 392 KSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 392 ~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
. .+|.+||..+.+.
T Consensus 300 ~-----------~~i~v~D~~t~~~ 313 (337)
T d1pbyb_ 300 L-----------GDLAAYDAETLEK 313 (337)
T ss_dssp S-----------SEEEEEETTTCCE
T ss_pred C-----------CcEEEEECCCCcE
Confidence 2 3699999987554
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.78 E-value=1.4e-07 Score=96.91 Aligned_cols=100 Identities=8% Similarity=0.045 Sum_probs=66.0
Q ss_pred EEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCcc
Q 003886 159 VVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 237 (789)
Q Consensus 159 ~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~ 237 (789)
|++||+|++|++....+ ++.+++ ..++..+.+.++... . ..++.|||||++|+....
T Consensus 2 ~a~~~~~~~l~~~~~~~----~v~v~D~~t~~~~~t~~~~~~~--~------p~~l~~spDG~~l~v~~~---------- 59 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPN----NLHVVDVASDTVYKSCVMPDKF--G------PGTAMMAPDNRTAYVLNN---------- 59 (346)
T ss_dssp CCCCTTCEEEEEEETTT----EEEEEETTTTEEEEEEECSSCC--S------SCEEEECTTSSEEEEEET----------
T ss_pred ccCCCCCcEEEEEcCCC----EEEEEECCCCCEEEEEEcCCCC--C------cceEEECCCCCEEEEEEC----------
Confidence 68999999999877654 455555 556666655553221 0 158999999998765432
Q ss_pred CCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC-----CccceEEEeeCCCCCccE
Q 003886 238 LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-----LSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-----~~~~~~~wSPDg~~~~~~ 312 (789)
....|++||+.+++.......... .....++|||||+.
T Consensus 60 ---------------------------------~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~---- 102 (346)
T d1jmxb_ 60 ---------------------------------HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKE---- 102 (346)
T ss_dssp ---------------------------------TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSE----
T ss_pred ---------------------------------CCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCE----
Confidence 236799999999976543101111 13568899999997
Q ss_pred EEEEe
Q 003886 313 LVFVG 317 (789)
Q Consensus 313 l~f~~ 317 (789)
++...
T Consensus 103 l~v~~ 107 (346)
T d1jmxb_ 103 VYATV 107 (346)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 65544
|
| >d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase {Penicillium funiculosum [TaxId: 28572]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: PHB depolymerase-like domain: Polyhydroxybutyrate depolymerase species: Penicillium funiculosum [TaxId: 28572]
Probab=98.76 E-value=1.8e-09 Score=109.66 Aligned_cols=107 Identities=17% Similarity=0.145 Sum_probs=67.7
Q ss_pred CCCCccEEEEEcCccHHHHHHHHHhCCCceeEEE-EeCCccchhhhhcCCCCCcchhhhhccCccccccCCCCC----hh
Q 003886 667 LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAA-ARNPLCNLALMVGTTDIPDWCYVESYGSKGKDSFTESPS----VE 741 (789)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v-~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 741 (789)
.+|++||+|+|+|+||++|++++..+|++|++++ ..++.... .. .+ ....... ....+. ..
T Consensus 7 ~iDp~rI~V~G~SsGG~mA~~la~a~sd~f~aga~vvAg~p~~-ca---~~---~~~~~~~-------~~~~~~~~~~~~ 72 (318)
T d2d81a1 7 NVNPNSVSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYD-CA---RN---QYYTSCM-------YNGYPSITTPTA 72 (318)
T ss_dssp CEEEEEEEEEEETHHHHHHHHHHHHTTTTSCSEEEEESCCCTT-TT---SS---SCGGGGS-------TTCCCCCHHHHH
T ss_pred CCCccceEEEEECHHHHHHHHHHHhcccceeeeEEEeccCchh-hh---cc---cchHHHh-------hcCCCCCcChhH
Confidence 3899999999999999999999999999997543 33443211 00 00 0000000 001111 11
Q ss_pred hHHHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHHHHHCCC
Q 003886 742 DLTRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQVIYHIPF 787 (789)
Q Consensus 742 ~~~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l~~~l~~ 787 (789)
..+.+...++.........|+||+||++|.+||+.++.++++.|++
T Consensus 73 ~~~~~~~~~i~~~~~~~~~pvll~hG~~D~~Vpp~~s~~l~~~l~~ 118 (318)
T d2d81a1 73 NMKSWSGNQIASVANLGQRKIYMWTGSSDTTVGPNVMNQLKAQLGN 118 (318)
T ss_dssp HHHHHBTTTBCCGGGGGGCEEEEEEETTCCSSCHHHHHHHHHHHTT
T ss_pred HHHHHhhcCCcchhccCCCCEEEEecCCCCCcCHHHHHHHHHHHHc
Confidence 2222223333333344568999999999999999999999999875
|
| >d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Esterase EstA species: Aspergillus niger [TaxId: 5061]
Probab=98.76 E-value=3.1e-09 Score=117.49 Aligned_cols=131 Identities=18% Similarity=0.191 Sum_probs=89.4
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch-hhHHHHHHHH-HCCcEEEEEcCC-CCCCCCchh--hccCCC
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLS-SVGYSLLIVNYR-GSLGFGEEA--LQSLPG 645 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~~~~~~~la-~~Gy~V~~~d~r-Gs~G~G~~~--~~~~~~ 645 (789)
.|.+.|. ++.|+.....++.|++|+||||....... .+......++ ..+++||.+||| |.-||-... .....+
T Consensus 78 EDCL~Ln--I~~P~~~~~~~~~PV~v~ihGG~~~~G~~~~~~~~~~~~~~~~~vVvVt~nYRlg~~GFl~~~~~~~~~~~ 155 (517)
T d1ukca_ 78 EDCLFIN--VFKPSTATSQSKLPVWLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALGFLASEKVRQNGDL 155 (517)
T ss_dssp SCCCEEE--EEEETTCCTTCCEEEEEEECCSTTTSCCSCSCCCHHHHHHTTSCCEEEEECCCCHHHHHCCCHHHHHSSCT
T ss_pred CcCCEEE--EEeCCCCCCCCCceEEEEEcCCccccCCCccccchhhhhhhccccceEEEEecccceeecCcccccccccc
Confidence 4565555 67787554567889999999987654332 2322222333 567899999999 444442221 111223
Q ss_pred CCCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHh----CCCceeEEEEeCCcc
Q 003886 646 KVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQ----APDKFVAAAARNPLC 706 (789)
Q Consensus 646 ~~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~----~p~~~~a~v~~~pv~ 706 (789)
++ -+.|+..|++|+.++. .-|+++|.|+|+|.||..+..++.. ...+|+.+|+.+|..
T Consensus 156 N~---Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s~~~~~~gLF~raI~qSg~~ 220 (517)
T d1ukca_ 156 NA---GLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLSAYGGKDEGLFIGAIVESSFW 220 (517)
T ss_dssp TH---HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHTGGGTCCCSSCSEEEEESCCC
T ss_pred ch---hHHHHHHHHHHHHHHHHhhcCCcccccccccccchhhHHHHHhccccccccccceeeeccccc
Confidence 44 4889999999999862 2599999999999999988765542 224899999999854
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.75 E-value=1.8e-07 Score=96.08 Aligned_cols=164 Identities=12% Similarity=0.065 Sum_probs=101.4
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
+.+....|||||++|+.+....+... ....++.++....+. +..+.+ ..+.|+|+++.++.++..
T Consensus 116 ~~v~~v~~s~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~---~h~~~v------~~~~~~~~~~~~~~~~~~----- 180 (325)
T d1pgua1 116 GPISDISWDFEGRRLCVVGEGRDNFG-VFISWDSGNSLGEVS---GHSQRI------NACHLKQSRPMRSMTVGD----- 180 (325)
T ss_dssp SCEEEEEECTTSSEEEEEECCSSCSE-EEEETTTCCEEEECC---SCSSCE------EEEEECSSSSCEEEEEET-----
T ss_pred CcEEEEEECCCCCccceeeccccceE-EEEeecccccceeee---eccccc------ccccccccccceEEEeec-----
Confidence 45778999999999998876542221 222234444333322 111222 689999999876654332
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEec-cCC-CCCCccceEEEeeCCCCCcc
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KGI-PKSLSVGQVVWAPLNEGLHQ 311 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l-~~~-~~~~~~~~~~wSPDg~~~~~ 311 (789)
+..+.+||...++.... ... .....+..++|+||+..
T Consensus 181 --------------------------------------d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~--- 219 (325)
T d1pgua1 181 --------------------------------------DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE--- 219 (325)
T ss_dssp --------------------------------------TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC---
T ss_pred --------------------------------------ccccccccccccccceecccccCCCCccEEeeeccccce---
Confidence 25677888877654332 111 12234678999999766
Q ss_pred EEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCccCcceec---CCCCEEE
Q 003886 312 YLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSAFFPRFS---PDGKFLV 387 (789)
Q Consensus 312 ~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~S---pDG~~la 387 (789)
++.++. .+..|.++|+ .+++ ...|..+........|+ |||++|+
T Consensus 220 -~l~s~~--------------~d~~i~iwd~-----------------~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~ 267 (325)
T d1pgua1 220 -FVITVG--------------SDRKISCFDG-----------------KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA 267 (325)
T ss_dssp -EEEEEE--------------TTCCEEEEET-----------------TTCCEEEECCBTTBCCCSCEEEEEESSSSEEE
T ss_pred -eccccc--------------cccceeeeee-----------------ccccccccccccccccccceeeeeccCCCEEE
Confidence 665552 2236888887 4444 45565555556666776 8999998
Q ss_pred EEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 388 FLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 388 ~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
..+.+. .|.+||+.+++.
T Consensus 268 s~s~D~-----------~i~iwd~~~~~~ 285 (325)
T d1pgua1 268 TVGADA-----------TIRVWDVTTSKC 285 (325)
T ss_dssp EEETTS-----------EEEEEETTTTEE
T ss_pred EEeCCC-----------eEEEEECCCCCE
Confidence 777543 589999887543
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.74 E-value=6.1e-07 Score=91.00 Aligned_cols=291 Identities=9% Similarity=-0.062 Sum_probs=133.7
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEe---cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEe-ecC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELW---SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVA-EEP 229 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~-~~~ 229 (789)
..+...+|||||++||..+.++ ...+| .......+... .+..+.| ..++|+|++..+++++ .+.
T Consensus 12 d~I~~l~fsp~~~~L~s~s~Dg-----~v~iwd~~~~~~~~~~~~~-~~h~~~V------~~v~f~~~~~~~l~sg~~d~ 79 (342)
T d1yfqa_ 12 DYISDIKIIPSKSLLLITSWDG-----SLTVYKFDIQAKNVDLLQS-LRYKHPL------LCCNFIDNTDLQIYVGTVQG 79 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTS-----EEEEEEEETTTTEEEEEEE-EECSSCE------EEEEEEESSSEEEEEEETTS
T ss_pred CCEEEEEEeCCCCEEEEEECCC-----eEEEEEccCCCcceEEEEe-cCCCCCE------EEEEEeCCCCCEEEEccccc
Confidence 4588999999999999877543 34555 23332222221 1122233 7899999876555444 333
Q ss_pred CCCCCCccCCCCCCCCCCcCC-CCCCCcceeeCCcccccCCccCceEEEEEccCCceEe-----ccCCCCCCccceEEEe
Q 003886 230 SPSKPTFSLGSTKGGSSDKDC-NSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQA-----VKGIPKSLSVGQVVWA 303 (789)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~-----l~~~~~~~~~~~~~wS 303 (789)
... .|.............. ........+..+....+.......+.+||+.++.... +.............+.
T Consensus 80 ~v~--~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (342)
T d1yfqa_ 80 EIL--KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMD 157 (342)
T ss_dssp CEE--EECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEE
T ss_pred cee--eeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeee
Confidence 221 2221111111100000 0001111122222233333456778888876433211 1111112234456778
Q ss_pred eCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcce-ecCC
Q 003886 304 PLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPR-FSPD 382 (789)
Q Consensus 304 PDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~-~SpD 382 (789)
+++.. ++..+. ...|..+++.... ................... ++.+
T Consensus 158 ~~~~~----~~~~~~---------------d~~i~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~ 205 (342)
T d1yfqa_ 158 TNSSR----LIVGMN---------------NSQVQWFRLPLCE-------------DDNGTIEESGLKYQIRDVALLPKE 205 (342)
T ss_dssp ECSSE----EEEEES---------------TTEEEEEESSCCT-------------TCCCEEEECSCSSCEEEEEECSGG
T ss_pred ccCCc----eeeecC---------------CCcEEEEecccCc-------------ccceeeeecccccceeeeEeecCC
Confidence 88876 665542 2356677762100 0011111111122222223 3445
Q ss_pred CCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEE
Q 003886 383 GKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSS 462 (789)
Q Consensus 383 G~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~ 462 (789)
+..++..+.+. .+.++++.............. ........ ...+ ....+..+.|+|+++.| +++
T Consensus 206 ~~~~~~~s~dg-----------~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~-~~~~v~~l~~sp~~~~l-asg 269 (342)
T d1yfqa_ 206 QEGYACSSIDG-----------RVAVEFFDDQGDDYNSSKRFA-FRCHRLNL--KDTN-LAYPVNSIEFSPRHKFL-YTA 269 (342)
T ss_dssp GCEEEEEETTS-----------EEEEEECCTTCCSTTCTTCEE-EECCCCCT--TCCS-SCCCEEEEEECTTTCCE-EEE
T ss_pred CCEEEeecCCC-----------eEEEEEecCCcceeeccccce-eeeeeecc--CCCc-ccccceeEEecCCccEE-EEE
Confidence 55555544332 355555544332211111111 00000000 0000 11123357899999854 666
Q ss_pred EeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeC
Q 003886 463 IWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSS 508 (789)
Q Consensus 463 ~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss 508 (789)
..++...+ +|+.+++...-...........++++|+.++...++
T Consensus 270 ~~Dg~v~v--WD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sd 313 (342)
T d1yfqa_ 270 GSDGIISC--WNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSD 313 (342)
T ss_dssp ETTSCEEE--EETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEEC
T ss_pred CCCCEEEE--EECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcC
Confidence 66665555 588788765544333334567899999987766554
|
| >d1ea5a_ c.69.1.1 (A:) Acetylcholinesterase {Pacific electric ray (Torpedo californica) [TaxId: 7787]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Pacific electric ray (Torpedo californica) [TaxId: 7787]
Probab=98.72 E-value=3.7e-09 Score=117.40 Aligned_cols=129 Identities=23% Similarity=0.214 Sum_probs=89.1
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhh--HHHHHHHHHCCcEEEEEcCC-CCCCCCchh-hccCCCC
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSY--SKSLAFLSSVGYSLLIVNYR-GSLGFGEEA-LQSLPGK 646 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~--~~~~~~la~~Gy~V~~~d~r-Gs~G~G~~~-~~~~~~~ 646 (789)
.|.+.|. ++.|.. ..++.|++|+||||......... ......+++.+.+||.+||| |.-||-... ....+++
T Consensus 89 EDCL~Ln--I~~P~~--~~~~lPV~v~ihGG~~~~g~~~~~~~~~~~~~~~~~vvvVt~nYRlg~~GFl~~~~~~~~~gN 164 (532)
T d1ea5a_ 89 EDCLYLN--IWVPSP--RPKSTTVMVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALHGSQEAPGN 164 (532)
T ss_dssp SCCCEEE--EEECSS--CCSSEEEEEEECCSTTTCCCTTCGGGCTHHHHHHHTCEEEECCCCCHHHHHCCCTTCSSSCSC
T ss_pred ccCCEEE--EEeCCC--CCCCCcEEEEEEcCCcccccCCccccCcchhhcccCccEEEEeeccccccccccccccCCCCc
Confidence 4665565 667864 45689999999998754322211 11223456789999999999 444442211 1122334
Q ss_pred CCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhC--CCceeEEEEeCCcc
Q 003886 647 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 706 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~--p~~~~a~v~~~pv~ 706 (789)
+ -+.|+..|++|+.++. .-|+++|.|+|+|.||..+..++... ..+|+.+|+.++..
T Consensus 165 ~---Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lF~~aI~~Sg~~ 226 (532)
T d1ea5a_ 165 V---GLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHILSPGSRDLFRRAILQSGSP 226 (532)
T ss_dssp H---HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCHHHHTTCSEEEEESCCT
T ss_pred c---cchhHHHHHHHHHHHHHhhcCCccceEeeeecccccchhhhccCccchhhhhhheeecccc
Confidence 4 4899999999999862 25999999999999999888777631 25899999988754
|
| >d1dx4a_ c.69.1.1 (A:) Acetylcholinesterase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.69 E-value=7.6e-09 Score=115.80 Aligned_cols=117 Identities=20% Similarity=0.225 Sum_probs=81.7
Q ss_pred CCCCCcEEEEEcCCCCCCCch-hhHHHHHHHH-HCCcEEEEEcCC-CCCCCCc-------hhhccCCCCCCcccHHHHHH
Q 003886 588 DCSCDPLIVVLHGGPHSVSLS-SYSKSLAFLS-SVGYSLLIVNYR-GSLGFGE-------EALQSLPGKVGSQDVNDVLT 657 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~-~~~~~~~~la-~~Gy~V~~~d~r-Gs~G~G~-------~~~~~~~~~~~~~~~~D~~~ 657 (789)
..++.|+||+||||....... ........|+ ..+.+||.+||| |.-||-. +......+++ -+.|+..
T Consensus 135 ~~~~lPV~V~ihGG~f~~Gs~~~~~~~~~~l~~~~~vVvVtinYRlg~fGFl~~~~~~~~~~~~~~~gN~---Gl~Dq~~ 211 (571)
T d1dx4a_ 135 TTNGLPILIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAFGFLHLAPEMPSEFAEEAPGNV---GLWDQAL 211 (571)
T ss_dssp CCSSEEEEEEECCSTTTCCCTTCGGGCCHHHHHHHTCEEEEECCCCTHHHHCCCGGGSCGGGTTSSCSCH---HHHHHHH
T ss_pred CCCCCeEEEEEeCCCccCCCCcccccchhhhhhcCCeeEEeecceeccccccccccccccccccCCCCcc---cchHHHH
Confidence 457899999999987643222 1222234555 446999999999 5444421 1112233344 4889999
Q ss_pred HHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhC--CCceeEEEEeCCccc
Q 003886 658 AIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLCN 707 (789)
Q Consensus 658 ~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~--p~~~~a~v~~~pv~~ 707 (789)
|++|+.++. .-|+++|.|+|+|.||..+..++... ...|+.+|+.++...
T Consensus 212 AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~ll~sp~~~~lf~~aI~~Sg~~~ 266 (571)
T d1dx4a_ 212 AIRWLKDNAHAFGGNPEWMTLFGESAGSSSVNAQLMSPVTRGLVKRGMMQSGTMN 266 (571)
T ss_dssp HHHHHHHSTGGGTEEEEEEEEEEETHHHHHHHHHHHCTTTTTSCCEEEEESCCTT
T ss_pred HHHHHHHhhhhhccCCCceEeccccCccceeeeeeccccccccccccceeccccc
Confidence 999999863 25899999999999999998777642 258999999888654
|
| >d2bcea_ c.69.1.1 (A:) Bile-salt activated lipase (cholesterol esterase) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Bile-salt activated lipase (cholesterol esterase) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.68 E-value=4.1e-09 Score=118.15 Aligned_cols=132 Identities=20% Similarity=0.236 Sum_probs=89.4
Q ss_pred cCCCeeEEEEEEecCCC-CCCCCCcEEEEEcCCCCCCCch-------hhHHHHHHHHH-CCcEEEEEcCC-CCCCCCchh
Q 003886 570 KGAQKPFEAIFVSSSHK-KDCSCDPLIVVLHGGPHSVSLS-------SYSKSLAFLSS-VGYSLLIVNYR-GSLGFGEEA 639 (789)
Q Consensus 570 ~~~g~~l~~~~~~P~~~-~~~~~~P~vv~~HGg~~~~~~~-------~~~~~~~~la~-~Gy~V~~~d~r-Gs~G~G~~~ 639 (789)
+.|.+.|. ++.|... +..++.|+||+||||....... .+......|+. .+.+||.+||| |.-||-...
T Consensus 77 sEDCL~LN--I~~P~~~~~~~~~lPV~V~iHGG~f~~Gs~~~~~~~~~~~~dg~~la~~~~vIvVt~nYRlg~~GFl~~~ 154 (579)
T d2bcea_ 77 NEDCLYLN--IWVPQGRKEVSHDLPVMIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLGFLSTG 154 (579)
T ss_dssp CSCCCEEE--EEEEECSSSCCCSEEEEEECCCCSEEEC-------CTTGGGCCHHHHHHHTCEEEEECCCCHHHHHCCCS
T ss_pred CCcCCEEE--EEECCCCCCCCCCCcEEEEECCCcccCCCCCCcccCCccccchhhhhccCCEEEEeeccccccccccccc
Confidence 34665555 6667543 2356899999999987532211 11112245554 46999999999 544443322
Q ss_pred hccCCCCCCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHh--CCCceeEEEEeCCcc
Q 003886 640 LQSLPGKVGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 706 (789)
Q Consensus 640 ~~~~~~~~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~--~p~~~~a~v~~~pv~ 706 (789)
....++++| +.|+..|++|+.++. .-|+++|.|+|+|.||..+..++.. ...+|+.+|+.++..
T Consensus 155 ~~~~~gN~G---l~Dq~~AL~WV~~nI~~FGGDP~~VTl~G~SAGa~sv~~~l~sp~~~gLF~raI~~SGs~ 223 (579)
T d2bcea_ 155 DSNLPGNYG---LWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTLSPYNKGLIKRAISQSGVG 223 (579)
T ss_dssp STTCCCCHH---HHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGTTTCSEEEEESCCT
T ss_pred ccCCCccch---hhHHHHHHHHHhhhhhhhccCcCceEeeecccccchhhhhhhhhcccCccccceeccCCc
Confidence 223344444 889999999999862 2599999999999999988877653 246899999999754
|
| >d1p0ia_ c.69.1.1 (A:) Butyryl cholinesterase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Butyryl cholinesterase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=8.1e-09 Score=114.40 Aligned_cols=129 Identities=21% Similarity=0.193 Sum_probs=88.0
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchh-hHHHHHHH-HHCCcEEEEEcCC-CCCCCCch-hhccCCCC
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSS-YSKSLAFL-SSVGYSLLIVNYR-GSLGFGEE-ALQSLPGK 646 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~-~~~~~~~l-a~~Gy~V~~~d~r-Gs~G~G~~-~~~~~~~~ 646 (789)
.|.+.|. ++.|.. ..++.|++|+||||........ +......+ ++.+.+||.+||| |.-||-.. .....++
T Consensus 87 EDCL~ln--I~~P~~--~~~~~PV~v~ihGG~~~~gs~~~~~~~~~~~~~~~~vVvVt~nYRlg~~Gfl~~~~~~~~~g- 161 (526)
T d1p0ia_ 87 EDCLYLN--VWIPAP--KPKNATVLIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALGFLALPGNPEAPG- 161 (526)
T ss_dssp SCCCEEE--EEEESS--CCSSEEEEEEECCSTTTSCCTTCGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCTTCTTSCS-
T ss_pred CcCCEEE--EEeCCC--CCCCCceEEEEECCCcccccCcccccCccccccccceeEEecccccccccccCCCCcccccc-
Confidence 4665555 667863 4567899999999886543322 22222333 4678999999999 44343221 1112233
Q ss_pred CCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHh--CCCceeEEEEeCCcc
Q 003886 647 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQ--APDKFVAAAARNPLC 706 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~--~p~~~~a~v~~~pv~ 706 (789)
..-+.|+..|++|+.++. .-|+++|.|+|+|.||..+..++.. ...+|+.+|+.++..
T Consensus 162 --N~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~~~sp~~~~lf~~aI~~Sg~~ 224 (526)
T d1p0ia_ 162 --NMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLLSPGSHSLFTRAILQSGSF 224 (526)
T ss_dssp --CHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHCGGGGGGCSEEEEESCCT
T ss_pred --cccccchhhhhhhHHHHHHHhhcCchheeehhhccccceeeccccCCcchhhhhhhhcccccc
Confidence 344889999999998862 2599999999999999998877653 224899999988654
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.68 E-value=8.2e-08 Score=102.96 Aligned_cols=189 Identities=9% Similarity=-0.030 Sum_probs=104.6
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
...|.+||+.++++... ++....+..++|||||+. |+ ++. +...|.++|+
T Consensus 41 dg~v~vwD~~t~~~~~~--l~~g~~~~~vafSPDGk~----l~-~~~--------------~d~~v~vwd~--------- 90 (426)
T d1hzua2 41 AGQIALVDGDSKKIVKV--IDTGYAVHISRMSASGRY----LL-VIG--------------RDARIDMIDL--------- 90 (426)
T ss_dssp TTEEEEEETTTCSEEEE--EECCSSEEEEEECTTSCE----EE-EEE--------------TTSEEEEEET---------
T ss_pred CCEEEEEECCCCcEEEE--EeCCCCeeEEEECCCCCE----EE-EEe--------------CCCCEEEEEc---------
Confidence 37899999999987654 333446788999999997 65 442 2336888887
Q ss_pred hhhhcCCCCCCCee---ecC---CCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceee
Q 003886 352 LELKESSSEDLPVV---NLT---ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 425 (789)
Q Consensus 352 ~~~~~~~~~~~~~~---~Lt---~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~ 425 (789)
++++.. .+. .+.+...++.|||||++|+...... ..+.++|..++...........
T Consensus 91 --------~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~----------~~v~i~d~~~~~~~~~~~~~~~ 152 (426)
T d1hzua2 91 --------WAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP----------PQFAIMDGETLEPKQIVSTRGM 152 (426)
T ss_dssp --------TSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEES----------SEEEEEETTTCCEEEEEECCEE
T ss_pred --------cCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCC----------CeEEEEcCCccceeEEeeccCC
Confidence 444422 222 2234467899999999987655332 3588889877654322211111
Q ss_pred EEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCc---EEEecCCCCCceeEEeeecCCEE
Q 003886 426 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGE---LLRITPAESNFSWSLLTLDGDNI 502 (789)
Q Consensus 426 v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~---~~~lt~~~~~~~~~~~s~dg~~l 502 (789)
.+.. ..+. .......+..++|++.+++.... ...+..++..++. ...+.... ......++++++++
T Consensus 153 ~~~~------~~~~--~~~~~~~i~~s~d~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~ 221 (426)
T d1hzua2 153 TVDT------QTYH--PEPRVAAIIASHEHPEFIVNVKE--TGKVLLVNYKDIDNLTVTSIGAAP-FLADGGWDSSHRYF 221 (426)
T ss_dssp CSSS------CCEE--SCCCEEEEEECSSSSEEEEEETT--TTEEEEEECSSSSSCEEEEEECCS-SEEEEEECTTSCEE
T ss_pred Cccc------eeec--CCCceeEEEECCCCCEEEEecCC--CCeEEEEEeccccceeeEEeccCC-ccEeeeECCCCcEE
Confidence 0000 0000 00011123456777766554332 2345555554443 22232222 23445788888887
Q ss_pred EEEEeCCCCCCeEEEEeecc
Q 003886 503 IAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 503 ~~~~ss~~~p~~i~~~~~~~ 522 (789)
+....... .+.+.+...
T Consensus 222 ~~a~~~~~---~~~~~~~~~ 238 (426)
T d1hzua2 222 MTAANNSN---KVAVIDSKD 238 (426)
T ss_dssp EEEETTCS---EEEEEETTT
T ss_pred Eeeeeccc---ceeeeeccc
Confidence 77665443 244555443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.67 E-value=4.8e-06 Score=86.72 Aligned_cols=58 Identities=10% Similarity=-0.007 Sum_probs=35.2
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEec--CCCccccccCCCcccceeecCCCCEEEEEe
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHV--PQTVHGSVYADGWFEGISWNSDETLIAYVA 226 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~g~v~~d~~~~~~~wSpDg~~la~~~ 226 (789)
.+..++||||+.|+.+.. +.-..|.++..+........ .... ..+..+|||+.++.+.
T Consensus 42 ~s~la~s~d~~~ly~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~p----------~~v~~~~~~~~~~v~~ 101 (365)
T d1jofa_ 42 ISWMTFDHERKNIYGAAM---KKWSSFAVKSPTEIVHEASHPIGGHP----------RANDADTNTRAIFLLA 101 (365)
T ss_dssp CSEEEECTTSSEEEEEEB---TEEEEEEEEETTEEEEEEEEECCSSG----------GGGCTTSCCEEEEEEE
T ss_pred CCEEEEcCCCCEEEEEeC---CcEEEEEEeCCCCeEEEeeecCCCCc----------EEEEECCCCCEEEEEE
Confidence 456889999999876543 23345666644444333322 1222 5788999998765543
|
| >d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Acetylcholinesterase-like domain: Acetylcholinesterase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.65 E-value=9.3e-09 Score=114.34 Aligned_cols=130 Identities=20% Similarity=0.185 Sum_probs=88.5
Q ss_pred CCCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCch-hhHHHHH-HHHHCCcEEEEEcCC-CCCCCCchh-hccCCCC
Q 003886 571 GAQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLS-SYSKSLA-FLSSVGYSLLIVNYR-GSLGFGEEA-LQSLPGK 646 (789)
Q Consensus 571 ~~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~-~~~~~~~-~la~~Gy~V~~~d~r-Gs~G~G~~~-~~~~~~~ 646 (789)
.|.+.|. ++.|.. ...++.|++|+||||....... ....... ..+..+.+|+.+||| |.-|+-... .....++
T Consensus 94 EDCL~Ln--I~~P~~-~~~~~lPV~v~ihGG~~~~gs~~~~~~~~~~~~~~~~vvvVt~nYRlg~~Gfl~~~~~~~~~gN 170 (542)
T d2ha2a1 94 EDCLYLN--VWTPYP-RPASPTPVLIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFGFLALPGSREAPGN 170 (542)
T ss_dssp SCCCEEE--EEEESS-CCSSCEEEEEEECCSTTTCCCTTSGGGCTHHHHHHHCCEEEEECCCCHHHHHCCCTTCSSCCSC
T ss_pred CcCCEEE--EEecCC-CCCCCCcEEEEEEECccccccCcccccCchhhhhhccceeEeeeeeccceeeecccccccCCCc
Confidence 3665555 666763 2457899999999987643222 1111223 334678999999999 433442211 1122333
Q ss_pred CCcccHHHHHHHHHHHHHcC---CCCCccEEEEEcCccHHHHHHHHHhC--CCceeEEEEeCCcc
Q 003886 647 VGSQDVNDVLTAIDHVIDMG---LANPSKVTVVGGSHGGFLTTHLIGQA--PDKFVAAAARNPLC 706 (789)
Q Consensus 647 ~~~~~~~D~~~~i~~l~~~~---~~d~~rv~l~G~S~GG~~a~~~~~~~--p~~~~a~v~~~pv~ 706 (789)
.-+.|+..|++|+.++. .-|+++|.|+|+|.||..+..++... ..+|..+|+.++..
T Consensus 171 ---~Gl~Dq~~AL~WV~~nI~~FGGDP~~VTi~G~SAGa~sv~~ll~sp~~~~LF~~aI~~SG~~ 232 (542)
T d2ha2a1 171 ---VGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHILSLPSRSLFHRAVLQSGTP 232 (542)
T ss_dssp ---HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHSHHHHTTCSEEEEESCCS
T ss_pred ---CCcccHHHHHHHHHHHHHHhhcCccccccccccccccchhhhhhhhhhhHHhhhheeecccc
Confidence 34889999999999862 25999999999999999999877642 25899999998754
|
| >d2h7xa1 c.69.1.22 (A:9-291) Picromycin polyketide synthase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Picromycin polyketide synthase species: Streptomyces venezuelae [TaxId: 54571]
Probab=98.60 E-value=2.4e-08 Score=100.78 Aligned_cols=178 Identities=14% Similarity=0.123 Sum_probs=98.6
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHH-HHHHHHcC
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMG 666 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~ 666 (789)
.....|.+|++||...+.....|......|.. ++.|+++|++| +|.+... .......+++++.+. ++.+...
T Consensus 56 ~~~~~~~l~c~~~~~~~g~~~~y~~la~~L~~-~~~V~al~~pG---~~~~~~~--~~~~~~~s~~~~a~~~~~~i~~~- 128 (283)
T d2h7xa1 56 RAEGRAVLVGCTGTAANGGPHEFLRLSTSFQE-ERDFLAVPLPG---YGTGTGT--GTALLPADLDTALDAQARAILRA- 128 (283)
T ss_dssp --CCCCEEEEECCCCTTCSTTTTHHHHHTTTT-TCCEEEECCTT---CCBC-----CBCCEESSHHHHHHHHHHHHHHH-
T ss_pred CCCCCceEEEeCCCCCCCCHHHHHHHHHhcCC-CceEEEEeCCC---CCCCCCC--ccccccCCHHHHHHHHHHHHHHh-
Confidence 34567889999984333345567777777754 58999999987 5443211 112222346666554 3445443
Q ss_pred CCCCccEEEEEcCccHHHHHHHHHhC----CCceeEEEEeCCccchhhhhcCCCCCcch--hhhhccCccccccCCCCCh
Q 003886 667 LANPSKVTVVGGSHGGFLTTHLIGQA----PDKFVAAAARNPLCNLALMVGTTDIPDWC--YVESYGSKGKDSFTESPSV 740 (789)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~~~~~----p~~~~a~v~~~pv~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 740 (789)
.+..++.|+|||+||.++..+|.+. ++.+.++|+.++........ ...+. ....+.. ...... ..
T Consensus 129 -~~~~P~vL~GhS~GG~vA~e~A~~l~~~~g~~v~~LvL~d~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~-~~ 199 (283)
T d2h7xa1 129 -AGDAPVVLLGHSGGALLAHELAFRLERAHGAPPAGIVLVDPYPPGHQEP----IEVWSRQLGEGLFA---GELEPM-SD 199 (283)
T ss_dssp -HTTSCEEEEEETHHHHHHHHHHHHHHHHHSCCCSEEEEESCCCTTCCHH----HHHTHHHHHHHHHH---TCSSCC-CH
T ss_pred -cCCCceEEEEeccchHHHHHHHHhhHHHcCCCceEEEEecCCccccccc----hhhhhhhhHHHhhc---cccccc-cc
Confidence 3456799999999999999888754 45788888877643210000 00000 0000000 001111 11
Q ss_pred hhH---HHHHhcCccccCCCCCCCEEEEEeCCCCCCChHHHHHH
Q 003886 741 EDL---TRFHSKSPISHISKVKTPTIFLLGAQDLRVPVSNGLQV 781 (789)
Q Consensus 741 ~~~---~~~~~~sp~~~~~~i~~P~Lii~G~~D~~vp~~~~~~l 781 (789)
... ..+.+.........+++|+|+++|++|..++......+
T Consensus 200 ~~l~a~~~~~~~~~~~~~~~~~~Pvl~i~g~~d~~~~~~~~~~w 243 (283)
T d2h7xa1 200 ARLLAMGRYARFLAGPRPGRSSAPVLLVRASEPLGDWQEERGDW 243 (283)
T ss_dssp HHHHHHHHHHHHHHSCCCCCCCSCEEEEEESSCSSCCCGGGCCC
T ss_pred HHHHHHHHHHHHHhhccccccCCCeEEEEeCCCCCCCHHHHHHH
Confidence 111 11111111223567899999999999999988765443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.57 E-value=7.7e-06 Score=83.34 Aligned_cols=256 Identities=14% Similarity=0.089 Sum_probs=140.3
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCeEEEEec-CCceeEEE-ecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 157 SAVVPSPSGSKLLVVRNPENESPIQFELWS-QSQLEKEF-HVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~~~~~~~~i~~-~~~~~~~~-~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
.-|+|.|+|+ |+|+... ...++.+.. +++..... ...... .+++++|||+.++......
T Consensus 43 EG~~~D~~G~-Ly~~D~~---~g~I~ri~p~g~~~~~~~~~~~~~p----------~gla~~~dG~l~va~~~~~----- 103 (319)
T d2dg1a1 43 EGLNFDRQGQ-LFLLDVF---EGNIFKINPETKEIKRPFVSHKANP----------AAIKIHKDGRLFVCYLGDF----- 103 (319)
T ss_dssp EEEEECTTSC-EEEEETT---TCEEEEECTTTCCEEEEEECSSSSE----------EEEEECTTSCEEEEECTTS-----
T ss_pred EeCEECCCCC-EEEEECC---CCEEEEEECCCCeEEEEEeCCCCCe----------eEEEECCCCCEEEEecCCC-----
Confidence 4689999997 7666432 235777774 33333332 222222 5899999997443211110
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEecc-CCCCCCccceEEEeeCCCCCccEE
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVK-GIPKSLSVGQVVWAPLNEGLHQYL 313 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~-~~~~~~~~~~~~wSPDg~~~~~~l 313 (789)
.....|+.++..++....+. ...........++.|||+ |
T Consensus 104 -----------------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-----l 143 (319)
T d2dg1a1 104 -----------------------------------KSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-----F 143 (319)
T ss_dssp -----------------------------------SSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-----E
T ss_pred -----------------------------------ccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccc-----e
Confidence 02356777777777665542 112223456789999996 6
Q ss_pred EEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 314 ~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
+++...... .+....+|+++. +++..+.+.........++|||||++|++....
T Consensus 144 ~vtd~~~~~--------~~~~g~v~~~~~-----------------dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~- 197 (319)
T d2dg1a1 144 YFTDFRGYS--------TNPLGGVYYVSP-----------------DFRTVTPIIQNISVANGIALSTDEKVLWVTETT- 197 (319)
T ss_dssp EEEECCCBT--------TBCCEEEEEECT-----------------TSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG-
T ss_pred eeccccccc--------ccCcceeEEEec-----------------ccceeEEEeeccceeeeeeeccccceEEEeccc-
Confidence 666432211 112346899987 566666665544445678999999988776533
Q ss_pred CCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 394 ~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
..+|+++|++..+........ .+.. ... .+. ....+++.+||+ ||++.... ..|.++
T Consensus 198 ---------~~~I~~~d~~~~g~~~~~~~~-~~~~---~~~--~~~-----~PdGl~vD~~G~-l~Va~~~~--g~V~~~ 254 (319)
T d2dg1a1 198 ---------ANRLHRIALEDDGVTIQPFGA-TIPY---YFT--GHE-----GPDSCCIDSDDN-LYVAMYGQ--GRVLVF 254 (319)
T ss_dssp ---------GTEEEEEEECTTSSSEEEEEE-EEEE---ECC--SSS-----EEEEEEEBTTCC-EEEEEETT--TEEEEE
T ss_pred ---------CCceEEEEEcCCCceeccccc-eeee---ccC--Ccc-----ceeeeeEcCCCC-EEEEEcCC--CEEEEE
Confidence 347999998765432111110 1000 000 000 112456778887 66654333 357788
Q ss_pred ECCCCcEEEecCCCC------CceeEEeeecCCEEEEEEeCCCCCC--eEEEEee
Q 003886 474 NVSSGELLRITPAES------NFSWSLLTLDGDNIIAVSSSPVDVP--QVKYGYF 520 (789)
Q Consensus 474 dl~tg~~~~lt~~~~------~~~~~~~s~dg~~l~~~~ss~~~p~--~i~~~~~ 520 (789)
|.++..+.++.-... ......+.++++.++.+..+...+. .||.++.
T Consensus 255 ~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~ 309 (319)
T d2dg1a1 255 NKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 309 (319)
T ss_dssp CTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred CCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeC
Confidence 875444444532210 1223456666677766665544333 4555554
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.56 E-value=6.9e-06 Score=83.61 Aligned_cols=167 Identities=13% Similarity=0.114 Sum_probs=95.0
Q ss_pred CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccc
Q 003886 268 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKS 347 (789)
Q Consensus 268 ~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~ 347 (789)
.+..+..|.+||+.+++..... ...........|+|+++. ++..+ .+..|+++|+.
T Consensus 176 ~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~---------------~d~~i~i~d~~---- 231 (355)
T d1nexb2 176 SGSYDNTLIVWDVAQMKCLYIL-SGHTDRIYSTIYDHERKR----CISAS---------------MDTTIRIWDLE---- 231 (355)
T ss_dssp EEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEETTTTE----EEEEE---------------TTSCEEEEETT----
T ss_pred eecccceeeeeecccccceeee-ecccccccccccccccee----eeccc---------------ccceEEeeecc----
Confidence 3445578899999888765442 233445678899999987 66655 22368888872
Q ss_pred hhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEE
Q 003886 348 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~ 427 (789)
.......+..+...+...+|+ ++.|+..+.+ ..|++||+.+.... +....
T Consensus 232 ------------~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~d-----------g~i~iwd~~~~~~~-~~~~~---- 281 (355)
T d1nexb2 232 ------------NGELMYTLQGHTALVGLLRLS--DKFLVSAAAD-----------GSIRGWDANDYSRK-FSYHH---- 281 (355)
T ss_dssp ------------TCCEEEEECCCSSCCCEEEEC--SSEEEEECTT-----------SEEEEEETTTCCEE-EEEEC----
T ss_pred ------------ccccccccccccccccccccc--cceeeeeecc-----------ccccccccccccee-ccccc----
Confidence 223345566666666666665 5677665543 25899998764321 10000
Q ss_pred eeeeccCCCCCccccccCCCC-CccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEe-cCCCCCceeEEeeecCCEEEEE
Q 003886 428 PVVQCAEGDCFPGLYSSSILS-NPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRI-TPAESNFSWSLLTLDGDNIIAV 505 (789)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~-~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~l-t~~~~~~~~~~~s~dg~~l~~~ 505 (789)
..+.. ..++++++ +++++. ++ .|..+|+.+|+..+. ...+. .....++.+++.++++
T Consensus 282 ----------------~~~~~~~~~~~~~~-~l~~g~-d~--~i~vwd~~tg~~~~~~~~~~~-~~V~~v~~~~~~~~~~ 340 (355)
T d1nexb2 282 ----------------TNLSAITTFYVSDN-ILVSGS-EN--QFNIYNLRSGKLVHANILKDA-DQIWSVNFKGKTLVAA 340 (355)
T ss_dssp ----------------TTCCCCCEEEECSS-EEEEEE-TT--EEEEEETTTCCBCCSCTTTTC-SEEEEEEEETTEEEEE
T ss_pred ----------------CCceEEEEEcCCCC-EEEEEe-CC--EEEEEECCCCCEEEEEecCCC-CCEEEEEEcCCeEEEE
Confidence 01222 34567776 545543 44 466668888886532 22222 1223344455666665
Q ss_pred EeCC
Q 003886 506 SSSP 509 (789)
Q Consensus 506 ~ss~ 509 (789)
.+..
T Consensus 341 ~s~d 344 (355)
T d1nexb2 341 VEKD 344 (355)
T ss_dssp EESS
T ss_pred EECC
Confidence 5544
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=98.56 E-value=7.8e-05 Score=67.23 Aligned_cols=293 Identities=11% Similarity=0.141 Sum_probs=169.5
Q ss_pred HHHHHHHHHHhhcCccccceEEEecCCCCCceEEEE-EeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccE
Q 003886 79 YASLSKLLQDFTNISSIDKAWTFNSGNGNGTQAMFS-ISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGAS 157 (789)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~~~~~~~~~spdg~~v~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~ 157 (789)
|.++++.++++..+|-..-.... |+..+.|. .++. .-++... .+++.++||..|. ....
T Consensus 1 yseivk~lE~lv~ip~Y~v~Gkl-----~~d~ll~~~~seG-------~vni~~l----~g~~~vkLtkePI----~~~~ 60 (313)
T d2hu7a1 1 FSRIVRDVERLIAVEKYSLQGVV-----DGDKLLVVGFSEG-------SVNAYLY----DGGETVKLNREPI----NSVL 60 (313)
T ss_dssp CHHHHHHHHHHHHSCEEEEEEEE-----TTTEEEEEEEETT-------EEEEEEE----SSSSCEECCSSCC----SEEC
T ss_pred ChhHHHHHHHHhcccceeEEEEe-----cCCcEEEEEeccc-------eEEEEEE----eCCEEEEEecccc----cCcC
Confidence 35678889999888876533332 23334443 3332 2234442 4567788988774 2233
Q ss_pred EEEeCCCCCeEEEEecCCCCCC--eEEEEecC--CceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 158 AVVPSPSGSKLLVVRNPENESP--IQFELWSQ--SQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~~~~--~~~~i~~~--~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
.| -+.=..|.|+++...+.. .++.+... |+..+ +..+..+ .-++-.-|++.|+|+....
T Consensus 61 ~P--k~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~-i~spk~v----------RI~S~~yddk~vvF~Gase---- 123 (313)
T d2hu7a1 61 DP--HYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQR-LEAVKPM----------RILSGVDTGEAVVFTGATE---- 123 (313)
T ss_dssp EE--CTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEE-CTTSCSB----------EEEEEEECSSCEEEEEECS----
T ss_pred CC--ccCcceEEEEeehhcCcceeeEEEEccCCCCeeeE-ecCCceE----------EEEEeeecCceEEEecccC----
Confidence 34 444458999998765433 35555522 44333 2222222 3466677999999985532
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEE
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYL 313 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l 313 (789)
....||++ ++|+.+.|. ++...+++=.=.|+. |
T Consensus 124 -------------------------------------d~~~LYvi--egGklrkL~----~vPpFsFVtDI~~d~----I 156 (313)
T d2hu7a1 124 -------------------------------------DRVALYAL--DGGGLRELA----RLPGFGFVSDIRGDL----I 156 (313)
T ss_dssp -------------------------------------SCEEEEEE--ETTEEEEEE----EESSCEEEEEEETTE----E
T ss_pred -------------------------------------CceEEEEE--eCCceeeec----cCCCcceEEeccCCe----E
Confidence 12456665 588888883 122223333334555 5
Q ss_pred EEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 314 ~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
+=.+-- ..++..++..|+ .+|..+.+|...++..++..+|+.|- ++.-+
T Consensus 157 ~G~g~~-----------~g~~~sfF~adl-----------------~SG~lri~tpkeGS~~~ay~~~gnKV---~sdyE 205 (313)
T d2hu7a1 157 AGLGFF-----------GGGRVSLFTSNL-----------------SSGGLRVFDSGEGSFSSASISPGMKV---TAGLE 205 (313)
T ss_dssp EEEEEE-----------ETTEEEEEEEET-----------------TTEEEEEECCSSEEEEEEEECTTSCE---EEEEE
T ss_pred EEEeee-----------cCCcceEEEEec-----------------ccCCEEEecCCCCcccceeEccCcee---eeccC
Confidence 544421 223446999998 78899999999999999999998875 22211
Q ss_pred CCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCcc--ccccCCCCCc---cccCCCEEEEEEEeCCeE
Q 003886 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPG--LYSSSILSNP---WLSDGCTMLLSSIWGSSQ 468 (789)
Q Consensus 394 ~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g--~~~~~~~~~~---ws~Dg~~l~~~~~~~~~~ 468 (789)
+ .+...+..+|+.++.-..+ +||+ +|........ +.||++ |++.+..+|+.
T Consensus 206 t------~gEsywit~D~~s~~yerv-----------------e~P~kd~~sy~p~~I~~~~Y~Pdd~-L~iiakrdG~s 261 (313)
T d2hu7a1 206 T------AREARLVTVDPRDGSVEDL-----------------ELPSKDFSSYRPTAITWLGYLPDGR-LAVVARREGRS 261 (313)
T ss_dssp E------SSCEEEEEECTTTCCEEEC-----------------CCSSCHHHHHCCSEEEEEEECTTSC-EEEEEEETTEE
T ss_pred C------CCceEEEEEecccCceeee-----------------ecCcccceeecceEEEeeeeCCCCc-EEEEEecCCch
Confidence 1 0122344567765443211 1222 1111112223 579998 55666788888
Q ss_pred EEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEE
Q 003886 469 VIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYG 518 (789)
Q Consensus 469 ~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~ 518 (789)
.|+. .|+. +....+.. .....-++.++++.++..+|+.|...
T Consensus 262 ~lF~----nGk~--in~p~G~~--~gat~i~~~iyfshsSL~tP~kI~~~ 303 (313)
T d2hu7a1 262 AVFI----DGER--VEAPQGNH--GRVVLWRGKLVTSHTSLSTPPRIVSL 303 (313)
T ss_dssp EEEE----TTEE--ECCCSSEE--EEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred heee----cceE--ecCCCCcc--cceEEECCEEEEeecccCCCceeEEc
Confidence 8874 4543 33333322 23444578999999999999988643
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.55 E-value=9.1e-06 Score=84.53 Aligned_cols=31 Identities=6% Similarity=-0.273 Sum_probs=23.4
Q ss_pred CCCcccc-CCCEEEEEEEeCCeEEEEEEECCC
Q 003886 447 LSNPWLS-DGCTMLLSSIWGSSQVIISVNVSS 477 (789)
Q Consensus 447 ~~~~ws~-Dg~~l~~~~~~~~~~~l~~~dl~t 477 (789)
..+.++| ||++||+.....+...+|+++-.+
T Consensus 312 ~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 312 NAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp CCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred cEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 3567787 899888876677888888887544
|
| >d2dsta1 c.69.1.39 (A:2-123) Hypothetical protein TTHA1544 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: TTHA1544-like domain: Hypothetical protein TTHA1544 species: Thermus thermophilus [TaxId: 274]
Probab=98.40 E-value=6.3e-08 Score=82.93 Aligned_cols=94 Identities=15% Similarity=0.135 Sum_probs=64.8
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD 651 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~ 651 (789)
+|.+++.... ..-|.||++||.+. .| ...| +++|.|+++|+|| +|.+... ...
T Consensus 9 ~G~~l~y~~~--------G~G~pvlllHG~~~-----~w---~~~L-~~~yrvi~~DlpG---~G~S~~p-------~~s 61 (122)
T d2dsta1 9 YGLNLVFDRV--------GKGPPVLLVAEEAS-----RW---PEAL-PEGYAFYLLDLPG---YGRTEGP-------RMA 61 (122)
T ss_dssp TTEEEEEEEE--------CCSSEEEEESSSGG-----GC---CSCC-CTTSEEEEECCTT---STTCCCC-------CCC
T ss_pred CCEEEEEEEE--------cCCCcEEEEecccc-----cc---cccc-cCCeEEEEEeccc---cCCCCCc-------ccc
Confidence 5666654332 23577889998432 22 1223 5789999999988 6665321 234
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCCC
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAPD 694 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p~ 694 (789)
.+++.+.+..+++. ++.++..|+|||+||.+++++++..+.
T Consensus 62 ~~~~a~~i~~ll~~--L~i~~~~viG~S~Gg~ia~~laa~~~~ 102 (122)
T d2dsta1 62 PEELAHFVAGFAVM--MNLGAPWVLLRGLGLALGPHLEALGLR 102 (122)
T ss_dssp HHHHHHHHHHHHHH--TTCCSCEEEECGGGGGGHHHHHHTTCC
T ss_pred cchhHHHHHHHHHH--hCCCCcEEEEeCccHHHHHHHHhhccc
Confidence 66777777777776 567889999999999999999986543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.38 E-value=4e-05 Score=76.84 Aligned_cols=238 Identities=14% Similarity=0.101 Sum_probs=134.8
Q ss_pred EEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCc
Q 003886 157 SAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTF 236 (789)
Q Consensus 157 ~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~ 236 (789)
..|.|.+....|+|+--. ...++.++..+.......++... .++.+.+||+.++- .
T Consensus 21 Egp~wd~~~~~l~wvDi~---~~~I~r~d~~~g~~~~~~~~~~~----------~~i~~~~dg~l~va-~---------- 76 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNIL---ERELHELHLASGRKTVHALPFMG----------SALAKISDSKQLIA-S---------- 76 (295)
T ss_dssp EEEEEETTTTEEEEEEGG---GTEEEEEETTTTEEEEEECSSCE----------EEEEEEETTEEEEE-E----------
T ss_pred eCCeEECCCCEEEEEECC---CCEEEEEECCCCeEEEEECCCCc----------EEEEEecCCCEEEE-E----------
Confidence 369999999999998533 23588887444444555655544 67888889865542 1
Q ss_pred cCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC---CccceEEEeeCCCCCccEE
Q 003886 237 SLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS---LSVGQVVWAPLNEGLHQYL 313 (789)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~---~~~~~~~wSPDg~~~~~~l 313 (789)
...|+++|.++|+.+.+...... .........|+|+ |
T Consensus 77 -----------------------------------~~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-----i 116 (295)
T d2ghsa1 77 -----------------------------------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-----L 116 (295)
T ss_dssp -----------------------------------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-----E
T ss_pred -----------------------------------eCccEEeecccceeeEEeeeecCCCcccceeeEECCCCC-----E
Confidence 13589999999998876322221 2456788999997 6
Q ss_pred EEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCC
Q 003886 314 VFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKS 393 (789)
Q Consensus 314 ~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~ 393 (789)
+|........ .....+|+++ .++.+.+.........+.||||++.+++.....
T Consensus 117 w~~~~~~~~~--------~~~g~l~~~~-------------------~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~ 169 (295)
T d2ghsa1 117 WIGTMGRKAE--------TGAGSIYHVA-------------------KGKVTKLFADISIPNSICFSPDGTTGYFVDTKV 169 (295)
T ss_dssp EEEEEETTCC--------TTCEEEEEEE-------------------TTEEEEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred EEEecccccc--------ccceeEeeec-------------------CCcEEEEeeccCCcceeeecCCCceEEEeeccc
Confidence 7765432211 1123455554 234444444444456789999999988876543
Q ss_pred CCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 394 SVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 394 ~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
..|++++++....... ........ .+..... ...+....+|. |++..-..+ .|+++
T Consensus 170 ----------~~I~~~~~d~~~~~~~-~~~~~~~~---~~~~~g~-------pdG~~vD~~Gn-lWva~~~~g--~V~~~ 225 (295)
T d2ghsa1 170 ----------NRLMRVPLDARTGLPT-GKAEVFID---STGIKGG-------MDGSVCDAEGH-IWNARWGEG--AVDRY 225 (295)
T ss_dssp ----------CEEEEEEBCTTTCCBS-SCCEEEEE---CTTSSSE-------EEEEEECTTSC-EEEEEETTT--EEEEE
T ss_pred ----------ceeeEeeecccccccc-cceEEEec---cCccccc-------ccceEEcCCCC-EEeeeeCCC--ceEEe
Confidence 4699988765332111 11111111 1111111 12445667776 655433233 57888
Q ss_pred ECCCCcEEEecCCCCCceeEEee-ecCCEEEEEEeCC
Q 003886 474 NVSSGELLRITPAESNFSWSLLT-LDGDNIIAVSSSP 509 (789)
Q Consensus 474 dl~tg~~~~lt~~~~~~~~~~~s-~dg~~l~~~~ss~ 509 (789)
|.++..+..+.-.........|- +|.+.|+.+..+.
T Consensus 226 dp~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~~ 262 (295)
T d2ghsa1 226 DTDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 262 (295)
T ss_dssp CTTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred cCCCcEeeEecCCCCceEEEEEeCCCCCEEEEEECCc
Confidence 87555555554332222333343 4566777665543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.36 E-value=5.6e-05 Score=76.02 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=36.5
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCE
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL 221 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~ 221 (789)
...++++|||+ |+++ +. ...+++.+..+++...+....... .+++|+|||+.
T Consensus 30 ~e~iAv~pdG~-l~vt-~~--~~~~I~~i~p~g~~~~~~~~~~~~----------~gla~~~dG~l 81 (302)
T d2p4oa1 30 LENLASAPDGT-IFVT-NH--EVGEIVSITPDGNQQIHATVEGKV----------SGLAFTSNGDL 81 (302)
T ss_dssp EEEEEECTTSC-EEEE-ET--TTTEEEEECTTCCEEEEEECSSEE----------EEEEECTTSCE
T ss_pred cCCEEECCCCC-EEEE-eC--CCCEEEEEeCCCCEEEEEcCCCCc----------ceEEEcCCCCe
Confidence 45789999997 4443 33 234688888667766666655554 78999999983
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.35 E-value=2.7e-05 Score=78.98 Aligned_cols=268 Identities=11% Similarity=0.037 Sum_probs=137.8
Q ss_pred cccEEEEeCCCCCeEEEEecCCC----CCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPEN----ESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEP 229 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~ 229 (789)
.+...|+|.|||+ |+++..... ...+++.++..+.....+..+.... ..+.-.++.+++||+.|+.. ..
T Consensus 18 ~g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~----~~g~P~Gl~~~~dg~~l~va-d~- 90 (314)
T d1pjxa_ 18 PGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNG----YGGIPAGCQCDRDANQLFVA-DM- 90 (314)
T ss_dssp TTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETT----EECCEEEEEECSSSSEEEEE-ET-
T ss_pred CCCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEECCcccc----CCCcceeEEEeCCCCEEEEE-EC-
Confidence 3466799999997 555543321 1235777773333333332211100 00011478999999876553 21
Q ss_pred CCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC--C-ccceEEEeeCC
Q 003886 230 SPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS--L-SVGQVVWAPLN 306 (789)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~--~-~~~~~~wSPDg 306 (789)
...|.+++.+++....+...... . ....+++.|||
T Consensus 91 ------------------------------------------~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G 128 (314)
T d1pjxa_ 91 ------------------------------------------RLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEG 128 (314)
T ss_dssp ------------------------------------------TTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTS
T ss_pred ------------------------------------------CCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCC
Confidence 24588889877765544211111 1 34678999999
Q ss_pred CCCccEEEEEeecCCcee-eeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCC-
Q 003886 307 EGLHQYLVFVGWSSETRK-LGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGK- 384 (789)
Q Consensus 307 ~~~~~~l~f~~~~~~~~~-~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~- 384 (789)
+ |+|+........ ............||+++. + ++...+..........+|+||++
T Consensus 129 ~-----lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-----------------d-g~~~~~~~~~~~pNGi~~~~d~d~ 185 (314)
T d1pjxa_ 129 N-----LWITAPAGEVAPADYTRSMQEKFGSIYCFTT-----------------D-GQMIQVDTAFQFPNGIAVRHMNDG 185 (314)
T ss_dssp C-----EEEEECBCBCTTSCCCBTTSSSCEEEEEECT-----------------T-SCEEEEEEEESSEEEEEEEECTTS
T ss_pred C-----EEEecCccCcccccccceeccCCceEEEEee-----------------c-CceeEeeCCcceeeeeEECCCCCc
Confidence 6 777642211000 000000112346888885 3 33444433322344578999875
Q ss_pred ---EEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEE
Q 003886 385 ---FLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLS 461 (789)
Q Consensus 385 ---~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~ 461 (789)
+|++ +.. ...+|+++|+...+.. ....+.. ..+... . .....+++.++|+ ||++
T Consensus 186 ~~~~lyv-~d~---------~~~~i~~~d~~~~g~~----~~~~~~~--~~~~~~--~----~~pdGiavD~~Gn-lyVa 242 (314)
T d1pjxa_ 186 RPYQLIV-AET---------PTKKLWSYDIKGPAKI----ENKKVWG--HIPGTH--E----GGADGMDFDEDNN-LLVA 242 (314)
T ss_dssp CEEEEEE-EET---------TTTEEEEEEEEETTEE----EEEEEEE--ECCCCS--S----CEEEEEEEBTTCC-EEEE
T ss_pred ceeEEEE-Eee---------cccceEEeeccCcccc----ceeeEEE--Eccccc--c----ccceeeEEecCCc-EEEE
Confidence 4444 332 2357999987654321 0011111 000000 0 0112456778887 6655
Q ss_pred EEeCCeEEEEEEECCCCcEEE-ecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeec
Q 003886 462 SIWGSSQVIISVNVSSGELLR-ITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 462 ~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~ 521 (789)
... ...|+++|.++|+... +...........|.+|++.|+.+.+.. ..|++++..
T Consensus 243 ~~~--~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~---g~i~~~~~~ 298 (314)
T d1pjxa_ 243 NWG--SSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHEN---NAVWKFEWQ 298 (314)
T ss_dssp EET--TTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTT---TEEEEEECS
T ss_pred EcC--CCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCC---CcEEEEECC
Confidence 332 3468888988887543 433222334467888888887766543 358887754
|
| >d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Fatty acid synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=3.3e-07 Score=90.97 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=60.6
Q ss_pred CCCCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHH-HHHHHHHcC
Q 003886 588 DCSCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLT-AIDHVIDMG 666 (789)
Q Consensus 588 ~~~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~-~i~~l~~~~ 666 (789)
.+++.| ||++||++++ ...|......| ++.|+++|.+| +|... .++++.+ .++.+.+.
T Consensus 22 ~~~~~P-l~l~Hg~~gs--~~~~~~l~~~L---~~~v~~~d~~g---~~~~~-----------~~~~~a~~~~~~~~~~- 80 (286)
T d1xkta_ 22 QSSERP-LFLVHPIEGS--TTVFHSLASRL---SIPTYGLQCTR---AAPLD-----------SIHSLAAYYIDCIRQV- 80 (286)
T ss_dssp CCCSCC-EEEECCTTCC--CGGGHHHHHTC---SSCEEEECCCT---TSCCS-----------CHHHHHHHHHHHHHHH-
T ss_pred CCCCCe-EEEECCCCcc--HHHHHHHHHHc---CCeEEEEeCCC---CCCCC-----------CHHHHHHHHHHHHHHh-
Confidence 344556 6789998886 45666555444 78999999987 44321 1333332 22333333
Q ss_pred CCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCC
Q 003886 667 LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNP 704 (789)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~p 704 (789)
.+.+++.|+|||+||.++..+|.++|++.+.++....
T Consensus 81 -~~~~~~~lvGhS~Gg~vA~~~A~~~p~~~~~v~~l~~ 117 (286)
T d1xkta_ 81 -QPEGPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNS 117 (286)
T ss_dssp -CCSSCCEEEEETHHHHHHHHHHHHHHHC------CCE
T ss_pred -cCCCceEEeecCCccHHHHHHHHHHHHcCCCceeEEE
Confidence 4567899999999999999999999998887665543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.31 E-value=6.8e-05 Score=79.56 Aligned_cols=232 Identities=10% Similarity=0.125 Sum_probs=130.1
Q ss_pred cceeecCCCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccC
Q 003886 211 EGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKG 290 (789)
Q Consensus 211 ~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~ 290 (789)
.++++||||+++||...... .....|+++|+++|+.....
T Consensus 128 ~~~~~Spd~~~la~s~d~~G---------------------------------------~e~~~l~v~Dl~tg~~~~~~- 167 (430)
T d1qfma1 128 RGYAFSEDGEYFAYGLSASG---------------------------------------SDWVTIKFMKVDGAKELPDV- 167 (430)
T ss_dssp EEEEECTTSSEEEEEEEETT---------------------------------------CSCEEEEEEETTTTEEEEEE-
T ss_pred cceEecCCCCEEEEEecccc---------------------------------------CchheeEEeccCcceecccc-
Confidence 46789999999999865431 13478999999999865431
Q ss_pred CCCCCccceEEEeeCCCCCccEEEEEeecCCc-eeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCC
Q 003886 291 IPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET-RKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE 369 (789)
Q Consensus 291 ~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~-~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~ 369 (789)
+ .....+.++|++|++. |+|+...... ...+.....+++..+|+..+.. ...+-..+..
T Consensus 168 i-~~~~~~~~~W~~D~~~----~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt---------------~~~~d~~v~~ 227 (430)
T d1qfma1 168 L-ERVKFSCMAWTHDGKG----MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGT---------------DQSEDILCAE 227 (430)
T ss_dssp E-EEECSCCEEECTTSSE----EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTS---------------CGGGCEEEEC
T ss_pred c-ccccccceEEcCCCCE----EEEEEeccccCcccccccccCCcceEEEEECCC---------------Cccccccccc
Confidence 1 1223468999999999 9998754321 1112222345667899988831 1111122222
Q ss_pred C-C--CccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCC
Q 003886 370 S-I--SSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSI 446 (789)
Q Consensus 370 ~-~--~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~ 446 (789)
. . ........|+||++|+....... .....++..|+........... ....++.. ..
T Consensus 228 e~d~~~~~~~~~~s~d~~~l~i~~~~~~------~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~-----~~------- 287 (430)
T d1qfma1 228 FPDEPKWMGGAELSDDGRYVLLSIREGC------DPVNRLWYCDLQQESNGITGIL--KWVKLIDN-----FE------- 287 (430)
T ss_dssp CTTCTTCEEEEEECTTSCEEEEEEECSS------SSCCEEEEEEGGGSSSSSCSSC--CCEEEECS-----SS-------
T ss_pred cccCCceEEeeeccCCcceeeEEeeccC------CccEEEEEeeCCCccccccccc--ceeEeecc-----cc-------
Confidence 2 1 22345667999999877665431 1235688888765332111110 01111110 00
Q ss_pred CCC-ccccCCCEEEEEEEeCC-eEEEEEEECCCCc---EEEecCCC-CCceeEEeeecCCEEEEEEeCCCCCCeEEEEee
Q 003886 447 LSN-PWLSDGCTMLLSSIWGS-SQVIISVNVSSGE---LLRITPAE-SNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYF 520 (789)
Q Consensus 447 ~~~-~ws~Dg~~l~~~~~~~~-~~~l~~~dl~tg~---~~~lt~~~-~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~ 520 (789)
... ....+|..+|+.++..+ ...|+.++++... .+.+.+.. .......++..+++|+...... .-+.|.++++
T Consensus 288 ~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~-~~~~l~v~~~ 366 (430)
T d1qfma1 288 GEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD-VKNTLQLHDL 366 (430)
T ss_dssp SCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET-TEEEEEEEET
T ss_pred cceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcC-CEeEEEEEEC
Confidence 011 12235667777776553 4689999987643 24454432 2233335566677777665443 3455777776
Q ss_pred ccc
Q 003886 521 VDK 523 (789)
Q Consensus 521 ~~~ 523 (789)
.++
T Consensus 367 ~~~ 369 (430)
T d1qfma1 367 ATG 369 (430)
T ss_dssp TTC
T ss_pred CCC
Confidence 544
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.24 E-value=3.3e-06 Score=88.78 Aligned_cols=190 Identities=13% Similarity=0.046 Sum_probs=98.4
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCcee---eeeeeec-cCCcceEEEeccccc
Q 003886 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK---LGIKYCY-NRPCALYAVRVSLYK 346 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~---~g~~~~~-~~~~~l~~~d~~~~~ 346 (789)
..+.|-++|++++++..+..++........+++|||+. ++...+....-. .|..... .....+-.+|.
T Consensus 92 ~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t----~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~---- 163 (441)
T d1qnia2 92 ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKT----NYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA---- 163 (441)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBC----CEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET----
T ss_pred CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCE----EEEEeccCCcccccCcccccccccccceEEeecC----
Confidence 34789999999998876532454556778999999998 554433221100 0000000 01112334554
Q ss_pred chhhhhhhhcCCCCCCCe-eecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceee
Q 003886 347 SEASELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVD 425 (789)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~-~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~ 425 (789)
++.+. .++.- .+......|||||++++..+.... .+..++..+.... +
T Consensus 164 -------------~t~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse----------~~~~id~~t~~~~-------d 212 (441)
T d1qnia2 164 -------------ETMDVAWQVIV-DGNLDNTDADYTGKYATSTCYNSE----------RAVDLAGTMRNDR-------D 212 (441)
T ss_dssp -------------TTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTT----------CCSSHHHHTCSSB-------C
T ss_pred -------------ccceeeEEEec-CCCccceEECCCCCEEEEEecCCC----------ceEEEeccCcceE-------E
Confidence 33332 23322 345778999999999876664431 2223333332221 1
Q ss_pred EEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEE-CCCCcE-EEecCCCCCceeEEeeecCCEEE
Q 003886 426 VIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVN-VSSGEL-LRITPAESNFSWSLLTLDGDNII 503 (789)
Q Consensus 426 v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~d-l~tg~~-~~lt~~~~~~~~~~~s~dg~~l~ 503 (789)
.+.+...+ ....+++||+++++ .+.. +..++ ..+.++ ..|..+.. .....++|||++++
T Consensus 213 ~i~v~n~p-------------~~~~~~~dGk~~~v----~~~~-v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~ 273 (441)
T d1qnia2 213 WVVVFNVE-------------RIAAAVKAGNFKTI----GDSK-VPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFI 273 (441)
T ss_dssp EEEEEEHH-------------HHHHHHHTTCCBCC----TTCC-CCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEE
T ss_pred EEEeCCcc-------------ceEEEecCCCEEEe----CCCC-cEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEE
Confidence 22222111 13356789986543 2222 23334 333333 34433333 33468999999887
Q ss_pred EEEeCCCCCCeEEEEeec
Q 003886 504 AVSSSPVDVPQVKYGYFV 521 (789)
Q Consensus 504 ~~~ss~~~p~~i~~~~~~ 521 (789)
.+..-..+ +.++|+.
T Consensus 274 ~~~~~~~t---vsv~d~~ 288 (441)
T d1qnia2 274 ANGKLSPT---VSVIAID 288 (441)
T ss_dssp EECTTSSB---EEEEEGG
T ss_pred EeCCcCCc---EEEEEee
Confidence 66533333 6666754
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.19 E-value=3.3e-05 Score=78.31 Aligned_cols=271 Identities=8% Similarity=-0.001 Sum_probs=131.6
Q ss_pred EeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCcc
Q 003886 160 VPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 237 (789)
Q Consensus 160 ~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~ 237 (789)
.+++||++||..+.++ .+.+|+ .++..+.+. +..+.| ..++|+||+ .|+..+.+.... .|.
T Consensus 18 c~~~~~~~l~tgs~Dg-----~i~vWd~~~~~~~~~l~---~H~~~V------~~l~~s~~~-~l~s~s~D~~i~--iw~ 80 (355)
T d1nexb2 18 CLQFEDNYVITGADDK-----MIRVYDSINKKFLLQLS---GHDGGV------WALKYAHGG-ILVSGSTDRTVR--VWD 80 (355)
T ss_dssp EEEEETTEEEEEETTT-----EEEEEETTTTEEEEEEE---CCSSCE------EEEEEETTT-EEEEEETTCCEE--EEE
T ss_pred EEEECCCEEEEEeCCC-----eEEEEECCCCcEEEEEE---CCCCCE------EEEEEcCCC-EEEEEecccccc--ccc
Confidence 4677899988776543 567773 444444333 222333 789999976 566666554322 222
Q ss_pred CCCCCCCCCC--cCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCC----------CCCC----------
Q 003886 238 LGSTKGGSSD--KDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGI----------PKSL---------- 295 (789)
Q Consensus 238 ~~~~~~~~~~--~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~----------~~~~---------- 295 (789)
.......... ...........+.++......+..+..|.+||+.++......+. ....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (355)
T d1nexb2 81 IKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH 160 (355)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECC
T ss_pred ccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeec
Confidence 1111100000 00000001122334433334445567899999877653322100 0000
Q ss_pred ccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCcc
Q 003886 296 SVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISSA 374 (789)
Q Consensus 296 ~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~~ 374 (789)
...-..+.++++. ++... ....|..+|+ .+++ ...........
T Consensus 161 ~~~v~~~~~~~~~----~~~~~---------------~d~~i~~~d~-----------------~~~~~~~~~~~~~~~~ 204 (355)
T d1nexb2 161 MASVRTVSGHGNI----VVSGS---------------YDNTLIVWDV-----------------AQMKCLYILSGHTDRI 204 (355)
T ss_dssp SSCEEEEEEETTE----EEEEE---------------TTSCEEEEET-----------------TTTEEEEEECCCSSCE
T ss_pred cccccccccccce----eeeec---------------ccceeeeeec-----------------ccccceeeeecccccc
Confidence 0011234455553 33322 2346777787 3333 33444455567
Q ss_pred CcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccC
Q 003886 375 FFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSD 454 (789)
Q Consensus 375 ~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~D 454 (789)
....|+|+++.++..+.+. .|+++|..++.......+. ...+..+.| +
T Consensus 205 ~~~~~~~~~~~~~~~~~d~-----------~i~i~d~~~~~~~~~~~~h-------------------~~~v~~~~~--~ 252 (355)
T d1nexb2 205 YSTIYDHERKRCISASMDT-----------TIRIWDLENGELMYTLQGH-------------------TALVGLLRL--S 252 (355)
T ss_dssp EEEEEETTTTEEEEEETTS-----------CEEEEETTTCCEEEEECCC-------------------SSCCCEEEE--C
T ss_pred ccccccccceeeecccccc-----------eEEeeeccccccccccccc-------------------ccccccccc--c
Confidence 7889999999988777543 4889998775432111100 012233344 4
Q ss_pred CCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeeccc
Q 003886 455 GCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 455 g~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~~ 523 (789)
++.| +++..++.. ..+|+.+++...............+++++. ++++.++ ..|.+.|+.++
T Consensus 253 ~~~l-~~~~~dg~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~d----~~i~vwd~~tg 313 (355)
T d1nexb2 253 DKFL-VSAAADGSI--RGWDANDYSRKFSYHHTNLSAITTFYVSDN-ILVSGSE----NQFNIYNLRSG 313 (355)
T ss_dssp SSEE-EEECTTSEE--EEEETTTCCEEEEEECTTCCCCCEEEECSS-EEEEEET----TEEEEEETTTC
T ss_pred ccee-eeeeccccc--ccccccccceecccccCCceEEEEEcCCCC-EEEEEeC----CEEEEEECCCC
Confidence 5544 555555554 445777766543332222223334555555 4445543 24777787654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.19 E-value=1.6e-05 Score=83.40 Aligned_cols=196 Identities=9% Similarity=-0.016 Sum_probs=93.6
Q ss_pred EecCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCC---
Q 003886 101 FNSGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENE--- 177 (789)
Q Consensus 101 ~~~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~--- 177 (789)
+...+|||+++ |+.+. ....+.+++++ ..+..++..-+. ..+....++||||+++++....+..
T Consensus 76 ~t~gtpDGr~l-fV~d~-------~~~rVavIDl~--t~k~~~ii~iP~---g~gphgi~~spdg~t~YV~~~~~~~v~~ 142 (441)
T d1qnia2 76 MTDGRYDGKYL-FINDK-------ANTRVARIRLD--IMKTDKITHIPN---VQAIHGLRLQKVPKTNYVFCNAEFVIPQ 142 (441)
T ss_dssp EETTEEEEEEE-EEEET-------TTTEEEEEETT--TTEEEEEEECTT---CCCEEEEEECCSSBCCEEEEEECSCEES
T ss_pred eecccCCCCEE-EEEcC-------CCCEEEEEECC--CCcEeeEEecCC---CCCccceEEeccCCEEEEEeccCCcccc
Confidence 33457999988 54432 23467776653 223223222221 0346668999999987655432210
Q ss_pred -----------CCeEE-EEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCCCCC
Q 003886 178 -----------SPIQF-ELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGSTKGG 244 (789)
Q Consensus 178 -----------~~~~~-~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~~~~ 244 (789)
....+ .++ ...+....+.+.... ..+.++|||++++..+...... ...........
T Consensus 143 ~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p----------~~v~~spdGk~a~vt~~nse~~-~~id~~t~~~~ 211 (441)
T d1qnia2 143 PNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNL----------DNTDADYTGKYATSTCYNSERA-VDLAGTMRNDR 211 (441)
T ss_dssp SCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCC----------CCEEECSSSSEEEEEESCTTCC-SSHHHHTCSSB
T ss_pred cCcccccccccccceEEeecCccceeeEEEecCCCc----------cceEECCCCCEEEEEecCCCce-EEEeccCcceE
Confidence 00112 222 223333333344444 6899999999877665543221 11110000000
Q ss_pred CCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCcee
Q 003886 245 SSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRK 324 (789)
Q Consensus 245 ~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~ 324 (789)
. ......|.....+.++.+..+.+ ....+.+.+..+.++... ++..-+...+..||||++ ++..+ ..
T Consensus 212 d-~i~v~n~p~~~~~~~dGk~~~v~-~~~v~vvd~~~~~~v~~~--IPvgksPhGv~vSPDGky----l~~~~-~~---- 278 (441)
T d1qnia2 212 D-WVVVFNVERIAAAVKAGNFKTIG-DSKVPVVDGRGESEFTRY--IPVPKNPHGLNTSPDGKY----FIANG-KL---- 278 (441)
T ss_dssp C-EEEEEEHHHHHHHHHTTCCBCCT-TCCCCEEECSSSCSSEEE--ECCBSSCCCEEECTTSCE----EEEEC-TT----
T ss_pred E-EEEeCCccceEEEecCCCEEEeC-CCCcEEEEcccCCceEEE--EeCCCCccCceECCCCCE----EEEeC-Cc----
Confidence 0 00001111112234443322221 223344444444444444 344556778999999997 55443 22
Q ss_pred eeeeeeccCCcceEEEec
Q 003886 325 LGIKYCYNRPCALYAVRV 342 (789)
Q Consensus 325 ~g~~~~~~~~~~l~~~d~ 342 (789)
...+-++|+
T Consensus 279 ---------~~tvsv~d~ 287 (441)
T d1qnia2 279 ---------SPTVSVIAI 287 (441)
T ss_dssp ---------SSBEEEEEG
T ss_pred ---------CCcEEEEEe
Confidence 236888887
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.18 E-value=7.5e-05 Score=77.99 Aligned_cols=119 Identities=16% Similarity=0.155 Sum_probs=67.0
Q ss_pred cCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCC
Q 003886 367 LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSI 446 (789)
Q Consensus 367 Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~ 446 (789)
+..+...+...+|||||+.|+..+.+. ....+.+||+.++................ ..+.| +...+
T Consensus 227 l~~h~~~V~~l~~spdg~~l~sgs~D~--------t~~~i~lwd~~~g~~~~~l~~~~~~~~~~-----~~~~g-H~~~V 292 (393)
T d1sq9a_ 227 MINNSNSIRSVKFSPQGSLLAIAHDSN--------SFGCITLYETEFGERIGSLSVPTHSSQAS-----LGEFA-HSSWV 292 (393)
T ss_dssp --CCCCCEEEEEECSSTTEEEEEEEET--------TEEEEEEEETTTCCEEEEECBC-------------CCBS-BSSCE
T ss_pred cccccceEEEcccccccceeeeecCCC--------Ccceeeecccccceeeeeeccccccccce-----eeeec-ccCce
Confidence 444566788899999999998877653 12358889988765432111000000000 01111 12235
Q ss_pred CCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCC-Cce----eEEeeecCCEE
Q 003886 447 LSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAES-NFS----WSLLTLDGDNI 502 (789)
Q Consensus 447 ~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~-~~~----~~~~s~dg~~l 502 (789)
..+.|+|||+.| +++..++...|| |+.+|+.......+. .+. ...+++++..+
T Consensus 293 ~~l~fspd~~~l-~S~s~D~~v~vW--d~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~ 350 (393)
T d1sq9a_ 293 MSLSFNDSGETL-CSAGWDGKLRFW--DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSL 350 (393)
T ss_dssp EEEEECSSSSEE-EEEETTSEEEEE--ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred eeeccCCCCCee-EEECCCCEEEEE--ECCCCCEEEEECCcCCcccCCccEEEECCCCCEE
Confidence 578899999854 677667766665 778888766554432 111 13566666543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.18 E-value=4.1e-05 Score=75.82 Aligned_cols=200 Identities=11% Similarity=0.024 Sum_probs=107.1
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKP 234 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~ 234 (789)
.....++++|..++..... .+...+ ..++..+..... . ....++|+++.++....+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~--~----------~~~~~~~~~~~~~v~~~~~----- 140 (287)
T d1pgua2 83 PKVASANNDGFTAVLTNDD-----DLLILQSFTGDIIKSVRLN--S----------PGSAVSLSQNYVAVGLEEG----- 140 (287)
T ss_dssp EEEEEECSSSEEEEEETTS-----EEEEEETTTCCEEEEEECS--S----------CEEEEEECSSEEEEEETTT-----
T ss_pred eeeeeeccCCceEEEeecc-----cceeeeccceeeeeecccc--c----------eeeeeeccCcceeeecccc-----
Confidence 4456788888877765332 344444 344444444332 1 3456888888888764432
Q ss_pred CccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEE
Q 003886 235 TFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLV 314 (789)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~ 314 (789)
..+.+|++...+.......+....+..++|+|||+. |+
T Consensus 141 --------------------------------------~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~----l~ 178 (287)
T d1pgua2 141 --------------------------------------NTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETY----IA 178 (287)
T ss_dssp --------------------------------------SCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSE----EE
T ss_pred --------------------------------------ceeeeeeccccceeeeeeeccCCceeEEEeccCccc----cc
Confidence 346777775544332211233445778999999997 66
Q ss_pred EEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCe--eecCCCCCccCcceecCCCCEEEEEecC
Q 003886 315 FVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPV--VNLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 315 f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
..+ ....|+.+|+ .++.. ..+..+...+...+|+|+++........
T Consensus 179 ~g~---------------~dg~i~i~d~-----------------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 226 (287)
T d1pgua2 179 AGD---------------VMGKILLYDL-----------------QSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE 226 (287)
T ss_dssp EEE---------------TTSCEEEEET-----------------TTTEEEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred ccc---------------ccccccceee-----------------cccccccccccccccccceeeecccccccccccCC
Confidence 554 2236788887 33322 2334445556677888776543222211
Q ss_pred CCC-CCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 393 SSV-DSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 393 ~~~-~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
... ..| .....|++||+..+......... +...+..+.|++|++ | +++..++...+|
T Consensus 227 ~~~l~sg--s~D~~i~iw~~~~~~~~~~~~~~------------------h~~~V~~v~~~~~~~-l-~s~g~D~~v~iW 284 (287)
T d1pgua2 227 EDLVATG--SLDTNIFIYSVKRPMKIIKALNA------------------HKDGVNNLLWETPST-L-VSSGADACIKRW 284 (287)
T ss_dssp CCEEEEE--ETTSCEEEEESSCTTCCEEETTS------------------STTCEEEEEEEETTE-E-EEEETTSCEEEE
T ss_pred CCeeEee--cCCCeEEEEECCCCCeEEEEeCC------------------CCCCeEEEEECCCCE-E-EEEECCCeEEEE
Confidence 110 000 01135899998664332100000 111345678999874 4 566677788888
Q ss_pred EE
Q 003886 472 SV 473 (789)
Q Consensus 472 ~~ 473 (789)
.+
T Consensus 285 ~i 286 (287)
T d1pgua2 285 NV 286 (287)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.14 E-value=8.1e-06 Score=85.71 Aligned_cols=143 Identities=15% Similarity=0.102 Sum_probs=88.9
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEec--CCceeEEEecCC---CccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWS--QSQLEKEFHVPQ---TVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~---~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
+...+||||| .||..+.++ .+.+|+ .++......... +..+.| ..++|||||+.|+..+.+..
T Consensus 187 ~~~v~~s~dg-~lasgs~Dg-----~i~iwd~~~~~~~~~~~~~~~l~~h~~~V------~~l~~spdg~~l~sgs~D~t 254 (393)
T d1sq9a_ 187 ATSVDISERG-LIATGFNNG-----TVQISELSTLRPLYNFESQHSMINNSNSI------RSVKFSPQGSLLAIAHDSNS 254 (393)
T ss_dssp CCEEEECTTS-EEEEECTTS-----EEEEEETTTTEEEEEEECCC---CCCCCE------EEEEECSSTTEEEEEEEETT
T ss_pred EEEEEECCCC-EEEEEeCCC-----cEEEEeecccccccccccccccccccceE------EEcccccccceeeeecCCCC
Confidence 5678999998 565444332 566773 344433333211 122233 78999999999998876541
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEec-cC----------C-CCCCccc
Q 003886 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAV-KG----------I-PKSLSVG 298 (789)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l-~~----------~-~~~~~~~ 298 (789)
...|.+||+++|+.... .. . .....+.
T Consensus 255 -----------------------------------------~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~ 293 (393)
T d1sq9a_ 255 -----------------------------------------FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVM 293 (393)
T ss_dssp -----------------------------------------EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEE
T ss_pred -----------------------------------------cceeeecccccceeeeeeccccccccceeeeecccCcee
Confidence 24577888888764332 10 0 0122467
Q ss_pred eEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCC-eeecCCCCCc----
Q 003886 299 QVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLP-VVNLTESISS---- 373 (789)
Q Consensus 299 ~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~Lt~~~~~---- 373 (789)
.++|+|||+. |+-.+ .+..|.++|+ ++++ +..|..+...
T Consensus 294 ~l~fspd~~~----l~S~s---------------~D~~v~vWd~-----------------~~g~~~~~l~gH~~~v~~~ 337 (393)
T d1sq9a_ 294 SLSFNDSGET----LCSAG---------------WDGKLRFWDV-----------------KTKERITTLNMHCDDIEIE 337 (393)
T ss_dssp EEEECSSSSE----EEEEE---------------TTSEEEEEET-----------------TTTEEEEEEECCGGGCSSG
T ss_pred eeccCCCCCe----eEEEC---------------CCCEEEEEEC-----------------CCCCEEEEECCcCCcccCC
Confidence 8999999997 76665 2347888898 4444 4556655433
Q ss_pred cCcceecCCCCEEE
Q 003886 374 AFFPRFSPDGKFLV 387 (789)
Q Consensus 374 ~~~p~~SpDG~~la 387 (789)
...+.|+|+|+.++
T Consensus 338 ~~~~~~~~~~~~~~ 351 (393)
T d1sq9a_ 338 EDILAVDEHGDSLA 351 (393)
T ss_dssp GGCCCBCTTSCBCS
T ss_pred ccEEEECCCCCEEE
Confidence 34588999998763
|
| >d1rp1a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Dog (Canis familiaris) [TaxId: 9615]
Probab=98.02 E-value=4.9e-06 Score=83.63 Aligned_cols=113 Identities=11% Similarity=0.042 Sum_probs=71.9
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHHHH-HHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHcCC
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSKSL-AFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDMGL 667 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~-~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~ 667 (789)
+...|++|++||...+.......... ++|...++.|+++|++.... ..+.... .+ ...-.+.+...|++|.++..
T Consensus 67 ~~~~pt~iiiHGw~~~~~~~~~~~~~~a~l~~~d~NVI~VDW~~~a~--~~Y~~a~-~n-~~~Vg~~ia~~i~~l~~~~g 142 (337)
T d1rp1a2 67 QTDKKTRFIIHGFIDKGEENWLLDMCKNMFKVEEVNCICVDWKKGSQ--TSYTQAA-NN-VRVVGAQVAQMLSMLSANYS 142 (337)
T ss_dssp CTTSEEEEEECCCCCTTCTTHHHHHHHHHTTTCCEEEEEEECHHHHS--SCHHHHH-HH-HHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEeCCCcCCCCcchHHHHHHHHHhcCCceEEEEeeccccC--cchHHHH-HH-HHHHHHHHHHHHHHHHHhcC
Confidence 45689999999976654333233333 35556679999999963111 1110000 00 00112456667777777655
Q ss_pred CCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 668 ANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 668 ~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
++.++|.|+|||+||.+|..+.. +..++..++...|.-
T Consensus 143 ~~~~~vhlIGhSLGAhvAG~aG~-~~~~l~rItgLDPA~ 180 (337)
T d1rp1a2 143 YSPSQVQLIGHSLGAHVAGEAGS-RTPGLGRITGLDPVE 180 (337)
T ss_dssp CCGGGEEEEEETHHHHHHHHHHH-TSTTCCEEEEESCCC
T ss_pred CChhheEEEeecHHHhhhHHHHH-hhccccceeccCCCc
Confidence 89999999999999999986655 455678888777643
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.97 E-value=8.3e-05 Score=73.51 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=87.7
Q ss_pred EEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCcc
Q 003886 158 AVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFS 237 (789)
Q Consensus 158 ~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~ 237 (789)
..+++|+++.+++....+ ....+|.-..............+.+ ..++|||||++|+....+
T Consensus 123 ~~~~~~~~~~~~v~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~v------~~~~~s~~~~~l~~g~~d--------- 183 (287)
T d1pgua2 123 GSAVSLSQNYVAVGLEEG----NTIQVFKLSDLEVSFDLKTPLRAKP------SYISISPSETYIAAGDVM--------- 183 (287)
T ss_dssp EEEEEECSSEEEEEETTT----SCEEEEETTEEEEEEECSSCCSSCE------EEEEECTTSSEEEEEETT---------
T ss_pred eeeeeccCcceeeecccc----ceeeeeeccccceeeeeeeccCCce------eEEEeccCcccccccccc---------
Confidence 346788999988766543 1345553222233333322222233 789999999998875432
Q ss_pred CCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEe
Q 003886 238 LGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVG 317 (789)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~ 317 (789)
..|.+||+.+++.....-......+..++|+|+++. .....
T Consensus 184 -----------------------------------g~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~----~~~~~ 224 (287)
T d1pgua2 184 -----------------------------------GKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG----ANEEE 224 (287)
T ss_dssp -----------------------------------SCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC----------C
T ss_pred -----------------------------------ccccceeecccccccccccccccccceeeecccccc----ccccc
Confidence 468899998887543311223445778899998764 32222
Q ss_pred ecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEec
Q 003886 318 WSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 318 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
.... +...-..+..|+++|+.. .....+.+..+...+....|+||++ |+..+.
T Consensus 225 ~~~~-----~l~sgs~D~~i~iw~~~~---------------~~~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~ 277 (287)
T d1pgua2 225 IEED-----LVATGSLDTNIFIYSVKR---------------PMKIIKALNAHKDGVNNLLWETPST-LVSSGA 277 (287)
T ss_dssp CSCC-----EEEEEETTSCEEEEESSC---------------TTCCEEETTSSTTCEEEEEEEETTE-EEEEET
T ss_pred CCCC-----eeEeecCCCeEEEEECCC---------------CCeEEEEeCCCCCCeEEEEECCCCE-EEEEEC
Confidence 1110 000011334688888721 1234455666777789999999975 555553
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.90 E-value=0.0019 Score=64.35 Aligned_cols=90 Identities=14% Similarity=0.184 Sum_probs=47.3
Q ss_pred cCCCCCceEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEE
Q 003886 103 SGNGNGTQAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQF 182 (789)
Q Consensus 103 ~~spdg~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~ 182 (789)
..+|||+ |.++ +. ....||.++ .++ +...+...+ +.....+++|||+. +++...+ + .++
T Consensus 34 Av~pdG~-l~vt-~~-------~~~~I~~i~--p~g-~~~~~~~~~-----~~~~gla~~~dG~l-~v~~~~~-~--~~~ 92 (302)
T d2p4oa1 34 ASAPDGT-IFVT-NH-------EVGEIVSIT--PDG-NQQIHATVE-----GKVSGLAFTSNGDL-VATGWNA-D--SIP 92 (302)
T ss_dssp EECTTSC-EEEE-ET-------TTTEEEEEC--TTC-CEEEEEECS-----SEEEEEEECTTSCE-EEEEECT-T--SCE
T ss_pred EECCCCC-EEEE-eC-------CCCEEEEEe--CCC-CEEEEEcCC-----CCcceEEEcCCCCe-EEEecCC-c--eEE
Confidence 4579996 4333 22 234677765 233 333332222 45677899999984 3333222 2 244
Q ss_pred EEe---cCCceeEEEecCCCccccccCCCcccceeecCCCCE
Q 003886 183 ELW---SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETL 221 (789)
Q Consensus 183 ~i~---~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~ 221 (789)
.++ ..+....+...+... ...++.+.+||+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~--------~~n~i~~~~~g~~ 126 (302)
T d2p4oa1 93 VVSLVKSDGTVETLLTLPDAI--------FLNGITPLSDTQY 126 (302)
T ss_dssp EEEEECTTSCEEEEEECTTCS--------CEEEEEESSSSEE
T ss_pred EEEecccccceeeccccCCcc--------ccceeEEccCCCE
Confidence 444 344555555543221 1257889999953
|
| >d1bu8a2 c.69.1.19 (A:1-336) Pancreatic lipase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Pancreatic lipase, N-terminal domain domain: Pancreatic lipase, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.87 E-value=1.5e-05 Score=79.82 Aligned_cols=113 Identities=11% Similarity=0.023 Sum_probs=73.6
Q ss_pred CCCCcEEEEEcCCCCCCCchhhHHHHH-HHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCccc-HHHHHHHHHHHHHcC
Q 003886 589 CSCDPLIVVLHGGPHSVSLSSYSKSLA-FLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQD-VNDVLTAIDHVIDMG 666 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~~~~~~~~~~-~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~-~~D~~~~i~~l~~~~ 666 (789)
+...|++|++||...+........... +|....+.|+++|+..... ..+..+. ..... -+.+...|++|....
T Consensus 67 ~~~~pt~iiiHG~~~~~~~~~~~~~~~a~l~~~d~NVi~VDW~~~a~--~~Y~~a~---~n~~~Vg~~ia~~i~~l~~~~ 141 (338)
T d1bu8a2 67 QLDRKTRFIVHGFIDKGEDGWLLDMCKKMFQVEKVNCICVDWRRGSR--TEYTQAS---YNTRVVGAEIAFLVQVLSTEM 141 (338)
T ss_dssp CTTSEEEEEECCSCCTTCTTHHHHHHHHHHTTCCEEEEEEECHHHHS--SCHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEeCcccCCCCcccHHHHHHHHHhcCCceEEEEechhhcc--cchHHHH---HhHHHHHHHHHHHHHHHHHhc
Confidence 457899999999765543333333333 5556669999999963111 1111000 00011 234455677766655
Q ss_pred CCCCccEEEEEcCccHHHHHHHHHhCCCceeEEEEeCCcc
Q 003886 667 LANPSKVTVVGGSHGGFLTTHLIGQAPDKFVAAAARNPLC 706 (789)
Q Consensus 667 ~~d~~rv~l~G~S~GG~~a~~~~~~~p~~~~a~v~~~pv~ 706 (789)
.++.++|.|+|||+|+.+|-.+..+.+.++..++...|.-
T Consensus 142 g~~~~~vhlIGhSLGAhiaG~ag~~l~~kigrItgLDPA~ 181 (338)
T d1bu8a2 142 GYSPENVHLIGHSLGAHVVGEAGRRLEGHVGRITGLDPAE 181 (338)
T ss_dssp CCCGGGEEEEEETHHHHHHHHHHHHTTTCSSEEEEESCBC
T ss_pred CCCcceeEEEeccHHHHHHHHHHHhhccccccccccccCc
Confidence 5899999999999999999999887777788888877653
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.87 E-value=0.00048 Score=69.48 Aligned_cols=216 Identities=9% Similarity=0.068 Sum_probs=111.6
Q ss_pred ccEEEEeCCCCCeEEEEecCC-CCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCC
Q 003886 155 GASAVVPSPSGSKLLVVRNPE-NESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPS 232 (789)
Q Consensus 155 ~~~~~~~SPdG~~la~~~~~~-~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~ 232 (789)
.....+++|||+.+ ++...+ .....++.+. .++............ .....+.+.|||+ |++.......
T Consensus 83 ~p~gla~~~dG~l~-va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-------~~~nd~~~d~~G~-l~vtd~~~~~- 152 (319)
T d2dg1a1 83 NPAAIKIHKDGRLF-VCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA-------YCIDDMVFDSKGG-FYFTDFRGYS- 152 (319)
T ss_dssp SEEEEEECTTSCEE-EEECTTSSSCCEEEEECTTSCSCEEEECSSSSC-------CCEEEEEECTTSC-EEEEECCCBT-
T ss_pred CeeEEEECCCCCEE-EEecCCCccceeEEEEcCCCceeeeeccCCCcc-------cCCcceeEEeccc-eeeccccccc-
Confidence 35578899999644 333221 1233466666 344444443321111 0125788999996 5554221100
Q ss_pred CCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccE
Q 003886 233 KPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~ 312 (789)
......++.++.+++.++.+ ...-.....++|+|||+.
T Consensus 153 ------------------------------------~~~~g~v~~~~~dg~~~~~~--~~~~~~pnGia~s~dg~~---- 190 (319)
T d2dg1a1 153 ------------------------------------TNPLGGVYYVSPDFRTVTPI--IQNISVANGIALSTDEKV---- 190 (319)
T ss_dssp ------------------------------------TBCCEEEEEECTTSCCEEEE--EEEESSEEEEEECTTSSE----
T ss_pred ------------------------------------ccCcceeEEEecccceeEEE--eeccceeeeeeeccccce----
Confidence 01235688899888777666 222224567899999997
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeec-------CCCCCccCcceecCCCCE
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNL-------TESISSAFFPRFSPDGKF 385 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~L-------t~~~~~~~~p~~SpDG~~ 385 (789)
|+++- . ....|+++++.. ++...... ..........++.+||+
T Consensus 191 lyvad-~-------------~~~~I~~~d~~~---------------~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~- 240 (319)
T d2dg1a1 191 LWVTE-T-------------TANRLHRIALED---------------DGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN- 240 (319)
T ss_dssp EEEEE-G-------------GGTEEEEEEECT---------------TSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-
T ss_pred EEEec-c-------------cCCceEEEEEcC---------------CCceeccccceeeeccCCccceeeeeEcCCCC-
Confidence 65543 2 123688888731 11111111 11112234567788887
Q ss_pred EEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEe-
Q 003886 386 LVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIW- 464 (789)
Q Consensus 386 la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~- 464 (789)
| |++... ...|.++|-+ |+. +..+..|... ++ .+.....+.|.+++..++.++..
T Consensus 241 l-~Va~~~---------~g~V~~~~p~-G~~----------l~~i~~P~~~--~~-~~~~~~~~~~~~~~~~~~~t~~~~ 296 (319)
T d2dg1a1 241 L-YVAMYG---------QGRVLVFNKR-GYP----------IGQILIPGRD--EG-HMLRSTHPQFIPGTNQLIICSNDI 296 (319)
T ss_dssp E-EEEEET---------TTEEEEECTT-SCE----------EEEEECTTGG--GT-CSCBCCEEEECTTSCEEEEEEECG
T ss_pred E-EEEEcC---------CCEEEEECCC-CcE----------EEEEeCCCcC--CC-cCceeeeEEEeCCCCEEEEEcCCC
Confidence 3 333221 2468888843 322 1111222110 00 01123456788888877776653
Q ss_pred --CCeEEEEEEECC
Q 003886 465 --GSSQVIISVNVS 476 (789)
Q Consensus 465 --~~~~~l~~~dl~ 476 (789)
.+...||+++..
T Consensus 297 ~~~~~g~l~~~~~~ 310 (319)
T d2dg1a1 297 EMGGGSMLYTVNGF 310 (319)
T ss_dssp GGTCCEEEEEEECS
T ss_pred CcCCceeEEEEeCC
Confidence 345679988863
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=0.0021 Score=63.85 Aligned_cols=179 Identities=12% Similarity=-0.022 Sum_probs=93.5
Q ss_pred CccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccch
Q 003886 269 GKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 348 (789)
Q Consensus 269 ~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (789)
+.....+.++|...++.... ... .......+++|++. |+..+ .+..|+++|+
T Consensus 153 ~~~d~~i~~~d~~~~~~~~~--~~~-~~~~~~~~~~~~~~----l~s~~---------------~dg~i~~~d~------ 204 (342)
T d2ovrb2 153 GAYDFMVKVWDPETETCLHT--LQG-HTNRVYSLQFDGIH----VVSGS---------------LDTSIRVWDV------ 204 (342)
T ss_dssp EETTSCEEEEEGGGTEEEEE--ECC-CSSCEEEEEECSSE----EEEEE---------------TTSCEEEEET------
T ss_pred ecCCCeEEEeecccceeeEE--EcC-cccccccccCCCCE----EEEEe---------------CCCeEEEeec------
Confidence 34557788999887765433 122 13345677889887 66555 2336888887
Q ss_pred hhhhhhhcCCCCCCC-eeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEE
Q 003886 349 ASELELKESSSEDLP-VVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (789)
Q Consensus 349 ~~~~~~~~~~~~~~~-~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~ 427 (789)
..+. ...+..+...+. .+++++++|+..+.+. .|++||....+......
T Consensus 205 -----------~~~~~~~~~~~~~~~v~--~~~~~~~~l~s~s~d~-----------~i~iwd~~~~~~~~~~~------ 254 (342)
T d2ovrb2 205 -----------ETGNCIHTLTGHQSLTS--GMELKDNILVSGNADS-----------TVKIWDIKTGQCLQTLQ------ 254 (342)
T ss_dssp -----------TTCCEEEEECCCCSCEE--EEEEETTEEEEEETTS-----------CEEEEETTTCCEEEEEC------
T ss_pred -----------ccceeeeEeccccccee--EEecCCCEEEEEcCCC-----------EEEEEeccccccccccc------
Confidence 3333 344444444333 4566677777666442 58999987644321100
Q ss_pred eeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEE-ecCC----C-CCceeEEeeecCCE
Q 003886 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLR-ITPA----E-SNFSWSLLTLDGDN 501 (789)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~-lt~~----~-~~~~~~~~s~dg~~ 501 (789)
..... ......++.+++. ++++..++. |..+|+.+|+..+ +... . ..+....+++++..
T Consensus 255 ----~~~~~--------~~~~~~~~~~~~~-~~s~s~Dg~--i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~ 319 (342)
T d2ovrb2 255 ----GPNKH--------QSAVTCLQFNKNF-VITSSDDGT--VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV 319 (342)
T ss_dssp ----STTSC--------SSCEEEEEECSSE-EEEEETTSE--EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEE
T ss_pred ----cccee--------eeceeecccCCCe-eEEEcCCCE--EEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCE
Confidence 00000 0112234556664 456665665 4555888887643 3211 1 12333456666544
Q ss_pred EEEEEeCCCCCCeEEEEee
Q 003886 502 IIAVSSSPVDVPQVKYGYF 520 (789)
Q Consensus 502 l~~~~ss~~~p~~i~~~~~ 520 (789)
++....+-+.-..|++.|+
T Consensus 320 la~g~~dGt~~~~l~~~Df 338 (342)
T d2ovrb2 320 CAVGSRNGTEETKLLVLDF 338 (342)
T ss_dssp EEEECSSSSSCCEEEEEEC
T ss_pred EEEEeCCCCCeeEEEEEeC
Confidence 3333333333445665554
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.78 E-value=0.00013 Score=72.92 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=25.3
Q ss_pred ccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCC
Q 003886 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGN 416 (789)
Q Consensus 373 ~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~ 416 (789)
.+...+|||+|++|+..+.+. .|++||+.++..
T Consensus 253 ~v~~l~~sp~~~~lasg~~Dg-----------~v~vWD~~~~~~ 285 (342)
T d1yfqa_ 253 PVNSIEFSPRHKFLYTAGSDG-----------IISCWNLQTRKK 285 (342)
T ss_dssp CEEEEEECTTTCCEEEEETTS-----------CEEEEETTTTEE
T ss_pred cceeEEecCCccEEEEECCCC-----------EEEEEECCCCcE
Confidence 455689999999988777543 599999987543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.66 E-value=0.0022 Score=62.32 Aligned_cols=180 Identities=8% Similarity=-0.031 Sum_probs=109.1
Q ss_pred CceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhh
Q 003886 272 QPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEAS 350 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~ 350 (789)
...|++.+++++..+.+ .... ..+..++...-++. |+++-. ....|.++++
T Consensus 57 ~~~I~~~~l~g~~~~~v--~~~~~~~p~~iAvD~~~~~----lY~~d~--------------~~~~I~~~~~-------- 108 (263)
T d1npea_ 57 EPSIGRASLHGGEPTTI--IRQDLGSPEGIALDHLGRT----IFWTDS--------------QLDRIEVAKM-------- 108 (263)
T ss_dssp TTEEEEEESSSCCCEEE--ECTTCCCEEEEEEETTTTE----EEEEET--------------TTTEEEEEET--------
T ss_pred CCeEEEEEcccCCcEEE--EEeccccccEEEEeccCCe----EEEecc--------------CCCEEEEEec--------
Confidence 36799999988777666 2222 24556677666766 666541 2337888887
Q ss_pred hhhhhcCCCCCCCeeecC-CCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEee
Q 003886 351 ELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPV 429 (789)
Q Consensus 351 ~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~ 429 (789)
++...+.|. .........++.|.+.+|+|..... ....|++.++++.+...+...
T Consensus 109 ---------dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~--------~~~~I~r~~~dG~~~~~i~~~------- 164 (263)
T d1npea_ 109 ---------DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR--------DNPKIETSHMDGTNRRILAQD------- 164 (263)
T ss_dssp ---------TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS--------SSCEEEEEETTSCCCEEEECT-------
T ss_pred ---------CCceEEEEecccccCCcEEEEecccCcEEEeecCC--------CCcEEEEecCCCCCceeeeee-------
Confidence 444444443 3334466778899888888876432 234699999877544221110
Q ss_pred eeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCC
Q 003886 430 VQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSP 509 (789)
Q Consensus 430 ~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~ 509 (789)
+-.. ...+++.+.+++||+.- .+...|.+++++++..+.+..... .-..++.++++|+++....
T Consensus 165 -----~~~~-------P~glaiD~~~~~lYw~d--~~~~~I~~~~~~g~~~~~v~~~~~--~P~~lav~~~~lYwtd~~~ 228 (263)
T d1npea_ 165 -----NLGL-------PNGLTFDAFSSQLCWVD--AGTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSYGKNLYYTDWKT 228 (263)
T ss_dssp -----TCSC-------EEEEEEETTTTEEEEEE--TTTTEEEEEETTEEEEEEEEECCC--SEEEEEEETTEEEEEETTT
T ss_pred -----cccc-------cceEEEeecCcEEEEEe--CCCCEEEEEECCCCCeEEEECCCC--CcEEEEEECCEEEEEECCC
Confidence 0011 12456667788898863 445578899997776666654332 1135666788877776543
Q ss_pred CCCCeEEEEeecc
Q 003886 510 VDVPQVKYGYFVD 522 (789)
Q Consensus 510 ~~p~~i~~~~~~~ 522 (789)
. .|++++..+
T Consensus 229 ~---~I~~~~~~~ 238 (263)
T d1npea_ 229 N---SVIAMDLAI 238 (263)
T ss_dssp T---EEEEEETTT
T ss_pred C---EEEEEECCC
Confidence 3 477777543
|
| >d1mo2a_ c.69.1.22 (A:) Erythromycin polyketide synthase {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterase domain of polypeptide, polyketide and fatty acid synthases domain: Erythromycin polyketide synthase species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=97.65 E-value=8.3e-05 Score=72.68 Aligned_cols=102 Identities=14% Similarity=0.147 Sum_probs=67.8
Q ss_pred CCCcEEEEEcCCCCCCCchhhHHHHHHHHHCCcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHH-HHHHHHcCCC
Q 003886 590 SCDPLIVVLHGGPHSVSLSSYSKSLAFLSSVGYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTA-IDHVIDMGLA 668 (789)
Q Consensus 590 ~~~P~vv~~HGg~~~~~~~~~~~~~~~la~~Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~-i~~l~~~~~~ 668 (789)
...|.++++||...+.....|......|... +.|+.++.+| ++... ....+++++.+. ++.+.+. .
T Consensus 40 ~~~~~l~c~~~~~~gg~~~~y~~La~~L~~~-~~V~al~~pG---~~~~e-------~~~~s~~~~a~~~~~~i~~~--~ 106 (255)
T d1mo2a_ 40 PGEVTVICCAGTAAISGPHEFTRLAGALRGI-APVRAVPQPG---YEEGE-------PLPSSMAAVAAVQADAVIRT--Q 106 (255)
T ss_dssp SCSSEEEEECCCSSSCSGGGGHHHHHHHTTT-CCEEEECCTT---SSTTC-------CEESSHHHHHHHHHHHHHHT--T
T ss_pred CCCCeEEEECCCCCCCCHHHHHHHHHhcCCC-ceEEEEeCCC---cCCCC-------CCCCCHHHHHHHHHHHHHHh--C
Confidence 4568899999743322456777777777654 8999999987 43321 112245666554 3444443 3
Q ss_pred CCccEEEEEcCccHHHHHHHHHhC---CCceeEEEEeCC
Q 003886 669 NPSKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNP 704 (789)
Q Consensus 669 d~~rv~l~G~S~GG~~a~~~~~~~---p~~~~a~v~~~p 704 (789)
...++.|+|||+||.++..+|.+. ...+..+++..+
T Consensus 107 ~~~P~~L~GhS~Gg~vA~e~A~~l~~~g~~v~~lvlld~ 145 (255)
T d1mo2a_ 107 GDKPFVVAGHSAGALMAYALATELLDRGHPPRGVVLIDV 145 (255)
T ss_dssp SSSCEEEEECSTTHHHHHHHHHHHHHHTCCCSEEEEEEC
T ss_pred CCCCEEEEEeCCcHHHHHHHHHhhHhcCCCccEEEEECC
Confidence 456799999999999999888753 345777777665
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.0056 Score=59.46 Aligned_cols=182 Identities=8% Similarity=-0.026 Sum_probs=105.8
Q ss_pred ceEEEEEccCC----ceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccch
Q 003886 273 PSLFVININSG----EVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSE 348 (789)
Q Consensus 273 ~~l~v~d~~~g----~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~ 348 (789)
..|+..++++. ..+.+. ...-..+..++..+-++. |+++- . ....|+++++
T Consensus 52 ~~I~~~~l~~~~~~~~~~~~~-~~~~~~p~glAvD~~~~~----lY~~d-~-------------~~~~I~v~~~------ 106 (266)
T d1ijqa1 52 RMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWIHSN----IYWTD-S-------------VLGTVSVADT------ 106 (266)
T ss_dssp TEEEEEEC--------CEEEE-CSSCSCCCEEEEETTTTE----EEEEE-T-------------TTTEEEEEET------
T ss_pred CEEEEEEecCCCCCcceEEEE-eCCCCCcceEEEeeccce----EEEEe-c-------------CCCEEEeEec------
Confidence 45777766542 222221 222234567788888887 77653 1 2236889988
Q ss_pred hhhhhhhcCCCCCCCeee-cCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEE
Q 003886 349 ASELELKESSSEDLPVVN-LTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVI 427 (789)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~-Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~ 427 (789)
++...+. +..........++.|...+|+|..... ...|++.++++.....+...
T Consensus 107 -----------~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~---------~~~I~r~~~dGs~~~~l~~~----- 161 (266)
T d1ijqa1 107 -----------KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT---------PAKIKKGGLNGVDIYSLVTE----- 161 (266)
T ss_dssp -----------TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS---------SCEEEEEETTSCCEEEEECS-----
T ss_pred -----------CCceEEEEEcCCCCCcceEEEEcccCeEEEeccCC---------CcceeEeccCCCceeccccc-----
Confidence 5554444 333344466778888877888775322 24699999877544222110
Q ss_pred eeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCC-ceeEEeeecCCEEEEEE
Q 003886 428 PVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESN-FSWSLLTLDGDNIIAVS 506 (789)
Q Consensus 428 ~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~-~~~~~~s~dg~~l~~~~ 506 (789)
.-. ....+.+.+.+++||+.- .....|.+++++++..+.+...... ..-..++.++++|+++.
T Consensus 162 -------~~~-------~p~gl~iD~~~~~lYw~d--~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td 225 (266)
T d1ijqa1 162 -------NIQ-------WPNGITLDLLSGRLYWVD--SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 225 (266)
T ss_dssp -------SCS-------CEEEEEEETTTTEEEEEE--TTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEE
T ss_pred -------ccc-------eeeEEEeeccccEEEEec--CCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEE
Confidence 001 112456777888899873 3445789999987766655433321 12235777888888776
Q ss_pred eCCCCCCeEEEEeeccc
Q 003886 507 SSPVDVPQVKYGYFVDK 523 (789)
Q Consensus 507 ss~~~p~~i~~~~~~~~ 523 (789)
... ..|++++..++
T Consensus 226 ~~~---~~I~~~~~~~g 239 (266)
T d1ijqa1 226 IIN---EAIFSANRLTG 239 (266)
T ss_dssp TTT---TEEEEEETTTC
T ss_pred CCC---CeEEEEECCCC
Confidence 433 46888875544
|
| >d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Thioesterases domain: Palmitoyl protein thioesterase 1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.64 E-value=6.8e-05 Score=73.23 Aligned_cols=108 Identities=19% Similarity=0.215 Sum_probs=64.7
Q ss_pred CCCCcEEEEEcCCCCCCC-chhhHHHHHHHHHC--CcEEEEEcCCCCCCCCchhhccCCCCCCcccHHHHHHHHHHHHHc
Q 003886 589 CSCDPLIVVLHGGPHSVS-LSSYSKSLAFLSSV--GYSLLIVNYRGSLGFGEEALQSLPGKVGSQDVNDVLTAIDHVIDM 665 (789)
Q Consensus 589 ~~~~P~vv~~HGg~~~~~-~~~~~~~~~~la~~--Gy~V~~~d~rGs~G~G~~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 665 (789)
..+.| ||++||-..+.. ...+......+.+. |+.|+++++.... +....... ...++++.+.+...+++
T Consensus 3 ~~P~P-VVLvHGlg~s~~~~~~m~~l~~~l~~~~pG~~V~~l~~g~~~--~~~~~~~~-----~~~~~~~~e~v~~~I~~ 74 (279)
T d1ei9a_ 3 PAPLP-LVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIGKTL--REDVENSF-----FLNVNSQVTTVCQILAK 74 (279)
T ss_dssp TSSCC-EEEECCTTCCSCCTTTTHHHHHHHHHHSTTCCEEECCCSSSH--HHHHHHHH-----HSCHHHHHHHHHHHHHS
T ss_pred CCCCc-EEEECCCCCCCCChHHHHHHHHHHHHHCCCeEEEEEEcCCCc--ccccccch-----hhhHHHHHHHHHHHHHh
Confidence 34556 557899655432 23455556666655 9999999974311 11110000 11244555544444443
Q ss_pred CCCCCccEEEEEcCccHHHHHHHHHhCCC-ceeEEEEeCC
Q 003886 666 GLANPSKVTVVGGSHGGFLTTHLIGQAPD-KFVAAAARNP 704 (789)
Q Consensus 666 ~~~d~~rv~l~G~S~GG~~a~~~~~~~p~-~~~a~v~~~p 704 (789)
.....++|.++|||+||.++-.++.+.++ .++.+|..++
T Consensus 75 ~~~~~~~v~lVGhSqGGLiaR~~i~~~~~~~V~~lITLgs 114 (279)
T d1ei9a_ 75 DPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMVNLISVGG 114 (279)
T ss_dssp CGGGTTCEEEEEETTHHHHHHHHHHHCCSSCEEEEEEESC
T ss_pred ccccccceeEEEEccccHHHHHHHHHcCCCCcceEEEECC
Confidence 21234689999999999999999998775 4777777654
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.44 E-value=0.023 Score=54.69 Aligned_cols=204 Identities=10% Similarity=0.111 Sum_probs=118.8
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecC-CCccccccCCCcccceeecCCCCEEEEEeecCCCCC
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVP-QTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSK 233 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~-~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~ 233 (789)
+...++.+..++|.+.... ...++.+. +++....+.... ... .+++...-++.|+++..
T Consensus 38 ~~~ld~D~~~~~iywsd~~---~~~I~~~~l~g~~~~~v~~~~~~~p----------~~iAvD~~~~~lY~~d~------ 98 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWTDIS---EPSIGRASLHGGEPTTIIRQDLGSP----------EGIALDHLGRTIFWTDS------ 98 (263)
T ss_dssp EEEEEEETTTTEEEEEETT---TTEEEEEESSSCCCEEEECTTCCCE----------EEEEEETTTTEEEEEET------
T ss_pred EEEEEEEeCCCEEEEEECC---CCeEEEEEcccCCcEEEEEeccccc----------cEEEEeccCCeEEEecc------
Confidence 4456788888888775432 23466666 444444443321 111 45666666777776522
Q ss_pred CCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCC-CccceEEEeeCCCCCccE
Q 003886 234 PTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKS-LSVGQVVWAPLNEGLHQY 312 (789)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~-~~~~~~~wSPDg~~~~~~ 312 (789)
....|.++++++...+.+ .... .....++..|....
T Consensus 99 -------------------------------------~~~~I~~~~~dg~~~~~l--~~~~l~~p~~l~vdp~~g~---- 135 (263)
T d1npea_ 99 -------------------------------------QLDRIEVAKMDGTQRRVL--FDTGLVNPRGIVTDPVRGN---- 135 (263)
T ss_dssp -------------------------------------TTTEEEEEETTSCSCEEE--ECSSCSSEEEEEEETTTTE----
T ss_pred -------------------------------------CCCEEEEEecCCceEEEE--ecccccCCcEEEEecccCc----
Confidence 235788899887766555 2222 35667888887775
Q ss_pred EEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecC-CCCCccCcceecCCCCEEEEEec
Q 003886 313 LVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSA 391 (789)
Q Consensus 313 l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~la~~s~ 391 (789)
|+++.+.. ....|+++++ ++...+.+. .........++.+.+++|+|+..
T Consensus 136 ly~t~~~~------------~~~~I~r~~~-----------------dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~ 186 (263)
T d1npea_ 136 LYWTDWNR------------DNPKIETSHM-----------------DGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA 186 (263)
T ss_dssp EEEEECCS------------SSCEEEEEET-----------------TSCCCEEEECTTCSCEEEEEEETTTTEEEEEET
T ss_pred EEEeecCC------------CCcEEEEecC-----------------CCCCceeeeeecccccceEEEeecCcEEEEEeC
Confidence 66554211 1225999998 444444443 33344566788899999988764
Q ss_pred CCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEE
Q 003886 392 KSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVII 471 (789)
Q Consensus 392 ~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~ 471 (789)
. ...|.+.|+++...+. +..-. ..| ...+-++.+||++.. +...|+
T Consensus 187 ~----------~~~I~~~~~~g~~~~~-------v~~~~------~~P---------~~lav~~~~lYwtd~--~~~~I~ 232 (263)
T d1npea_ 187 G----------THRAECLNPAQPGRRK-------VLEGL------QYP---------FAVTSYGKNLYYTDW--KTNSVI 232 (263)
T ss_dssp T----------TTEEEEEETTEEEEEE-------EEECC------CSE---------EEEEEETTEEEEEET--TTTEEE
T ss_pred C----------CCEEEEEECCCCCeEE-------EECCC------CCc---------EEEEEECCEEEEEEC--CCCEEE
Confidence 3 2468889887633321 11100 001 122335667877642 344699
Q ss_pred EEECCCCcEEEec
Q 003886 472 SVNVSSGELLRIT 484 (789)
Q Consensus 472 ~~dl~tg~~~~lt 484 (789)
++|..+|+...+.
T Consensus 233 ~~~~~~g~~~~~~ 245 (263)
T d1npea_ 233 AMDLAISKEMDTF 245 (263)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEECCCCccceEE
Confidence 9999888766554
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.44 E-value=0.0092 Score=59.45 Aligned_cols=75 Identities=12% Similarity=0.259 Sum_probs=48.8
Q ss_pred cceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCee-ecCCCCCccC
Q 003886 297 VGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVV-NLTESISSAF 375 (789)
Q Consensus 297 ~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~Lt~~~~~~~ 375 (789)
...+++..||+ |+.+.+ ....|+++|. +++... .+........
T Consensus 228 pdGiavD~~Gn-----lyVa~~--------------~~g~I~~~dp-----------------~~g~~~~~i~~p~~~~t 271 (314)
T d1pjxa_ 228 ADGMDFDEDNN-----LLVANW--------------GSSHIEVFGP-----------------DGGQPKMRIRCPFEKPS 271 (314)
T ss_dssp EEEEEEBTTCC-----EEEEEE--------------TTTEEEEECT-----------------TCBSCSEEEECSSSCEE
T ss_pred ceeeEEecCCc-----EEEEEc--------------CCCEEEEEeC-----------------CCCEEEEEEECCCCCEE
Confidence 44678888886 544432 2237999997 555433 3433334567
Q ss_pred cceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCC
Q 003886 376 FPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNF 417 (789)
Q Consensus 376 ~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~ 417 (789)
+.+|.|||++|+..... ..+|++++++..+.+
T Consensus 272 ~~afg~d~~~lyVt~~~----------~g~i~~~~~~~~G~~ 303 (314)
T d1pjxa_ 272 NLHFKPQTKTIFVTEHE----------NNAVWKFEWQRNGKK 303 (314)
T ss_dssp EEEECTTSSEEEEEETT----------TTEEEEEECSSCBCC
T ss_pred EEEEeCCCCEEEEEECC----------CCcEEEEECCCCChh
Confidence 78999999988665533 247999998775543
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.43 E-value=0.0037 Score=61.91 Aligned_cols=98 Identities=11% Similarity=0.025 Sum_probs=58.4
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
..|.+||....+..............-..++++++. ++..+ .+..|.++|+
T Consensus 237 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~s~s---------------~Dg~i~iwd~---------- 287 (342)
T d2ovrb2 237 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF----VITSS---------------DDGTVKLWDL---------- 287 (342)
T ss_dssp SCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSE----EEEEE---------------TTSEEEEEET----------
T ss_pred CEEEEEecccccccccccccceeeeceeecccCCCe----eEEEc---------------CCCEEEEEEC----------
Confidence 568899988876544311111222233456667665 55554 2236888888
Q ss_pred hhhcCCCCCCCe-eecCC-----CCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCC
Q 003886 353 ELKESSSEDLPV-VNLTE-----SISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPT 413 (789)
Q Consensus 353 ~~~~~~~~~~~~-~~Lt~-----~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~ 413 (789)
.+++. +.+.. +...+...+|||||..|+..+.+.. ....|++||++.
T Consensus 288 -------~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt-------~~~~l~~~Df~~ 340 (342)
T d2ovrb2 288 -------KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT-------EETKLLVLDFDV 340 (342)
T ss_dssp -------TTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSS-------SCCEEEEEECCC
T ss_pred -------CCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCC-------CeeEEEEEeCCC
Confidence 44443 33421 2334778899999987776665431 234699999864
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.35 E-value=0.015 Score=56.26 Aligned_cols=207 Identities=9% Similarity=0.064 Sum_probs=116.9
Q ss_pred cccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCC-c--eeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCC
Q 003886 154 TGASAVVPSPSGSKLLVVRNPENESPIQFELWSQS-Q--LEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPS 230 (789)
Q Consensus 154 ~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~-~--~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~ 230 (789)
..+....|.+.+++|+++... ...++.....+ . ....+-...+.. ...+++.-+-++.|+++-.
T Consensus 30 ~~~~~id~d~~~~~lYw~D~~---~~~I~~~~l~~~~~~~~~~~~~~~~~~-------~p~glAvD~~~~~lY~~d~--- 96 (266)
T d1ijqa1 30 RNVVALDTEVASNRIYWSDLS---QRMICSTQLDRAHGVSSYDTVISRDIQ-------APDGLAVDWIHSNIYWTDS--- 96 (266)
T ss_dssp SSEEEEEEETTTTEEEEEETT---TTEEEEEEC--------CEEEECSSCS-------CCCEEEEETTTTEEEEEET---
T ss_pred CceEEEEEEeCCCEEEEEECC---CCEEEEEEecCCCCCcceEEEEeCCCC-------CcceEEEeeccceEEEEec---
Confidence 456678899999999776432 23455554221 1 111111111110 0146777777777776521
Q ss_pred CCCCCccCCCCCCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCc
Q 003886 231 PSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLH 310 (789)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~ 310 (789)
....|.++++++...+.+. .........++..|....
T Consensus 97 ----------------------------------------~~~~I~v~~~~g~~~~~~~-~~~~~~P~~l~vd~~~g~-- 133 (266)
T d1ijqa1 97 ----------------------------------------VLGTVSVADTKGVKRKTLF-RENGSKPRAIVVDPVHGF-- 133 (266)
T ss_dssp ----------------------------------------TTTEEEEEETTSSSEEEEE-ECTTCCEEEEEEETTTTE--
T ss_pred ----------------------------------------CCCEEEeEecCCceEEEEE-cCCCCCcceEEEEcccCe--
Confidence 2357899999887765552 222234667788887665
Q ss_pred cEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhhhhhcCCCCCCCeeecCC-CCCccCcceecCCCCEEEEE
Q 003886 311 QYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASELELKESSSEDLPVVNLTE-SISSAFFPRFSPDGKFLVFL 389 (789)
Q Consensus 311 ~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Lt~-~~~~~~~p~~SpDG~~la~~ 389 (789)
|+++.+. ....|+++++ ++...+.|.. ........++.+++++|+|.
T Consensus 134 --ly~~~~~-------------~~~~I~r~~~-----------------dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~ 181 (266)
T d1ijqa1 134 --MYWTDWG-------------TPAKIKKGGL-----------------NGVDIYSLVTENIQWPNGITLDLLSGRLYWV 181 (266)
T ss_dssp --EEEEECS-------------SSCEEEEEET-----------------TSCCEEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred --EEEeccC-------------CCcceeEecc-----------------CCCceecccccccceeeEEEeeccccEEEEe
Confidence 5555421 2236999998 5555555543 33456678899999999998
Q ss_pred ecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEE
Q 003886 390 SAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQV 469 (789)
Q Consensus 390 s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 469 (789)
... ...|..+|+++.....+ .. ... .++ .....+.++.+||++- .+...
T Consensus 182 d~~----------~~~I~~~~~dG~~~~~~-------~~---~~~--~~~-------~p~~lav~~~~ly~td--~~~~~ 230 (266)
T d1ijqa1 182 DSK----------LHSISSIDVNGGNRKTI-------LE---DEK--RLA-------HPFSLAVFEDKVFWTD--IINEA 230 (266)
T ss_dssp ETT----------TTEEEEEETTSCSCEEE-------EE---CTT--TTS-------SEEEEEEETTEEEEEE--TTTTE
T ss_pred cCC----------cCEEEEEECCCCCEEEE-------Ee---CCC--ccc-------ccEEEEEECCEEEEEE--CCCCe
Confidence 643 24799999977543211 11 000 000 0112344566787753 23346
Q ss_pred EEEEECCCCc
Q 003886 470 IISVNVSSGE 479 (789)
Q Consensus 470 l~~~dl~tg~ 479 (789)
|++++..+|+
T Consensus 231 I~~~~~~~g~ 240 (266)
T d1ijqa1 231 IFSANRLTGS 240 (266)
T ss_dssp EEEEETTTCC
T ss_pred EEEEECCCCc
Confidence 8888876654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.28 E-value=0.0043 Score=61.35 Aligned_cols=134 Identities=12% Similarity=0.052 Sum_probs=77.8
Q ss_pred CceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhh
Q 003886 272 QPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASE 351 (789)
Q Consensus 272 ~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~ 351 (789)
...|+.+|+++++.+... .+..++.+.+.+||+ |++... ..|+++|.
T Consensus 39 ~~~I~r~d~~~g~~~~~~---~~~~~~~i~~~~dg~-----l~va~~----------------~gl~~~d~--------- 85 (295)
T d2ghsa1 39 ERELHELHLASGRKTVHA---LPFMGSALAKISDSK-----QLIASD----------------DGLFLRDT--------- 85 (295)
T ss_dssp GTEEEEEETTTTEEEEEE---CSSCEEEEEEEETTE-----EEEEET----------------TEEEEEET---------
T ss_pred CCEEEEEECCCCeEEEEE---CCCCcEEEEEecCCC-----EEEEEe----------------CccEEeec---------
Confidence 367999999999877652 233456788889986 444431 15889997
Q ss_pred hhhhcCCCCCCCeeecCCCCC-----ccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeE
Q 003886 352 LELKESSSEDLPVVNLTESIS-----SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDV 426 (789)
Q Consensus 352 ~~~~~~~~~~~~~~~Lt~~~~-----~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v 426 (789)
++++.+.+..... ......+.|+|+ |++.+...... .....+++++ .++...+
T Consensus 86 --------~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~----~~~g~l~~~~--~g~~~~~------- 143 (295)
T d2ghsa1 86 --------ATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAE----TGAGSIYHVA--KGKVTKL------- 143 (295)
T ss_dssp --------TTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCC----TTCEEEEEEE--TTEEEEE-------
T ss_pred --------ccceeeEEeeeecCCCcccceeeEECCCCC-EEEEecccccc----ccceeEeeec--CCcEEEE-------
Confidence 6677666643211 244567899997 45555433111 1223455543 3322211
Q ss_pred EeeeeccCCCCCccccccCCCCCccccCCCEEEEEEEeCCeEEEEEEEC
Q 003886 427 IPVVQCAEGDCFPGLYSSSILSNPWLSDGCTMLLSSIWGSSQVIISVNV 475 (789)
Q Consensus 427 ~~~~~~~~~~~f~g~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~l~~~dl 475 (789)
..-. .. ...+.|++|++.+|++.+.. ..||++++
T Consensus 144 ~~~~------~~-------~Ng~~~s~d~~~l~~~dt~~--~~I~~~~~ 177 (295)
T d2ghsa1 144 FADI------SI-------PNSICFSPDGTTGYFVDTKV--NRLMRVPL 177 (295)
T ss_dssp EEEE------SS-------EEEEEECTTSCEEEEEETTT--CEEEEEEB
T ss_pred eecc------CC-------cceeeecCCCceEEEeeccc--ceeeEeee
Confidence 1100 01 12568999999998875444 45666665
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=0.013 Score=56.06 Aligned_cols=94 Identities=11% Similarity=-0.059 Sum_probs=52.5
Q ss_pred ccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchh
Q 003886 270 KRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEA 349 (789)
Q Consensus 270 ~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~ 349 (789)
..+..|.+||+.+++..... ......+. ..++++.. |+... .+..|.++|+
T Consensus 155 s~d~~i~~~d~~~~~~~~~~-~~~~~~v~--~~~~~~~~----l~~~~---------------~dg~i~i~d~------- 205 (293)
T d1p22a2 155 SGDRTIKVWNTSTCEFVRTL-NGHKRGIA--CLQYRDRL----VVSGS---------------SDNTIRLWDI------- 205 (293)
T ss_dssp ETTSEEEEEETTTCCEEEEE-ECCSSCEE--EEEEETTE----EEEEE---------------TTSCEEEEET-------
T ss_pred cCCCceeeecCCCCcEEEEE-cccccccc--cccCCCCe----EEEec---------------CCCEEEEEec-------
Confidence 34678999999888754331 11122222 34555665 55544 2236778887
Q ss_pred hhhhhhcCCCCCCCe-eecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCC
Q 003886 350 SELELKESSSEDLPV-VNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 350 ~~~~~~~~~~~~~~~-~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
.+... ........ ..-.++++++.|+..+.+. .|++||+.++.
T Consensus 206 ----------~~~~~~~~~~~~~~--~v~~~~~~~~~l~sg~~dg-----------~i~iwd~~~~~ 249 (293)
T d1p22a2 206 ----------ECGACLRVLEGHEE--LVRCIRFDNKRIVSGAYDG-----------KIKVWDLVAAL 249 (293)
T ss_dssp ----------TTCCEEEEECCCSS--CEEEEECCSSEEEEEETTS-----------CEEEEEHHHHT
T ss_pred ----------ccceeeeeecccce--eeeeccccceEEEEEcCCC-----------EEEEEECCCCc
Confidence 33333 23322222 2235788999887666442 58889876543
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.16 Score=47.85 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=33.9
Q ss_pred ccCCCEEEEEEEeCCeEEEEEEECCCCcEEEecCCCCCceeEEeeecCCEEEEEEeCCCCCCeEEEEeecc
Q 003886 452 LSDGCTMLLSSIWGSSQVIISVNVSSGELLRITPAESNFSWSLLTLDGDNIIAVSSSPVDVPQVKYGYFVD 522 (789)
Q Consensus 452 s~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~~~~~s~dg~~l~~~~ss~~~p~~i~~~~~~~ 522 (789)
++++..+ +++..++.. ..+|+.+++.......... ....++.++..|+.... .. .+.+.++..
T Consensus 185 ~~~~~~l-~~~~~dg~i--~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~l~sg~~-dg---~i~iwd~~~ 247 (293)
T d1p22a2 185 QYRDRLV-VSGSSDNTI--RLWDIECGACLRVLEGHEE-LVRCIRFDNKRIVSGAY-DG---KIKVWDLVA 247 (293)
T ss_dssp EEETTEE-EEEETTSCE--EEEETTTCCEEEEECCCSS-CEEEEECCSSEEEEEET-TS---CEEEEEHHH
T ss_pred cCCCCeE-EEecCCCEE--EEEecccceeeeeecccce-eeeeccccceEEEEEcC-CC---EEEEEECCC
Confidence 4455544 455555554 4457778777665554432 23356667666554433 32 266666543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.66 E-value=0.12 Score=49.18 Aligned_cols=78 Identities=5% Similarity=0.017 Sum_probs=41.1
Q ss_pred ccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCCCCCcccceeeEEeeeeccCCCCCccccccCCCCCccc
Q 003886 373 SAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNGNFSSLEKIVDVIPVVQCAEGDCFPGLYSSSILSNPWL 452 (789)
Q Consensus 373 ~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~~~~~t~~~~~v~~~~~~~~~~~f~g~~~~~~~~~~ws 452 (789)
.....+++|+|+ |++.... ...|+++|.++......... .+. ....+++.
T Consensus 141 ~p~~i~~~~~g~-~~v~~~~----------~~~i~~~d~~~~~~~~~~~~--------------~~~-----~p~gi~~d 190 (260)
T d1rwia_ 141 DPDGVAVDNSGN-VYVTDTD----------NNRVVKLEAESNNQVVLPFT--------------DIT-----APWGIAVD 190 (260)
T ss_dssp SCCEEEECTTCC-EEEEEGG----------GTEEEEECTTTCCEEECCCS--------------SCC-----SEEEEEEC
T ss_pred CcceeeecCCCC-Eeeeccc----------cccccccccccceeeeeecc--------------ccC-----CCccceee
Confidence 456678899998 4333322 24688998766433211100 000 11245667
Q ss_pred cCCCEEEEEEEeCCeEEEEEEECCCCcEEEe
Q 003886 453 SDGCTMLLSSIWGSSQVIISVNVSSGELLRI 483 (789)
Q Consensus 453 ~Dg~~l~~~~~~~~~~~l~~~dl~tg~~~~l 483 (789)
++|+ ||++. .....|++++.+++..+.+
T Consensus 191 ~~g~-l~vsd--~~~~~i~~~~~~~~~~~~~ 218 (260)
T d1rwia_ 191 EAGT-VYVTE--HNTNQVVKLLAGSTTSTVL 218 (260)
T ss_dssp TTCC-EEEEE--TTTTEEEEECTTCSCCEEC
T ss_pred eeee-eeeee--cCCCEEEEEeCCCCeEEEE
Confidence 7876 65543 2334577777655544443
|
| >d1ivya_ c.69.1.5 (A:) Human 'protective protein', HPP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Human 'protective protein', HPP species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.49 E-value=0.0073 Score=63.69 Aligned_cols=133 Identities=18% Similarity=0.227 Sum_probs=81.9
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHH----------------HHHHHHCCcEEEEEcCCCCCCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS----------------LAFLSSVGYSLLIVNYRGSLGF 635 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~----------------~~~la~~Gy~V~~~d~rGs~G~ 635 (789)
++..|.-|++..++ .....|+++++-|||++......... ..-+.+. ..+|.+|.+-.+||
T Consensus 30 ~~~~lffw~~~s~~--~~~~~Pl~~wlnGGPG~SS~~g~~~e~GP~~v~~~~~~~~~N~~SW~~~-anllfIDqPvGtGf 106 (452)
T d1ivya_ 30 GSKHLHYWFVESQK--DPENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNLI-ANVLYLESPAGVGF 106 (452)
T ss_dssp TTEEEEEEEECCSS--CGGGSCEEEEECCTTTBCTHHHHHTTTSSEEECTTSSCEEECTTCGGGS-SEEEEECCSTTSTT
T ss_pred CCceEEEEEEEcCC--CCCCCCEEEEECCCCcHHHHHHHHHccCCcEEcCCCCeeccCCcchhcc-cCEEEEecCCCccc
Confidence 45678888886653 33568999999999997432211000 0001122 57899997633777
Q ss_pred CchhhccCCCCCCcccHHHHHHHHHHHHH-cCCCCCccEEEEEcCccHHHHHHHHHh----CCCceeEEEEeCCccch
Q 003886 636 GEEALQSLPGKVGSQDVNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQ----APDKFVAAAARNPLCNL 708 (789)
Q Consensus 636 G~~~~~~~~~~~~~~~~~D~~~~i~~l~~-~~~~d~~rv~l~G~S~GG~~a~~~~~~----~p~~~~a~v~~~pv~~~ 708 (789)
+.........+ ......|+.+++..+.+ .+.....++.|+|-||||..+..++.. ..-.++++++.+|+++.
T Consensus 107 S~~~~~~~~~~-~~~~a~d~~~~l~~f~~~fp~~~~~~~yi~GESYgG~y~P~ia~~i~~~~~i~l~Gi~igng~~d~ 183 (452)
T d1ivya_ 107 SYSDDKFYATN-DTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVMQDPSMNLQGLAVGNGLSSY 183 (452)
T ss_dssp CEESSCCCCCB-HHHHHHHHHHHHHHHHHHSGGGTTSCEEEEEETTHHHHHHHHHHHHTTCTTSCEEEEEEESCCSBH
T ss_pred ccCCCCCCCCC-cHHHHHHHHHHHHHHHHhchhhcCCceEEeeccccchhhHHHHHHHHhcCcccccceEcCCCccCc
Confidence 65432111110 01124555555544444 444556789999999999988877753 22358999999999875
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.26 E-value=0.071 Score=47.73 Aligned_cols=130 Identities=16% Similarity=0.196 Sum_probs=81.6
Q ss_pred eEEEEEeechhhcccceeEEEEEEeecCCCCccceeecCCcceecccEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCc
Q 003886 110 QAMFSISQPNLLANKRKKFMLSTVISKENENSVTFQWAPFPVEMTGASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQ 189 (789)
Q Consensus 110 ~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~ 189 (789)
++.|. +|...++..-.++..++...|.+ .++. ++-| +.-.+.--|++.++|+...+ +...+|.+ ++|.
T Consensus 68 fi~f~---RDV~kGkE~Hai~~~Nlk~~GEE-~~i~-spk~-----vRI~S~~yddk~vvF~Gase-d~~~LYvi-egGk 135 (313)
T d2hu7a1 68 RVILV---RDVSKGAEQHALFKVNTSRPGEE-QRLE-AVKP-----MRILSGVDTGEAVVFTGATE-DRVALYAL-DGGG 135 (313)
T ss_dssp EEEEE---EECSTTSCCEEEEEEETTSTTCE-EECT-TSCS-----BEEEEEEECSSCEEEEEECS-SCEEEEEE-ETTE
T ss_pred eEEEE---eehhcCcceeeEEEEccCCCCee-eEec-CCce-----EEEEEeeecCceEEEecccC-CceEEEEE-eCCc
Confidence 45554 45566777778888887533432 2332 2211 22333444899999987665 33344444 5677
Q ss_pred eeEEEecCCCccccccCCCcccceeecC--CCCEEEEEeecCCCCCCCccCCCCCCCCCCcCCCCCCCcceeeCCccccc
Q 003886 190 LEKEFHVPQTVHGSVYADGWFEGISWNS--DETLIAYVAEEPSPSKPTFSLGSTKGGSSDKDCNSWKGQGDWEEDWGETY 267 (789)
Q Consensus 190 ~~~~~~~~~~~~g~v~~d~~~~~~~wSp--Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~~~ 267 (789)
.+++.+++. ++|-- .|++|+=...-.
T Consensus 136 lrkL~~vPp--------------FsFVtDI~~d~I~G~g~~~-------------------------------------- 163 (313)
T d2hu7a1 136 LRELARLPG--------------FGFVSDIRGDLIAGLGFFG-------------------------------------- 163 (313)
T ss_dssp EEEEEEESS--------------CEEEEEEETTEEEEEEEEE--------------------------------------
T ss_pred eeeeccCCC--------------cceEEeccCCeEEEEeeec--------------------------------------
Confidence 888888753 22222 366665432211
Q ss_pred CCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCC
Q 003886 268 AGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNE 307 (789)
Q Consensus 268 ~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~ 307 (789)
.+...+|+.|+.+|..+.+ ++.+.++.++..+|+.|
T Consensus 164 --g~~~sfF~adl~SG~lri~--tpkeGS~~~ay~~~gnK 199 (313)
T d2hu7a1 164 --GGRVSLFTSNLSSGGLRVF--DSGEGSFSSASISPGMK 199 (313)
T ss_dssp --TTEEEEEEEETTTEEEEEE--CCSSEEEEEEEECTTSC
T ss_pred --CCcceEEEEecccCCEEEe--cCCCCcccceeEccCce
Confidence 1335699999999999999 78888999999999776
|
| >d1ku0a_ c.69.1.18 (A:) Lipase L1 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Bacterial lipase domain: Lipase L1 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.16 E-value=0.0052 Score=62.50 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=18.1
Q ss_pred ccEEEEEcCccHHHHHHHHHh
Q 003886 671 SKVTVVGGSHGGFLTTHLIGQ 691 (789)
Q Consensus 671 ~rv~l~G~S~GG~~a~~~~~~ 691 (789)
++|.|+||||||..+-.++..
T Consensus 105 ~kVnLIgHS~GGld~Ryl~~~ 125 (388)
T d1ku0a_ 105 GRVHIIAHSQGGQTARMLVSL 125 (388)
T ss_dssp CCEEEEEETTHHHHHHHHHHH
T ss_pred CceeEeecccccHHHHHHHHH
Confidence 589999999999988877754
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.99 E-value=0.47 Score=44.73 Aligned_cols=94 Identities=9% Similarity=0.065 Sum_probs=51.8
Q ss_pred ceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeeeeeccCCcceEEEecccccchhhhh
Q 003886 273 PSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIKYCYNRPCALYAVRVSLYKSEASEL 352 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~~~ 352 (789)
..+++++..+....... ...-.....++.+|+|+ |+++.+ ....|+.++.
T Consensus 119 ~~~~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~-----~~v~~~--------------~~~~i~~~d~---------- 168 (260)
T d1rwia_ 119 NRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGN-----VYVTDT--------------DNNRVVKLEA---------- 168 (260)
T ss_dssp TEEEEECTTCSSCEECC-CCSCCSCCEEEECTTCC-----EEEEEG--------------GGTEEEEECT----------
T ss_pred ccccccccccceeeeee-ecccCCcceeeecCCCC-----Eeeecc--------------cccccccccc----------
Confidence 45666666555443331 12222445778889886 544432 2236888886
Q ss_pred hhhcCCCCCCCeeecC-CCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCC
Q 003886 353 ELKESSSEDLPVVNLT-ESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTN 414 (789)
Q Consensus 353 ~~~~~~~~~~~~~~Lt-~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~ 414 (789)
++.....+. .........++.++|+ | |++... ..+|++++..++
T Consensus 169 -------~~~~~~~~~~~~~~~p~gi~~d~~g~-l-~vsd~~---------~~~i~~~~~~~~ 213 (260)
T d1rwia_ 169 -------ESNNQVVLPFTDITAPWGIAVDEAGT-V-YVTEHN---------TNQVVKLLAGST 213 (260)
T ss_dssp -------TTCCEEECCCSSCCSEEEEEECTTCC-E-EEEETT---------TTEEEEECTTCS
T ss_pred -------ccceeeeeeccccCCCccceeeeeee-e-eeeecC---------CCEEEEEeCCCC
Confidence 444333332 2233456678999997 4 444332 246888876543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.94 E-value=0.037 Score=55.91 Aligned_cols=115 Identities=9% Similarity=0.029 Sum_probs=63.2
Q ss_pred CCCCeEEEEecCCCCCCeEEEEe-cCCceeEEEecCCCccccccCCCcccceeecCCCCEEEEEeecCCCCCCCccCCCC
Q 003886 163 PSGSKLLVVRNPENESPIQFELW-SQSQLEKEFHVPQTVHGSVYADGWFEGISWNSDETLIAYVAEEPSPSKPTFSLGST 241 (789)
Q Consensus 163 PdG~~la~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~g~v~~d~~~~~~~wSpDg~~la~~~~~~~~~~~~~~~~~~ 241 (789)
+||++|. +.+. .+..+-+|+ +.-+..+++..+... ...+++.+++++..+..+..+ ...|.-+
T Consensus 97 yDGrylF-VNDk--an~RVAvIdl~~fkt~kIi~iPn~~--------~~HG~r~~~~p~T~YV~~~~e-~~vP~pn---- 160 (459)
T d1fwxa2 97 YDGRFLF-MNDK--ANTRVARVRCDVMKCDAILEIPNAK--------GIHGLRPQKWPRSNYVFCNGE-DETPLVN---- 160 (459)
T ss_dssp EEEEEEE-EEET--TTTEEEEEETTTTEEEEEEECSSCC--------SEEEEEECCSSBCSEEEEEEC-SCEESSC----
T ss_pred cceeEEE-EEcC--CCceEEEEECcceeeeEEEecCCCC--------CCceeecccCCCeEEEEccCc-cccccCC----
Confidence 4888874 4443 456788999 677888888775432 113566677766544333221 1111100
Q ss_pred CCCCCCcCCCCCCCcceeeCCcccccCCccCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEee
Q 003886 242 KGGSSDKDCNSWKGQGDWEEDWGETYAGKRQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGW 318 (789)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~g~~~~~~~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~ 318 (789)
.++...+. .+-...+.++|.++.++..- ..-+.......++|||++ +++++.
T Consensus 161 -dg~~l~d~------------------~~y~~~~t~ID~~tm~V~~Q--V~V~g~ld~~~~s~dGK~----af~Tsy 212 (459)
T d1fwxa2 161 -DGTNMEDV------------------ANYVNVFTAVDADKWEVAWQ--VLVSGNLDNCDADYEGKW----AFSTSY 212 (459)
T ss_dssp -SSSSTTCG------------------G-EEEEEEEEETTTTEEEEE--EEESSCCCCEEECSSSSE----EEEEES
T ss_pred -CCccccch------------------hhcceEEEEEecCCceEEEE--eeeCCChhccccCCCCCE----EEEEec
Confidence 00000000 01224566899998876533 122334568899999997 666653
|
| >d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.45 E-value=0.032 Score=57.87 Aligned_cols=131 Identities=19% Similarity=0.216 Sum_probs=79.5
Q ss_pred CeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHHH---------------HHHHHCCcEEEEEcCCCCCCCCc
Q 003886 573 QKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKSL---------------AFLSSVGYSLLIVNYRGSLGFGE 637 (789)
Q Consensus 573 g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~~---------------~~la~~Gy~V~~~d~rGs~G~G~ 637 (789)
+..+.-|++...+ ...+.|+|+++-|||++.......... .-+.+ =..+|.+|.+-..|++.
T Consensus 27 ~~~lfyw~~~s~~--~~~~~Pl~~WlnGGPG~SS~~g~~~e~GP~~i~~~~~~~~N~~sW~~-~anllfiD~PvGtGfSy 103 (421)
T d1wpxa1 27 DKHFFFWTFESRN--DPAKDPVILWLNGGPGCSSLTGLFFELGPSSIGPDLKPIGNPYSWNS-NATVIFLDQPVNVGFSY 103 (421)
T ss_dssp CCEEEEEEECCSS--CTTTSCEEEEECCTTTBCTHHHHHHTTSSEEECTTSCEEECTTCGGG-SSEEEEECCSTTSTTCB
T ss_pred CceEEEEEEEeCC--CCCCCCEEEEECCCCcHHHHHHHHHhcCCcEECCCCccccCCccccc-ccCEEEEecCCCCCcee
Confidence 4568888876543 345679999999999974332111000 00111 25789999653377765
Q ss_pred hhhccCCCCCCcccHHHHHHHHHHHHHc-CCC--CCccEEEEEcCccHHHHHHHHHh---CC---CceeEEEEeCCccch
Q 003886 638 EALQSLPGKVGSQDVNDVLTAIDHVIDM-GLA--NPSKVTVVGGSHGGFLTTHLIGQ---AP---DKFVAAAARNPLCNL 708 (789)
Q Consensus 638 ~~~~~~~~~~~~~~~~D~~~~i~~l~~~-~~~--d~~rv~l~G~S~GG~~a~~~~~~---~p---~~~~a~v~~~pv~~~ 708 (789)
...... .--....+|+.++++.+.++ +.. -..++.|.|-||||..+..+|.+ .. -.++++++.+|+++.
T Consensus 104 ~~~~~~--~~~~~~a~d~~~fl~~f~~~fp~~~~k~~~~yi~GESYgG~yvP~la~~i~~~~~~~inlkGi~iGng~~dp 181 (421)
T d1wpxa1 104 SGSSGV--SNTVAAGKDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGNGLTDP 181 (421)
T ss_dssp CSSCCC--CSHHHHHHHHHHHHHHHHHHCTHHHHTCCCEEEEEETTHHHHHHHHHHHHHHCSSCSSCCCEEEEESCCCCH
T ss_pred cCCccc--cchHHHHHHHHHHHHHHHHhChhhhccCCCcEEeeecccccccHHHHHHHHHccCCCcceeeeEecCCcccc
Confidence 332111 11112245666666555554 322 23579999999999988877643 22 258899999999886
|
| >d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Serine carboxypeptidase-like domain: Serine carboxypeptidase II species: Baker's yeast (Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]
Probab=95.08 E-value=0.04 Score=58.24 Aligned_cols=136 Identities=15% Similarity=0.146 Sum_probs=76.2
Q ss_pred CCeeEEEEEEecCCCCCCCCCcEEEEEcCCCCCCCchhhHHH---------------HHHHHHCCcEEEEEcCCCCCCCC
Q 003886 572 AQKPFEAIFVSSSHKKDCSCDPLIVVLHGGPHSVSLSSYSKS---------------LAFLSSVGYSLLIVNYRGSLGFG 636 (789)
Q Consensus 572 ~g~~l~~~~~~P~~~~~~~~~P~vv~~HGg~~~~~~~~~~~~---------------~~~la~~Gy~V~~~d~rGs~G~G 636 (789)
.+..+.-|++......+....|+||++-|||++......... ..-+.+ -..||.+|.+-..||.
T Consensus 47 ~~~~~ffw~fe~~~~~~~~~~Pl~lWlnGGPGcSS~~g~f~E~GP~~v~~~~~l~~Np~SWn~-~an~lfIDqPvGvGfS 125 (483)
T d1ac5a_ 47 SDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMDGALVESGPFRVNSDGKLYLNEGSWIS-KGDLLFIDQPTGTGFS 125 (483)
T ss_dssp CCCEEEEEEEECSCSGGGSSCCEEEEECCTTTBCTHHHHHHSSSSEEECTTSCEEECTTCGGG-TSEEEEECCSTTSTTC
T ss_pred CcceEEEEEEEecCCCCCCCCCEEEEECCCCcHHHHHHHHHccCCeEECCCCceeeCCCcccc-cCCEEEEeCCCCcCee
Confidence 345677777755422122346999999999997532211100 000111 2578999976446776
Q ss_pred chhhcc--C-CCCCCccc----HHHHHHHHHHHHH-cCCCCCccEEEEEcCccHHHHHHHHHhC------------CCce
Q 003886 637 EEALQS--L-PGKVGSQD----VNDVLTAIDHVID-MGLANPSKVTVVGGSHGGFLTTHLIGQA------------PDKF 696 (789)
Q Consensus 637 ~~~~~~--~-~~~~~~~~----~~D~~~~i~~l~~-~~~~d~~rv~l~G~S~GG~~a~~~~~~~------------p~~~ 696 (789)
...... . .......+ ..++..++.-..+ .+..-..++.|+|-||||..+..+|..- +-.+
T Consensus 126 y~~~~~~~~~~~~~~~~~~~~~a~~~~~fl~~f~~~fp~~~~~~~yI~GESYgG~YvP~la~~i~~~n~~~~~~~~~inL 205 (483)
T d1ac5a_ 126 VEQNKDEGKIDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDL 205 (483)
T ss_dssp SSCCSSGGGSCTTSSCCSHHHHHHHHHHHHHHHHHHCTTGGGSEEEEEEEETHHHHHHHHHHHHHHHHHHCCSTTSCCEE
T ss_pred ecCCCCccccccccccCCHHHHHHHHHHHHHHHHHhCcccccCCeEEeecccccchHHHHHHHHHHhccccccCCCcccc
Confidence 432110 0 00111122 2334443333333 3444457899999999999887776531 1258
Q ss_pred eEEEEeCCccch
Q 003886 697 VAAAARNPLCNL 708 (789)
Q Consensus 697 ~a~v~~~pv~~~ 708 (789)
+++++.+|+++.
T Consensus 206 kGi~IGNg~~d~ 217 (483)
T d1ac5a_ 206 KALLIGNGWIDP 217 (483)
T ss_dssp EEEEEEEECCCH
T ss_pred eeeeecCCccCh
Confidence 999999998776
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=93.33 E-value=0.26 Score=49.57 Aligned_cols=101 Identities=15% Similarity=0.067 Sum_probs=55.2
Q ss_pred cCceEEEEEccCCceEeccCCCCCCccceEEEeeCCCCCccEEEEEeecCCc--eeeee--eeeccCCcceEEEeccccc
Q 003886 271 RQPSLFVININSGEVQAVKGIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSET--RKLGI--KYCYNRPCALYAVRVSLYK 346 (789)
Q Consensus 271 ~~~~l~v~d~~~g~~~~l~~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~--~~~g~--~~~~~~~~~l~~~d~~~~~ 346 (789)
.++.|.++|+++-++.++..++.......+...++++.. -+|...+... ...|. ....+....+..+|.
T Consensus 108 an~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~---YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~---- 180 (459)
T d1fwxa2 108 ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSN---YVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA---- 180 (459)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCS---EEEEEECSCEESSCSSSSTTCGG-EEEEEEEEET----
T ss_pred CCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeE---EEEccCccccccCCCCccccchhhcceEEEEEec----
Confidence 458899999999998776434444445556677788772 2332222110 00000 000011123556776
Q ss_pred chhhhhhhhcCCCCCCCee-ecCCCCCccCcceecCCCCEEEEEecC
Q 003886 347 SEASELELKESSSEDLPVV-NLTESISSAFFPRFSPDGKFLVFLSAK 392 (789)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~-~Lt~~~~~~~~p~~SpDG~~la~~s~~ 392 (789)
++.++. ++. -.+......+||||+++++.+..
T Consensus 181 -------------~tm~V~~QV~-V~g~ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 181 -------------DKWEVAWQVL-VSGNLDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp -------------TTTEEEEEEE-ESSCCCCEEECSSSSEEEEEESC
T ss_pred -------------CCceEEEEee-eCCChhccccCCCCCEEEEEecc
Confidence 443332 332 23356788999999998887744
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.82 E-value=5.2 Score=37.41 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=20.9
Q ss_pred cEEEEeCCCCCeEEEEecCCCCCCeEEEEecCCceeEEE
Q 003886 156 ASAVVPSPSGSKLLVVRNPENESPIQFELWSQSQLEKEF 194 (789)
Q Consensus 156 ~~~~~~SPdG~~la~~~~~~~~~~~~~~i~~~~~~~~~~ 194 (789)
...++++|||+ | |+.+.. +..+..+..+|+....+
T Consensus 25 P~gvavd~dg~-i-~VaD~~--n~rI~v~d~~G~~~~~~ 59 (279)
T d1q7fa_ 25 PSGVAVNAQND-I-IVADTN--NHRIQIFDKEGRFKFQF 59 (279)
T ss_dssp EEEEEECTTCC-E-EEEEGG--GTEEEEECTTSCEEEEE
T ss_pred ccEEEEcCCCC-E-EEEECC--CCEEEEEeCCCCEEEEe
Confidence 45678999997 3 555432 33455555566555444
|
| >d1lgya_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizopus niveus [TaxId: 4844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizopus niveus [TaxId: 4844]
Probab=89.43 E-value=0.25 Score=47.04 Aligned_cols=53 Identities=23% Similarity=0.254 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHh----C----CCceeEEEEeCCcc
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ----A----PDKFVAAAARNPLC 706 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~----~----p~~~~a~v~~~pv~ 706 (789)
.+++...++.++++ ....+|.+.|||+||.+|..++.. . ++.+++....+|-.
T Consensus 116 ~~~i~~~v~~~~~~--~~~~~i~vtGHSLGGAlA~L~a~~l~~~~~~~~~~~i~~~tFG~Prv 176 (265)
T d1lgya_ 116 VNDYFPVVQEQLTA--HPTYKVIVTGHSLGGAQALLAGMDLYQREPRLSPKNLSIFTVGGPRV 176 (265)
T ss_dssp HHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHHHHHHHHCTTCSTTTEEEEEESCCCC
T ss_pred HHHHHHHHHHHHhh--CCCceEEEEecccchHHHHHHHHHHHHhCcccCCCcceEEEecCccc
Confidence 34556666666554 235689999999999999887753 2 23456666666644
|
| >d1uwca_ c.69.1.17 (A:) Feruloyl esterase A {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Feruloyl esterase A species: Aspergillus niger [TaxId: 5061]
Probab=88.96 E-value=0.35 Score=45.76 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHh---CCCceeEEEEeCCcc
Q 003886 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ---APDKFVAAAARNPLC 706 (789)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~---~p~~~~a~v~~~pv~ 706 (789)
+++...++.++++ ....+|.+.|||+||.+|..++.. ....+++....+|-.
T Consensus 109 ~~i~~~i~~~~~~--~~~~~i~vTGHSLGGAlA~L~a~~l~~~~~~~~~~tFG~Prv 163 (261)
T d1uwca_ 109 DQVESLVKQQASQ--YPDYALTVTGHSLGASMAALTAAQLSATYDNVRLYTFGEPRS 163 (261)
T ss_dssp HHHHHHHHHHHHH--STTSEEEEEEETHHHHHHHHHHHHHHTTCSSEEEEEESCCCC
T ss_pred HHHHHHHHHHHhh--CCCcceEEeccchhHHHHHHHHHHHHhcCCCcceEEecCccc
Confidence 4556666666665 245689999999999999987753 223566666666644
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=88.57 E-value=11 Score=36.27 Aligned_cols=109 Identities=14% Similarity=-0.034 Sum_probs=60.1
Q ss_pred ceEEEEEccCCceEecc--CCCCCCccceEEEeeCCCCCccEEEEEeecCCceeeeee---eeccCCcceEEEecccccc
Q 003886 273 PSLFVININSGEVQAVK--GIPKSLSVGQVVWAPLNEGLHQYLVFVGWSSETRKLGIK---YCYNRPCALYAVRVSLYKS 347 (789)
Q Consensus 273 ~~l~v~d~~~g~~~~l~--~~~~~~~~~~~~wSPDg~~~~~~l~f~~~~~~~~~~g~~---~~~~~~~~l~~~d~~~~~~ 347 (789)
..||.++.++.+.+.+. ..+.-....+++...||. ++|+-...-....... +-......++.+|.
T Consensus 126 ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-----fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~----- 195 (340)
T d1v04a_ 126 VEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-----FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP----- 195 (340)
T ss_dssp EEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-----EEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS-----
T ss_pred eEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-----EEEecCccCcChhhhhhhHhhcCCceeEEEEcC-----
Confidence 45677776665554432 122234567889999886 6666321110000000 00011224555543
Q ss_pred hhhhhhhhcCCCCCCCeeecCCCCCccCcceecCCCCEEEEEecCCCCCCCCccccceeEEeecCCCC
Q 003886 348 EASELELKESSSEDLPVVNLTESISSAFFPRFSPDGKFLVFLSAKSSVDSGAHSATDSLHRIDWPTNG 415 (789)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~Lt~~~~~~~~p~~SpDG~~la~~s~~~~~~~g~~~~~~~L~~~d~~~~~ 415 (789)
+..+.+..+.......++|||+++|+..... ..+|+++++...+
T Consensus 196 --------------~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~----------~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 196 --------------NDVRVVAEGFDFANGINISPDGKYVYIAELL----------AHKIHVYEKHANW 239 (340)
T ss_dssp --------------SCEEEEEEEESSEEEEEECTTSSEEEEEEGG----------GTEEEEEEECTTS
T ss_pred --------------CceEEEcCCCCccceeEECCCCCEEEEEeCC----------CCeEEEEEeCCCc
Confidence 4455554444557789999999988776643 3479999887643
|
| >d3tgla_ c.69.1.17 (A:) Triacylglycerol lipase {Rhizomucor miehei [TaxId: 4839]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Rhizomucor miehei [TaxId: 4839]
Probab=88.49 E-value=0.39 Score=45.58 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHh----C----CCceeEEEEeCCcc
Q 003886 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ----A----PDKFVAAAARNPLC 706 (789)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~----~----p~~~~a~v~~~pv~ 706 (789)
.++...++.++++ ....+|.+.|||+||.+|..++.. . ...+.+....+|-.
T Consensus 116 ~~i~~~i~~~~~~--~~~~~i~vtGHSLGGAlA~L~a~~l~~~~~~~~~~~i~~~TFG~Prv 175 (265)
T d3tgla_ 116 NELVATVLDQFKQ--YPSYKVAVTGHSLGGATVLLCALDLYQREEGLSSSNLFLYTQGQPRV 175 (265)
T ss_dssp HHHHHHHHHHHHH--CTTSEEEEEEETHHHHHHHHHHHHHHHTCSSCCTTTEEEEEESCCCC
T ss_pred HHHHHHHHHHHHh--CCCceEEEecccchHHHHHHHHHHHHHhccccCccccceeecCCCcc
Confidence 4555556555554 245789999999999999987753 1 23455666666643
|
| >d1tiaa_ c.69.1.17 (A:) Triacylglycerol lipase {Penicillium camembertii [TaxId: 5075]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Penicillium camembertii [TaxId: 5075]
Probab=86.93 E-value=0.27 Score=46.95 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHh
Q 003886 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQ 691 (789)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~ 691 (789)
.++...++.++++ -...+|.+.|||+||.+|..++..
T Consensus 121 ~~i~~~i~~~~~~--~~~~~i~iTGHSLGGAlA~L~a~~ 157 (271)
T d1tiaa_ 121 DDIIKELKEVVAQ--NPNYELVVVGHSLGAAVATLAATD 157 (271)
T ss_pred HHHHHHHHHHHHh--CCCceEEEeccchHHHHHHHHHHH
Confidence 4556666665554 235689999999999999987764
|
| >d1tiba_ c.69.1.17 (A:) Triacylglycerol lipase {Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Fungal lipases domain: Triacylglycerol lipase species: Thermomyces lanuginosus, formerly Humicola lanuginosa [TaxId: 5541]
Probab=86.89 E-value=0.3 Score=46.54 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhC---CCceeEEEEeCCcc
Q 003886 653 NDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQA---PDKFVAAAARNPLC 706 (789)
Q Consensus 653 ~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~---p~~~~a~v~~~pv~ 706 (789)
+++...++.++++ ...-+|.++|||+||.+|..++... ...++.....+|-.
T Consensus 122 ~~v~~~v~~~~~~--~~~~~i~vtGHSLGGalA~l~a~~l~~~~~~i~~~tFG~Prv 176 (269)
T d1tiba_ 122 DTLRQKVEDAVRE--HPDYRVVFTGHSLGGALATVAGADLRGNGYDIDVFSYGAPRV 176 (269)
T ss_dssp HHHHHHHHHHHHH--CTTSEEEEEEETHHHHHHHHHHHHHTTSSSCEEEEEESCCCC
T ss_pred HHHHHHHHHHHHh--CCCcceeeeccchHHHHHHHHHHHHHhccCcceEEEecCCCc
Confidence 4556666666554 2346899999999999999888642 22455555555543
|
| >d1cexa_ c.69.1.30 (A:) Cutinase {Fungus (Fusarium solani), subsp. pisi [TaxId: 169388]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta-Hydrolases superfamily: alpha/beta-Hydrolases family: Cutinase-like domain: Cutinase species: Fungus (Fusarium solani), subsp. pisi [TaxId: 169388]
Probab=86.21 E-value=2.5 Score=37.54 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHcCCCCCccEEEEEcCccHHHHHHHHHhCC----CceeEEEEeC
Q 003886 652 VNDVLTAIDHVIDMGLANPSKVTVVGGSHGGFLTTHLIGQAP----DKFVAAAARN 703 (789)
Q Consensus 652 ~~D~~~~i~~l~~~~~~d~~rv~l~G~S~GG~~a~~~~~~~p----~~~~a~v~~~ 703 (789)
+.++.+.+....++ ....|+.|+|+|.|+.++-.++...+ +++++++++.
T Consensus 79 ~~~~~~~i~~~a~~--CP~tkiVL~GYSQGA~V~~~~~~~l~~~~~~~V~avvlfG 132 (197)
T d1cexa_ 79 IREMLGLFQQANTK--CPDATLIAGGYSQGAALAAASIEDLDSAIRDKIAGTVLFG 132 (197)
T ss_dssp HHHHHHHHHHHHHH--CTTCEEEEEEETHHHHHHHHHHHHSCHHHHTTEEEEEEES
T ss_pred HHHHHHHHHHHHhh--CCCCeEEEeeeccccHhhhcccccCChhhhhhEEEEEEEe
Confidence 56667777777666 67789999999999999988877543 5788887765
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=82.95 E-value=18 Score=33.33 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=15.1
Q ss_pred CCccccCCCEEEEEEEeCCeEEEEEE
Q 003886 448 SNPWLSDGCTMLLSSIWGSSQVIISV 473 (789)
Q Consensus 448 ~~~ws~Dg~~l~~~~~~~~~~~l~~~ 473 (789)
.++..+||. ||+. +...+..+|++
T Consensus 248 ~vav~~dG~-l~V~-~~n~~v~~fr~ 271 (279)
T d1q7fa_ 248 DVALMDDGS-VVLA-SKDYRLYIYRY 271 (279)
T ss_dssp EEEEETTTE-EEEE-ETTTEEEEEEC
T ss_pred EEEEeCCCc-EEEE-eCCCeEEEEEe
Confidence 456778985 6554 44556667664
|